Citrus Sinensis ID: 001559
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1053 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SMZ4 | 1064 | Alpha-aminoadipic semiald | yes | no | 0.994 | 0.984 | 0.706 | 0.0 | |
| A8E657 | 926 | Alpha-aminoadipic semiald | yes | no | 0.457 | 0.520 | 0.375 | 2e-92 | |
| Q99K67 | 926 | Alpha-aminoadipic semiald | yes | no | 0.402 | 0.457 | 0.399 | 7e-91 | |
| A2VCW9 | 926 | Alpha-aminoadipic semiald | yes | no | 0.402 | 0.457 | 0.399 | 3e-90 | |
| Q9UDR5 | 926 | Alpha-aminoadipic semiald | yes | no | 0.429 | 0.488 | 0.391 | 7e-90 | |
| O59711 | 450 | Saccharopine dehydrogenas | yes | no | 0.419 | 0.982 | 0.360 | 2e-76 | |
| Q9P4R4 | 450 | Saccharopine dehydrogenas | N/A | no | 0.422 | 0.988 | 0.362 | 3e-76 | |
| P38999 | 446 | Saccharopine dehydrogenas | yes | no | 0.417 | 0.986 | 0.351 | 6e-72 | |
| Q54NG9 | 480 | Probable saccharopine deh | no | no | 0.428 | 0.939 | 0.341 | 1e-71 | |
| Q9AJC6 | 385 | Lysine 6-dehydrogenase OS | N/A | no | 0.219 | 0.6 | 0.237 | 1e-08 |
| >sp|Q9SMZ4|AASS_ARATH Alpha-aminoadipic semialdehyde synthase OS=Arabidopsis thaliana GN=LKR/SDH PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 1555 bits (4025), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 745/1054 (70%), Positives = 888/1054 (84%), Gaps = 7/1054 (0%)
Query: 4 LGNGVVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPSTKRIHHDVLYED 63
LGNGVVGIL+E+VNKWERR PLTPSHCARLLH G+D++G++RIVVQPS KRIHHD LYED
Sbjct: 12 LGNGVVGILAETVNKWERRTPLTPSHCARLLHGGKDRTGISRIVVQPSAKRIHHDALYED 71
Query: 64 VGCQISEDLSECGLVLGIKQPKLEMILPDKAYAFFSHTHKAQRENMPLLDKILAERVSLY 123
VGC+IS+DLS+CGL+LGIKQP+LEMILP++AYAFFSHTHKAQ+ENMPLLDKIL+ERV+L
Sbjct: 72 VGCEISDDLSDCGLILGIKQPELEMILPERAYAFFSHTHKAQKENMPLLDKILSERVTLC 131
Query: 124 DYELIVGDNGRRLLAFGKFAGRAGMIDFLHGLGQRYLSLGYSTPFLSLGASYMYSSLAAA 183
DYELIVGD+G+RLLAFGK+AGRAG++DFLHGLGQR L LGYSTPFLSLGASYMYSSLAAA
Sbjct: 132 DYELIVGDHGKRLLAFGKYAGRAGLVDFLHGLGQRKLILGYSTPFLSLGASYMYSSLAAA 191
Query: 184 KAAVISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFGK 243
KAAVISVGEEI++ GLP GICPLVF+FTG+GNVSLGAQEIFKLLPHTFVEPS+LPELF K
Sbjct: 192 KAAVISVGEEIASQGLPLGICPLVFVFTGTGNVSLGAQEIFKLLPHTFVEPSKLPELFVK 251
Query: 244 AK--DQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAPY 301
K Q+G ++KR++QVYGC++TS+DMVEHKDP+K FDKADYYAHPEHYNPVFH+KI+PY
Sbjct: 252 DKGISQNGISTKRVYQVYGCIITSQDMVEHKDPSKSFDKADYYAHPEHYNPVFHEKISPY 311
Query: 302 ASVIVNCMYWEQRFPRLLSTQQLQDLVRKGCPLVGISDITCDIGGSLEFVNRTTSIDSSF 361
SV+VNCMYWE+RFP LLST+QLQDL +KG PLVGI DITCDIGGS+EFVNR T IDS F
Sbjct: 312 TSVLVNCMYWEKRFPCLLSTKQLQDLTKKGLPLVGICDITCDIGGSIEFVNRATLIDSPF 371
Query: 362 FRYDPLSDSYHDDLEGNGLVCQAVDTLPTEFAKEASQHFGDILLEFIGSLSSTVDFTELP 421
FR++P ++SY+DD++G+G++C AVD LPTEFAKEASQHFGDIL F+GSL+S + ++LP
Sbjct: 372 FRFNPSNNSYYDDMDGDGVLCMAVDILPTEFAKEASQHFGDILSGFVGSLASMTEISDLP 431
Query: 422 SHLRRACIAHGGALTTLYEYIPRMRKSDSEDVSDN-LAKGHSNKKKHNLLVSLSGHLFDQ 480
+HL+RACI++ G LT+LYEYIPRMRKS+ E+ DN +A G S+++ N+LVSLSGHLFD+
Sbjct: 432 AHLKRACISYRGELTSLYEYIPRMRKSNPEEAQDNIIANGVSSQRTFNILVSLSGHLFDK 491
Query: 481 FLINEALDIIEAAGGSFHLVKCQVGQSTEALSFSELEVGADDSAVLDQIIDSLTSLANAS 540
FLINEALD+IEAAGGSFHL KC++GQS +A S+SELEVGADD VLDQIIDSLT LAN +
Sbjct: 492 FLINEALDMIEAAGGSFHLAKCELGQSADAESYSELEVGADDKRVLDQIIDSLTRLANPN 551
Query: 541 ENNRDQISGINRISLRIGKV-QETATQKGPGTKGTSSVLIIGAGRVCRPAAELLASFGS- 598
E+ N+ISL+IGKV QE ++ P S VLI+GAGRVCRPAA+ LAS +
Sbjct: 552 EDYISPHREANKISLKIGKVQQENEIKEKPEMTKKSGVLILGAGRVCRPAADFLASVRTI 611
Query: 599 PSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLCKCIS 658
S Q KT D E + D+ V+VASLYLKDA+E +EGI + EAV+LDVSD +SL K +S
Sbjct: 612 SSQQWYKTYFGADSEEKTDVHVIVASLYLKDAKETVEGISDVEAVRLDVSDSESLLKYVS 671
Query: 659 QVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGEMGLDP 718
QV++V+SLLPASCH +VA CIE KKHLVTASY+DD S L EKAK AGITILGEMGLDP
Sbjct: 672 QVDVVLSLLPASCHAVVAKTCIELKKHLVTASYVDDETSMLHEKAKSAGITILGEMGLDP 731
Query: 719 GIDHMMAMKMINHAHVRKGKIKSFTSYCGGLPSPAAANNPLAYKFSWSPAGAIRAGRNPA 778
GIDHMMAMKMIN AH++KGK+KSFTSYCGGLPSPAAANNPLAYKFSW+PAGAIRAG+NPA
Sbjct: 732 GIDHMMAMKMINDAHIKKGKVKSFTSYCGGLPSPAAANNPLAYKFSWNPAGAIRAGQNPA 791
Query: 779 IYLFNGKTVQVDGDSLYDSAEKFRIADLPAFALECLPNRNSLVYGDIYGIGKEASTIFRG 838
Y NG + VDG +LYDSA +FR+ +LPAFALEC PNR+SLVYG+ YGI EA+TIFRG
Sbjct: 792 KYKSNGDIIHVDGKNLYDSAARFRVPNLPAFALECFPNRDSLVYGEHYGIESEATTIFRG 851
Query: 839 TLRYEGFGEIMGTLGRIGFFSAETHPVLKQGSGPTFRMFLCEILKMDSQKMGEAPLGEKE 898
TLRYEGF IM TL ++GFF +E + VL G TF L IL D+ E GE+E
Sbjct: 852 TLRYEGFSMIMATLSKLGFFDSEANQVLSTGKRITFGALLSNILNKDADNESEPLAGEEE 911
Query: 899 ITERILSLGHCKERETASKAAKTIIFLGLHEQTEIPASCESPFSVTCLLMEEKLAYSSTE 958
I++RI+ LGH K ETA+KAAKTI+FLG +E+ E+P+ C+S F TC LMEEKLAYS E
Sbjct: 912 ISKRIIKLGHSK--ETAAKAAKTIVFLGFNEEREVPSLCKSVFDATCYLMEEKLAYSGNE 969
Query: 959 EDMVLLHHEVEVEFPDGQPSENNRATLLEFGKMKNGKMISAMALTVGIPAGIAAMLLLVN 1018
+DMVLLHHEVEVEF + + E + ATLLEFG +KNG+ +AMA TVGIPA I A+LL+ +
Sbjct: 970 QDMVLLHHEVEVEFLESKRIEKHTATLLEFGDIKNGQTTTAMAKTVGIPAAIGALLLIED 1029
Query: 1019 KIKTRGVLRPIEPEVYVPALDMLQAYGIKLVEKS 1052
KIKTRGVLRP+E EVY+PALD+LQAYGIKL+EK+
Sbjct: 1030 KIKTRGVLRPLEAEVYLPALDILQAYGIKLMEKA 1063
|
Bifunctional enzyme that catalyzes the first two steps in lysine degradation. The N-terminal and the C-terminal contain lysine-oxoglutarate reductase and saccharopine dehydrogenase activity, respectively. Negatively regulates free Lys accumulation in seeds. Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 5EC: .EC: 1EC: .EC: 9 |
| >sp|A8E657|AASS_BOVIN Alpha-aminoadipic semialdehyde synthase, mitochondrial OS=Bos taurus GN=AASS PE=2 SV=1 | Back alignment and function description |
|---|
Score = 341 bits (874), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 203/540 (37%), Positives = 301/540 (55%), Gaps = 58/540 (10%)
Query: 8 VVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPSTKRIHHDVLYEDVGCQ 67
V+ + E VN WERRAPL P H + + G ++++QPS +R HD Y G
Sbjct: 25 VMALRREDVNAWERRAPLAPRHVKGITNLGY------KVLIQPSNRRAIHDKEYVKAGGI 78
Query: 68 ISEDLSECGLVLGIKQPKLEMILPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYEL 127
+ ED+SE L+LG+K+P E ++P K YAFFSHT KAQ NM LLD+IL + + L DYE
Sbjct: 79 LQEDISEACLILGVKRPPEEKLMPKKTYAFFSHTIKAQEANMGLLDEILKQEIRLIDYEK 138
Query: 128 IVGDNGRRLLAFGKFAGRAGMIDFLHGLGQRYLSLGYSTPFLSLGASYMYSSLAAAKAAV 187
+V G R++AFG++AG AG+I+ LHG+G R L+LG+ TPF+ +G ++ Y + A AV
Sbjct: 139 MVDHRGIRVVAFGQWAGVAGIINILHGMGLRLLALGHHTPFMHIGMAHNYRNSGQAVQAV 198
Query: 188 ISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFGKAKDQ 247
G EIS +P I PL F+FTG+GNVS GAQEIF LP +VEP L E+ Q
Sbjct: 199 RDAGYEISLGLMPKSIGPLTFVFTGTGNVSKGAQEIFNELPCEYVEPHELKEV-----SQ 253
Query: 248 HGGASKRIFQVYGCVVTSEDMVEHKDPTKG-FDKADYYAHPEHYNPVFHKKIAPYASVIV 306
+G K VYG V++ + K T G +D +Y +PE Y F+ IAPY + ++
Sbjct: 254 NGDLRK----VYGTVLSRHHHLVRK--TDGVYDPVEYDKYPERYISRFNTDIAPYTTCLI 307
Query: 307 NCMYWEQRFPRLLSTQQLQDLVR---------KGCP-----LVGISDITCDIGGSLEFVN 352
N +YWEQ PRLL+ Q Q L+ +GCP LV I DI+ D GGS+EF+
Sbjct: 308 NGIYWEQNTPRLLTRQDAQSLLAPGKSPVAGVEGCPALPHKLVAICDISADTGGSIEFMT 367
Query: 353 RTTSIDSSFFRYDPLSDSYHDDLEGNGLVCQAVDTLPTEFAKEASQHFGDILLEFIGSL- 411
T+I+ F YD HD +EG+G++ ++D LP + E++++FGD+L ++ +
Sbjct: 368 ECTTIERPFCMYDADQHIIHDSVEGSGILMCSIDNLPAQLPIESTEYFGDMLYPYVEEMI 427
Query: 412 ----SSTVDFTELPSHLRRACIAHGGALTTLYEYIPRMRKSDSEDVSDNLAKGHSNKKKH 467
+ ++ +R A IA G L+ Y+YI ++R++ A+ S K
Sbjct: 428 LSDATQPLESQNFSPVVRDAVIASNGMLSNKYKYIQKLRENREH------AQSLSMGTKK 481
Query: 468 NLLVSLSGH----LFDQFLINEALDI---------IEAAGGSFHL--VKCQVGQSTEALS 512
+LV SG+ + + L +++++I IE G +++ V VG+ E LS
Sbjct: 482 KVLVLGSGYVSEPVLEYLLRDDSIEITVGSDMKNQIEQLGKKYNINPVSLHVGKQEEKLS 541
|
Bifunctional enzyme that catalyzes the first two steps in lysine degradation. The N-terminal and the C-terminal contain lysine-oxoglutarate reductase and saccharopine dehydrogenase activity, respectively. Bos taurus (taxid: 9913) EC: 1 EC: . EC: 5 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q99K67|AASS_MOUSE Alpha-aminoadipic semialdehyde synthase, mitochondrial OS=Mus musculus GN=Aass PE=2 SV=1 | Back alignment and function description |
|---|
Score = 336 bits (861), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 184/461 (39%), Positives = 267/461 (57%), Gaps = 37/461 (8%)
Query: 8 VVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPSTKRIHHDVLYEDVGCQ 67
V+ + E VN WERRAPL P H + G ++++QPS +R HD Y G
Sbjct: 25 VMALRREDVNAWERRAPLAPKHIKGITKLG------YKVLIQPSNRRAIHDKEYVRAGGI 78
Query: 68 ISEDLSECGLVLGIKQPKLEMILPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYEL 127
+ ED++E L+LG+K+P E ++ K YAFFSHT KAQ NM LLD++L + + L DYE
Sbjct: 79 LQEDITEACLILGVKRPPEEKLMSKKTYAFFSHTIKAQEANMNLLDEVLKQEIRLIDYEK 138
Query: 128 IVGDNGRRLLAFGKFAGRAGMIDFLHGLGQRYLSLGYSTPFLSLGASYMYSSLAAAKAAV 187
+V G R++AFG++AG AGMI+ LHG+G R L+LG+ TPF+ LG ++ Y + + A AV
Sbjct: 139 MVDHRGSRIVAFGQWAGVAGMINILHGMGLRLLALGHHTPFMHLGMAHNYRNSSQAVQAV 198
Query: 188 ISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFGKAKDQ 247
G EIS +P I PL F+FTG+GNVS GAQE+F LP +VEP L E+ K D
Sbjct: 199 RDAGYEISLGLMPKSIGPLTFVFTGTGNVSKGAQEVFNELPCEYVEPHELREV-SKTGD- 256
Query: 248 HGGASKRIFQVYGCVVTSEDMVEHKDPTKG-FDKADYYAHPEHYNPVFHKKIAPYASVIV 306
+ +VYG V++ + K T G +D +Y +PE Y F+ IAPY + ++
Sbjct: 257 -------LRKVYGTVLSRHHHLVRK--TDGVYDPVEYEKYPERYTSRFNTDIAPYTTCLI 307
Query: 307 NCMYWEQRFPRLLSTQQLQDLV---------RKGCP-----LVGISDITCDIGGSLEFVN 352
N +YWEQ PRLL+ Q Q L+ +GCP LV I DI+ D GGS++F+
Sbjct: 308 NGIYWEQNTPRLLTRQDAQSLLVPVKSSVVPVEGCPELPHKLVAICDISADTGGSIDFMT 367
Query: 353 RTTSIDSSFFRYDPLSDSYHDDLEGNGLVCQAVDTLPTEFAKEASQHFGDILLEFIGSL- 411
T+I+ F YD HD +EG+G++ ++D LP + EA+++FGD+L ++ +
Sbjct: 368 ECTTIERPFCMYDADQQIIHDSVEGSGILMCSIDNLPAQLPIEATEYFGDMLYPYVEEML 427
Query: 412 ----SSTVDFTELPSHLRRACIAHGGALTTLYEYIPRMRKS 448
S ++ +R A I G LT Y+YI ++R+S
Sbjct: 428 LSDASQPLESQNFSPVVRDAVITSNGLLTDKYKYIQKLRES 468
|
Bifunctional enzyme that catalyzes the first two steps in lysine degradation. The N-terminal and the C-terminal contain lysine-oxoglutarate reductase and saccharopine dehydrogenase activity, respectively. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 5 EC: . EC: 1 EC: . EC: 9 |
| >sp|A2VCW9|AASS_RAT Alpha-aminoadipic semialdehyde synthase, mitochondrial OS=Rattus norvegicus GN=Aass PE=2 SV=1 | Back alignment and function description |
|---|
Score = 334 bits (856), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 184/461 (39%), Positives = 266/461 (57%), Gaps = 37/461 (8%)
Query: 8 VVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPSTKRIHHDVLYEDVGCQ 67
V+ + E VN WERRAPL P H + G ++++QPS +R HD Y G
Sbjct: 25 VMALRREDVNAWERRAPLAPKHIKGITKLG------YKVLIQPSNRRAIHDKEYVRAGGI 78
Query: 68 ISEDLSECGLVLGIKQPKLEMILPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYEL 127
+ ED++E L+LG+K+P E ++ K YAFFSHT KAQ NM LLD++L + + L DYE
Sbjct: 79 LQEDITEACLILGVKRPPEEKLMSKKTYAFFSHTIKAQEANMSLLDEVLKQEIRLIDYEK 138
Query: 128 IVGDNGRRLLAFGKFAGRAGMIDFLHGLGQRYLSLGYSTPFLSLGASYMYSSLAAAKAAV 187
+V G R++AFG +AG AGMI+ LHG+G R L+LG+ TPF+ LG ++ Y + + A AV
Sbjct: 139 MVDHRGSRIVAFGHWAGVAGMINILHGMGLRLLALGHHTPFMHLGMAHNYRNSSQAVQAV 198
Query: 188 ISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFGKAKDQ 247
G EIS +P I PL F+FTG+GNVS GAQE+F LP +VEP L E+ K D
Sbjct: 199 RDAGYEISLGLMPKSIGPLTFVFTGTGNVSKGAQEVFNELPCEYVEPHELKEV-SKTGD- 256
Query: 248 HGGASKRIFQVYGCVVTSEDMVEHKDPTKG-FDKADYYAHPEHYNPVFHKKIAPYASVIV 306
+ +VYG V++ + K T G +D +Y +PE Y F+ IAPY + ++
Sbjct: 257 -------LRKVYGTVLSRHHHLVRK--TDGVYDPVEYEKYPERYISRFNADIAPYTTCLI 307
Query: 307 NCMYWEQRFPRLLSTQQLQDLV---------RKGCP-----LVGISDITCDIGGSLEFVN 352
N +YWEQ PRLL+ Q Q L+ +GCP LV I DI+ D GGS++F+
Sbjct: 308 NGIYWEQNTPRLLTRQDAQSLLVPVKSSVVPVEGCPELPHKLVAICDISADTGGSIDFMT 367
Query: 353 RTTSIDSSFFRYDPLSDSYHDDLEGNGLVCQAVDTLPTEFAKEASQHFGDILLEFIGSL- 411
T+I+ F YD HD +EG+G++ ++D LP + EA+++FGD+L ++ +
Sbjct: 368 ECTTIERPFCMYDADQHIIHDSVEGSGILMCSIDNLPAQLPIEATEYFGDMLYPYVEEML 427
Query: 412 ----SSTVDFTELPSHLRRACIAHGGALTTLYEYIPRMRKS 448
S ++ +R A I G LT Y+YI ++R+S
Sbjct: 428 LSDASQPLESQNFSPVVRDAVITSNGLLTDKYKYIQKLRES 468
|
Bifunctional enzyme that catalyzes the first two steps in lysine degradation. The N-terminal and the C-terminal contain lysine-oxoglutarate reductase and saccharopine dehydrogenase activity, respectively. Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 5 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q9UDR5|AASS_HUMAN Alpha-aminoadipic semialdehyde synthase, mitochondrial OS=Homo sapiens GN=AASS PE=1 SV=1 | Back alignment and function description |
|---|
Score = 332 bits (852), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 194/495 (39%), Positives = 279/495 (56%), Gaps = 43/495 (8%)
Query: 8 VVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPSTKRIHHDVLYEDVGCQ 67
V+ + E VN WERRAPL P H + + G ++++QPS +R HD Y G
Sbjct: 25 VLAVRREDVNAWERRAPLAPKHIKGITNLGY------KVLIQPSNRRAIHDKDYVKAGGI 78
Query: 68 ISEDLSECGLVLGIKQPKLEMILPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYEL 127
+ ED+SE L+LG+K+P E ++ K YAFFSHT KAQ NM LLD+IL + + L DYE
Sbjct: 79 LQEDISEACLILGVKRPPEEKLMSRKTYAFFSHTIKAQEANMGLLDEILKQEIRLIDYEK 138
Query: 128 IVGDNGRRLLAFGKFAGRAGMIDFLHGLGQRYLSLGYSTPFLSLGASYMYSSLAAAKAAV 187
+V G R++AFG++AG AGMI+ LHG+G R L+LG+ TPF+ +G ++ Y + + A AV
Sbjct: 139 MVDHRGVRVVAFGQWAGVAGMINILHGMGLRLLALGHHTPFMHIGMAHNYRNSSQAVQAV 198
Query: 188 ISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFGKAKDQ 247
G EIS +P I PL F+FTG+GNVS GAQ IF LP +VEP L E+ Q
Sbjct: 199 RDAGYEISLGLMPKSIGPLTFVFTGTGNVSKGAQAIFNELPCEYVEPHELKEV-----SQ 253
Query: 248 HGGASKRIFQVYGCVVTS-EDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAPYASVIV 306
G K VYG V++ +V D +D A+Y HPE Y F+ IAPY + ++
Sbjct: 254 TGDLRK----VYGTVLSRHHHLVRKTDAV--YDPAEYDKHPERYISRFNTDIAPYTTCLI 307
Query: 307 NCMYWEQRFPRLLSTQQLQDLVR---------KGCP-----LVGISDITCDIGGSLEFVN 352
N +YWEQ PRLL+ Q Q L+ +GCP LV I DI+ D GGS+EF+
Sbjct: 308 NGIYWEQNTPRLLTRQDAQSLLAPGKFSPAGVEGCPALPHKLVAICDISADTGGSIEFMT 367
Query: 353 RTTSIDSSFFRYDPLSDSYHDDLEGNGLVCQAVDTLPTEFAKEASQHFGDILLEFIGSL- 411
T+I+ F YD HD +EG+G++ ++D LP + EA++ FGD+L ++ +
Sbjct: 368 ECTTIEHPFCMYDADQHIIHDSVEGSGILMCSIDNLPAQLPIEATECFGDMLYPYVEEMI 427
Query: 412 ----SSTVDFTELPSHLRRACIAHGGALTTLYEYIPRMRKSDSEDVSDNLAKGHSNKKKH 467
+ ++ +R A I G L Y+YI +R +S + + +L+ G K
Sbjct: 428 LSDATQPLESQNFSPVVRDAVITSNGTLPDKYKYIQTLR--ESRERAQSLSMGTRRK--- 482
Query: 468 NLLVSLSGHLFDQFL 482
+LV SG++ + L
Sbjct: 483 -VLVLGSGYISEPVL 496
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Bifunctional enzyme that catalyzes the first two steps in lysine degradation. The N-terminal and the C-terminal contain lysine-ketoglutarate reductase and saccharopine dehydrogenase activity, respectively. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 5 EC: . EC: 1 EC: . EC: 9 |
| >sp|O59711|LYS9_SCHPO Saccharopine dehydrogenase [NADP(+), L-glutamate-forming] OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lys9 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 288 bits (737), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 172/477 (36%), Positives = 260/477 (54%), Gaps = 35/477 (7%)
Query: 576 SVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIE 635
S+L++G+G V P E L+ + + + VA L AE I
Sbjct: 3 SILLLGSGFVAHPTLEYLSR-------------------RKENNITVACRTLSKAEAFIN 43
Query: 636 GIPNAEAVQLDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDS 695
GIPN++A+ LDV+D +L K +S+ ++ ISL+P + H V A I+ KH+ T SY++
Sbjct: 44 GIPNSKAIALDVNDEAALEKAVSEHDLTISLIPYTYHATVMKAAIKHGKHVCTTSYVNPK 103
Query: 696 MSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMINHAHVRKGKIKSFTSYCGGLPSPAAA 755
M++L+E A AG + E+G+DPGIDH+ A+K I H GKIKSF SYCGGLP+P +
Sbjct: 104 MAELEEAAIKAGSICMNEIGVDPGIDHLYAIKTIEEVHKAGGKIKSFLSYCGGLPAPEDS 163
Query: 756 NNPLAYKFSWSPAGAIRAGRNPAIYLFNGKTVQVDGDSLYDSAEKFRIADLPAFALECLP 815
NNPL YKFSWS G + A RN A + NGK V++DG L ++A+ + I P +A C P
Sbjct: 164 NNPLGYKFSWSSRGVLLALRNSAKFYENGKLVEIDGKDLMETAKPYFI--YPGYAFVCYP 221
Query: 816 NRNSLVYGDIYGIGKEASTIFRGTLRYEGFGEIMGTLGRIGFFSAETHPVLK-QGSGPTF 874
NR+S VY + Y I EA TI RGTLRY+GF E + L +GF L + +
Sbjct: 222 NRDSTVYQERYQI-PEAETIIRGTLRYQGFPEFIHCLVDMGFLDETAQEYLSPEAPALPW 280
Query: 875 RMFLCEILKMDSQKMGEAPLGEKEITERILSLGHCKERETASKAAKTIIFLGLHEQTEIP 934
+ ++K +S E ++ ++I S+ K+ + + + +LG+ +
Sbjct: 281 KEVTARVIKAESS-------SEADLIKKISSIHKFKDEDDKKRILNGLKWLGMFSSKPVT 333
Query: 935 ASCESPFSVTCLLMEEKLAYSSTEEDMVLLHHEVEVEFPDGQPSENNRATLLEFGKMKNG 994
+P C +EE + Y E DM++L H+ EVE +G+ + TLL++G + NG
Sbjct: 334 PRG-NPLDTLCATLEELMQYEEGERDMLILQHKFEVETKEGK-RQTRTCTLLDYG-VPNG 390
Query: 995 KMISAMALTVGIPAGIAAMLLLVNKIKTRGVLRPIEPEVYVPALDMLQAYGIKLVEK 1051
++MA VG+P G+A +L I T GVL P + ++ P +D L GI+L E+
Sbjct: 391 --YTSMAKLVGVPCGVATQQILDGVINTPGVLAPNDMKLCGPLIDTLAKEGIRLEEE 445
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 1 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 EC: 0 |
| >sp|Q9P4R4|LYS9_MAGO7 Saccharopine dehydrogenase [NADP(+), L-glutamate-forming] OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=LYS3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 287 bits (735), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 174/480 (36%), Positives = 258/480 (53%), Gaps = 35/480 (7%)
Query: 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEE 632
T SVL++G+G V RP ++L G I+V VA L+ A++
Sbjct: 2 ATKSVLMLGSGFVTRPTLDVLTDSG--------------------IKVTVACRTLESAKK 41
Query: 633 VIEGIPNAEAVQLDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYI 692
+ G+ ++ + LDV+D +L +++ ++VISL+P + H V + I KKH+VT SY+
Sbjct: 42 LSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFHATVIKSAIRQKKHVVTTSYV 101
Query: 693 DDSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMINHAHVRKGKIKSFTSYCGGLPSP 752
+M +LD+ AK AGIT++ E+GLDPGIDH+ A+K I H GKIK+F SYCGGLP+P
Sbjct: 102 SPAMMELDQAAKDAGITVMNEIGLDPGIDHLYAIKTIEEVHAAGGKIKTFLSYCGGLPAP 161
Query: 753 AAANNPLAYKFSWSPAGAIRAGRNPAIYLFNGKTVQVDGDSLYDSAEKFRIADLPAFALE 812
+++NPL YKFSWS G + A RN A + +GK V G L +A+ + I P FA
Sbjct: 162 ESSDNPLGYKFSWSSRGVLLALRNAASFYKDGKVTNVAGPELMATAKPYFI--YPGFAFV 219
Query: 813 CLPNRNSLVYGDIYGIGKEASTIFRGTLRYEGFGEIMGTLGRIGFFSAETHPVLKQGSGP 872
PNR+S Y + Y I EA I RGTLRY+GF + + L IGF S E P LK+
Sbjct: 220 AYPNRDSTPYKERYQI-PEADNIVRGTLRYQGFPQFIKVLVDIGFLSDEEQPFLKEAI-- 276
Query: 873 TFRMFLCEILKMDSQKMGEAPLGEKEITERILSLGHCKERETASKAAKTIIFLGLHEQTE 932
++ +I+K S E++I I+S + E + + +LG+ +
Sbjct: 277 PWKEATQKIVKASSA-------SEQDIVSTIVSNATFESTEEQKRIVAGLKWLGIFSDKK 329
Query: 933 IPASCESPFSVTCLLMEEKLAYSSTEEDMVLLHHEVEVEFPDGQPSENNRATLLEFGKMK 992
I + C +EEK+ + E D+V+L H+ E+E DG E ++L E+G
Sbjct: 330 ITPRGNA-LDTLCATLEEKMQFEEGERDLVMLQHKFEIENKDGS-RETRTSSLCEYGAPI 387
Query: 993 NGKMISAMALTVGIPAGIAAMLLLVNKIKTRGVLRPIEPEVYVPALDML-QAYGIKLVEK 1051
SAMA VG+P +A +L I RGVL P+ ++ P + L + YGI+ EK
Sbjct: 388 GSGGYSAMAKLVGVPCAVAVKFVLDGTISDRGVLAPMNSKINDPLMKELKEKYGIECKEK 447
|
Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) (taxid: 242507) EC: 1 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 EC: 0 |
| >sp|P38999|LYS9_YEAST Saccharopine dehydrogenase [NADP(+), L-glutamate-forming] OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LYS9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 273 bits (698), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 168/478 (35%), Positives = 258/478 (53%), Gaps = 38/478 (7%)
Query: 576 SVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIE 635
+VL++G+G V +P + LA+ +DI V VA L +A+ + +
Sbjct: 4 NVLLLGSGFVAQPVIDTLAA-------------------NDDINVTVACRTLANAQALAK 44
Query: 636 GIPNAEAVQLDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDS 695
++A+ LDV+D +L K ++ ++VISL+P + H V + I K +VT+SYI +
Sbjct: 45 P-SGSKAISLDVTDDSALDKVLADNDVVISLIPYTFHPNVVKSAIRTKTDVVTSSYISPA 103
Query: 696 MSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMINHAHVRKGKIKSFTSYCGGLPSPAAA 755
+ +L+ + AGIT++ E+GLDPGIDH+ A+K I+ H GK+KSF SYCGGLP+P +
Sbjct: 104 LRELEPEIVKAGITVMNEIGLDPGIDHLYAVKTIDEVHRAGGKLKSFLSYCGGLPAPEDS 163
Query: 756 NNPLAYKFSWSPAGAIRAGRNPAIYLFNGKTVQVDGDSLYDSAEKFRIADLPAFALECLP 815
+NPL YKFSWS G + A RN A Y +GK V + L +A+ + I P +A C P
Sbjct: 164 DNPLGYKFSWSSRGVLLALRNSAKYWKDGKIETVSSEDLMATAKPYFI--YPGYAFVCYP 221
Query: 816 NRNSLVYGDIYGIGKEASTIFRGTLRYEGFGEIMGTLGRIGFFSAETHPVLKQGSGPTFR 875
NR+S ++ D+Y I EA T+ RGTLRY+GF E + L +G + + + +
Sbjct: 222 NRDSTLFKDLYHI-PEAETVIRGTLRYQGFPEFVKALVDMGMLKDDANEIFSK------P 274
Query: 876 MFLCEILKMDSQKMGEAPLGEKEITERILSLGHCKERETASKAAKTIIFLGLHEQTEIPA 935
+ E LK Q +G ++++ I S K+ E + +LGL +I
Sbjct: 275 IAWNEALK---QYLGAKSTSKEDLIASIDSKATWKDDEDRERILSGFAWLGLFSDAKITP 331
Query: 936 SCESPFSVTCLLMEEKLAYSSTEEDMVLLHHEVEVEFPDGQPSENNRATLLEFGKMKNGK 995
+ C +EE + Y E DMV+L H+ +E+ DG +E +TL+++GK+
Sbjct: 332 RGNA-LDTLCARLEELMQYEDNERDMVVLQHKFGIEWADGT-TETRTSTLVDYGKVGG-- 387
Query: 996 MISAMALTVGIPAGIAAMLLLVNKIKTRGVLRPIEPEVYVPALDMLQ-AYGIKLVEKS 1052
S+MA TVG P IA +L IK G+L P PE+ P + L+ YGI L EK+
Sbjct: 388 -YSSMAATVGYPVAIATKFVLDGTIKGPGLLAPYSPEINDPIMKELKDKYGIYLKEKT 444
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 1 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 EC: 0 |
| >sp|Q54NG9|SCPDH_DICDI Probable saccharopine dehydrogenase [NADP(+), L-glutamate-forming] OS=Dictyostelium discoideum GN=sdh PE=2 SV=1 | Back alignment and function description |
|---|
Score = 272 bits (695), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 169/495 (34%), Positives = 262/495 (52%), Gaps = 44/495 (8%)
Query: 576 SVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIE 635
++L++G+G V +PA + L + D V + SL+ + + + +
Sbjct: 3 NILLLGSGFVAKPALDYLLK-------------------REDYFVTIVSLFQNELDSITK 43
Query: 636 G--IPNAEAVQLDVSDH-KSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYI 692
G + +QLDV + L + + + VISL+PA+ H VA CI+ K HLVTASYI
Sbjct: 44 GHDTSKFKTIQLDVMNKLNELEEYFPKSDCVISLIPATLHSTVAKLCIKHKTHLVTASYI 103
Query: 693 DDSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMINHAHVRKGKIKSFTSYCGGLPSP 752
D M L E+AK AG+ +L E+GLDPGIDHM +MK+I+HA GK+ SF S+CG LPS
Sbjct: 104 SDDMKALSEEAKEAGVLLLNELGLDPGIDHMSSMKIIDHAKENGGKVTSFVSWCGALPST 163
Query: 753 AAANNPLAYKFSWSPAGAIRAGRNPAIYLFNGKTVQVDGDSLYDSAEKFRIADLPAFALE 812
A+NP YKFSWSP G + + A +L+ G +V + + + + D +E
Sbjct: 164 ECADNPFGYKFSWSPRGVLSSATLSANFLWEGHNEEVPANIKWAVLQPIVVEDSNGVKME 223
Query: 813 C--LPNRNSLVYGDIYGI-GKEASTIFRGTLRYE-GFGEIMGTLGRIGFFSAETHPVLKQ 868
+PNRNS Y + Y + K+ +T+FRGTLR++ GFG ++ L +G FS E L
Sbjct: 224 FDGVPNRNSFPYIEQYNLNAKDVTTMFRGTLRWKGGFGIMIRALVAVGLFSTEVDARLAV 283
Query: 869 GSGPTFRMFLCEILKMDSQKMGEAPLGEKEITERILSLGHCKE-------------RETA 915
G ++R +L ++L + E I E L ++ +
Sbjct: 284 EGGISWRNYLVQLLGCNDNDSDLLYCVESTIKEYFEKLKTERDGLQFHFPIIPRDIEKDV 343
Query: 916 SKAAKTIIFLGLHEQTEIPASCESPFSVTCLLMEEKLAYSSTEEDMVLLHHEVEVEFPDG 975
A + +LGL E + +P C L+E+KL+Y + E D+V+L H V++ D
Sbjct: 344 QHAVEGFKWLGLLSADEKVVNKNTPIDSLCALLEKKLSYKAGERDVVVLEHNFVVQYAD- 402
Query: 976 QPSENNRATLLEFGKMKNGKMISAMALTVGIPAGIAAMLLLVNKIKTRGVLRPIEPEVYV 1035
+E ++L+ +G + NG SA +LTVG+P GIA L+ K TRGV+ P+ PE Y+
Sbjct: 403 -RTEKEVSSLICYG-IPNGS--SATSLTVGVPVGIATELIADGKTTTRGVVGPVTPEFYL 458
Query: 1036 PALDMLQAYGIKLVE 1050
P L+ L++ I+++E
Sbjct: 459 PILEKLKSENIEMIE 473
|
Dictyostelium discoideum (taxid: 44689) EC: 1 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 EC: 0 |
| >sp|Q9AJC6|LYSDH_GEOSE Lysine 6-dehydrogenase OS=Geobacillus stearothermophilus GN=lysDH PE=1 SV=1 | Back alignment and function description |
|---|
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 119/286 (41%), Gaps = 55/286 (19%)
Query: 577 VLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIR-VLVASLYLKDAEEVIE 635
VL++GAG + + AA D D+ V +A + L AE+ +
Sbjct: 3 VLVLGAGLMGKEAAR-------------------DLVQSQDVEAVTLADVDLAKAEQTVR 43
Query: 636 GIPNAE--AVQLDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVT----A 689
+ + + AV++D D + L + ++V++ L + VA IE H V
Sbjct: 44 QLHSKKLAAVRVDAGDPQQLAAAMKGHDVVVNALFYQFNETVAKTAIETGVHSVDLGGHI 103
Query: 690 SYIDDSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMINHAHVRKGKIKSFTSYCGGL 749
+I D + +L E+A+ AG+TI+ ++G+ PG+ ++++ + + +++S Y GG+
Sbjct: 104 GHITDRVLELHERAQAAGVTIIPDLGVAPGMINILS----GYGASQLDEVESILLYVGGI 159
Query: 750 PSPAAANNPLAYKFSWSPAGAIRAGRNPAIYLFNGKTVQVDGDSLYDSAEKFRIADLPAF 809
P PL Y +S G + +PA+ + NG+ +V S + R L AF
Sbjct: 160 --PVRPEPPLEYNHVFSLEGLLDHYTDPALIIRNGQKQEVPSLSEVEPIYFDRFGPLEAF 217
Query: 810 AL--------ECLPNRNSLVYGDIYGIGKEASTIFRGTLRYEGFGE 847
PN L Y T+RY G E
Sbjct: 218 HTSGGTSTLSRSFPNLKRLEY---------------KTIRYRGHAE 248
|
Catalyzes the oxidative deamination of L-lysine in the presence of NAD. Can also use (S)-(2-aminoethyl)-L-cysteine as a substrate, but more slowly. Can use both NAD and NADP but the preferred substrate is NAD. Geobacillus stearothermophilus (taxid: 1422) EC: 1 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1053 | ||||||
| 255550269 | 1050 | aminoadipic semialdehyde synthase, putat | 0.992 | 0.995 | 0.772 | 0.0 | |
| 23193174 | 1052 | bifunctional lysine-ketoglutarate reduct | 0.994 | 0.995 | 0.758 | 0.0 | |
| 359484440 | 1052 | PREDICTED: alpha-aminoadipic semialdehyd | 0.995 | 0.996 | 0.768 | 0.0 | |
| 357479287 | 1048 | Lysine-ketoglutarate reductase/saccharop | 0.994 | 0.999 | 0.734 | 0.0 | |
| 356565590 | 1048 | PREDICTED: alpha-aminoadipic semialdehyd | 0.993 | 0.998 | 0.740 | 0.0 | |
| 356547992 | 1048 | PREDICTED: alpha-aminoadipic semialdehyd | 0.993 | 0.998 | 0.739 | 0.0 | |
| 449452622 | 1050 | PREDICTED: alpha-aminoadipic semialdehyd | 0.992 | 0.995 | 0.711 | 0.0 | |
| 2052508 | 1064 | lysine-ketoglutarate reductase/saccharop | 0.994 | 0.984 | 0.709 | 0.0 | |
| 2052510 | 1064 | lysine-ketoglutarate reductase/saccharop | 0.994 | 0.984 | 0.709 | 0.0 | |
| 18418158 | 1064 | lysine-ketoglutarate reductase/saccharop | 0.994 | 0.984 | 0.708 | 0.0 |
| >gi|255550269|ref|XP_002516185.1| aminoadipic semialdehyde synthase, putative [Ricinus communis] gi|223544671|gb|EEF46187.1| aminoadipic semialdehyde synthase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1707 bits (4420), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 813/1052 (77%), Positives = 924/1052 (87%), Gaps = 7/1052 (0%)
Query: 3 MLGNGVVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPSTKRIHHDVLYE 62
MLGNGVVGILSESVNKWERR PLTPSHCARLLHSGRD++GVARI+VQPSTKRIHHD +YE
Sbjct: 1 MLGNGVVGILSESVNKWERRVPLTPSHCARLLHSGRDRTGVARIIVQPSTKRIHHDAMYE 60
Query: 63 DVGCQISEDLSECGLVLGIKQPKLEMILPDKAYAFFSHTHKAQRENMPLLDKILAERVSL 122
DVGC+ISEDLSECGL+LGIKQPKLEMILPD+AYAFFSHTHKAQ+ENMPLLDKILAER SL
Sbjct: 61 DVGCEISEDLSECGLILGIKQPKLEMILPDRAYAFFSHTHKAQKENMPLLDKILAERASL 120
Query: 123 YDYELIVGDNGRRLLAFGKFAGRAGMIDFLHGLGQRYLSLGYSTPFLSLGASYMYSSLAA 182
YDYELIVGD+G+RLLAFGK+AGRAG++DF GLGQRYLSLGYSTPFLSLG+SYMYSSLAA
Sbjct: 121 YDYELIVGDHGKRLLAFGKYAGRAGLVDFFRGLGQRYLSLGYSTPFLSLGSSYMYSSLAA 180
Query: 183 AKAAVISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFG 242
AKAAVISVGEEIS+LGLPSGICPLVFIFTGSGNVS GAQEIFKLLPHTFVEPSRL ELF
Sbjct: 181 AKAAVISVGEEISSLGLPSGICPLVFIFTGSGNVSQGAQEIFKLLPHTFVEPSRLAELFA 240
Query: 243 KAKDQH--GGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAP 300
+A+D H SKR++QVYGCVVTS+DMVEH DP+K FDKADYYAHPEHY P+FH+KIAP
Sbjct: 241 QARDPHQPSRTSKRVYQVYGCVVTSQDMVEHIDPSKTFDKADYYAHPEHYKPIFHEKIAP 300
Query: 301 YASVIVNCMYWEQRFPRLLSTQQLQDLVRKGCPLVGISDITCDIGGSLEFVNRTTSIDSS 360
YASVIVNCMYWE+RFPRLLSTQQLQDL+RKGCPLVGI+DITCDI GS+EF+N+TTSID
Sbjct: 301 YASVIVNCMYWEKRFPRLLSTQQLQDLMRKGCPLVGIADITCDIEGSIEFINQTTSIDYP 360
Query: 361 FFRYDPLSDSYHDDLEGNGLVCQAVDTLPTEFAKEASQHFGDILLEFIGSLSSTVDFTEL 420
FFRYDPL DSYH D+EGNG++C +VD LPTEFAKEASQHFGDIL +FIGSL+ST D +L
Sbjct: 361 FFRYDPLKDSYHQDMEGNGIICSSVDILPTEFAKEASQHFGDILSQFIGSLASTTDTNKL 420
Query: 421 PSHLRRACIAHGGALTTLYEYIPRMRKSDSEDVSDNLAKGHSNKKKHNLLVSLSGHLFDQ 480
PSHLRRACIAHGG + L+EYIPRMR SDSED+ +NL +S+KKK N+LVSLSGHLFD+
Sbjct: 421 PSHLRRACIAHGGEIAPLFEYIPRMRNSDSEDMPENL---NSSKKKFNILVSLSGHLFDK 477
Query: 481 FLINEALDIIEAAGGSFHLVKCQVGQSTEALSFSELEVGADDSAVLDQIIDSLTSLANAS 540
FLINEALDIIEAAGG+FHLVKC VGQS +A S+SELEVGADD VLDQI+DSLTSLAN
Sbjct: 478 FLINEALDIIEAAGGAFHLVKCHVGQSADATSYSELEVGADDREVLDQILDSLTSLANPD 537
Query: 541 ENNRDQISGINRISLRIGKVQETATQKGPGTKGTSSVLIIGAGRVCRPAAELLASFGS-P 599
EN N+ L++GKVQE ++K TK +SVLIIGAG VCRPAAE LAS G+
Sbjct: 538 ENQGHLDKEANKFFLKVGKVQENGSRKDCDTKRKASVLIIGAGHVCRPAAEFLASIGNIS 597
Query: 600 SHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLCKCISQ 659
S + K C++TDFE QND++V+VASLYLKDAEE+I+GIPNA AVQLDV DH+ LCK ISQ
Sbjct: 598 SREWYKACLDTDFEEQNDVQVIVASLYLKDAEEIIDGIPNATAVQLDVMDHERLCKYISQ 657
Query: 660 VEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGEMGLDPG 719
VE+V+SLLP SCH+++ANACI+ KHLVTASY+DDSMS LDEKAK A ITILGEMGLDPG
Sbjct: 658 VEVVVSLLPPSCHIVIANACIKLNKHLVTASYVDDSMSALDEKAKAADITILGEMGLDPG 717
Query: 720 IDHMMAMKMINHAHVRKGKIKSFTSYCGGLPSPAAANNPLAYKFSWSPAGAIRAGRNPAI 779
IDHMMAMKMIN AHVRKG++KSFTSYCG LPSPAAANNPLAYKFSW+PAGAIRAGRNPA
Sbjct: 718 IDHMMAMKMINQAHVRKGRVKSFTSYCGALPSPAAANNPLAYKFSWNPAGAIRAGRNPAT 777
Query: 780 YLFNGKTVQVDGDSLYDSAEKFRIADLPAFALECLPNRNSLVYGDIYGIGKEASTIFRGT 839
Y+ +G+ V V+GD+LYDSA K R+ DLPAFALECLPNRNSLVYG +YGI +EASTIFRGT
Sbjct: 778 YMSHGEIVNVEGDNLYDSAVKLRLPDLPAFALECLPNRNSLVYGKVYGI-EEASTIFRGT 836
Query: 840 LRYEGFGEIMGTLGRIGFFSAETHPVLKQGSGPTFRMFLCEILKMDSQKMGEAPLGEKEI 899
+RYEGFGEIMGTL +IG FS E+H L+ TF+ FLCE+L + + LGE++I
Sbjct: 837 IRYEGFGEIMGTLAKIGLFSTESHSYLRCKQRTTFQGFLCELLDIHGEITDGVLLGEEDI 896
Query: 900 TERILSLGHCKERETASKAAKTIIFLGLHEQTEIPASCESPFSVTCLLMEEKLAYSSTEE 959
TE++++LGHCKE+ETA KAAKTII+LGLHEQTEIPASC+SPF VTC MEE+L YSS E+
Sbjct: 897 TEKLVTLGHCKEKETAVKAAKTIIYLGLHEQTEIPASCKSPFDVTCFRMEERLTYSSAEQ 956
Query: 960 DMVLLHHEVEVEFPDGQPSENNRATLLEFGKMKNGKMISAMALTVGIPAGIAAMLLLVNK 1019
DMVLLHHEVEVEFPDG+ +E +R TLLEFG K GK I+AMALTVGIPA I A+LLL NK
Sbjct: 957 DMVLLHHEVEVEFPDGKRTEYHRGTLLEFGTTKKGKTITAMALTVGIPAAIGALLLLENK 1016
Query: 1020 IKTRGVLRPIEPEVYVPALDMLQAYGIKLVEK 1051
IKT+GV+RPIEPEVYVPALD+LQA+GIKL+EK
Sbjct: 1017 IKTKGVVRPIEPEVYVPALDILQAHGIKLIEK 1048
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|23193174|gb|AAN14410.1| bifunctional lysine-ketoglutarate reductase/saccharopine dehydrogenase [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 1682 bits (4357), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 799/1054 (75%), Positives = 923/1054 (87%), Gaps = 7/1054 (0%)
Query: 3 MLGNGVVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPSTKRIHHDVLYE 62
MLGNGVVGILSES KWERR PLTPSHCARLLHSGR+K+G+ARI+VQPST+RIHHD LYE
Sbjct: 1 MLGNGVVGILSESSKKWERRVPLTPSHCARLLHSGREKTGIARIIVQPSTRRIHHDSLYE 60
Query: 63 DVGCQISEDLSECGLVLGIKQPKLEMILPDKAYAFFSHTHKAQRENMPLLDKILAERVSL 122
DVGC IS+DLSECGL+LGIKQPKL+MILP++AYAFFSHTHKAQ+ENMPLLDKILAERVSL
Sbjct: 61 DVGCHISDDLSECGLILGIKQPKLDMILPNRAYAFFSHTHKAQKENMPLLDKILAERVSL 120
Query: 123 YDYELIVGDNGRRLLAFGKFAGRAGMIDFLHGLGQRYLSLGYSTPFLSLGASYMYSSLAA 182
YDYELIVGDNG+RLLAFGK+AGRAGMID L GLGQRYLSLGYSTPFLSLGASYMY SLAA
Sbjct: 121 YDYELIVGDNGKRLLAFGKYAGRAGMIDLLRGLGQRYLSLGYSTPFLSLGASYMYPSLAA 180
Query: 183 AKAAVISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFG 242
AKAAVI+VGEEI++ GLPSGICP++F+FTGSGNVS+GAQEIFKLLP FVEPSRLPELFG
Sbjct: 181 AKAAVITVGEEIASQGLPSGICPVIFVFTGSGNVSVGAQEIFKLLPQVFVEPSRLPELFG 240
Query: 243 KAKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAPYA 302
K ++ SKR+FQVYGC+VTS DMV HKDP+K F KADYYAHPEHY P+FH+KIAPYA
Sbjct: 241 KGRNV---TSKRVFQVYGCIVTSCDMVSHKDPSKTFGKADYYAHPEHYTPIFHEKIAPYA 297
Query: 303 SVIVNCMYWEQRFPRLLSTQQLQDLVRKGCPLVGISDITCDIGGSLEFVNRTTSIDSSFF 362
SVIVNCMYWE+RFPRLLS++Q+Q+L +KGCPLVGISDITCDIGGS+EFVN+TTSIDS FF
Sbjct: 298 SVIVNCMYWERRFPRLLSSKQIQELNKKGCPLVGISDITCDIGGSIEFVNQTTSIDSPFF 357
Query: 363 RYDPLSDSYHDDLEGNGLVCQAVDTLPTEFAKEASQHFGDILLEFIGSLSSTVDFTELPS 422
RY+PL+DSYH+D++G+G++C AVD LPTEFAKEAS+HFGDIL +F+GSL+ST DFT+LP+
Sbjct: 358 RYEPLTDSYHNDMDGDGVICSAVDILPTEFAKEASRHFGDILSQFVGSLASTADFTKLPA 417
Query: 423 HLRRACIAHGGALTTLYEYIPRMRKSDSEDVSDNLAKGH-SNKKKHNLLVSLSGHLFDQF 481
HL RAC+ HGG LTTLYEYIPRMRKSD+ D+SDN GH +NKKK+++LVSLSGHLFDQF
Sbjct: 418 HLTRACVVHGGTLTTLYEYIPRMRKSDTLDISDNHTNGHINNKKKYSVLVSLSGHLFDQF 477
Query: 482 LINEALDIIEAAGGSFHLVKCQVGQSTEALSFSELEVGADDSAVLDQIIDSLTSLANASE 541
LINEALDIIEAAGGSFHLVKCQVGQST+A+S+SELEVGADD VLDQIIDSLTS+AN +E
Sbjct: 478 LINEALDIIEAAGGSFHLVKCQVGQSTDAMSYSELEVGADDGKVLDQIIDSLTSIANPTE 537
Query: 542 NNRDQISGINRISLRIGKVQETATQKGPGT--KGTSSVLIIGAGRVCRPAAELLASFGSP 599
N+ +N+ISL++GK+QET +K + K VLI+GAGRVC+PA ELLAS G+
Sbjct: 538 NHGTPSQQLNKISLKVGKLQETGMKKDSESDPKRKMLVLILGAGRVCQPACELLASIGTA 597
Query: 600 -SHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLCKCIS 658
S Q KTC++ D E Q D+ V+VASLYLKDAEE+I+GIPN AV+LDV+DH++L + IS
Sbjct: 598 ASRQWYKTCLQNDSEEQMDVHVIVASLYLKDAEEIIQGIPNTAAVELDVTDHRALHQYIS 657
Query: 659 QVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGEMGLDP 718
QVEIVISLL ASCHV +A C++ KKHLVTASY+DDSM +DEKAK AGITILGEMGLDP
Sbjct: 658 QVEIVISLLLASCHVAIAEVCVKLKKHLVTASYVDDSMLMMDEKAKNAGITILGEMGLDP 717
Query: 719 GIDHMMAMKMINHAHVRKGKIKSFTSYCGGLPSPAAANNPLAYKFSWSPAGAIRAGRNPA 778
GIDHMMAMKMIN AH++KGKI SFTSYCGG+PSPAAANNPLAYKFSW+PAGA +AGRNPA
Sbjct: 718 GIDHMMAMKMINQAHLKKGKIMSFTSYCGGIPSPAAANNPLAYKFSWNPAGAPKAGRNPA 777
Query: 779 IYLFNGKTVQVDGDSLYDSAEKFRIADLPAFALECLPNRNSLVYGDIYGIGKEASTIFRG 838
G+TV V+GD LYDSA +FRI DLPAFALECLPNRNSL YGD+YGIG EASTIFRG
Sbjct: 778 TSKSQGETVHVNGDDLYDSAVRFRIPDLPAFALECLPNRNSLTYGDLYGIGHEASTIFRG 837
Query: 839 TLRYEGFGEIMGTLGRIGFFSAETHPVLKQGSGPTFRMFLCEILKMDSQKMGEAPLGEKE 898
TLRYEGF EIM TL RIG F+AET P+LK PTFR FLCE+LK+D++ M E +GEK+
Sbjct: 838 TLRYEGFSEIMATLARIGIFNAETLPLLKHEGRPTFRNFLCELLKIDTKDMNEVVVGEKK 897
Query: 899 ITERILSLGHCKERETASKAAKTIIFLGLHEQTEIPASCESPFSVTCLLMEEKLAYSSTE 958
I ERIL LGHCKE A KAAKTI+FLGL+EQT IP SC+S F+VTC MEE+L YS+TE
Sbjct: 898 IAERILELGHCKEPGVAVKAAKTIVFLGLNEQTGIPVSCQSAFAVTCHRMEERLTYSNTE 957
Query: 959 EDMVLLHHEVEVEFPDGQPSENNRATLLEFGKMKNGKMISAMALTVGIPAGIAAMLLLVN 1018
+DMVLLHHEVEV+FPD + +E + ATLLEFGK KNGKMISAMALTVG+P I A+LL+VN
Sbjct: 958 QDMVLLHHEVEVDFPDSKQTERHTATLLEFGKAKNGKMISAMALTVGVPVAIGALLLIVN 1017
Query: 1019 KIKTRGVLRPIEPEVYVPALDMLQAYGIKLVEKS 1052
KIKTRGVL PI PEVY+PAL++ QAYGIKL+EK+
Sbjct: 1018 KIKTRGVLGPIVPEVYLPALEIAQAYGIKLMEKT 1051
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359484440|ref|XP_003633109.1| PREDICTED: alpha-aminoadipic semialdehyde synthase-like [Vitis vinifera] gi|297738495|emb|CBI27740.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1677 bits (4343), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 809/1053 (76%), Positives = 910/1053 (86%), Gaps = 5/1053 (0%)
Query: 3 MLGNGVVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPSTKRIHHDVLYE 62
MLGNG+VGILSES NKWERR PLTPSHCARLL SGR K+GVARI+VQPSTKRIHHD LYE
Sbjct: 1 MLGNGIVGILSESSNKWERRVPLTPSHCARLLRSGRGKTGVARIIVQPSTKRIHHDALYE 60
Query: 63 DVGCQISEDLSECGLVLGIKQPKLEMILPDKAYAFFSHTHKAQRENMPLLDKILAERVSL 122
+VGC+ISEDLSECGL+LG+KQPKLEMI P +AYAFFSHTHKAQ+ENMPLLDKIL R SL
Sbjct: 61 EVGCEISEDLSECGLILGVKQPKLEMIFPHRAYAFFSHTHKAQKENMPLLDKILEARASL 120
Query: 123 YDYELIVGDNGRRLLAFGKFAGRAGMIDFLHGLGQRYLSLGYSTPFLSLGASYMYSSLAA 182
YDYELIVGD+G+RLLAFGK+AGRAG+IDFLHGLG RYLSLGYSTPFLSLGASYMYSSLAA
Sbjct: 121 YDYELIVGDHGKRLLAFGKYAGRAGLIDFLHGLGMRYLSLGYSTPFLSLGASYMYSSLAA 180
Query: 183 AKAAVISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFG 242
AKAAVISVGEEI+ GLP GICPLVF+FTGSGNVSLGAQEIFKLLPHTFV+PSRLPELFG
Sbjct: 181 AKAAVISVGEEIAAHGLPPGICPLVFVFTGSGNVSLGAQEIFKLLPHTFVDPSRLPELFG 240
Query: 243 KAKD--QHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAP 300
KAKD Q SKR+FQVYGCV TS+ MV+HKDPTK FDKADYYAHPE+Y+P+FH+KIAP
Sbjct: 241 KAKDPTQSARTSKRVFQVYGCVTTSQHMVQHKDPTKEFDKADYYAHPENYSPIFHEKIAP 300
Query: 301 YASVIVNCMYWEQRFPRLLSTQQLQDLVRKGCPLVGISDITCDIGGSLEFVNRTTSIDSS 360
YASVIVNCMYWE+RFP LL+ QQLQDL+RKGCPL+GISDITCDIGGSLEFVN+TTSIDS
Sbjct: 301 YASVIVNCMYWEKRFPPLLTAQQLQDLMRKGCPLLGISDITCDIGGSLEFVNQTTSIDSP 360
Query: 361 FFRYDPLSDSYHDDLEGNGLVCQAVDTLPTEFAKEASQHFGDILLEFIGSLSSTVDFTEL 420
FFRYDP +DSYH D+EG G++C +VD LPTEFAKEAS+HFGDIL EFIGSL+ST D TEL
Sbjct: 361 FFRYDPFNDSYHHDMEGKGVICASVDILPTEFAKEASKHFGDILSEFIGSLASTTDITEL 420
Query: 421 PSHLRRACIAHGGALTTLYEYIPRMRKSDSEDVSDNLAKGHSNKKKHNLLVSLSGHLFDQ 480
P+HLRRACIAHGGA+TTL+EYIPRMR SDSE + + LA HSNKK +N+LVSLSGHLFDQ
Sbjct: 421 PAHLRRACIAHGGAVTTLFEYIPRMRNSDSEKLPETLANCHSNKK-YNILVSLSGHLFDQ 479
Query: 481 FLINEALDIIEAAGGSFHLVKCQVGQSTEALSFSELEVGADDSAVLDQIIDSLTSLANAS 540
FLINEALDIIEAAGGSFHLVKCQVGQS A+S+SELEVGADD+AVL QIIDSL SLAN S
Sbjct: 480 FLINEALDIIEAAGGSFHLVKCQVGQSANAMSYSELEVGADDNAVLHQIIDSLMSLANPS 539
Query: 541 ENNRDQISGINRISLRIGKVQETATQKGPGTKGTSSVLIIGAGRVCRPAAELLASFGS-P 599
EN+ N+ISL++GKV E K VLI+GAGRVC+P AE+L + GS
Sbjct: 540 ENDGFLSKETNKISLKVGKVLERGNMMELDDKEKPGVLILGAGRVCQPVAEVLTTAGSVS 599
Query: 600 SHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLCKCISQ 659
S Q+ K C E+DFE Q+DI+V+VASLYLKDAEE+IEG+PNA A+QLDV DH++L K ISQ
Sbjct: 600 SRQLFKMCQESDFEGQSDIQVIVASLYLKDAEEIIEGLPNATAIQLDVMDHENLHKYISQ 659
Query: 660 VEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGEMGLDPG 719
VE+VISLLPASCH +VANACIE KKHLVTASYIDDSMSKLDE+AKGAGITILGEMGLDPG
Sbjct: 660 VEVVISLLPASCHFIVANACIELKKHLVTASYIDDSMSKLDERAKGAGITILGEMGLDPG 719
Query: 720 IDHMMAMKMINHAHVRKGKIKSFTSYCGGLPSPAAANNPLAYKFSWSPAGAIRAGRNPAI 779
IDHMMAM MI+ AHV+ GKI+SF SYCGGLPSP AANNPLAYKFSW+PAGAIR+GRNPA
Sbjct: 720 IDHMMAMMMIDQAHVQGGKIRSFISYCGGLPSPEAANNPLAYKFSWNPAGAIRSGRNPAT 779
Query: 780 YLFNGKTVQVDGDSLYDSAEKFRIADLPAFALECLPNRNSLVYGDIYGIGKEASTIFRGT 839
Y +G+TV ++G+SLYDSA FRI DLPAFALE LPNRNSLVYGD+YGI EASTIFRGT
Sbjct: 780 YRSHGETVSINGESLYDSAVSFRIPDLPAFALEILPNRNSLVYGDLYGIDHEASTIFRGT 839
Query: 840 LRYEGFGEIMGTLGRIGFFSAETHPVLKQGSGPTFRMFLCEILKMDSQKMGEAPLGEKEI 899
LRYEGF EIMGTL RIGFF E HP+L PTF FL E+LK+ S+ + + ++I
Sbjct: 840 LRYEGFAEIMGTLARIGFFDTEAHPILTLTKRPTFGAFLLELLKIKSEDF-DGTMTAEDI 898
Query: 900 TERILSLGHCKERETASKAAKTIIFLGLHEQTEIPASCESPFSVTCLLMEEKLAYSSTEE 959
ERIL+LG CK + TA K AKTI++LG HEQTEIP SC S F V CL MEE+LAYSS E+
Sbjct: 899 KERILALGLCKVQVTALKTAKTILYLGFHEQTEIPVSCRSAFDVACLRMEERLAYSSEEQ 958
Query: 960 DMVLLHHEVEVEFPDGQPSENNRATLLEFGKMKNGKMISAMALTVGIPAGIAAMLLLVNK 1019
DMVLLHHEVEVEFPDG+P E +RATLLEFGK KNGK +AMA TVGIPA I A+L+L K
Sbjct: 959 DMVLLHHEVEVEFPDGRPVEKHRATLLEFGKTKNGKTTTAMAFTVGIPAAIGALLILEKK 1018
Query: 1020 IKTRGVLRPIEPEVYVPALDMLQAYGIKLVEKS 1052
IKTRGVLRPIEP+VYVPALD+LQAYG+KL+EK+
Sbjct: 1019 IKTRGVLRPIEPQVYVPALDILQAYGLKLLEKT 1051
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357479287|ref|XP_003609929.1| Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Medicago truncatula] gi|355510984|gb|AES92126.1| Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1634 bits (4232), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 773/1052 (73%), Positives = 898/1052 (85%), Gaps = 5/1052 (0%)
Query: 1 MPMLGNGVVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPSTKRIHHDVL 60
M M GNGVVGILSESVNKWERR PLTPSHCARLLH G +GV++I+VQPSTKRIHHD L
Sbjct: 1 MKMFGNGVVGILSESVNKWERRTPLTPSHCARLLHHG---TGVSKIIVQPSTKRIHHDAL 57
Query: 61 YEDVGCQISEDLSECGLVLGIKQPKLEMILPDKAYAFFSHTHKAQRENMPLLDKILAERV 120
YE+VGC+IS+DLS CGL+LGIKQP LEMILP++AYAFFSHTHKAQ+ENMPLLDKILAER
Sbjct: 58 YEEVGCEISQDLSPCGLILGIKQPDLEMILPNRAYAFFSHTHKAQKENMPLLDKILAERA 117
Query: 121 SLYDYELIVGDNGRRLLAFGKFAGRAGMIDFLHGLGQRYLSLGYSTPFLSLGASYMYSSL 180
SLYDYELIVG+NG+RLLAFG FAGRAGMIDFL GLGQRYLSLGYSTPFLSLG+SYMY SL
Sbjct: 118 SLYDYELIVGENGKRLLAFGNFAGRAGMIDFLRGLGQRYLSLGYSTPFLSLGSSYMYPSL 177
Query: 181 AAAKAAVISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPEL 240
AAAKAAVISVGEEIST GLP GICPLVF+FTGSGNV GAQEIFKLLPHTFV+PS+L EL
Sbjct: 178 AAAKAAVISVGEEISTQGLPLGICPLVFVFTGSGNVCCGAQEIFKLLPHTFVDPSKLSEL 237
Query: 241 FGKAKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAP 300
+Q SKRIFQVYGC+VT++DMVE KDP K FDK DYYAHPEHYNP+FH+KIAP
Sbjct: 238 HKTETNQARHGSKRIFQVYGCIVTAQDMVEPKDPMKVFDKVDYYAHPEHYNPIFHEKIAP 297
Query: 301 YASVIVNCMYWEQRFPRLLSTQQLQDLVRKGCPLVGISDITCDIGGSLEFVNRTTSIDSS 360
Y SVIVNCMYWE+RFP LLS +Q+QDL+R GCPLVGI+DITCDIGGSLEFV+RTTSIDS
Sbjct: 298 YTSVIVNCMYWEKRFPPLLSYKQIQDLMRNGCPLVGIADITCDIGGSLEFVDRTTSIDSP 357
Query: 361 FFRYDPLSDSYHDDLEGNGLVCQAVDTLPTEFAKEASQHFGDILLEFIGSLSSTVDFTEL 420
FFRYD ++DSYH D+EGNGL+C AVD LPTEFAKEASQ+FG++L +F+ +L+S D T L
Sbjct: 358 FFRYDAITDSYHQDMEGNGLICLAVDILPTEFAKEASQYFGNVLSQFVTNLASATDITNL 417
Query: 421 PSHLRRACIAHGGALTTLYEYIPRMRKSDSEDVSDNLAKGHSNKKKHNLLVSLSGHLFDQ 480
P+HLRRACI HGG LT+LY+YIPRMRKSDSEDVS+N A SNK K+N VSLSGHLFDQ
Sbjct: 418 PAHLRRACIVHGGVLTSLYDYIPRMRKSDSEDVSENSANSLSNKSKYNTSVSLSGHLFDQ 477
Query: 481 FLINEALDIIEAAGGSFHLVKCQVGQSTEALSFSELEVGADDSAVLDQIIDSLTSLANAS 540
FLINEALDIIEAAGGSFHLV C VGQS +A+S+SELEVGADD AVLDQIIDSLTSLAN +
Sbjct: 478 FLINEALDIIEAAGGSFHLVNCHVGQSFDAISYSELEVGADDKAVLDQIIDSLTSLANPT 537
Query: 541 ENNRDQISGINRISLRIGKVQETATQKGPGTKGTSSVLIIGAGRVCRPAAELLASFGSPS 600
ENNR ++ISL +GKVQE +K K ++VLI+GAGRVC+PAA++L+SFG S
Sbjct: 538 ENNRFSNQNSSKISLTLGKVQENGMEKESDPKKKAAVLILGAGRVCQPAAQMLSSFG--S 595
Query: 601 HQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLCKCISQV 660
Q KT +E DFE Q D+ V++ SLYLKDAE+++EGIPN +QLDV D SL K ISQV
Sbjct: 596 SQWYKTLLEDDFEDQIDVDVILGSLYLKDAEQIVEGIPNVTGIQLDVMDSASLFKSISQV 655
Query: 661 EIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGEMGLDPGI 720
++VISLLP SCH++VANACIE +KHLVTASY+D SMS LD+KAK AGITILGEMGLDPGI
Sbjct: 656 DVVISLLPPSCHIIVANACIELRKHLVTASYVDSSMSMLDDKAKDAGITILGEMGLDPGI 715
Query: 721 DHMMAMKMINHAHVRKGKIKSFTSYCGGLPSPAAANNPLAYKFSWSPAGAIRAGRNPAIY 780
DHMMAMKMI+ AH++KGKIKSFTSYCGGLPSP ANNPLAYKFSW+P GAIRAGRNPA Y
Sbjct: 716 DHMMAMKMIDEAHMQKGKIKSFTSYCGGLPSPEDANNPLAYKFSWNPVGAIRAGRNPATY 775
Query: 781 LFNGKTVQVDGDSLYDSAEKFRIADLPAFALECLPNRNSLVYGDIYGIGKEASTIFRGTL 840
++G+TV +DG++LYDSA + RI D PAFALECLPNRNSL+YGD+YGIG EA+TIFRGTL
Sbjct: 776 KYHGETVHIDGNNLYDSATRLRIPDFPAFALECLPNRNSLIYGDLYGIGSEATTIFRGTL 835
Query: 841 RYEGFGEIMGTLGRIGFFSAETHPVLKQGSGPTFRMFLCEILKMDSQKMGEAPLGEKEIT 900
RYEGF EIM TL RIG F+ E H +LK PTFR F+ ++LK+ + A + E++IT
Sbjct: 836 RYEGFSEIMATLSRIGLFNNEAHTILKNEERPTFRKFMFDLLKIVRKDTDGALMREEDIT 895
Query: 901 ERILSLGHCKERETASKAAKTIIFLGLHEQTEIPASCESPFSVTCLLMEEKLAYSSTEED 960
E+IL+LGHCK++ +A AKTIIFLGL +QTEIPASC+S F V C MEE+L+YSSTE+D
Sbjct: 896 EKILTLGHCKDQRSAMMTAKTIIFLGLLDQTEIPASCQSAFDVACFRMEERLSYSSTEKD 955
Query: 961 MVLLHHEVEVEFPDGQPSENNRATLLEFGKMKNGKMISAMALTVGIPAGIAAMLLLVNKI 1020
MVLLHHEVE+E+PD + +E +RATLLEFGK+ +GK +AMALTVGIPA + A+LLL NKI
Sbjct: 956 MVLLHHEVEIEYPDSKITEKHRATLLEFGKIIDGKTTTAMALTVGIPAAVGALLLLTNKI 1015
Query: 1021 KTRGVLRPIEPEVYVPALDMLQAYGIKLVEKS 1052
+TRGVLRPI+PEVY PALD++QAYGIKL+EK+
Sbjct: 1016 QTRGVLRPIQPEVYTPALDIIQAYGIKLIEKN 1047
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356565590|ref|XP_003551022.1| PREDICTED: alpha-aminoadipic semialdehyde synthase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1629 bits (4218), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 778/1051 (74%), Positives = 901/1051 (85%), Gaps = 5/1051 (0%)
Query: 3 MLGNGVVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPSTKRIHHDVLYE 62
MLGNGVVGIL+ESVNKWERRAPLTPSHCARLLH G +GV+RI+VQPSTKRIHHD LYE
Sbjct: 1 MLGNGVVGILAESVNKWERRAPLTPSHCARLLHGG---TGVSRIIVQPSTKRIHHDALYE 57
Query: 63 DVGCQISEDLSECGLVLGIKQPKLEMILPDKAYAFFSHTHKAQRENMPLLDKILAERVSL 122
+VG +IS+DLS+CGL+LGIKQPKLEMILPD+AYAFFSHTHKAQ+ENMPLLDKILAER SL
Sbjct: 58 EVGAEISQDLSQCGLILGIKQPKLEMILPDRAYAFFSHTHKAQKENMPLLDKILAERASL 117
Query: 123 YDYELIVGDNGRRLLAFGKFAGRAGMIDFLHGLGQRYLSLGYSTPFLSLGASYMYSSLAA 182
YDYELIVGD G+RLLAFGKFAGRAGMIDFL GLGQR+LSLGYSTPFLSLG+SYMY SLAA
Sbjct: 118 YDYELIVGDTGKRLLAFGKFAGRAGMIDFLRGLGQRFLSLGYSTPFLSLGSSYMYPSLAA 177
Query: 183 AKAAVISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFG 242
AKAAVISVGEEI+T GLP GICPLV +FTGSGNV GAQEIFKLLPHTFV+PS+L +L
Sbjct: 178 AKAAVISVGEEIATQGLPLGICPLVCLFTGSGNVCSGAQEIFKLLPHTFVDPSKLRDLHR 237
Query: 243 KAKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAPYA 302
DQ ASKR+FQVYGCVVT++DMVE KDP K FDKADYYAHPEHYNP FH+KIAPYA
Sbjct: 238 TDPDQPRHASKRVFQVYGCVVTAQDMVEPKDPVKVFDKADYYAHPEHYNPTFHEKIAPYA 297
Query: 303 SVIVNCMYWEQRFPRLLSTQQLQDLVRKGCPLVGISDITCDIGGSLEFVNRTTSIDSSFF 362
SVIVNCMYWE+RFP+LLS +Q+QDL+ +G PLVGI+DITCDIGGS+EFVNR+TSIDS FF
Sbjct: 298 SVIVNCMYWEKRFPQLLSYKQMQDLMGRGSPLVGIADITCDIGGSIEFVNRSTSIDSPFF 357
Query: 363 RYDPLSDSYHDDLEGNGLVCQAVDTLPTEFAKEASQHFGDILLEFIGSLSSTVDFTELPS 422
RYDPL++SYHDD+EGNG++C AVD LPTEFAKEASQHFG+IL +F+ +L+S D T+LP+
Sbjct: 358 RYDPLTNSYHDDMEGNGVICLAVDILPTEFAKEASQHFGNILSQFVVNLASATDITKLPA 417
Query: 423 HLRRACIAHGGALTTLYEYIPRMRKSDSEDVSDNLAKGHSNKKKHNLLVSLSGHLFDQFL 482
HLRRACIAH G LT+LY+YIPRMR SDSE+VS+N SNK+K+N+ VSLSGHLFDQFL
Sbjct: 418 HLRRACIAHKGVLTSLYDYIPRMRSSDSEEVSENSENSLSNKRKYNISVSLSGHLFDQFL 477
Query: 483 INEALDIIEAAGGSFHLVKCQVGQSTEALSFSELEVGADDSAVLDQIIDSLTSLANASEN 542
INEALDIIEAAGGSFHLV C VGQS EA+SFSELEVGAD+ AVLDQIIDSLT++AN +E+
Sbjct: 478 INEALDIIEAAGGSFHLVNCHVGQSIEAVSFSELEVGADNRAVLDQIIDSLTAIANPTEH 537
Query: 543 NRDQISGINRISLRIGKVQETATQKGPGTKGTSSVLIIGAGRVCRPAAELLASFGSP-SH 601
+R ++ISL++GKV+E +K + ++VLI+GAGRVC+PAAE+L+SFG P S
Sbjct: 538 DRFSNQDSSKISLKLGKVEENGIEKESDPRKKAAVLILGAGRVCQPAAEMLSSFGRPSSS 597
Query: 602 QMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLCKCISQVE 661
Q KT +E DFE Q D+ V+V SLYLKDAE+ +EGIPN +QLDV D +LCK ISQV+
Sbjct: 598 QWYKTLLEDDFECQTDVEVIVGSLYLKDAEQTVEGIPNVTGIQLDVMDRANLCKYISQVD 657
Query: 662 IVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGEMGLDPGID 721
+VISLLP SCH++VANACIE KKHLVTASY+D SMS L++KAK AGITILGEMGLDPGID
Sbjct: 658 VVISLLPPSCHIIVANACIELKKHLVTASYVDSSMSMLNDKAKDAGITILGEMGLDPGID 717
Query: 722 HMMAMKMINHAHVRKGKIKSFTSYCGGLPSPAAANNPLAYKFSWSPAGAIRAGRNPAIYL 781
HMMAMKMIN AHVRKGKIKSFTSYCGGLPSP AANNPLAYKFSW+PAGAIRAGRNPA Y
Sbjct: 718 HMMAMKMINQAHVRKGKIKSFTSYCGGLPSPEAANNPLAYKFSWNPAGAIRAGRNPATYK 777
Query: 782 FNGKTVQVDGDSLYDSAEKFRIADLPAFALECLPNRNSLVYGDIYGIGKEASTIFRGTLR 841
+ G+TV +DGD LYDSA + R+ DLPAFALECLPNRNSL+YGD+YGI EASTIFRGTLR
Sbjct: 778 WGGETVHIDGDDLYDSATRLRLPDLPAFALECLPNRNSLLYGDLYGI-TEASTIFRGTLR 836
Query: 842 YEGFGEIMGTLGRIGFFSAETHPVLKQGSGPTFRMFLCEILKMDSQKMGEAPLGEKEITE 901
YEGF EIMGTL RI F+ E H +L G PTFR FL E+LK+ E +GE +I E
Sbjct: 837 YEGFSEIMGTLSRISLFNNEAHSLLMNGQRPTFRKFLFELLKVVGDNPDELLIGENDIME 896
Query: 902 RILSLGHCKERETASKAAKTIIFLGLHEQTEIPASCESPFSVTCLLMEEKLAYSSTEEDM 961
+IL GHCK++ TA + AKTIIFLGL +QTEIPASC+S F V C MEE+L+Y+STE+DM
Sbjct: 897 QILIQGHCKDQRTAMETAKTIIFLGLLDQTEIPASCKSAFDVACFRMEERLSYTSTEKDM 956
Query: 962 VLLHHEVEVEFPDGQPSENNRATLLEFGKMKNGKMISAMALTVGIPAGIAAMLLLVNKIK 1021
VLLHHEVE+E+PD Q +E +RATLLEFGK + K +AMALTVGIPA + A+LLL NKI+
Sbjct: 957 VLLHHEVEIEYPDSQITEKHRATLLEFGKTLDEKTTTAMALTVGIPAAVGALLLLTNKIQ 1016
Query: 1022 TRGVLRPIEPEVYVPALDMLQAYGIKLVEKS 1052
TRGVLRPIEPEVY PALD+++AYGIKL+EK+
Sbjct: 1017 TRGVLRPIEPEVYNPALDIIEAYGIKLIEKT 1047
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356547992|ref|XP_003542388.1| PREDICTED: alpha-aminoadipic semialdehyde synthase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1627 bits (4212), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 777/1051 (73%), Positives = 898/1051 (85%), Gaps = 5/1051 (0%)
Query: 3 MLGNGVVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPSTKRIHHDVLYE 62
MLGNGVVGIL+ESVNKWERRAPLTPSHCARLLH G +GV+RI+VQPSTKRIHHD LYE
Sbjct: 1 MLGNGVVGILAESVNKWERRAPLTPSHCARLLHGG---TGVSRIIVQPSTKRIHHDALYE 57
Query: 63 DVGCQISEDLSECGLVLGIKQPKLEMILPDKAYAFFSHTHKAQRENMPLLDKILAERVSL 122
+VG +IS+DLS+CGL+LGIKQPKLEMILPD+AYAFFSHTHKAQ+ENMPLLDKILAER SL
Sbjct: 58 EVGAEISQDLSQCGLILGIKQPKLEMILPDRAYAFFSHTHKAQKENMPLLDKILAERASL 117
Query: 123 YDYELIVGDNGRRLLAFGKFAGRAGMIDFLHGLGQRYLSLGYSTPFLSLGASYMYSSLAA 182
YDYELIVGDNG+RLLAFGKFAGRAGMIDFL GLGQR+LSLGYSTPFLSLG+SYMY SLAA
Sbjct: 118 YDYELIVGDNGKRLLAFGKFAGRAGMIDFLRGLGQRFLSLGYSTPFLSLGSSYMYPSLAA 177
Query: 183 AKAAVISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFG 242
AKAAVISVGEEI+T GLP GICPLVF+FTGSGNV GAQEIFKLLPHTFV+PS+L +L
Sbjct: 178 AKAAVISVGEEIATQGLPLGICPLVFVFTGSGNVCSGAQEIFKLLPHTFVDPSKLRDLHR 237
Query: 243 KAKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAPYA 302
KDQ ASKR+FQVYGCVVT++DMVE KD FDKADYY+HPEHYNP FH+KIAPYA
Sbjct: 238 TDKDQPRHASKRVFQVYGCVVTAQDMVEPKDHVIVFDKADYYSHPEHYNPTFHEKIAPYA 297
Query: 303 SVIVNCMYWEQRFPRLLSTQQLQDLVRKGCPLVGISDITCDIGGSLEFVNRTTSIDSSFF 362
SVIVNCMYWE+RFP+LLS +Q+QDL+ +GCPLVGI+DITCDIGGS+EFVNR TSIDS FF
Sbjct: 298 SVIVNCMYWEKRFPQLLSYKQMQDLMSQGCPLVGIADITCDIGGSIEFVNRATSIDSPFF 357
Query: 363 RYDPLSDSYHDDLEGNGLVCQAVDTLPTEFAKEASQHFGDILLEFIGSLSSTVDFTELPS 422
RYDPL++SYHDD+EGNG++C AVD LPTEFAKEASQHFG+IL +F+ +L+S D T+LP+
Sbjct: 358 RYDPLTNSYHDDMEGNGVICLAVDILPTEFAKEASQHFGNILSQFVINLASATDITKLPA 417
Query: 423 HLRRACIAHGGALTTLYEYIPRMRKSDSEDVSDNLAKGHSNKKKHNLLVSLSGHLFDQFL 482
HLRRACIA+ G LT+LY+YIPRMR SDSE+VS+N SNK+K+N+ VSLSGHLFDQFL
Sbjct: 418 HLRRACIANKGVLTSLYDYIPRMRSSDSEEVSENAENSLSNKRKYNISVSLSGHLFDQFL 477
Query: 483 INEALDIIEAAGGSFHLVKCQVGQSTEALSFSELEVGADDSAVLDQIIDSLTSLANASEN 542
INEALDIIEAAGGSFHLV C VGQS EA+SFSELEVGADD AVLDQIIDSLT++AN +EN
Sbjct: 478 INEALDIIEAAGGSFHLVNCHVGQSVEAVSFSELEVGADDRAVLDQIIDSLTAIANPTEN 537
Query: 543 NRDQISGINRISLRIGKVQETATQKGPGTKGTSSVLIIGAGRVCRPAAELLASFGSP-SH 601
+R ++ISL++GKV+E +K + ++VLI+GAGRVC+PAAE+L+SFG P S
Sbjct: 538 DRFSNQDSSKISLKLGKVEENGIEKESDPRKKAAVLILGAGRVCQPAAEMLSSFGRPSSS 597
Query: 602 QMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLCKCISQVE 661
Q KT +E DFE Q DI ++V SLYLKDAE+ +EGIPN VQLDV DH +LCK I+QV
Sbjct: 598 QWYKTLLEDDFECQIDIEIIVGSLYLKDAEQTVEGIPNVTGVQLDVMDHANLCKYIAQVN 657
Query: 662 IVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGEMGLDPGID 721
+VISLLP SCH++VANACIE KKHLVTASY+D SMS L++KAK AGITILGEMGLDPGID
Sbjct: 658 VVISLLPPSCHIIVANACIELKKHLVTASYVDSSMSMLNDKAKDAGITILGEMGLDPGID 717
Query: 722 HMMAMKMINHAHVRKGKIKSFTSYCGGLPSPAAANNPLAYKFSWSPAGAIRAGRNPAIYL 781
HMMAMKMIN AHVRKGKIKSFTSYCGGLPSP AANNPLAYKFSW+PAGAIRAGRNPA Y
Sbjct: 718 HMMAMKMINQAHVRKGKIKSFTSYCGGLPSPEAANNPLAYKFSWNPAGAIRAGRNPATYK 777
Query: 782 FNGKTVQVDGDSLYDSAEKFRIADLPAFALECLPNRNSLVYGDIYGIGKEASTIFRGTLR 841
+ G+TV +DG+ LYDSA + R+ DLPAFALECLPNRNSL+ D+YGI EASTIFRGTLR
Sbjct: 778 WGGETVHIDGNDLYDSATRLRLPDLPAFALECLPNRNSLLLRDLYGI-TEASTIFRGTLR 836
Query: 842 YEGFGEIMGTLGRIGFFSAETHPVLKQGSGPTFRMFLCEILKMDSQKMGEAPLGEKEITE 901
YEGF EIMGTL RIG F+ E H +L TFR FL E+LK+ S +GE +I E
Sbjct: 837 YEGFSEIMGTLSRIGLFNNEAHSLLMNEQRQTFRKFLFELLKVVSDNPDGPLIGENDIME 896
Query: 902 RILSLGHCKERETASKAAKTIIFLGLHEQTEIPASCESPFSVTCLLMEEKLAYSSTEEDM 961
IL+ GHCK++ TA K AKTIIFLGL +TEIPASC+S F V C MEE+L+Y+STE+DM
Sbjct: 897 HILTQGHCKDQRTAMKTAKTIIFLGLLGETEIPASCKSAFDVVCFRMEERLSYTSTEKDM 956
Query: 962 VLLHHEVEVEFPDGQPSENNRATLLEFGKMKNGKMISAMALTVGIPAGIAAMLLLVNKIK 1021
VLLHHE+E+E+PD Q +E +RATLLEFGK NGK +AMALTVGIPA + A+LLL NKI+
Sbjct: 957 VLLHHELEIEYPDSQITEKHRATLLEFGKTLNGKTTTAMALTVGIPAAVGALLLLTNKIQ 1016
Query: 1022 TRGVLRPIEPEVYVPALDMLQAYGIKLVEKS 1052
TRGVLRPIEPEVY PALD+++AYGIKL+E +
Sbjct: 1017 TRGVLRPIEPEVYTPALDIIEAYGIKLIETT 1047
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449452622|ref|XP_004144058.1| PREDICTED: alpha-aminoadipic semialdehyde synthase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1563 bits (4047), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 748/1051 (71%), Positives = 872/1051 (82%), Gaps = 6/1051 (0%)
Query: 3 MLGNGVVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPSTKRIHHDVLYE 62
MLGNGVVGILSES NKWERR PL P HCARLLH G+ K+G++RI++QPSTKRI+HD YE
Sbjct: 1 MLGNGVVGILSESCNKWERRVPLAPEHCARLLHGGKQKTGISRIIIQPSTKRIYHDAQYE 60
Query: 63 DVGCQISEDLSECGLVLGIKQPKLEMILPDKAYAFFSHTHKAQRENMPLLDKILAERVSL 122
DVGC+ISEDLSECGL+LG+KQPKLEMILPD+AY FFSHTHKAQ+ENMPLLDKIL E+ SL
Sbjct: 61 DVGCEISEDLSECGLILGVKQPKLEMILPDRAYGFFSHTHKAQKENMPLLDKILTEKASL 120
Query: 123 YDYELIVGDNGRRLLAFGKFAGRAGMIDFLHGLGQRYLSLGYSTPFLSLGASYMYSSLAA 182
YDYELIVGD+G+RLLAFGKFAGRAG ID LHGLGQRYLSLG STPFLSLG SYMY+SLAA
Sbjct: 121 YDYELIVGDHGKRLLAFGKFAGRAGFIDILHGLGQRYLSLGISTPFLSLGMSYMYTSLAA 180
Query: 183 AKAAVISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFG 242
AKAAVISVGEEI+T GLP ICPLV +FTGSGNVS GAQEIFKLLPHTFV+PS+LPE+ G
Sbjct: 181 AKAAVISVGEEIATQGLPPEICPLVIVFTGSGNVSHGAQEIFKLLPHTFVDPSKLPEICG 240
Query: 243 KAKD--QHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAP 300
K + QHG KR+FQV+GCVV+ + MVEHKD TK +D+ DYYAHP+ Y P+FH+KIAP
Sbjct: 241 KNVELCQHGATKKRVFQVFGCVVSCQHMVEHKDSTKKYDRVDYYAHPDQYRPIFHEKIAP 300
Query: 301 YASVIVNCMYWEQRFPRLLSTQQLQDLVRKGCPLVGISDITCDIGGSLEFVNRTTSIDSS 360
YASVIVNCMYWE RFPRLL+T Q QDL+R GCPLVGISDITCD+GGS+EF+N+TTSIDS
Sbjct: 301 YASVIVNCMYWEGRFPRLLTTVQFQDLMRSGCPLVGISDITCDVGGSIEFINQTTSIDSP 360
Query: 361 FFRYDPLSDSYHDDLEGNGLVCQAVDTLPTEFAKEASQHFGDILLEFIGSLSSTVDFTEL 420
FFRYD +SD YH DLEGNG++C AVD LPTEFAKEASQHFGDIL F+GSL+S VD EL
Sbjct: 361 FFRYDHISDLYHHDLEGNGVICSAVDILPTEFAKEASQHFGDILSTFVGSLASVVDILEL 420
Query: 421 PSHLRRACIAHGGALTTLYEYIPRMRKSDSEDVSDNLAKGHSNKKKHNLLVSLSGHLFDQ 480
P HLRRACIAH GALT+L+EYIPRMRKS+SE+ S ++A GHSNK N+ VSLSGHLFDQ
Sbjct: 421 PMHLRRACIAHRGALTSLFEYIPRMRKSESEESSVDIANGHSNKM-FNIQVSLSGHLFDQ 479
Query: 481 FLINEALDIIEAAGGSFHLVKCQVGQSTEALSFSELEVGADDSAVLDQIIDSLTSLANAS 540
FLINEALDIIE+AGGSFHLV CQVGQ+ A+S S+LE+GADD +LD II SL+ +AN
Sbjct: 480 FLINEALDIIESAGGSFHLVHCQVGQNANAMSHSDLEIGADDVVILDNIIQSLSRMANPQ 539
Query: 541 ENNRDQISGINRISLRIGKVQETATQKGPGTKGTSSVLIIGAGRVCRPAAELLASFGSPS 600
EN + N+I L++GK+QE+ K K ++VL++GAGRVC PA +LLAS G+
Sbjct: 540 ENLDLVNNETNKIFLKVGKIQESGF-KSEDVKRKTAVLLLGAGRVCYPAVDLLASSGNSC 598
Query: 601 HQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLCKCISQV 660
Q +T +E E NDI V+VASLYLKDA+E+ EGI NA AVQLD+SD + L ISQV
Sbjct: 599 CQFWRTFLEQYAEDWNDIEVIVASLYLKDAKEITEGIANATAVQLDISDSEKLFMYISQV 658
Query: 661 EIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGEMGLDPGI 720
E+VISLLP SCH+ VANACIE +KHLVTASYI+D+M+ LDEKA+ AGITILGEMGLDPGI
Sbjct: 659 EVVISLLPPSCHLTVANACIELRKHLVTASYINDTMTLLDEKARNAGITILGEMGLDPGI 718
Query: 721 DHMMAMKMINHAHVRKGKIKSFTSYCGGLPSPAAANNPLAYKFSWSPAGAIRAGRNPAIY 780
DHM+AMKMIN +H++ +KSF SYCGG+PSP +ANNPLAYKFSW+PAGAIRAG NPA Y
Sbjct: 719 DHMLAMKMINESHLQNRIVKSFISYCGGIPSPESANNPLAYKFSWNPAGAIRAGSNPATY 778
Query: 781 LFNGKTVQVDGDSLYDSAEKFRIADLPAFALECLPNRNSLVYGDIYGIGKEASTIFRGTL 840
+ GKTV+V+G LYDSA + R+ DLPAFALEC+PNRNSL+YGD+YGIG+EASTIFRGTL
Sbjct: 779 RYEGKTVKVEGKDLYDSAVRLRLPDLPAFALECIPNRNSLIYGDVYGIGQEASTIFRGTL 838
Query: 841 RYEGFGEIMGTLGRIGFFSAETHPVLKQGSGPTFRMFLCEILKMDSQKMGEAPLGEKEIT 900
RYEGF ++MGTL RIGF E H L+ G P FR FL E+LK+ G + +GEK I+
Sbjct: 839 RYEGFSKVMGTLARIGFLDTEVHSFLRNGR-PLFRDFLLELLKIKGVSSG-STIGEKAIS 896
Query: 901 ERILSLGHCKERETASKAAKTIIFLGLHEQTEIPASCESPFSVTCLLMEEKLAYSSTEED 960
E I+S G CKE+ETA + AKTIIFLG HE TEIP+SC+S F VTC MEE+LAYS E+D
Sbjct: 897 ESIISSGLCKEQETAVRVAKTIIFLGFHEPTEIPSSCQSAFDVTCYRMEERLAYSKNEQD 956
Query: 961 MVLLHHEVEVEFPDGQPSENNRATLLEFGKMKNGKMISAMALTVGIPAGIAAMLLLVNKI 1020
MVLLHHE++V PDGQ +E+ +ATLL+FG KNGK SAMALTVGIPA I A+LLL NKI
Sbjct: 957 MVLLHHEIQVATPDGQHTESRKATLLDFGTTKNGKSTSAMALTVGIPAAIGALLLLTNKI 1016
Query: 1021 KTRGVLRPIEPEVYVPALDMLQAYGIKLVEK 1051
KTRGVLRPIE EVY+PALD+LQAYG KL EK
Sbjct: 1017 KTRGVLRPIESEVYIPALDLLQAYGFKLTEK 1047
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|2052508|gb|AAB96826.1| lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1562 bits (4044), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 748/1054 (70%), Positives = 891/1054 (84%), Gaps = 7/1054 (0%)
Query: 4 LGNGVVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPSTKRIHHDVLYED 63
LGNGVVGIL+E+VNKWERR PLTPSHCARLLH G+D++G++RIVVQPS KRIHHD LYED
Sbjct: 12 LGNGVVGILAETVNKWERRTPLTPSHCARLLHGGKDRTGISRIVVQPSAKRIHHDALYED 71
Query: 64 VGCQISEDLSECGLVLGIKQPKLEMILPDKAYAFFSHTHKAQRENMPLLDKILAERVSLY 123
VGC+IS+DLS+CGL+LGIKQP+LEMILP++AYAFFSHTHKAQ+ENMPLLDKIL+ERV+L
Sbjct: 72 VGCEISDDLSDCGLILGIKQPELEMILPERAYAFFSHTHKAQKENMPLLDKILSERVTLC 131
Query: 124 DYELIVGDNGRRLLAFGKFAGRAGMIDFLHGLGQRYLSLGYSTPFLSLGASYMYSSLAAA 183
DYELIVGD+G+RLLAFGK+AGRAG++DFLHGLGQRYLSLGYSTPFLSLGASYMYSSLAAA
Sbjct: 132 DYELIVGDHGKRLLAFGKYAGRAGLVDFLHGLGQRYLSLGYSTPFLSLGASYMYSSLAAA 191
Query: 184 KAAVISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFGK 243
KAAVISVGEEI++ GLP GICPLVF+FTG+GNVSLGAQEIFKLLPHTFVEPS+LPELF K
Sbjct: 192 KAAVISVGEEIASQGLPLGICPLVFVFTGTGNVSLGAQEIFKLLPHTFVEPSKLPELFVK 251
Query: 244 AK--DQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAPY 301
K Q+G ++KR++QVYGC++TS+DMVEHKDP+K FDKADYYAHPEHYNPVFH+KI+PY
Sbjct: 252 DKGISQNGISTKRVYQVYGCIITSQDMVEHKDPSKSFDKADYYAHPEHYNPVFHEKISPY 311
Query: 302 ASVIVNCMYWEQRFPRLLSTQQLQDLVRKGCPLVGISDITCDIGGSLEFVNRTTSIDSSF 361
SV+VNCMYWE+RFP LLST+QLQDL +KG PLVGI DITCDIGGS+EFVNR T IDS F
Sbjct: 312 TSVLVNCMYWEKRFPCLLSTKQLQDLTKKGLPLVGICDITCDIGGSIEFVNRATLIDSPF 371
Query: 362 FRYDPLSDSYHDDLEGNGLVCQAVDTLPTEFAKEASQHFGDILLEFIGSLSSTVDFTELP 421
FR++P ++SY+DD++G+G++C AVD LPTEFAKEASQHFGDIL F+GSL+S + ++LP
Sbjct: 372 FRFNPSNNSYYDDMDGDGVLCMAVDILPTEFAKEASQHFGDILSGFVGSLASMTEISDLP 431
Query: 422 SHLRRACIAHGGALTTLYEYIPRMRKSDSEDVSDN-LAKGHSNKKKHNLLVSLSGHLFDQ 480
+HL+RACI++ G LT+LYEYIPRMRKS+ E+ DN +A G S+++ N+LVSLSGHLFD+
Sbjct: 432 AHLKRACISYRGELTSLYEYIPRMRKSNPEEAQDNIIANGVSSQRTFNILVSLSGHLFDK 491
Query: 481 FLINEALDIIEAAGGSFHLVKCQVGQSTEALSFSELEVGADDSAVLDQIIDSLTSLANAS 540
FLINEALD+IEAAGGSFHL KC++GQS +A S+SELEVGADD VLDQIIDSLT LAN +
Sbjct: 492 FLINEALDMIEAAGGSFHLAKCELGQSADAESYSELEVGADDKRVLDQIIDSLTRLANPN 551
Query: 541 ENNRDQISGINRISLRIGKV-QETATQKGPGTKGTSSVLIIGAGRVCRPAAELLASFGS- 598
E+ N+ISL+IGKV QE ++ P S VLI+GAGRVCRPAA+ LAS +
Sbjct: 552 EDYISPHREANKISLKIGKVQQENEIKEKPEMTKKSGVLILGAGRVCRPAADFLASVRTI 611
Query: 599 PSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLCKCIS 658
S Q KT D E + D+ V+VASLYLKDA+E +EGI + EAV+LDVSD +SL K +S
Sbjct: 612 SSQQWYKTYFGADSEEKTDVHVIVASLYLKDAKETVEGISDVEAVRLDVSDSESLLKYVS 671
Query: 659 QVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGEMGLDP 718
QV++V+SLLPASCH +VA CIE KKHLVTASY+DD S L EKAK AGITILGEMGLDP
Sbjct: 672 QVDVVLSLLPASCHAVVAKTCIELKKHLVTASYVDDETSMLHEKAKSAGITILGEMGLDP 731
Query: 719 GIDHMMAMKMINHAHVRKGKIKSFTSYCGGLPSPAAANNPLAYKFSWSPAGAIRAGRNPA 778
GIDHMMAMKMIN AH++KGK+KSFTSYCGGLPSPAAANNPLAYKFSW+PAGAIRAG+NPA
Sbjct: 732 GIDHMMAMKMINDAHIKKGKVKSFTSYCGGLPSPAAANNPLAYKFSWNPAGAIRAGQNPA 791
Query: 779 IYLFNGKTVQVDGDSLYDSAEKFRIADLPAFALECLPNRNSLVYGDIYGIGKEASTIFRG 838
Y NG + VDG +LYDSA +FR+ +LPAFALECLPNR+SLVYG+ YGI EA+TIFRG
Sbjct: 792 KYKSNGDIIHVDGKNLYDSAARFRVPNLPAFALECLPNRDSLVYGEHYGIESEATTIFRG 851
Query: 839 TLRYEGFGEIMGTLGRIGFFSAETHPVLKQGSGPTFRMFLCEILKMDSQKMGEAPLGEKE 898
TLRYEGF IM TL ++GFF +E + VL G TF L IL D+ E GE+E
Sbjct: 852 TLRYEGFSMIMATLSKLGFFDSEANQVLSTGKRITFGALLSNILNKDADNESEPLAGEEE 911
Query: 899 ITERILSLGHCKERETASKAAKTIIFLGLHEQTEIPASCESPFSVTCLLMEEKLAYSSTE 958
I++RI+ LGH K ETA+KAAKTI+FLG +E+ E+P+ C+S F TC LMEEKLAYS E
Sbjct: 912 ISKRIIKLGHSK--ETAAKAAKTIVFLGFNEEREVPSLCKSVFDATCYLMEEKLAYSGNE 969
Query: 959 EDMVLLHHEVEVEFPDGQPSENNRATLLEFGKMKNGKMISAMALTVGIPAGIAAMLLLVN 1018
+DMVLLHHEVEVEF + + E + ATLLEFG +KNG+ +AMA TVGIPA I A+LL+ +
Sbjct: 970 QDMVLLHHEVEVEFLESKRIEKHTATLLEFGDIKNGQTTTAMAKTVGIPAAIGALLLIED 1029
Query: 1019 KIKTRGVLRPIEPEVYVPALDMLQAYGIKLVEKS 1052
KIKTRGVLRP+E EVY+PALD+LQAYGIKL+EK+
Sbjct: 1030 KIKTRGVLRPLEAEVYLPALDILQAYGIKLMEKA 1063
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|2052510|gb|AAB96825.1| lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1561 bits (4043), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 748/1054 (70%), Positives = 890/1054 (84%), Gaps = 7/1054 (0%)
Query: 4 LGNGVVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPSTKRIHHDVLYED 63
LGNGVVGIL+E+VNKWERR PLTPSHCARLLH G+D++G++RIVVQPS KRIHHD LYED
Sbjct: 12 LGNGVVGILAETVNKWERRTPLTPSHCARLLHGGKDRTGISRIVVQPSAKRIHHDALYED 71
Query: 64 VGCQISEDLSECGLVLGIKQPKLEMILPDKAYAFFSHTHKAQRENMPLLDKILAERVSLY 123
VGC+IS+DLS+CGL+LGIKQP+LEMILP++AYAFFSHTHKAQ+ENMPLLDKIL+ERV+L
Sbjct: 72 VGCEISDDLSDCGLILGIKQPELEMILPERAYAFFSHTHKAQKENMPLLDKILSERVTLC 131
Query: 124 DYELIVGDNGRRLLAFGKFAGRAGMIDFLHGLGQRYLSLGYSTPFLSLGASYMYSSLAAA 183
DYELIVGD+G+RLLAFGK+AGRAG++DFLHGLGQRYLSLGYSTPFLSLGASYMYSSLAAA
Sbjct: 132 DYELIVGDHGKRLLAFGKYAGRAGLVDFLHGLGQRYLSLGYSTPFLSLGASYMYSSLAAA 191
Query: 184 KAAVISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFGK 243
KAAVISVGEEI++ GLP GICPLVF+FTG+GNVSLGAQEIFKLLPHTFVEPS+LPELF K
Sbjct: 192 KAAVISVGEEIASQGLPLGICPLVFVFTGTGNVSLGAQEIFKLLPHTFVEPSKLPELFVK 251
Query: 244 AK--DQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAPY 301
K Q+G ++KR++QVYGC++TS+DMVEHKDP+K FDKADYYAHPEHYNPVFH+KI+PY
Sbjct: 252 DKGISQNGISTKRVYQVYGCIITSQDMVEHKDPSKSFDKADYYAHPEHYNPVFHEKISPY 311
Query: 302 ASVIVNCMYWEQRFPRLLSTQQLQDLVRKGCPLVGISDITCDIGGSLEFVNRTTSIDSSF 361
SV+VNCMYWE+RFP LLST+QLQDL +KG PLVGI DITCDIGGS+EFVNR T IDS F
Sbjct: 312 TSVLVNCMYWEKRFPCLLSTKQLQDLTKKGLPLVGICDITCDIGGSIEFVNRATLIDSPF 371
Query: 362 FRYDPLSDSYHDDLEGNGLVCQAVDTLPTEFAKEASQHFGDILLEFIGSLSSTVDFTELP 421
FR++P ++SY+DD++G+G++C AVD LPTEFAKEASQHFGDIL F+GSL+S + ++LP
Sbjct: 372 FRFNPSNNSYYDDMDGDGVLCMAVDILPTEFAKEASQHFGDILSGFVGSLASMTEISDLP 431
Query: 422 SHLRRACIAHGGALTTLYEYIPRMRKSDSEDVSDN-LAKGHSNKKKHNLLVSLSGHLFDQ 480
+HL+RACI++ G LT+LYEYIPRMRKS+ E+ DN +A G S+++ N+LVSLSGHLFD+
Sbjct: 432 AHLKRACISYRGELTSLYEYIPRMRKSNPEEAQDNIIANGVSSQRTFNILVSLSGHLFDK 491
Query: 481 FLINEALDIIEAAGGSFHLVKCQVGQSTEALSFSELEVGADDSAVLDQIIDSLTSLANAS 540
FLINEALD+IEAAGGSFHL KC++GQS +A S+SELEVGADD VLDQIIDSLT LAN +
Sbjct: 492 FLINEALDMIEAAGGSFHLAKCELGQSADAESYSELEVGADDKRVLDQIIDSLTRLANPN 551
Query: 541 ENNRDQISGINRISLRIGKV-QETATQKGPGTKGTSSVLIIGAGRVCRPAAELLASFGS- 598
E+ N+ISL+IGKV QE ++ P S VLI+GAGRVCRPAA+ LAS +
Sbjct: 552 EDYISPHREANKISLKIGKVQQENEIKEKPEMTKKSGVLILGAGRVCRPAADFLASVRTI 611
Query: 599 PSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLCKCIS 658
S Q KT D E + D+ V+VASLYLKDA+E +EGI + EAV+LDVSD +SL K +S
Sbjct: 612 SSQQWYKTYFGADSEEKTDVHVIVASLYLKDAKETVEGISDVEAVRLDVSDSESLLKYVS 671
Query: 659 QVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGEMGLDP 718
QV++V+SLLPASCH +VA CIE KKHLVTASY+DD S L EKAK AGITILGEMGLDP
Sbjct: 672 QVDVVLSLLPASCHAVVAKTCIELKKHLVTASYVDDETSMLHEKAKSAGITILGEMGLDP 731
Query: 719 GIDHMMAMKMINHAHVRKGKIKSFTSYCGGLPSPAAANNPLAYKFSWSPAGAIRAGRNPA 778
GIDHMMAMKMIN AH++KGK+KSFTSYCGGLPSPAAANNPLAYKFSW+PAGAIRAG+NPA
Sbjct: 732 GIDHMMAMKMINDAHIKKGKVKSFTSYCGGLPSPAAANNPLAYKFSWNPAGAIRAGQNPA 791
Query: 779 IYLFNGKTVQVDGDSLYDSAEKFRIADLPAFALECLPNRNSLVYGDIYGIGKEASTIFRG 838
Y NG + VDG +LYDSA +FR+ +LPAFALECLPNR+SLVYG+ YGI EA+TIFRG
Sbjct: 792 KYKSNGDIIHVDGKNLYDSAARFRVPNLPAFALECLPNRDSLVYGEHYGIESEATTIFRG 851
Query: 839 TLRYEGFGEIMGTLGRIGFFSAETHPVLKQGSGPTFRMFLCEILKMDSQKMGEAPLGEKE 898
TLRYEGF IM TL ++GFF +E + VL G TF L IL D+ E GE+E
Sbjct: 852 TLRYEGFSMIMATLSKLGFFDSEANQVLSTGKRITFGALLSNILNKDADNESEPLAGEEE 911
Query: 899 ITERILSLGHCKERETASKAAKTIIFLGLHEQTEIPASCESPFSVTCLLMEEKLAYSSTE 958
I++RI+ LGH K ETA+KAAKTI+FLG +E+ E+P+ C+S F TC LMEEKLAYS E
Sbjct: 912 ISKRIIKLGHSK--ETAAKAAKTIVFLGFNEEREVPSLCKSVFDATCYLMEEKLAYSGNE 969
Query: 959 EDMVLLHHEVEVEFPDGQPSENNRATLLEFGKMKNGKMISAMALTVGIPAGIAAMLLLVN 1018
+DMVLLHHEVEVEF + + E + ATLLEFG +KNG+ +AMA TVGIPA I A+LL+ +
Sbjct: 970 QDMVLLHHEVEVEFLESKRIEKHTATLLEFGDIKNGQTTTAMAKTVGIPAAIGALLLIED 1029
Query: 1019 KIKTRGVLRPIEPEVYVPALDMLQAYGIKLVEKS 1052
KIKTRGVLRP E EVY+PALD+LQAYGIKL+EK+
Sbjct: 1030 KIKTRGVLRPFEAEVYLPALDILQAYGIKLMEKA 1063
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18418158|ref|NP_567914.1| lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme [Arabidopsis thaliana] gi|30689619|ref|NP_849486.1| lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme [Arabidopsis thaliana] gi|332660782|gb|AEE86182.1| lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme [Arabidopsis thaliana] gi|332660783|gb|AEE86183.1| lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1561 bits (4041), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 747/1054 (70%), Positives = 890/1054 (84%), Gaps = 7/1054 (0%)
Query: 4 LGNGVVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPSTKRIHHDVLYED 63
LGNGVVGIL+E+VNKWERR PLTPSHCARLLH G+D++G++RIVVQPS KRIHHD LYED
Sbjct: 12 LGNGVVGILAETVNKWERRTPLTPSHCARLLHGGKDRTGISRIVVQPSAKRIHHDALYED 71
Query: 64 VGCQISEDLSECGLVLGIKQPKLEMILPDKAYAFFSHTHKAQRENMPLLDKILAERVSLY 123
VGC+IS+DLS+CGL+LGIKQP+LEMILP++AYAFFSHTHKAQ+ENMPLLDKIL+ERV+L
Sbjct: 72 VGCEISDDLSDCGLILGIKQPELEMILPERAYAFFSHTHKAQKENMPLLDKILSERVTLC 131
Query: 124 DYELIVGDNGRRLLAFGKFAGRAGMIDFLHGLGQRYLSLGYSTPFLSLGASYMYSSLAAA 183
DYELIVGD+G+RLLAFGK+AGRAG++DFLHGLGQRYLSLGYSTPFLSLGASYMYSSLAAA
Sbjct: 132 DYELIVGDHGKRLLAFGKYAGRAGLVDFLHGLGQRYLSLGYSTPFLSLGASYMYSSLAAA 191
Query: 184 KAAVISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFGK 243
KAAVISVGEEI++ GLP GICPLVF+FTG+GNVSLGAQEIFKLLPHTFVEPS+LPELF K
Sbjct: 192 KAAVISVGEEIASQGLPLGICPLVFVFTGTGNVSLGAQEIFKLLPHTFVEPSKLPELFVK 251
Query: 244 AK--DQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAPY 301
K Q+G ++KR++QVYGC++TS+DMVEHKDP+K FDKADYYAHPEHYNPVFH+KI+PY
Sbjct: 252 DKGISQNGISTKRVYQVYGCIITSQDMVEHKDPSKSFDKADYYAHPEHYNPVFHEKISPY 311
Query: 302 ASVIVNCMYWEQRFPRLLSTQQLQDLVRKGCPLVGISDITCDIGGSLEFVNRTTSIDSSF 361
SV+VNCMYWE+RFP LLST+QLQDL +KG PLVGI DITCDIGGS+EFVNR T IDS F
Sbjct: 312 TSVLVNCMYWEKRFPCLLSTKQLQDLTKKGLPLVGICDITCDIGGSIEFVNRATLIDSPF 371
Query: 362 FRYDPLSDSYHDDLEGNGLVCQAVDTLPTEFAKEASQHFGDILLEFIGSLSSTVDFTELP 421
FR++P ++SY+DD++G+G++C AVD LPTEFAKEASQHFGDIL F+GSL+S + ++LP
Sbjct: 372 FRFNPSNNSYYDDMDGDGVLCMAVDILPTEFAKEASQHFGDILSGFVGSLASMTEISDLP 431
Query: 422 SHLRRACIAHGGALTTLYEYIPRMRKSDSEDVSDN-LAKGHSNKKKHNLLVSLSGHLFDQ 480
+HL+RACI++ G LT+LYEYIPRMRKS+ E+ DN +A G S+++ N+LVSLSGHLFD+
Sbjct: 432 AHLKRACISYRGELTSLYEYIPRMRKSNPEEAQDNIIANGVSSQRTFNILVSLSGHLFDK 491
Query: 481 FLINEALDIIEAAGGSFHLVKCQVGQSTEALSFSELEVGADDSAVLDQIIDSLTSLANAS 540
FLINEALD+IEAAGGSFHL KC++GQS +A S+SELEVGADD VLDQIIDSLT LAN +
Sbjct: 492 FLINEALDMIEAAGGSFHLAKCELGQSADAESYSELEVGADDKRVLDQIIDSLTRLANPN 551
Query: 541 ENNRDQISGINRISLRIGKV-QETATQKGPGTKGTSSVLIIGAGRVCRPAAELLASFGS- 598
E+ N+ISL+IGKV QE ++ P S VLI+GAGRVCRPAA+ LAS +
Sbjct: 552 EDYISPHREANKISLKIGKVQQENEIKEKPEMTKKSGVLILGAGRVCRPAADFLASVRTI 611
Query: 599 PSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLCKCIS 658
S Q KT D E + D+ V+VASLYLKDA+E +EGI + EAV+LDVSD +SL K +S
Sbjct: 612 SSQQWYKTYFGADSEEKTDVHVIVASLYLKDAKETVEGISDVEAVRLDVSDSESLLKYVS 671
Query: 659 QVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGEMGLDP 718
QV++V+SLLPASCH +VA CIE KKHLVTASY+DD S L EKAK AGITILGEMGLDP
Sbjct: 672 QVDVVLSLLPASCHAVVAKTCIELKKHLVTASYVDDETSMLHEKAKSAGITILGEMGLDP 731
Query: 719 GIDHMMAMKMINHAHVRKGKIKSFTSYCGGLPSPAAANNPLAYKFSWSPAGAIRAGRNPA 778
GIDHMMAMKMIN AH++KGK+KSFTSYCGGLPSPAAANNPLAYKFSW+PAGAIRAG+NPA
Sbjct: 732 GIDHMMAMKMINDAHIKKGKVKSFTSYCGGLPSPAAANNPLAYKFSWNPAGAIRAGQNPA 791
Query: 779 IYLFNGKTVQVDGDSLYDSAEKFRIADLPAFALECLPNRNSLVYGDIYGIGKEASTIFRG 838
Y NG + VDG +LYDSA +FR+ +LPAFALEC PNR+SLVYG+ YGI EA+TIFRG
Sbjct: 792 KYKSNGDIIHVDGKNLYDSAARFRVPNLPAFALECFPNRDSLVYGEHYGIESEATTIFRG 851
Query: 839 TLRYEGFGEIMGTLGRIGFFSAETHPVLKQGSGPTFRMFLCEILKMDSQKMGEAPLGEKE 898
TLRYEGF IM TL ++GFF +E + VL G TF L IL D+ E GE+E
Sbjct: 852 TLRYEGFSMIMATLSKLGFFDSEANQVLSTGKRITFGALLSNILNKDADNESEPLAGEEE 911
Query: 899 ITERILSLGHCKERETASKAAKTIIFLGLHEQTEIPASCESPFSVTCLLMEEKLAYSSTE 958
I++RI+ LGH K ETA+KAAKTI+FLG +E+ E+P+ C+S F TC LMEEKLAYS E
Sbjct: 912 ISKRIIKLGHSK--ETAAKAAKTIVFLGFNEEREVPSLCKSVFDATCYLMEEKLAYSGNE 969
Query: 959 EDMVLLHHEVEVEFPDGQPSENNRATLLEFGKMKNGKMISAMALTVGIPAGIAAMLLLVN 1018
+DMVLLHHEVEVEF + + E + ATLLEFG +KNG+ +AMA TVGIPA I A+LL+ +
Sbjct: 970 QDMVLLHHEVEVEFLESKRIEKHTATLLEFGDIKNGQTTTAMAKTVGIPAAIGALLLIED 1029
Query: 1019 KIKTRGVLRPIEPEVYVPALDMLQAYGIKLVEKS 1052
KIKTRGVLRP+E EVY+PALD+LQAYGIKL+EK+
Sbjct: 1030 KIKTRGVLRPLEAEVYLPALDILQAYGIKLMEKA 1063
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1053 | ||||||
| TAIR|locus:2125964 | 1064 | AT4G33150 [Arabidopsis thalian | 0.994 | 0.984 | 0.697 | 0.0 | |
| DICTYBASE|DDB_G0284835 | 909 | aass "lysine-ketoglutarate red | 0.408 | 0.473 | 0.464 | 4.6e-163 | |
| UNIPROTKB|E1BWX4 | 930 | AASS "Uncharacterized protein" | 0.438 | 0.496 | 0.423 | 7.8e-144 | |
| FB|FBgn0025687 | 928 | LKR "lysine ketoglutarate redu | 0.423 | 0.480 | 0.391 | 4.4e-143 | |
| WB|WBGene00019819 | 934 | R02D3.1 [Caenorhabditis elegan | 0.424 | 0.478 | 0.401 | 1.9e-140 | |
| UNIPROTKB|F1PEA3 | 915 | AASS "Uncharacterized protein" | 0.427 | 0.491 | 0.406 | 3.9e-138 | |
| ZFIN|ZDB-GENE-061220-8 | 935 | aass "aminoadipate-semialdehyd | 0.410 | 0.462 | 0.403 | 1.3e-137 | |
| UNIPROTKB|Q9UDR5 | 926 | AASS "Alpha-aminoadipic semial | 0.428 | 0.487 | 0.403 | 3.9e-136 | |
| UNIPROTKB|A8E657 | 926 | AASS "Alpha-aminoadipic semial | 0.461 | 0.524 | 0.392 | 8.4e-136 | |
| MGI|MGI:1353573 | 926 | Aass "aminoadipate-semialdehyd | 0.474 | 0.539 | 0.389 | 1.4e-135 |
| TAIR|locus:2125964 AT4G33150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3848 (1359.6 bits), Expect = 0., P = 0.
Identities = 735/1054 (69%), Positives = 878/1054 (83%)
Query: 4 LGNGVVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPSTKRIHHDVLYED 63
LGNGVVGIL+E+VNKWERR PLTPSHCARLLH G+D++G++RIVVQPS KRIHHD LYED
Sbjct: 12 LGNGVVGILAETVNKWERRTPLTPSHCARLLHGGKDRTGISRIVVQPSAKRIHHDALYED 71
Query: 64 VGCQISEDLSECGLVLGIKQPKLEMILPDKAYAFFSHTHKAQRENMPLLDKILAERVSLY 123
VGC+IS+DLS+CGL+LGIKQP+LEMILP++AYAFFSHTHKAQ+ENMPLLDKIL+ERV+L
Sbjct: 72 VGCEISDDLSDCGLILGIKQPELEMILPERAYAFFSHTHKAQKENMPLLDKILSERVTLC 131
Query: 124 DYELIVGDNGRRLLAFGKFAGRAGMIDFLHGLGQRYLSLGYSTPFLSLGASYMYSSLAAA 183
DYELIVGD+G+RLLAFGK+AGRAG++DFLHGLGQRYLSLGYSTPFLSLGASYMYSSLAAA
Sbjct: 132 DYELIVGDHGKRLLAFGKYAGRAGLVDFLHGLGQRYLSLGYSTPFLSLGASYMYSSLAAA 191
Query: 184 KAAVISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFGK 243
KAAVISVGEEI++ GLP GICPLVF+FTG+GNVSLGAQEIFKLLPHTFVEPS+LPELF K
Sbjct: 192 KAAVISVGEEIASQGLPLGICPLVFVFTGTGNVSLGAQEIFKLLPHTFVEPSKLPELFVK 251
Query: 244 AK--DQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAPY 301
K Q+G ++KR++QVYGC++TS+DMVEHKDP+K FDKADYYAHPEHYNPVFH+KI+PY
Sbjct: 252 DKGISQNGISTKRVYQVYGCIITSQDMVEHKDPSKSFDKADYYAHPEHYNPVFHEKISPY 311
Query: 302 ASVIVNCMYWEQRFPRLLSTQQLQDLVRKGCPLVGISDITCDIGGSLEFVNRTTSIDSSF 361
SV+VNCMYWE+RFP LLST+QLQDL +KG PLVGI DITCDIGGS+EFVNR T IDS F
Sbjct: 312 TSVLVNCMYWEKRFPCLLSTKQLQDLTKKGLPLVGICDITCDIGGSIEFVNRATLIDSPF 371
Query: 362 FRYDPLSDSYHDDLEGNGLVCQAVDTLPTEFAKEASQHFGDILLEFIGSLSSTVDFTELP 421
FR++P ++SY+DD++G+G++C AVD LPTEFAKEASQHFGDIL F+GSL+S + ++LP
Sbjct: 372 FRFNPSNNSYYDDMDGDGVLCMAVDILPTEFAKEASQHFGDILSGFVGSLASMTEISDLP 431
Query: 422 SHLRRACIAHGGALTTLYEYIPRMRKSDSEDVSDNL-AKGHSNKKKHNLLVSLSGHLFDQ 480
+HL+RACI++ G LT+LYEYIPRMRKS+ E+ DN+ A G S+++ N+LVSLSGHLFD+
Sbjct: 432 AHLKRACISYRGELTSLYEYIPRMRKSNPEEAQDNIIANGVSSQRTFNILVSLSGHLFDK 491
Query: 481 FLINEALDIIEAAGGSFHLVKCQVGQSTEALSFSELEVGADDSAVLDQIIDSLTSLANAS 540
FLINEALD+IEAAGGSFHL KC++GQS +A S+SELEVGADD VLDQIIDSLT LAN +
Sbjct: 492 FLINEALDMIEAAGGSFHLAKCELGQSADAESYSELEVGADDKRVLDQIIDSLTRLANPN 551
Query: 541 ENNRDQISGINRISLRIGKVQ-ETATQKGPGTKGTSSVLIIGAGRVCRPAAELLASFGS- 598
E+ N+ISL+IGKVQ E ++ P S VLI+GAGRVCRPAA+ LAS +
Sbjct: 552 EDYISPHREANKISLKIGKVQQENEIKEKPEMTKKSGVLILGAGRVCRPAADFLASVRTI 611
Query: 599 PSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLCKCIS 658
S Q KT D E + D+ V+VASLYLKDA+E +EGI + EAV+LDVSD +SL K +S
Sbjct: 612 SSQQWYKTYFGADSEEKTDVHVIVASLYLKDAKETVEGISDVEAVRLDVSDSESLLKYVS 671
Query: 659 QVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGEMGLDP 718
QV++V+SLLPASCH +VA CIE KKHLVTASY+DD S L EKAK AGITILGEMGLDP
Sbjct: 672 QVDVVLSLLPASCHAVVAKTCIELKKHLVTASYVDDETSMLHEKAKSAGITILGEMGLDP 731
Query: 719 GIDHMMAMKMINHAHVRKGKIKSFTSYCGGXXXXXXXXXXXXYKFSWSPAGAIRAGRNPA 778
GIDHMMAMKMIN AH++KGK+KSFTSYCGG YKFSW+PAGAIRAG+NPA
Sbjct: 732 GIDHMMAMKMINDAHIKKGKVKSFTSYCGGLPSPAAANNPLAYKFSWNPAGAIRAGQNPA 791
Query: 779 IYLFNGKTVQVDGDSLYDSAEKFRIADLPAFALECLPNRNSLVYGDIYGIGKEASTIFRG 838
Y NG + VDG +LYDSA +FR+ +LPAFALEC PNR+SLVYG+ YGI EA+TIFRG
Sbjct: 792 KYKSNGDIIHVDGKNLYDSAARFRVPNLPAFALECFPNRDSLVYGEHYGIESEATTIFRG 851
Query: 839 TLRYEGFGEIMGTLGRIGFFSAETHPVLKQGSGPTFRMFLCEILKMDSQKMGEAPLGEKE 898
TLRYEGF IM TL ++GFF +E + VL G TF L IL D+ E GE+E
Sbjct: 852 TLRYEGFSMIMATLSKLGFFDSEANQVLSTGKRITFGALLSNILNKDADNESEPLAGEEE 911
Query: 899 ITERILSLGHCKERETASKAAKTIIFLGLHEQTEIPASCESPFSVTCLLMEEKLAYSSTE 958
I++RI+ LGH KE TA+KAAKTI+FLG +E+ E+P+ C+S F TC LMEEKLAYS E
Sbjct: 912 ISKRIIKLGHSKE--TAAKAAKTIVFLGFNEEREVPSLCKSVFDATCYLMEEKLAYSGNE 969
Query: 959 EDMVLLHHEVEVEFPDGQPSENNRATLLEFGKMKNGKMISAMALTVGIPAGIAAMLLLVN 1018
+DMVLLHHEVEVEF + + E + ATLLEFG +KNG+ +AMA TVGIPA I A+LL+ +
Sbjct: 970 QDMVLLHHEVEVEFLESKRIEKHTATLLEFGDIKNGQTTTAMAKTVGIPAAIGALLLIED 1029
Query: 1019 KIKTRGVLRPIEPEVYVPALDMLQAYGIKLVEKS 1052
KIKTRGVLRP+E EVY+PALD+LQAYGIKL+EK+
Sbjct: 1030 KIKTRGVLRPLEAEVYLPALDILQAYGIKLMEKA 1063
|
|
| DICTYBASE|DDB_G0284835 aass "lysine-ketoglutarate reductase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1017 (363.1 bits), Expect = 4.6e-163, Sum P(2) = 4.6e-163
Identities = 212/456 (46%), Positives = 285/456 (62%)
Query: 9 VGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPSTKRIHHDVLYEDVGCQI 68
+GI E N+WERRAPL PSH L+ K G+ +++VQPST R + +VLYE G I
Sbjct: 7 LGIRREDKNRWERRAPLAPSHVEELV-----KKGI-KVIVQPSTLRNYPNVLYEKAGAII 60
Query: 69 SEDLSECGLVLGIKQPKLEMILPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYELI 128
EDL EC +++ +K+ E + DK Y FFSHT KAQ NM +LD+I +R+ L DYE I
Sbjct: 61 QEDLKECDVIVAVKEVPSEYLYNDKTYIFFSHTIKAQPYNMAMLDEINKKRIRLIDYERI 120
Query: 129 VGDNGRRLLAFGKFAGRAGMIDFLHGLGQRYLSLGYSTPFLSLGASYMYSSLAAAKAAVI 188
D RRL+ FG FAG AGMID LH LG R L+ G+STPFL +G SY+YS L +A AV
Sbjct: 121 TDDQNRRLVRFGSFAGYAGMIDMLHALGDRLLAKGFSTPFLHVGYSYVYSKLESAMEAVK 180
Query: 189 SVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFGKAKDQH 248
++GEEIS +GLP + P F FT G VS GA +IFKLLPH V P + EL K +
Sbjct: 181 AIGEEISQVGLPDDLLPFTFAFTSDGAVSQGALKIFKLLPHKMVTPDEMVELVKNKKGER 240
Query: 249 GGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAPYASVIVNC 308
G +YG ++TSE M DP K F+KA+YYA P Y P+F +K APY S I+NC
Sbjct: 241 G-------ILYGTIITSEHMAAPIDPEKKFNKAEYYADPSKYKPIFCEKYAPYISCIINC 293
Query: 309 MYWEQRFPRLLSTQQLQDLVR-KGCPLVGISDITCDIGGSLEFVNRTTSIDSSFFRYDPL 367
MYW+ ++PRL++ +Q+++LV L+G++DI+ D+ GSLEF+ TTSIDS + YDP
Sbjct: 294 MYWDAKYPRLITIRQMEELVETNNSRLIGVADISADVNGSLEFLMTTTSIDSPLYIYDPR 353
Query: 368 SDSYHDD------LEGNGLVCQAVDTLPTEFAKEASQHFGDILLEFIGSLSST------V 415
+ HD + +G++ AVD LPTEF KEA+Q FGD LL+F+ + +
Sbjct: 354 TQEVHDPTTDQQYMYRDGILFLAVDNLPTEFPKEATQWFGDHLLKFMEQVVKSDPKLPYE 413
Query: 416 DFTELPSHLRRACIAHGGALTTLYEYIPRMRKSDSE 451
T++ ++RA I G+LT +EYI +RK E
Sbjct: 414 KMTDIAPEMKRAIITCHGSLTPPFEYITELRKKREE 449
|
|
| UNIPROTKB|E1BWX4 AASS "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 913 (326.5 bits), Expect = 7.8e-144, Sum P(2) = 7.8e-144
Identities = 214/505 (42%), Positives = 300/505 (59%)
Query: 8 VVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPSTKRIHHDVLYEDVGCQ 67
V+ I E V+ WERRAPL P H L G +++VQPS +R H+ Y G
Sbjct: 26 VLAIRREDVSAWERRAPLAPKHVKELTQMGY------KVLVQPSNRRAIHEKDYIKAGGI 79
Query: 68 ISEDLSECGLVLGIKQPKLEMILPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYEL 127
I ED+SE L++G+K+P ++P K YAFFSHT KAQ NMPLLD+IL + V L+DYE
Sbjct: 80 IQEDISEASLIVGVKRPPEGKLIPKKNYAFFSHTIKAQEANMPLLDEILRQEVRLFDYEK 139
Query: 128 IVGDNGRRLLAFGKFAGRAGMIDFLHGLGQRYLSLGYSTPFLSLGASYMYSSLAAAKAAV 187
+V G R++AFGK+AG AGMI+ LHGLG R+L+LG+ TPF+ +G ++ Y + + A AV
Sbjct: 140 MVDHKGMRVVAFGKWAGVAGMINILHGLGLRFLALGHHTPFMHIGMAHNYRNSSQAVQAV 199
Query: 188 ISVGEEISTLGL-PSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFGKAKD 246
G EIS LGL P + PL F+FTG+GNVS GAQE+F LP FVEP L E+
Sbjct: 200 RDAGYEIS-LGLMPKSVGPLTFVFTGTGNVSRGAQEMFNALPCEFVEPHELKEV------ 252
Query: 247 QHGGASKRIFQVYGCVVTSED-MVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAPYASVI 305
GAS + +VYG V++ +V +D +D ADY HPE Y F+ IAPY + +
Sbjct: 253 SRSGASD-LRKVYGTVLSRHHHLVRKRDGM--YDPADYDKHPELYTSRFNTDIAPYTTCL 309
Query: 306 VNCMYWEQRFPRLLSTQQLQDLV---------RKGCP-----LVGISDITCDIGGSLEFV 351
+N +YWEQ PRLLS Q Q L+ +GCP L+ I DI+ D GGS+EF+
Sbjct: 310 INGIYWEQNTPRLLSRQDAQKLLVPVKSAAGAPEGCPELPHKLLAICDISADTGGSIEFM 369
Query: 352 NRTTSIDSSFFRYDPLSDSYHDDLEGNGLVCQAVDTLPTEFAKEASQHFGDILLEFIGSL 411
T+IDS F YD HD +EG+G++ ++D LP + EA+++FGD+L +I +
Sbjct: 370 TECTTIDSPFCMYDADQHIIHDSVEGSGILMCSIDNLPAQLPIEATEYFGDMLFPYIEEM 429
Query: 412 -----SSTVDFTELPSHLRRACIAHGGALTTLYEYIPRMRKSDSEDVSDNLAKGHSNKKK 466
S ++ S +R A IA G+LT YEYI ++R +S + + +L+ G NKK+
Sbjct: 430 LLSEGSEPLENQNYSSVVRDAVIASNGSLTAKYEYIQKLR--ESREYAQSLSMG--NKKR 485
Query: 467 HNLLVS--LSGHLFDQFLINEALDI 489
+L S +SG + + + +DI
Sbjct: 486 VLVLGSGYVSGPVLEYLTRDSDVDI 510
|
|
| FB|FBgn0025687 LKR "lysine ketoglutarate reductase" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 821 (294.1 bits), Expect = 4.4e-143, Sum P(3) = 4.4e-143
Identities = 190/485 (39%), Positives = 279/485 (57%)
Query: 8 VVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPSTKRIHHDVLYEDVGCQ 67
V+ I E + WERRAP P+H +L+ K V +++VQPS +R + Y G
Sbjct: 23 VIAIRREDQSVWERRAPFGPTHVQKLV-----KQNV-KVIVQPSNRRAYPMQAYMQAGAH 76
Query: 68 ISEDLSECGLVLGIKQPKLEMILPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYEL 127
I ED+S+ ++ G+KQ ++ ++P K Y FFSHT KAQ NMPLLD IL +++ L DYE
Sbjct: 77 IQEDISDASVIFGVKQVPIDALIPGKTYCFFSHTIKAQESNMPLLDAILEKKIRLIDYER 136
Query: 128 IVGDNGRRLLAFGKFAGRAGMIDFLHGLGQRYLSLGYSTPFLSLGASYMYSSLAAAKAAV 187
I+ + G R +AFGK+AG AGM++ LHG+G R L+LG+ TPF+ +G ++ Y + + A+ A+
Sbjct: 137 IIDERGARQVAFGKYAGVAGMVNILHGIGLRLLALGHHTPFMHIGPAHNYRNSSMARQAI 196
Query: 188 ISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFGKAKDQ 247
G EIS +P I PL F+FTGSGNVS GAQE+F LP +V P PE+ K +
Sbjct: 197 RDCGYEISLGMMPKSIGPLTFVFTGSGNVSQGAQEVFSELPIEYV-P---PEMLRKVAE- 251
Query: 248 HGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAPYASVIVN 307
HG +K +YGC V+ D +E ++ GFD +Y PE Y F KIAPYASVIVN
Sbjct: 252 HGNQNK----LYGCEVSRSDHLERREGG-GFDAKEYDEFPERYISTFSTKIAPYASVIVN 306
Query: 308 CMYWEQRFPRLLSTQQLQDLVR----------KGCP-----LVGISDITCDIGGSLEFVN 352
+YW P+L+S ++L+R KG P ++ I DI+ D GGS+EF+N
Sbjct: 307 GIYWAVGSPKLISIPDAKNLLRPANTPWLPTSKGSPALPHRMLAICDISADPGGSIEFMN 366
Query: 353 RTTSIDSSFFRYDPLSDSYHDDLEGNG-LVCQAVDTLPTEFAKEASQHFGDILLEFIGSL 411
T+ID+ F YD + +G G LVC ++D +PT+ +E++ FG++L + +
Sbjct: 367 ECTTIDTPFCLYDADRNKDTKSFKGPGVLVC-SIDNMPTQLPRESTDLFGELLAPHVHDI 425
Query: 412 SSTVDFTELPSH-----LRRACIAHGGALTTLYEYIPRMRKSDSEDVSDNLAKGHSNKKK 466
+ L ++ A IA G LT ++YI +R+S S S + +G S K
Sbjct: 426 IKSDAKKPLAEENFSYPIQSAIIASNGQLTEGFQYIQELRESQSHR-SRHKMEGSSESDK 484
Query: 467 HNLLV 471
L++
Sbjct: 485 KVLVL 489
|
|
| WB|WBGene00019819 R02D3.1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 852 (305.0 bits), Expect = 1.9e-140, Sum P(2) = 1.9e-140
Identities = 196/488 (40%), Positives = 291/488 (59%)
Query: 5 GNGVVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPSTKRIHHDVLYEDV 64
G +GI E+VN WERRAPL P+H RL KSGV +++QPS +R + Y
Sbjct: 28 GTPTIGIRRETVNSWERRAPLAPTHVKRLT-----KSGV-NVLIQPSNRRAYPIQDYISA 81
Query: 65 GCQISEDLSECGLVLGIKQPKLEMILPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYD 124
G + EDLSE +++ +K ++ ++P+K YAFFSHT KAQ++NM +LD IL + L D
Sbjct: 82 GAIVREDLSEAHIIMSVKSVPIDQLIPNKTYAFFSHTIKAQQDNMEMLDTILQRNIRLLD 141
Query: 125 YELIVGDNGRRLLAFGKFAGRAGMIDFLHGLGQRYLSLGYSTPFLSLGASYMYSSLAAAK 184
YE I D G+RL+ FGK+AG AG ID LHG+G R L+LG++TPFL +G ++ Y+ A
Sbjct: 142 YEKICDDKGKRLVMFGKWAGNAGFIDILHGIGLRLLALGHNTPFLHMGLAHNYNDSHMAI 201
Query: 185 AAVISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFGKA 244
A+ +G EI+ +P + PL+F+FTGSGNVS GA+E+F+ LPH +V+ + LP++
Sbjct: 202 NALRDIGYEIALDRMPRSLGPLIFVFTGSGNVSQGARELFEHLPHEYVDVATLPKVA--- 258
Query: 245 KDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKG--FDKADYYAHPEHYNPVFHKKIAPYA 302
Q G +K VYGCVVT +D H P G FDK ++ P+ Y F +IAPYA
Sbjct: 259 --QKGQLNK----VYGCVVTRKD---HFVPKHGGPFDKKEFEQFPDRYTSKFATEIAPYA 309
Query: 303 SVIVNCMYWEQRFPRLLSTQQLQDL---VRK----GCP-----LVGISDITCDIGGSLEF 350
SVI+N +YW+ + PRL++ ++L V++ GCP L+ + DI+ D GGS+EF
Sbjct: 310 SVIINGVYWDAQSPRLITIPDAKNLLTPVQRYDTPGCPTLPHHLIALCDISADPGGSVEF 369
Query: 351 VNRTTSIDSSFFRYDPLSDSYHDDLEG-NG-LVCQAVDTLPTEFAKEASQHFGDILLEFI 408
+ T+ID F YD ++ D + +G LVC ++D +P + EA++ FG++L ++
Sbjct: 370 MRECTTIDKPFAIYDADFNTSSDSFDAASGCLVC-SIDNMPAQMPIEATEQFGNLLYPWL 428
Query: 409 GSLSSTVD---FTELP--SHLRRACIAHGGALTTLYEYIPRMRKSDSEDVSDNL-AKGHS 462
L +T + F L + ++ A I G LT +EYI ++RK + S N G +
Sbjct: 429 WDLLNTSNDQHFDRLQCRTEIKNAIITDQGKLTPNFEYIAQLRKDKAASASANSRVMGGT 488
Query: 463 NKKKHNLL 470
K+ LL
Sbjct: 489 TDKRVLLL 496
|
|
| UNIPROTKB|F1PEA3 AASS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 843 (301.8 bits), Expect = 3.9e-138, Sum P(3) = 3.9e-138
Identities = 202/497 (40%), Positives = 292/497 (58%)
Query: 8 VVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPSTKRIHHDVLYEDVGCQ 67
V+ + E VN WERRAPL P H + + G ++++QPS +R HD Y G
Sbjct: 14 VMALRREDVNAWERRAPLAPRHIKGITNLGY------KVLIQPSNRRAIHDKEYVKAGGI 67
Query: 68 ISEDLSECGLVLGIKQPKLEMILPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYEL 127
+ ED+SE L+LG+K+P E ++ K YAFFSHT KAQ NM LLD+IL + + L DYE
Sbjct: 68 LQEDISEACLILGVKRPPEEKLMSKKTYAFFSHTIKAQEANMGLLDEILRQEIRLIDYEK 127
Query: 128 IVGDNGRRLLAFGKFAGRAGMIDFLHGLGQRYLSLGYSTPFLSLGASYMYSSLAAAKAAV 187
+V G R++AFG++AG AGMI+ LHG+G R L+LG+ TPF+ +G ++ Y + + A AV
Sbjct: 128 MVDHRGTRVVAFGQWAGVAGMINILHGMGLRLLALGHHTPFMHIGMAHNYRNSSQAVQAV 187
Query: 188 ISVGEEISTLGL-PSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFGKAKD 246
G EIS LGL P I PL F+FTG+GNVS GAQEIF LP +VEP L E+
Sbjct: 188 RDAGYEIS-LGLMPKSIGPLTFVFTGTGNVSKGAQEIFNELPCEYVEPHELKEV-----S 241
Query: 247 QHGGASKRIFQVYGCVVTSEDMVEHKDPTKG-FDKADYYAHPEHYNPVFHKKIAPYASVI 305
Q+G K VYG V++ + K T G +D +Y +PE Y F+ IAPY + +
Sbjct: 242 QNGDLRK----VYGTVLSRHHHLVRK--TDGVYDPVEYDKYPERYISRFNTDIAPYTTCL 295
Query: 306 VNCMYWEQRFPRLLSTQQLQDLVR---------KGCP-----LVGISDITCDIGGSLEFV 351
+N +YWEQ PRLL+ Q +Q L+ +GCP LV I DI+ D GGS+EF+
Sbjct: 296 INGIYWEQNTPRLLTRQDVQSLLVPGKSSVAGVEGCPALPHKLVAICDISADTGGSIEFM 355
Query: 352 NRTTSIDSSFFRYDPLSDSYHDDLEGNGLVCQAVDTLPTEFAKEASQHFGDILLEFIGSL 411
T+I+ F YD HD +EG+G++ ++D LP + EA+++FGD+L ++ +
Sbjct: 356 TECTTIEHPFCMYDADQHIIHDSVEGSGILMCSIDNLPAQLPIEATEYFGDMLYPYVEEM 415
Query: 412 SSTVDFTE-LPSH-----LRRACIAHGGALTTLYEYIPRMRKSDSEDVSDNLAKGHSNKK 465
+ D T+ L S +R A I G L Y+YI ++R +S +++ +L+ G KK
Sbjct: 416 ILS-DATQPLESQNFSPVVRDAVITSNGVLPDKYKYIQKLR--ESRELAQSLSMG--TKK 470
Query: 466 KHNLLVSLSGHLFDQFL 482
+ +LV SG++ + L
Sbjct: 471 R--VLVLGSGYVSEPVL 485
|
|
| ZFIN|ZDB-GENE-061220-8 aass "aminoadipate-semialdehyde synthase" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 840 (300.8 bits), Expect = 1.3e-137, Sum P(2) = 1.3e-137
Identities = 192/476 (40%), Positives = 271/476 (56%)
Query: 8 VVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPSTKRIHHDVLYEDVGCQ 67
V+ I E VN WERRAPL P H + +G +++VQPS +R HD YE G
Sbjct: 32 VIAIRREDVNVWERRAPLAPRHVREITAAGH------KVLVQPSNRRAIHDRYYEKAGAV 85
Query: 68 ISEDLSECGLVLGIKQPKLEMILPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYEL 127
I ED+SE L++G+K+P E + P K YAFFSHT KAQ NM LLD +L + V L DYE
Sbjct: 86 IQEDISEASLIIGVKRPPEEKVYPRKTYAFFSHTIKAQEANMGLLDDLLKKEVRLIDYEK 145
Query: 128 IVGDNGRRLLAFGKFAGRAGMIDFLHGLGQRYLSLGYSTPFLSLGASYMYSSLAAAKAAV 187
+V NG R++AFG++AG AGMI+ LHGLG R+L+LG+ TPF+ +G ++ Y +++ A AV
Sbjct: 146 MVDPNGYRIVAFGQWAGVAGMINILHGLGLRFLALGHHTPFMHIGMAHNYRNVSQAIQAV 205
Query: 188 ISVGEEISTLGL-PSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFGKAKD 246
G EIS LGL P I PL F+FTG+GNVS GAQ+IF LP FVEP L E+
Sbjct: 206 RDCGYEIS-LGLMPKSIGPLTFVFTGTGNVSKGAQDIFNELPCEFVEPHELKEV------ 258
Query: 247 QHGGASKRIFQVYGCVVTSED-MVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAPYASVI 305
S + +VY V++ ++ D +D +Y HPE Y F +APY + +
Sbjct: 259 ---SLSGDLTKVYATVISRHHHLMRRSDGL--YDPLEYENHPELYTSHFRDTVAPYTTCL 313
Query: 306 VNCMYWEQRFPRLLSTQQLQDLVRK----------GCP-----LVGISDITCDIGGSLEF 350
+N +YW+ PRLL Q L+R GCP + I DI+ D GGS+EF
Sbjct: 314 INGIYWDPHTPRLLRRLDAQRLIRPVVTTSSSADYGCPALPHKFLAICDISADTGGSIEF 373
Query: 351 VNRTTSIDSSFFRYDPLSDSYHDDLEGNGLVCQAVDTLPTEFAKEASQHFGDILLEFIGS 410
+ T+I+ F YD HD +EGNG++ ++D LP + EA+++FGD L ++
Sbjct: 374 MTECTTIEKPFCMYDANQHIDHDSVEGNGILMCSIDNLPAQLPIEATEYFGDRLFPYVME 433
Query: 411 L-----SSTVDFTELPSHLRRACIAHGGALTTLYEYIPRMR-KSDSEDVSDNLAKG 460
+ + ++ + +R A I G LT +EYI ++R + +SE + L KG
Sbjct: 434 MLPSDATKPLEEEDFSPQVRDAVITSNGKLTPKFEYIQKLRERRESEQI---LKKG 486
|
|
| UNIPROTKB|Q9UDR5 AASS "Alpha-aminoadipic semialdehyde synthase, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 825 (295.5 bits), Expect = 3.9e-136, Sum P(3) = 3.9e-136
Identities = 200/496 (40%), Positives = 283/496 (57%)
Query: 8 VVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPSTKRIHHDVLYEDVGCQ 67
V+ + E VN WERRAPL P H + + G ++++QPS +R HD Y G
Sbjct: 25 VLAVRREDVNAWERRAPLAPKHIKGITNLGY------KVLIQPSNRRAIHDKDYVKAGGI 78
Query: 68 ISEDLSECGLVLGIKQPKLEMILPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYEL 127
+ ED+SE L+LG+K+P E ++ K YAFFSHT KAQ NM LLD+IL + + L DYE
Sbjct: 79 LQEDISEACLILGVKRPPEEKLMSRKTYAFFSHTIKAQEANMGLLDEILKQEIRLIDYEK 138
Query: 128 IVGDNGRRLLAFGKFAGRAGMIDFLHGLGQRYLSLGYSTPFLSLGASYMYSSLAAAKAAV 187
+V G R++AFG++AG AGMI+ LHG+G R L+LG+ TPF+ +G ++ Y + + A AV
Sbjct: 139 MVDHRGVRVVAFGQWAGVAGMINILHGMGLRLLALGHHTPFMHIGMAHNYRNSSQAVQAV 198
Query: 188 ISVGEEISTLGL-PSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFGKAKD 246
G EIS LGL P I PL F+FTG+GNVS GAQ IF LP +VEP L E+
Sbjct: 199 RDAGYEIS-LGLMPKSIGPLTFVFTGTGNVSKGAQAIFNELPCEYVEPHELKEV-----S 252
Query: 247 QHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAPYASVIV 306
Q G K VYG V++ + K +D A+Y HPE Y F+ IAPY + ++
Sbjct: 253 QTGDLRK----VYGTVLSRHHHLVRKTDAV-YDPAEYDKHPERYISRFNTDIAPYTTCLI 307
Query: 307 NCMYWEQRFPRLLSTQQLQDLVR---------KGCP-----LVGISDITCDIGGSLEFVN 352
N +YWEQ PRLL+ Q Q L+ +GCP LV I DI+ D GGS+EF+
Sbjct: 308 NGIYWEQNTPRLLTRQDAQSLLAPGKFSPAGVEGCPALPHKLVAICDISADTGGSIEFMT 367
Query: 353 RTTSIDSSFFRYDPLSDSYHDDLEGNGLVCQAVDTLPTEFAKEASQHFGDILLEFIGSLS 412
T+I+ F YD HD +EG+G++ ++D LP + EA++ FGD+L ++ +
Sbjct: 368 ECTTIEHPFCMYDADQHIIHDSVEGSGILMCSIDNLPAQLPIEATECFGDMLYPYVEEMI 427
Query: 413 STVDFTE-LPSH-----LRRACIAHGGALTTLYEYIPRMRKSDSEDVSDNLAKGHSNKKK 466
+ D T+ L S +R A I G L Y+YI +R +S + + +L+ G K
Sbjct: 428 LS-DATQPLESQNFSPVVRDAVITSNGTLPDKYKYIQTLR--ESRERAQSLSMGTRRK-- 482
Query: 467 HNLLVSLSGHLFDQFL 482
+LV SG++ + L
Sbjct: 483 --VLVLGSGYISEPVL 496
|
|
| UNIPROTKB|A8E657 AASS "Alpha-aminoadipic semialdehyde synthase, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 850 (304.3 bits), Expect = 8.4e-136, Sum P(2) = 8.4e-136
Identities = 213/542 (39%), Positives = 313/542 (57%)
Query: 8 VVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPSTKRIHHDVLYEDVGCQ 67
V+ + E VN WERRAPL P H + + G ++++QPS +R HD Y G
Sbjct: 25 VMALRREDVNAWERRAPLAPRHVKGITNLGY------KVLIQPSNRRAIHDKEYVKAGGI 78
Query: 68 ISEDLSECGLVLGIKQPKLEMILPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYEL 127
+ ED+SE L+LG+K+P E ++P K YAFFSHT KAQ NM LLD+IL + + L DYE
Sbjct: 79 LQEDISEACLILGVKRPPEEKLMPKKTYAFFSHTIKAQEANMGLLDEILKQEIRLIDYEK 138
Query: 128 IVGDNGRRLLAFGKFAGRAGMIDFLHGLGQRYLSLGYSTPFLSLGASYMYSSLAAAKAAV 187
+V G R++AFG++AG AG+I+ LHG+G R L+LG+ TPF+ +G ++ Y + A AV
Sbjct: 139 MVDHRGIRVVAFGQWAGVAGIINILHGMGLRLLALGHHTPFMHIGMAHNYRNSGQAVQAV 198
Query: 188 ISVGEEISTLGL-PSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFGKAKD 246
G EIS LGL P I PL F+FTG+GNVS GAQEIF LP +VEP L E+
Sbjct: 199 RDAGYEIS-LGLMPKSIGPLTFVFTGTGNVSKGAQEIFNELPCEYVEPHELKEV-----S 252
Query: 247 QHGGASKRIFQVYGCVVTSEDMVEHKDPTKG-FDKADYYAHPEHYNPVFHKKIAPYASVI 305
Q+G K VYG V++ + K T G +D +Y +PE Y F+ IAPY + +
Sbjct: 253 QNGDLRK----VYGTVLSRHHHLVRK--TDGVYDPVEYDKYPERYISRFNTDIAPYTTCL 306
Query: 306 VNCMYWEQRFPRLLSTQQLQDLVR---------KGCP-----LVGISDITCDIGGSLEFV 351
+N +YWEQ PRLL+ Q Q L+ +GCP LV I DI+ D GGS+EF+
Sbjct: 307 INGIYWEQNTPRLLTRQDAQSLLAPGKSPVAGVEGCPALPHKLVAICDISADTGGSIEFM 366
Query: 352 NRTTSIDSSFFRYDPLSDSYHDDLEGNGLVCQAVDTLPTEFAKEASQHFGDILLEFIGSL 411
T+I+ F YD HD +EG+G++ ++D LP + E++++FGD+L ++ +
Sbjct: 367 TECTTIERPFCMYDADQHIIHDSVEGSGILMCSIDNLPAQLPIESTEYFGDMLYPYVEEM 426
Query: 412 SSTVDFTE-LPSH-----LRRACIAHGGALTTLYEYIPRMRKSDSEDVSDNLAKGHSNKK 465
+ D T+ L S +R A IA G L+ Y+YI ++R ++ + + +L+ G KK
Sbjct: 427 ILS-DATQPLESQNFSPVVRDAVIASNGMLSNKYKYIQKLR--ENREHAQSLSMG--TKK 481
Query: 466 KHNLLVSLSGHLFD---QFLINEALDIIEAAGGSFHLVKCQVGQSTEALSFS--ELEVGA 520
K +LV SG++ + ++L+ + D IE GS +K Q+ Q + + + L VG
Sbjct: 482 K--VLVLGSGYVSEPVLEYLLRD--DSIEITVGSD--MKNQIEQLGKKYNINPVSLHVGK 535
Query: 521 DD 522
+
Sbjct: 536 QE 537
|
|
| MGI|MGI:1353573 Aass "aminoadipate-semialdehyde synthase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 834 (298.6 bits), Expect = 1.4e-135, Sum P(2) = 1.4e-135
Identities = 213/547 (38%), Positives = 307/547 (56%)
Query: 8 VVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPSTKRIHHDVLYEDVGCQ 67
V+ + E VN WERRAPL P H G K G ++++QPS +R HD Y G
Sbjct: 25 VMALRREDVNAWERRAPLAPKHI-----KGITKLGY-KVLIQPSNRRAIHDKEYVRAGGI 78
Query: 68 ISEDLSECGLVLGIKQPKLEMILPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYEL 127
+ ED++E L+LG+K+P E ++ K YAFFSHT KAQ NM LLD++L + + L DYE
Sbjct: 79 LQEDITEACLILGVKRPPEEKLMSKKTYAFFSHTIKAQEANMNLLDEVLKQEIRLIDYEK 138
Query: 128 IVGDNGRRLLAFGKFAGRAGMIDFLHGLGQRYLSLGYSTPFLSLGASYMYSSLAAAKAAV 187
+V G R++AFG++AG AGMI+ LHG+G R L+LG+ TPF+ LG ++ Y + + A AV
Sbjct: 139 MVDHRGSRIVAFGQWAGVAGMINILHGMGLRLLALGHHTPFMHLGMAHNYRNSSQAVQAV 198
Query: 188 ISVGEEISTLGL-PSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFGKAKD 246
G EIS LGL P I PL F+FTG+GNVS GAQE+F LP +VEP L E+ K D
Sbjct: 199 RDAGYEIS-LGLMPKSIGPLTFVFTGTGNVSKGAQEVFNELPCEYVEPHELREV-SKTGD 256
Query: 247 QHGGASKRIFQVYGCVVTSEDMVEHKDPTKG-FDKADYYAHPEHYNPVFHKKIAPYASVI 305
+ +VYG V++ + K T G +D +Y +PE Y F+ IAPY + +
Sbjct: 257 --------LRKVYGTVLSRHHHLVRK--TDGVYDPVEYEKYPERYTSRFNTDIAPYTTCL 306
Query: 306 VNCMYWEQRFPRLLSTQQLQDL---VR------KGCP-----LVGISDITCDIGGSLEFV 351
+N +YWEQ PRLL+ Q Q L V+ +GCP LV I DI+ D GGS++F+
Sbjct: 307 INGIYWEQNTPRLLTRQDAQSLLVPVKSSVVPVEGCPELPHKLVAICDISADTGGSIDFM 366
Query: 352 NRTTSIDSSFFRYDPLSDSYHDDLEGNGLVCQAVDTLPTEFAKEASQHFGDILLEFIGSL 411
T+I+ F YD HD +EG+G++ ++D LP + EA+++FGD+L ++ +
Sbjct: 367 TECTTIERPFCMYDADQQIIHDSVEGSGILMCSIDNLPAQLPIEATEYFGDMLYPYVEEM 426
Query: 412 -----SSTVDFTELPSHLRRACIAHGGALTTLYEYIPRMRKSDSEDVSDNLAKGHSNKKK 466
S ++ +R A I G LT Y+YI ++R+S E + L+ S KKK
Sbjct: 427 LLSDASQPLESQNFSPVVRDAVITSNGLLTDKYKYIQKLRES-RERIQF-LSM--STKKK 482
Query: 467 HNLLVSLSGHLFDQFLINEALDI-IEAAGGSFHLVKCQVGQSTEALSFSELEVGADDSAV 525
+LV SG++ L + D IE GS + Q ++ L VG + A
Sbjct: 483 --VLVLGSGYVSGPVLEYLSRDNNIEITLGSDMTNQMQQLSKKYNINPVSLTVGKQE-AK 539
Query: 526 LDQIIDS 532
L +++S
Sbjct: 540 LQSLVES 546
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9SMZ4 | AASS_ARATH | 1, ., 5, ., 1, ., 9 | 0.7068 | 0.9943 | 0.9840 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1053 | |||
| PLN02819 | 1042 | PLN02819, PLN02819, lysine-ketoglutarate reductase | 0.0 | |
| cd12189 | 433 | cd12189, LKR_SDH_like, bifunctional lysine ketoglu | 0.0 | |
| cd05199 | 319 | cd05199, SDH_like, Saccharopine Dehydrogenase like | 2e-76 | |
| pfam03435 | 380 | pfam03435, Saccharop_dh, Saccharopine dehydrogenas | 2e-62 | |
| COG1748 | 389 | COG1748, LYS9, Saccharopine dehydrogenase and rela | 1e-49 | |
| cd05199 | 319 | cd05199, SDH_like, Saccharopine Dehydrogenase like | 2e-31 | |
| cd12144 | 114 | cd12144, SDH_N_domain, Saccharopine dehydrogenase | 3e-30 | |
| pfam04455 | 102 | pfam04455, Saccharop_dh_N, LOR/SDH bifunctional en | 5e-28 | |
| pfam01262 | 150 | pfam01262, AlaDh_PNT_C, Alanine dehydrogenase/PNT, | 2e-27 | |
| pfam05222 | 135 | pfam05222, AlaDh_PNT_N, Alanine dehydrogenase/PNT, | 2e-23 | |
| smart01003 | 133 | smart01003, AlaDh_PNT_N, Alanine dehydrogenase/PNT | 9e-21 | |
| cd12188 | 351 | cd12188, SDH, Saccharopine Dehydrogenase NAD-bindi | 7e-18 | |
| smart01002 | 149 | smart01002, AlaDh_PNT_C, Alanine dehydrogenase/PNT | 1e-15 | |
| cd01620 | 317 | cd01620, Ala_dh_like, Alanine dehydrogenase and re | 3e-10 | |
| pfam03435 | 380 | pfam03435, Saccharop_dh, Saccharopine dehydrogenas | 3e-09 | |
| COG1915 | 415 | COG1915, COG1915, Uncharacterized conserved protei | 4e-07 | |
| cd12181 | 295 | cd12181, ceo_syn, N(5)-(carboxyethyl)ornithine syn | 5e-07 | |
| TIGR00300 | 407 | TIGR00300, TIGR00300, TIGR00300 family protein | 4e-06 | |
| cd12188 | 351 | cd12188, SDH, Saccharopine Dehydrogenase NAD-bindi | 0.001 | |
| COG1748 | 389 | COG1748, LYS9, Saccharopine dehydrogenase and rela | 0.002 |
| >gnl|CDD|215439 PLN02819, PLN02819, lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Score = 1769 bits (4583), Expect = 0.0
Identities = 750/1053 (71%), Positives = 878/1053 (83%), Gaps = 16/1053 (1%)
Query: 2 PMLGNGVVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPSTKRIHHDVLY 61
LGNGVVGIL+E+VNKWERRAPLTPSHCARLLHSG+D V+RI+VQPS+KRIHHD Y
Sbjct: 1 MKLGNGVVGILAETVNKWERRAPLTPSHCARLLHSGKD-RTVSRIIVQPSSKRIHHDAQY 59
Query: 62 EDVGCQISEDLSECGLVLGIKQPKLEMILPDKAYAFFSHTHKAQRENMPLLDKILAERVS 121
EDVGC+ISEDLS+CGL+LG+KQPKLEM+LPD+AYAFFSHTHKAQ ENMPLLDKIL ERVS
Sbjct: 60 EDVGCEISEDLSDCGLILGVKQPKLEMLLPDRAYAFFSHTHKAQPENMPLLDKILEERVS 119
Query: 122 LYDYELIVGDNGRRLLAFGKFAGRAGMIDFLHGLGQRYLSLGYSTPFLSLGASYMYSSLA 181
L+DYELIVGD+G+RL+AFGK+AGRAGMIDF GLGQR LSLGYSTPFLSLG+SYMYSSLA
Sbjct: 120 LFDYELIVGDHGKRLVAFGKYAGRAGMIDFFRGLGQRLLSLGYSTPFLSLGSSYMYSSLA 179
Query: 182 AAKAAVISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELF 241
AAKAAVISVGEEI++ GLP GICPLVF+FTGSGNVS GAQEIFKLLPHTFVEPS+LPEL
Sbjct: 180 AAKAAVISVGEEIASSGLPLGICPLVFVFTGSGNVSQGAQEIFKLLPHTFVEPSKLPEL- 238
Query: 242 GKAKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAPY 301
K Q+ ++KR++QVYGCVVTS+DMVEHKDP+K FDKADYYAHPEHYNPVFH+KIAPY
Sbjct: 239 -KGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKADYYAHPEHYNPVFHEKIAPY 297
Query: 302 ASVIVNCMYWEQRFPRLLSTQQLQDLVRK-GCPLVGISDITCDIGGSLEFVNRTTSIDSS 360
ASVIVNCMYWE+RFPRLL+T+QLQDL RK GCPLVG+ DITCDIGGS+EF+N+TTSI+
Sbjct: 298 ASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDITCDIGGSIEFLNKTTSIEKP 357
Query: 361 FFRYDPLSDSYHDDLEGNGLVCQAVDTLPTEFAKEASQHFGDILLEFIGSLSSTVDFTEL 420
FFRY+P ++SYHDD++G+G++C AVD LPTEFAKEASQHFG+IL F+GSL+S + EL
Sbjct: 358 FFRYNPSNNSYHDDMDGDGILCMAVDILPTEFAKEASQHFGNILSPFVGSLASMKELAEL 417
Query: 421 PSHLRRACIAHGGALTTLYEYIPRMRKSDSEDVSDNLAKGHSNKKKHNLLVSLSGHLFDQ 480
PSHLRRACIAH G+LT L+EYIPRMR S++E D + S++ N+LVSLSGHLFD+
Sbjct: 418 PSHLRRACIAHRGSLTPLFEYIPRMRNSNAELAQDTV----SSQSTFNILVSLSGHLFDK 473
Query: 481 FLINEALDIIEAAGGSFHLVKCQVGQSTEALSFSELEVGADDSAVLDQIIDSLTSLANAS 540
FLINEALD+IEAAGGSFHL KCQVGQS +A S+SELEVGADD VLDQIIDSLT LAN +
Sbjct: 474 FLINEALDVIEAAGGSFHLAKCQVGQSADAESYSELEVGADDKEVLDQIIDSLTRLANPN 533
Query: 541 ENNRDQISGINRISLRIGKVQETATQ--KGPGTKGTSSVLIIGAGRVCRPAAELLASFGS 598
E+ N+I L+IGKVQ+ K TK + +VLI+GAGRVCRPAAE LAS +
Sbjct: 534 EDYISPAREANKIFLKIGKVQQENECNEKAEVTKKSQNVLILGAGRVCRPAAEYLASVKT 593
Query: 599 PSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLCKCIS 658
+ D E D+ V+VASLYLKDA+E +EGI NAEAVQLDVSD +SL K +S
Sbjct: 594 ------ISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647
Query: 659 QVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGEMGLDP 718
QV++VISLLPASCH +VA ACIE KKHLVTASY+ + MS LD KAK AGITIL EMGLDP
Sbjct: 648 QVDVVISLLPASCHAVVAKACIELKKHLVTASYVSEEMSALDSKAKEAGITILCEMGLDP 707
Query: 719 GIDHMMAMKMINHAHVRKGKIKSFTSYCGGLPSPAAANNPLAYKFSWSPAGAIRAGRNPA 778
GIDHMMAMKMI+ AH R GK+KSFTSYCGGLPSP AANNPLAYKFSW+PAGAI+AG+NPA
Sbjct: 708 GIDHMMAMKMIDDAHERGGKVKSFTSYCGGLPSPEAANNPLAYKFSWNPAGAIKAGQNPA 767
Query: 779 IYLFNGKTVQVDGDSLYDSAEKFRIADLPAFALECLPNRNSLVYGDIYGIGKEASTIFRG 838
+Y NG+ + VDG++L+ SA +FR+ +LPAFALECLPNR+SLVYG++YGI KEA+TIFRG
Sbjct: 768 VYKSNGQIIHVDGENLFASAVRFRLPNLPAFALECLPNRDSLVYGELYGIEKEAATIFRG 827
Query: 839 TLRYEGFGEIMGTLGRIGFFSAETHPVLKQGSGPTFRMFLCEILKMDSQKMGEAPLGEKE 898
TLRYEGF IM TL ++G F +E HP+L G T+ L +L D GE+E
Sbjct: 828 TLRYEGFSMIMATLSKLGLFDSENHPLLSTGKRTTYGALLDALLLQDGHNENGPLAGEEE 887
Query: 899 ITERILSLGHCKERETASKAAKTIIFLGLHEQTEIPASCESPFSVTCLLMEEKLAYSSTE 958
I++R+ LGH K RETA+KAAKTI+FLGL E+TE+P SC+S F VTC MEEKLAYS E
Sbjct: 888 ISKRLAKLGHSKNRETAAKAAKTIVFLGLDEETEVPKSCKSIFDVTCYRMEEKLAYSGNE 947
Query: 959 EDMVLLHHEVEVEFPDGQPSENNRATLLEFGKMKNGKMISAMALTVGIPAGIAAMLLLVN 1018
+DMVLLHHEVEVEFPD + E + ATLLEFG++KNG+ +AMA TVGIPA I A+LLL
Sbjct: 948 QDMVLLHHEVEVEFPDSKRIEKHSATLLEFGEIKNGRTTTAMAKTVGIPAAIGALLLLEG 1007
Query: 1019 KIKTRGVLRPIEPEVYVPALDMLQAYGIKLVEK 1051
KIKTRGVLRP+EPEVYVPAL++LQAYGIKL+EK
Sbjct: 1008 KIKTRGVLRPLEPEVYVPALEILQAYGIKLMEK 1040
|
Length = 1042 |
| >gnl|CDD|240665 cd12189, LKR_SDH_like, bifunctional lysine ketoglutarate reductase /saccharopine dehydrogenase enzyme | Back alignment and domain information |
|---|
Score = 675 bits (1745), Expect = 0.0
Identities = 244/447 (54%), Positives = 306/447 (68%), Gaps = 22/447 (4%)
Query: 8 VVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPSTKRIHHDVLYEDVGCQ 67
V+GI E N WERRAPLTPSH L+ K +++VQPS +R D YE G
Sbjct: 1 VIGIRREDKNIWERRAPLTPSHVRELV-----KKPGVKVLVQPSNRRAFPDQEYEAAGAI 55
Query: 68 ISEDLSECGLVLGIKQPKLEMILPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYEL 127
I EDLS+ L+LG+K+P ++ +LPDK YAFFSHT KAQ NMPLLD IL + + L DYEL
Sbjct: 56 IQEDLSDADLILGVKEPPIDKLLPDKTYAFFSHTIKAQPYNMPLLDAILEKNIRLIDYEL 115
Query: 128 IVGDNGRRLLAFGKFAGRAGMIDFLHGLGQRYLSLGYSTPFLSLGASYMYSSLAAAKAAV 187
IV ++G+RL+AFG FAG AGMID LHGLG R L+LGYSTPFL +G +Y Y SL AK AV
Sbjct: 116 IVDESGKRLVAFGWFAGVAGMIDILHGLGLRLLALGYSTPFLHIGRAYNYPSLEEAKQAV 175
Query: 188 ISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFGKAKDQ 247
G EI+ GLP + PLVF+FTGSGNVS GAQEIF+ LPH +VEPS LPEL D+
Sbjct: 176 RDAGYEIALGGLPKSLGPLVFVFTGSGNVSQGAQEIFEELPHEYVEPSDLPELAKSGADR 235
Query: 248 HGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAPYASVIVN 307
+ VYGCVVT ED +E KD FD+ADYYA+PE Y VFH+KIAPY SV++N
Sbjct: 236 NK--------VYGCVVTPEDYLERKDG-GPFDRADYYANPELYESVFHEKIAPYLSVLIN 286
Query: 308 CMYWEQRFPRLLSTQQLQDLVRK---GCPLVGISDITCDIGGSLEFVNRTTSIDSSFFRY 364
+YW+ RFPRLL+ +QLQ L+R L+ I+DI+CDIGGS+EF+ + T+IDS F+ Y
Sbjct: 287 GIYWDPRFPRLLTNEQLQALLRPPAGPHRLLAIADISCDIGGSIEFLTKATTIDSPFYVY 346
Query: 365 DPLSDSYHDDLEGNGLVCQAVDTLPTEFAKEASQHFGDILLEFIGSL-----SSTVDFTE 419
DP +D HD + G+G++ +VD LP E +EAS+HFGD LL ++ L S ++ +E
Sbjct: 347 DPDTDKIHDSVSGDGILVMSVDNLPAELPREASEHFGDALLPYVPDLAKSDASKPLEESE 406
Query: 420 LPSHLRRACIAHGGALTTLYEYIPRMR 446
LP LRRA IA G LT YEYI +R
Sbjct: 407 LPPVLRRATIASNGKLTPKYEYIQELR 433
|
Bifunctional lysine ketoglutarate reductase /saccharopine dehydrogenase protein is a pair of enzymes linked on a single polypeptide chain that catalyze the initial, consecutive steps of lysine degradation. These proteins are related to the 2-domain saccharopine dehydrogenases. Along with formate dehydrogenase and similar enzymes, SDH consists paired domains resembling Rossmann folds in which the NAD-binding domain is inserted within the linear sequence of the catalytic domain. In this bifunctional enzyme, the LKR domain is N-terminal of the SDH domain. These proteins have a close match to the active site motif of SDHs, and an NAD-binding site motif that is a partial match to that found in SDH and other FDH-related proteins. Length = 433 |
| >gnl|CDD|240623 cd05199, SDH_like, Saccharopine Dehydrogenase like proteins | Back alignment and domain information |
|---|
Score = 254 bits (650), Expect = 2e-76
Identities = 76/232 (32%), Positives = 108/232 (46%), Gaps = 22/232 (9%)
Query: 8 VVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPSTKRIHHDVLYEDVGCQ 67
+GI+ E +RR PLTP C L K I VQPS R D Y G +
Sbjct: 1 KIGIIREGKTPPDRRVPLTPEQCKELQA----KYPGVEIFVQPSPVRCFKDEEYRAAGIE 56
Query: 68 ISEDLSECGLVLGIKQPKLEMILPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYEL 127
+ EDLS+C ++LG+K+ +E ++P+K Y FFSHT K Q N LL IL + ++L DYE+
Sbjct: 57 VVEDLSDCDILLGVKEVPIEQLIPNKTYFFFSHTIKKQPYNRKLLQTILEKNITLIDYEV 116
Query: 128 IVGDNGRRLLAFGKFAGRAGMIDFLHGLGQRYLSLGYSTPFLSLGASYMYSSLAAAKAAV 187
+V + G+R++AFG++AG G + L G++
Sbjct: 117 LVDEQGKRVIAFGRYAGIVGAYNGLRAYGKKTGLFDLKRAHECSDL-------------- 162
Query: 188 ISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPE 239
EE+ G+ P + TGSG V GA E+ K L V P
Sbjct: 163 ----EELIAELKKVGLPPPKIVITGSGRVGSGAAEVLKALGIKEVSPEDFLT 210
|
Saccharopine Dehydrogenase (SDH) and related proteins, including bifunctional lysine ketoglutarate reductase/SDH enzymes and N(5)-(carboxyethyl)ornithine synthases. SDH catalyzes the final step in the reversible NAD-dependent oxidative deamination of saccharopine to alpha-ketoglutarate and lysine, in the alpha-aminoadipate pathway of L-lysine biosynthesis. SDH is structurally related to formate dehydrogenase and similar enzymes, having a 2-domain structure in which a Rossmann-fold NAD(P)-binding domain is inserted within the linear sequence of a catalytic domain of related structure. Bifunctional lysine ketoglutarate reductase/SDH protein is a pair of enzymes linked on a single polypeptide chain that catalyze the initial, consecutive steps of lysine degradation. These proteins are related to the 2-domain saccharopine dehydrogenases. Length = 319 |
| >gnl|CDD|217556 pfam03435, Saccharop_dh, Saccharopine dehydrogenase | Back alignment and domain information |
|---|
Score = 216 bits (553), Expect = 2e-62
Identities = 86/292 (29%), Positives = 130/292 (44%), Gaps = 25/292 (8%)
Query: 577 VLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIE- 635
VLIIGAG V + A LLA G D+ + VA L+ A+ +
Sbjct: 1 VLIIGAGGVGQGVAPLLARHG-------------------DLEITVADRSLEKAQALAAP 41
Query: 636 -GIPNAEAVQLDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDD 694
A+ +D ++++L + + ++VI+L P + V ACIE H V SY+ +
Sbjct: 42 KLGLRFIAIAVDADNYEALVALLKEGDLVINLAPPFLSLTVLKACIETGVHYVDTSYLRE 101
Query: 695 SMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMINHAHVRKGKIKSFTSYCGGLPSPAA 754
+ L EKAK AG+T + G DPG+ + A ++ K+ S +CGG P P
Sbjct: 102 AQLALHEKAKDAGVTAVLGCGFDPGLVSLFAKYALDDLADELAKVLSVKIHCGGRPEP-- 159
Query: 755 ANNPLAYKFSWSPAGAIRAGRNPAIYLFNGKTVQVDGDSLYDSAEKFRIADLPAFALECL 814
+NPL + +WSP G + NPA Y NGK V+V S + P +A E
Sbjct: 160 KDNPLEFANTWSPEGLLEELTNPARYWENGKWVEVGWGSHERTIPFPYGI-GPGYAYEIY 218
Query: 815 PNRNSLVYGDIYGIGKEASTIFRGTLRYEGFGEIMGTLGRIGFFSAETHPVL 866
NR + + EA + GT+R G+ ++ LG +G H
Sbjct: 219 LNRPGTLTRVRSWLP-EADGVLFGTIRIPGYLTVIKLLGDLGLLRPTVHYAY 269
|
This family comprised of three structural domains that can not be separated in the linear sequence. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase. The saccharopine dehydrogenase can also function as a saccharopine reductase. Length = 380 |
| >gnl|CDD|224662 COG1748, LYS9, Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 180 bits (459), Expect = 1e-49
Identities = 84/296 (28%), Positives = 121/296 (40%), Gaps = 30/296 (10%)
Query: 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEV 633
+L+IGAG V A LA G D V +A + +
Sbjct: 1 MMKILVIGAGGVGSVVAHKLAQNG-------------------DGEVTIADRSKEKCARI 41
Query: 634 IE-GIPNAEAVQLDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYI 692
E EA+Q+D +D +L I ++VI+ P + + ACI+ V SY
Sbjct: 42 AELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFVDLTILKACIKTGVDYVDTSYY 101
Query: 693 DDSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMINHAHVRKGKIKSFTSYCGGLPSP 752
++ KLDE+AK AGIT + G DPGI +++A +I+S Y GGL
Sbjct: 102 EEPPWKLDEEAKKAGITAVLGCGFDPGITNVLAAYAAKELF---DEIESIDIYVGGLGEH 158
Query: 753 AAANNPLAYKFSWSPAGAIRAGRNPAIYLFNGKTVQVDGDSLYDSAEKFRIADLPAFALE 812
+NPL Y +WSP +R PA Y NGK V+V D L + + +
Sbjct: 159 --GDNPLGYATTWSPEINLREYTRPARYWENGKWVEV--DPLEEREVFEFP--VIGYGDV 212
Query: 813 CLPNRNSLVYGDIYGIGKEASTIFRGTLRYEGFGEIMGTLGRIGFFSAETHPVLKQ 868
+ L I T F T RY G E++ L +G S E V ++
Sbjct: 213 YAFYHDELRSLVKT-IPGVVRTRFEMTFRYPGHLEVIKALRDLGLLSREPVKVQQE 267
|
Length = 389 |
| >gnl|CDD|240623 cd05199, SDH_like, Saccharopine Dehydrogenase like proteins | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 2e-31
Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 8/122 (6%)
Query: 295 HKKIAP-----YASVIVNCMYWEQRFPRLLSTQQLQDLVRKGCPLVGISDITCDIGGSLE 349
K+++P A +++N YW++R PRL + +DL + + I+D+TCDI GS+
Sbjct: 200 IKEVSPEDFLTVADILINGHYWDKRAPRLFT---KEDLKKPDFKIRVIADVTCDIHGSIP 256
Query: 350 FVNRTTSIDSSFFRYDPLSDSYHDDLEGNGLVCQAVDTLPTEFAKEASQHFGDILLEFIG 409
R ++I + YDP ++ + + AVD LP E ++AS+ FG+ L++ +
Sbjct: 257 STLRASTIADPVYDYDPTTNKEVAFSSPDSITVMAVDNLPCELPRDASEDFGEQLIKSVL 316
Query: 410 SL 411
Sbjct: 317 PE 318
|
Saccharopine Dehydrogenase (SDH) and related proteins, including bifunctional lysine ketoglutarate reductase/SDH enzymes and N(5)-(carboxyethyl)ornithine synthases. SDH catalyzes the final step in the reversible NAD-dependent oxidative deamination of saccharopine to alpha-ketoglutarate and lysine, in the alpha-aminoadipate pathway of L-lysine biosynthesis. SDH is structurally related to formate dehydrogenase and similar enzymes, having a 2-domain structure in which a Rossmann-fold NAD(P)-binding domain is inserted within the linear sequence of a catalytic domain of related structure. Bifunctional lysine ketoglutarate reductase/SDH protein is a pair of enzymes linked on a single polypeptide chain that catalyze the initial, consecutive steps of lysine degradation. These proteins are related to the 2-domain saccharopine dehydrogenases. Length = 319 |
| >gnl|CDD|213387 cd12144, SDH_N_domain, Saccharopine dehydrogenase N-terminal domain | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 3e-30
Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 470 LVSLSGHLFDQFLINEALDIIEAAGGSFHLVKCQVGQSTEALSFSELEVGADDSAVLDQI 529
V L GHL D L+N+ LD+IE AGG F +++C VG+S + S++ LEV ADD LD+I
Sbjct: 2 EVELEGHLIDSGLLNKVLDLIEDAGGDFEILECDVGKSKDDPSYARLEVSADDEEHLDRI 61
Query: 530 IDSLTSLANASENNRDQISGINRISLRIGKVQETATQKGPGTKGTSSVLIIGAGRVCRP 588
+D LTSL ++ D + V V + G V
Sbjct: 62 LDELTSLGAVLVDSADAE--LEPAPKD--GVLPDGFYSTTNHPT--QVRLDGEWIVVEN 114
|
SDH N-terminal domain is named due to its appearance at the N-terminal of SDH in eukaryotes, but can be found C-terminal of the SDH-like domain in other enzymes, such as the bifunctional lysine ketoglutarate reductase/saccharopine dehydrogenase enzyme. SDH catalyzes the final step in the reversible NAD-dependent oxidative deamination of saccharopine to alpha-ketoglutarate and lysine, in the alpha-aminoadipate pathway of L-lysine biosynthesis. SHD is structurally related to formate dehydrogenase and similar enzymes, having a 2-domain structure in which a Rossmann-fold NAD(P)-binding domain is inserted within the linear sequence of a catalytic domain of a related structure. Length = 114 |
| >gnl|CDD|190997 pfam04455, Saccharop_dh_N, LOR/SDH bifunctional enzyme conserved region | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 5e-28
Identities = 32/93 (34%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 470 LVSLSGHLFDQFLINEALDIIEAAGGSFHLVKCQVGQSTEALSFSELEVGADDSAVLDQI 529
V L GHL D ++N ALDII GGSF +++ VG+ + S++ L V ADD LD+I
Sbjct: 4 EVELEGHLIDSGILNRALDIIMDLGGSFEVLEFDVGKRKDDTSYARLLVSADDEEHLDRI 63
Query: 530 IDSLTSLANASENNRDQISGINRISLRIGKVQE 562
+D L L D V
Sbjct: 64 LDELIRLGAVPPEIED----AELEPAPKDGVAP 92
|
Lysine-oxoglutarate reductase/Saccharopine dehydrogenase (LOR/SDH) is a bifunctional enzyme. This conserved region is commonly found immediately N-terminal to Saccharop_dh (pfam03435) in eukaryotes. Length = 102 |
| >gnl|CDD|216396 pfam01262, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-terminal domain | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 2e-27
Identities = 32/176 (18%), Positives = 48/176 (27%), Gaps = 35/176 (19%)
Query: 186 AVISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFGKAK 245
G LG G+ P + G G V LGA K L PE +
Sbjct: 1 LEKYGGGFGMLLGGAGGVPPAKVVVIGGGVVGLGAAATAKGLGAPVTILDVRPERLEQLD 60
Query: 246 DQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAPYASVI 305
+ IA VI
Sbjct: 61 SLFA---------EFVETD----------------------IFSNCEYLAEAIAEADLVI 89
Query: 306 VNCMYWEQRFPRLLSTQQLQDLVRKGCPLVGISDITCDIGGSLEFVNRTTSIDSSF 361
+ R P+L++ + ++ + P I D+ D GG +E TT D ++
Sbjct: 90 GTVLIPGARAPKLVTREMVKTMK----PGSVIVDVAIDQGGCIETTRPTTHSDPTY 141
|
This family now also contains the lysine 2-oxoglutarate reductases. Length = 150 |
| >gnl|CDD|218508 pfam05222, AlaDh_PNT_N, Alanine dehydrogenase/PNT, N-terminal domain | Back alignment and domain information |
|---|
Score = 96.7 bits (242), Expect = 2e-23
Identities = 36/146 (24%), Positives = 59/146 (40%), Gaps = 20/146 (13%)
Query: 10 GILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPS--TKRIHHDVLYEDVGCQ 67
G+ E ERR LTP+ +L+ G ++V+ D YE G +
Sbjct: 1 GVPKEIKP-GERRVALTPAGVKKLVKLG------HEVLVESGAGLGAGFSDEAYEAAGAE 53
Query: 68 I----SEDLSECGLVLGIKQPK---LEMILPDKAYAFFSHTHKAQRENMPLLDKILAERV 120
I +E ++ L+L +K+P L ++ P + F H N LL+ + A+ V
Sbjct: 54 IVDTAAEVWAQADLILKVKEPSPEELALLRPGQTLITFLHPAA----NPELLEALAAKGV 109
Query: 121 SLYDYELIVGDNGRRLLAFGKFAGRA 146
+ YE + + L A A A
Sbjct: 110 TAIAYETVPRIRAQSLDALSSMANIA 135
|
This family now also contains the lysine 2-oxoglutarate reductases. Length = 135 |
| >gnl|CDD|214967 smart01003, AlaDh_PNT_N, Alanine dehydrogenase/PNT, N-terminal domain | Back alignment and domain information |
|---|
Score = 89.0 bits (222), Expect = 9e-21
Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 16/142 (11%)
Query: 10 GILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPS--TKRIHHDVLYEDVGCQ 67
G+ E ERR LTP+ +L+ G ++V+ D YE G +
Sbjct: 1 GVPKEIKP-GERRVALTPAGVKKLVKLG------HEVLVESGAGEGAGFSDEAYEAAGAE 53
Query: 68 ISED---LSECGLVLGIKQPKL-EMILPDKAYAFFSHTHKAQRENMPLLDKILAERVSLY 123
I + ++ ++L +K+P E+ L + F + H A N LL+ + A+ V+
Sbjct: 54 IVDTAEVWADADIILKVKEPSPEELALLREGQILFGYLHPAA--NPELLEALAAKGVTAI 111
Query: 124 DYELIVGD-NGRRLLAFGKFAG 144
YE + + L A A
Sbjct: 112 AYETVPRISRAQSLDALSSMAE 133
|
Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Length = 133 |
| >gnl|CDD|240664 cd12188, SDH, Saccharopine Dehydrogenase NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 7e-18
Identities = 45/140 (32%), Positives = 71/140 (50%), Gaps = 23/140 (16%)
Query: 20 ERRAPLTPSHCARLLHSGRDKSGVARIVVQPSTKRIHHDVLYEDVGCQISEDLS-----E 74
ERR LTP+ +LL +G ++ V+ S +RI D YE VGC++ S +
Sbjct: 13 ERRTALTPTTAKKLLDAG------FKVTVERSPQRIFPDEEYEAVGCELVPAGSWVNAPK 66
Query: 75 CGLVLGIKQPKLEMILPDK------AYAFFSHTHKAQRENMPLLDKILAERVSLYDYELI 128
++LG+K+ LP+ + +F+H +K Q +L + +L D E +
Sbjct: 67 DAIILGLKE------LPEDTFPLPHRHIYFAHAYKGQAGWKDVLSRFARGGGTLLDLEYL 120
Query: 129 VGDNGRRLLAFGKFAGRAGM 148
V D+GRR+ AFG +AG AG
Sbjct: 121 VDDDGRRVAAFGYWAGFAGA 140
|
Saccharopine Dehydrogenase (SDH) catalyzes the final step in the reversible NAD-dependent oxidative deamination of saccharopine to alpha-ketoglutarate and lysine, in the alpha-aminoadipate pathway of L-lysine biosynthesis. SHD is structurally related to formate dehydrogenase and similar enzymes, having a 2-domain structure in which a Rossmann-fold NAD(P)-binding domain is inserted within the linear sequence of a catalytic domain of related structure. Length = 351 |
| >gnl|CDD|214966 smart01002, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-terminal domain | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 1e-15
Identities = 32/185 (17%), Positives = 63/185 (34%), Gaps = 47/185 (25%)
Query: 186 AVISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPH----TFVEPSRLPELF 241
G L G+ P + G+G V LGA K L V P+RL
Sbjct: 1 LEKFGGGFGMLLTGAGGVPPAKVVVIGAGVVGLGAAATAKGLGAEVTVLDVRPARL---- 56
Query: 242 GKAKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAPY 301
+++ + G T+ + ++
Sbjct: 57 -----------RQLESLLGARFTTL----------------------YSQAELLEEAVKE 83
Query: 302 ASVIVNCMYWE-QRFPRLLSTQQLQDLVRKGCPLVGISDITCDIGGSLEFVNRTTSIDSS 360
A +++ + + P+L++ + ++ + + G +V D+ D GG +E +R T+ D
Sbjct: 84 ADLVIGAVLIPGAKAPKLVTREMVKSM-KPGSVIV---DVAADQGGCIET-SRPTTHDDP 138
Query: 361 FFRYD 365
+ D
Sbjct: 139 TYVVD 143
|
Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Length = 149 |
| >gnl|CDD|240621 cd01620, Ala_dh_like, Alanine dehydrogenase and related dehydrogenases | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 3e-10
Identities = 68/396 (17%), Positives = 131/396 (33%), Gaps = 101/396 (25%)
Query: 20 ERRAPLTPSHCARLLHSGRDKSGVARIVVQ--PSTKRIHHDVLYEDVGCQI----SEDLS 73
E R LTPS +L+ +G ++ ++ + D Y G QI S++
Sbjct: 12 EFRVALTPSFVKKLVANG------FKVYIETGAGSGAGFSDEDYLQAGAQIVPAASKEAY 65
Query: 74 ECGLVLGIKQPKLEMILP-DKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYELIVGDN 132
+++ +K+P+ K + H A +++ ++ ++++ Y E + D
Sbjct: 66 SADIIVKLKEPEFAEYDLIKKGQLLVTFLHAATNR--GVVEVLMRKKLTAYALEDLENDF 123
Query: 133 GRRLLAFGKFAGRAGMIDFLHGLGQRYLSLGYSTPFLSLGASYMYSSLAAAKAAVISVGE 192
RL AG AG+ G L+ A + +
Sbjct: 124 RPRLAPNSNIAGYAGVQL------------GAY--ELARIQGGRMGGAGGVPPAKVLI-- 167
Query: 193 EISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFGKAKDQHGGAS 252
G+G V LGA +I A
Sbjct: 168 ------------------IGAGVVGLGAAKI---------------------------AK 182
Query: 253 KRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAPYASVIVNCMYWE 312
K G V D+ K+ + + + +K +++N + +
Sbjct: 183 K-----LGANVLVYDI---KEEKLKGVETLGGSRLRYSQKEELEKELKQTDILINAILVD 234
Query: 313 QRFPRLLSTQQLQDLVRKGCPLVGISDITCDIGGSLEFVNRTTSIDSSFFRYDPLSDSYH 372
+L ++L +++G +V D+ D GG+ E TT ++
Sbjct: 235 GPRAPILIMEELVGPMKRGAVIV---DLAADQGGNDETSIPTTEGVPTY----------- 280
Query: 373 DDLEGNGLVCQAVDTLPTEFAKEASQHFGDILLEFI 408
E +G+V VD +P+ +EAS+ LL ++
Sbjct: 281 ---EVDGVVIYGVDNMPSLVPREASELLSKNLLPYL 313
|
Alanine dehydrogenase/Transhydrogenase, such as the hexameric L-alanine dehydrogenase of Phormidium lapideum, contain 2 Rossmann fold-like domains linked by an alpha helical region. Related proteins include Saccharopine Dehydrogenase (SDH), bifunctional lysine ketoglutarate reductase /saccharopine dehydrogenase enzyme, N(5)-(carboxyethyl)ornithine synthase, and Rubrum transdehydrogenase. Alanine dehydrogenase (L-AlaDH) catalyzes the NAD-dependent conversion of pyrucate to L-alanine via reductive amination. Transhydrogenases found in bacterial and inner mitochondrial membranes link NAD(P)(H)-dependent redox reactions to proton translocation. The energy of the proton electrochemical gradient (delta-p), generated by the respiratory electron transport chain, is consumed by transhydrogenase in NAD(P)+ reduction. Transhydrogenase is likely involved in the regulation of the citric acid cycle. Rubrum transhydrogenase has 3 components, dI, dII, and dIII. dII spans the membrane while dI and dIII protrude on the cytoplasmic/matirx side. DI contains 2 domains with Rossmann folds, linked by a long alpha helix, and contains a NAD binding site. Two dI polypeptides (represented in this sub-family) spontaneously form a heterotrimer with one dIII in the absence of dII. In the heterotrimer, both dI chains may bind NAD, but only one is well-ordered. dIII also binds a well-ordered NADP, but in a different orientation than classical Rossmann domains. Length = 317 |
| >gnl|CDD|217556 pfam03435, Saccharop_dh, Saccharopine dehydrogenase | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 3e-09
Identities = 37/125 (29%), Positives = 51/125 (40%), Gaps = 5/125 (4%)
Query: 925 LGLHEQTEIPASCESPFSVTCLLMEEKLAYSSTEEDMVLLHHEVEVEFPDGQPSENNRAT 984
LGL T A ++ LL E + E+D V + EVE G
Sbjct: 258 LGLLRPTVHYAYIPPLDALKSLL-ESPASLGPEEQDKVRIGVEVEGIDKLGV-LLTGHIY 315
Query: 985 LLEFGKMKNGKMISAMALTVGIPAGIAAMLLLVNKIKTRGVLRPIE---PEVYVPALDML 1041
+ + SAM T G PA +AA LL + GV+ P E P++++PAL L
Sbjct: 316 NAYGSGLSIEEGRSAMPYTTGTPAQVAAALLAGGEWAKPGVVEPEEDLDPDLFLPALPYL 375
Query: 1042 QAYGI 1046
GI
Sbjct: 376 GEVGI 380
|
This family comprised of three structural domains that can not be separated in the linear sequence. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase. The saccharopine dehydrogenase can also function as a saccharopine reductase. Length = 380 |
| >gnl|CDD|224827 COG1915, COG1915, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 4e-07
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 471 VSLSGHLFDQFLINEALDIIEAAGGSFHLVKCQVGQSTEALSFSELEVGADDSAVLDQII 530
+ L GHL D ++N ALDII GG F +++ +G+ S++E+ V A D L++I+
Sbjct: 6 IELEGHLIDSLILNRALDIIVDMGGDFQVLEFNLGKRKTDPSYAEILVSAPDHEHLEEIL 65
Query: 531 DSLTSL 536
L L
Sbjct: 66 SELIDL 71
|
Length = 415 |
| >gnl|CDD|240658 cd12181, ceo_syn, N(5)-(carboxyethyl)ornithine synthase | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 5e-07
Identities = 73/408 (17%), Positives = 130/408 (31%), Gaps = 146/408 (35%)
Query: 20 ERRAPLTPSHCARLLH-------SGRDKS-GVARIVVQPSTKRIHHDVLYEDVGCQI--- 68
E+R PL P+ R+ G + G++ D Y +G I
Sbjct: 13 EKRVPLLPADLERIPLREQLYFEEGYGERLGIS-------------DEEYAALGAGIVSR 59
Query: 69 SEDLSECGLVLGIK--QPKLEMILPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYE 126
E L++C ++ K IL + + H Q + + + ++++L +E
Sbjct: 60 EEILAKCDVICDPKPGDADYLEILEGQI--LWGWVHCVQDKEI--TQLAIDKKLTLIAWE 115
Query: 127 LIVGDNGRRLLAFGK---FAGRAGMIDFLHGLGQRYLSLGYSTPFLSLGASYMYSSLAAA 183
+ + F K AG A + LH L Q Y Y
Sbjct: 116 DMFEWSKIGRHVFYKNNELAGYAAV---LHAL-QLYGITPYRQ----------------T 155
Query: 184 KAAVISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFGK 243
K AV+ G GN + GA K
Sbjct: 156 KVAVL-----------------------GFGNTARGAIRALK------------------ 174
Query: 244 AKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAPYAS 303
GGA + Y E +F ++++ Y
Sbjct: 175 ----LGGADVTV---------------------------YTRRTEA---LFKEELSEY-D 199
Query: 304 VIVNCMYWEQRFPRLLSTQQLQDLVRKGCPLVGISDITCDIGGSLEFVNRTTSIDSSFFR 363
+IVNC+ + P + ++ ++ G ++ D++CD G +EF + T+ D ++
Sbjct: 200 IIVNCILQDTDRPDHIIYEEDLKRLKPGALII---DVSCDEGMGIEF-AKPTTFDDPIYK 255
Query: 364 YDPLSDSYHDDLEGNGLVCQAVDTLPTEFAKEASQHFGDILLEFIGSL 411
D G+ AVD P+ F + AS+ L ++ ++
Sbjct: 256 VD-------------GIDYYAVDHTPSLFYRSASRSISKALAPYLDTV 290
|
N(5)-(carboxyethyl)ornithine synthase (ceo_syn) catalyzes the NADP-dependent conversion of N5-(L-1-carboxyethyl)-L-ornithine to L-ornithine + pyruvate. Ornithine plays a key role in the urea cycle, which in mammals is used in arginine biosynthesis, and is a precursor in polyamine synthesis. ceo_syn is related to the NAD-dependent L-alanine dehydrogenases. Like formate dehydrogenase and related enzymes, ceo_syn is comprised of 2 domains connected by a long alpha helical stretch, each resembling a Rossmann fold NAD-binding domain. The NAD-binding domain is inserted within the linear sequence of the more divergent catalytic domain. These ceo_syn proteins have a partially conserved NAD-binding motif and active site residues that are characteristic of related enzymes such as Saccharopine Dehydrogenase. Length = 295 |
| >gnl|CDD|129401 TIGR00300, TIGR00300, TIGR00300 family protein | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 4e-06
Identities = 22/66 (33%), Positives = 37/66 (56%)
Query: 471 VSLSGHLFDQFLINEALDIIEAAGGSFHLVKCQVGQSTEALSFSELEVGADDSAVLDQII 530
+ L GHL D ++ +ALDII GG F +++ +G+ S++ + V A D L++I+
Sbjct: 6 IELEGHLIDSLILPKALDIILDMGGDFRVLEFNIGKRKNDPSYARILVSARDHQHLEEIL 65
Query: 531 DSLTSL 536
L L
Sbjct: 66 TELIDL 71
|
All members of the family come from genome projects. A partial length search brings in two plant lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzymes hitting the N-terminal region of the family [Hypothetical proteins, Conserved]. Length = 407 |
| >gnl|CDD|240664 cd12188, SDH, Saccharopine Dehydrogenase NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.001
Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 15/112 (13%)
Query: 304 VIVNCMYWEQRFPRLLSTQQLQDLVRKGCPLVGISDITCDIGGS---LEFVNRTTSIDSS 360
+ VNC+Y + P L+ + LQ R+ L I D++CD + + T+ D
Sbjct: 232 IFVNCIYLSKPIPPFLTPEMLQAPGRR---LRVIGDVSCDPTNPYNPIPIYDVATTFDKP 288
Query: 361 FFRYDPLSDSYHDDLEGNGLVCQAVDTLPTEFAKEASQHFGDILLEFIGSLS 412
R G L A+D LP+ +E+S+ F + LL + L+
Sbjct: 289 TLRVP---------TGGPPLDVIAIDHLPSLLPRESSEDFSNDLLPSLLELA 331
|
Saccharopine Dehydrogenase (SDH) catalyzes the final step in the reversible NAD-dependent oxidative deamination of saccharopine to alpha-ketoglutarate and lysine, in the alpha-aminoadipate pathway of L-lysine biosynthesis. SHD is structurally related to formate dehydrogenase and similar enzymes, having a 2-domain structure in which a Rossmann-fold NAD(P)-binding domain is inserted within the linear sequence of a catalytic domain of related structure. Length = 351 |
| >gnl|CDD|224662 COG1748, LYS9, Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 3/110 (2%)
Query: 920 KTIIFLGLHEQTEIPASCE-SPFSVTCLLMEEKLAYSSTEEDMVLLHHEVEVEFPDGQPS 978
K + LGL + + E P ++ + L+ + +D+ ++ EV+ DG+
Sbjct: 249 KALRDLGLLSREPVKVQQEIVPLEFLKAVLPDPLSLAPDYKDVTVIGVEVKG-TKDGRDK 307
Query: 979 ENNRATLLEFGKMKNGKMISAMALTVGIPAGIAAMLLLVNKIKTRGVLRP 1028
+ SA++ T G+PA I A LL + +T GV+ P
Sbjct: 308 TVFYNVKDHAE-AYSEVGSSAISYTTGVPAAIGAELLAEGEWETPGVVNP 356
|
Length = 389 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1053 | |||
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 100.0 | |
| KOG0172 | 445 | consensus Lysine-ketoglutarate reductase/saccharop | 100.0 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 100.0 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 100.0 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 100.0 | |
| COG3288 | 356 | PntA NAD/NADP transhydrogenase alpha subunit [Ener | 100.0 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 100.0 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 100.0 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 100.0 | |
| PF05222 | 136 | AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal | 99.95 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 99.95 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 99.95 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 99.94 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 99.94 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 99.94 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 99.94 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 99.93 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 99.92 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 99.92 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 99.91 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 99.87 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 99.87 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 99.82 | |
| KOG2733 | 423 | consensus Uncharacterized membrane protein [Functi | 99.68 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 99.61 | |
| KOG0172 | 445 | consensus Lysine-ketoglutarate reductase/saccharop | 99.09 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 99.07 | |
| PF04455 | 103 | Saccharop_dh_N: LOR/SDH bifunctional enzyme conser | 99.0 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.9 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 98.85 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 98.83 | |
| PF08501 | 83 | Shikimate_dh_N: Shikimate dehydrogenase substrate | 98.8 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 98.8 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 98.73 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 98.61 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 98.57 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 98.54 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 98.51 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 98.48 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 98.46 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 98.42 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 98.37 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 98.36 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 98.27 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 98.27 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 98.23 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 98.17 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 98.15 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 98.13 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 98.11 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 98.05 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 98.03 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 98.02 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 97.99 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 97.97 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 97.96 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 97.96 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.95 | |
| PRK08223 | 287 | hypothetical protein; Validated | 97.95 | |
| KOG2741 | 351 | consensus Dimeric dihydrodiol dehydrogenase [Carbo | 97.94 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 97.94 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 97.92 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 97.92 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 97.92 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 97.91 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 97.88 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 97.87 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 97.87 | |
| TIGR00300 | 407 | conserved hypothetical protein TIGR00300. All memb | 97.86 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 97.84 | |
| COG1915 | 415 | Uncharacterized conserved protein [Function unknow | 97.82 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 97.82 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 97.81 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 97.8 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 97.8 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 97.79 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 97.79 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 97.77 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 97.77 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 97.76 | |
| COG4091 | 438 | Predicted homoserine dehydrogenase [Amino acid tra | 97.75 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 97.75 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 97.75 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 97.72 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 97.71 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 97.69 | |
| TIGR03855 | 229 | NAD_NadX aspartate dehydrogenase. Members of this | 97.68 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 97.67 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 97.67 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.66 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 97.66 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 97.65 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 97.63 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 97.63 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 97.61 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 97.61 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 97.59 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 97.59 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 97.58 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 97.58 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 97.56 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 97.56 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 97.56 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 97.55 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 97.54 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 97.53 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 97.52 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 97.51 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 97.5 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 97.5 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 97.49 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 97.48 | |
| PRK07411 | 390 | hypothetical protein; Validated | 97.48 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 97.48 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 97.47 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 97.47 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 97.45 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 97.45 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 97.44 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 97.43 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 97.43 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 97.43 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 97.42 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 97.41 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 97.4 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 97.4 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 97.38 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 97.38 | |
| PRK05447 | 385 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; P | 97.37 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 97.35 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 97.34 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 97.34 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 97.34 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 97.34 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 97.33 | |
| COG0460 | 333 | ThrA Homoserine dehydrogenase [Amino acid transpor | 97.33 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 97.32 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 97.32 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 97.32 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 97.32 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 97.32 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 97.31 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 97.31 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 97.3 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 97.3 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.29 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 97.27 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 97.27 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 97.27 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 97.26 | |
| TIGR01381 | 664 | E1_like_apg7 E1-like protein-activating enzyme Gsa | 97.25 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 97.25 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 97.24 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 97.23 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 97.23 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 97.22 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 97.21 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 97.21 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 97.2 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 97.19 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 97.19 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 97.18 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 97.18 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 97.18 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 97.17 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 97.17 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 97.17 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 97.17 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 97.17 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 97.16 | |
| KOG2017 | 427 | consensus Molybdopterin synthase sulfurylase [Coen | 97.16 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 97.15 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 97.15 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 97.15 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 97.14 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 97.14 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 97.14 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 97.14 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 97.13 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 97.12 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 97.12 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 97.12 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 97.11 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 97.1 | |
| PRK05717 | 255 | oxidoreductase; Validated | 97.1 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 97.09 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 97.08 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 97.08 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 97.07 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 97.07 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 97.07 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 97.07 | |
| PRK06813 | 346 | homoserine dehydrogenase; Validated | 97.06 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 97.06 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 97.05 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 97.03 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 97.03 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.03 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 97.03 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 97.03 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 97.03 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 97.0 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 97.0 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 97.0 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 97.0 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 97.0 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 96.99 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 96.99 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 96.99 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 96.99 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 96.99 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 96.98 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 96.97 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 96.97 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 96.97 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 96.96 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 96.96 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 96.96 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 96.96 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 96.96 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 96.95 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 96.94 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 96.94 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 96.94 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 96.93 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 96.93 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 96.92 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 96.92 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 96.92 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 96.91 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 96.91 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 96.91 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 96.9 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 96.88 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 96.88 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 96.88 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 96.88 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 96.88 | |
| PRK08643 | 256 | acetoin reductase; Validated | 96.87 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 96.87 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 96.87 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 96.86 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 96.86 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 96.86 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 96.86 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 96.83 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 96.83 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 96.83 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 96.83 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 96.82 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.82 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 96.82 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 96.82 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 96.81 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 96.81 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 96.81 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 96.81 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 96.81 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 96.8 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 96.8 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 96.8 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 96.79 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 96.78 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 96.78 | |
| PLN02256 | 304 | arogenate dehydrogenase | 96.78 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 96.78 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 96.77 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 96.77 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 96.76 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 96.75 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 96.75 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 96.75 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 96.75 | |
| COG3804 | 350 | Uncharacterized conserved protein related to dihyd | 96.75 | |
| PRK09466 | 810 | metL bifunctional aspartate kinase II/homoserine d | 96.75 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 96.74 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 96.74 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 96.74 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 96.73 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 96.72 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 96.71 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 96.7 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 96.69 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 96.69 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 96.69 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 96.68 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.67 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 96.67 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 96.66 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 96.65 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 96.65 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 96.65 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 96.65 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 96.64 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 96.64 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 96.64 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 96.63 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 96.63 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 96.63 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 96.63 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 96.62 | |
| COG5310 | 481 | Homospermidine synthase [Secondary metabolites bio | 96.62 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 96.62 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 96.62 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 96.61 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 96.61 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 96.6 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 96.6 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 96.6 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 96.59 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 96.59 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 96.58 | |
| cd01490 | 435 | Ube1_repeat2 Ubiquitin activating enzyme (E1), rep | 96.58 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 96.58 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 96.58 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 96.58 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 96.58 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 96.57 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 96.57 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 96.57 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 96.56 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.56 | |
| PLN02928 | 347 | oxidoreductase family protein | 96.56 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 96.56 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 96.54 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 96.53 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 96.53 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 96.52 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 96.52 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 96.52 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 96.52 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 96.51 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 96.51 | |
| KOG3007 | 333 | consensus Mu-crystallin [Amino acid transport and | 96.5 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 96.5 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 96.49 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 96.49 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 96.48 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 96.46 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 96.46 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 96.46 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 96.46 | |
| PLN02712 | 667 | arogenate dehydrogenase | 96.45 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 96.45 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 96.44 | |
| COG0476 | 254 | ThiF Dinucleotide-utilizing enzymes involved in mo | 96.43 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 96.43 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 96.43 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 96.43 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 96.43 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 96.42 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 96.42 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 96.42 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 96.41 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 96.41 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 96.41 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 96.41 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 96.39 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 96.39 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.39 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 96.38 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 96.38 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 96.38 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 96.37 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 96.36 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 96.35 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 96.35 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 96.35 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 96.34 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.33 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 96.33 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 96.32 | |
| KOG1200 | 256 | consensus Mitochondrial/plastidial beta-ketoacyl-A | 96.32 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 96.3 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 96.3 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.3 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 96.29 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 96.28 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 96.28 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 96.28 | |
| cd01488 | 291 | Uba3_RUB Ubiquitin activating enzyme (E1) subunit | 96.27 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 96.26 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 96.25 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 96.25 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 96.24 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 96.23 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 96.22 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 96.22 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 96.22 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 96.21 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 96.21 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 96.21 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 96.2 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 96.19 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 96.18 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 96.18 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 96.18 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 96.18 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 96.18 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 96.17 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 96.17 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 96.16 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 96.16 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 96.15 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.14 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 96.13 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 96.13 | |
| PRK09436 | 819 | thrA bifunctional aspartokinase I/homoserine dehyd | 96.13 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 96.12 | |
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 96.11 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 96.11 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 96.11 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 96.11 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 96.1 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.1 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 96.1 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.09 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 96.09 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 96.08 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 96.08 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 96.05 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 96.05 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 96.05 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 96.05 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 96.04 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 96.04 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 96.03 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 96.03 | |
| PLN02712 | 667 | arogenate dehydrogenase | 96.03 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 96.02 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 96.02 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 96.01 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 96.01 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 96.0 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 95.99 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 95.99 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 95.97 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 95.97 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 95.97 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 95.96 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 95.95 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 95.95 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 95.95 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 95.95 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 95.93 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 95.93 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 95.93 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 95.92 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 95.92 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.9 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 95.89 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.89 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 95.89 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 95.88 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 95.87 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.87 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 95.86 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 95.85 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 95.85 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 95.84 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 95.84 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 95.82 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 95.82 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 95.81 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 95.81 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 95.79 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 95.78 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 95.78 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 95.78 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 95.77 | |
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 95.76 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 95.73 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 95.71 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 95.71 | |
| TIGR03693 | 637 | ocin_ThiF_like putative thiazole-containing bacter | 95.7 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 95.68 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 95.67 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 95.67 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 95.67 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 95.66 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 95.65 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 95.65 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 95.64 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 95.62 | |
| PLN02494 | 477 | adenosylhomocysteinase | 95.62 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 95.61 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 95.61 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.6 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.59 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 95.57 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 95.56 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 95.54 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 95.53 | |
| TIGR03736 | 244 | PRTRC_ThiF PRTRC system ThiF family protein. A nov | 95.52 | |
| KOG2013 | 603 | consensus SMT3/SUMO-activating complex, catalytic | 95.51 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 95.5 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 95.5 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 95.48 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.46 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 95.44 |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-196 Score=1801.20 Aligned_cols=1037 Identities=72% Similarity=1.164 Sum_probs=934.9
Q ss_pred CCCceEEEEeeccCCCCCcceecChHHHHHHHhcCCCCcceeEEEEcCCCCCCCCChhHhhCCcEEccCCCcCCEEEeec
Q 001559 3 MLGNGVVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPSTKRIHHDVLYEDVGCQISEDLSECGLVLGIK 82 (1053)
Q Consensus 3 ~~~~~~IGi~~E~~~~~ErRv~ltP~~v~~L~~~G~~~~~~~~V~VE~~a~~~f~D~~Y~~aGA~i~~~~~~adiIl~Vk 82 (1053)
+.++.+|||+||++++|||||||||++|++|++.|.+ ++.++|+||+|++|+|+|++|++|||+|++++++||||||||
T Consensus 2 ~~~~~~IgI~kE~~~~~E~RVaLtP~~v~~L~~~G~~-~~~~~V~VE~gA~a~f~D~~Y~~AGA~I~~~~~~adiIl~Vk 80 (1042)
T PLN02819 2 KLGNGVVGILAETVNKWERRAPLTPSHCARLLHSGKD-RTVSRIIVQPSSKRIHHDAQYEDVGCEISEDLSDCGLILGVK 80 (1042)
T ss_pred CcCCcEEEEEecCCCCCCCccCcCHHHHHHHHHCCCC-CCCCEEEEcCCCCCCCChHHHHHCCCEEECCCCCCCEEEEEC
Confidence 4567899999999966999999999999999999910 111299999999999999999999999999888899999999
Q ss_pred CCCccccCCCCeEEEEcccccccCCCHHHHHHHHHcCCcEEEeccccCCCCcccchHHHHHHHHHHHHHHHHhhHhhhhc
Q 001559 83 QPKLEMILPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYELIVGDNGRRLLAFGKFAGRAGMIDFLHGLGQRYLSL 162 (1053)
Q Consensus 83 ~p~~~~l~~~~t~i~fsh~~k~q~~n~~ll~~l~~k~it~i~~E~i~~~~~~~l~~fg~~AG~ag~~~al~~l~~~~l~~ 162 (1053)
||+.++++++++|++|+|++|+|++|++++++|+++|+|+||||+|+|++|+||.+||+|||++|++++|+++|.++|.+
T Consensus 81 eP~~eell~~~~~i~fs~~~~aq~~n~~ll~~l~~k~it~~ayE~i~~~~G~rl~~fg~~AG~~g~~~~l~~~g~~~L~~ 160 (1042)
T PLN02819 81 QPKLEMLLPDRAYAFFSHTHKAQPENMPLLDKILEERVSLFDYELIVGDHGKRLVAFGKYAGRAGMIDFFRGLGQRLLSL 160 (1042)
T ss_pred CCCHHHhcCCCEEEEEecccccccCCHHHHHHHHHcCCeEEEEeceECCCCCEEeechHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccccccccHHHHHHHHHhhchhhhccCCCCCCCCeEEEEEccchhHHHHHHHHhhCCCceecCCCchhhhh
Q 001559 163 GYSTPFLSLGASYMYSSLAAAKAAVISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFG 242 (1053)
Q Consensus 163 g~~tpf~~~~~~~~y~~~~~~~~a~~~~g~~i~~~g~p~~~~p~~v~i~G~G~vg~gA~~~~~~LGa~~V~~~dl~~~~~ 242 (1053)
|++||||+++++|+|+|++++++|++++|++|+++|+|++++|.+|||+|+|+||+||+++|+.|||++|++.+|+++.+
T Consensus 161 ~~~~pf~~l~~~~~y~~~~~~~~a~~~~G~~i~~~g~p~gv~P~~vVi~G~G~Vg~gA~~i~~~lg~~~v~~~~l~~l~~ 240 (1042)
T PLN02819 161 GYSTPFLSLGSSYMYSSLAAAKAAVISVGEEIASSGLPLGICPLVFVFTGSGNVSQGAQEIFKLLPHTFVEPSKLPELKG 240 (1042)
T ss_pred cCCCcccccccccccCCHHHHHHHHHhccceeeccCCCCCCCCeEEEEeCCchHHHHHHHHHhhcCCCccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988843
Q ss_pred cccccCCCCcccceEEEeeeecccccccccCCCCCccccccccCccCcCcchhhhccCCCcEEEEcccccCCCCcccCHH
Q 001559 243 KAKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAPYASVIVNCMYWEQRFPRLLSTQ 322 (1053)
Q Consensus 243 ~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~f~~~~~~~~DilIn~a~~g~~~P~Lit~~ 322 (1053)
.. +......+++++|||.+..+++.++++.++.|++++||+|||.|.|.|++++++++||||||+||+.++|+|||++
T Consensus 241 ~~--~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~~y~~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~ 318 (1042)
T PLN02819 241 IS--QNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKADYYAHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTK 318 (1042)
T ss_pred hh--cCCccccccceeeeeecChHHHhhccCCccccchhhhccCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHH
Confidence 21 1112233444599999999999999986789999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCC-CCceEEEEEeecCCCceeeecccccccCCeEEeCCCCCCcCCCCCCCCeEEEecCChhhHHHHHHHHHHH
Q 001559 323 QLQDLVRKG-CPLVGISDITCDIGGSLEFVNRTTSIDSSFFRYDPLSDSYHDDLEGNGLVCQAVDTLPTEFAKEASQHFG 401 (1053)
Q Consensus 323 ~v~~m~k~~-~~gsvIvDis~D~gG~iE~t~~~tti~~P~~~~~~~~~~~~~~~~~~gV~i~~vdnLPs~lp~~AS~~fs 401 (1053)
|+.++||+| +|++||||||||+||||||+.++|||++|+|.|||.+++.||++..+||+||||||||+++|++||++||
T Consensus 319 ~~~~~mk~G~~~l~vI~DVs~D~gG~ie~~~~~Tt~~~P~~~~~~~~~~~~~~~~~~gv~~~~VdNlP~~lPr~AS~~f~ 398 (1042)
T PLN02819 319 QLQDLTRKGGCPLVGVCDITCDIGGSIEFLNKTTSIEKPFFRYNPSNNSYHDDMDGDGILCMAVDILPTEFAKEASQHFG 398 (1042)
T ss_pred HHHHhhcCCCccceEEEEEccCCCCCeeecccCCCCcCCeEeecccccccccccCCCCeEEEEECCccccCHHHHHHHHH
Confidence 555445765 7889999999999999999989999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcCCHHHHhhhhhcCCeecCCCCchhHhhhcCccccccccccCCCCccccceeeeccccccccc
Q 001559 402 DILLEFIGSLSSTVDFTELPSHLRRACIAHGGALTTLYEYIPRMRKSDSEDVSDNLAKGHSNKKKHNLLVSLSGHLFDQF 481 (1053)
Q Consensus 402 ~~l~~~l~~l~~~~~~~~~~~~l~~a~i~~~G~lt~~~~yi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~gHl~d~~ 481 (1053)
+.|+||+..|++.+....+++.|++||++++|+||++|+||++||+.+.+.... +. .++.+++..++++||+||++
T Consensus 399 n~llpyv~~la~~g~~~~~~~~l~~a~~~~~G~lT~~~~yi~~~~~~~~~~~~~---~~-~~~~~~~~~v~l~ghl~d~~ 474 (1042)
T PLN02819 399 NILSPFVGSLASMKELAELPSHLRRACIAHRGSLTPLFEYIPRMRNSNAELAQD---TV-SSQSTFNILVSLSGHLFDKF 474 (1042)
T ss_pred HHHHHHHHHHHhCCchhccCHHHhcceeeeCCEecCchHHHHHHHhcccccccc---cc-cccccceEEEEeeeecccch
Confidence 999999999998765336789999999999999999999999999876554322 11 25789999999999999999
Q ss_pred chhhhhHHHHHcCCcEEEEEEEeCCCCcCccccccccCCCCcchhhhhhcccccchhccCCccccccceeecceeeeeee
Q 001559 482 LINEALDIIEAAGGSFHLVKCQVGQSTEALSFSELEVGADDSAVLDQIIDSLTSLANASENNRDQISGINRISLRIGKVQ 561 (1053)
Q Consensus 482 ~~n~Aldv~~f~~g~v~lvef~V~~~s~~~sl~~lnvt~p~k~~l~~~ld~~~~~a~~~g~~n~~~~~~~~~~~~~g~~~ 561 (1053)
++|.+||+.+.++|+|++++|+++++....|.+.+.|+.++.+.|.++||+++.+|++.++........++.....++.+
T Consensus 475 lin~~ld~i~~~gg~~~~~~~~~gqs~~~~S~~~l~v~a~d~~~L~~i~~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~ 554 (1042)
T PLN02819 475 LINEALDVIEAAGGSFHLAKCQVGQSADAESYSELEVGADDKEVLDQIIDSLTRLANPNEDYISPAREANKIFLKIGKVQ 554 (1042)
T ss_pred hhhhhhhhhhccCCceeeeeeccccCcccccceeeecccCcHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhccc
Confidence 99999999999999999999999988899999999999999999999999999999999987643333333333333222
Q ss_pred ccc--ccCCCCCCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCC
Q 001559 562 ETA--TQKGPGTKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPN 639 (1053)
Q Consensus 562 ~~~--~~~~~~~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~ 639 (1053)
..+ .+......++++|+|||+|++|+.++++|++.+++ .++.++.+...+..|+|+|++.++++++++.+++
T Consensus 555 ~~~~~~~~~~~~~~~~rIlVLGAG~VG~~~a~~La~~~~~------~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~ 628 (1042)
T PLN02819 555 QENECNEKAEVTKKSQNVLILGAGRVCRPAAEYLASVKTI------SYYGDDSEEPTDVHVIVASLYLKDAKETVEGIEN 628 (1042)
T ss_pred ccccccccccccccCCcEEEECCCHHHHHHHHHHHhCcCc------cccccccccccccEEEEECCCHHHHHHHHHhcCC
Confidence 221 11222345688999999999999999999987642 1233333434456799999999999999998888
Q ss_pred ceEEEecCCCHHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeeccChhHHHHHHHHHHcCCeEEecCCCChh
Q 001559 640 AEAVQLDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGEMGLDPG 719 (1053)
Q Consensus 640 ~~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~l~g~G~dPG 719 (1053)
++++++|++|.++|.++++++|+||+|+|+.+|..++++|+++|+||+|.+|..+++.+|+++|+++|+++++++|+|||
T Consensus 629 ~~~v~lDv~D~e~L~~~v~~~DaVIsalP~~~H~~VAkaAieaGkHvv~eky~~~e~~~L~e~Ak~AGV~~m~e~GlDPG 708 (1042)
T PLN02819 629 AEAVQLDVSDSESLLKYVSQVDVVISLLPASCHAVVAKACIELKKHLVTASYVSEEMSALDSKAKEAGITILCEMGLDPG 708 (1042)
T ss_pred CceEEeecCCHHHHHHhhcCCCEEEECCCchhhHHHHHHHHHcCCCEEECcCCHHHHHHHHHHHHHcCCEEEECCccCHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCceEEEEeeccCCCCCCCCCCccccccccCHHHHHHhccCCceEEECCEEEEecCCCccccce
Q 001559 720 IDHMMAMKMINHAHVRKGKIKSFTSYCGGLPSPAAANNPLAYKFSWSPAGAIRAGRNPAIYLFNGKTVQVDGDSLYDSAE 799 (1053)
Q Consensus 720 i~~mla~~~i~~~~~~~~~v~sf~~~~Gg~p~p~~~~~pl~yk~swsp~~~l~~~~~pa~~~~~G~~~~v~~~~~~~~~~ 799 (1053)
++||++++++++.+.++|++.+|.+||||+|+|++++|||+|||||||+++|++|+||+++++||++++|++.++++..+
T Consensus 709 id~~lA~~~Id~~~~~~GkI~s~~s~~GGLP~pe~~~npL~YkfsWSp~gvi~~~~npa~~i~~G~~~~V~~~~l~~~~~ 788 (1042)
T PLN02819 709 IDHMMAMKMIDDAHERGGKVKSFTSYCGGLPSPEAANNPLAYKFSWNPAGAIKAGQNPAVYKSNGQIIHVDGENLFASAV 788 (1042)
T ss_pred HHHHHHHHHHHhhcccCCcEEEEEEEEcCccCcccCCCcccccccCCHHHHHHHhcCcceeeECCEEEEecchhhhhhcc
Confidence 99999999999988788999999999999999999999999999999999999999999999999999999989999889
Q ss_pred EEEecCCCcceeecccCCCccccccccCcCcCccccceeeeecccHHHHHHHHHHcCCCCCCCcccccCCCCCCHHHHHH
Q 001559 800 KFRIADLPAFALECLPNRNSLVYGDIYGIGKEASTIFRGTLRYEGFGEIMGTLGRIGFFSAETHPVLKQGSGPTFRMFLC 879 (1053)
Q Consensus 800 ~~~~p~~~~~~le~~~n~dsl~~~~~ygi~~~~~~l~r~TlRy~G~~~~~~~l~~lGLl~~~~~~~~~~g~~~s~~~~~~ 879 (1053)
+++|+.+++|.||+||||||++|.+.|||+.+++||+||||||+||+++|++|++||||++++.+.+..+..+||+++++
T Consensus 789 ~~~~~~~p~~~lE~~pNRdSl~y~~~Ygi~~~a~tl~RgTLRy~Gf~~~~~~l~~LGl~~~~~~~~~~~~~~~tw~~~~~ 868 (1042)
T PLN02819 789 RFRLPNLPAFALECLPNRDSLVYGELYGIEKEAATIFRGTLRYEGFSMIMATLSKLGLFDSENHPLLSTGKRTTYGALLD 868 (1042)
T ss_pred ccccccCCCcceEEccCCCcchhHHHhCCCcccceeeEEEEecCCHHHHHHHHHHcCCCCCCccccccCCCCCCHHHHHH
Confidence 99999899999999999999999999999439999999999999999999999999999999988776677899999999
Q ss_pred HHhhcccccCCCCCCChHHHHHHHHhcCccchhhhHHHHHHHHHhhccccCcccCCCCCChhHHhHHHHHHhhcCCCCCC
Q 001559 880 EILKMDSQKMGEAPLGEKEITERILSLGHCKERETASKAAKTIIFLGLHEQTEIPASCESPFSVTCLLMEEKLAYSSTEE 959 (1053)
Q Consensus 880 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~p~~~~~~~L~~kl~~~p~e~ 959 (1053)
.+++.++++..+...+++++..++.....+...+++..+++.++|||||++++++..++||+|+||++|++||+|.|+|+
T Consensus 869 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~v~~~~~tp~d~l~~~Le~kl~y~~~e~ 948 (1042)
T PLN02819 869 ALLLQDGHNENGPLAGEEEISKRLAKLGHSKNRETAAKAAKTIVFLGLDEETEVPKSCKSIFDVTCYRMEEKLAYSGNEQ 948 (1042)
T ss_pred HHhCCCCcccccccccchhHHHHHHhhhcccchhhHHHHHHHhhhhcccccccccCCCCCHHHHHHHHHHHHhCCCCCCC
Confidence 99997443222333457777777777655665666788999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEEEEEcCCCeeeeeEEEEEEEeccccCCCcccchhhhhhHHHHHHHHHHHcCccCCCceecccCCCccHHHHH
Q 001559 960 DMVLLHHEVEVEFPDGQPSENNRATLLEFGKMKNGKMISAMALTVGIPAGIAAMLLLVNKIKTRGVLRPIEPEVYVPALD 1039 (1053)
Q Consensus 960 D~v~m~~~v~~~~~~g~~~~~~~~tl~~~g~~~~~~~~tAMa~ttG~p~aiaA~lil~g~i~~~GV~~P~~~~~y~p~L~ 1039 (1053)
|||+|+|+|++++++|++.++++++|++||++..++++||||||||+|+||||++||+|+|+.+||+.|.++++|.|+|+
T Consensus 949 DmVvl~h~~~~e~~~g~~~~~~t~tlv~~Gd~~~g~~~SAMAktVG~P~aiaa~lil~g~I~~~Gv~~P~~~eiy~p~l~ 1028 (1042)
T PLN02819 949 DMVLLHHEVEVEFPDSKRIEKHSATLLEFGEIKNGRTTTAMAKTVGIPAAIGALLLLEGKIKTRGVLRPLEPEVYVPALE 1028 (1042)
T ss_pred eEEEEEEEEEEEECCCCceEEEEEEEEEecCcCCCCcccHHHHhhcchHHHHHHHHhCCCcCCCeeeCCCCHHHhHHHHH
Confidence 99999999999998887658999999999997445568999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEc
Q 001559 1040 MLQAYGIKLVEKS 1052 (1053)
Q Consensus 1040 ~L~~~GI~~~e~~ 1052 (1053)
+|+++||.++|++
T Consensus 1029 ~L~~~GI~~~e~~ 1041 (1042)
T PLN02819 1029 ILQAYGIKLMEKV 1041 (1042)
T ss_pred HHHHcCCceEEEe
Confidence 9999999999986
|
|
| >KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-73 Score=623.49 Aligned_cols=441 Identities=45% Similarity=0.711 Sum_probs=406.1
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH-H
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK-S 652 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~-~ 652 (1053)
+++||++|+|+++++++++|+++. ++.|+|++|+..++++++...+ ++++.+|+.+.+ .
T Consensus 2 ~~~vlllgsg~v~~p~~d~ls~~~-------------------dv~vtva~~~~~~~~~~~~~~~-~~av~ldv~~~~~~ 61 (445)
T KOG0172|consen 2 KKGVLLLGSGFVSRPVADFLSRKK-------------------DVNVTVASRTLKDAEALVKGIN-IKAVSLDVADEELA 61 (445)
T ss_pred CcceEEecCccccchHHHHHhhcC-------------------CceEEEehhhHHHHHHHhcCCC-ccceEEEccchHHH
Confidence 578999999999999999999987 3699999999999999999876 899999999887 8
Q ss_pred HHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeeccChhHHHHHHHHHHcCCeEEecCCCChhHHHHHHHHHHHHh
Q 001559 653 LCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMINHA 732 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla~~~i~~~ 732 (1053)
|+..+++.|+||+++|+.+|+.+++.|+..+.|+++.||+.+++++|++.|+.+|+++++++|+|||||||+|+..++.+
T Consensus 62 L~~~v~~~D~viSLlP~t~h~lVaK~~i~~~~~~vtsSyv~pe~~~L~~~~v~AG~ti~~e~gldpGidhm~a~~ti~~v 141 (445)
T KOG0172|consen 62 LRKEVKPLDLVISLLPYTFHPLVAKGCIITKEDSVTSSYVDPELEELEKAAVPAGSTIMNEIGLDPGIDHMPAMKTIDLV 141 (445)
T ss_pred HHhhhcccceeeeeccchhhHHHHHHHHHhhcccccccccCHHHHhhhhhccCCCceEecccccCcchhhhhhhccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCceEEEEeeccCCCCCCCCCCccccccccCHHHHHHhccCCceEEECCEEEEecCCCccccceEEEecCCCcceee
Q 001559 733 HVRKGKIKSFTSYCGGLPSPAAANNPLAYKFSWSPAGAIRAGRNPAIYLFNGKTVQVDGDSLYDSAEKFRIADLPAFALE 812 (1053)
Q Consensus 733 ~~~~~~v~sf~~~~Gg~p~p~~~~~pl~yk~swsp~~~l~~~~~pa~~~~~G~~~~v~~~~~~~~~~~~~~p~~~~~~le 812 (1053)
+..+++++||.+||||+|+|+.++||+||||||||.+++.+.+++|.|+.||+.+.|++.++++..-+++| +++++++
T Consensus 142 h~hgg~i~sf~sycGglpape~s~nplgykfsws~~gvl~a~rnsAky~~~Gkiv~v~g~~~~~~~~~~~~--~pg~al~ 219 (445)
T KOG0172|consen 142 HEHGGKIKSFKSYCGGLPAPERSNNPLGYKFSWSPLGVLLALRNSAKYYKNGKIVEVDGGDLADTATHYDF--YPGPALE 219 (445)
T ss_pred HhhcceeeehhhhcCCccChhhCCCCcceeeccchhhhhhhccccchhccCCeEEEeccccHHhhccCccc--Ccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999888777667777 7788999
Q ss_pred cccCCCccccccccCcCcCccccceeeeecccHHHHHHHHHHcCCCCCCCcccccC-CCCCCHHHHHHHHhhcccccCCC
Q 001559 813 CLPNRNSLVYGDIYGIGKEASTIFRGTLRYEGFGEIMGTLGRIGFFSAETHPVLKQ-GSGPTFRMFLCEILKMDSQKMGE 891 (1053)
Q Consensus 813 ~~~n~dsl~~~~~ygi~~~~~~l~r~TlRy~G~~~~~~~l~~lGLl~~~~~~~~~~-g~~~s~~~~~~~~l~~~~~~~~~ 891 (1053)
|||||||+.|.+.|+|+.++++++|||+||.||..++.+|.++|+++.+-.+.... +..++|.++++.+.+..
T Consensus 220 ~yPNrdst~y~evy~I~~ea~tilrgtlryqgf~~~i~aL~~~G~~~~da~~~~~~~an~L~W~~~~~~~~g~~------ 293 (445)
T KOG0172|consen 220 CYPNRDSTEYSEVYGIPREAKTILRGTLRYQGFVLIIGALVRCGLLACDALEKFSIPANILTWKELLTSLGGPF------ 293 (445)
T ss_pred ccCCcchhhHHHHhcchHHHHHHHhcccccccHHHHHHHHHHcCccchhhHhhcCCCCCcccHHHHHHhhcCCC------
Confidence 99999999999999994499999999999999999999999999999887554433 57899999999998852
Q ss_pred CCCChHHHHHHHHhcCccchhhhHHHHHHHHHhhccccCcccCCCCCChhHHhHHHHHHhhcCCCCCCceEEEEEEEEEE
Q 001559 892 APLGEKEITERILSLGHCKERETASKAAKTIIFLGLHEQTEIPASCESPFSVTCLLMEEKLAYSSTEEDMVLLHHEVEVE 971 (1053)
Q Consensus 892 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~p~~~~~~~L~~kl~~~p~e~D~v~m~~~v~~~ 971 (1053)
..+.+++|...+..+-..+ .+++.++.|||++++..++. +++++|++|.+|+.+++|.++|+||++|+|.++++
T Consensus 294 ~~i~ed~i~~i~~~~~~~~-----~~~l~~~e~Lg~~~~k~v~~-~~~~~DTl~~~l~~~l~y~~~e~Dmvvl~h~~~~~ 367 (445)
T KOG0172|consen 294 SEIEEDDIKVICIYLSGKD-----PRILSTLEWLGLFSDKLVTV-RGVSLDTLCPHLEEPLYYVDTEFDMVVLQHKFGTE 367 (445)
T ss_pred cCccHHHHHHHHHHhhcCc-----cchhhhhHhcCCCccccccc-cCCchhccccccccceeccCCccceeEEEecceee
Confidence 2345666666665532111 15788999999999877654 59999999999999999999999999999999999
Q ss_pred cCCCeeeeeEEEEEEEeccccCCCcccchhhhhhHHHHHHHHHHHcCccCCCceecccCCCccHHHHHHHHhCCCEEEEE
Q 001559 972 FPDGQPSENNRATLLEFGKMKNGKMISAMALTVGIPAGIAAMLLLVNKIKTRGVLRPIEPEVYVPALDMLQAYGIKLVEK 1051 (1053)
Q Consensus 972 ~~~g~~~~~~~~tl~~~g~~~~~~~~tAMa~ttG~p~aiaA~lil~g~i~~~GV~~P~~~~~y~p~L~~L~~~GI~~~e~ 1051 (1053)
++.|+. ++++.+++.||+. .|+++||+|||+|+|++++++++|.|..+|++.|.+.++|.|.+++|+++||..+|+
T Consensus 368 ~p~g~~-e~~t~~l~~yg~~---ng~samaktVg~p~ai~~~~~l~~~I~akgl~~p~~~ev~~p~l~~l~~~gi~~~~~ 443 (445)
T KOG0172|consen 368 PPEGKV-ESITHTLVLYGRE---NGESAMAKTVGSPTAIAAKMLLDGWIRAKGLLRPMSAEVYRPALDRLKAYGIKLTEK 443 (445)
T ss_pred CCCCce-EEeeecHhhcCCc---cchhHHHHhcCchHhhhhhhcccceeecccccchhhHHhhhHHHHHHHHhCceeeee
Confidence 999999 9999999999987 789999999999999999999999999999999999999999999999999999987
Q ss_pred c
Q 001559 1052 S 1052 (1053)
Q Consensus 1052 ~ 1052 (1053)
.
T Consensus 444 ~ 444 (445)
T KOG0172|consen 444 I 444 (445)
T ss_pred c
Confidence 4
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-64 Score=586.02 Aligned_cols=354 Identities=19% Similarity=0.282 Sum_probs=292.1
Q ss_pred EEEEeeccCCCCCcceecChHHHHHHHhcCCCCcceeEEEEcCCC--CCCCCChhHhhCCcEEccCC--CcCCEEEeecC
Q 001559 8 VVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPST--KRIHHDVLYEDVGCQISEDL--SECGLVLGIKQ 83 (1053)
Q Consensus 8 ~IGi~~E~~~~~ErRv~ltP~~v~~L~~~G~~~~~~~~V~VE~~a--~~~f~D~~Y~~aGA~i~~~~--~~adiIl~Vk~ 83 (1053)
+|||+||++ +|||||||||++|++|+++| |+|+||+|+ .++|+|++|++|||+|+++. .+||||+|||+
T Consensus 1 ~IGvpkE~~-~~E~RVAltP~~v~~L~k~G------~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~~~~adiIlkV~~ 73 (511)
T TIGR00561 1 KIGVPRESL-DNECRVAATPKTVQQLLKLG------FDVLVETGAGAKASFADRAFESAGAGIVDGTLFWQSDIILKVNA 73 (511)
T ss_pred CEEEecCCC-CCCeeeccCHHHHHHHHhCC------CEEEEECCCCcCCCcCHHHHHHcCCEEecccchhcCCEEEEeCC
Confidence 489999999 89999999999999999999 999999998 69999999999999998763 35999999999
Q ss_pred CCcccc---CCCCeEEEEcccccccCCCHHHHHHHHHcCCcEEEeccccCC---CCcc-cchHHHHHHHHHHHHHHHHhh
Q 001559 84 PKLEMI---LPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYELIVGD---NGRR-LLAFGKFAGRAGMIDFLHGLG 156 (1053)
Q Consensus 84 p~~~~l---~~~~t~i~fsh~~k~q~~n~~ll~~l~~k~it~i~~E~i~~~---~~~~-l~~fg~~AG~ag~~~al~~l~ 156 (1053)
|+++|+ ++|+++++|+|+. .|++++++|+++|+|+|+||.|||. |.++ +++|+++|||++++++++.|+
T Consensus 74 P~~~e~~~l~~g~tli~~l~p~----~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iAGy~Avi~Aa~~lg 149 (511)
T TIGR00561 74 PSDAEIAELPAGKALVSFIWPA----QNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIAGYRAIIEAAHEFG 149 (511)
T ss_pred CCHHHHHhcCCCCEEEEEcCcc----CCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHHHHHHHHHHHHHhh
Confidence 998654 7999999999964 4899999999999999999999874 4454 688999999999999999999
Q ss_pred HhhhhcCCCCCccccccccccccHHHHHHHHHhhchhhhccCCCCCCCCeEEEEEccchhHHHHHHHHhhCCCceecCCC
Q 001559 157 QRYLSLGYSTPFLSLGASYMYSSLAAAKAAVISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSR 236 (1053)
Q Consensus 157 ~~~l~~g~~tpf~~~~~~~~y~~~~~~~~a~~~~g~~i~~~g~p~~~~p~~v~i~G~G~vg~gA~~~~~~LGa~~V~~~d 236 (1053)
+++. |..|++ + .++|.+++|+|+|++|+.|+.+++++|+. |.+.|
T Consensus 150 r~~~--g~~taa----------------------------g----~vp~akVlViGaG~iGl~Aa~~ak~lGA~-V~v~d 194 (511)
T TIGR00561 150 RFFT--GQITAA----------------------------G----KVPPAKVLVIGAGVAGLAAIGAANSLGAI-VRAFD 194 (511)
T ss_pred hhcC--CceecC----------------------------C----CCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEe
Confidence 9753 333322 2 45689999999999999999999999997 77777
Q ss_pred chhhhhcccccCCCCcccceEEEeeeecccccccccCCCCCccccccccCccCcCcchhhhccCCCcEEEEcccc-cCCC
Q 001559 237 LPELFGKAKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAPYASVIVNCMYW-EQRF 315 (1053)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~f~~~~~~~~DilIn~a~~-g~~~ 315 (1053)
.+....+. .+.+|+++...+..+..++.++|+++...++.+..+..+ .+.++.+||+|||++| |+++
T Consensus 195 ~~~~rle~-----------a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~-~e~~~~~DIVI~TalipG~~a 262 (511)
T TIGR00561 195 TRPEVKEQ-----------VQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELF-AAQAKEVDIIITTALIPGKPA 262 (511)
T ss_pred CCHHHHHH-----------HHHcCCeEEeccccccccccccceeecCHHHHHHHHHHH-HHHhCCCCEEEECcccCCCCC
Confidence 54322210 012455543444334445568999886555554445556 5566789999999999 9999
Q ss_pred CcccCHHHHHHhhcCCCCceEEEEEeecCCCceeeecccccccCCeEEeCCCCCCcCCCCCCCCeEEEecCChhhHHHHH
Q 001559 316 PRLLSTQQLQDLVRKGCPLVGISDITCDIGGSLEFVNRTTSIDSSFFRYDPLSDSYHDDLEGNGLVCQAVDTLPTEFAKE 395 (1053)
Q Consensus 316 P~Lit~~~v~~m~k~~~~gsvIvDis~D~gG~iE~t~~~tti~~P~~~~~~~~~~~~~~~~~~gV~i~~vdnLPs~lp~~ 395 (1053)
|+|||++|++.| | |||+|||||||+|||||++.+. |+|+. ++||+|||++|||+++|++
T Consensus 263 P~Lit~emv~~M-K---pGsvIVDlA~d~GGn~E~t~p~-----~~~~~------------~~GV~~~gv~nlPs~~p~~ 321 (511)
T TIGR00561 263 PKLITEEMVDSM-K---AGSVIVDLAAEQGGNCEYTKPG-----EVYTT------------ENQVKVIGYTDLPSRLPTQ 321 (511)
T ss_pred CeeehHHHHhhC-C---CCCEEEEeeeCCCCCEEEecCc-----eEEEe------------cCCEEEEeeCCccccCHHH
Confidence 999999999996 6 7899999999999999997543 34543 3689999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCC--CCC-cC-CHHHHhhhhhcCCeecCCCC
Q 001559 396 ASQHFGDILLEFIGSLSSTV--DFT-EL-PSHLRRACIAHGGALTTLYE 440 (1053)
Q Consensus 396 AS~~fs~~l~~~l~~l~~~~--~~~-~~-~~~l~~a~i~~~G~lt~~~~ 440 (1053)
||++||+|++|||..|++++ .+. |+ |++++++|++++|++|++..
T Consensus 322 AS~l~s~nl~~~l~~l~~~~~~~~~~d~~d~vlr~~~v~~~G~it~~~p 370 (511)
T TIGR00561 322 SSQLYGTNLVNLLKLLCKEKDGNIKVDFEDVVIRGVTVSREGEITWPPP 370 (511)
T ss_pred HHHHHHHHHHHHHHHHHhCcccccccCcCChHHhcCeEEECCEEeCCCC
Confidence 99999999999999998542 222 55 89999999999999999764
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-61 Score=514.33 Aligned_cols=337 Identities=21% Similarity=0.312 Sum_probs=292.2
Q ss_pred eEEEEeeccCCCCCcceecChHHHHHHHhcCCCCcceeEEEEcCCC--CCCCCChhHhhCCcEEccCCC----cCCEEEe
Q 001559 7 GVVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPST--KRIHHDVLYEDVGCQISEDLS----ECGLVLG 80 (1053)
Q Consensus 7 ~~IGi~~E~~~~~ErRv~ltP~~v~~L~~~G~~~~~~~~V~VE~~a--~~~f~D~~Y~~aGA~i~~~~~----~adiIl~ 80 (1053)
|+||+|||+| ++|+||+|||..|+.|+++| |+|+||.|+ +++|+|++|+++||+|+++.. ++|+|+|
T Consensus 1 M~IGvpkEik-~~E~RValtP~~V~~l~~~G------heVlVe~gAG~gsg~~D~~Y~~aGA~Iv~ta~~vw~~~dmvvK 73 (371)
T COG0686 1 MRIGVPKEIK-NNENRVALTPASVRELVNHG------HEVLVETGAGAGSGFDDDDYEAAGAKIVATAAEVWAEADMVVK 73 (371)
T ss_pred Cccccccccc-CCcceeccChHhHHHHHhCC------cEEEEecCCcCCCCCChHHHHHcCCEEecCHHHhhcccceEEE
Confidence 6899999999 89999999999999999999 999999999 799999999999999996542 4899999
Q ss_pred ecCCCcccc---CCCCeEEEEcccccccCCCHHHHHHHHHcCCcEEEeccccCCCCcc--cchHHHHHHHHHHHHHHHHh
Q 001559 81 IKQPKLEMI---LPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYELIVGDNGRR--LLAFGKFAGRAGMIDFLHGL 155 (1053)
Q Consensus 81 Vk~p~~~~l---~~~~t~i~fsh~~k~q~~n~~ll~~l~~k~it~i~~E~i~~~~~~~--l~~fg~~AG~ag~~~al~~l 155 (1053)
||||.+.|+ ++++++|.|.|. +..+++.+.|+++|+|.|+||.+...+|.. |..|+.+||..++..+++.|
T Consensus 74 vKEP~~~EY~ylregqiLftyLHL----A~~~~lt~~l~~~gvtaIayETV~~~~g~lPlLaPMSeVAGrla~q~Ga~~l 149 (371)
T COG0686 74 VKEPLPSEYPYLREGQILFTYLHL----AASPELTEALLKSGVTAIAYETVQLPDGNLPLLAPMSEVAGRLAAQAGAYYL 149 (371)
T ss_pred ecCCChhhhhhhcCCcEEEEEeee----cCChHHHHHHHHcCcceEEEEEEEcCCCCCcccchHHHHhhhHHHHHHHHHH
Confidence 999998875 689999999886 468999999999999999999999887653 68999999999999988887
Q ss_pred hHhhhhcCCCCCccccccccccccHHHHHHHHHhhchhhhccCCCCCCCCeEEEEEccchhHHHHHHHHhhCCCceecCC
Q 001559 156 GQRYLSLGYSTPFLSLGASYMYSSLAAAKAAVISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPS 235 (1053)
Q Consensus 156 ~~~~l~~g~~tpf~~~~~~~~y~~~~~~~~a~~~~g~~i~~~g~p~~~~p~~v~i~G~G~vg~gA~~~~~~LGa~~V~~~ 235 (1053)
.+. ..|+++.++|+| ++.|.+|+|+|.|+||..|..+|-.|||+ |+..
T Consensus 150 ek~------------------------------~GG~GvllgGvp-GV~~~kv~iiGGGvvgtnaAkiA~glgA~-Vtil 197 (371)
T COG0686 150 EKT------------------------------NGGKGVLLGGVP-GVLPAKVVVLGGGVVGTNAAKIAIGLGAD-VTIL 197 (371)
T ss_pred Hhc------------------------------cCCceeEecCCC-CCCCccEEEECCccccchHHHHHhccCCe-eEEE
Confidence 654 138899999999 89999999999999999999999999997 7776
Q ss_pred Cch--hhhhcccccCCCCcccceEEEeeeecccccccccCCCCCccccccccCccCcCcchhhhccCCCcEEEEcccc-c
Q 001559 236 RLP--ELFGKAKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAPYASVIVNCMYW-E 312 (1053)
Q Consensus 236 dl~--~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~f~~~~~~~~DilIn~a~~-g 312 (1053)
|+. .+.+- + ..|+ ..-..++.++.+. ++.++.+|+||+++++ |
T Consensus 198 d~n~~rl~~l-------d-----d~f~-----------------~rv~~~~st~~~i-----ee~v~~aDlvIgaVLIpg 243 (371)
T COG0686 198 DLNIDRLRQL-------D-----DLFG-----------------GRVHTLYSTPSNI-----EEAVKKADLVIGAVLIPG 243 (371)
T ss_pred ecCHHHHhhh-------h-----HhhC-----------------ceeEEEEcCHHHH-----HHHhhhccEEEEEEEecC
Confidence 642 22210 0 0111 1112444555433 5667789999999999 9
Q ss_pred CCCCcccCHHHHHHhhcCCCCceEEEEEeecCCCceeeecccccccCCeEEeCCCCCCcCCCCCCCCeEEEecCChhhHH
Q 001559 313 QRFPRLLSTQQLQDLVRKGCPLVGISDITCDIGGSLEFVNRTTSIDSSFFRYDPLSDSYHDDLEGNGLVCQAVDTLPTEF 392 (1053)
Q Consensus 313 ~~~P~Lit~~~v~~m~k~~~~gsvIvDis~D~gG~iE~t~~~tti~~P~~~~~~~~~~~~~~~~~~gV~i~~vdnLPs~l 392 (1053)
.++|+|+|++|+++| | |||||+|||||+||+||+ +++||+++|+|..+ ||.||||.|+|+.+
T Consensus 244 akaPkLvt~e~vk~M-k---pGsVivDVAiDqGGc~Et-~~~TTh~~PtY~~~-------------gvvhY~VaNmPgaV 305 (371)
T COG0686 244 AKAPKLVTREMVKQM-K---PGSVIVDVAIDQGGCFET-SHPTTHDDPTYEVD-------------GVVHYGVANMPGAV 305 (371)
T ss_pred CCCceehhHHHHHhc-C---CCcEEEEEEEcCCCceec-cccccCCCCceeec-------------CEEEEecCCCCccc
Confidence 999999999999996 6 899999999999999997 59999999999976 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCC--cCCHHHHhhhhhcCCeecCC
Q 001559 393 AKEASQHFGDILLEFIGSLSSTVDFT--ELPSHLRRACIAHGGALTTL 438 (1053)
Q Consensus 393 p~~AS~~fs~~l~~~l~~l~~~~~~~--~~~~~l~~a~i~~~G~lt~~ 438 (1053)
||+||+.++|..+||+..+++.+..+ .-|+.|++++.+++|++|++
T Consensus 306 prTst~AL~nat~py~l~la~~G~~~a~~~n~~l~~Gln~~~G~vt~~ 353 (371)
T COG0686 306 PRTSTQALTNATLPYILQLADKGLLKALKDNPALAKGLNTYNGKVTNE 353 (371)
T ss_pred cchhHHHhhhcchHHHHHHhcchHHHHhhcCHHHhccchhhcceeccH
Confidence 99999999999999999999886433 44889999999999999975
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-58 Score=526.67 Aligned_cols=339 Identities=21% Similarity=0.269 Sum_probs=283.3
Q ss_pred eEEEEeeccCCCCCcceecChHHHHHHHhcCCCCcceeEEEEcCCC--CCCCCChhHhhCCcEEccCCC---cCCEEEee
Q 001559 7 GVVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPST--KRIHHDVLYEDVGCQISEDLS---ECGLVLGI 81 (1053)
Q Consensus 7 ~~IGi~~E~~~~~ErRv~ltP~~v~~L~~~G~~~~~~~~V~VE~~a--~~~f~D~~Y~~aGA~i~~~~~---~adiIl~V 81 (1053)
|+|||+||++ ++||||||||++|++|++.| |+|+||+|+ .++|+|++|++|||+|+++.+ +||||++|
T Consensus 1 m~igi~~E~~-~~E~Rval~P~~v~~l~~~g------~~v~vE~gaG~~~~~~D~~Y~~aGa~i~~~~~~~~~~dii~~V 73 (370)
T TIGR00518 1 MRIGVPKEIK-NNEFRVALTPAGVAELTSRG------HEVLVEAGAGEGSGFTDAAYKAAGAELVATAKQVWDAELVLKV 73 (370)
T ss_pred CEEEEEccCC-CCCceecCCHHHHHHHHhCC------CEEEEECCCCcCCCCChHHHHHCCCEEecCHHHHhcCCEEEEe
Confidence 5899999999 79999999999999999999 999999998 899999999999999987643 59999999
Q ss_pred cCCCcccc---CCCCeEEEEcccccccCCCHHHHHHHHHcCCcEEEeccccCCCCc-c-cchHHHHHHHHHHHHHHHHhh
Q 001559 82 KQPKLEMI---LPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYELIVGDNGR-R-LLAFGKFAGRAGMIDFLHGLG 156 (1053)
Q Consensus 82 k~p~~~~l---~~~~t~i~fsh~~k~q~~n~~ll~~l~~k~it~i~~E~i~~~~~~-~-l~~fg~~AG~ag~~~al~~l~ 156 (1053)
|+|..+++ .+++++++|.|+. .|++++++++++++|+|+||.|++.++. + +++|+++|||.+++.+.+.|.
T Consensus 74 k~p~~~~~~~~~~g~~l~~~~~~a----~~~~~~~~l~~~~~t~i~~e~i~~~~~~~~~l~~~~~iaG~~av~~aa~~~~ 149 (370)
T TIGR00518 74 KEPLPEEYGYLRHGQILFTYLHLA----AERALTDALLDSGTTAIAYETVQTADGALPLLAPMSEVAGRLAAQVGAYHLE 149 (370)
T ss_pred CCCCHHHHhhcCCCcEEEEEeccC----CCHHHHHHHHHcCCeEEEeeeeeccCCCCccccchhHHHHHHHHHHHHHHhH
Confidence 99987754 6889998888864 5899999999999999999999988754 3 689999999999999999998
Q ss_pred HhhhhcCCCCCccccccccccccHHHHHHHHHhhchhhhccCCCCCCCCeEEEEEccchhHHHHHHHHhhCCCceecCCC
Q 001559 157 QRYLSLGYSTPFLSLGASYMYSSLAAAKAAVISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSR 236 (1053)
Q Consensus 157 ~~~l~~g~~tpf~~~~~~~~y~~~~~~~~a~~~~g~~i~~~g~p~~~~p~~v~i~G~G~vg~gA~~~~~~LGa~~V~~~d 236 (1053)
+.+. |+++...|++ +++|.+++|+|+|++|++|+++++++|++ |.+.|
T Consensus 150 ~~~~------------------------------g~~~~~~~~~-~l~~~~VlViGaG~vG~~aa~~a~~lGa~-V~v~d 197 (370)
T TIGR00518 150 KTQG------------------------------GRGVLLGGVP-GVEPGDVTIIGGGVVGTNAAKMANGLGAT-VTILD 197 (370)
T ss_pred hhcC------------------------------CcceeecCCC-CCCCceEEEEcCCHHHHHHHHHHHHCCCe-EEEEE
Confidence 7543 4445555665 77899999999999999999999999996 77766
Q ss_pred chhhh-hcccccCCCCcccceEEEeeeecccccccccCCCCCccccccccCccCcCcchhhhccCCCcEEEEcccc-cCC
Q 001559 237 LPELF-GKAKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAPYASVIVNCMYW-EQR 314 (1053)
Q Consensus 237 l~~~~-~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~f~~~~~~~~DilIn~a~~-g~~ 314 (1053)
.+... +++. ..++..+. ..+.+++ .+ .+.++.+||||||+.| +.+
T Consensus 198 ~~~~~~~~l~-----------~~~g~~v~-----------------~~~~~~~----~l-~~~l~~aDvVI~a~~~~g~~ 244 (370)
T TIGR00518 198 INIDRLRQLD-----------AEFGGRIH-----------------TRYSNAY----EI-EDAVKRADLLIGAVLIPGAK 244 (370)
T ss_pred CCHHHHHHHH-----------HhcCceeE-----------------eccCCHH----HH-HHHHccCCEEEEccccCCCC
Confidence 43211 1000 01111100 0011111 12 4556789999999999 899
Q ss_pred CCcccCHHHHHHhhcCCCCceEEEEEeecCCCceeeecccccccCCeEEeCCCCCCcCCCCCCCCeEEEecCChhhHHHH
Q 001559 315 FPRLLSTQQLQDLVRKGCPLVGISDITCDIGGSLEFVNRTTSIDSSFFRYDPLSDSYHDDLEGNGLVCQAVDTLPTEFAK 394 (1053)
Q Consensus 315 ~P~Lit~~~v~~m~k~~~~gsvIvDis~D~gG~iE~t~~~tti~~P~~~~~~~~~~~~~~~~~~gV~i~~vdnLPs~lp~ 394 (1053)
.|.||++++++.| + |+++|+||+||+|||||+ .++||+++|+|.++ ||+|||+||||+.||+
T Consensus 245 ~p~lit~~~l~~m-k---~g~vIvDva~d~GG~~e~-~~~t~~d~p~~~~~-------------Gv~~~~v~nlP~~~p~ 306 (370)
T TIGR00518 245 APKLVSNSLVAQM-K---PGAVIVDVAIDQGGCVET-SRPTTHDQPTYAVH-------------DVVHYCVANMPGAVPK 306 (370)
T ss_pred CCcCcCHHHHhcC-C---CCCEEEEEecCCCCCccC-CcCCCCCCCEEEEC-------------CeEEEEeCCcccccHH
Confidence 9999999999996 5 789999999999999996 67999999999864 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCC-cC-CHHHHhhhhhcCCeecCCC
Q 001559 395 EASQHFGDILLEFIGSLSSTVDFT-EL-PSHLRRACIAHGGALTTLY 439 (1053)
Q Consensus 395 ~AS~~fs~~l~~~l~~l~~~~~~~-~~-~~~l~~a~i~~~G~lt~~~ 439 (1053)
+||++||++|+|||..|++++... ++ |++|+++|++++|++|++.
T Consensus 307 ~aS~~~~~~l~~~l~~~~~~g~~~~~~~d~~~~~~~~~~~G~~~~~~ 353 (370)
T TIGR00518 307 TSTYALTNATMPYVLELANHGWRAACRSNPALAKGLNTHEGALLSEA 353 (370)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccChHHhcCeEEeCCEEcCHH
Confidence 999999999999999999766444 44 8999999999999999874
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-58 Score=492.59 Aligned_cols=343 Identities=18% Similarity=0.264 Sum_probs=295.6
Q ss_pred EEEEeeccCCCCCcceecChHHHHHHHhcCCCCcceeEEEEcCCC--CCCCCChhHhhCCcEEccC--CCcCCEEEeecC
Q 001559 8 VVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPST--KRIHHDVLYEDVGCQISED--LSECGLVLGIKQ 83 (1053)
Q Consensus 8 ~IGi~~E~~~~~ErRv~ltP~~v~~L~~~G~~~~~~~~V~VE~~a--~~~f~D~~Y~~aGA~i~~~--~~~adiIl~Vk~ 83 (1053)
+|||+||+. .+|+||++||+.|++|+++| |.|.||+|+ .+.|+|++|+++||+|.+. ..++|+|+||.+
T Consensus 1 ~igvp~E~~-~~E~Rva~tP~tv~~l~~~G------~~v~ve~gaG~~a~~~D~~y~aaGa~i~~~~~~~~adiilKv~~ 73 (356)
T COG3288 1 RIGVPKESL-ANETRVAATPETVKKLVKLG------FDVVVESGAGLRASFPDAAYVAAGATIGAADAVWQADIILKVRA 73 (356)
T ss_pred Ccccccccc-CCCceeecCHHHHHHHHhCC------cEEEEecCCccccCCChHHHHHhccEeehhhhhccCCeeeeecC
Confidence 489999999 99999999999999999999 999999999 7999999999999999842 246999999999
Q ss_pred CCcccc---CCCCeEEEEcccccccCCCHHHHHHHHHcCCcEEEeccccCC---CCcc-cchHHHHHHHHHHHHHHHHhh
Q 001559 84 PKLEMI---LPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYELIVGD---NGRR-LLAFGKFAGRAGMIDFLHGLG 156 (1053)
Q Consensus 84 p~~~~l---~~~~t~i~fsh~~k~q~~n~~ll~~l~~k~it~i~~E~i~~~---~~~~-l~~fg~~AG~ag~~~al~~l~ 156 (1053)
|...|+ .++.+.+.|.+++ .|.+++.+|..++++.|.+|.+|+. |.++ |+|+.+.+||..++.++++|+
T Consensus 74 p~a~e~~~~~~ga~lv~~l~p~----~~~~~v~~La~~~La~fag~~Vpr~vraqlhdpLsS~aNaigy~aVi~Aa~a~~ 149 (356)
T COG3288 74 PSAAEIALLKEGATLVSFLNPY----QNDELVFALAIFVLAAFAGEAVPRIVRAQLHDPLSSQANAIGYIAVIGAALAYG 149 (356)
T ss_pred CchhhhhhcccchhhhhhcCcc----cChHHHHHHHHHHHHHHHHhhhccccchhhccHHHhhhhhhhHHHHHHHHHHhh
Confidence 987765 5788888887764 6899999999999999999999986 5665 899999999999999999999
Q ss_pred HhhhhcCCCCCccccccccccccHHHHHHHHHhhchhhhccCCCCCCCCeEEEEEccchhHHHHHHHHhhCCCceecCCC
Q 001559 157 QRYLSLGYSTPFLSLGASYMYSSLAAAKAAVISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSR 236 (1053)
Q Consensus 157 ~~~l~~g~~tpf~~~~~~~~y~~~~~~~~a~~~~g~~i~~~g~p~~~~p~~v~i~G~G~vg~gA~~~~~~LGa~~V~~~d 236 (1053)
++|.+ ++|| +| +++|.+++++|.|++|++|+.+++++|+. |+..|
T Consensus 150 rffpm---------------------~~TA----------ag---tv~pA~vlv~G~Gvagl~aiata~~lG~i-Vt~rd 194 (356)
T COG3288 150 RFFPM---------------------QITA----------AG---TVSPAKVLVIGAGVAGLAAIATAVRLGAI-VTARD 194 (356)
T ss_pred hcccc---------------------hhhh----------cc---cccchhhhhhhHHHHHHHHHHHHhhcceE-Eehhh
Confidence 87543 4444 34 77899999999999999999999999995 99999
Q ss_pred chhhhhcccccCCCCcccceEEEeeeecccccccccCCCCCccccccccCccCcCcchhhhccCCCcEEEEcccc-cCCC
Q 001559 237 LPELFGKAKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAPYASVIVNCMYW-EQRF 315 (1053)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~f~~~~~~~~DilIn~a~~-g~~~ 315 (1053)
+|-..++ | .++.|.++...+ .+ ++.++|+|+++.++.+.++..| .++++..||||+||++ |+++
T Consensus 195 lrm~~Ke---q--------v~s~Ga~f~~~~-~e--e~~gGYAk~ms~~~~~~q~~~~-a~~~~~~DivITTAlIPGrpA 259 (356)
T COG3288 195 LRMFKKE---Q--------VESLGAKFLAVE-DE--ESAGGYAKEMSEEFIAKQAELV-AEQAKEVDIVITTALIPGRPA 259 (356)
T ss_pred hhhHHhh---h--------hhhccccccccc-cc--ccCCCccccCCHHHHHHHHHHH-HHHhcCCCEEEEecccCCCCC
Confidence 9855532 1 245677776665 22 2468999987777766667778 5667788999999999 9999
Q ss_pred CcccCHHHHHHhhcCCCCceEEEEEeecCCCceeeecccccccCCeEEeCCCCCCcCCCCCCCCeEEEecCChhhHHHHH
Q 001559 316 PRLLSTQQLQDLVRKGCPLVGISDITCDIGGSLEFVNRTTSIDSSFFRYDPLSDSYHDDLEGNGLVCQAVDTLPTEFAKE 395 (1053)
Q Consensus 316 P~Lit~~~v~~m~k~~~~gsvIvDis~D~gG~iE~t~~~tti~~P~~~~~~~~~~~~~~~~~~gV~i~~vdnLPs~lp~~ 395 (1053)
|+|||++||++| | |||||||+++.+|||||+|.++.++ ..|||+|+|..|||+.||.+
T Consensus 260 P~Lvt~~mv~sM-k---pGSViVDlAa~~GGNce~t~pg~~v------------------~~~gV~iig~~nlp~r~a~~ 317 (356)
T COG3288 260 PKLVTAEMVASM-K---PGSVIVDLAAETGGNCELTEPGKVV------------------TKNGVKIIGYTNLPGRLAAQ 317 (356)
T ss_pred chhhHHHHHHhc-C---CCcEEEEehhhcCCCcccccCCeEE------------------EeCCeEEEeecCcchhhhhh
Confidence 999999999996 6 8999999999999999998766443 24799999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcC-CHHHHhhhhhcCCe
Q 001559 396 ASQHFGDILLEFIGSLSSTVDFTEL-PSHLRRACIAHGGA 434 (1053)
Q Consensus 396 AS~~fs~~l~~~l~~l~~~~~~~~~-~~~l~~a~i~~~G~ 434 (1053)
||++|++||++||+.|++++... + |++++.+|+|++|+
T Consensus 318 aS~LYa~Nl~~~l~ll~~~~~~~-~~D~vv~~~~vt~~g~ 356 (356)
T COG3288 318 ASQLYATNLVNLLKLLCKKKDAI-FDDEVVRAVTVTRDGE 356 (356)
T ss_pred HHHHHHHHHHHHHHHHhccCCCc-chHHHHhhheeecCCC
Confidence 99999999999999998876533 5 78899999999995
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-57 Score=527.62 Aligned_cols=355 Identities=19% Similarity=0.282 Sum_probs=286.3
Q ss_pred eEEEEeeccCCCCCcceecChHHHHHHHhcCCCCcceeEEEEcCCC--CCCCCChhHhhCCcEEccC--CCcCCEEEeec
Q 001559 7 GVVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPST--KRIHHDVLYEDVGCQISED--LSECGLVLGIK 82 (1053)
Q Consensus 7 ~~IGi~~E~~~~~ErRv~ltP~~v~~L~~~G~~~~~~~~V~VE~~a--~~~f~D~~Y~~aGA~i~~~--~~~adiIl~Vk 82 (1053)
|+|||+||++ +|||||||||++|++|+++| |+|+||+|+ .++|+|++|++|||+|+++ +.+||||+|||
T Consensus 1 m~IGipkE~~-~~E~RValtP~~v~~L~~~G------~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~v~~~diilkV~ 73 (509)
T PRK09424 1 MRIGIPRERL-PGETRVAATPKTVEQLLKLG------FEVVVESGAGQLASFDDAAYREAGAEIVDGAAVWQSDIILKVN 73 (509)
T ss_pred CeEEEecCCC-CCCeEeccCHHHHHHHHHCC------CEEEEeCCCCcCCCCCHHHHHHCCCEEecCcccccCCEEEEeC
Confidence 6899999999 99999999999999999999 999999998 7999999999999999875 33699999999
Q ss_pred CCCcccc---CCCCeEEEEcccccccCCCHHHHHHHHHcCCcEEEeccccCC---CCcc-cchHHHHHHHHHHHHHHHHh
Q 001559 83 QPKLEMI---LPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYELIVGD---NGRR-LLAFGKFAGRAGMIDFLHGL 155 (1053)
Q Consensus 83 ~p~~~~l---~~~~t~i~fsh~~k~q~~n~~ll~~l~~k~it~i~~E~i~~~---~~~~-l~~fg~~AG~ag~~~al~~l 155 (1053)
+|+++|+ ++|+++++|.|+. +|++++++|+++|+|+|+||+|||. |.++ +++|+++|||.+++++.+.+
T Consensus 74 ~P~~~e~~~l~~g~~li~~l~p~----~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAGy~Av~~aa~~~ 149 (509)
T PRK09424 74 APSDDEIALLREGATLVSFIWPA----QNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAGYRAVIEAAHEF 149 (509)
T ss_pred CCCHHHHHhcCCCCEEEEEeCcc----cCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhHHHHHHHHHHHh
Confidence 9998654 7999999999974 6899999999999999999999973 5555 68999999999999999999
Q ss_pred hHhhhhcCCCCCccccccccccccHHHHHHHHHhhchhhhccCCCCCCCCeEEEEEccchhHHHHHHHHhhCCCceecCC
Q 001559 156 GQRYLSLGYSTPFLSLGASYMYSSLAAAKAAVISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPS 235 (1053)
Q Consensus 156 ~~~~l~~g~~tpf~~~~~~~~y~~~~~~~~a~~~~g~~i~~~g~p~~~~p~~v~i~G~G~vg~gA~~~~~~LGa~~V~~~ 235 (1053)
++.+.+ ..++++ .++|.+|+|+|+|++|++|+.+|+++||+ |.+.
T Consensus 150 ~~~~~g------------------------------~~taaG----~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~-V~a~ 194 (509)
T PRK09424 150 GRFFTG------------------------------QITAAG----KVPPAKVLVIGAGVAGLAAIGAAGSLGAI-VRAF 194 (509)
T ss_pred cccCCC------------------------------ceeccC----CcCCCEEEEECCcHHHHHHHHHHHHCCCE-EEEE
Confidence 986432 122222 45689999999999999999999999996 8888
Q ss_pred CchhhhhcccccCCCCcccceEEEeeeecccccccccCCCCCccccccccCccCcCcchhhhccCCCcEEEEcccc-cCC
Q 001559 236 RLPELFGKAKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAPYASVIVNCMYW-EQR 314 (1053)
Q Consensus 236 dl~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~f~~~~~~~~DilIn~a~~-g~~ 314 (1053)
|++....+. -+.+|+.+...+..+.....++|.++......+..+..| .+.++.+||+|+|+.| +++
T Consensus 195 D~~~~rle~-----------aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~-~~~~~gaDVVIetag~pg~~ 262 (509)
T PRK09424 195 DTRPEVAEQ-----------VESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF-AEQAKEVDIIITTALIPGKP 262 (509)
T ss_pred eCCHHHHHH-----------HHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH-HhccCCCCEEEECCCCCccc
Confidence 875332210 023555533222222222345777764332222223344 4455679999999999 999
Q ss_pred CCcccCHHHHHHhhcCCCCceEEEEEeecCCCceeeecccccccCCeEEeCCCCCCcCCCCCCCCeEEEecCChhhHHHH
Q 001559 315 FPRLLSTQQLQDLVRKGCPLVGISDITCDIGGSLEFVNRTTSIDSSFFRYDPLSDSYHDDLEGNGLVCQAVDTLPTEFAK 394 (1053)
Q Consensus 315 ~P~Lit~~~v~~m~k~~~~gsvIvDis~D~gG~iE~t~~~tti~~P~~~~~~~~~~~~~~~~~~gV~i~~vdnLPs~lp~ 394 (1053)
+|++|++++++.| | ||++|+|++||+|||||++.+ .+|++.. +||+|+|++|+|+++|+
T Consensus 263 aP~lit~~~v~~m-k---pGgvIVdvg~~~GG~~e~t~~----~~~v~~~-------------~gVti~Gv~n~P~~~p~ 321 (509)
T PRK09424 263 APKLITAEMVASM-K---PGSVIVDLAAENGGNCELTVP----GEVVVTD-------------NGVTIIGYTDLPSRLPT 321 (509)
T ss_pred CcchHHHHHHHhc-C---CCCEEEEEccCCCCCcccccC----ccceEeE-------------CCEEEEEeCCCchhHHH
Confidence 9999999999996 5 899999999999999998553 2455532 48999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhc--CCCCC-cC-CHHHHhhhhhcCCeecCCCC
Q 001559 395 EASQHFGDILLEFIGSLSS--TVDFT-EL-PSHLRRACIAHGGALTTLYE 440 (1053)
Q Consensus 395 ~AS~~fs~~l~~~l~~l~~--~~~~~-~~-~~~l~~a~i~~~G~lt~~~~ 440 (1053)
+||++|++++++++..+.. ++.+. ++ |+++++++++++|+++++..
T Consensus 322 ~As~lla~~~i~l~~lIt~~~~g~~~~~~~d~vi~~~~~~~~G~i~~~~~ 371 (509)
T PRK09424 322 QSSQLYGTNLVNLLKLLCPEKDGNIVVDFDDVVIRGVTVVRDGEITWPPP 371 (509)
T ss_pred HHHHHHHhCCccHHHHhccCccchhhhcccCHHHhcCeEEECCEEecCCC
Confidence 9999999999999988762 33333 65 88999999999999999753
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-55 Score=493.21 Aligned_cols=374 Identities=30% Similarity=0.382 Sum_probs=325.7
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC-CCceEEEecCCCHHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI-PNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~-~~~~~~~~d~~d~~~ 652 (1053)
+++|+|||+|++|+.+|..|+++++ .+|+|+||+.++++++.+.. +++++.++|+.|.+.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d-------------------~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~a 61 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGD-------------------GEVTIADRSKEKCARIAELIGGKVEALQVDAADVDA 61 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCC-------------------ceEEEEeCCHHHHHHHHhhccccceeEEecccChHH
Confidence 5789999999999999999999873 48999999999999997763 578999999999999
Q ss_pred HHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeeccChhHHHHHHHHHHcCCeEEecCCCChhHHHHHHHHHHHHh
Q 001559 653 LCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMINHA 732 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla~~~i~~~ 732 (1053)
+.++|++.|+||||+|++.+..++++|+++|+||+|+||..+...++++.|+++|++++++||+|||++|+++.+++++.
T Consensus 62 l~~li~~~d~VIn~~p~~~~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~~Agit~v~~~G~dPGi~nv~a~~a~~~~ 141 (389)
T COG1748 62 LVALIKDFDLVINAAPPFVDLTILKACIKTGVDYVDTSYYEEPPWKLDEEAKKAGITAVLGCGFDPGITNVLAAYAAKEL 141 (389)
T ss_pred HHHHHhcCCEEEEeCCchhhHHHHHHHHHhCCCEEEcccCCchhhhhhHHHHHcCeEEEcccCcCcchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999877666899999999999999999999999999999998876
Q ss_pred hhccCceEEEEeeccCCCCCCCCCCccccccccCHHHHHHhccCCceEEECCEEEEecCCCccccceEEEecCCCcceee
Q 001559 733 HVRKGKIKSFTSYCGGLPSPAAANNPLAYKFSWSPAGAIRAGRNPAIYLFNGKTVQVDGDSLYDSAEKFRIADLPAFALE 812 (1053)
Q Consensus 733 ~~~~~~v~sf~~~~Gg~p~p~~~~~pl~yk~swsp~~~l~~~~~pa~~~~~G~~~~v~~~~~~~~~~~~~~p~~~~~~le 812 (1053)
. ++++++.+|||++|.+ .+||++|+++|||+++|++|.+|+++|+||+|++|++++.. +.++||..+-...+
T Consensus 142 ~---~~i~si~iy~g~~g~~--~~~~l~ya~tws~e~~l~e~~~p~~~~~~Gk~~~v~~~~~~---~~~~~~~~G~~~~y 213 (389)
T COG1748 142 F---DEIESIDIYVGGLGEH--GDNPLGYATTWSPEINLREYTRPARYWENGKWVEVDPLEER---EVFEFPVIGYGDVY 213 (389)
T ss_pred h---ccccEEEEEEecCCCC--CCCCccceeeecHHHhHHHhcCceEEEeCCEEEEecCcccc---cccccCCCCceeEE
Confidence 4 3799999999999965 48999999999999999999999999999999999998876 46677766655667
Q ss_pred cccCCCccccccccCcCcCccccceeeeecccHHHHHHHHHHcCCCCCCCcccccCCCCCCHHHHHHHHhhcccccCCCC
Q 001559 813 CLPNRNSLVYGDIYGIGKEASTIFRGTLRYEGFGEIMGTLGRIGFFSAETHPVLKQGSGPTFRMFLCEILKMDSQKMGEA 892 (1053)
Q Consensus 813 ~~~n~dsl~~~~~ygi~~~~~~l~r~TlRy~G~~~~~~~l~~lGLl~~~~~~~~~~g~~~s~~~~~~~~l~~~~~~~~~~ 892 (1053)
++++.+...+.+. +++..++++++|+||+||.+.|++|++|||++.+|+++. +.++|++|++++|+.
T Consensus 214 ~~~~~el~sL~~~--i~~~~~~~~~~t~r~~g~~~~i~~L~~lGll~~~~v~~~---~~i~p~eflk~vl~~-------- 280 (389)
T COG1748 214 AFYHDELRSLVKT--IPGVVRTRFEMTFRYPGHLEVIKALRDLGLLSREPVKVQ---QEIVPLEFLKAVLPD-------- 280 (389)
T ss_pred ecCCccHHHHHHh--CcccceeeEEeecCcccHHHHHHHHHHcCCCcccccccc---cccchHHHHHHhccc--------
Confidence 7776554444443 423579999999999999999999999999999997653 788888888887642
Q ss_pred CCChHHHHHHHHhcCccchhhhHHHHHHHHHhhccccCcccCCCCCChhHHhHHHHHHhhcCCCCCCceEEEEEEEEEEc
Q 001559 893 PLGEKEITERILSLGHCKERETASKAAKTIIFLGLHEQTEIPASCESPFSVTCLLMEEKLAYSSTEEDMVLLHHEVEVEF 972 (1053)
Q Consensus 893 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~p~~~~~~~L~~kl~~~p~e~D~v~m~~~v~~~~ 972 (1053)
++++.|+..|.+++.++++|.
T Consensus 281 ----------------------------------------------------------~~s~~~~~~d~t~i~v~v~G~- 301 (389)
T COG1748 281 ----------------------------------------------------------PLSLAPDYKDVTVIGVEVKGT- 301 (389)
T ss_pred ----------------------------------------------------------ccccCCCcCceEEEEEEEEEE-
Confidence 345788899999999999996
Q ss_pred CCCeeeeeEEEEEEEeccccCCCcccchhhhhhHHHHHHHHHHHcCccCCCceecccCCCccHHHHHHHHhCCCEE
Q 001559 973 PDGQPSENNRATLLEFGKMKNGKMISAMALTVGIPAGIAAMLLLVNKIKTRGVLRPIEPEVYVPALDMLQAYGIKL 1048 (1053)
Q Consensus 973 ~~g~~~~~~~~tl~~~g~~~~~~~~tAMa~ttG~p~aiaA~lil~g~i~~~GV~~P~~~~~y~p~L~~L~~~GI~~ 1048 (1053)
+||+. +++.+...+|...+.+.+.|+|+.|||.|++++|+++++|+|..+||+.||...+ .+++..+-.+|+.+
T Consensus 302 kdG~~-~~~~y~~~~~~~~~~~~~~~ais~ttg~pa~~~a~ll~~g~~~~~Gv~~~E~l~~-~~~~~~~~~~~l~~ 375 (389)
T COG1748 302 KDGRD-KTVFYNVKDHAEAYSEVGSSAISYTTGVPAAIGAELLAEGEWETPGVVNPEELGP-DPFLEKLLIRGLPW 375 (389)
T ss_pred EcCee-eEEEecchhhHHHhhccccceeehhccccHHHHHHHHHcCCCCcCcEecHHHhCC-ChhHHHHhhccCcc
Confidence 99988 5555555566555566789999999999999999999999999999999998776 67788888887654
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-52 Score=486.32 Aligned_cols=377 Identities=37% Similarity=0.513 Sum_probs=318.0
Q ss_pred EEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhc--CCCceEEEecCCCHHHHH
Q 001559 577 VLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEG--IPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 577 VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~--~~~~~~~~~d~~d~~~l~ 654 (1053)
|+|||+|.+|+.++++|++++.+ .+|+|++|+.++++++++. ..+++.+++|+.|.++|.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~------------------~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 62 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPF------------------EEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLA 62 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-------------------EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCC------------------CcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHH
Confidence 78999999999999999998732 2899999999999999875 346899999999999999
Q ss_pred HhhccccEEEecCCccccHHHHHHHHHhCCeEEEeeccChhHHHHHHHHHHcCCeEEecCCCChhHHHHHHHHHHHHhhh
Q 001559 655 KCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMINHAHV 734 (1053)
Q Consensus 655 ~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla~~~i~~~~~ 734 (1053)
++++++|+||||+|++.+..++++|+++|+||+|.+|....+.+|+++|+++|++++.+||++||++|+++++++++++.
T Consensus 63 ~~~~~~dvVin~~gp~~~~~v~~~~i~~g~~yvD~~~~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~~~~a~~~~~~~~~ 142 (386)
T PF03435_consen 63 ELLRGCDVVINCAGPFFGEPVARACIEAGVHYVDTSYVTEEMLALDEEAKEAGVTALPGCGFDPGLSNLLARYAADELDA 142 (386)
T ss_dssp HHHTTSSEEEE-SSGGGHHHHHHHHHHHT-EEEESS-HHHHHHHCHHHHHHTTSEEE-S-BTTTBHHHHHHHHHHHHHHH
T ss_pred HHHhcCCEEEECCccchhHHHHHHHHHhCCCeeccchhHHHHHHHHHHHHhhCCEEEeCcccccchHHHHHHHHHHHhhh
Confidence 99999999999999989999999999999999999887788899999999999999999999999999999999999976
Q ss_pred ccCceEEEEeeccCCCCCCCCCCccccccccCHHHHHHhccCCceEEECCEEEEecCCCccccceEEEecC--CCcceee
Q 001559 735 RKGKIKSFTSYCGGLPSPAAANNPLAYKFSWSPAGAIRAGRNPAIYLFNGKTVQVDGDSLYDSAEKFRIAD--LPAFALE 812 (1053)
Q Consensus 735 ~~~~v~sf~~~~Gg~p~p~~~~~pl~yk~swsp~~~l~~~~~pa~~~~~G~~~~v~~~~~~~~~~~~~~p~--~~~~~le 812 (1053)
..+++++|.+|||+.|.|+.+++|++|+++|||++++.++.+|+++++||+++++++.+.. +.++||. .++..++
T Consensus 143 ~~~~v~~~~~~~g~~~~p~~~~~~~~~~~~ws~~~~l~e~~~~~~~~~~G~~~~v~~~~~~---~~~~f~~~~~~~~~~~ 219 (386)
T PF03435_consen 143 EGDEVESVDIYVGGLPAPEAPDNPLGYKFTWSPEGVLEEYSPPARVYRDGKWVEVPPFSEE---ERVDFPYPIGPGGAYE 219 (386)
T ss_dssp TTHEEEEEEEEEEEEEEGCG--TTTSEEBSS-HHHHHHHHCS-EEEEETTEEEEEETTTTC---CCETEEE-SSTTECEE
T ss_pred hcccceEEEEEEccccCCCCCCCCcccceeeeehhhHHhhcccceEeeCCEEEEecCcccc---ceeeeeeEecccceee
Confidence 7778999999999998888999999999999999999999999999999999999988765 4445543 4456789
Q ss_pred cccCCCccccccccCcCcCccccceeeeecccHHHHHHHHHHcCCCCCCCcccccCCCCCCHHHHHHHHhhcccccCCCC
Q 001559 813 CLPNRNSLVYGDIYGIGKEASTIFRGTLRYEGFGEIMGTLGRIGFFSAETHPVLKQGSGPTFRMFLCEILKMDSQKMGEA 892 (1053)
Q Consensus 813 ~~~n~dsl~~~~~ygi~~~~~~l~r~TlRy~G~~~~~~~l~~lGLl~~~~~~~~~~g~~~s~~~~~~~~l~~~~~~~~~~ 892 (1053)
++++++++.+...+++ +...++.++|+||+||++.|++|+++||+++++..+.
T Consensus 220 ~~~~~~~~~~~~~~~~-~~~~~~~~~t~r~~~~~~~~~~l~~lgl~~~~~~~~~-------------------------- 272 (386)
T PF03435_consen 220 AFHPEDSTLTRSFYGL-PEVRNVIRKTLRYPGFLNVMKLLKDLGLLSEEPVYVY-------------------------- 272 (386)
T ss_dssp EEEECBGTTHHHHTT--TTTSEEEEEEEEETTHHHHHHHHHHTTTTSHCBEGGG--------------------------
T ss_pred eecCcCCceeeEeecC-CCcccEEEEEeeEhhHHHHHHHHHhhcccCCccccch--------------------------
Confidence 9999999988888887 5556999999999999999999999999998874321
Q ss_pred CCChHHHHHHHHhcCccchhhhHHHHHHHHHhhccccCcccCCCCCChhHHhHHHHHHhhcCCCCCCceEEEEEEEEEEc
Q 001559 893 PLGEKEITERILSLGHCKERETASKAAKTIIFLGLHEQTEIPASCESPFSVTCLLMEEKLAYSSTEEDMVLLHHEVEVEF 972 (1053)
Q Consensus 893 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~p~~~~~~~L~~kl~~~p~e~D~v~m~~~v~~~~ 972 (1053)
.+|.++|+++|++++.+.|+++|+++|+|+++|..
T Consensus 273 ---------------------------------------------~~p~~~l~~~l~~~~~~~~~~~d~~~~~v~v~G~~ 307 (386)
T PF03435_consen 273 ---------------------------------------------VSPRDLLAALLEKRLRPGPGERDMVVLRVEVEGWD 307 (386)
T ss_dssp ---------------------------------------------SCHHHHHHHHHHHHSCTTTT-SEEEEEEEEEEEEE
T ss_pred ---------------------------------------------hhHHHHHHhhChhhcCCcccccCceeEEEEEEEEe
Confidence 24777888888899999999999999999999977
Q ss_pred CCCeeeeeEEEEEE-EeccccCCCcccchhhhhhHHHHHHHHHHHcCccCCCceeccc---CCCccHHHHHHHHhCCCEE
Q 001559 973 PDGQPSENNRATLL-EFGKMKNGKMISAMALTVGIPAGIAAMLLLVNKIKTRGVLRPI---EPEVYVPALDMLQAYGIKL 1048 (1053)
Q Consensus 973 ~~g~~~~~~~~tl~-~~g~~~~~~~~tAMa~ttG~p~aiaA~lil~g~i~~~GV~~P~---~~~~y~p~L~~L~~~GI~~ 1048 (1053)
++|++ ...++++. .+++. .+.+.++|+++||+|+|++|+++++|++..+||++|| ++++|.++|++|+++||++
T Consensus 308 ~~G~~-~~~~~~~~~~~~~~-~~~~~~~m~~~tg~~~ai~a~ll~~g~~~~~GV~~PE~~~~~~~~~~~l~~l~~~GI~~ 385 (386)
T PF03435_consen 308 KDGKP-VRRTSYLVYPSGDP-IETGGSAMARTTGIPAAIAAQLLADGEITRPGVVPPEAAFDPDPFEDLLEELAKRGIPF 385 (386)
T ss_dssp TTCEE-EEEEEEEEEEEEEC-CCSSCHHHHHHHHHHHHHHHHHHHTTSSH-SEEE-SHHCCSHHHHHHHHHHHHHHCEEE
T ss_pred CCCCE-EEEEEeeceecccc-cCCCCCccHHHhhHHHHHHHHHHHCCCcCCCeEECHHHhCCCchHHHHHHHHHcCCCCc
Confidence 99998 66677776 44443 3567899999999999999999999999999999995 4578889999999999986
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.3e-29 Score=245.80 Aligned_cols=126 Identities=27% Similarity=0.404 Sum_probs=103.7
Q ss_pred EEeeccCCCCCcceecChHHHHHHHhcCCCCcceeEEEEcCCC--CCCCCChhHhhCCcEEccCC----CcCCEEEeecC
Q 001559 10 GILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPST--KRIHHDVLYEDVGCQISEDL----SECGLVLGIKQ 83 (1053)
Q Consensus 10 Gi~~E~~~~~ErRv~ltP~~v~~L~~~G~~~~~~~~V~VE~~a--~~~f~D~~Y~~aGA~i~~~~----~~adiIl~Vk~ 83 (1053)
||+||++ +||+||||+|++|++|++.| |+|+||+|+ +++|+|++|++|||+|+++. ++|||||+||+
T Consensus 1 Gi~kE~~-~~E~RVal~P~~v~~L~~~G------~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~ 73 (136)
T PF05222_consen 1 GIPKESK-PGERRVALTPEDVKKLVKLG------HEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKP 73 (136)
T ss_dssp EE-B--S-TT---BSS-HHHHHHHHHTT------SEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-
T ss_pred CccCcCC-CCCcEecccHHHHHHHHhCC------CEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECC
Confidence 8999988 99999999999999999999 999999999 89999999999999999753 57999999999
Q ss_pred CCcccc---CCCCeEEEEcccccccCCCHHHHHHHHHcCCcEEEeccccCC-CCcccchHHHHHHHH
Q 001559 84 PKLEMI---LPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYELIVGD-NGRRLLAFGKFAGRA 146 (1053)
Q Consensus 84 p~~~~l---~~~~t~i~fsh~~k~q~~n~~ll~~l~~k~it~i~~E~i~~~-~~~~l~~fg~~AG~a 146 (1053)
|+.+++ .+|+++++|.|++ .|+++++.|+++|+|+||||+|||+ +++++..|+++|++|
T Consensus 74 p~~~e~~~l~~g~~li~~~~~~----~~~~~~~~l~~~~it~~a~E~ipr~s~aq~md~lss~a~iA 136 (136)
T PF05222_consen 74 PSEEELALLKPGQTLIGFLHPA----QNKELLEALAKKGITAFALELIPRISRAQSMDVLSSQANIA 136 (136)
T ss_dssp --GGGGGGS-TTCEEEEE--GG----GHHHHHHHHHHCTEEEEEGGGSBSSGGGGGGTHHHHHHHHH
T ss_pred CCHHHHhhcCCCcEEEEeeccc----cCHHHHHHHHHCCCEEEEhhhCcCCcCCcCcccchhhhccC
Confidence 977654 6999999999987 4999999999999999999999996 888898999998876
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A .... |
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-29 Score=260.59 Aligned_cols=162 Identities=37% Similarity=0.608 Sum_probs=119.0
Q ss_pred chhhhccCCCCCCCCeEEEEEccchhHHHHHHHHhhCCCceecCCCchhhhhcccccCCCCcccceEEEeeeeccccccc
Q 001559 191 GEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFGKAKDQHGGASKRIFQVYGCVVTSEDMVE 270 (1053)
Q Consensus 191 g~~i~~~g~p~~~~p~~v~i~G~G~vg~gA~~~~~~LGa~~V~~~dl~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~ 270 (1053)
|..+.+.|.+.+++|++|+|+|+|+||+||+++|++||++++.+++..+..++... .+ .+.+.+...++..
T Consensus 6 g~~~~~~~~~~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~---~~------~~~i~~~~~~~~~ 76 (168)
T PF01262_consen 6 GGKGMLLGGPGGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLES---LG------AYFIEVDYEDHLE 76 (168)
T ss_dssp SSSSHEECTTTEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH---TT------TEESEETTTTTTT
T ss_pred CccceeccCCCCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhc---cc------CceEEEccccccc
Confidence 44555666677999999999999999999999999999996666554433332100 11 1224444334343
Q ss_pred ccCCCCCccccccccCccCcCcchhhhccCCCcEEEE-cccccCCCCcccCHHHHHHhhcCCCCceEEEEEeecCCCcee
Q 001559 271 HKDPTKGFDKADYYAHPEHYNPVFHKKIAPYASVIVN-CMYWEQRFPRLLSTQQLQDLVRKGCPLVGISDITCDIGGSLE 349 (1053)
Q Consensus 271 ~~~~~~~~~~~~~~~~p~~~~~~f~~~~~~~~DilIn-~a~~g~~~P~Lit~~~v~~m~k~~~~gsvIvDis~D~gG~iE 349 (1053)
++ .|++++|+++|+.|++.|++.+. .+|+||+ +.+|++++|+|||++|+++| + ||+||+|||||+|||||
T Consensus 77 ~~----~~~~~~~~~~~~~~~~~f~~~i~-~~d~vI~~~~~~~~~~P~lvt~~~~~~m-~---~gsvIvDis~D~gG~iE 147 (168)
T PF01262_consen 77 RK----DFDKADYYEHPESYESNFAEFIA-PADIVIGNGLYWGKRAPRLVTEEMVKSM-K---PGSVIVDISCDQGGSIE 147 (168)
T ss_dssp SB-----CCHHHCHHHCCHHHHHHHHHHH-H-SEEEEHHHBTTSS---SBEHHHHHTS-S---TTEEEEETTGGGT-SBT
T ss_pred cc----ccchhhhhHHHHHhHHHHHHHHh-hCcEEeeecccCCCCCCEEEEhHHhhcc-C---CCceEEEEEecCCCCcC
Confidence 33 39999999999999999966555 5698885 66679999999999999996 5 89999999999999999
Q ss_pred eecccccccCCeEEeCCCCCCcCCCCCCCCeEEEe
Q 001559 350 FVNRTTSIDSSFFRYDPLSDSYHDDLEGNGLVCQA 384 (1053)
Q Consensus 350 ~t~~~tti~~P~~~~~~~~~~~~~~~~~~gV~i~~ 384 (1053)
|+ ++||+++|+|.++ ||+|||
T Consensus 148 ~t-~~~T~~~p~~~~~-------------GV~~~~ 168 (168)
T PF01262_consen 148 TT-RPTTHADPTYEKN-------------GVTHYG 168 (168)
T ss_dssp TE-ETTBTTCEEEEET-------------TEEEEE
T ss_pred cc-ccCCCCCCeEEeC-------------CEEEEC
Confidence 85 7888999999975 999997
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.2e-28 Score=265.58 Aligned_cols=231 Identities=20% Similarity=0.213 Sum_probs=187.8
Q ss_pred ccccccccchhhhhHHHHHcCCcEEEEEEEeCCCC--------cCccccccccCCCCcchhhhhhcccccchhccCCccc
Q 001559 474 SGHLFDQFLINEALDIIEAAGGSFHLVKCQVGQST--------EALSFSELEVGADDSAVLDQIIDSLTSLANASENNRD 545 (1053)
Q Consensus 474 ~gHl~d~~~~n~Aldv~~f~~g~v~lvef~V~~~s--------~~~sl~~lnvt~p~k~~l~~~ld~~~~~a~~~g~~n~ 545 (1053)
-+||+||.+||.+ ++..|.+..|..|.|++++ +...+.++|||+|||+++++++|++|+.|+.+||||
T Consensus 16 i~HS~SP~~Hn~~---~~~lGl~~~Y~a~~v~~~~l~~~v~~~~~~g~~G~NVTiP~Ke~~~~~lD~l~~~A~~iGAVN- 91 (283)
T COG0169 16 ISHSLSPRMHNAA---FRALGLDYVYLAFEVPPEDLPEAVSGIRALGFRGLNVTIPFKEAALPLLDELSPRARLIGAVN- 91 (283)
T ss_pred cccCcCHHHHHHH---HHHcCCCceEEEeecCHHHHHHHHHHHHhcCCCeeEECCccHHHHHHHHhcCCHHHHHhCCce-
Confidence 3699999999999 9999999999999999766 678899999999999999999999999999999999
Q ss_pred cccceee-cceeeeeeeccc------ccCCC-CCCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCc
Q 001559 546 QISGINR-ISLRIGKVQETA------TQKGP-GTKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQND 617 (1053)
Q Consensus 546 ~~~~~~~-~~~~~g~~~~~~------~~~~~-~~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~ 617 (1053)
|.+++ .+++.|||||.. .+.+. ...+.++|+|+|+|+++++++..|++.| +
T Consensus 92 --Tl~~~~~g~l~G~NTD~~G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~g-~------------------ 150 (283)
T COG0169 92 --TLVREDDGKLRGYNTDGIGFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEAG-A------------------ 150 (283)
T ss_pred --EEEEccCCEEEEEcCCHHHHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHcC-C------------------
Confidence 47777 589999999771 11111 2345789999999999999999999998 2
Q ss_pred cEEEEEECCHHHHHHHHhcCCCce-EEEecCCCHHHHHHhhccccEEEecCCccccHH-----HHHHHHHhCCeEEEeec
Q 001559 618 IRVLVASLYLKDAEEVIEGIPNAE-AVQLDVSDHKSLCKCISQVEIVISLLPASCHVM-----VANACIEFKKHLVTASY 691 (1053)
Q Consensus 618 ~~v~v~~r~~~~a~~l~~~~~~~~-~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~~-----v~~aci~~g~~~vD~sy 691 (1053)
.+|+|++|+.+|++++++.++... .+... +..++... .++|+|||+||.+|... +...++..+..++|+.|
T Consensus 151 ~~i~V~NRt~~ra~~La~~~~~~~~~~~~~--~~~~~~~~-~~~dliINaTp~Gm~~~~~~~~~~~~~l~~~~~v~D~vY 227 (283)
T COG0169 151 KRITVVNRTRERAEELADLFGELGAAVEAA--ALADLEGL-EEADLLINATPVGMAGPEGDSPVPAELLPKGAIVYDVVY 227 (283)
T ss_pred CEEEEEeCCHHHHHHHHHHhhhcccccccc--cccccccc-cccCEEEECCCCCCCCCCCCCCCcHHhcCcCCEEEEecc
Confidence 389999999999999998876321 11111 11112111 17999999999998642 33578899999999999
Q ss_pred cChhHHHHHHHHHHcCCeEEecCCCChhHHHHHHHHHHHHhhhccCceEEEEeeccCCC
Q 001559 692 IDDSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMINHAHVRKGKIKSFTSYCGGLP 750 (1053)
Q Consensus 692 ~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla~~~i~~~~~~~~~v~sf~~~~Gg~p 750 (1053)
.|.+|..| +.|+++|+.+++|.| ||..|. +++|++|+|..|
T Consensus 228 ~P~~TplL-~~A~~~G~~~idGl~-------Mlv~Qa----------a~aF~lwtg~~p 268 (283)
T COG0169 228 NPLETPLL-REARAQGAKTIDGLG-------MLVHQA----------AEAFELWTGVEP 268 (283)
T ss_pred CCCCCHHH-HHHHHcCCeEECcHH-------HHHHHH----------HHHHHHHhCCCC
Confidence 99998766 799999999999999 576553 567889999865
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-27 Score=266.20 Aligned_cols=231 Identities=17% Similarity=0.216 Sum_probs=189.7
Q ss_pred cccccccchhhhhHHHHHcCCcEEEEEEEeCCCC--------cCccccccccCCCCcchhhhhhcccccchhccCCcccc
Q 001559 475 GHLFDQFLINEALDIIEAAGGSFHLVKCQVGQST--------EALSFSELEVGADDSAVLDQIIDSLTSLANASENNRDQ 546 (1053)
Q Consensus 475 gHl~d~~~~n~Aldv~~f~~g~v~lvef~V~~~s--------~~~sl~~lnvt~p~k~~l~~~ld~~~~~a~~~g~~n~~ 546 (1053)
.||+||.+||.+ ++..+.++.|..|+|.+++ +...+.++|||+|||+.+++++|++++.|+.+|+|||
T Consensus 20 ~hS~SP~ihn~~---f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~v~~~ld~~~~~A~~iGavNT- 95 (289)
T PRK12548 20 GHSGSPAMYNYS---FQKAGLDYAYLAFDIPVDKVPDAIKAIKTFNMRGANVTMPCKSEAAKYMDELSPAARIIGAVNT- 95 (289)
T ss_pred ccccCHHHHHHH---HHHcCCCEEEEEEecCHHHHHHHHHHHHHCCCCEEEECccCHHHHHHHhhcCCHHHHHhCceeE-
Confidence 499999999999 8889999999999999755 4568999999999999999999999999999999996
Q ss_pred ccceeecceeeeeeecccc------cCCCCCCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEE
Q 001559 547 ISGINRISLRIGKVQETAT------QKGPGTKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRV 620 (1053)
Q Consensus 547 ~~~~~~~~~~~g~~~~~~~------~~~~~~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v 620 (1053)
++++.++++|||||..- ..+. ..+.++++|+|+|++|++++..|++.| + .+|
T Consensus 96 --i~~~~g~l~G~NTD~~G~~~~l~~~~~-~~~~k~vlI~GAGGagrAia~~La~~G-~------------------~~V 153 (289)
T PRK12548 96 --IVNDDGKLTGHITDGLGFVRNLREHGV-DVKGKKLTVIGAGGAATAIQVQCALDG-A------------------KEI 153 (289)
T ss_pred --EEeECCEEEEEecCHHHHHHHHHhcCC-CcCCCEEEEECCcHHHHHHHHHHHHCC-C------------------CEE
Confidence 45678899999997611 1112 345688999999999999999999887 2 269
Q ss_pred EEEECCH---HHHHHHHhcC----CCceEEEecCCCHHHHHHhhccccEEEecCCccccH-----HH-HHHHHHhCCeEE
Q 001559 621 LVASLYL---KDAEEVIEGI----PNAEAVQLDVSDHKSLCKCISQVEIVISLLPASCHV-----MV-ANACIEFKKHLV 687 (1053)
Q Consensus 621 ~v~~r~~---~~a~~l~~~~----~~~~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~-----~v-~~aci~~g~~~v 687 (1053)
.|++|+. ++++++++.+ +.+....+|+++.+++.+.+..+|+|||+||.+|++ ++ ....+..+..++
T Consensus 154 ~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~ 233 (289)
T PRK12548 154 TIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILVNATLVGMKPNDGETNIKDTSVFRKDLVVA 233 (289)
T ss_pred EEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEEEeCCCCCCCCCCCCCCCcHHhcCCCCEEE
Confidence 9999996 7888877654 234456678877777888888999999999999853 22 234577788899
Q ss_pred EeeccChhHHHHHHHHHHcCCeEEecCCCChhHHHHHHHHHHHHhhhccCceEEEEeeccCC
Q 001559 688 TASYIDDSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMINHAHVRKGKIKSFTSYCGGL 749 (1053)
Q Consensus 688 D~sy~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla~~~i~~~~~~~~~v~sf~~~~Gg~ 749 (1053)
|+.|.|.+|..| +.|+++|+.+++|.+ ||..|. +.+|++|+|..
T Consensus 234 D~vY~P~~T~ll-~~A~~~G~~~~~G~~-------ML~~Qa----------~~~f~lwtg~~ 277 (289)
T PRK12548 234 DTVYNPKKTKLL-EDAEAAGCKTVGGLG-------MLLWQG----------AEAYKLYTGKD 277 (289)
T ss_pred EecCCCCCCHHH-HHHHHCCCeeeCcHH-------HHHHHH----------HHHHHHhcCCC
Confidence 999999888666 799999999999999 576654 45678899864
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-27 Score=262.14 Aligned_cols=232 Identities=16% Similarity=0.186 Sum_probs=183.2
Q ss_pred cccccccchhhhhHHHHHcCCcEEEEEEEeCCCC--------cCccccccccCCCCcchhhhhhcccccchhccCCcccc
Q 001559 475 GHLFDQFLINEALDIIEAAGGSFHLVKCQVGQST--------EALSFSELEVGADDSAVLDQIIDSLTSLANASENNRDQ 546 (1053)
Q Consensus 475 gHl~d~~~~n~Aldv~~f~~g~v~lvef~V~~~s--------~~~sl~~lnvt~p~k~~l~~~ld~~~~~a~~~g~~n~~ 546 (1053)
.||+||.+||.+ ++..+.++.|..|+|.+++ +.+.+.++|||+|||+.+++++|++++.|+.+|+|||
T Consensus 18 ~hSlSP~ihn~~---f~~~gl~~~Y~~~~v~~~~l~~~~~~l~~~~~~G~nVTiP~K~~~~~~~D~l~~~A~~iGAVNT- 93 (288)
T PRK12749 18 RHSLSPEMQNKA---LEKAGLPFTYMAFEVDNDSFPGAIEGLKALKMRGTGVSMPNKQLACEYVDELTPAAKLVGAINT- 93 (288)
T ss_pred ccccCHHHHHHH---HHHcCCCeEEEEEecCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhccCCHHHHHhCceeE-
Confidence 499999999999 8889999999999999755 5667999999999999999999999999999999996
Q ss_pred ccceeecceeeeeeecccc------cCCCCCCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEE
Q 001559 547 ISGINRISLRIGKVQETAT------QKGPGTKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRV 620 (1053)
Q Consensus 547 ~~~~~~~~~~~g~~~~~~~------~~~~~~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v 620 (1053)
++++.++++|||||..- ..+. ..+.++++|||+|+++++++..|+..| + .+|
T Consensus 94 --v~~~~g~l~G~NTD~~Gf~~~l~~~~~-~~~~k~vlvlGaGGaarAi~~~l~~~g-~------------------~~i 151 (288)
T PRK12749 94 --IVNDDGYLRGYNTDGTGHIRAIKESGF-DIKGKTMVLLGAGGASTAIGAQGAIEG-L------------------KEI 151 (288)
T ss_pred --EEccCCEEEEEecCHHHHHHHHHhcCC-CcCCCEEEEECCcHHHHHHHHHHHHCC-C------------------CEE
Confidence 45567889999997611 1222 456689999999999999999999877 2 389
Q ss_pred EEEECC---HHHHHHHHhcCCC---ceEEEecCCCHHHHHHhhccccEEEecCCccccHH------HHHHHHHhCCeEEE
Q 001559 621 LVASLY---LKDAEEVIEGIPN---AEAVQLDVSDHKSLCKCISQVEIVISLLPASCHVM------VANACIEFKKHLVT 688 (1053)
Q Consensus 621 ~v~~r~---~~~a~~l~~~~~~---~~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~~------v~~aci~~g~~~vD 688 (1053)
+|++|+ .++++++++.++. ......+..+.+.+.+.+.++|+|||+||.+|.+. .....++.+..++|
T Consensus 152 ~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDivINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D 231 (288)
T PRK12749 152 KLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTE 231 (288)
T ss_pred EEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEEEECCCCCCCCCCCCCCCCcHHHCCCCCEEEE
Confidence 999999 4699999887642 11111222122234556678999999999988531 12345677888999
Q ss_pred eeccChhHHHHHHHHHHcCCeEEecCCCChhHHHHHHHHHHHHhhhccCceEEEEeeccCCC
Q 001559 689 ASYIDDSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMINHAHVRKGKIKSFTSYCGGLP 750 (1053)
Q Consensus 689 ~sy~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla~~~i~~~~~~~~~v~sf~~~~Gg~p 750 (1053)
+.|.|.+|..| ++|+++|+.+++|.+ ||..|. +.+|++|+|..|
T Consensus 232 ~vY~P~~T~ll-~~A~~~G~~~~~Gl~-------ML~~Qa----------~~~f~lwtg~~~ 275 (288)
T PRK12749 232 CVYNPHMTKLL-QQAQQAGCKTIDGYG-------MLLWQG----------AEQFTLWTGKDF 275 (288)
T ss_pred ecCCCccCHHH-HHHHHCCCeEECCHH-------HHHHHH----------HHHHHHhcCCCC
Confidence 99999888555 799999999999999 576653 456788998643
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-27 Score=260.90 Aligned_cols=233 Identities=16% Similarity=0.170 Sum_probs=182.3
Q ss_pred cccccccchhhhhHHHHHcCCcEEEEEEEeCC-----CC--------cCccccccccCCCCcchhhhhhcccccchhccC
Q 001559 475 GHLFDQFLINEALDIIEAAGGSFHLVKCQVGQ-----ST--------EALSFSELEVGADDSAVLDQIIDSLTSLANASE 541 (1053)
Q Consensus 475 gHl~d~~~~n~Aldv~~f~~g~v~lvef~V~~-----~s--------~~~sl~~lnvt~p~k~~l~~~ld~~~~~a~~~g 541 (1053)
+||+||.+||.+ ++..+.+..|..|.|.+ ++ +.+++.++|||+|||+.+++++|++++.|+.+|
T Consensus 15 ~hS~SP~ihn~~---f~~~gl~~~Y~~~~v~~~~~~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~lD~l~~~A~~iG 91 (283)
T PRK14027 15 DLSRTPAMHEAE---GLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLGFNGLNITHPYKQAVLPLLDEVSEQATQLG 91 (283)
T ss_pred cccCCHHHHHHH---HHHcCCCeEEEEEecccccCCHHHHHHHHHHHHhcCCCEEEECccCHHHHHHHhhhCCHHHHHhC
Confidence 599999999999 88999999999999874 33 467899999999999999999999999999999
Q ss_pred Ccccccccee-ecceeeeeeecccc----c-CCCCCCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCC
Q 001559 542 NNRDQISGIN-RISLRIGKVQETAT----Q-KGPGTKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQ 615 (1053)
Q Consensus 542 ~~n~~~~~~~-~~~~~~g~~~~~~~----~-~~~~~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~ 615 (1053)
+||| ++. +.++++|||||..- . ......+.++|+|+|+|++|++++..|++.| +
T Consensus 92 AVNT---v~~~~~g~l~G~NTD~~Gf~~~L~~~~~~~~~k~vlilGaGGaarAi~~aL~~~g-~---------------- 151 (283)
T PRK14027 92 AVNT---VVIDATGHTTGHNTDVSGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVTHG-V---------------- 151 (283)
T ss_pred CceE---EEECCCCcEEEEcCCHHHHHHHHHhcCcCcCCCeEEEECCcHHHHHHHHHHHHCC-C----------------
Confidence 9996 444 47789999997611 1 1111345689999999999999999999887 2
Q ss_pred CccEEEEEECCHHHHHHHHhcCCC-ceEEEecCCCHHHHHHhhccccEEEecCCccccH----HHHHHHHHhCCeEEEee
Q 001559 616 NDIRVLVASLYLKDAEEVIEGIPN-AEAVQLDVSDHKSLCKCISQVEIVISLLPASCHV----MVANACIEFKKHLVTAS 690 (1053)
Q Consensus 616 ~~~~v~v~~r~~~~a~~l~~~~~~-~~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~----~v~~aci~~g~~~vD~s 690 (1053)
.+|+|++|+.++++++++.+.. .........+...+.+.+.++|+|||+||.+|.. ++....+..+..++|+.
T Consensus 152 --~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~Gm~~~~~~~~~~~~l~~~~~v~D~v 229 (283)
T PRK14027 152 --QKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGMPAHPGTAFDVSCLTKDHWVGDVV 229 (283)
T ss_pred --CEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCCCCCCCCCCCCCHHHcCCCcEEEEcc
Confidence 3799999999999999876531 1100011112233344557899999999998852 23345677788899999
Q ss_pred ccChhHHHHHHHHHHcCCeEEecCCCChhHHHHHHHHHHHHhhhccCceEEEEeeccCCC
Q 001559 691 YIDDSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMINHAHVRKGKIKSFTSYCGGLP 750 (1053)
Q Consensus 691 y~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla~~~i~~~~~~~~~v~sf~~~~Gg~p 750 (1053)
|.|.+|..| +.|+++|+.+++|.+ ||..|. +.+|++|+|..|
T Consensus 230 Y~P~~T~ll-~~A~~~G~~~~~Gl~-------MLv~Qa----------~~~f~lw~G~~~ 271 (283)
T PRK14027 230 YMPIETELL-KAARALGCETLDGTR-------MAIHQA----------VDAFRLFTGLEP 271 (283)
T ss_pred cCCCCCHHH-HHHHHCCCEEEccHH-------HHHHHH----------HHHHHHHhCCCC
Confidence 999888666 799999999999999 575553 457788999644
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.5e-27 Score=260.35 Aligned_cols=228 Identities=16% Similarity=0.198 Sum_probs=183.1
Q ss_pred cccccccchhhhhHHHHHcCCcEEEEEEEeC-----CCC--------cCccccccccCCCCcchhhhhhcccccchhccC
Q 001559 475 GHLFDQFLINEALDIIEAAGGSFHLVKCQVG-----QST--------EALSFSELEVGADDSAVLDQIIDSLTSLANASE 541 (1053)
Q Consensus 475 gHl~d~~~~n~Aldv~~f~~g~v~lvef~V~-----~~s--------~~~sl~~lnvt~p~k~~l~~~ld~~~~~a~~~g 541 (1053)
+||+||.+||.+ ++..+.++.|..|.|. +++ +.+++.++|||+|||+.+++++|++++.|+.+|
T Consensus 16 ~hS~SP~ihn~~---f~~~gl~~~Y~~~~v~~~~v~~~~l~~~~~~l~~~~~~G~nVTiP~K~~v~~~~D~~~~~A~~iG 92 (284)
T PRK12549 16 QASLSPAMHEAE---GDAQGLRYVYRLIDLDALGLTADALPELLDAAERMGFAGLNITHPCKQAVIPHLDELSDDARALG 92 (284)
T ss_pred ccccCHHHHHHH---HHHcCCCeEEEEEeeccccCCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhccCCHHHHHhC
Confidence 599999999999 8899999999999985 333 466889999999999999999999999999999
Q ss_pred Cccccccceeecceeeeeeeccccc-----CCCCCCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCC
Q 001559 542 NNRDQISGINRISLRIGKVQETATQ-----KGPGTKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQN 616 (1053)
Q Consensus 542 ~~n~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~ 616 (1053)
+||| ++++.++++|||||..-- ......+.++|+|||+|++|++++..|+..| +
T Consensus 93 AvNT---v~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~k~vlIlGaGGaaraia~aL~~~G-~----------------- 151 (284)
T PRK12549 93 AVNT---VVFRDGRRIGHNTDWSGFAESFRRGLPDASLERVVQLGAGGAGAAVAHALLTLG-V----------------- 151 (284)
T ss_pred CceE---EEecCCEEEEEcCCHHHHHHHHHhhccCccCCEEEEECCcHHHHHHHHHHHHcC-C-----------------
Confidence 9996 566788999999976111 1112356689999999999999999999887 3
Q ss_pred ccEEEEEECCHHHHHHHHhcCC----CceEEEecCCCHHHHHHhhccccEEEecCCccccH----HHHHHHHHhCCeEEE
Q 001559 617 DIRVLVASLYLKDAEEVIEGIP----NAEAVQLDVSDHKSLCKCISQVEIVISLLPASCHV----MVANACIEFKKHLVT 688 (1053)
Q Consensus 617 ~~~v~v~~r~~~~a~~l~~~~~----~~~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~----~v~~aci~~g~~~vD 688 (1053)
.+|+|++|+.++++++++.+. ...+. . .+++.+.++++|+||||||.+|.. ++....++.+..++|
T Consensus 152 -~~I~I~nR~~~ka~~la~~l~~~~~~~~~~--~---~~~~~~~~~~aDiVInaTp~Gm~~~~~~~~~~~~l~~~~~v~D 225 (284)
T PRK12549 152 -ERLTIFDVDPARAAALADELNARFPAARAT--A---GSDLAAALAAADGLVHATPTGMAKHPGLPLPAELLRPGLWVAD 225 (284)
T ss_pred -CEEEEECCCHHHHHHHHHHHHhhCCCeEEE--e---ccchHhhhCCCCEEEECCcCCCCCCCCCCCCHHHcCCCcEEEE
Confidence 379999999999999987653 12221 1 133455678899999999998742 233456778888999
Q ss_pred eeccChhHHHHHHHHHHcCCeEEecCCCChhHHHHHHHHHHHHhhhccCceEEEEeeccCCC
Q 001559 689 ASYIDDSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMINHAHVRKGKIKSFTSYCGGLP 750 (1053)
Q Consensus 689 ~sy~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla~~~i~~~~~~~~~v~sf~~~~Gg~p 750 (1053)
++|.|.+|..| +.|+++|+.+++|.+ ||.+|. +.+|++|+|..|
T Consensus 226 ivY~P~~T~ll-~~A~~~G~~~~~G~~-------ML~~Qa----------~~~f~~wtg~~~ 269 (284)
T PRK12549 226 IVYFPLETELL-RAARALGCRTLDGGG-------MAVFQA----------VDAFELFTGREP 269 (284)
T ss_pred eeeCCCCCHHH-HHHHHCCCeEecCHH-------HHHHHH----------HHHHHHhcCCCC
Confidence 99999888555 799999999999999 576653 456788998643
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-26 Score=257.28 Aligned_cols=229 Identities=17% Similarity=0.140 Sum_probs=184.8
Q ss_pred cccccccchhhhhHHHHHcCCcEEEEEEEeCCCC--------cCccccccccCCCCcchhhhhhcccccchhccCCcccc
Q 001559 475 GHLFDQFLINEALDIIEAAGGSFHLVKCQVGQST--------EALSFSELEVGADDSAVLDQIIDSLTSLANASENNRDQ 546 (1053)
Q Consensus 475 gHl~d~~~~n~Aldv~~f~~g~v~lvef~V~~~s--------~~~sl~~lnvt~p~k~~l~~~ld~~~~~a~~~g~~n~~ 546 (1053)
+||+||.+||.+ ++..+.++.|..|+|++++ +..++.++|||+|||+.+++++|++|+.|+.+|+|||
T Consensus 16 ~hS~SP~~hn~~---~~~~gl~~~y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~~~~A~~igavNt- 91 (278)
T PRK00258 16 AHSKSPLIHNAA---FKQLGLDGVYLAILVPPEDLEDAVKGFFALGGRGANVTVPFKEAAFALADELSERARLIGAVNT- 91 (278)
T ss_pred hcccCHHHHHHH---HHHcCCCcEEEEEecCHHHHHHHHHHHHhCCCCEEEECcCCHHHHHHHhhcCCHHHHHhCCceE-
Confidence 499999999999 8899999999999998755 4667899999999999999999999999999999996
Q ss_pred ccceeecceeeeeeeccc----ccC--CCCCCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEE
Q 001559 547 ISGINRISLRIGKVQETA----TQK--GPGTKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRV 620 (1053)
Q Consensus 547 ~~~~~~~~~~~g~~~~~~----~~~--~~~~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v 620 (1053)
++++.++++||||+.. ... .....+.++|+|+|+|++|++++++|+..| + .+|
T Consensus 92 --v~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~k~vlVlGaGg~a~ai~~aL~~~g-~------------------~~V 150 (278)
T PRK00258 92 --LVLEDGRLIGDNTDGIGFVRALEERLGVDLKGKRILILGAGGAARAVILPLLDLG-V------------------AEI 150 (278)
T ss_pred --EEeeCCEEEEEcccHHHHHHHHHhccCCCCCCCEEEEEcCcHHHHHHHHHHHHcC-C------------------CEE
Confidence 4567889999999762 111 111456789999999999999999999887 2 389
Q ss_pred EEEECCHHHHHHHHhcCCCceEEEecCCCHHHHHHhhccccEEEecCCccccH-----HHHHHHHHhCCeEEEeeccChh
Q 001559 621 LVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLCKCISQVEIVISLLPASCHV-----MVANACIEFKKHLVTASYIDDS 695 (1053)
Q Consensus 621 ~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~-----~v~~aci~~g~~~vD~sy~~~~ 695 (1053)
+|++|+.++++++++.+.....+.++. ++.+.+.++|+||||||.++++ ++...++..+..++|++|.|..
T Consensus 151 ~v~~R~~~~a~~l~~~~~~~~~~~~~~----~~~~~~~~~DivInaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P~~ 226 (278)
T PRK00258 151 TIVNRTVERAEELAKLFGALGKAELDL----ELQEELADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGPLP 226 (278)
T ss_pred EEEeCCHHHHHHHHHHhhhccceeecc----cchhccccCCEEEECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCCCC
Confidence 999999999999988765321111111 2346678899999999998863 4456788889999999998887
Q ss_pred HHHHHHHHHHcCCeEEecCCCChhHHHHHHHHHHHHhhhccCceEEEEeeccCCC
Q 001559 696 MSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMINHAHVRKGKIKSFTSYCGGLP 750 (1053)
Q Consensus 696 ~~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla~~~i~~~~~~~~~v~sf~~~~Gg~p 750 (1053)
+..| +.|+++|+.+++|.+ ||..|. +.+|++|+|..|
T Consensus 227 T~ll-~~A~~~G~~~~~G~~-------Ml~~Qa----------~~~f~~wtg~~~ 263 (278)
T PRK00258 227 TPFL-AWAKAQGARTIDGLG-------MLVHQA----------AEAFELWTGVRP 263 (278)
T ss_pred CHHH-HHHHHCcCeecCCHH-------HHHHHH----------HHHHHHHcCCCC
Confidence 7555 799999999999988 576654 346778998643
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-25 Score=249.84 Aligned_cols=231 Identities=16% Similarity=0.121 Sum_probs=178.7
Q ss_pred cccccccchhhhhHHHHHcCCcEEEEEEEeCC-CC-----c--CccccccccCCCCcchhhhhhcccccchhccCCcccc
Q 001559 475 GHLFDQFLINEALDIIEAAGGSFHLVKCQVGQ-ST-----E--ALSFSELEVGADDSAVLDQIIDSLTSLANASENNRDQ 546 (1053)
Q Consensus 475 gHl~d~~~~n~Aldv~~f~~g~v~lvef~V~~-~s-----~--~~sl~~lnvt~p~k~~l~~~ld~~~~~a~~~g~~n~~ 546 (1053)
+||+||.+||.+ ++..+.+..|..|.+.+ ++ . ..++.++|||+|||+.+++++|++++.|+.+|+|||
T Consensus 16 ~hS~SP~ihn~~---f~~~gl~~~y~~~~~~~~~~l~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~~~~A~~iGAVNT- 91 (282)
T TIGR01809 16 AHSRSPHLHNAG---YEILGLPDKTYEFETCSAEELKEVLSGFGPQFGGASVTIPLKFAILRFADEHTDRASLIGSVNT- 91 (282)
T ss_pred hhccCHHHHHHH---HHHcCCCcEEEeeecCCHHHHHHHHHhcCCCCcEEEECCCCHHHHHHHhhcCCHHHHHhCceeE-
Confidence 599999999999 88889999999999864 33 3 447889999999999999999999999999999996
Q ss_pred cccee-ecceeeeeeecc------cccCCC-CCCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCcc
Q 001559 547 ISGIN-RISLRIGKVQET------ATQKGP-GTKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDI 618 (1053)
Q Consensus 547 ~~~~~-~~~~~~g~~~~~------~~~~~~-~~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~ 618 (1053)
+++ +.++++|||||. -.+.+. ...+.++|+|||+|++|++++..|++.| + .
T Consensus 92 --v~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~k~vlvlGaGGaarai~~aL~~~G-~------------------~ 150 (282)
T TIGR01809 92 --LLRTQNGIWKGDNTDWDGIAGALANIGKFEPLAGFRGLVIGAGGTSRAAVYALASLG-V------------------T 150 (282)
T ss_pred --EEEcCCCcEEEecCCHHHHHHHHHhhCCccccCCceEEEEcCcHHHHHHHHHHHHcC-C------------------C
Confidence 444 467899999976 111221 1346789999999999999999999887 3 3
Q ss_pred EEEEEECCHHHHHHHHhcCCCc-eEEEecCCCHHHHHHhhccccEEEecCCccccHHH--HHH--------HHHhCCeEE
Q 001559 619 RVLVASLYLKDAEEVIEGIPNA-EAVQLDVSDHKSLCKCISQVEIVISLLPASCHVMV--ANA--------CIEFKKHLV 687 (1053)
Q Consensus 619 ~v~v~~r~~~~a~~l~~~~~~~-~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~~v--~~a--------ci~~g~~~v 687 (1053)
+|+|++|+.++++++++.+... ....++ ..+++...+.++|+||||||.++.... ... .+..+..++
T Consensus 151 ~i~I~nRt~~ka~~La~~~~~~~~~~~~~--~~~~~~~~~~~~DiVInaTp~g~~~~~~~l~~~~~~~~~~~~~~~~~v~ 228 (282)
T TIGR01809 151 DITVINRNPDKLSRLVDLGVQVGVITRLE--GDSGGLAIEKAAEVLVSTVPADVPADYVDLFATVPFLLLKRKSSEGIFL 228 (282)
T ss_pred eEEEEeCCHHHHHHHHHHhhhcCcceecc--chhhhhhcccCCCEEEECCCCCCCCCHHHhhhhhhhhccccCCCCcEEE
Confidence 7999999999999999876421 111111 123455667889999999998874221 111 123567899
Q ss_pred EeeccChhHHHHHHHHHHcCCeEEecCCCChhHHHHHHHHHHHHhhhccCceEEEEeeccCCC
Q 001559 688 TASYIDDSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMINHAHVRKGKIKSFTSYCGGLP 750 (1053)
Q Consensus 688 D~sy~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla~~~i~~~~~~~~~v~sf~~~~Gg~p 750 (1053)
|+.|.|.++..| +.|+++|+.+++|.+ ||..|. +.+|++|+|..|
T Consensus 229 D~vY~P~~T~ll-~~A~~~G~~~~~Gl~-------MLv~Qa----------~~~f~lwtg~~~ 273 (282)
T TIGR01809 229 DAAYDPWPTPLV-AIVSAAGWRVISGLQ-------MLLHQG----------FAQFEQWTGMPA 273 (282)
T ss_pred EEeeCCCCCHHH-HHHHHCCCEEECcHH-------HHHHHH----------HHHHHHHHCCCC
Confidence 999999888655 799999999999998 575553 456788998643
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-25 Score=247.19 Aligned_cols=226 Identities=19% Similarity=0.180 Sum_probs=180.3
Q ss_pred cccccccchhhhhHHHHHcCCcEEEEEEEeCCCC--------cCccccccccCCCCcchhhhhhcccccchhccCCcccc
Q 001559 475 GHLFDQFLINEALDIIEAAGGSFHLVKCQVGQST--------EALSFSELEVGADDSAVLDQIIDSLTSLANASENNRDQ 546 (1053)
Q Consensus 475 gHl~d~~~~n~Aldv~~f~~g~v~lvef~V~~~s--------~~~sl~~lnvt~p~k~~l~~~ld~~~~~a~~~g~~n~~ 546 (1053)
+||+||.+||.+ ++..+.++.|..|.|.+++ +...+.++|||+|||+.+++++|++++.|+.+|+|||
T Consensus 11 ~hS~SP~~hn~~---~~~~g~~~~y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~~~~A~~~gavNt- 86 (270)
T TIGR00507 11 AHSKSPLIHNAF---FKQLGLEGPYIAFLVPPDDLEDALSGFFALGFKGANVTSPFKEEAFQFLDEIDERAKLAGAVNT- 86 (270)
T ss_pred ccccCHHHHHHH---HHHcCCCcEEEEEecCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhhhCCHHHHHhCCceE-
Confidence 599999999999 8889999999999999765 4568999999999999999999999999999999996
Q ss_pred ccceeecceeeeeeecccc------cCCCCCCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEE
Q 001559 547 ISGINRISLRIGKVQETAT------QKGPGTKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRV 620 (1053)
Q Consensus 547 ~~~~~~~~~~~g~~~~~~~------~~~~~~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v 620 (1053)
++++.++++||||+... +.+. ..+.++++|+|+|++|++++..|++.+ .+|
T Consensus 87 --i~~~~g~l~g~NTD~~G~~~~l~~~~~-~~~~k~vliiGaGg~g~aia~~L~~~g--------------------~~v 143 (270)
T TIGR00507 87 --LKLEDGKLVGYNTDGIGLVSDLERLIP-LRPNQRVLIIGAGGAARAVALPLLKAD--------------------CNV 143 (270)
T ss_pred --EEeeCCEEEEEcCCHHHHHHHHHhcCC-CccCCEEEEEcCcHHHHHHHHHHHHCC--------------------CEE
Confidence 45678899999997611 1112 345688999999999999999999876 389
Q ss_pred EEEECCHHHHHHHHhcCCCc-eEEEecCCCHHHHHHhhccccEEEecCCccccH-----HHHHHHHHhCCeEEEeeccCh
Q 001559 621 LVASLYLKDAEEVIEGIPNA-EAVQLDVSDHKSLCKCISQVEIVISLLPASCHV-----MVANACIEFKKHLVTASYIDD 694 (1053)
Q Consensus 621 ~v~~r~~~~a~~l~~~~~~~-~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~-----~v~~aci~~g~~~vD~sy~~~ 694 (1053)
.+++|+.++++++++.+... ....... ++ ..+.++|+||||||.++.. ++....++.++.++|++|.++
T Consensus 144 ~v~~R~~~~~~~la~~~~~~~~~~~~~~---~~--~~~~~~DivInatp~gm~~~~~~~~~~~~~l~~~~~v~D~~y~p~ 218 (270)
T TIGR00507 144 IIANRTVSKAEELAERFQRYGEIQAFSM---DE--LPLHRVDLIINATSAGMSGNIDEPPVPAEKLKEGMVVYDMVYNPG 218 (270)
T ss_pred EEEeCCHHHHHHHHHHHhhcCceEEech---hh--hcccCccEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEeccCCC
Confidence 99999999999888765421 1111111 11 2235799999999998753 233556788999999999998
Q ss_pred hHHHHHHHHHHcCCeEEecCCCChhHHHHHHHHHHHHhhhccCceEEEEeeccCCC
Q 001559 695 SMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMINHAHVRKGKIKSFTSYCGGLP 750 (1053)
Q Consensus 695 ~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla~~~i~~~~~~~~~v~sf~~~~Gg~p 750 (1053)
++ .|.++|+++|+.+++|.+ ||..|. +.+|++|+|..|
T Consensus 219 ~T-~ll~~A~~~G~~~vdG~~-------Ml~~Qa----------~~~f~~w~g~~~ 256 (270)
T TIGR00507 219 ET-PFLAEAKSLGTKTIDGLG-------MLVAQA----------ALAFELWTGVEP 256 (270)
T ss_pred CC-HHHHHHHHCCCeeeCCHH-------HHHHHH----------HHHHHHHcCCCC
Confidence 88 466899999999999998 576654 446788998643
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.8e-25 Score=243.23 Aligned_cols=220 Identities=16% Similarity=0.147 Sum_probs=174.7
Q ss_pred ccccccchhhhhHHHHHcCCcEEEEEEEeCC-CC-----cCccccccccCCCCcchhhhhhcccccchhccCCccccccc
Q 001559 476 HLFDQFLINEALDIIEAAGGSFHLVKCQVGQ-ST-----EALSFSELEVGADDSAVLDQIIDSLTSLANASENNRDQISG 549 (1053)
Q Consensus 476 Hl~d~~~~n~Aldv~~f~~g~v~lvef~V~~-~s-----~~~sl~~lnvt~p~k~~l~~~ld~~~~~a~~~g~~n~~~~~ 549 (1053)
|++||.+||.+ ++..+.++.|..|...+ .. +.+++.++|||+|||+.+++++|++++.|+.+|+||| +
T Consensus 20 ~~~Sp~ihn~~---f~~~gl~~~Y~~~~~~~l~~~~~~l~~~~~~G~nVT~P~K~~~~~~lD~l~~~A~~iGAVNT---i 93 (272)
T PRK12550 20 SNFGTRFHNYL---YEALGLNFLYKAFTTTDLTAAIGGVRALGIRGCAVSMPFKEAVIPLVDELDPSAQAIESVNT---I 93 (272)
T ss_pred hhcCHHHHHHH---HHHcCCCcEEEecCHhHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhhcCCHHHHHhCCeeE---E
Confidence 58999999999 77899999999998322 11 5668999999999999999999999999999999996 4
Q ss_pred eeecceeeeeeeccc------ccCCCCCCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEE
Q 001559 550 INRISLRIGKVQETA------TQKGPGTKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVA 623 (1053)
Q Consensus 550 ~~~~~~~~g~~~~~~------~~~~~~~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~ 623 (1053)
+++.++++|||||.. .+.+. ...++|+|+|+|++|++++..|++.+ + .+|+|+
T Consensus 94 ~~~~g~l~G~NTD~~Gf~~~L~~~~~--~~~~~vlilGaGGaarAi~~aL~~~g-~------------------~~i~i~ 152 (272)
T PRK12550 94 VNTDGHLKAYNTDYIAIAKLLASYQV--PPDLVVALRGSGGMAKAVAAALRDAG-F------------------TDGTIV 152 (272)
T ss_pred EeeCCEEEEEecCHHHHHHHHHhcCC--CCCCeEEEECCcHHHHHHHHHHHHCC-C------------------CEEEEE
Confidence 567889999999761 11222 23468999999999999999999887 2 379999
Q ss_pred ECCHHHHHHHHhcCCCceEEEecCCCHHHHHHhhccccEEEecCCccccH-------HHHHHHHHhCCeEEEeeccChhH
Q 001559 624 SLYLKDAEEVIEGIPNAEAVQLDVSDHKSLCKCISQVEIVISLLPASCHV-------MVANACIEFKKHLVTASYIDDSM 696 (1053)
Q Consensus 624 ~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~-------~v~~aci~~g~~~vD~sy~~~~~ 696 (1053)
+|+.++++++++.+. . +.. +.+. ..++|+||||||.+|+. ++....+..+..++|+.|.|.+|
T Consensus 153 nR~~~~a~~la~~~~-~-----~~~--~~~~--~~~~dlvINaTp~Gm~~~~~~~~~pi~~~~l~~~~~v~D~vY~P~~T 222 (272)
T PRK12550 153 ARNEKTGKALAELYG-Y-----EWR--PDLG--GIEADILVNVTPIGMAGGPEADKLAFPEAEIDAASVVFDVVALPAET 222 (272)
T ss_pred eCCHHHHHHHHHHhC-C-----cch--hhcc--cccCCEEEECCccccCCCCccccCCCCHHHcCCCCEEEEeecCCccC
Confidence 999999999988653 1 110 1111 24589999999998862 24455677788899999999888
Q ss_pred HHHHHHHHHcCCeEEecCCCChhHHHHHHHHHHHHhhhccCceEEEEeeccCCC
Q 001559 697 SKLDEKAKGAGITILGEMGLDPGIDHMMAMKMINHAHVRKGKIKSFTSYCGGLP 750 (1053)
Q Consensus 697 ~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla~~~i~~~~~~~~~v~sf~~~~Gg~p 750 (1053)
..| ++|+++|+.+++|.+ ||..|. +.+|++|+|..|
T Consensus 223 ~ll-~~A~~~G~~~i~Gl~-------MLi~Qa----------~~~f~lwtg~~~ 258 (272)
T PRK12550 223 PLI-RYARARGKTVITGAE-------VIALQA----------VEQFVLYTGVRP 258 (272)
T ss_pred HHH-HHHHHCcCeEeCCHH-------HHHHHH----------HHHHHHHhCCCC
Confidence 666 799999999999988 576653 456788998644
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-22 Score=240.41 Aligned_cols=217 Identities=18% Similarity=0.205 Sum_probs=174.6
Q ss_pred cccccccchhhhhHHHHHcCCcEEEEEEEeCCCC--------cCccccccccCCCCcchhhhhhcccccchhccCCcccc
Q 001559 475 GHLFDQFLINEALDIIEAAGGSFHLVKCQVGQST--------EALSFSELEVGADDSAVLDQIIDSLTSLANASENNRDQ 546 (1053)
Q Consensus 475 gHl~d~~~~n~Aldv~~f~~g~v~lvef~V~~~s--------~~~sl~~lnvt~p~k~~l~~~ld~~~~~a~~~g~~n~~ 546 (1053)
+||+||.+||.+ +...|.++.|..|.|++++ ...++.++|||+|||+.+++++|++++.|+.+|||||
T Consensus 226 ~hS~SP~~hn~~---f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~v~~~~d~~~~~A~~iGAVNT- 301 (477)
T PRK09310 226 DRSISHLSHNPL---FSQLSLNCPYIKLPLTPQELPKFFSTIRDLPFLGLSVTMPLKTAVLDFLDKLDPSVKLCGSCNT- 301 (477)
T ss_pred ccccCHHHHHHH---HHHcCCCcEEEEeecCHHHHHHHHHHHHhCCCCEEEECccCHHHHHHHhccCCHHHHHhCcceE-
Confidence 499999999999 8899999999999998755 5678999999999999999999999999999999995
Q ss_pred ccceeecceeeeeeecccc------cCCCCCCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEE
Q 001559 547 ISGINRISLRIGKVQETAT------QKGPGTKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRV 620 (1053)
Q Consensus 547 ~~~~~~~~~~~g~~~~~~~------~~~~~~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v 620 (1053)
++++.++++||||+..- +.+. ..+.++++|+|+|++|++++..|++.| .+|
T Consensus 302 --v~~~~g~l~G~NTD~~G~~~~l~~~~~-~~~~k~vlIiGaGgiG~aia~~L~~~G--------------------~~V 358 (477)
T PRK09310 302 --LVFRNGKIEGYNTDGEGLFSLLKQKNI-PLNNQHVAIVGAGGAAKAIATTLARAG--------------------AEL 358 (477)
T ss_pred --EEeeCCEEEEEecCHHHHHHHHHhcCC-CcCCCEEEEEcCcHHHHHHHHHHHHCC--------------------CEE
Confidence 55678899999997611 1122 456789999999999999999999887 378
Q ss_pred EEEECCHHHHHHHHhcCCCceEEEecCCCHHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeeccChhHHHHH
Q 001559 621 LVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLD 700 (1053)
Q Consensus 621 ~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~~~~~~L~ 700 (1053)
.+++|+.++++++++.++. .. .+ .+++.+ +.++|+||||+|.++... ..+. ..++|++|.|.++. |.
T Consensus 359 ~i~~R~~~~~~~la~~~~~-~~--~~---~~~~~~-l~~~DiVInatP~g~~~~---~~l~--~~v~D~~Y~P~~T~-ll 425 (477)
T PRK09310 359 LIFNRTKAHAEALASRCQG-KA--FP---LESLPE-LHRIDIIINCLPPSVTIP---KAFP--PCVVDINTLPKHSP-YT 425 (477)
T ss_pred EEEeCCHHHHHHHHHHhcc-ce--ec---hhHhcc-cCCCCEEEEcCCCCCcch---hHHh--hhEEeccCCCCCCH-HH
Confidence 9999999999988876531 11 11 122222 468999999999887522 1222 37999999998886 55
Q ss_pred HHHHHcCCeEEecCCCChhHHHHHHHHHHHHhhhccCceEEEEeeccC
Q 001559 701 EKAKGAGITILGEMGLDPGIDHMMAMKMINHAHVRKGKIKSFTSYCGG 748 (1053)
Q Consensus 701 ~~Ak~~Gv~~l~g~G~dPGi~~mla~~~i~~~~~~~~~v~sf~~~~Gg 748 (1053)
++|+++|+.+++|.+ ||..|. +.+|++|+|.
T Consensus 426 ~~A~~~G~~~~~G~~-------Ml~~Qa----------~~~f~lw~g~ 456 (477)
T PRK09310 426 QYARSQGSSIIYGYE-------MFAEQA----------LLQFRLWFPT 456 (477)
T ss_pred HHHHHCcCEEECcHH-------HHHHHH----------HHHHHHHcCC
Confidence 899999999999998 576654 4467789986
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-22 Score=241.23 Aligned_cols=226 Identities=17% Similarity=0.191 Sum_probs=178.1
Q ss_pred cccccccchhhhhHHHHHcCCcEEEEEEEeCC-CC-----cCccccccccCCCCcchhhhhhcccccchhccCCcccccc
Q 001559 475 GHLFDQFLINEALDIIEAAGGSFHLVKCQVGQ-ST-----EALSFSELEVGADDSAVLDQIIDSLTSLANASENNRDQIS 548 (1053)
Q Consensus 475 gHl~d~~~~n~Aldv~~f~~g~v~lvef~V~~-~s-----~~~sl~~lnvt~p~k~~l~~~ld~~~~~a~~~g~~n~~~~ 548 (1053)
+||+||.+||.+ ++..+.++.|+.|.|.. .. +...+.++|||+|||+.+++++|++++.|+.+|+|||
T Consensus 263 ~hS~SP~ihn~~---f~~~gl~~~Y~~~~v~~l~~~~~~l~~~~~~G~nVTiP~K~~v~~~lD~~~~~A~~iGAVNT--- 336 (529)
T PLN02520 263 GHSKSPILHNEA---FKSVGFNGVYVHLLVDDLAKFLQTYSSPDFAGFSCTIPHKEDALKCCDEVDPIAKSIGAINT--- 336 (529)
T ss_pred ccccCHHHHHHH---HHHCCCCcEEEEeehhhHHHHHHHHhhCCCCEEEECcCCHHHHHHHhccCCHHHHHhCCceE---
Confidence 499999999999 78899999999999953 11 5678999999999999999999999999999999996
Q ss_pred ceee--cceeeeeeecccc------cC----C-----CCCCCCCeEEEEcCchhhHHHHHHHHhCCCCCccccccccccc
Q 001559 549 GINR--ISLRIGKVQETAT------QK----G-----PGTKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETD 611 (1053)
Q Consensus 549 ~~~~--~~~~~g~~~~~~~------~~----~-----~~~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~ 611 (1053)
++++ .++++||||+..- +. + ....+.++|+|+|+|++|++++..|++.|
T Consensus 337 vv~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~k~vlIlGaGGagrAia~~L~~~G-------------- 402 (529)
T PLN02520 337 IIRRPSDGKLVGYNTDYIGAISAIEDGLRASGSSPASGSPLAGKLFVVIGAGGAGKALAYGAKEKG-------------- 402 (529)
T ss_pred EEEeCCCCEEEEEcccHHHHHHHHHhhhcccccccccccCCCCCEEEEECCcHHHHHHHHHHHHCC--------------
Confidence 4443 6789999997611 10 0 11345689999999999999999999987
Q ss_pred ccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHHHh-hccccEEEecCCccccH-----HHHHHHHHhCCe
Q 001559 612 FEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLCKC-ISQVEIVISLLPASCHV-----MVANACIEFKKH 685 (1053)
Q Consensus 612 ~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~~~-i~~~DvVI~~~p~~~~~-----~v~~aci~~g~~ 685 (1053)
.+|.+++|+.++++++++.++. ..+ +. +++.+. ...+|+|||++|.+|.+ ++....++.+..
T Consensus 403 ------~~V~i~nR~~e~a~~la~~l~~-~~~--~~---~~~~~~~~~~~diiINtT~vGm~~~~~~~pl~~~~l~~~~~ 470 (529)
T PLN02520 403 ------ARVVIANRTYERAKELADAVGG-QAL--TL---ADLENFHPEEGMILANTTSVGMQPNVDETPISKHALKHYSL 470 (529)
T ss_pred ------CEEEEEcCCHHHHHHHHHHhCC-cee--eH---hHhhhhccccCeEEEecccCCCCCCCCCCcccHhhCCCCCE
Confidence 3799999999999999887642 222 22 223222 24589999999998853 344456777788
Q ss_pred EEEeeccChhHHHHHHHHHHcCCeEEecCCCChhHHHHHHHHHHHHhhhccCceEEEEeeccCCC
Q 001559 686 LVTASYIDDSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMINHAHVRKGKIKSFTSYCGGLP 750 (1053)
Q Consensus 686 ~vD~sy~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla~~~i~~~~~~~~~v~sf~~~~Gg~p 750 (1053)
++|+.|.|.+|..| ++|+++|+.+++|.+ ||..|+ +.+|++|+|..|
T Consensus 471 v~D~vY~P~~T~ll-~~A~~~G~~~~~Gl~-------MLv~Qa----------~~~f~lwtg~~~ 517 (529)
T PLN02520 471 VFDAVYTPKITRLL-REAEESGAIIVSGTE-------MFIRQA----------YEQFERFTGLPA 517 (529)
T ss_pred EEEeccCCCcCHHH-HHHHHCCCeEeCcHH-------HHHHHH----------HHHHHHHhCCCC
Confidence 99999999888666 799999999999988 576664 346778998643
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-19 Score=201.12 Aligned_cols=249 Identities=16% Similarity=0.132 Sum_probs=169.0
Q ss_pred HHHHHHHhcCCCCcceeEEEEcCCCCCCCCChhHhhCCcEEccC----CCcCCEEEeecCCC------------------
Q 001559 28 SHCARLLHSGRDKSGVARIVVQPSTKRIHHDVLYEDVGCQISED----LSECGLVLGIKQPK------------------ 85 (1053)
Q Consensus 28 ~~v~~L~~~G~~~~~~~~V~VE~~a~~~f~D~~Y~~aGA~i~~~----~~~adiIl~Vk~p~------------------ 85 (1053)
..+++|.++| ++|.| .+|+|++|..+||++.++ ++.||+|+++-+++
T Consensus 16 ~~~~~l~~~G------~~v~~-----~g~~~~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~ 84 (296)
T PRK08306 16 ELIRKLVELG------AKVSL-----VGFDQLDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLT 84 (296)
T ss_pred HHHHHHHHCC------CEEEE-----EeccccccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccccCCcch
Confidence 4689999999 99999 889999999999999854 34699999996552
Q ss_pred cccc---CCCCeEEEEcccccccCCCHHHHHHHHHcCCcEEEeccccCCCCcc-cchHHHHHHHHHHHHHHHHhhHhhhh
Q 001559 86 LEMI---LPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYELIVGDNGRR-LLAFGKFAGRAGMIDFLHGLGQRYLS 161 (1053)
Q Consensus 86 ~~~l---~~~~t~i~fsh~~k~q~~n~~ll~~l~~k~it~i~~E~i~~~~~~~-l~~fg~~AG~ag~~~al~~l~~~~l~ 161 (1053)
.+.+ .+++. ++++.. ++.+-+.+.++|++++++... +.+. +.+...-.| ++..++..+
T Consensus 85 ~~~l~~l~~~~~-v~~G~~------~~~~~~~~~~~gi~~~~~~~~---~~~~~~ns~~~aeg--av~~a~~~~------ 146 (296)
T PRK08306 85 EELLELTPEHCT-IFSGIA------NPYLKELAKETNRKLVELFER---DDVAILNSIPTAEG--AIMMAIEHT------ 146 (296)
T ss_pred HHHHHhcCCCCE-EEEecC------CHHHHHHHHHCCCeEEEEecc---chhhhhccHhHHHH--HHHHHHHhC------
Confidence 1222 45652 223322 233446677999999865544 2222 233333333 222211110
Q ss_pred cCCCCCccccccccccccHHHHHHHHHhhchhhhccCCCCCCCCeEEEEEccchhHHHHHHHHhhCCCceecCCCchhhh
Q 001559 162 LGYSTPFLSLGASYMYSSLAAAKAAVISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELF 241 (1053)
Q Consensus 162 ~g~~tpf~~~~~~~~y~~~~~~~~a~~~~g~~i~~~g~p~~~~p~~v~i~G~G~vg~gA~~~~~~LGa~~V~~~dl~~~~ 241 (1053)
+ ..+...+++|+|.|++|+.++..++++|++ |++.+.+...
T Consensus 147 ------------------------------------~--~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~-V~v~~r~~~~ 187 (296)
T PRK08306 147 ------------------------------------P--ITIHGSNVLVLGFGRTGMTLARTLKALGAN-VTVGARKSAH 187 (296)
T ss_pred ------------------------------------C--CCCCCCEEEEECCcHHHHHHHHHHHHCCCE-EEEEECCHHH
Confidence 0 145678999999999999999999999996 7665533111
Q ss_pred hcccccCCCCcccceEEEeeeecccccccccCCCCCccccccccCccCcCcchhhhccCCCcEEEEcccccCCCCcccCH
Q 001559 242 GKAKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAPYASVIVNCMYWEQRFPRLLST 321 (1053)
Q Consensus 242 ~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~f~~~~~~~~DilIn~a~~g~~~P~Lit~ 321 (1053)
.+ + . ..+|++.. . + ..+ .+.++.+|+||||+ .+.++++
T Consensus 188 ~~---~----~----~~~G~~~~------------~------------~-~~l-~~~l~~aDiVI~t~-----p~~~i~~ 225 (296)
T PRK08306 188 LA---R----I----TEMGLSPF------------H------------L-SEL-AEEVGKIDIIFNTI-----PALVLTK 225 (296)
T ss_pred HH---H----H----HHcCCeee------------c------------H-HHH-HHHhCCCCEEEECC-----ChhhhhH
Confidence 00 0 0 00111000 0 0 011 34566899999996 2457899
Q ss_pred HHHHHhhcCCCCceEEEEEeecCCCceeeecccccccCCeEEeCCCCCCcCCCCCCCCeEEEecCChhhHH-HHHHHHHH
Q 001559 322 QQLQDLVRKGCPLVGISDITCDIGGSLEFVNRTTSIDSSFFRYDPLSDSYHDDLEGNGLVCQAVDTLPTEF-AKEASQHF 400 (1053)
Q Consensus 322 ~~v~~m~k~~~~gsvIvDis~D~gG~iE~t~~~tti~~P~~~~~~~~~~~~~~~~~~gV~i~~vdnLPs~l-p~~AS~~f 400 (1053)
++++.| + |+++|+|+++++|| ++|. .. ..+||++++.++||+.+ |.+||++|
T Consensus 226 ~~l~~~-~---~g~vIIDla~~pgg-td~~----~a------------------~~~Gv~~~~~~~lpg~vap~ta~~~~ 278 (296)
T PRK08306 226 EVLSKM-P---PEALIIDLASKPGG-TDFE----YA------------------EKRGIKALLAPGLPGKVAPKTAGQIL 278 (296)
T ss_pred HHHHcC-C---CCcEEEEEccCCCC-cCee----eh------------------hhCCeEEEEECCCCccCCHHHHHHHH
Confidence 999986 5 78999999999999 6652 11 24699999999999999 99999999
Q ss_pred HHHHHHHHHHhhc
Q 001559 401 GDILLEFIGSLSS 413 (1053)
Q Consensus 401 s~~l~~~l~~l~~ 413 (1053)
++++.+||..+..
T Consensus 279 ~~~i~~~l~~~~~ 291 (296)
T PRK08306 279 ANVLSQLLAEDLI 291 (296)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987754
|
|
| >KOG2733 consensus Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.6e-16 Score=169.90 Aligned_cols=130 Identities=25% Similarity=0.260 Sum_probs=109.4
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC--------CCceEEE
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI--------PNAEAVQ 644 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~--------~~~~~~~ 644 (1053)
...++|+| +|+.|.++++.+.+.... .+.++.|+.|++++++++++.. ++.-++.
T Consensus 5 ~yDvVIyGASGfTG~yivee~v~~~~~----------------~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i 68 (423)
T KOG2733|consen 5 RYDVVIYGASGFTGKYIVEEAVSSQVF----------------EGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILI 68 (423)
T ss_pred eeeEEEEccccccceeeHHHHhhhhcc----------------cCceEEEecCCHHHHHHHHHHHhhccCCCcccceEEE
Confidence 45799999 699999999999875421 2579999999999999888653 2234778
Q ss_pred ecCCCHHHHHHhhccccEEEecCC-cccc-HHHHHHHHHhCCeEEEeeccCh----hHHHHHHHHHHcCCeEEecCCCCh
Q 001559 645 LDVSDHKSLCKCISQVEIVISLLP-ASCH-VMVANACIEFKKHLVTASYIDD----SMSKLDEKAKGAGITILGEMGLDP 718 (1053)
Q Consensus 645 ~d~~d~~~l~~~i~~~DvVI~~~p-~~~~-~~v~~aci~~g~~~vD~sy~~~----~~~~L~~~Ak~~Gv~~l~g~G~dP 718 (1053)
+|.+|+++|.++.+++.+||||++ +.+| .+|+++|+++|+|++|+|..|. ....+|+.|+++|+.++..||+|.
T Consensus 69 ~D~~n~~Sl~emak~~~vivN~vGPyR~hGE~VVkacienG~~~vDISGEP~f~E~mq~kYhd~A~ekGVYIVsaCGfDS 148 (423)
T KOG2733|consen 69 ADSANEASLDEMAKQARVIVNCVGPYRFHGEPVVKACIENGTHHVDISGEPQFMERMQLKYHDLAKEKGVYIVSACGFDS 148 (423)
T ss_pred ecCCCHHHHHHHHhhhEEEEeccccceecCcHHHHHHHHcCCceeccCCCHHHHHHHHHHHHHHHHhcCeEEEeecccCC
Confidence 999999999999999999999995 5555 8999999999999999996553 334789999999999999999986
Q ss_pred h
Q 001559 719 G 719 (1053)
Q Consensus 719 G 719 (1053)
=
T Consensus 149 I 149 (423)
T KOG2733|consen 149 I 149 (423)
T ss_pred C
Confidence 3
|
|
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.6e-14 Score=154.93 Aligned_cols=185 Identities=16% Similarity=0.195 Sum_probs=135.7
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC-CceEEEecCCC
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NAEAVQLDVSD 649 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~~~~~~d~~d 649 (1053)
.+...++|.| .|++|..+|++|++++ ..-.++.||..+..++...+. ++... ++-+
T Consensus 4 e~e~d~iiYGAtGy~G~lvae~l~~~g--------------------~~~aLAgRs~~kl~~l~~~LG~~~~~~--p~~~ 61 (382)
T COG3268 4 EREYDIIIYGATGYAGGLVAEYLAREG--------------------LTAALAGRSSAKLDALRASLGPEAAVF--PLGV 61 (382)
T ss_pred CcceeEEEEccccchhHHHHHHHHHcC--------------------CchhhccCCHHHHHHHHHhcCcccccc--CCCC
Confidence 4567899999 6999999999999987 245899999999999988875 33333 3334
Q ss_pred HHHHHHhhccccEEEecCCcccc--HHHHHHHHHhCCeEEEeec----cChhHHHHHHHHHHcCCeEEecCCCChhHHHH
Q 001559 650 HKSLCKCISQVEIVISLLPASCH--VMVANACIEFKKHLVTASY----IDDSMSKLDEKAKGAGITILGEMGLDPGIDHM 723 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~~~~--~~v~~aci~~g~~~vD~sy----~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~m 723 (1053)
+..+.+++++++||+||++++.+ .+++++|+.+|+||.|++. +......+|++|+++|+.|+++||||.=.+++
T Consensus 62 p~~~~~~~~~~~VVlncvGPyt~~g~plv~aC~~~GTdY~DiTGEi~~fe~~i~~yh~~A~~~Ga~Ii~~cGFDsIPsDl 141 (382)
T COG3268 62 PAALEAMASRTQVVLNCVGPYTRYGEPLVAACAAAGTDYADITGEIMFFENSIDLYHAQAADAGARIIPGCGFDSIPSDL 141 (382)
T ss_pred HHHHHHHHhcceEEEeccccccccccHHHHHHHHhCCCeeeccccHHHHHHHHHHHHHHHHhcCCEEeccCCCCcCccch
Confidence 78899999999999999976653 7899999999999999984 22334456999999999999999999988888
Q ss_pred HHHHHHHHhhhcc-CceEEE----Eeecc-CCCCCCCCCCccccccccCHHHHHHhccCCceEEECCEEEEecC
Q 001559 724 MAMKMINHAHVRK-GKIKSF----TSYCG-GLPSPAAANNPLAYKFSWSPAGAIRAGRNPAIYLFNGKTVQVDG 791 (1053)
Q Consensus 724 la~~~i~~~~~~~-~~v~sf----~~~~G-g~p~p~~~~~pl~yk~swsp~~~l~~~~~pa~~~~~G~~~~v~~ 791 (1053)
-.+++.++....+ +++... .+.+| |+.. -+....++.........++|+.+.+|.
T Consensus 142 ~v~~l~~~~~~d~~~~~~~t~l~l~s~t~~g~S~-------------GTaat~~e~l~~~~~~~~~gr~~~~P~ 202 (382)
T COG3268 142 GVYALLKQALPDGTEELIATHLALGSFTGSGISG-------------GTAATSVEGLATAGKDPEAGRLLRVPY 202 (382)
T ss_pred HHHHHHHhhCcccccchhhhheeeeecccCCccc-------------ccHHHHHHHHHhccCCcccCceeccCc
Confidence 6666666553221 111111 11112 1110 133445555555677789999999986
|
|
| >KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-12 Score=144.96 Aligned_cols=328 Identities=15% Similarity=0.050 Sum_probs=224.7
Q ss_pred EEeeccCCCCCcceecChHHHHHHHhcCCCCcceeEEEEcCCCCCCCCChhHhhCCcEEccCCC----cCCEEEeecCCC
Q 001559 10 GILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPSTKRIHHDVLYEDVGCQISEDLS----ECGLVLGIKQPK 85 (1053)
Q Consensus 10 Gi~~E~~~~~ErRv~ltP~~v~~L~~~G~~~~~~~~V~VE~~a~~~f~D~~Y~~aGA~i~~~~~----~adiIl~Vk~p~ 85 (1053)
.+++|++ +.|-|++|+|-+++.|+.+| +...+|.+-.+.|-|.+|++.|..+++.-+ +.+++.|+++.+
T Consensus 61 ~L~~~v~-~~D~viSLlP~t~h~lVaK~------~i~~~~~~vtsSyv~pe~~~L~~~~v~AG~ti~~e~gldpGidhm~ 133 (445)
T KOG0172|consen 61 ALRKEVK-PLDLVISLLPYTFHPLVAKG------CIITKEDSVTSSYVDPELEELEKAAVPAGSTIMNEIGLDPGIDHMP 133 (445)
T ss_pred HHHhhhc-ccceeeeeccchhhHHHHHH------HHHhhcccccccccCHHHHhhhhhccCCCceEecccccCcchhhhh
Confidence 4567888 99999999999999999999 899999999999999999999999987543 468999999887
Q ss_pred ccccC-CCCeEEEEcccccccCCCHHHHHHHHHcCCcEEEeccccCCCCcccchHHHHHHHHHHHHHHHHhhHhhhhcCC
Q 001559 86 LEMIL-PDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYELIVGDNGRRLLAFGKFAGRAGMIDFLHGLGQRYLSLGY 164 (1053)
Q Consensus 86 ~~~l~-~~~t~i~fsh~~k~q~~n~~ll~~l~~k~it~i~~E~i~~~~~~~l~~fg~~AG~ag~~~al~~l~~~~l~~g~ 164 (1053)
.-+-. .-+.+.+|.|+|+.|....+.......-.-..||||..-..++.|.++|++.+|.++.+.+-. |...+....+
T Consensus 134 a~~ti~~vh~hgg~i~sf~sycGglpape~s~nplgykfsws~~gvl~a~rnsAky~~~Gkiv~v~g~~-~~~~~~~~~~ 212 (445)
T KOG0172|consen 134 AMKTIDLVHEHGGKIKSFKSYCGGLPAPERSNNPLGYKFSWSPLGVLLALRNSAKYYKNGKIVEVDGGD-LADTATHYDF 212 (445)
T ss_pred hhccchHHHhhcceeeehhhhcCCccChhhCCCCcceeeccchhhhhhhccccchhccCCeEEEecccc-HHhhccCccc
Confidence 65544 346678899999999999999999999999999999998888999999999999998766542 2222211111
Q ss_pred CCCcccc-cccc--------ccccHHHHHHHHHhhchhhhccCCCCCCCCeEEEEEccchhHHHHHHHHhhCCCceecCC
Q 001559 165 STPFLSL-GASY--------MYSSLAAAKAAVISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPS 235 (1053)
Q Consensus 165 ~tpf~~~-~~~~--------~y~~~~~~~~a~~~~g~~i~~~g~p~~~~p~~v~i~G~G~vg~gA~~~~~~LGa~~V~~~ 235 (1053)
-|++.+ +.+. .|+--.++.++++ +++ ...|.+.+|-+-|.+|.++.+.+..++.. .
T Consensus 213 -~pg~al~~yPNrdst~y~evy~I~~ea~tilr--------gtl--ryqgf~~~i~aL~~~G~~~~da~~~~~~~---a- 277 (445)
T KOG0172|consen 213 -YPGPALECYPNRDSTEYSEVYGIPREAKTILR--------GTL--RYQGFVLIIGALVRCGLLACDALEKFSIP---A- 277 (445)
T ss_pred -CccccccccCCcchhhHHHHhcchHHHHHHHh--------ccc--ccccHHHHHHHHHHcCccchhhHhhcCCC---C-
Confidence 233333 2222 2322235666654 222 23455555555699999999988887753 1
Q ss_pred CchhhhhcccccCCCCcccceEEEeeeecccccccccCCCCCccccccccCccCcCcchhhhccCCCcEEEEcccccCCC
Q 001559 236 RLPELFGKAKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAPYASVIVNCMYWEQRF 315 (1053)
Q Consensus 236 dl~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~f~~~~~~~~DilIn~a~~g~~~ 315 (1053)
...+|+.+...- .++|+. .++.||-++|.+-..+.
T Consensus 278 --------------------------n~L~W~~~~~~~-~g~~~~------------------i~ed~i~~i~~~~~~~~ 312 (445)
T KOG0172|consen 278 --------------------------NILTWKELLTSL-GGPFSE------------------IEEDDIKVICIYLSGKD 312 (445)
T ss_pred --------------------------CcccHHHHHHhh-cCCCcC------------------ccHHHHHHHHHHhhcCc
Confidence 122333333322 234421 11346777888874455
Q ss_pred CcccCHHHHHHhhcCCCCceEEEEEeecCCC---ceeeecccccccCCeEEeCCCCCCcCCCCCCCCeEEEecCChhhHH
Q 001559 316 PRLLSTQQLQDLVRKGCPLVGISDITCDIGG---SLEFVNRTTSIDSSFFRYDPLSDSYHDDLEGNGLVCQAVDTLPTEF 392 (1053)
Q Consensus 316 P~Lit~~~v~~m~k~~~~gsvIvDis~D~gG---~iE~t~~~tti~~P~~~~~~~~~~~~~~~~~~gV~i~~vdnLPs~l 392 (1053)
||.++. ++.|--++.+....+|++||.-. .+...-..|+.|.|+....- .++..+-....++++|..+
T Consensus 313 ~~~l~~--~e~Lg~~~~k~v~~~~~~~DTl~~~l~~~l~y~~~e~Dmvvl~h~~-------~~~~p~g~~e~~t~~l~~y 383 (445)
T KOG0172|consen 313 PRILST--LEWLGLFSDKLVTVRGVSLDTLCPHLEEPLYYVDTEFDMVVLQHKF-------GTEPPEGKVESITHTLVLY 383 (445)
T ss_pred cchhhh--hHhcCCCccccccccCCchhccccccccceeccCCccceeEEEecc-------eeeCCCCceEEeeecHhhc
Confidence 544432 22221144577788899999632 23333444555555443210 2234455668999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC
Q 001559 393 AKEASQHFGDILLEFIGSLSST 414 (1053)
Q Consensus 393 p~~AS~~fs~~l~~~l~~l~~~ 414 (1053)
|+.++..|+..++++...|+..
T Consensus 384 g~~ng~samaktVg~p~ai~~~ 405 (445)
T KOG0172|consen 384 GRENGESAMAKTVGSPTAIAAK 405 (445)
T ss_pred CCccchhHHHHhcCchHhhhhh
Confidence 9999999999999999988654
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.7e-10 Score=113.68 Aligned_cols=128 Identities=17% Similarity=0.286 Sum_probs=98.3
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
.+.++|+|+|+|.+|+.+++.|.+.+ . ..|.+++|+.++++++++.+.. ..+..+..
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g-~------------------~~v~v~~r~~~~~~~~~~~~~~-~~~~~~~~--- 73 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELG-A------------------AKIVIVNRTLEKAKALAERFGE-LGIAIAYL--- 73 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCC-C------------------CEEEEEcCCHHHHHHHHHHHhh-cccceeec---
Confidence 45689999999999999999998875 1 3799999999999888776542 11112222
Q ss_pred HHHHhhccccEEEecCCcccc----HHHHHHHHHhCCeEEEeeccChhHHHHHHHHHHcCCeEEecCCCChhHHHHHHHH
Q 001559 652 SLCKCISQVEIVISLLPASCH----VMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMK 727 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~~~~----~~v~~aci~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla~~ 727 (1053)
+..+.++++|+||+|+|...+ ......+++.++.++|++|.+..+ .+.+++++.|+.+++|.. |+..|
T Consensus 74 ~~~~~~~~~Dvvi~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~~~~~-~l~~~~~~~g~~~v~g~~-------~~~~q 145 (155)
T cd01065 74 DLEELLAEADLIINTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNPLET-PLLKEARALGAKTIDGLE-------MLVYQ 145 (155)
T ss_pred chhhccccCCEEEeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcCCCCC-HHHHHHHHCCCceeCCHH-------HHHHH
Confidence 334557899999999998875 233456788999999999987766 888999999999998777 57665
Q ss_pred HHH
Q 001559 728 MIN 730 (1053)
Q Consensus 728 ~i~ 730 (1053)
.+.
T Consensus 146 ~~~ 148 (155)
T cd01065 146 AAE 148 (155)
T ss_pred HHH
Confidence 443
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PF04455 Saccharop_dh_N: LOR/SDH bifunctional enzyme conserved region ; InterPro: IPR007545 Lysine-oxoglutarate reductase/Saccharopine dehydrogenase (LOR/SDH) is a bifunctional enzyme | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.9e-10 Score=107.91 Aligned_cols=75 Identities=37% Similarity=0.616 Sum_probs=64.7
Q ss_pred ccceeeecccccccccchhhhhHHHHHcCCcEEEEEEEeCCCCcCccccccccCCCCcchhhhhhcccccchhcc
Q 001559 466 KHNLLVSLSGHLFDQFLINEALDIIEAAGGSFHLVKCQVGQSTEALSFSELEVGADDSAVLDQIIDSLTSLANAS 540 (1053)
Q Consensus 466 ~~~~~~~~~gHl~d~~~~n~Aldv~~f~~g~v~lvef~V~~~s~~~sl~~lnvt~p~k~~l~~~ld~~~~~a~~~ 540 (1053)
|++++|+|+||+||++++|++||++..+||+|++.+|+|++.....|.+.+.|+.|+.+.|..+|+++..++...
T Consensus 1 ~~s~~VeL~GHLiDSgil~~vLD~I~d~GG~F~i~~~~vG~~~~d~S~a~l~V~a~d~~~L~~Il~~L~~lga~~ 75 (103)
T PF04455_consen 1 MFSREVELEGHLIDSGILNRVLDIIMDMGGDFEILEFDVGKSKDDTSYARLQVSAPDEEHLDEILDELHQLGAVP 75 (103)
T ss_dssp -EEEEEEEEE--TTSSHHHHHHHHHHHTT-EEEEEEEE--SSTTS-EEEEEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred CccEEEEEEEeeechhhHHHHHHHHHhcCCCEEEEEEEeCCCCCCceeEEEEEecCCHHHHHHHHHHHHHHcCCC
Confidence 578999999999999999999999999999999999999999999999999999999999999999998877664
|
This conserved region is commonly found immediately N-terminal to saccharopine dehydrogenase conserved region (IPR005097 from INTERPRO) in eukaryotes [, ].; PDB: 3C2Q_B 3MGJ_A. |
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.1e-09 Score=117.52 Aligned_cols=154 Identities=13% Similarity=0.163 Sum_probs=119.2
Q ss_pred HHHHHcCCcEEEEEE--EeCCCC---------cCccccccccCCCCcchhhh--hhcccccchhccCCccccccceeecc
Q 001559 488 DIIEAAGGSFHLVKC--QVGQST---------EALSFSELEVGADDSAVLDQ--IIDSLTSLANASENNRDQISGINRIS 554 (1053)
Q Consensus 488 dv~~f~~g~v~lvef--~V~~~s---------~~~sl~~lnvt~p~k~~l~~--~ld~~~~~a~~~g~~n~~~~~~~~~~ 554 (1053)
..++..|.+++|..| .+.++. ...++.+++|++|+|+.+.. ++|++ +.++-++++|+. + .+
T Consensus 56 ~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d~~v~Gi~VqlPlp~~i~~~~~ld~I-~~aKDVdg~n~~----n-~G 129 (283)
T PRK14192 56 NACRRVGMDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQHPVPAQIDERACFDAI-SLAKDVDGVTCL----G-FG 129 (283)
T ss_pred HHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCccccCHHHHHhcc-CHHHhcCCCCcc----c-cC
Confidence 348889999999999 677654 44478899999999999999 99999 899999999952 2 44
Q ss_pred e------eeeeeecc-----cccCCCCCCCCCeEEEEcCch-hhHHHHHHHHhCCCCCcccccccccccccCCCccEEEE
Q 001559 555 L------RIGKVQET-----ATQKGPGTKGTSSVLIIGAGR-VCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLV 622 (1053)
Q Consensus 555 ~------~~g~~~~~-----~~~~~~~~~~~~~VlIiGaG~-vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v 622 (1053)
+ .+|++|+. ....+. ..++++|+|+|+|+ +|++++..|.+.+ ..|++
T Consensus 130 ~l~~~~~~~~p~T~~gii~~L~~~~i-~l~Gk~vvViG~gg~vGkpia~~L~~~g--------------------atVtv 188 (283)
T PRK14192 130 RMAMGEAAYGSATPAGIMRLLKAYNI-ELAGKHAVVVGRSAILGKPMAMMLLNAN--------------------ATVTI 188 (283)
T ss_pred ccccCCCcccCCcHHHHHHHHHHcCC-CCCCCEEEEECCcHHHHHHHHHHHHhCC--------------------CEEEE
Confidence 4 56777753 111233 56789999999987 9999999998876 38999
Q ss_pred EECCHHHHHHHHhcCCCceEEEecCCCHHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeeccC
Q 001559 623 ASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYID 693 (1053)
Q Consensus 623 ~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~ 693 (1053)
++|.. .+|.+.++++|+|||++|..- .+-...++.|..++|+.|++
T Consensus 189 ~~~~t-----------------------~~L~~~~~~aDIvI~AtG~~~--~v~~~~lk~gavViDvg~n~ 234 (283)
T PRK14192 189 CHSRT-----------------------QNLPELVKQADIIVGAVGKPE--LIKKDWIKQGAVVVDAGFHP 234 (283)
T ss_pred EeCCc-----------------------hhHHHHhccCCEEEEccCCCC--cCCHHHcCCCCEEEEEEEee
Confidence 98721 235556689999999996321 34456689999999999876
|
|
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.8e-08 Score=112.02 Aligned_cols=144 Identities=19% Similarity=0.174 Sum_probs=100.9
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH-HHHHHHHhcCCCceEEEecCCCHHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL-KDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~-~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
+.||.|+|+|.+|+.+++.+.+.+++ --+.|++|+. +++. +..+ .. ...|
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~------------------ELVgV~dr~~~~~~~---~~~~---v~--~~~d--- 53 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDM------------------ELVGVFSRRGAETLD---TETP---VY--AVAD--- 53 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCc------------------EEEEEEcCCcHHHHh---hcCC---cc--ccCC---
Confidence 47999999999999999999877533 1456788884 3322 2222 11 1112
Q ss_pred HHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeecc----ChhHHHHHHHHHHcCCeEEecCCCChhHHHHHHHHH
Q 001559 653 LCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYI----DDSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKM 728 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~----~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla~~~ 728 (1053)
..+++.++|+|+-|+|...|.+.+..|+++|+|+||.... ++....+++.|++.|-..+.+.|+|||...+.=.
T Consensus 54 ~~e~l~~iDVViIctPs~th~~~~~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~~GwDPG~~si~r~-- 131 (324)
T TIGR01921 54 DEKHLDDVDVLILCMGSATDIPEQAPYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVISTGWDPGMFSINRV-- 131 (324)
T ss_pred HHHhccCCCEEEEcCCCccCHHHHHHHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEEECCCCcChHHHHHH--
Confidence 3344578999999999999999999999999999999642 3446678888888777778789999999887622
Q ss_pred HHHhhhccCceEEEEeeccCCC
Q 001559 729 INHAHVRKGKIKSFTSYCGGLP 750 (1053)
Q Consensus 729 i~~~~~~~~~v~sf~~~~Gg~p 750 (1053)
+.+. ...+=..+..|-.|++
T Consensus 132 ~~ea--~lp~g~~yt~wG~g~s 151 (324)
T TIGR01921 132 YGEA--VLPKGQTYTFWGPGLS 151 (324)
T ss_pred HHhc--cCCCCcceeccCCCcC
Confidence 3221 1112245666665554
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.9e-09 Score=102.70 Aligned_cols=98 Identities=19% Similarity=0.335 Sum_probs=74.9
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
..+.++|+|||+|++|++++.+|+..| + .+|+|++|+.++++++++.+++..+...+.
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g-~------------------~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~--- 66 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALG-A------------------KEITIVNRTPERAEALAEEFGGVNIEAIPL--- 66 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTT-S------------------SEEEEEESSHHHHHHHHHHHTGCSEEEEEG---
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcC-C------------------CEEEEEECCHHHHHHHHHHcCccccceeeH---
Confidence 456899999999999999999999987 3 379999999999999999875433333333
Q ss_pred HHHHHhhccccEEEecCCccccHHHHHHHHHhC----CeEEEeec
Q 001559 651 KSLCKCISQVEIVISLLPASCHVMVANACIEFK----KHLVTASY 691 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g----~~~vD~sy 691 (1053)
+++.+.+.++|+||||||.++. .+-...++.. ..++|+++
T Consensus 67 ~~~~~~~~~~DivI~aT~~~~~-~i~~~~~~~~~~~~~~v~Dla~ 110 (135)
T PF01488_consen 67 EDLEEALQEADIVINATPSGMP-IITEEMLKKASKKLRLVIDLAV 110 (135)
T ss_dssp GGHCHHHHTESEEEE-SSTTST-SSTHHHHTTTCHHCSEEEES-S
T ss_pred HHHHHHHhhCCeEEEecCCCCc-ccCHHHHHHHHhhhhceecccc
Confidence 4566788999999999998876 3333444444 47899986
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PF08501 Shikimate_dh_N: Shikimate dehydrogenase substrate binding domain; InterPro: IPR013708 This domain is the substrate binding domain of shikimate dehydrogenase [] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.2e-09 Score=97.97 Aligned_cols=68 Identities=22% Similarity=0.226 Sum_probs=60.2
Q ss_pred cccccccchhhhhHHHHHcCCcEEEEEEEeCCCC--------cCccccccccCCCCcchhhhhhcccccchhccCCccc
Q 001559 475 GHLFDQFLINEALDIIEAAGGSFHLVKCQVGQST--------EALSFSELEVGADDSAVLDQIIDSLTSLANASENNRD 545 (1053)
Q Consensus 475 gHl~d~~~~n~Aldv~~f~~g~v~lvef~V~~~s--------~~~sl~~lnvt~p~k~~l~~~ld~~~~~a~~~g~~n~ 545 (1053)
+||+||.+||.+ ++..+.+..|..|.+.+++ +...+.++|||+|||+.+++++|++++.|+.+|+|||
T Consensus 7 ~hS~SP~~hn~~---f~~~g~~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~~VT~P~K~~~~~~~D~~~~~A~~igAvNt 82 (83)
T PF08501_consen 7 SHSLSPLIHNAA---FEALGLDAVYIPFEVEPEDLEDFLDALRAPNFRGLNVTMPHKEAAIPYLDELSPSAKAIGAVNT 82 (83)
T ss_dssp TT-SHHHHHHHH---HHHTTSSEEEEEEETSTTCHHHHHHHHHHTTESEEEE-TTSTTHHGGGSSEE-HHHHHHTS-SE
T ss_pred ccccCHHHHHHH---HHHcCCCcEEEEeecCHHHHHHHHHHHhcCCCCeeeecchHHHHHHHHhccCCHHHHHhCCccc
Confidence 599999999999 8999999999999999877 5588999999999999999999999999999999996
|
Shikimate dehydrogenase catalyses the fourth step of the mycobacterial Shikimate pathway, which results in the biosynthesis of chorismate. Chorismate is a precursor of aromatic amino acids, naphthoquinones, menaquinones and mycobactins [, ]. This pathway is an important target for antibacterial agents, especially against Mycobacterium tuberculosis, since it does not occur in mammals.; GO: 0004764 shikimate 3-dehydrogenase (NADP+) activity, 0055114 oxidation-reduction process; PDB: 3U62_A 2EGG_A 1P74_B 1P77_A 3O8Q_A 3TNL_C 3TOZ_G 1NYT_C 1VI2_B 1NPD_A .... |
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.3e-08 Score=106.98 Aligned_cols=141 Identities=21% Similarity=0.173 Sum_probs=106.6
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCC-CCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFG-SPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
++||.|||+|.+|+.+++.|.+.+ .+ ..+.|++|+.++++++.+.+. ... ..+
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~~~~------------------elv~v~d~~~~~a~~~a~~~~-~~~-------~~~ 54 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGRINA------------------ELYAFYDRNLEKAENLASKTG-AKA-------CLS 54 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCCCCe------------------EEEEEECCCHHHHHHHHHhcC-Cee-------ECC
Confidence 368999999999999999988653 22 137789999999998877543 221 123
Q ss_pred HHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeec----cChhHHHHHHHHHHcCCeEEecCCCChhHHHHHHHHH
Q 001559 653 LCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASY----IDDSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKM 728 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy----~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla~~~ 728 (1053)
+.+++.++|+|+.|+|...+..+...++++|+|++.++. ..+...+|.+.|++.|+.++...|.-.|++.+-+.
T Consensus 55 ~~ell~~~DvVvi~a~~~~~~~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~sga~~g~d~i~a~-- 132 (265)
T PRK13304 55 IDELVEDVDLVVECASVNAVEEVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCKIYLPSGAIVGLDGIKAA-- 132 (265)
T ss_pred HHHHhcCCCEEEEcCChHHHHHHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEEeCchHHhHHHHHHH--
Confidence 455667899999999999999999999999999999874 23445688899999999998888876777655322
Q ss_pred HHHhhhccCceEEEEeeccC
Q 001559 729 INHAHVRKGKIKSFTSYCGG 748 (1053)
Q Consensus 729 i~~~~~~~~~v~sf~~~~Gg 748 (1053)
..+++.++.+++..
T Consensus 133 ------~~G~i~~V~~~~~k 146 (265)
T PRK13304 133 ------SLGEIKSVTLTTRK 146 (265)
T ss_pred ------hcCCccEEEEEEec
Confidence 23567777766543
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.4e-07 Score=105.09 Aligned_cols=140 Identities=21% Similarity=0.189 Sum_probs=103.6
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhC-CCCCcccccccccccccCCCccE-EEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASF-GSPSHQMQKTCMETDFEWQNDIR-VLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~-v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
+++||.|||+|.+|+.+++.|.+. ++ .+ +.|++|++++++++++.++.... .
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~-------------------~el~aV~dr~~~~a~~~a~~~g~~~~-------~ 58 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPG-------------------LTLSAVAVRDPQRHADFIWGLRRPPP-------V 58 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCC-------------------eEEEEEECCCHHHHHHHHHhcCCCcc-------c
Confidence 357999999999999999999863 32 34 45899999999988877642111 1
Q ss_pred HHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeeccC-hhHHHHHHHHHHcCCeEEecCCCChhHHHHHHHHHH
Q 001559 651 KSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYID-DSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMI 729 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~-~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla~~~i 729 (1053)
.++.++++++|+|+.|+|...|..+...++++|+|++..+... .+..+|.+.|++.|+.+....|+--|+|.+-
T Consensus 59 ~~~eell~~~D~Vvi~tp~~~h~e~~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l~v~sGa~~g~d~l~----- 133 (271)
T PRK13302 59 VPLDQLATHADIVVEAAPASVLRAIVEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQIIVPTGALLGLDAVT----- 133 (271)
T ss_pred CCHHHHhcCCCEEEECCCcHHHHHHHHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCEEEEcchHHHhHHHHH-----
Confidence 2345566789999999999999999999999999999876432 2467888999999999988877655554322
Q ss_pred HHhhhccCceEEEEeec
Q 001559 730 NHAHVRKGKIKSFTSYC 746 (1053)
Q Consensus 730 ~~~~~~~~~v~sf~~~~ 746 (1053)
.. ..+++..+.+.+
T Consensus 134 -~g--~iG~~~~v~~~t 147 (271)
T PRK13302 134 -AA--AEGTIHSVKMIT 147 (271)
T ss_pred -HH--HcCCceEEEEEE
Confidence 11 224566666544
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.3e-06 Score=98.12 Aligned_cols=137 Identities=18% Similarity=0.219 Sum_probs=95.3
Q ss_pred CCCCeEEEEEccchhHHHHHHHHhhCCCceecCCCchhhhhcccccCCCCcccceEEEeeeecccccccccCCCCCcccc
Q 001559 202 GICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFGKAKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKA 281 (1053)
Q Consensus 202 ~~~p~~v~i~G~G~vg~gA~~~~~~LGa~~V~~~dl~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~~~~~~~~~~ 281 (1053)
++.-.+++|+|.|.+|+..+..++.+|++ |...+-..... ..... . ++.
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~~-V~v~~R~~~~~------------------------~~~~~-~---g~~-- 196 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGAR-VFVGARSSADL------------------------ARITE-M---GLI-- 196 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCCE-EEEEeCCHHHH------------------------HHHHH-C---CCe--
Confidence 34457899999999999999999999996 55544211000 00000 0 010
Q ss_pred ccccCccCcCcchhhhccCCCcEEEEcccccCCCCcccCHHHHHHhhcCCCCceEEEEEeecCCCc-eeeecccccccCC
Q 001559 282 DYYAHPEHYNPVFHKKIAPYASVIVNCMYWEQRFPRLLSTQQLQDLVRKGCPLVGISDITCDIGGS-LEFVNRTTSIDSS 360 (1053)
Q Consensus 282 ~~~~~p~~~~~~f~~~~~~~~DilIn~a~~g~~~P~Lit~~~v~~m~k~~~~gsvIvDis~D~gG~-iE~t~~~tti~~P 360 (1053)
+-.+. .+ .+.++.+|+||||+-.+ ++++++++.| + ++.+|+|+++++||. ++..
T Consensus 197 -----~~~~~-~l-~~~l~~aDiVint~P~~-----ii~~~~l~~~-k---~~aliIDlas~Pg~tdf~~A--------- 251 (287)
T TIGR02853 197 -----PFPLN-KL-EEKVAEIDIVINTIPAL-----VLTADVLSKL-P---KHAVIIDLASKPGGTDFEYA--------- 251 (287)
T ss_pred -----eecHH-HH-HHHhccCCEEEECCChH-----HhCHHHHhcC-C---CCeEEEEeCcCCCCCCHHHH---------
Confidence 00011 11 34567899999997332 6788888886 5 689999999999883 3221
Q ss_pred eEEeCCCCCCcCCCCCCCCeEEEecCChhhHH-HHHHHHHHHHHHHHHHH
Q 001559 361 FFRYDPLSDSYHDDLEGNGLVCQAVDTLPTEF-AKEASQHFGDILLEFIG 409 (1053)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~gV~i~~vdnLPs~l-p~~AS~~fs~~l~~~l~ 409 (1053)
...|+.++..++||..+ |.+|.+.+++.+..+|.
T Consensus 252 ---------------k~~G~~a~~~~glPg~~ap~ta~~i~~~~~~~~~~ 286 (287)
T TIGR02853 252 ---------------KKRGIKALLAPGLPGIVAPKTAGKILANVLSELLL 286 (287)
T ss_pred ---------------HHCCCEEEEeCCCCcccCchhHHHHHHHHHHHHhh
Confidence 23599999999999999 99999999999988774
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.1e-07 Score=102.84 Aligned_cols=132 Identities=17% Similarity=0.197 Sum_probs=97.0
Q ss_pred CCeEEEEcC-chhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 574 TSSVLIIGA-GRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiGa-G~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
++||+|+|+ |++|+.+++.+.+.+++ .-+.+++++.+++... .. .++...++
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~------------------elvav~d~~~~~~~~~-~~--------~~i~~~~d 53 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDL------------------ELVAAVDRPGSPLVGQ-GA--------LGVAITDD 53 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCC------------------EEEEEEecCCcccccc-CC--------CCccccCC
Confidence 368999998 99999999998776533 2466788887665443 11 12222355
Q ss_pred HHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEee--ccChhHHHHHHHHHHcCCeEEecCCCChhHHHHHHHHHHH
Q 001559 653 LCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTAS--YIDDSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMIN 730 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~s--y~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla~~~i~ 730 (1053)
+.++++++|+||+++|+..+.+++..|+++|+|++..+ +...+...|.+.++..++.+...+.+.+++...++.++..
T Consensus 54 l~~ll~~~DvVid~t~p~~~~~~~~~al~~G~~vvigttG~s~~~~~~l~~aa~~~~v~~s~n~s~g~~~~~~l~~~aa~ 133 (257)
T PRK00048 54 LEAVLADADVLIDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLAELEEAAKKIPVVIAPNFSIGVNLLMKLAEKAAK 133 (257)
T ss_pred HHHhccCCCEEEECCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhcCCCEEEECcchHHHHHHHHHHHHHHH
Confidence 67777789999999999988999999999999998653 3456677787766677777777777777777777776664
Q ss_pred Hh
Q 001559 731 HA 732 (1053)
Q Consensus 731 ~~ 732 (1053)
.+
T Consensus 134 ~l 135 (257)
T PRK00048 134 YL 135 (257)
T ss_pred hc
Confidence 44
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.1e-07 Score=100.18 Aligned_cols=116 Identities=22% Similarity=0.247 Sum_probs=87.8
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
+...++|+|+|+|++|+.+++.|...| .+|++++|+.+++++..+. ....+ +.
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G--------------------~~V~v~~R~~~~~~~~~~~--g~~~~-----~~ 200 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALG--------------------ARVFVGARSSADLARITEM--GLIPF-----PL 200 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHC--CCeee-----cH
Confidence 345689999999999999999999887 3899999998876655432 12221 34
Q ss_pred HHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeeccChhHHHHHHHHHHcCCeEEecCC
Q 001559 651 KSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGEMG 715 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~l~g~G 715 (1053)
+++.+.++++|+||+++|..+...-....++.+..++|++|.+..+.. +.|++.|+..+..-|
T Consensus 201 ~~l~~~l~~aDiVint~P~~ii~~~~l~~~k~~aliIDlas~Pg~tdf--~~Ak~~G~~a~~~~g 263 (287)
T TIGR02853 201 NKLEEKVAEIDIVINTIPALVLTADVLSKLPKHAVIIDLASKPGGTDF--EYAKKRGIKALLAPG 263 (287)
T ss_pred HHHHHHhccCCEEEECCChHHhCHHHHhcCCCCeEEEEeCcCCCCCCH--HHHHHCCCEEEEeCC
Confidence 567888999999999999865322233456778899999998877644 699999999885333
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.7e-07 Score=95.10 Aligned_cols=107 Identities=17% Similarity=0.167 Sum_probs=83.8
Q ss_pred CCCCCeEEEEcC-chhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC---CceEEEec
Q 001559 571 TKGTSSVLIIGA-GRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP---NAEAVQLD 646 (1053)
Q Consensus 571 ~~~~~~VlIiGa-G~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~---~~~~~~~d 646 (1053)
..+.++++|+|+ |++|+.+++.|++.+ .+|.+++|+.++++++.+.+. +.+...+|
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g--------------------~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~ 84 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREG--------------------ARVVLVGRDLERAQKAADSLRARFGEGVGAVE 84 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEcCCHHHHHHHHHHHHhhcCCcEEEee
Confidence 456789999995 999999999999876 389999999999988877553 34566678
Q ss_pred CCCHHHHHHhhccccEEEecCCccccH-HHHHHHHHhCCeEEEeeccChhHH
Q 001559 647 VSDHKSLCKCISQVEIVISLLPASCHV-MVANACIEFKKHLVTASYIDDSMS 697 (1053)
Q Consensus 647 ~~d~~~l~~~i~~~DvVI~~~p~~~~~-~v~~aci~~g~~~vD~sy~~~~~~ 697 (1053)
..+.+++.+.++++|+||+++|.++.. .....+.+.++.++|++|.++...
T Consensus 85 ~~~~~~~~~~~~~~diVi~at~~g~~~~~~~~~~~~~~~vv~D~~~~~~~~~ 136 (194)
T cd01078 85 TSDDAARAAAIKGADVVFAAGAAGVELLEKLAWAPKPLAVAADVNAVPPVGI 136 (194)
T ss_pred CCCHHHHHHHHhcCCEEEECCCCCceechhhhcccCceeEEEEccCCCCCCc
Confidence 888888889999999999999988752 222334445778999999775443
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.7e-06 Score=83.71 Aligned_cols=113 Identities=27% Similarity=0.298 Sum_probs=90.0
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCcc-EEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDI-RVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~-~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
.||+|||+|.+|+.....+.+..+ +. -+.|+++++++++++.+.+. +... .++
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~------------------~~~v~~v~d~~~~~~~~~~~~~~-~~~~-------~~~ 54 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSP------------------DFEVVAVCDPDPERAEAFAEKYG-IPVY-------TDL 54 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTT------------------TEEEEEEECSSHHHHHHHHHHTT-SEEE-------SSH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCC------------------CcEEEEEEeCCHHHHHHHHHHhc-ccch-------hHH
Confidence 379999999999999988887731 12 35789999999999887764 3321 234
Q ss_pred HHhhc--cccEEEecCCccccHHHHHHHHHhCCeEEEee---ccChhHHHHHHHHHHcCCeEEec
Q 001559 654 CKCIS--QVEIVISLLPASCHVMVANACIEFKKHLVTAS---YIDDSMSKLDEKAKGAGITILGE 713 (1053)
Q Consensus 654 ~~~i~--~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~s---y~~~~~~~L~~~Ak~~Gv~~l~g 713 (1053)
.++++ +.|+|+-++|...|..++..|+++|+|++.-. ...++..+|.+.|+++|+.++.+
T Consensus 55 ~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~~Vg 119 (120)
T PF01408_consen 55 EELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVKVMVG 119 (120)
T ss_dssp HHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCEEEE
T ss_pred HHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEEEEe
Confidence 55665 79999999999999999999999999987764 34567788999999999987653
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.1e-06 Score=98.12 Aligned_cols=146 Identities=23% Similarity=0.288 Sum_probs=108.5
Q ss_pred CCCeEEEEcCchhh-HHHHHHHHhCCC-CCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 573 GTSSVLIIGAGRVC-RPAAELLASFGS-PSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg-~~ia~~L~~~g~-~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
++.||.|||+|+++ ...+..+...+. + .-+.+++++.++++++++.++- . ...
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~------------------~~vav~d~~~~~a~~~a~~~~~-~------~~~ 56 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGL------------------ELVAVVDRDPERAEAFAEEFGI-A------KAY 56 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCce------------------EEEEEecCCHHHHHHHHHHcCC-C------ccc
Confidence 46799999998555 567778877652 1 3688899999999999998762 2 112
Q ss_pred HHHHHhhcc--ccEEEecCCccccHHHHHHHHHhCCeEEEee---ccChhHHHHHHHHHHcCCeEEecC--CCChhHHHH
Q 001559 651 KSLCKCISQ--VEIVISLLPASCHVMVANACIEFKKHLVTAS---YIDDSMSKLDEKAKGAGITILGEM--GLDPGIDHM 723 (1053)
Q Consensus 651 ~~l~~~i~~--~DvVI~~~p~~~~~~v~~aci~~g~~~vD~s---y~~~~~~~L~~~Ak~~Gv~~l~g~--G~dPGi~~m 723 (1053)
.++.+++++ .|+|+.++|..+|.+++.+|+++|+|++.-- ....+..+|.+.|+++|+.+..+. .++|.+-.
T Consensus 57 ~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l~v~~~~Rf~p~~~~- 135 (342)
T COG0673 57 TDLEELLADPDIDAVYIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKAGVKLMVGFNRRFDPAVQA- 135 (342)
T ss_pred CCHHHHhcCCCCCEEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCceeeehhhhcCHHHHH-
Confidence 446666764 7999999999999999999999999998865 345677889999999999888764 57776543
Q ss_pred HHHHHHHHhhhccCceEEEEeecc
Q 001559 724 MAMKMINHAHVRKGKIKSFTSYCG 747 (1053)
Q Consensus 724 la~~~i~~~~~~~~~v~sf~~~~G 747 (1053)
++.++++. ..+++.++.....
T Consensus 136 -~k~li~~g--~lG~v~~~~~~~~ 156 (342)
T COG0673 136 -LKELIDSG--ALGEVVSVQASFS 156 (342)
T ss_pred -HHHHHhcC--CcCceEEEEEEee
Confidence 33445432 3467777765443
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.1e-06 Score=90.51 Aligned_cols=110 Identities=25% Similarity=0.244 Sum_probs=80.4
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
|++|.+||.|.+|+++++.|++.+ .+|.++||++++++++.+.- +.. + +++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g--------------------~~v~~~d~~~~~~~~~~~~g--~~~--~-----~s~ 51 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAG--------------------YEVTVYDRSPEKAEALAEAG--AEV--A-----DSP 51 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTT--------------------TEEEEEESSHHHHHHHHHTT--EEE--E-----SSH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcC--------------------CeEEeeccchhhhhhhHHhh--hhh--h-----hhh
Confidence 578999999999999999999887 38999999999999988762 222 2 456
Q ss_pred HHhhccccEEEecCCcccc-HHHH-----HHHHHhCCeEEEeeccCh-hHHHHHHHHHHcCCeEEe
Q 001559 654 CKCISQVEIVISLLPASCH-VMVA-----NACIEFKKHLVTASYIDD-SMSKLDEKAKGAGITILG 712 (1053)
Q Consensus 654 ~~~i~~~DvVI~~~p~~~~-~~v~-----~aci~~g~~~vD~sy~~~-~~~~L~~~Ak~~Gv~~l~ 712 (1053)
.++++++|+|+.|+|..-. ..+. ...++.|+.++|++..++ ..+++.+.++++|+.++.
T Consensus 52 ~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vd 117 (163)
T PF03446_consen 52 AEAAEQADVVILCVPDDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVD 117 (163)
T ss_dssp HHHHHHBSEEEE-SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEE
T ss_pred hhHhhcccceEeecccchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeee
Confidence 7788889999999997543 2332 233567899999997655 456788889999988776
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.8e-06 Score=94.78 Aligned_cols=142 Identities=20% Similarity=0.198 Sum_probs=100.9
Q ss_pred CCeEEEEcCchhhH-HHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 574 TSSVLIIGAGRVCR-PAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~-~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
+.||.|||+|.+|+ ..+..+...+++ .-+.|++++.+++. +.++.... ..+
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~~~------------------~l~av~d~~~~~~~---~~~~~~~~-------~~~ 55 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTPGL------------------ELAAVSSSDATKVK---ADWPTVTV-------VSE 55 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCC------------------EEEEEECCCHHHHH---hhCCCCce-------eCC
Confidence 46999999999997 467777665422 13568999987654 34443222 134
Q ss_pred HHHhhc--cccEEEecCCccccHHHHHHHHHhCCeEEEeec---cChhHHHHHHHHHHcCCeEEec--CCCChhHHHHHH
Q 001559 653 LCKCIS--QVEIVISLLPASCHVMVANACIEFKKHLVTASY---IDDSMSKLDEKAKGAGITILGE--MGLDPGIDHMMA 725 (1053)
Q Consensus 653 l~~~i~--~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy---~~~~~~~L~~~Ak~~Gv~~l~g--~G~dPGi~~mla 725 (1053)
++++++ +.|+|+.|+|..+|.+++..|+++|+|++.-.- ...+..+|.+.|+++|+.+..+ ..++|.+-.+
T Consensus 56 ~~ell~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l~v~~~~R~~p~~~~~-- 133 (346)
T PRK11579 56 PQHLFNDPNIDLIVIPTPNDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVLSVFHNRRWDSDFLTL-- 133 (346)
T ss_pred HHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEeeccCCHHHHHH--
Confidence 556665 589999999999999999999999999987543 3467788989999999988765 4678876544
Q ss_pred HHHHHHhhhccCceEEEEeecc
Q 001559 726 MKMINHAHVRKGKIKSFTSYCG 747 (1053)
Q Consensus 726 ~~~i~~~~~~~~~v~sf~~~~G 747 (1053)
++++++. ..|++..+..+++
T Consensus 134 k~~i~~g--~iG~i~~~~~~~~ 153 (346)
T PRK11579 134 KALLAEG--VLGEVAYFESHFD 153 (346)
T ss_pred HHHHhcC--CCCCeEEEEEEec
Confidence 3445432 3467777766543
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.6e-06 Score=95.05 Aligned_cols=115 Identities=18% Similarity=0.228 Sum_probs=85.9
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
...++|+|||+|.+|+.++..|...| .+|++++|+.++.+.. +.++ ++.+ +.+
T Consensus 150 l~g~kvlViG~G~iG~~~a~~L~~~G--------------------a~V~v~~r~~~~~~~~-~~~G-~~~~-----~~~ 202 (296)
T PRK08306 150 IHGSNVLVLGFGRTGMTLARTLKALG--------------------ANVTVGARKSAHLARI-TEMG-LSPF-----HLS 202 (296)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHH-HHcC-Ceee-----cHH
Confidence 44689999999999999999999887 3899999998765543 3332 3322 235
Q ss_pred HHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeeccChhHHHHHHHHHHcCCeEEecCC
Q 001559 652 SLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGEMG 715 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~l~g~G 715 (1053)
++.+.++++|+|||++|..+-..-....++.+..++|++|.+..+ .+ +.|++.|++++.--|
T Consensus 203 ~l~~~l~~aDiVI~t~p~~~i~~~~l~~~~~g~vIIDla~~pggt-d~-~~a~~~Gv~~~~~~~ 264 (296)
T PRK08306 203 ELAEEVGKIDIIFNTIPALVLTKEVLSKMPPEALIIDLASKPGGT-DF-EYAEKRGIKALLAPG 264 (296)
T ss_pred HHHHHhCCCCEEEECCChhhhhHHHHHcCCCCcEEEEEccCCCCc-Ce-eehhhCCeEEEEECC
Confidence 678889999999999997543222334567889999999987665 34 688999999984333
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.2e-06 Score=92.30 Aligned_cols=125 Identities=18% Similarity=0.139 Sum_probs=87.3
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC-CceEEEecCCCHHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~~~~~~d~~d~~~ 652 (1053)
++||.|+|+|.+|+.+++.|.+.+.. .-+.++.+... .++..+.+. .+.+ ..|.+.
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~~~------------------~l~~v~~~~~~-~~~~~~~~~~~~~~----~~d~~~ 57 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDPDL------------------RVDWVIVPEHS-IDAVRRALGEAVRV----VSSVDA 57 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCCCc------------------eEEEEEEcCCC-HHHHhhhhccCCee----eCCHHH
Confidence 46899999999999999999876532 12334444321 122222221 1111 123343
Q ss_pred HHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeec---cChh-HHHHHHHHHHcCCeEEecCCCChhHHHHH
Q 001559 653 LCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASY---IDDS-MSKLDEKAKGAGITILGEMGLDPGIDHMM 724 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy---~~~~-~~~L~~~Ak~~Gv~~l~g~G~dPGi~~ml 724 (1053)
+ -.+.|+||.|+|...|.+.+..|+++|+|++..+- ..++ ...|.+.|++.|+.++...|...|++-+-
T Consensus 58 l---~~~~DvVve~t~~~~~~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v~sga~gg~d~l~ 130 (265)
T PRK13303 58 L---PQRPDLVVECAGHAALKEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGARLHLLSGAIGGIDALA 130 (265)
T ss_pred h---ccCCCEEEECCCHHHHHHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEEeChHhhCHHHHH
Confidence 3 35699999999999899999999999999998864 2343 35688899999999999888888877664
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.9e-06 Score=93.29 Aligned_cols=126 Identities=17% Similarity=0.145 Sum_probs=90.2
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH-HH----HHHHHhcCCCceEEEecCC
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL-KD----AEEVIEGIPNAEAVQLDVS 648 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~-~~----a~~l~~~~~~~~~~~~d~~ 648 (1053)
+||+|+| +|++|+.+++.+.+.+++ .-+.+++|.. .. +.++....+ ..+.. ..
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~------------------elvav~d~~~~~~~~~~~~~~~~~~~-~gv~~--~~ 60 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGL------------------QLVAAFERHGSSLQGTDAGELAGIGK-VGVPV--TD 60 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCC------------------EEEEEEecCCccccCCCHHHhcCcCc-CCcee--eC
Confidence 6899999 699999999999876533 1456677532 22 112211111 11110 12
Q ss_pred CHHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEee--ccChhHHHHHHHHHHcCCeEEecCCCChhHHHHH
Q 001559 649 DHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTAS--YIDDSMSKLDEKAKGAGITILGEMGLDPGIDHMM 724 (1053)
Q Consensus 649 d~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~s--y~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~ml 724 (1053)
|.+ ++...+|+||+++|+..+...+..|+++|+|+|..+ +...+..+|.+.|+++|+.++.+..|+.|+.-|+
T Consensus 61 d~~---~l~~~~DvVIdfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~NfSlGv~ll~ 135 (266)
T TIGR00036 61 DLE---AVETDPDVLIDFTTPEGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPNFSIGVNLMF 135 (266)
T ss_pred CHH---HhcCCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECcccHHHHHHH
Confidence 333 333569999999999999999999999999999754 5556778898899999999999999999987554
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.8e-06 Score=91.99 Aligned_cols=110 Identities=22% Similarity=0.276 Sum_probs=84.9
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
++|.+||.|.+|.++|..|.+.| ..|+|+||+++++.+.+.... +.. ..+..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG--------------------~~v~v~~r~~~ka~~~~~~~G-a~~-------a~s~~ 52 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAG--------------------HEVTVYNRTPEKAAELLAAAG-ATV-------AASPA 52 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCC--------------------CEEEEEeCChhhhhHHHHHcC-Ccc-------cCCHH
Confidence 47999999999999999999998 389999999999655554433 111 13446
Q ss_pred HhhccccEEEecCCccccHH-HH------HHHHHhCCeEEEeeccCh-hHHHHHHHHHHcCCeEEe
Q 001559 655 KCISQVEIVISLLPASCHVM-VA------NACIEFKKHLVTASYIDD-SMSKLDEKAKGAGITILG 712 (1053)
Q Consensus 655 ~~i~~~DvVI~~~p~~~~~~-v~------~aci~~g~~~vD~sy~~~-~~~~L~~~Ak~~Gv~~l~ 712 (1053)
++++++|+||.|+|..-+.. +. ...++.|+.+||+|.++| ..+++.+.+++.|+.++.
T Consensus 53 eaa~~aDvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lD 118 (286)
T COG2084 53 EAAAEADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLD 118 (286)
T ss_pred HHHHhCCEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEe
Confidence 78889999999999875522 22 122457999999998765 457899999999998886
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=98.17 E-value=6.9e-06 Score=89.18 Aligned_cols=121 Identities=15% Similarity=0.091 Sum_probs=81.4
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC----HHHH-------HHHHhcCCC
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY----LKDA-------EEVIEGIPN 639 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~----~~~a-------~~l~~~~~~ 639 (1053)
..+.++|+|+|+|.+|+.+++.|.+.| + ...++.++||+ .+++ +++++.+..
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G-~----------------~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~ 84 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAG-A----------------KPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNP 84 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcC-c----------------CcceEEEEeCCCccccccchhhhHHHHHHHHHhcc
Confidence 356789999999999999999999887 2 01269999998 4554 344444321
Q ss_pred ceEEEecCCCHHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeeccChhHHHHHHHHHHcCCe-EEecCCCC
Q 001559 640 AEAVQLDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGIT-ILGEMGLD 717 (1053)
Q Consensus 640 ~~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~-~l~g~G~d 717 (1053)
. +. + .++.+.++++|+||+++|.++..+.....+..+..++|++ +|..+ .+.+.|++.|+. +..|.++-
T Consensus 85 -~----~~-~-~~l~~~l~~~dvlIgaT~~G~~~~~~l~~m~~~~ivf~ls-nP~~e-~~~~~A~~~ga~i~a~G~~~~ 154 (226)
T cd05311 85 -E----KT-G-GTLKEALKGADVFIGVSRPGVVKKEMIKKMAKDPIVFALA-NPVPE-IWPEEAKEAGADIVATGRSDF 154 (226)
T ss_pred -C----cc-c-CCHHHHHhcCCEEEeCCCCCCCCHHHHHhhCCCCEEEEeC-CCCCc-CCHHHHHHcCCcEEEeCCCCC
Confidence 1 11 1 2465677889999999987665332223333555667776 65443 466899999995 77887653
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.9e-05 Score=91.11 Aligned_cols=143 Identities=18% Similarity=0.120 Sum_probs=98.4
Q ss_pred CeEEEEcCchhhH-HHHHHHHhC-CCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 575 SSVLIIGAGRVCR-PAAELLASF-GSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 575 ~~VlIiGaG~vg~-~ia~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
.||.|||+|.++. ..+..+... ..+ .-+.|+|++.+++ +.++.++.+.+ ..+
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~------------------~l~av~d~~~~~~-~~~~~~~~~~~-------~~~ 55 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSW------------------HVAHIFRRHAKPE-EQAPIYSHIHF-------TSD 55 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCE------------------EEEEEEcCChhHH-HHHHhcCCCcc-------cCC
Confidence 5899999998764 345555333 212 1356899987654 55665543321 134
Q ss_pred HHHhhc--cccEEEecCCccccHHHHHHHHHhCCeEEEeec---cChhHHHHHHHHHHcCCeEEecC--CCChhHHHHHH
Q 001559 653 LCKCIS--QVEIVISLLPASCHVMVANACIEFKKHLVTASY---IDDSMSKLDEKAKGAGITILGEM--GLDPGIDHMMA 725 (1053)
Q Consensus 653 l~~~i~--~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy---~~~~~~~L~~~Ak~~Gv~~l~g~--G~dPGi~~mla 725 (1053)
+.++++ +.|+|+.|+|...|.+++..|+++|+|++.-.- ...+..+|.+.|+++|+.+..+. -++|..- .+
T Consensus 56 ~~ell~~~~iD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~v~~~~R~~p~~~--~~ 133 (344)
T PRK10206 56 LDEVLNDPDVKLVVVCTHADSHFEYAKRALEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTVTPYQNRRFDSCFL--TA 133 (344)
T ss_pred HHHHhcCCCCCEEEEeCCchHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEEEEEEeeeECHHHH--HH
Confidence 566664 689999999999999999999999999987643 34677889899999999987654 5777543 33
Q ss_pred HHHHHHhhhccCceEEEEeecc
Q 001559 726 MKMINHAHVRKGKIKSFTSYCG 747 (1053)
Q Consensus 726 ~~~i~~~~~~~~~v~sf~~~~G 747 (1053)
++++++. ..|++.++...++
T Consensus 134 k~li~~g--~iG~i~~i~~~~~ 153 (344)
T PRK10206 134 KKAIESG--KLGEIVEVESHFD 153 (344)
T ss_pred HHHHHcC--CCCCeEEEEEEec
Confidence 4455432 3467777776543
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.8e-05 Score=73.72 Aligned_cols=91 Identities=19% Similarity=0.173 Sum_probs=69.3
Q ss_pred eEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEE-ECCHHHHHHHHhcCCCceEEEecCCCHHHHH
Q 001559 576 SVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVA-SLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 576 ~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~-~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
||.|||+|.+|.++++.|.+.+. ...+|.++ +|++++++++.+.++ +.+.. .+..
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~-----------------~~~~v~~~~~r~~~~~~~~~~~~~-~~~~~------~~~~ 56 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGI-----------------KPHEVIIVSSRSPEKAAELAKEYG-VQATA------DDNE 56 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS------------------GGEEEEEEESSHHHHHHHHHHCT-TEEES------EEHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-----------------CceeEEeeccCcHHHHHHHHHhhc-ccccc------CChH
Confidence 68999999999999999998861 12478855 999999999998876 23221 1345
Q ss_pred HhhccccEEEecCCccccHHHHHHH--HHhCCeEEEee
Q 001559 655 KCISQVEIVISLLPASCHVMVANAC--IEFKKHLVTAS 690 (1053)
Q Consensus 655 ~~i~~~DvVI~~~p~~~~~~v~~ac--i~~g~~~vD~s 690 (1053)
++++++|+||.|+|+.....+.... ...++.+||++
T Consensus 57 ~~~~~advvilav~p~~~~~v~~~i~~~~~~~~vis~~ 94 (96)
T PF03807_consen 57 EAAQEADVVILAVKPQQLPEVLSEIPHLLKGKLVISIA 94 (96)
T ss_dssp HHHHHTSEEEE-S-GGGHHHHHHHHHHHHTTSEEEEES
T ss_pred HhhccCCEEEEEECHHHHHHHHHHHhhccCCCEEEEeC
Confidence 6777999999999998877776554 67889999875
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.11 E-value=9.7e-06 Score=92.81 Aligned_cols=105 Identities=18% Similarity=0.227 Sum_probs=79.0
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC---CceEEEecCCC
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP---NAEAVQLDVSD 649 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~---~~~~~~~d~~d 649 (1053)
..++++|||+|.+|+..+..++....+ .+|.|++|++++++++++.+. ++++..+
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~------------------~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~---- 183 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDI------------------ERVRVYSRTFEKAYAFAQEIQSKFNTEIYVV---- 183 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCc------------------cEEEEECCCHHHHHHHHHHHHHhcCCcEEEe----
Confidence 467899999999999999887654323 389999999999999887542 2332222
Q ss_pred HHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeeccChhHHHHHHH
Q 001559 650 HKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEK 702 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~~~~~~L~~~ 702 (1053)
+++.++++++|+||+|||.. ++.+. .++++|+|+.-+....+.+.++...
T Consensus 184 -~~~~~~~~~aDiVi~aT~s~-~p~i~-~~l~~G~hV~~iGs~~p~~~E~~~~ 233 (325)
T PRK08618 184 -NSADEAIEEADIIVTVTNAK-TPVFS-EKLKKGVHINAVGSFMPDMQELPSE 233 (325)
T ss_pred -CCHHHHHhcCCEEEEccCCC-CcchH-HhcCCCcEEEecCCCCcccccCCHH
Confidence 33567778999999999976 67777 9999999998886555555555443
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=5.4e-05 Score=80.08 Aligned_cols=138 Identities=21% Similarity=0.232 Sum_probs=103.9
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
++|.|+|+|.+|..+++.+.+.. . +++ .+.|.||+.+++.++.+.++... ..++.
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~-~-----------~~e-----~v~v~D~~~ek~~~~~~~~~~~~--------~s~id 55 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGR-V-----------DFE-----LVAVYDRDEEKAKELEASVGRRC--------VSDID 55 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCC-c-----------cee-----EEEEecCCHHHHHHHHhhcCCCc--------cccHH
Confidence 46999999999999999886542 1 122 68999999999999988876421 13456
Q ss_pred HhhccccEEEecCCccccHHHHHHHHHhCCeEEEeec---cChhH-HHHHHHHHHcCCeEEecCCCChhHHHHHHHHHHH
Q 001559 655 KCISQVEIVISLLPASCHVMVANACIEFKKHLVTASY---IDDSM-SKLDEKAKGAGITILGEMGLDPGIDHMMAMKMIN 730 (1053)
Q Consensus 655 ~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy---~~~~~-~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla~~~i~ 730 (1053)
+++++.|+||.|+....-......++++|++++-+|. ..+.. ..+.+.||..|..+..-.|---|+|-+.+.+
T Consensus 56 e~~~~~DlvVEaAS~~Av~e~~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pSGAiGGlD~l~aar--- 132 (255)
T COG1712 56 ELIAEVDLVVEAASPEAVREYVPKILKAGIDVIVMSVGALADEGLRERLRELAKCGGARVYLPSGAIGGLDALAAAR--- 132 (255)
T ss_pred HHhhccceeeeeCCHHHHHHHhHHHHhcCCCEEEEechhccChHHHHHHHHHHhcCCcEEEecCccchhHHHHHHhh---
Confidence 7778999999999887666777888999999998884 23333 3466789999999888778777888776543
Q ss_pred HhhhccCceEEEEee
Q 001559 731 HAHVRKGKIKSFTSY 745 (1053)
Q Consensus 731 ~~~~~~~~v~sf~~~ 745 (1053)
-+.++++.+-
T Consensus 133 -----~g~i~~V~lt 142 (255)
T COG1712 133 -----VGGIEEVVLT 142 (255)
T ss_pred -----cCCeeEEEEE
Confidence 1457776653
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.2e-05 Score=91.24 Aligned_cols=96 Identities=27% Similarity=0.368 Sum_probs=75.6
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
+.+.++|+|||+|-||..+|.+|.+.| + ..|+|++|+.++|++++..+. .+++ ..
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g-~------------------~~i~IaNRT~erA~~La~~~~-~~~~-----~l 229 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKG-V------------------KKITIANRTLERAEELAKKLG-AEAV-----AL 229 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCC-C------------------CEEEEEcCCHHHHHHHHHHhC-Ceee-----cH
Confidence 356799999999999999999999988 3 389999999999999999986 3433 34
Q ss_pred HHHHHhhccccEEEecCCccc---cHHHHHHHHHhCC--eEEEeec
Q 001559 651 KSLCKCISQVEIVISLLPASC---HVMVANACIEFKK--HLVTASY 691 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~---~~~v~~aci~~g~--~~vD~sy 691 (1053)
+++.+.+.++|+||++|.... .......+++..+ .+||++-
T Consensus 230 ~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiav 275 (414)
T COG0373 230 EELLEALAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAV 275 (414)
T ss_pred HHHHHhhhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecC
Confidence 778899999999999986432 2344455555444 4789874
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.2e-05 Score=80.17 Aligned_cols=71 Identities=27% Similarity=0.285 Sum_probs=63.9
Q ss_pred EEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHHH
Q 001559 577 VLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLCK 655 (1053)
Q Consensus 577 VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~~ 655 (1053)
|+|+| .|.+|+.+++.|.+.+ .+|++..|++++++. .++++.+.+|+.|.+.+.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~--------------------~~V~~~~R~~~~~~~----~~~~~~~~~d~~d~~~~~~ 56 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG--------------------HEVTALVRSPSKAED----SPGVEIIQGDLFDPDSVKA 56 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT--------------------SEEEEEESSGGGHHH----CTTEEEEESCTTCHHHHHH
T ss_pred eEEECCCChHHHHHHHHHHHCC--------------------CEEEEEecCchhccc----ccccccceeeehhhhhhhh
Confidence 78999 5999999999999987 389999999998877 5679999999999999999
Q ss_pred hhccccEEEecCCccc
Q 001559 656 CISQVEIVISLLPASC 671 (1053)
Q Consensus 656 ~i~~~DvVI~~~p~~~ 671 (1053)
.++++|+||++++...
T Consensus 57 al~~~d~vi~~~~~~~ 72 (183)
T PF13460_consen 57 ALKGADAVIHAAGPPP 72 (183)
T ss_dssp HHTTSSEEEECCHSTT
T ss_pred hhhhcchhhhhhhhhc
Confidence 9999999999997543
|
... |
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.9e-05 Score=86.63 Aligned_cols=120 Identities=12% Similarity=0.069 Sum_probs=89.7
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCC-CCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFG-SPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
..||+|+|+ ++|+..++.+.+.+ .+ .-+.|+|++.++++++++.++ +.. . .+
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~------------------eLvaV~d~~~erA~~~A~~~g-i~~----y---~~ 55 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERF------------------ELAGILAQGSERSRALAHRLG-VPL----Y---CE 55 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCc------------------EEEEEEcCCHHHHHHHHHHhC-CCc----c---CC
Confidence 578999999 56998888887754 23 248899999999999999875 321 1 33
Q ss_pred HHHhhccccEEEec----CCccccHHHHHHHHHhCCeEEEeecc-ChhHHHHHHHHHHcCCeEEecCCCChhHH
Q 001559 653 LCKCISQVEIVISL----LPASCHVMVANACIEFKKHLVTASYI-DDSMSKLDEKAKGAGITILGEMGLDPGID 721 (1053)
Q Consensus 653 l~~~i~~~DvVI~~----~p~~~~~~v~~aci~~g~~~vD~sy~-~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~ 721 (1053)
+++++.+.|+++-+ +|.+.|.+++.+|+++|+|++.---. ..+..+|.+.|+++|+.++.. -+.|.+.
T Consensus 56 ~eell~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~v~-~f~p~~~ 128 (343)
T TIGR01761 56 VEELPDDIDIACVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYLVN-TFYPHLP 128 (343)
T ss_pred HHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEEEE-ecCHHHH
Confidence 45556655544444 35679999999999999999887533 367788999999999998864 3777654
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.4e-05 Score=92.18 Aligned_cols=95 Identities=20% Similarity=0.291 Sum_probs=70.3
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
...++|+|||+|++|+.++.+|+..| + ..++|++|+.++++++++.++...++ ..+
T Consensus 179 l~~kkvlviGaG~~a~~va~~L~~~g-~------------------~~I~V~nRt~~ra~~La~~~~~~~~~-----~~~ 234 (414)
T PRK13940 179 ISSKNVLIIGAGQTGELLFRHVTALA-P------------------KQIMLANRTIEKAQKITSAFRNASAH-----YLS 234 (414)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHcC-C------------------CEEEEECCCHHHHHHHHHHhcCCeEe-----cHH
Confidence 45688999999999999999999887 2 37999999999999999987533332 346
Q ss_pred HHHHhhccccEEEecCCccccHHHHHHHHH-hCCeEEEeec
Q 001559 652 SLCKCISQVEIVISLLPASCHVMVANACIE-FKKHLVTASY 691 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~~~~~~v~~aci~-~g~~~vD~sy 691 (1053)
++.+.+.++|+|||||+.... -+-..-++ ....++|++-
T Consensus 235 ~l~~~l~~aDiVI~aT~a~~~-vi~~~~~~~~~~~~iDLav 274 (414)
T PRK13940 235 ELPQLIKKADIIIAAVNVLEY-IVTCKYVGDKPRVFIDISI 274 (414)
T ss_pred HHHHHhccCCEEEECcCCCCe-eECHHHhCCCCeEEEEeCC
Confidence 778889999999999975421 11111112 2346789974
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.2e-05 Score=89.43 Aligned_cols=117 Identities=20% Similarity=0.186 Sum_probs=83.2
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCC--ceEEEecCCC
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPN--AEAVQLDVSD 649 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~--~~~~~~d~~d 649 (1053)
...++|+|||+|.+|+.+++.+...... .+|.|++|++++++++++.+.. ..+..
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~------------------~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~----- 179 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASVRPI------------------KQVRVWGRDPAKAEALAAELRAQGFDAEV----- 179 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhcCCC------------------CEEEEEcCCHHHHHHHHHHHHhcCCceEE-----
Confidence 4468899999999999999877653212 3899999999999999987642 12222
Q ss_pred HHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeeccChhHHHHHHHHHHcCCeEEe
Q 001559 650 HKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILG 712 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~l~ 712 (1053)
.+++.+.++++|+||+|||.. .+.+-...++.|+|+.-+....+.++++.....+++..++.
T Consensus 180 ~~~~~~av~~aDIVi~aT~s~-~pvl~~~~l~~g~~i~~ig~~~~~~~El~~~~~~~a~~~vD 241 (314)
T PRK06141 180 VTDLEAAVRQADIISCATLST-EPLVRGEWLKPGTHLDLVGNFTPDMRECDDEAIRRASVYVD 241 (314)
T ss_pred eCCHHHHHhcCCEEEEeeCCC-CCEecHHHcCCCCEEEeeCCCCcccccCCHHHHhcCcEEEc
Confidence 134566788999999999865 33333467889996443434456777887777777766555
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.6e-05 Score=91.22 Aligned_cols=136 Identities=12% Similarity=0.101 Sum_probs=90.5
Q ss_pred cCCccccccceeecceeeeeeecc----cccCCCCCCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCC
Q 001559 540 SENNRDQISGINRISLRIGKVQET----ATQKGPGTKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQ 615 (1053)
Q Consensus 540 ~g~~n~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~ 615 (1053)
.|++|+ .+...+.+.|++|+. .... ......++++|||+|++|+..+..|....++
T Consensus 98 tG~~~a---i~~d~~~lt~~rT~a~~~~a~~~-la~~~~~~v~IiGaG~~a~~~~~al~~~~~~---------------- 157 (330)
T PRK08291 98 TGLVEA---LLLDNGYLTDVRTAAAGAVAARH-LAREDASRAAVIGAGEQARLQLEALTLVRPI---------------- 157 (330)
T ss_pred CCceEE---EEcCCchHHHHHHHHHHHHHHHH-hCCCCCCEEEEECCCHHHHHHHHHHHhcCCC----------------
Confidence 566664 223445677777744 1111 1123457899999999999999998753322
Q ss_pred CccEEEEEECCHHHHHHHHhcCC---CceEEEecCCCHHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeecc
Q 001559 616 NDIRVLVASLYLKDAEEVIEGIP---NAEAVQLDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYI 692 (1053)
Q Consensus 616 ~~~~v~v~~r~~~~a~~l~~~~~---~~~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~ 692 (1053)
.+|.|++|+.++++++++.+. ++++... +++.+++.++|+||++||... +.+-...++.|+|+..+...
T Consensus 158 --~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~-----~d~~~al~~aDiVi~aT~s~~-p~i~~~~l~~g~~v~~vg~d 229 (330)
T PRK08291 158 --REVRVWARDAAKAEAYAADLRAELGIPVTVA-----RDVHEAVAGADIIVTTTPSEE-PILKAEWLHPGLHVTAMGSD 229 (330)
T ss_pred --CEEEEEcCCHHHHHHHHHHHhhccCceEEEe-----CCHHHHHccCCEEEEeeCCCC-cEecHHHcCCCceEEeeCCC
Confidence 379999999999999988653 2332211 346677889999999998642 22333458899999887655
Q ss_pred ChhHHHHHHHH
Q 001559 693 DDSMSKLDEKA 703 (1053)
Q Consensus 693 ~~~~~~L~~~A 703 (1053)
.+.+++++...
T Consensus 230 ~~~~rEld~~~ 240 (330)
T PRK08291 230 AEHKNEIAPAV 240 (330)
T ss_pred CCCcccCCHHH
Confidence 55666665443
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.95 E-value=5.6e-05 Score=90.20 Aligned_cols=191 Identities=21% Similarity=0.223 Sum_probs=122.5
Q ss_pred HHcCCcEEEEEEEeCCCC--cCccccccccC-CCCcchhhhhhcccccchhccCCccccccceeecc--eeeeeeecc--
Q 001559 491 EAAGGSFHLVKCQVGQST--EALSFSELEVG-ADDSAVLDQIIDSLTSLANASENNRDQISGINRIS--LRIGKVQET-- 563 (1053)
Q Consensus 491 ~f~~g~v~lvef~V~~~s--~~~sl~~lnvt-~p~k~~l~~~ld~~~~~a~~~g~~n~~~~~~~~~~--~~~g~~~~~-- 563 (1053)
.+.+++..+.++.|++++ .++++.+++.. .|+...++.+ .+......|.++.. +.... ...|....+
T Consensus 146 ~~~~~~~~i~e~~V~~~s~~~g~~l~~l~~~~~~~~~~vi~i-~r~~~~~~p~~~~~-----l~~gD~l~v~g~~~~l~~ 219 (453)
T PRK09496 146 EFADGRVQLVEVKVYEGSPLVGKPLSDLREHFPDIDVRVVAI-FRGGRLIIPRGDTV-----IEAGDEVYFIGAREHIRA 219 (453)
T ss_pred eecCCeEEEEEEEeCCCCccCCcCHHHhhhhcCCCceEEEEE-EECCEEEcCCCCcE-----ecCCCEEEEEeCHHHHHH
Confidence 345678999999999877 89999998864 4555555543 33333334433222 11111 122321111
Q ss_pred -cccCCCCCCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceE
Q 001559 564 -ATQKGPGTKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEA 642 (1053)
Q Consensus 564 -~~~~~~~~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~ 642 (1053)
....+.....+++|+|+|+|.+|+.+++.|.+.+ ..|+++++++++.+++.+..+++.+
T Consensus 220 ~~~~~~~~~~~~~~iiIiG~G~~g~~l~~~L~~~~--------------------~~v~vid~~~~~~~~~~~~~~~~~~ 279 (453)
T PRK09496 220 VMSEFGRLEKPVKRVMIVGGGNIGYYLAKLLEKEG--------------------YSVKLIERDPERAEELAEELPNTLV 279 (453)
T ss_pred HHHHhCccCCCCCEEEEECCCHHHHHHHHHHHhCC--------------------CeEEEEECCHHHHHHHHHHCCCCeE
Confidence 1111112345789999999999999999998876 3899999999999988887667788
Q ss_pred EEecCCCHHHHH-HhhccccEEEecCCcccc-HHHHHHHHHhCC-eEEEeeccChhHHHHHHHHHHcCCeEE
Q 001559 643 VQLDVSDHKSLC-KCISQVEIVISLLPASCH-VMVANACIEFKK-HLVTASYIDDSMSKLDEKAKGAGITIL 711 (1053)
Q Consensus 643 ~~~d~~d~~~l~-~~i~~~DvVI~~~p~~~~-~~v~~aci~~g~-~~vD~sy~~~~~~~L~~~Ak~~Gv~~l 711 (1053)
+..|.++.+.|. ..+.++|+||.+++-... ..+...|.+.+. +++-.+..+... +..+..|+..+
T Consensus 280 i~gd~~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~ii~~~~~~~~~----~~~~~~g~~~v 347 (453)
T PRK09496 280 LHGDGTDQELLEEEGIDEADAFIALTNDDEANILSSLLAKRLGAKKVIALVNRPAYV----DLVEGLGIDIA 347 (453)
T ss_pred EECCCCCHHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhCCCeEEEEECCcchH----HHHHhcCCCEE
Confidence 899999998886 557889999999885432 223333444443 344444443332 34567787655
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.95 E-value=5.5e-05 Score=84.37 Aligned_cols=114 Identities=18% Similarity=0.079 Sum_probs=71.1
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccc-cCCCccEEEEE-ECC---HHHH----HHHHhcCCCceE
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDF-EWQNDIRVLVA-SLY---LKDA----EEVIEGIPNAEA 642 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~-~~~~~~~v~v~-~r~---~~~a----~~l~~~~~~~~~ 642 (1053)
.+..+|+|+|+|++|.+++.+|++.| +. . ..+.|++ ++.+|+.-.+. +.+ ..|+ +++.+..|.+++
T Consensus 25 L~~s~VlIvG~GGLGs~va~~LA~aG-VG--~--i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V 99 (287)
T PRK08223 25 LRNSRVAIAGLGGVGGIHLLTLARLG-IG--K--FTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEI 99 (287)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHhC-CC--e--EEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEE
Confidence 56789999999999999999999998 31 1 1222222 33333332221 110 1133 333344566655
Q ss_pred EEecCC-CHHHHHHhhccccEEEecCCcc---ccHHHHHHHHHhCCeEEEee
Q 001559 643 VQLDVS-DHKSLCKCISQVEIVISLLPAS---CHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 643 ~~~d~~-d~~~l~~~i~~~DvVI~~~p~~---~~~~v~~aci~~g~~~vD~s 690 (1053)
...+.. +.+.+.++++++|+||+++... ....+.++|.+.++.+|..+
T Consensus 100 ~~~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~ 151 (287)
T PRK08223 100 RAFPEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAA 151 (287)
T ss_pred EEEecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEe
Confidence 444322 4556778899999999999753 23556777888888877764
|
|
| >KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00016 Score=81.29 Aligned_cols=152 Identities=23% Similarity=0.247 Sum_probs=112.1
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC--CceEEEecCCCH
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP--NAEAVQLDVSDH 650 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~--~~~~~~~d~~d~ 650 (1053)
..-|+.|+|+|.+++-.++.|...+. ++-.-|.|++|+.++|.+++..+. +.++ .
T Consensus 5 ~~ir~Gi~g~g~ia~~f~~al~~~p~----------------s~~~Ivava~~s~~~A~~fAq~~~~~~~k~-------y 61 (351)
T KOG2741|consen 5 ATIRWGIVGAGRIARDFVRALHTLPE----------------SNHQIVAVADPSLERAKEFAQRHNIPNPKA-------Y 61 (351)
T ss_pred ceeEEEEeehhHHHHHHHHHhccCcc----------------cCcEEEEEecccHHHHHHHHHhcCCCCCcc-------c
Confidence 35689999999999999999876541 111358899999999999998753 2222 2
Q ss_pred HHHHHhhcc--ccEEEecCCccccHHHHHHHHHhCCeEEEee---ccChhHHHHHHHHHHcCCeEEecCC--CChhHHHH
Q 001559 651 KSLCKCISQ--VEIVISLLPASCHVMVANACIEFKKHLVTAS---YIDDSMSKLDEKAKGAGITILGEMG--LDPGIDHM 723 (1053)
Q Consensus 651 ~~l~~~i~~--~DvVI~~~p~~~~~~v~~aci~~g~~~vD~s---y~~~~~~~L~~~Ak~~Gv~~l~g~G--~dPGi~~m 723 (1053)
.+.++++++ +|+|+-.+|...|..++..|++.|||++.-- -+.++..++.++|+++|+.++.|+- +.|-..
T Consensus 62 ~syEeLakd~~vDvVyi~~~~~qH~evv~l~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg~~~R~~P~~~-- 139 (351)
T KOG2741|consen 62 GSYEELAKDPEVDVVYISTPNPQHYEVVMLALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEGLWWRFFPRYA-- 139 (351)
T ss_pred cCHHHHhcCCCcCEEEeCCCCccHHHHHHHHHHcCCcEEecccccCCHHHHHHHHHHHHHcCcEEEeeeeeecCcHHH--
Confidence 456677765 7999999999999999999999999987753 3457788999999999999998864 455332
Q ss_pred HHHHHHHHhhhccCceEEEEeeccCCCCC
Q 001559 724 MAMKMINHAHVRKGKIKSFTSYCGGLPSP 752 (1053)
Q Consensus 724 la~~~i~~~~~~~~~v~sf~~~~Gg~p~p 752 (1053)
.++.++. ....|.+.+..+ +.+.|.+
T Consensus 140 ~lke~l~--~~~~Gdvk~v~~-~~~f~~~ 165 (351)
T KOG2741|consen 140 KLKELLS--SGVLGDVKSVEV-EFGFPFP 165 (351)
T ss_pred HHHHHHh--ccccccceEEEE-ecCCCcc
Confidence 2222232 234677888888 6555543
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=97.94 E-value=8.2e-05 Score=84.18 Aligned_cols=119 Identities=18% Similarity=0.191 Sum_probs=89.0
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
|+|.|||+|.+|.+++..|++.+ .+|.++||+.++++++.+.. +. ...+.+++.
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g--------------------~~V~~~dr~~~~~~~l~~~g--~~----~~~s~~~~~ 54 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRG--------------------HDCVGYDHDQDAVKAMKEDR--TT----GVANLRELS 54 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHcC--Cc----ccCCHHHHH
Confidence 47999999999999999999887 37899999999998887642 11 123456666
Q ss_pred HhhccccEEEecCCccccHHHHHH---HHHhCCeEEEeecc-ChhHHHHHHHHHHcCCeEEecCCCChhH
Q 001559 655 KCISQVEIVISLLPASCHVMVANA---CIEFKKHLVTASYI-DDSMSKLDEKAKGAGITILGEMGLDPGI 720 (1053)
Q Consensus 655 ~~i~~~DvVI~~~p~~~~~~v~~a---ci~~g~~~vD~sy~-~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi 720 (1053)
+.+.++|+|+.++|......+.+. .++.|..++|++-. +..+.++.+.+++.|+.++. +++.-|.
T Consensus 55 ~~~~~~dvIi~~vp~~~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vd-a~vsGg~ 123 (298)
T TIGR00872 55 QRLSAPRVVWVMVPHGIVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLD-CGTSGGV 123 (298)
T ss_pred hhcCCCCEEEEEcCchHHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEe-cCCCCCH
Confidence 667789999999998744444433 35678889999754 45677777888899988765 6654443
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=5.2e-05 Score=83.48 Aligned_cols=113 Identities=20% Similarity=0.218 Sum_probs=88.6
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
+...++|..||.|.+|+.++..|.+.| ..|+|+||+.++++++.+.-.+ + .
T Consensus 32 ~~s~~~iGFIGLG~MG~~M~~nLik~G--------------------~kVtV~dr~~~k~~~f~~~Ga~--v-------~ 82 (327)
T KOG0409|consen 32 TPSKTRIGFIGLGNMGSAMVSNLIKAG--------------------YKVTVYDRTKDKCKEFQEAGAR--V-------A 82 (327)
T ss_pred CcccceeeEEeeccchHHHHHHHHHcC--------------------CEEEEEeCcHHHHHHHHHhchh--h-------h
Confidence 346789999999999999999999998 3899999999999999876322 1 1
Q ss_pred HHHHHhhccccEEEecCCccccHH-HH------HHHHHhCCeE-EEeeccChhH-HHHHHHHHHcCCeEEe
Q 001559 651 KSLCKCISQVEIVISLLPASCHVM-VA------NACIEFKKHL-VTASYIDDSM-SKLDEKAKGAGITILG 712 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~~~-v~------~aci~~g~~~-vD~sy~~~~~-~~L~~~Ak~~Gv~~l~ 712 (1053)
++-.+..+++|+||.++|.+.+.. +. ...++.|..+ ||+|.++|.+ +++.++++..|+.++.
T Consensus 83 ~sPaeVae~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vD 153 (327)
T KOG0409|consen 83 NSPAEVAEDSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVD 153 (327)
T ss_pred CCHHHHHhhcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEe
Confidence 334567788999999999876532 21 2245577776 8999887765 6898899999988886
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=7.3e-05 Score=85.03 Aligned_cols=72 Identities=26% Similarity=0.220 Sum_probs=61.6
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
|+|+|+| +|++|+.+++.|.+.| .+|.+..|+.+++..+.. .+++.+.+|++|.+++
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g--------------------~~V~~l~R~~~~~~~l~~--~~v~~v~~Dl~d~~~l 58 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEG--------------------YQVRCLVRNLRKASFLKE--WGAELVYGDLSLPETL 58 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC--------------------CeEEEEEcChHHhhhHhh--cCCEEEECCCCCHHHH
Confidence 5799999 6999999999999887 379999999776654432 3588999999999999
Q ss_pred HHhhccccEEEecCC
Q 001559 654 CKCISQVEIVISLLP 668 (1053)
Q Consensus 654 ~~~i~~~DvVI~~~p 668 (1053)
.++++++|+||++++
T Consensus 59 ~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 59 PPSFKGVTAIIDAST 73 (317)
T ss_pred HHHHCCCCEEEECCC
Confidence 999999999999875
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=9.4e-05 Score=81.21 Aligned_cols=127 Identities=17% Similarity=0.178 Sum_probs=95.6
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCcc-EEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDI-RVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~-~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
.+||.|||+|.+|+.+++.|.+.... .. -+.|.+|+.++++++.... .+ ..+
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~-----------------~~~l~~V~~~~~~~~~~~~~~~---~~-------~~~ 54 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQ-----------------PCQLAALTRNAADLPPALAGRV---AL-------LDG 54 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCC-----------------ceEEEEEecCCHHHHHHhhccC---cc-------cCC
Confidence 36899999999999999998764311 12 3566888888888876642 21 133
Q ss_pred HHHh-hccccEEEecCCccccHHHHHHHHHhCCeEEEeec---cChhH-HHHHHHHHHcCCeEEecCCCChhHHHHHHHH
Q 001559 653 LCKC-ISQVEIVISLLPASCHVMVANACIEFKKHLVTASY---IDDSM-SKLDEKAKGAGITILGEMGLDPGIDHMMAMK 727 (1053)
Q Consensus 653 l~~~-i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy---~~~~~-~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla~~ 727 (1053)
+.++ ..+.|+||.|++...-......++++|++++-+|. -+++. ..|.+.|++.|..++.-.|---|+|.+-++.
T Consensus 55 l~~ll~~~~DlVVE~A~~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGAigGlD~l~aa~ 134 (267)
T PRK13301 55 LPGLLAWRPDLVVEAAGQQAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAIAGLDYLQAVA 134 (267)
T ss_pred HHHHhhcCCCEEEECCCHHHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChHHHhHHHHHHhh
Confidence 5564 46799999999987667778899999999999984 23333 4687889999999988888777899887654
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=6.2e-05 Score=84.89 Aligned_cols=111 Identities=26% Similarity=0.312 Sum_probs=82.6
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
+++|.|||+|.+|..++..|++.+ .+|.++||+.++++++.+. ++.. ..++
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g--------------------~~v~~~d~~~~~~~~~~~~--g~~~-------~~~~ 52 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAG--------------------YSLVVYDRNPEAVAEVIAA--GAET-------ASTA 52 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCC--------------------CeEEEEcCCHHHHHHHHHC--CCee-------cCCH
Confidence 368999999999999999999876 3789999999988877653 1211 1234
Q ss_pred HHhhccccEEEecCCccccHH-HH------HHHHHhCCeEEEeeccChh-HHHHHHHHHHcCCeEEec
Q 001559 654 CKCISQVEIVISLLPASCHVM-VA------NACIEFKKHLVTASYIDDS-MSKLDEKAKGAGITILGE 713 (1053)
Q Consensus 654 ~~~i~~~DvVI~~~p~~~~~~-v~------~aci~~g~~~vD~sy~~~~-~~~L~~~Ak~~Gv~~l~g 713 (1053)
.++++++|+||.|+|...+.. +. ..++..|+.++|++...+. .+++.+.+++.|+.++..
T Consensus 53 ~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~ 120 (296)
T PRK11559 53 KAVAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDA 120 (296)
T ss_pred HHHHhcCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEc
Confidence 566789999999999765422 21 2345778999999987664 567877888888877653
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=97.88 E-value=8.1e-05 Score=89.25 Aligned_cols=125 Identities=18% Similarity=0.219 Sum_probs=91.0
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC--CceEEEecCCCH
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP--NAEAVQLDVSDH 650 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~--~~~~~~~d~~d~ 650 (1053)
...+|.+||.|.||+++|..|++.| .+|.|+||+.++++++.+... ++..+ .-..+.
T Consensus 5 ~~~~IG~IGLG~MG~~mA~nL~~~G--------------------~~V~V~NRt~~k~~~l~~~~~~~Ga~~~-~~a~s~ 63 (493)
T PLN02350 5 ALSRIGLAGLAVMGQNLALNIAEKG--------------------FPISVYNRTTSKVDETVERAKKEGNLPL-YGFKDP 63 (493)
T ss_pred CCCCEEEEeeHHHHHHHHHHHHhCC--------------------CeEEEECCCHHHHHHHHHhhhhcCCccc-ccCCCH
Confidence 3567999999999999999999988 389999999999999886311 11111 012245
Q ss_pred HHHHHhhccccEEEecCCccccH-HHH---HHHHHhCCeEEEeecc-ChhHHHHHHHHHHcCCeEEecCCCChh
Q 001559 651 KSLCKCISQVEIVISLLPASCHV-MVA---NACIEFKKHLVTASYI-DDSMSKLDEKAKGAGITILGEMGLDPG 719 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~~-~v~---~aci~~g~~~vD~sy~-~~~~~~L~~~Ak~~Gv~~l~g~G~dPG 719 (1053)
+++.+.++++|+||.|+|..-.. .+. ...++.|..+||++-. +..+..+.++++++|+.++. +++.-|
T Consensus 64 ~e~v~~l~~~dvIi~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fld-apVSGG 136 (493)
T PLN02350 64 EDFVLSIQKPRSVIILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLG-MGVSGG 136 (493)
T ss_pred HHHHhcCCCCCEEEEECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEe-CCCcCC
Confidence 55555556699999999976542 222 3346789999999875 46778888899999998664 665433
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=97.87 E-value=3.9e-05 Score=87.93 Aligned_cols=127 Identities=14% Similarity=0.144 Sum_probs=87.0
Q ss_pred ecceeeeeeecc----cccCCCCCCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH
Q 001559 552 RISLRIGKVQET----ATQKGPGTKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL 627 (1053)
Q Consensus 552 ~~~~~~g~~~~~----~~~~~~~~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~ 627 (1053)
..+.+.|++|+. .... ......++++|||+|.+|+..++.|....++ .+|.|++|+.
T Consensus 104 d~~~lT~~RTaa~~~laa~~-la~~~~~~v~iiGaG~qA~~~~~al~~~~~i------------------~~v~V~~R~~ 164 (326)
T TIGR02992 104 DNGYLTDVRTAAAGAVAARH-LAREDSSVVAIFGAGMQARLQLEALTLVRDI------------------RSARIWARDS 164 (326)
T ss_pred CCchHHHHHHHHHHHHHHHH-hCCCCCcEEEEECCCHHHHHHHHHHHHhCCc------------------cEEEEECCCH
Confidence 344566666643 1111 1123457899999999999999999753323 3799999999
Q ss_pred HHHHHHHhcCC---CceEEEecCCCHHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeeccChhHHHHHHHH
Q 001559 628 KDAEEVIEGIP---NAEAVQLDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKA 703 (1053)
Q Consensus 628 ~~a~~l~~~~~---~~~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~~~~~~L~~~A 703 (1053)
++++++++.+. ++++.. .+++.+.++++|+||+|||... +.+-...++.|+|+..+....+.+++++...
T Consensus 165 ~~a~~~a~~~~~~~g~~v~~-----~~~~~~av~~aDiVvtaT~s~~-p~i~~~~l~~g~~i~~vg~~~p~~rEld~~~ 237 (326)
T TIGR02992 165 AKAEALALQLSSLLGIDVTA-----ATDPRAAMSGADIIVTTTPSET-PILHAEWLEPGQHVTAMGSDAEHKNEIDPAV 237 (326)
T ss_pred HHHHHHHHHHHhhcCceEEE-----eCCHHHHhccCCEEEEecCCCC-cEecHHHcCCCcEEEeeCCCCCCceecCHHH
Confidence 99999987753 233322 2446777889999999998643 3333457899999998876556666665444
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00012 Score=84.34 Aligned_cols=137 Identities=26% Similarity=0.258 Sum_probs=84.8
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEEC----------CHHHHHHHHhcCCCceEEE
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASL----------YLKDAEEVIEGIPNAEAVQ 644 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r----------~~~~a~~l~~~~~~~~~~~ 644 (1053)
.+|.|+|+|.+|+.+++.|.+... .+..++..+++ -+.|+|+ +.+++.+..+.........
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~----~~~~~~g~~~~-----vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~ 73 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKRE----YLKKRYGLDLK-----VVAIADSSGSAIDPDGLDLELALKVKEETGKLADYP 73 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHH----HHHHHcCCCEE-----EEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCc
Confidence 589999999999999999876520 00000011111 3667775 4555555544433211100
Q ss_pred ecCCCHHHHHHhhc--cccEEEecCCcccc-----HHHHHHHHHhCCeEEEee--ccChhHHHHHHHHHHcCCeEEecC-
Q 001559 645 LDVSDHKSLCKCIS--QVEIVISLLPASCH-----VMVANACIEFKKHLVTAS--YIDDSMSKLDEKAKGAGITILGEM- 714 (1053)
Q Consensus 645 ~d~~d~~~l~~~i~--~~DvVI~~~p~~~~-----~~v~~aci~~g~~~vD~s--y~~~~~~~L~~~Ak~~Gv~~l~g~- 714 (1053)
+.....++.+++. +.|+||.|+|...| ...+..|+++|+|+|..+ .......+|.+.|+++|+.+..+.
T Consensus 74 -~~~~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ea~ 152 (341)
T PRK06270 74 -EGGGEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRYEAT 152 (341)
T ss_pred -cccccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEEeee
Confidence 0000123445553 58999999997665 567789999999999974 333345688899999999888654
Q ss_pred --CCChhHH
Q 001559 715 --GLDPGID 721 (1053)
Q Consensus 715 --G~dPGi~ 721 (1053)
|..|-+.
T Consensus 153 v~~glPii~ 161 (341)
T PRK06270 153 VGGAMPIIN 161 (341)
T ss_pred eeechhHHH
Confidence 3445443
|
|
| >TIGR00300 conserved hypothetical protein TIGR00300 | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.1e-05 Score=91.14 Aligned_cols=70 Identities=30% Similarity=0.571 Sum_probs=65.9
Q ss_pred ccceeeecccccccccchhhhhHHHHHcCCcEEEEEEEeCCCCcCccccccccCCCCcchhhhhhccccc
Q 001559 466 KHNLLVSLSGHLFDQFLINEALDIIEAAGGSFHLVKCQVGQSTEALSFSELEVGADDSAVLDQIIDSLTS 535 (1053)
Q Consensus 466 ~~~~~~~~~gHl~d~~~~n~Aldv~~f~~g~v~lvef~V~~~s~~~sl~~lnvt~p~k~~l~~~ld~~~~ 535 (1053)
++++.|+++||++|++++|++||....++|+|++.+|+|++.....|.+.+.|+.|+.+.|..+|.++..
T Consensus 1 ~~~r~iel~GHiiDs~il~~~lD~i~d~gG~f~v~~f~vG~~k~d~S~a~~~V~a~~~~~l~~Il~~l~~ 70 (407)
T TIGR00300 1 MESREIELEGHLIDSLILPKALDIILDMGGDFRVLEFNIGKRKNDPSYARILVSARDHQHLEEILTELID 70 (407)
T ss_pred CcceEEEEeeeeechhhHHHHHHHHHhcCCceEEEEEecCCccCCCccEEEEEecCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999999999999887743
|
All members of the family come from genome projects. A partial length search brings in two plant lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzymes hitting the N-terminal region of the family. |
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=8.7e-05 Score=83.90 Aligned_cols=109 Identities=19% Similarity=0.266 Sum_probs=82.6
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
++|.|||+|.+|.+++..|++.| .+|.++||+.++++++.+.- +. ...+..
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G--------------------~~V~v~d~~~~~~~~~~~~g--~~-------~~~s~~ 52 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQG--------------------HQLQVFDVNPQAVDALVDKG--AT-------PAASPA 52 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCC--------------------CeEEEEcCCHHHHHHHHHcC--Cc-------ccCCHH
Confidence 57999999999999999999887 37999999999998877641 11 112345
Q ss_pred HhhccccEEEecCCcccc-HHHH------HHHHHhCCeEEEeeccCh-hHHHHHHHHHHcCCeEEe
Q 001559 655 KCISQVEIVISLLPASCH-VMVA------NACIEFKKHLVTASYIDD-SMSKLDEKAKGAGITILG 712 (1053)
Q Consensus 655 ~~i~~~DvVI~~~p~~~~-~~v~------~aci~~g~~~vD~sy~~~-~~~~L~~~Ak~~Gv~~l~ 712 (1053)
++++++|+||.|+|.... ..+. ...+..|+.++|++-.++ .++++.+.++++|+.++.
T Consensus 53 ~~~~~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ld 118 (296)
T PRK15461 53 QAAAGAEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMD 118 (296)
T ss_pred HHHhcCCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 677899999999998642 2221 123567888999987654 567888889999988774
|
|
| >COG1915 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.4e-05 Score=86.79 Aligned_cols=69 Identities=33% Similarity=0.618 Sum_probs=63.6
Q ss_pred cceeeecccccccccchhhhhHHHHHcCCcEEEEEEEeCCCCcCccccccccCCCCcchhhhhhccccc
Q 001559 467 HNLLVSLSGHLFDQFLINEALDIIEAAGGSFHLVKCQVGQSTEALSFSELEVGADDSAVLDQIIDSLTS 535 (1053)
Q Consensus 467 ~~~~~~~~gHl~d~~~~n~Aldv~~f~~g~v~lvef~V~~~s~~~sl~~lnvt~p~k~~l~~~ld~~~~ 535 (1053)
.++.|+++||++|+.++|+|||+....+|+|++++|++++...+.|.+.+-|..|+.+.+-++++++-+
T Consensus 2 ~~Reiel~GHliDs~il~ralD~I~d~gG~f~vLef~~Gk~k~dpS~A~i~V~~~~~~~leeIl~eL~~ 70 (415)
T COG1915 2 ESREIELEGHLIDSLILNRALDIIVDMGGDFQVLEFNLGKRKTDPSYAEILVSAPDHEHLEEILSELID 70 (415)
T ss_pred CceEEEeeceehhhhhhHHHHHHHhhcCCceEEEEEecccccCCCCceEEEEeCCCHHHHHHHHHHHHH
Confidence 457799999999999999999999999999999999999999999999999999999988888877644
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.82 E-value=3.1e-05 Score=87.84 Aligned_cols=109 Identities=17% Similarity=0.110 Sum_probs=80.5
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCC--ceEEEecCCC
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPN--AEAVQLDVSD 649 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~--~~~~~~d~~d 649 (1053)
...++++|||+|.+|+..++.+....++ .+|.|++|+.++++++++.+.. +.+. +
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~------------------~~v~v~~r~~~~a~~~a~~~~~~~~~~~---~-- 179 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPV------------------RRVWVRGRTAASAAAFCAHARALGPTAE---P-- 179 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCC------------------CEEEEEcCCHHHHHHHHHHHHhcCCeeE---E--
Confidence 3467899999999999999999753222 3799999999999999987642 1221 1
Q ss_pred HHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeeccChhHHHHHHHHHHc
Q 001559 650 HKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGA 706 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~~~~~~L~~~Ak~~ 706 (1053)
+++.++++++|+||+|||... ++....++.|+|+.-+....+.+++++.+.-.+
T Consensus 180 -~~~~~av~~aDiVitaT~s~~--Pl~~~~~~~g~hi~~iGs~~p~~~El~~~~~~~ 233 (304)
T PRK07340 180 -LDGEAIPEAVDLVVTATTSRT--PVYPEAARAGRLVVAVGAFTPDMAELAPRTVRG 233 (304)
T ss_pred -CCHHHHhhcCCEEEEccCCCC--ceeCccCCCCCEEEecCCCCCCcccCCHHHHhh
Confidence 345667789999999998653 333445799999998876666777766554443
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00024 Score=80.54 Aligned_cols=118 Identities=17% Similarity=0.165 Sum_probs=84.8
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
++|.|||+|.+|.++++.|++.+ .+|.++||++++++++.+. ++.. ..+.+++.
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g--------------------~~v~v~dr~~~~~~~~~~~--g~~~----~~~~~e~~ 54 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGG--------------------HEVVGYDRNPEAVEALAEE--GATG----ADSLEELV 54 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCC--------------------CeEEEEECCHHHHHHHHHC--CCee----cCCHHHHH
Confidence 47999999999999999999887 3799999999999887653 2221 12344443
Q ss_pred HhhccccEEEecCCcc-ccHHHHH---HHHHhCCeEEEeecc-ChhHHHHHHHHHHcCCeEEecCCCChh
Q 001559 655 KCISQVEIVISLLPAS-CHVMVAN---ACIEFKKHLVTASYI-DDSMSKLDEKAKGAGITILGEMGLDPG 719 (1053)
Q Consensus 655 ~~i~~~DvVI~~~p~~-~~~~v~~---aci~~g~~~vD~sy~-~~~~~~L~~~Ak~~Gv~~l~g~G~dPG 719 (1053)
+.+.++|+||.++|.. ....+.. ..++.|..+||++-. +..+..+.+.++++|+.++. +.+.-|
T Consensus 55 ~~~~~~dvvi~~v~~~~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~d-apvsG~ 123 (301)
T PRK09599 55 AKLPAPRVVWLMVPAGEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVD-VGTSGG 123 (301)
T ss_pred hhcCCCCEEEEEecCCcHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEe-CCCCcC
Confidence 3333579999999976 2233332 345678889999754 44667788899999999885 665433
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00012 Score=83.46 Aligned_cols=95 Identities=24% Similarity=0.305 Sum_probs=71.5
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
...++|+|+|+|.+|+.++.+|...+. .+|.+++|+.++++++++.++. .++ +.+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~-------------------~~V~v~~r~~~ra~~la~~~g~-~~~-----~~~ 230 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGV-------------------AEITIANRTYERAEELAKELGG-NAV-----PLD 230 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCC-------------------CEEEEEeCCHHHHHHHHHHcCC-eEE-----eHH
Confidence 457899999999999999999987652 3799999999999999988763 222 335
Q ss_pred HHHHhhccccEEEecCCccccHHHHHHHHH----hCCeEEEeec
Q 001559 652 SLCKCISQVEIVISLLPASCHVMVANACIE----FKKHLVTASY 691 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~~~~~~v~~aci~----~g~~~vD~sy 691 (1053)
++.+.+.++|+||+|+|......+....++ .+..++|++-
T Consensus 231 ~~~~~l~~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 231 ELLELLNEADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred HHHHHHhcCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCC
Confidence 677888899999999986554333333332 2457899983
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00017 Score=71.84 Aligned_cols=99 Identities=24% Similarity=0.353 Sum_probs=69.1
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC-------------------HHHHH--
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY-------------------LKDAE-- 631 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~-------------------~~~a~-- 631 (1053)
|.++|+|+|+|++|..++..|++.| + -+++++|.+ ..|++
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~G-v------------------~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~ 61 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSG-V------------------GKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAA 61 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHT-T------------------SEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHH
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhC-C------------------CceeecCCcceeecccccccccccccchhHHHHHH
Confidence 3579999999999999999999988 3 267777764 11333
Q ss_pred --HHHhcCCCceEEEe--cCCCHHHHHHhhccccEEEecCCcc-ccHHHHHHHHHhCCeEEEeec
Q 001559 632 --EVIEGIPNAEAVQL--DVSDHKSLCKCISQVEIVISLLPAS-CHVMVANACIEFKKHLVTASY 691 (1053)
Q Consensus 632 --~l~~~~~~~~~~~~--d~~d~~~l~~~i~~~DvVI~~~p~~-~~~~v~~aci~~g~~~vD~sy 691 (1053)
++.+..|.+++... ++ +.+.+.++++++|+||+|+... ....+.+.|.+.++++++...
T Consensus 62 ~~~l~~~np~~~v~~~~~~~-~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~ 125 (135)
T PF00899_consen 62 KERLQEINPDVEVEAIPEKI-DEENIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAGV 125 (135)
T ss_dssp HHHHHHHSTTSEEEEEESHC-SHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred HHHHHHhcCceeeeeeeccc-ccccccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 33344566554433 34 4567788889999999998543 334567788899999888764
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00018 Score=76.78 Aligned_cols=100 Identities=25% Similarity=0.310 Sum_probs=70.2
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC-------------------HHHHHH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY-------------------LKDAEE 632 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~-------------------~~~a~~ 632 (1053)
.+..+|+|+|+|++|..+++.|+..| + -+++++|.+ ..|++.
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~G-v------------------~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~ 79 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAG-V------------------GTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEV 79 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcC-C------------------CeEEEecCCEEcccchhhhhccChhhCCChHHHH
Confidence 46789999999999999999999998 3 267777765 234443
Q ss_pred HH----hcCCCceEEEecCC-CHHHHHHhhccccEEEecCCccc-cHHHHHHHHHhCCeEEEee
Q 001559 633 VI----EGIPNAEAVQLDVS-DHKSLCKCISQVEIVISLLPASC-HVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 633 l~----~~~~~~~~~~~d~~-d~~~l~~~i~~~DvVI~~~p~~~-~~~v~~aci~~g~~~vD~s 690 (1053)
++ +..|.+++...+.. +.+.+.+.++++|+||+|+.... ...+.+.|.+.++.+++..
T Consensus 80 ~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~ 143 (202)
T TIGR02356 80 AAQRLRELNSDIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDACVALGTPLISAA 143 (202)
T ss_pred HHHHHHHhCCCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 33 33455554433322 44667788999999999986432 2446677888888887765
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00011 Score=82.70 Aligned_cols=108 Identities=25% Similarity=0.294 Sum_probs=80.6
Q ss_pred eEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHHH
Q 001559 576 SVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLCK 655 (1053)
Q Consensus 576 ~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~~ 655 (1053)
+|.|||+|.+|.+++..|++.| .+|.+++|+.++++++.+.- .. ...+..+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G--------------------~~V~~~dr~~~~~~~~~~~g--~~-------~~~~~~~ 51 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAG--------------------YQLHVTTIGPEVADELLAAG--AV-------TAETARQ 51 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCC--------------------CeEEEEcCCHHHHHHHHHCC--Cc-------ccCCHHH
Confidence 4899999999999999999887 38999999999988876541 11 1123557
Q ss_pred hhccccEEEecCCccccH-HHH------HHHHHhCCeEEEeeccCh-hHHHHHHHHHHcCCeEEe
Q 001559 656 CISQVEIVISLLPASCHV-MVA------NACIEFKKHLVTASYIDD-SMSKLDEKAKGAGITILG 712 (1053)
Q Consensus 656 ~i~~~DvVI~~~p~~~~~-~v~------~aci~~g~~~vD~sy~~~-~~~~L~~~Ak~~Gv~~l~ 712 (1053)
.++++|+||.|+|..... .+. ...+..|+.++|++...+ .++++.+.+++.|+.++.
T Consensus 52 ~~~~aDivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~ 116 (291)
T TIGR01505 52 VTEQADVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLD 116 (291)
T ss_pred HHhcCCEEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEe
Confidence 788999999999975432 221 122356888999987655 456788888888988877
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00021 Score=80.85 Aligned_cols=112 Identities=15% Similarity=0.111 Sum_probs=80.1
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
++|.+||+|.+|.++++.|++.+ .+|.++||+.++++++.+. ++.. ..+.+++.
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g--------------------~~v~v~dr~~~~~~~~~~~--g~~~----~~s~~~~~ 54 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDG--------------------HEVVGYDVNQEAVDVAGKL--GITA----RHSLEELV 54 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCC--------------------CEEEEEECCHHHHHHHHHC--CCee----cCCHHHHH
Confidence 47999999999999999999886 3789999999998887543 1211 11333333
Q ss_pred HhhccccEEEecCCcc-ccHHHHHH---HHHhCCeEEEeecc-ChhHHHHHHHHHHcCCeEEe
Q 001559 655 KCISQVEIVISLLPAS-CHVMVANA---CIEFKKHLVTASYI-DDSMSKLDEKAKGAGITILG 712 (1053)
Q Consensus 655 ~~i~~~DvVI~~~p~~-~~~~v~~a---ci~~g~~~vD~sy~-~~~~~~L~~~Ak~~Gv~~l~ 712 (1053)
+-..++|+||.|+|.. ....+... .++.|+.++|+|-. +....++.+.+++.|+.++.
T Consensus 55 ~~~~~advVi~~vp~~~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vd 117 (299)
T PRK12490 55 SKLEAPRTIWVMVPAGEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVD 117 (299)
T ss_pred HhCCCCCEEEEEecCchHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEe
Confidence 2223479999999986 33344333 34678899999865 45677888889999987754
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.77 E-value=4.8e-05 Score=87.72 Aligned_cols=95 Identities=18% Similarity=0.217 Sum_probs=66.2
Q ss_pred CCeEEEEcC-chhhHHHHHHHHhCCCCCcccccccccccccCCCccEE-EEEECCHHHHHHHHhcCCCceEE-EecCCCH
Q 001559 574 TSSVLIIGA-GRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRV-LVASLYLKDAEEVIEGIPNAEAV-QLDVSDH 650 (1053)
Q Consensus 574 ~~~VlIiGa-G~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v-~v~~r~~~~a~~l~~~~~~~~~~-~~d~~d~ 650 (1053)
++||+|+|+ |.+|+.+++.|.+++. .++ .+++| .+..+.+.+.++++... ..++.+.
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~-------------------~elv~v~~~-~~~g~~l~~~~~~~~~~~~~~~~~~ 61 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPE-------------------VEIVAVTSR-SSAGKPLSDVHPHLRGLVDLVLEPL 61 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCC-------------------ceEEEEECc-cccCcchHHhCcccccccCceeecC
Confidence 579999995 9999999999998753 354 44553 33334444444432211 1122222
Q ss_pred HHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEee
Q 001559 651 KSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~s 690 (1053)
+.. ...++|+|+.|+|...|..++.+|+++|+++||.|
T Consensus 62 ~~~--~~~~vD~Vf~alP~~~~~~~v~~a~~aG~~VID~S 99 (343)
T PRK00436 62 DPE--ILAGADVVFLALPHGVSMDLAPQLLEAGVKVIDLS 99 (343)
T ss_pred CHH--HhcCCCEEEECCCcHHHHHHHHHHHhCCCEEEECC
Confidence 222 34679999999999999999999999999999998
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00021 Score=78.43 Aligned_cols=114 Identities=20% Similarity=0.211 Sum_probs=70.7
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccc-cCCCccEEEE-EE---CCHHHHH----HHHhcCCCceE
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDF-EWQNDIRVLV-AS---LYLKDAE----EVIEGIPNAEA 642 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~-~~~~~~~v~v-~~---r~~~~a~----~l~~~~~~~~~ 642 (1053)
.+..+|+|+|+|++|..++.+|++.| +. .+ .+.|++ ++.+|+.-.+ .. .-..|++ ++.+..|.+++
T Consensus 22 L~~~~VlvvG~GglGs~va~~La~~G-vg--~i--~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i 96 (240)
T TIGR02355 22 LKASRVLIVGLGGLGCAASQYLAAAG-VG--NL--TLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAI 96 (240)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcC-CC--EE--EEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEE
Confidence 45789999999999999999999988 31 11 111211 3333332111 11 1112333 33444566665
Q ss_pred EEecCC-CHHHHHHhhccccEEEecCCccc-cHHHHHHHHHhCCeEEEee
Q 001559 643 VQLDVS-DHKSLCKCISQVEIVISLLPASC-HVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 643 ~~~d~~-d~~~l~~~i~~~DvVI~~~p~~~-~~~v~~aci~~g~~~vD~s 690 (1053)
...+.. +.+.+.++++++|+||+|+.... ...+.+.|.+.++++|..+
T Consensus 97 ~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~ 146 (240)
T TIGR02355 97 NPINAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGA 146 (240)
T ss_pred EEEeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 544432 45667788999999999986533 3456778888888888765
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00041 Score=77.49 Aligned_cols=131 Identities=24% Similarity=0.275 Sum_probs=92.3
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhc--CCCceEEEe-----
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEG--IPNAEAVQL----- 645 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~--~~~~~~~~~----- 645 (1053)
+..||.+||+|.+|+-++...++.++. .-|.+.+|+...+++..+. .+..+++..
T Consensus 16 ~PiRVGlIGAG~mG~~ivtQi~~m~Gm------------------~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~ 77 (438)
T COG4091 16 KPIRVGLIGAGEMGTGIVTQIASMPGM------------------EVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASK 77 (438)
T ss_pred CceEEEEecccccchHHHHHHhhcCCc------------------eEEEEecccchHHHHHHHHhcCCcccccccchhhH
Confidence 457999999999999999999877643 2578899999988877653 222222211
Q ss_pred ----------cCCCHHHHHHhhccccEEEecCCcc-ccHHHHHHHHHhCCeEEEeeccChhH--HHHHHHHHHcCCeEEe
Q 001559 646 ----------DVSDHKSLCKCISQVEIVISLLPAS-CHVMVANACIEFKKHLVTASYIDDSM--SKLDEKAKGAGITILG 712 (1053)
Q Consensus 646 ----------d~~d~~~l~~~i~~~DvVI~~~p~~-~~~~v~~aci~~g~~~vD~sy~~~~~--~~L~~~Ak~~Gv~~l~ 712 (1053)
-++|..++.-.....|+||++|+.. ....+...++.+++|+|=+....+-| .-|.++|.++|+.+-.
T Consensus 78 ~a~Ai~aGKi~vT~D~~~i~~~~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlVMmNVEaDvtIGp~Lk~~Ad~~GviyS~ 157 (438)
T COG4091 78 MADAIEAGKIAVTDDAELIIANDLIDVIIDATGVPEVGAKIALEAILHGKHLVMMNVEADVTIGPILKQQADAAGVIYSG 157 (438)
T ss_pred HHHHHhcCcEEEecchhhhhcCCcceEEEEcCCCcchhhHhHHHHHhcCCeEEEEEeeeceeecHHHHHHHhhcCeEEec
Confidence 1222222221223479999999854 56788889999999998776533222 3577889999999999
Q ss_pred cCCCChhHH
Q 001559 713 EMGLDPGID 721 (1053)
Q Consensus 713 g~G~dPGi~ 721 (1053)
+.|=.|+.-
T Consensus 158 ~~GDeP~~~ 166 (438)
T COG4091 158 GAGDEPSSC 166 (438)
T ss_pred cCCCCcHHH
Confidence 999889743
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00026 Score=76.94 Aligned_cols=112 Identities=22% Similarity=0.252 Sum_probs=82.2
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
|+++|+|+|.+|+.+|+.|.+.| ..|++++++.+++++....-..+.+++.|.+|.+.|.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g--------------------~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~ 60 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG--------------------HNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLE 60 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC--------------------CceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHH
Confidence 68999999999999999999987 2799999999999885553234788999999999999
Q ss_pred Hh-hccccEEEecCCccc-cHHHHHHHHH-hCCeEEEeeccChhHHHHHHHHHHcCCe
Q 001559 655 KC-ISQVEIVISLLPASC-HVMVANACIE-FKKHLVTASYIDDSMSKLDEKAKGAGIT 709 (1053)
Q Consensus 655 ~~-i~~~DvVI~~~p~~~-~~~v~~aci~-~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~ 709 (1053)
++ +.++|+||-+++..- ..-+...+.+ .|.+.+-+-...+... +..++.|+.
T Consensus 61 ~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~~~~~---~~~~~~g~~ 115 (225)
T COG0569 61 EAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARNPEHE---KVLEKLGAD 115 (225)
T ss_pred hcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecCHHHH---HHHHHcCCc
Confidence 77 899999999998643 2233333333 6777665544333221 334556743
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=97.75 E-value=1.9e-05 Score=77.69 Aligned_cols=109 Identities=22% Similarity=0.209 Sum_probs=70.2
Q ss_pred CeEEEEcC-chhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH-H----HHHHHhcCCCceEEEecCC
Q 001559 575 SSVLIIGA-GRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK-D----AEEVIEGIPNAEAVQLDVS 648 (1053)
Q Consensus 575 ~~VlIiGa-G~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~-~----a~~l~~~~~~~~~~~~d~~ 648 (1053)
+||+|+|+ |++|+.+++.+.+..++ .-+.+++|..+ . .-+++...+ ..+.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~------------------~lv~~v~~~~~~~~g~d~g~~~~~~~------~~~~ 56 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGF------------------ELVGAVDRKPSAKVGKDVGELAGIGP------LGVP 56 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTE------------------EEEEEEETTTSTTTTSBCHHHCTSST-------SSB
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCc------------------EEEEEEecCCcccccchhhhhhCcCC------cccc
Confidence 48999998 99999999999986633 13667777751 1 111111111 1111
Q ss_pred CHHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEee--ccChhHHHHHHHHHHcC
Q 001559 649 DHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTAS--YIDDSMSKLDEKAKGAG 707 (1053)
Q Consensus 649 d~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~s--y~~~~~~~L~~~Ak~~G 707 (1053)
-.+++.+++..+|+||+.+-+......++.|+++|+++|--+ |...+...|.+.|++.+
T Consensus 57 v~~~l~~~~~~~DVvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~~~ 117 (124)
T PF01113_consen 57 VTDDLEELLEEADVVIDFTNPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEELAKKIP 117 (124)
T ss_dssp EBS-HHHHTTH-SEEEEES-HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHTTTSE
T ss_pred cchhHHHhcccCCEEEEcCChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHHhccCC
Confidence 125678888889999999955555677889999999988755 55566777876666633
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00023 Score=86.26 Aligned_cols=78 Identities=21% Similarity=0.348 Sum_probs=65.3
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC-------------
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI------------- 637 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~------------- 637 (1053)
..++.|+|+| +|++|+.+++.|++.| .+|.++.|+.++++++.+.+
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G--------------------~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~ 137 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLG--------------------FRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPV 137 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC--------------------CeEEEEeCCHHHHHHHHHHhhhhcccccccccc
Confidence 4467899999 6999999999999987 37999999999887765422
Q ss_pred CCceEEEecCCCHHHHHHhhccccEEEecCCc
Q 001559 638 PNAEAVQLDVSDHKSLCKCISQVEIVISLLPA 669 (1053)
Q Consensus 638 ~~~~~~~~d~~d~~~l~~~i~~~DvVI~~~p~ 669 (1053)
.++.++.+|++|.+++.+.+.++|+||++++.
T Consensus 138 ~~v~iV~gDLtD~esI~~aLggiDiVVn~AG~ 169 (576)
T PLN03209 138 EKLEIVECDLEKPDQIGPALGNASVVICCIGA 169 (576)
T ss_pred CceEEEEecCCCHHHHHHHhcCCCEEEEcccc
Confidence 23678899999999999999999999999865
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00025 Score=84.84 Aligned_cols=124 Identities=19% Similarity=0.219 Sum_probs=88.1
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC--CceEEEecCCCHHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP--NAEAVQLDVSDHKS 652 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~--~~~~~~~d~~d~~~ 652 (1053)
.+|.|||+|.+|.++|..|++.| .+|.+.||+.++++++.+... +..... ..+.++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G--------------------~~V~v~dr~~~~~~~l~~~~~~~g~~i~~--~~s~~e 59 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRG--------------------FKISVYNRTYEKTEEFVKKAKEGNTRVKG--YHTLEE 59 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCC--------------------CeEEEEeCCHHHHHHHHHhhhhcCCccee--cCCHHH
Confidence 57999999999999999999988 389999999999998876421 211111 123444
Q ss_pred HHHhhccccEEEecCCcccc-HHHHH---HHHHhCCeEEEeec-cChhHHHHHHHHHHcCCeEEecCCCChhHH
Q 001559 653 LCKCISQVEIVISLLPASCH-VMVAN---ACIEFKKHLVTASY-IDDSMSKLDEKAKGAGITILGEMGLDPGID 721 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~~~-~~v~~---aci~~g~~~vD~sy-~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~ 721 (1053)
+.+.++++|+||-++|+... ..+.. ..++.|..++|.+- .+.++..+.++++++|+.++. +|+.-|..
T Consensus 60 ~v~~l~~~d~Iil~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fld-apVSGG~~ 132 (470)
T PTZ00142 60 LVNSLKKPRKVILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLG-MGVSGGEE 132 (470)
T ss_pred HHhcCCCCCEEEEEeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEc-CCCCCCHH
Confidence 44444468988888776543 33332 34678899999985 356777788899999998664 77655544
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00017 Score=84.20 Aligned_cols=100 Identities=20% Similarity=0.275 Sum_probs=72.8
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC-------------------HHHHHH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY-------------------LKDAEE 632 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~-------------------~~~a~~ 632 (1053)
.+.++|+|+|+|++|+.++.+|++.| + -+++++|++ ..|++.
T Consensus 133 l~~~~VlvvG~GG~Gs~ia~~La~~G-v------------------g~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~ 193 (376)
T PRK08762 133 LLEARVLLIGAGGLGSPAALYLAAAG-V------------------GTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDS 193 (376)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcC-C------------------CeEEEEeCCEecchhhccccccchhhCCCcHHHH
Confidence 45678999999999999999999998 3 267777776 345554
Q ss_pred HHh----cCCCceEEEecCC-CHHHHHHhhccccEEEecCCcc-ccHHHHHHHHHhCCeEEEee
Q 001559 633 VIE----GIPNAEAVQLDVS-DHKSLCKCISQVEIVISLLPAS-CHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 633 l~~----~~~~~~~~~~d~~-d~~~l~~~i~~~DvVI~~~p~~-~~~~v~~aci~~g~~~vD~s 690 (1053)
+++ ..|.+++...+.. +.+.+.++++++|+||+|+... ....+.+.|.+.++++|..+
T Consensus 194 ~~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~ 257 (376)
T PRK08762 194 AAQRLAALNPDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDACVKLGKPLVYGA 257 (376)
T ss_pred HHHHHHHHCCCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 443 3465554433322 4456778889999999999653 33457788999999988875
|
|
| >TIGR03855 NAD_NadX aspartate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00024 Score=77.32 Aligned_cols=112 Identities=24% Similarity=0.236 Sum_probs=84.1
Q ss_pred EEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHHHhh-ccccEEEecCCccccHHHHHHHHHhCCeEEEeec----cC
Q 001559 619 RVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLCKCI-SQVEIVISLLPASCHVMVANACIEFKKHLVTASY----ID 693 (1053)
Q Consensus 619 ~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~~~i-~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy----~~ 693 (1053)
-+.|+|++.++++++++.+. +.. .+| +++++ .+.|+|+.|+|...|.+++..|+++|+|++.++. ..
T Consensus 4 LvaV~D~~~e~a~~~a~~~g-~~~----~~d---~~eLl~~~vDaVviatp~~~H~e~a~~aL~aGkhVl~~s~gAlad~ 75 (229)
T TIGR03855 4 IAAVYDRNPKDAKELAERCG-AKI----VSD---FDEFLPEDVDIVVEAASQEAVKEYAEKILKNGKDLLIMSVGALADR 75 (229)
T ss_pred EEEEECCCHHHHHHHHHHhC-Cce----ECC---HHHHhcCCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCcccCCH
Confidence 47889999999999998764 222 123 34444 4799999999999999999999999999999875 23
Q ss_pred hhHHHHHHHHHHcCCeEEecCCCChhHHHHHHHHHHHHhhhccCceEEEEeec
Q 001559 694 DSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMINHAHVRKGKIKSFTSYC 746 (1053)
Q Consensus 694 ~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla~~~i~~~~~~~~~v~sf~~~~ 746 (1053)
....+|.+.|++.|+.++...|.--|+|.+-+. +.+.+.++.+.+
T Consensus 76 e~~~~l~~aA~~~g~~l~i~sGai~g~d~l~a~--------~ig~~~~V~i~~ 120 (229)
T TIGR03855 76 ELRERLREVARSSGRKVYIPSGAIGGLDALKAA--------SLGRIERVVLTT 120 (229)
T ss_pred HHHHHHHHHHHhcCCEEEEChHHHHHHHHHHhc--------ccCCceEEEEEE
Confidence 556788899999999999988876666555322 224566665543
|
Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur. |
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00019 Score=85.19 Aligned_cols=126 Identities=19% Similarity=0.201 Sum_probs=82.4
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
+.+|.|+|+|.+|+.+++.|.++... ...+.+.+++ -+.|++|+.++++.. ..+... ++ .++
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~----l~~~~g~~i~-----l~~V~~~~~~~~~~~--~~~~~~-----~~--~d~ 64 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEE----IAARAGRPIE-----IKKVAVRDLEKDRGV--DLPGIL-----LT--TDP 64 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHH----HHHhcCCCEE-----EEEEEeCChhhccCC--CCcccc-----ee--CCH
Confidence 46899999999999999988665310 0000001111 367889987765421 111111 11 234
Q ss_pred HHhhc--cccEEEecCCc-cccHHHHHHHHHhCCeEEEeec--cChhHHHHHHHHHHcCCeEEecCCCC
Q 001559 654 CKCIS--QVEIVISLLPA-SCHVMVANACIEFKKHLVTASY--IDDSMSKLDEKAKGAGITILGEMGLD 717 (1053)
Q Consensus 654 ~~~i~--~~DvVI~~~p~-~~~~~v~~aci~~g~~~vD~sy--~~~~~~~L~~~Ak~~Gv~~l~g~G~d 717 (1053)
.+++. +.|+||.|++. ..|.....+|+++|+|+|+..- ......+|.+.|+++|+.+..++.+.
T Consensus 65 ~~ll~d~~iDvVve~tg~~~~~~~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~fEasV~ 133 (426)
T PRK06349 65 EELVNDPDIDIVVELMGGIEPARELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLYFEAAVA 133 (426)
T ss_pred HHHhhCCCCCEEEECCCCchHHHHHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEEEEEEee
Confidence 55554 58999999865 4567889999999999998752 23456788899999999888664333
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00038 Score=76.60 Aligned_cols=100 Identities=20% Similarity=0.287 Sum_probs=68.6
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC-------------------HHHHH-
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY-------------------LKDAE- 631 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~-------------------~~~a~- 631 (1053)
.+.++|+|+|+|++|..++.+|+..| + -+++++|.+ ..|++
T Consensus 30 L~~~~VliiG~GglGs~va~~La~~G-v------------------g~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~ 90 (245)
T PRK05690 30 LKAARVLVVGLGGLGCAASQYLAAAG-V------------------GTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVES 90 (245)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHcC-C------------------CEEEEEcCCEECcchhhhhhcCChhhCCChHHHH
Confidence 56789999999999999999999988 3 144444432 12333
Q ss_pred ---HHHhcCCCceEEEecCC-CHHHHHHhhccccEEEecCCccc-cHHHHHHHHHhCCeEEEee
Q 001559 632 ---EVIEGIPNAEAVQLDVS-DHKSLCKCISQVEIVISLLPASC-HVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 632 ---~l~~~~~~~~~~~~d~~-d~~~l~~~i~~~DvVI~~~p~~~-~~~v~~aci~~g~~~vD~s 690 (1053)
++.+..|.+++...+.. +.+.+.++++++|+||+|+.... ...+.+.|.+.++.+|..+
T Consensus 91 a~~~l~~lnp~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~ 154 (245)
T PRK05690 91 ARAALARINPHIAIETINARLDDDELAALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVSGA 154 (245)
T ss_pred HHHHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEEEee
Confidence 33444566555444322 45567788899999999996432 2446677888888888764
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00011 Score=71.89 Aligned_cols=94 Identities=23% Similarity=0.249 Sum_probs=66.8
Q ss_pred eEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC---CceEEEecCCCHH
Q 001559 576 SVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP---NAEAVQLDVSDHK 651 (1053)
Q Consensus 576 ~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~---~~~~~~~d~~d~~ 651 (1053)
||.|+| +|++|+.+++.|.+++.+ ..+.+++++.+.-+.+...++ ......++-.+.+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~------------------e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 62 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDF------------------ELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPE 62 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTE------------------EEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCc------------------cEEEeeeeccccCCeeehhccccccccceeEeecchh
Confidence 699999 899999999999997632 146667776634444444443 2222222112332
Q ss_pred HHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeec
Q 001559 652 SLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASY 691 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy 691 (1053)
.++++|+|+.|+|...+...+..+++.|..+||+|.
T Consensus 63 ----~~~~~Dvvf~a~~~~~~~~~~~~~~~~g~~ViD~s~ 98 (121)
T PF01118_consen 63 ----ELSDVDVVFLALPHGASKELAPKLLKAGIKVIDLSG 98 (121)
T ss_dssp ----HHTTESEEEE-SCHHHHHHHHHHHHHTTSEEEESSS
T ss_pred ----HhhcCCEEEecCchhHHHHHHHHHhhCCcEEEeCCH
Confidence 338899999999999888889999999999999984
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00032 Score=81.78 Aligned_cols=98 Identities=14% Similarity=0.182 Sum_probs=73.1
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
...+|+|+|+|.+|+.+++.|...| .+|.++||+.++++++...+.. .+..+..+.+.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lG--------------------a~V~v~d~~~~~~~~l~~~~g~--~v~~~~~~~~~ 223 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLG--------------------ATVTILDINIDRLRQLDAEFGG--RIHTRYSNAYE 223 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCC--------------------CeEEEEECCHHHHHHHHHhcCc--eeEeccCCHHH
Confidence 4567999999999999999999887 3799999999998888766542 22334556778
Q ss_pred HHHhhccccEEEecCCcc-c-cH----HHHHHHHHhCCeEEEeecc
Q 001559 653 LCKCISQVEIVISLLPAS-C-HV----MVANACIEFKKHLVTASYI 692 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~-~-~~----~v~~aci~~g~~~vD~sy~ 692 (1053)
+.+.++++|+||++++.. . .+ .-....++.|..++|+++.
T Consensus 224 l~~~l~~aDvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva~d 269 (370)
T TIGR00518 224 IEDAVKRADLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVAID 269 (370)
T ss_pred HHHHHccCCEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEEEecC
Confidence 889999999999998431 1 11 1122346778889998853
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00038 Score=80.14 Aligned_cols=99 Identities=19% Similarity=0.228 Sum_probs=71.8
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH---------------------HHH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL---------------------KDA 630 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~---------------------~~a 630 (1053)
.+.++|+|+|+|++|..++.+|++.| + -+++++|++. .|+
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~aG-v------------------g~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka 82 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRAG-I------------------GKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKA 82 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcC-C------------------CEEEEEcCCcccccccCccccccHHHccCCccHH
Confidence 56789999999999999999999998 3 2677777753 233
Q ss_pred H----HHHhcCCCce--EEEecCCCHHHHHHhhccccEEEecCCccc-cHHHHHHHHHhCCeEEEee
Q 001559 631 E----EVIEGIPNAE--AVQLDVSDHKSLCKCISQVEIVISLLPASC-HVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 631 ~----~l~~~~~~~~--~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~-~~~v~~aci~~g~~~vD~s 690 (1053)
+ ++.+..|.++ .+..++ +.+.+.++++++|+||+|+.... ...+.+.|.+.|+.+|..+
T Consensus 83 ~aa~~~l~~inp~v~i~~~~~~~-~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~ 148 (338)
T PRK12475 83 IAAKEHLRKINSEVEIVPVVTDV-TVEELEELVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIYGG 148 (338)
T ss_pred HHHHHHHHHHCCCcEEEEEeccC-CHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 3 3333346554 344455 35678889999999999996543 2456678999999888765
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0004 Score=79.95 Aligned_cols=100 Identities=22% Similarity=0.262 Sum_probs=71.7
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH---------------------HHH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL---------------------KDA 630 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~---------------------~~a 630 (1053)
.+..+|+|+|+|++|++++.+|++.| + -+++++|.+. .|+
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aG-v------------------g~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka 82 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAG-V------------------GKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKA 82 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcC-C------------------CeEEEEeCCccCHHHcCccccccHHHhcCCCcHH
Confidence 46789999999999999999999998 3 2677777752 233
Q ss_pred HH----HHhcCCCce--EEEecCCCHHHHHHhhccccEEEecCCcc-ccHHHHHHHHHhCCeEEEeec
Q 001559 631 EE----VIEGIPNAE--AVQLDVSDHKSLCKCISQVEIVISLLPAS-CHVMVANACIEFKKHLVTASY 691 (1053)
Q Consensus 631 ~~----l~~~~~~~~--~~~~d~~d~~~l~~~i~~~DvVI~~~p~~-~~~~v~~aci~~g~~~vD~sy 691 (1053)
+. +.+..|.++ .+..++ +.+++.++++++|+||+|+... ....+.+.|.+.++.++..+.
T Consensus 83 ~aa~~~l~~inp~v~v~~~~~~~-~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~~ 149 (339)
T PRK07688 83 VAAKKRLEEINSDVRVEAIVQDV-TAEELEELVTGVDLIIDATDNFETRFIVNDAAQKYGIPWIYGAC 149 (339)
T ss_pred HHHHHHHHHHCCCcEEEEEeccC-CHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEee
Confidence 33 223345544 333344 4566778899999999998654 335677889999999887653
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00035 Score=81.65 Aligned_cols=79 Identities=16% Similarity=0.243 Sum_probs=64.0
Q ss_pred CCCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhc-----CCCceEEE
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEG-----IPNAEAVQ 644 (1053)
Q Consensus 571 ~~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~-----~~~~~~~~ 644 (1053)
..+.|+|+|.| +|++|+.+++.|++.+. .+|.+++|+.++.+.+... .++++++.
T Consensus 11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g-------------------~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~ 71 (386)
T PLN02427 11 PIKPLTICMIGAGGFIGSHLCEKLMTETP-------------------HKVLALDVYNDKIKHLLEPDTVPWSGRIQFHR 71 (386)
T ss_pred cccCcEEEEECCcchHHHHHHHHHHhcCC-------------------CEEEEEecCchhhhhhhccccccCCCCeEEEE
Confidence 34568899999 79999999999998742 3788889887766655432 13578899
Q ss_pred ecCCCHHHHHHhhccccEEEecCC
Q 001559 645 LDVSDHKSLCKCISQVEIVISLLP 668 (1053)
Q Consensus 645 ~d~~d~~~l~~~i~~~DvVI~~~p 668 (1053)
+|++|.+.+.++++++|+||+++.
T Consensus 72 ~Dl~d~~~l~~~~~~~d~ViHlAa 95 (386)
T PLN02427 72 INIKHDSRLEGLIKMADLTINLAA 95 (386)
T ss_pred cCCCChHHHHHHhhcCCEEEEccc
Confidence 999999999999999999999985
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00025 Score=79.82 Aligned_cols=106 Identities=29% Similarity=0.357 Sum_probs=80.6
Q ss_pred EEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHHHhhc
Q 001559 579 IIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLCKCIS 658 (1053)
Q Consensus 579 IiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~~~i~ 658 (1053)
+||+|.+|.+++..|++.| .+|.+++|+.++++++.+. ++.. ..++.+.++
T Consensus 1 ~IGlG~mG~~mA~~L~~~G--------------------~~V~v~dr~~~~~~~l~~~--g~~~-------~~s~~~~~~ 51 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAG--------------------HPVRVFDLFPDAVEEAVAA--GAQA-------AASPAEAAE 51 (288)
T ss_pred CCcccHhHHHHHHHHHhCC--------------------CeEEEEeCCHHHHHHHHHc--CCee-------cCCHHHHHh
Confidence 5899999999999999887 3799999999998887653 1211 123567788
Q ss_pred cccEEEecCCcccc-HHHH------HHHHHhCCeEEEeeccChh-HHHHHHHHHHcCCeEEec
Q 001559 659 QVEIVISLLPASCH-VMVA------NACIEFKKHLVTASYIDDS-MSKLDEKAKGAGITILGE 713 (1053)
Q Consensus 659 ~~DvVI~~~p~~~~-~~v~------~aci~~g~~~vD~sy~~~~-~~~L~~~Ak~~Gv~~l~g 713 (1053)
++|+||.|+|.... ..+. ...+..|+.++|++.+++. .+++.+.++++|+.++..
T Consensus 52 ~advVil~vp~~~~~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vda 114 (288)
T TIGR01692 52 GADRVITMLPAGQHVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDA 114 (288)
T ss_pred cCCEEEEeCCChHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEC
Confidence 99999999997543 2332 2345678899999987664 577888899999988763
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0005 Score=74.85 Aligned_cols=115 Identities=22% Similarity=0.313 Sum_probs=69.3
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccc-cccCCCccEEEE-E---ECCHHHHHHHH----hcCCCceE
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMET-DFEWQNDIRVLV-A---SLYLKDAEEVI----EGIPNAEA 642 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~-~~~~~~~~~v~v-~---~r~~~~a~~l~----~~~~~~~~ 642 (1053)
.+.++|+|+|+|++|..++..|++.| +. .+ .+.| |.++.+|+.-.. . +-...|++.++ +..|.+++
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~G-vg---~i-~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i 93 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAG-VG---KL-GLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEI 93 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcC-CC---EE-EEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEE
Confidence 45789999999999999999999998 31 00 1111 112222221111 0 01122443333 34455544
Q ss_pred EEecCC-CHHHHHHhhccccEEEecCCccc-cHHHHHHHHHhCCeEEEeec
Q 001559 643 VQLDVS-DHKSLCKCISQVEIVISLLPASC-HVMVANACIEFKKHLVTASY 691 (1053)
Q Consensus 643 ~~~d~~-d~~~l~~~i~~~DvVI~~~p~~~-~~~v~~aci~~g~~~vD~sy 691 (1053)
...+.. +.+.+.+.++++|+||+|+.... ...+.+.|.+.++.+++...
T Consensus 94 ~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g~ 144 (228)
T cd00757 94 EAYNERLDAENAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGAV 144 (228)
T ss_pred EEecceeCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 333322 45667788899999999996432 34567788888988888753
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00037 Score=84.23 Aligned_cols=98 Identities=18% Similarity=0.262 Sum_probs=71.8
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
...++|+|||+|.+|+.++.+|...| + .+|+|++|+.++++++++.+++...... +.+
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G-~------------------~~V~V~nRs~era~~La~~~~g~~i~~~---~~~ 321 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKG-C------------------TKMVVVNRSEERVAALREEFPDVEIIYK---PLD 321 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCC-C------------------CeEEEEeCCHHHHHHHHHHhCCCceEee---cHh
Confidence 45689999999999999999999876 2 3799999999999999987764332222 335
Q ss_pred HHHHhhccccEEEecCCccc---cHHHHHHHHHh----C--CeEEEeec
Q 001559 652 SLCKCISQVEIVISLLPASC---HVMVANACIEF----K--KHLVTASY 691 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~~~---~~~v~~aci~~----g--~~~vD~sy 691 (1053)
++.+.+.++|+||+|||... ....++.+... + ..++|++-
T Consensus 322 dl~~al~~aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAv 370 (519)
T PLN00203 322 EMLACAAEADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISV 370 (519)
T ss_pred hHHHHHhcCCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCC
Confidence 56778899999999996542 23444443321 1 36899974
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0005 Score=79.70 Aligned_cols=100 Identities=17% Similarity=0.099 Sum_probs=70.8
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH-------------------HHHH-
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL-------------------KDAE- 631 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~-------------------~~a~- 631 (1053)
.+..+|+|+|+|++|..++.+|+..| + -+++++|.+. .|++
T Consensus 26 L~~~~VlivG~GGlGs~~a~~La~~G-v------------------g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~ 86 (355)
T PRK05597 26 LFDAKVAVIGAGGLGSPALLYLAGAG-V------------------GHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAES 86 (355)
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHcC-C------------------CeEEEEeCCEEcccccccCcccChhHCCChHHHH
Confidence 56789999999999999999999988 3 1455555431 2333
Q ss_pred ---HHHhcCCCceEEEecCC-CHHHHHHhhccccEEEecCCcccc-HHHHHHHHHhCCeEEEee
Q 001559 632 ---EVIEGIPNAEAVQLDVS-DHKSLCKCISQVEIVISLLPASCH-VMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 632 ---~l~~~~~~~~~~~~d~~-d~~~l~~~i~~~DvVI~~~p~~~~-~~v~~aci~~g~~~vD~s 690 (1053)
++.+..|.+++...+.. +.+++.++++++|+||+|+..... ..+..+|.+.++.+|..+
T Consensus 87 a~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~ 150 (355)
T PRK05597 87 AREAMLALNPDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAAARLGIPHVWAS 150 (355)
T ss_pred HHHHHHHHCCCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 33444566554433222 456677889999999999965432 456788999999988865
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00022 Score=78.79 Aligned_cols=81 Identities=16% Similarity=0.245 Sum_probs=68.4
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCC-----ceEEEe
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPN-----AEAVQL 645 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~-----~~~~~~ 645 (1053)
.+++.++|-| ++++|+.+|+.|+++| ..|.++.|+.++++++++++.+ ++++.+
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g--------------------~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~ 63 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRG--------------------YNLILVARREDKLEALAKELEDKTGVEVEVIPA 63 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCC--------------------CEEEEEeCcHHHHHHHHHHHHHhhCceEEEEEC
Confidence 4578899999 6999999999999998 3899999999999999877653 568999
Q ss_pred cCCCHHHHHHhhc-------cccEEEecCCcccc
Q 001559 646 DVSDHKSLCKCIS-------QVEIVISLLPASCH 672 (1053)
Q Consensus 646 d~~d~~~l~~~i~-------~~DvVI~~~p~~~~ 672 (1053)
|+++.+++..+.. .+|++||+++++..
T Consensus 64 DLs~~~~~~~l~~~l~~~~~~IdvLVNNAG~g~~ 97 (265)
T COG0300 64 DLSDPEALERLEDELKERGGPIDVLVNNAGFGTF 97 (265)
T ss_pred cCCChhHHHHHHHHHHhcCCcccEEEECCCcCCc
Confidence 9998887776543 48999999998754
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00034 Score=75.79 Aligned_cols=88 Identities=25% Similarity=0.276 Sum_probs=67.4
Q ss_pred EEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH--HHHHHHhcCCCceEEEecCCCHHHH
Q 001559 577 VLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK--DAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 577 VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~--~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
|+|+| +|.+|+.+++.|.+.+ .+|.+.-|+.. .++++.. .+++++.+|..|.++|
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~--------------------~~V~~l~R~~~~~~~~~l~~--~g~~vv~~d~~~~~~l 58 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAG--------------------FSVRALVRDPSSDRAQQLQA--LGAEVVEADYDDPESL 58 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT--------------------GCEEEEESSSHHHHHHHHHH--TTTEEEES-TT-HHHH
T ss_pred CEEECCccHHHHHHHHHHHhCC--------------------CCcEEEEeccchhhhhhhhc--ccceEeecccCCHHHH
Confidence 78999 5999999999999854 48999999864 3444433 2578899999999999
Q ss_pred HHhhccccEEEecCCcc------ccHHHHHHHHHhCCeE
Q 001559 654 CKCISQVEIVISLLPAS------CHVMVANACIEFKKHL 686 (1053)
Q Consensus 654 ~~~i~~~DvVI~~~p~~------~~~~v~~aci~~g~~~ 686 (1053)
.+.++++|+|+.++|.. ....++++|.++|+..
T Consensus 59 ~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~ 97 (233)
T PF05368_consen 59 VAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKH 97 (233)
T ss_dssp HHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SE
T ss_pred HHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccce
Confidence 99999999999999853 2345677888888643
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00081 Score=71.78 Aligned_cols=115 Identities=14% Similarity=0.138 Sum_probs=77.4
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
+.+.++|+|+|.|.+|+.+++.|.+.| .+|.+.|++.++++++.+.+. .+. ++.
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G--------------------~~Vvv~D~~~~~~~~~~~~~g-~~~--v~~--- 78 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEG--------------------AKLIVADINEEAVARAAELFG-ATV--VAP--- 78 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--------------------CEEEEEcCCHHHHHHHHHHcC-CEE--Ecc---
Confidence 467789999999999999999999987 378899999998888877653 332 222
Q ss_pred HHHHHhhccccEEEecCCcc-ccHHHHHHHHHhCCeEEEeeccChhH-HHHHHHHHHcCCeEEecCCC
Q 001559 651 KSLCKCISQVEIVISLLPAS-CHVMVANACIEFKKHLVTASYIDDSM-SKLDEKAKGAGITILGEMGL 716 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~-~~~~v~~aci~~g~~~vD~sy~~~~~-~~L~~~Ak~~Gv~~l~g~G~ 716 (1053)
+++.. .++|+++.|+... .+...++. ++ .+.+++. .+.+-+ .+-.+..+++|+.++++++.
T Consensus 79 ~~l~~--~~~Dv~vp~A~~~~I~~~~~~~-l~-~~~v~~~-AN~~~~~~~~~~~L~~~Gi~~~Pd~~~ 141 (200)
T cd01075 79 EEIYS--VDADVFAPCALGGVINDDTIPQ-LK-AKAIAGA-ANNQLADPRHGQMLHERGILYAPDYVV 141 (200)
T ss_pred hhhcc--ccCCEEEecccccccCHHHHHH-cC-CCEEEEC-CcCccCCHhHHHHHHHCCCEEeCceee
Confidence 22222 2799999887643 23333322 22 2334444 333323 44556678999999997774
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00078 Score=73.92 Aligned_cols=80 Identities=23% Similarity=0.305 Sum_probs=63.7
Q ss_pred CCCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCC
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSD 649 (1053)
Q Consensus 571 ~~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d 649 (1053)
..++++|+|+| +|++|+.++..|++.+ .+|++..|+.+++++.....++++++.+|++|
T Consensus 14 ~~~~~~ilItGasG~iG~~l~~~L~~~g--------------------~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d 73 (251)
T PLN00141 14 NVKTKTVFVAGATGRTGKRIVEQLLAKG--------------------FAVKAGVRDVDKAKTSLPQDPSLQIVRADVTE 73 (251)
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhCC--------------------CEEEEEecCHHHHHHhcccCCceEEEEeeCCC
Confidence 35578999999 6999999999999876 37888899988876654433458889999987
Q ss_pred -HHHHHHhh-ccccEEEecCCcc
Q 001559 650 -HKSLCKCI-SQVEIVISLLPAS 670 (1053)
Q Consensus 650 -~~~l~~~i-~~~DvVI~~~p~~ 670 (1053)
.+.+.+.+ .++|+||++++..
T Consensus 74 ~~~~l~~~~~~~~d~vi~~~g~~ 96 (251)
T PLN00141 74 GSDKLVEAIGDDSDAVICATGFR 96 (251)
T ss_pred CHHHHHHHhhcCCCEEEECCCCC
Confidence 46677777 6899999988753
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00028 Score=72.73 Aligned_cols=73 Identities=21% Similarity=0.182 Sum_probs=63.0
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
|||.||| +|.+|+.+++.+..+| .+|+.+-|++++..++ +++.+.+.|+.|.+++
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RG--------------------HeVTAivRn~~K~~~~----~~~~i~q~Difd~~~~ 56 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRG--------------------HEVTAIVRNASKLAAR----QGVTILQKDIFDLTSL 56 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCC--------------------CeeEEEEeChHhcccc----ccceeecccccChhhh
Confidence 6899999 6999999999999988 3899999998876443 4567889999999999
Q ss_pred HHhhccccEEEecCCccc
Q 001559 654 CKCISQVEIVISLLPASC 671 (1053)
Q Consensus 654 ~~~i~~~DvVI~~~p~~~ 671 (1053)
.+.+.++|+||++.....
T Consensus 57 a~~l~g~DaVIsA~~~~~ 74 (211)
T COG2910 57 ASDLAGHDAVISAFGAGA 74 (211)
T ss_pred HhhhcCCceEEEeccCCC
Confidence 999999999999987653
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00068 Score=81.20 Aligned_cols=123 Identities=15% Similarity=0.203 Sum_probs=88.8
Q ss_pred eEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC-CceEEEecCCCHHHHH
Q 001559 576 SVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 576 ~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~~~~~~d~~d~~~l~ 654 (1053)
+|.|||+|.||.++|+.|++.| .+|.+.+|+.++++++.+... ...+. ...+.+++.
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G--------------------~~V~v~drt~~~~~~l~~~~~~g~~~~--~~~s~~e~v 58 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHG--------------------FTVSVYNRTPEKTDEFLAEHAKGKKIV--GAYSIEEFV 58 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcC--------------------CeEEEEeCCHHHHHHHHhhccCCCCce--ecCCHHHHH
Confidence 3789999999999999999987 389999999999999886522 11111 123456666
Q ss_pred HhhccccEEEecCCcccc-HHHHH---HHHHhCCeEEEeec-cChhHHHHHHHHHHcCCeEEecCCCChhHH
Q 001559 655 KCISQVEIVISLLPASCH-VMVAN---ACIEFKKHLVTASY-IDDSMSKLDEKAKGAGITILGEMGLDPGID 721 (1053)
Q Consensus 655 ~~i~~~DvVI~~~p~~~~-~~v~~---aci~~g~~~vD~sy-~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~ 721 (1053)
+.++++|+||-++|.... ..+.. .+++.|..++|.+- .+.++..+.++++++|+.++. +|+.-|..
T Consensus 59 ~~l~~~dvIil~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvd-apVsGG~~ 129 (467)
T TIGR00873 59 QSLERPRKIMLMVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVG-SGVSGGEE 129 (467)
T ss_pred hhcCCCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEc-CCCCCCHH
Confidence 666789999999988533 33332 34567889999985 456667777788899997654 66554543
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00014 Score=83.97 Aligned_cols=96 Identities=18% Similarity=0.208 Sum_probs=65.8
Q ss_pred CeEEEEcC-chhhHHHHHHHHhCCCCCcccccccccccccCCCccEEE-EEECCHHHHHHHHhcCCCceEE-EecCCCHH
Q 001559 575 SSVLIIGA-GRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVL-VASLYLKDAEEVIEGIPNAEAV-QLDVSDHK 651 (1053)
Q Consensus 575 ~~VlIiGa-G~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~-v~~r~~~~a~~l~~~~~~~~~~-~~d~~d~~ 651 (1053)
++|+|+|+ |++|+.+++.|.+++. .++. +++++....+.+.+.++..... ..++.+ .
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~-------------------~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~-~ 60 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPE-------------------VEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEP-I 60 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCC-------------------ceEEEEeccchhcCCChHHhCccccccCCceeec-C
Confidence 47999996 9999999999998763 3555 5454443333344444432211 111211 1
Q ss_pred HHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEee
Q 001559 652 SLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~s 690 (1053)
+..+++.++|+|+.|+|...+..++..++++|+++||.|
T Consensus 61 ~~~~~~~~~DvVf~alP~~~s~~~~~~~~~~G~~VIDlS 99 (346)
T TIGR01850 61 DEEEIAEDADVVFLALPHGVSAELAPELLAAGVKVIDLS 99 (346)
T ss_pred CHHHhhcCCCEEEECCCchHHHHHHHHHHhCCCEEEeCC
Confidence 223444589999999999999999999999999999998
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0006 Score=78.44 Aligned_cols=76 Identities=12% Similarity=0.247 Sum_probs=59.1
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCC-CHH
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVS-DHK 651 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~-d~~ 651 (1053)
+|+|+|.| +|++|+.+++.|.+.++ .+|...+|+.++...+.. .++++++.+|++ +.+
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~-------------------~~V~~~~r~~~~~~~~~~-~~~~~~~~~Dl~~~~~ 60 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTD-------------------WEVYGMDMQTDRLGDLVN-HPRMHFFEGDITINKE 60 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCC-------------------CeEEEEeCcHHHHHHhcc-CCCeEEEeCCCCCCHH
Confidence 46899999 59999999999987642 378888887665544432 235788899997 677
Q ss_pred HHHHhhccccEEEecCCc
Q 001559 652 SLCKCISQVEIVISLLPA 669 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~ 669 (1053)
.+.++++++|+||+++..
T Consensus 61 ~~~~~~~~~d~ViH~aa~ 78 (347)
T PRK11908 61 WIEYHVKKCDVILPLVAI 78 (347)
T ss_pred HHHHHHcCCCEEEECccc
Confidence 788888999999998753
|
|
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00066 Score=78.16 Aligned_cols=156 Identities=20% Similarity=0.159 Sum_probs=90.9
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC----------HHHHHHHHhcCCCceEEE
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY----------LKDAEEVIEGIPNAEAVQ 644 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~----------~~~a~~l~~~~~~~~~~~ 644 (1053)
.+|.|+|+|.||+.+++.|.++.. .+..+++.++. -+.|++++ .+++.+..+.........
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~----~l~~~~G~~l~-----VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~ 73 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSR----VFKERYGVELK-----VVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWG 73 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHH----HHHHHcCCCEE-----EEEEEeCCccccCCCCCChHHHHHhhhccCchhhcc
Confidence 689999999999999999877421 01111111111 35667754 222222222221111110
Q ss_pred ecCC-CHHHHHHhh--ccccEEEecCCccccHHHHHHHHHhCCeEEEeec--cChhHHHHHHHHHHcCCeEEecCCCChh
Q 001559 645 LDVS-DHKSLCKCI--SQVEIVISLLPASCHVMVANACIEFKKHLVTASY--IDDSMSKLDEKAKGAGITILGEMGLDPG 719 (1053)
Q Consensus 645 ~d~~-d~~~l~~~i--~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy--~~~~~~~L~~~Ak~~Gv~~l~g~G~dPG 719 (1053)
-+.. ..-++.+++ .++|+||++++...+..+...|++.|+|+|..+- ......+|.+.|+++|+.+..+.++.-|
T Consensus 74 ~~~~~~~~~~~ell~~~~~DVvVd~t~~~~a~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~G 153 (336)
T PRK08374 74 NDYEVYNFSPEEIVEEIDADIVVDVTNDKNAHEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAG 153 (336)
T ss_pred ccccccCCCHHHHHhcCCCCEEEECCCcHHHHHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEecccccc
Confidence 0000 001344555 3699999999876667788899999999998862 2234457888899999999977766545
Q ss_pred HHHHHHHHHHHHhhhccCceEEEE
Q 001559 720 IDHMMAMKMINHAHVRKGKIKSFT 743 (1053)
Q Consensus 720 i~~mla~~~i~~~~~~~~~v~sf~ 743 (1053)
+.-+-. +++.. .+++|.+|+
T Consensus 154 iPii~~---l~~~l-~g~~i~~i~ 173 (336)
T PRK08374 154 TPIIGL---LRENL-LGDTVKRIE 173 (336)
T ss_pred CCchHH---HHhhc-cccceEEEE
Confidence 443321 22221 455666665
|
|
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00028 Score=80.93 Aligned_cols=116 Identities=18% Similarity=0.178 Sum_probs=81.3
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC---CceEEEecCC
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP---NAEAVQLDVS 648 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~---~~~~~~~d~~ 648 (1053)
....+|.|||+|.+|+..++.|.....+ ..|.|++|+.++++++++.+. ++.+...
T Consensus 127 ~~~~~vgiiG~G~qa~~h~~al~~~~~i------------------~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~--- 185 (326)
T PRK06046 127 KDSKVVGIIGAGNQARTQLLALSEVFDL------------------EEVRVYDRTKSSAEKFVERMSSVVGCDVTVA--- 185 (326)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCc------------------eEEEEECCCHHHHHHHHHHHHhhcCceEEEe---
Confidence 3467899999999999999999765433 379999999999999887653 1222222
Q ss_pred CHHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeeccChhHHHHHHHHHHcCCeEEe
Q 001559 649 DHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILG 712 (1053)
Q Consensus 649 d~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~l~ 712 (1053)
++++++++ +|+|++|||... +-+....++.|+|+.-+....|.+++++.+.-+....++.
T Consensus 186 --~~~~~~l~-aDiVv~aTps~~-P~~~~~~l~~g~hV~~iGs~~p~~~El~~~~~~~a~vvvD 245 (326)
T PRK06046 186 --EDIEEACD-CDILVTTTPSRK-PVVKAEWIKEGTHINAIGADAPGKQELDPEILLRAKVVVD 245 (326)
T ss_pred --CCHHHHhh-CCEEEEecCCCC-cEecHHHcCCCCEEEecCCCCCccccCCHHHHhCCcEEEC
Confidence 23455665 999999999743 3334556899999888876566667776554444433443
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00096 Score=71.85 Aligned_cols=99 Identities=22% Similarity=0.237 Sum_probs=62.8
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC------------------HHHHHHH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY------------------LKDAEEV 633 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~------------------~~~a~~l 633 (1053)
.+..+|+|+|+|++|..++.+|++.| + -+++++|.+ ..|++.+
T Consensus 26 L~~~~V~ViG~GglGs~ia~~La~~G-v------------------g~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a 86 (212)
T PRK08644 26 LKKAKVGIAGAGGLGSNIAVALARSG-V------------------GNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEAL 86 (212)
T ss_pred HhCCCEEEECcCHHHHHHHHHHHHcC-C------------------CeEEEEeCCEeccccccccEeehhhCCChHHHHH
Confidence 45788999999999999999999988 3 145555554 1244333
Q ss_pred H----hcCCCceEEEecCC-CHHHHHHhhccccEEEecCCcccc-HHHHHHHHHh-CCeEEEe
Q 001559 634 I----EGIPNAEAVQLDVS-DHKSLCKCISQVEIVISLLPASCH-VMVANACIEF-KKHLVTA 689 (1053)
Q Consensus 634 ~----~~~~~~~~~~~d~~-d~~~l~~~i~~~DvVI~~~p~~~~-~~v~~aci~~-g~~~vD~ 689 (1053)
+ +..|.+++...+.. +.+.+.+.++++|+||+|+..... ..+...|.+. ++.++..
T Consensus 87 ~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~ 149 (212)
T PRK08644 87 KENLLEINPFVEIEAHNEKIDEDNIEELFKDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAA 149 (212)
T ss_pred HHHHHHHCCCCEEEEEeeecCHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEe
Confidence 3 33455544333321 345666788889999999754322 3345556665 6665554
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00081 Score=76.89 Aligned_cols=79 Identities=19% Similarity=0.202 Sum_probs=63.2
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC--CCceEEEecCCC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI--PNAEAVQLDVSD 649 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~--~~~~~~~~d~~d 649 (1053)
++++|+|.| +|++|+.+++.|++.+. ..+|.+.+|+..+..++...+ +++.++.+|++|
T Consensus 3 ~~k~vLVTGatG~IG~~l~~~L~~~g~------------------~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d 64 (324)
T TIGR03589 3 NNKSILITGGTGSFGKAFISRLLENYN------------------PKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRD 64 (324)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhCC------------------CcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCC
Confidence 357899999 79999999999998752 137888898876655444433 357788999999
Q ss_pred HHHHHHhhccccEEEecCCc
Q 001559 650 HKSLCKCISQVEIVISLLPA 669 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~ 669 (1053)
.+.+.++++++|+||+++..
T Consensus 65 ~~~l~~~~~~iD~Vih~Ag~ 84 (324)
T TIGR03589 65 KERLTRALRGVDYVVHAAAL 84 (324)
T ss_pred HHHHHHHHhcCCEEEECccc
Confidence 99999999999999999864
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0008 Score=79.09 Aligned_cols=79 Identities=27% Similarity=0.362 Sum_probs=63.4
Q ss_pred CCCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHH------HHHhcCCCceEE
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAE------EVIEGIPNAEAV 643 (1053)
Q Consensus 571 ~~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~------~l~~~~~~~~~~ 643 (1053)
..++++|+|+| +|++|+.+++.|.+.| .+|.+++|+..+.+ ++....++++.+
T Consensus 57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G--------------------~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v 116 (390)
T PLN02657 57 EPKDVTVLVVGATGYIGKFVVRELVRRG--------------------YNVVAVAREKSGIRGKNGKEDTKKELPGAEVV 116 (390)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCC--------------------CEEEEEEechhhccccchhhHHhhhcCCceEE
Confidence 45678999999 6999999999999887 37888999875432 222334578899
Q ss_pred EecCCCHHHHHHhhc----cccEEEecCCc
Q 001559 644 QLDVSDHKSLCKCIS----QVEIVISLLPA 669 (1053)
Q Consensus 644 ~~d~~d~~~l~~~i~----~~DvVI~~~p~ 669 (1053)
.+|++|.+.+.++++ ++|+||+|+..
T Consensus 117 ~~Dl~d~~~l~~~~~~~~~~~D~Vi~~aa~ 146 (390)
T PLN02657 117 FGDVTDADSLRKVLFSEGDPVDVVVSCLAS 146 (390)
T ss_pred EeeCCCHHHHHHHHHHhCCCCcEEEECCcc
Confidence 999999999998887 58999998753
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00092 Score=72.98 Aligned_cols=100 Identities=14% Similarity=0.152 Sum_probs=59.7
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH--------------------HH-
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK--------------------DA- 630 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~--------------------~a- 630 (1053)
.+..+|+|+|+|++|.+++..|++.| + -+++++|.+.- ++
T Consensus 25 L~~~~VlIiG~GGlGs~ia~~La~~G-v------------------g~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~ 85 (231)
T PRK08328 25 LKKAKVAVVGVGGLGSPVAYYLAAAG-V------------------GRILLIDEQTPELSNLNRQILHWEEDLGKNPKPL 85 (231)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcC-C------------------CEEEEEcCCccChhhhccccccChhhcCchHHHH
Confidence 45788999999999999999999998 3 14555554311 11
Q ss_pred ---HHHHhcCCCceEEEecCC-CHHHHHHhhccccEEEecCCccc-cHHHHHHHHHhCCeEEEee
Q 001559 631 ---EEVIEGIPNAEAVQLDVS-DHKSLCKCISQVEIVISLLPASC-HVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 631 ---~~l~~~~~~~~~~~~d~~-d~~~l~~~i~~~DvVI~~~p~~~-~~~v~~aci~~g~~~vD~s 690 (1053)
+++.+..|.+.+...... +.+++.++++++|+||+|+.... ...+.+.|.+.+++++..+
T Consensus 86 ~a~~~l~~~np~v~v~~~~~~~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~ 150 (231)
T PRK08328 86 SAKWKLERFNSDIKIETFVGRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGA 150 (231)
T ss_pred HHHHHHHHhCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 122233454443322211 34455666777777777775421 2334455667777666653
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00067 Score=79.63 Aligned_cols=114 Identities=18% Similarity=0.178 Sum_probs=72.5
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccc-cCCCccEEEEE-E-C--CHHHH----HHHHhcCCCceE
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDF-EWQNDIRVLVA-S-L--YLKDA----EEVIEGIPNAEA 642 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~-~~~~~~~v~v~-~-r--~~~~a----~~l~~~~~~~~~ 642 (1053)
.+..+|+|+|+|++|..++.+|+..| +. ...++|+. ++.+|+.-.+. + . ...|+ +++.+..|.+++
T Consensus 36 L~~~~VlivG~GGlG~~va~~La~~G-vg----~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v 110 (390)
T PRK07411 36 LKAASVLCIGTGGLGSPLLLYLAAAG-IG----RIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQV 110 (390)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcC-CC----EEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeE
Confidence 56789999999999999999999988 31 11222222 33333322221 0 0 11133 344444566555
Q ss_pred EEecCC-CHHHHHHhhccccEEEecCCcc-ccHHHHHHHHHhCCeEEEee
Q 001559 643 VQLDVS-DHKSLCKCISQVEIVISLLPAS-CHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 643 ~~~d~~-d~~~l~~~i~~~DvVI~~~p~~-~~~~v~~aci~~g~~~vD~s 690 (1053)
...+.. +.+...++++++|+||+|+... ....+.+.|.+.++.+|..+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~ 160 (390)
T PRK07411 111 DLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGS 160 (390)
T ss_pred EEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 444322 4456678899999999999654 34567789999999988764
|
|
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00031 Score=80.55 Aligned_cols=112 Identities=17% Similarity=0.136 Sum_probs=80.4
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCC--ceEEEecCCC
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPN--AEAVQLDVSD 649 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~--~~~~~~d~~d 649 (1053)
...+++.|||+|.+|+..++.|...... .+|.|++|+.++++++++.+.+ +++..+
T Consensus 126 ~~~~~lgiiG~G~qA~~~l~al~~~~~~------------------~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~---- 183 (325)
T TIGR02371 126 KDSSVLGIIGAGRQAWTQLEALSRVFDL------------------EEVSVYCRTPSTREKFALRASDYEVPVRAA---- 183 (325)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCC------------------CEEEEECCCHHHHHHHHHHHHhhCCcEEEe----
Confidence 3457899999999999998888664322 4899999999999988876532 222222
Q ss_pred HHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeeccChhHHHHHHHHHHcC
Q 001559 650 HKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAG 707 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~~~~~~L~~~Ak~~G 707 (1053)
++..++++++|+|+.|||.. .+.+....++.|+|+.-+....+.+++++...-++.
T Consensus 184 -~~~~eav~~aDiVitaT~s~-~P~~~~~~l~~g~~v~~vGs~~p~~~Eld~~~l~~a 239 (325)
T TIGR02371 184 -TDPREAVEGCDILVTTTPSR-KPVVKADWVSEGTHINAIGADAPGKQELDPEILKNA 239 (325)
T ss_pred -CCHHHHhccCCEEEEecCCC-CcEecHHHcCCCCEEEecCCCCcccccCCHHHHhcC
Confidence 34567788999999999863 233345678999998888765666667665544433
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0011 Score=66.74 Aligned_cols=97 Identities=21% Similarity=0.248 Sum_probs=64.3
Q ss_pred eEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC-------------------HHHHHHHH--
Q 001559 576 SVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY-------------------LKDAEEVI-- 634 (1053)
Q Consensus 576 ~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~-------------------~~~a~~l~-- 634 (1053)
+|+|+|+|++|..+++.|++.| + -+++++|.+ ..|++.++
T Consensus 1 ~VliiG~GglGs~ia~~L~~~G-v------------------~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~ 61 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSG-V------------------GKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARR 61 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCC-C------------------CEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHH
Confidence 5899999999999999999988 3 256666543 12333333
Q ss_pred --hcCCCceEEEecCC-CHHHHHHhhccccEEEecCCccc-cHHHHHHHHHhCCeEEEeec
Q 001559 635 --EGIPNAEAVQLDVS-DHKSLCKCISQVEIVISLLPASC-HVMVANACIEFKKHLVTASY 691 (1053)
Q Consensus 635 --~~~~~~~~~~~d~~-d~~~l~~~i~~~DvVI~~~p~~~-~~~v~~aci~~g~~~vD~sy 691 (1053)
+..|.+++...+.. +.....+.++++|+||+|+.... ...+.+.|.+.++++++...
T Consensus 62 l~~~~p~v~i~~~~~~~~~~~~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~ 122 (143)
T cd01483 62 LNELNPGVNVTAVPEGISEDNLDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGG 122 (143)
T ss_pred HHHHCCCcEEEEEeeecChhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 33455554333322 22334577788999999986532 24567788888888888764
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00062 Score=76.91 Aligned_cols=108 Identities=19% Similarity=0.197 Sum_probs=78.1
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
++|.+||+|.+|.++++.|.+.| .+|.+++|++. ++++.+. . +.. ..+..
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G--------------------~~v~v~~~~~~-~~~~~~~-g-~~~-------~~s~~ 50 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAG--------------------HQLHVTTIGPV-ADELLSL-G-AVS-------VETAR 50 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCC--------------------CeEEEEeCCHh-HHHHHHc-C-Cee-------cCCHH
Confidence 36999999999999999999887 37889999874 5555432 1 211 12344
Q ss_pred HhhccccEEEecCCcccc-HHHH------HHHHHhCCeEEEeeccCh-hHHHHHHHHHHcCCeEEe
Q 001559 655 KCISQVEIVISLLPASCH-VMVA------NACIEFKKHLVTASYIDD-SMSKLDEKAKGAGITILG 712 (1053)
Q Consensus 655 ~~i~~~DvVI~~~p~~~~-~~v~------~aci~~g~~~vD~sy~~~-~~~~L~~~Ak~~Gv~~l~ 712 (1053)
++.+++|+||.|+|..-. ..+. ...+..|+.++|+|..++ .++++.+.++++|+.++.
T Consensus 51 ~~~~~advVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vd 116 (292)
T PRK15059 51 QVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLD 116 (292)
T ss_pred HHHhcCCEEEEeCCChHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 567899999999996532 1221 112456889999997665 456798999999998877
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0021 Score=71.40 Aligned_cols=100 Identities=22% Similarity=0.233 Sum_probs=66.9
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC-------------------HHHHH-
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY-------------------LKDAE- 631 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~-------------------~~~a~- 631 (1053)
.+..+|+|+|+|++|..+++.|++.| + -+++++|.+ ..|++
T Consensus 28 L~~s~VlVvG~GGVGs~vae~Lar~G-V------------------g~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~ 88 (268)
T PRK15116 28 FADAHICVVGIGGVGSWAAEALARTG-I------------------GAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEV 88 (268)
T ss_pred hcCCCEEEECcCHHHHHHHHHHHHcC-C------------------CEEEEEeCCEecccccccccccChhhcChHHHHH
Confidence 46789999999999999999999988 3 144444433 12333
Q ss_pred ---HHHhcCCCceEEEecCC-CHHHHHHhhc-cccEEEecCCcc-ccHHHHHHHHHhCCeEEEee
Q 001559 632 ---EVIEGIPNAEAVQLDVS-DHKSLCKCIS-QVEIVISLLPAS-CHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 632 ---~l~~~~~~~~~~~~d~~-d~~~l~~~i~-~~DvVI~~~p~~-~~~~v~~aci~~g~~~vD~s 690 (1053)
++.+..|.+++...+.. +.+.+.+++. ++|+||+|.... ....+.+.|.+.+..++.+.
T Consensus 89 ~~~rl~~INP~~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~g 153 (268)
T PRK15116 89 MAERIRQINPECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTG 153 (268)
T ss_pred HHHHHHhHCCCcEEEEEecccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 33344566555444322 4556666664 699999998642 33456778888888887764
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00036 Score=79.12 Aligned_cols=109 Identities=15% Similarity=0.152 Sum_probs=81.0
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCC---ceEEEecCCC
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPN---AEAVQLDVSD 649 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~---~~~~~~d~~d 649 (1053)
..+++.|||+|..|+..++.+..-.++ .+|.|++|+.++++++++.+.. +++..+
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~~i------------------~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~---- 173 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVYNP------------------KRIRVYSRNFDHARAFAERFSKEFGVDIRPV---- 173 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCC------------------CEEEEECCCHHHHHHHHHHHHHhcCCcEEEe----
Confidence 468899999999999999998875433 3899999999999998877542 233322
Q ss_pred HHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeeccChhHHHHHHHHHH
Q 001559 650 HKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKG 705 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~~~~~~L~~~Ak~ 705 (1053)
+++.+++.++|||+.+||.. .+-+-...+++|+|+.-+....|.+++++...-+
T Consensus 174 -~~~~eav~~aDIV~taT~s~-~P~~~~~~l~pg~hV~aiGs~~p~~~El~~~~l~ 227 (301)
T PRK06407 174 -DNAEAALRDADTITSITNSD-TPIFNRKYLGDEYHVNLAGSNYPNRREAEHSVLN 227 (301)
T ss_pred -CCHHHHHhcCCEEEEecCCC-CcEecHHHcCCCceEEecCCCCCCcccCCHHHHH
Confidence 44778889999999999854 2333455789999988876555666677654333
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00095 Score=77.78 Aligned_cols=100 Identities=23% Similarity=0.207 Sum_probs=70.0
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC-------------------HHHHHH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY-------------------LKDAEE 632 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~-------------------~~~a~~ 632 (1053)
.+..+|+|+|+|++|..++.+|+..| + -+++++|.+ ..|++.
T Consensus 39 l~~~~VliiG~GglG~~v~~~La~~G-v------------------g~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~ 99 (370)
T PRK05600 39 LHNARVLVIGAGGLGCPAMQSLASAG-V------------------GTITLIDDDTVDVSNIHRQILFGASDVGRPKVEV 99 (370)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcC-C------------------CEEEEEeCCEEccccccccccCChhHCCCHHHHH
Confidence 45788999999999999999999988 3 144444443 234443
Q ss_pred HH----hcCCCceEEEecCC-CHHHHHHhhccccEEEecCCccc-cHHHHHHHHHhCCeEEEee
Q 001559 633 VI----EGIPNAEAVQLDVS-DHKSLCKCISQVEIVISLLPASC-HVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 633 l~----~~~~~~~~~~~d~~-d~~~l~~~i~~~DvVI~~~p~~~-~~~v~~aci~~g~~~vD~s 690 (1053)
++ +..|.+++...+.. +.+.+.++++++|+||+|+...- ...+.+.|.+.++.+|..+
T Consensus 100 ~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~ 163 (370)
T PRK05600 100 AAERLKEIQPDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAAEITGTPLVWGT 163 (370)
T ss_pred HHHHHHHHCCCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 33 34465544333321 45667789999999999997543 3456788999999988775
|
|
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00062 Score=76.27 Aligned_cols=93 Identities=16% Similarity=0.144 Sum_probs=66.7
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHH-HHHhcCCCceEEEecCCCHHHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAE-EVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~-~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
.+|.|||+|.+|+..+..+.+...+ .-+.|+++++++.. +.++.+. +.... .+.+.+
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~------------------elvaV~d~d~es~~la~A~~~G-i~~~~---~~~e~l 59 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHL------------------EMVAMVGIDPESDGLARARELG-VKTSA---EGVDGL 59 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCc------------------EEEEEEeCCcccHHHHHHHHCC-CCEEE---CCHHHH
Confidence 5899999999999887777665422 14678898877543 4455443 22221 123333
Q ss_pred HHhhccccEEEecCCccccHHHHHHHHHhCCeEEEee
Q 001559 654 CKCISQVEIVISLLPASCHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 654 ~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~s 690 (1053)
.+. .+.|+|+.+||...|...+..|+++|+|++|.+
T Consensus 60 l~~-~dIDaV~iaTp~~~H~e~a~~al~aGk~VIdek 95 (285)
T TIGR03215 60 LAN-PDIDIVFDATSAKAHARHARLLAELGKIVIDLT 95 (285)
T ss_pred hcC-CCCCEEEECCCcHHHHHHHHHHHHcCCEEEECC
Confidence 221 368999999999999999999999999999987
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0021 Score=70.05 Aligned_cols=100 Identities=17% Similarity=0.190 Sum_probs=64.4
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC-------------------HHHHH-
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY-------------------LKDAE- 631 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~-------------------~~~a~- 631 (1053)
.+..+|+|+|+|++|+.+++.|++.| + -+++++|.+ ..|++
T Consensus 9 L~~~~VlVvG~GGvGs~va~~Lar~G-V------------------g~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~ 69 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARSG-V------------------GKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEV 69 (231)
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcC-C------------------CEEEEECCCEECchhhcchhCcChhhCCCcHHHH
Confidence 45688999999999999999999998 3 144444432 12333
Q ss_pred ---HHHhcCCCceEEEecCC-CHHHHHHhhc-cccEEEecCCccc-cHHHHHHHHHhCCeEEEee
Q 001559 632 ---EVIEGIPNAEAVQLDVS-DHKSLCKCIS-QVEIVISLLPASC-HVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 632 ---~l~~~~~~~~~~~~d~~-d~~~l~~~i~-~~DvVI~~~p~~~-~~~v~~aci~~g~~~vD~s 690 (1053)
++.+..|.+++...+.. +.+++.+++. ++|+||+|+.... ...+.+.|.+.+..++...
T Consensus 70 ~~~~l~~inP~~~V~~~~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~ 134 (231)
T cd00755 70 MAERIRDINPECEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSM 134 (231)
T ss_pred HHHHHHHHCCCcEEEEeeeecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 33344565555444322 3455666664 5899999975432 2446677888888777654
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0019 Score=73.94 Aligned_cols=128 Identities=17% Similarity=0.174 Sum_probs=76.2
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccE-EEEEECCHHH-------HHHHHhcCCCceEEEec
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIR-VLVASLYLKD-------AEEVIEGIPNAEAVQLD 646 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-v~v~~r~~~~-------a~~l~~~~~~~~~~~~d 646 (1053)
++|.|+|+|.+|+.+++.|.+.... .++.. +++ |.|++++... .+++.+...+-.....+
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~------~~~g~------~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~ 68 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDD------RRNNN------GISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEID 68 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHh------HhcCC------CeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCC
Confidence 4799999999999999999774210 00011 123 5667765311 11221111100000111
Q ss_pred CC--CHHHHHHhhccccEEEecCCccc----cHHHHHHHHHhCCeEEEeec--cChhHHHHHHHHHHcCCeEEecCCC
Q 001559 647 VS--DHKSLCKCISQVEIVISLLPASC----HVMVANACIEFKKHLVTASY--IDDSMSKLDEKAKGAGITILGEMGL 716 (1053)
Q Consensus 647 ~~--d~~~l~~~i~~~DvVI~~~p~~~----~~~v~~aci~~g~~~vD~sy--~~~~~~~L~~~Ak~~Gv~~l~g~G~ 716 (1053)
.. +.+.+.+ .++|+||.|+|... .......+++.|+|+|.++= ......+|.+.|++.|+.+..+.-+
T Consensus 69 ~~~~~~~~ll~--~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~~eatV 144 (326)
T PRK06392 69 YEKIKFDEIFE--IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEATV 144 (326)
T ss_pred CCcCCHHHHhc--CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEEEeeee
Confidence 11 2333322 37899999998532 13445889999999999972 2334568888999999999876543
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00088 Score=78.77 Aligned_cols=114 Identities=19% Similarity=0.177 Sum_probs=72.9
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccc-cCCCccEEEEE-E---CCHHHHHH----HHhcCCCceE
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDF-EWQNDIRVLVA-S---LYLKDAEE----VIEGIPNAEA 642 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~-~~~~~~~v~v~-~---r~~~~a~~----l~~~~~~~~~ 642 (1053)
.+..+|+|+|+|++|..++.+|+..| +. ...++|++ ++.+|+.-.+. . .-..|++. +.+..|.+++
T Consensus 40 L~~~~VlviG~GGlGs~va~~La~~G-vg----~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i 114 (392)
T PRK07878 40 LKNARVLVIGAGGLGSPTLLYLAAAG-VG----TLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNV 114 (392)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHcC-CC----eEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEE
Confidence 45789999999999999999999988 31 11233332 44444432221 1 11224433 3344566555
Q ss_pred EEecCC-CHHHHHHhhccccEEEecCCccc-cHHHHHHHHHhCCeEEEee
Q 001559 643 VQLDVS-DHKSLCKCISQVEIVISLLPASC-HVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 643 ~~~d~~-d~~~l~~~i~~~DvVI~~~p~~~-~~~v~~aci~~g~~~vD~s 690 (1053)
...+.. +.+.+.++++++|+||+|+.... ...+.+.|.+.++.+|..+
T Consensus 115 ~~~~~~i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~ 164 (392)
T PRK07878 115 RLHEFRLDPSNAVELFSQYDLILDGTDNFATRYLVNDAAVLAGKPYVWGS 164 (392)
T ss_pred EEEeccCChhHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 433222 44566788999999999986432 3457788999999988764
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00054 Score=75.20 Aligned_cols=77 Identities=22% Similarity=0.253 Sum_probs=63.8
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC--CceEEEecCCCH
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP--NAEAVQLDVSDH 650 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~--~~~~~~~d~~d~ 650 (1053)
+++++|.| +|++|+.+++.|++.| .+|.+++|+.+..+++...++ ++.++++|++|.
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~ 60 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEG--------------------WRVGAYDINEAGLAALAAELGAGNAWTGALDVTDR 60 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCC--------------------CeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCH
Confidence 46799999 7999999999999987 378999999998888877654 477889999998
Q ss_pred HHHHHhhcc--------ccEEEecCCcc
Q 001559 651 KSLCKCISQ--------VEIVISLLPAS 670 (1053)
Q Consensus 651 ~~l~~~i~~--------~DvVI~~~p~~ 670 (1053)
+++.+++.+ .|+||++++..
T Consensus 61 ~~v~~~~~~~~~~~~~~id~vi~~ag~~ 88 (260)
T PRK08267 61 AAWDAALADFAAATGGRLDVLFNNAGIL 88 (260)
T ss_pred HHHHHHHHHHHHHcCCCCCEEEECCCCC
Confidence 888766553 59999998753
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00084 Score=79.74 Aligned_cols=95 Identities=28% Similarity=0.299 Sum_probs=70.0
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
...++|+|+|+|.+|+.++.+|...| + .+|.+++|+.+++++++..++. .++ +.+
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G-~------------------~~V~v~~r~~~ra~~la~~~g~-~~~-----~~~ 234 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKG-V------------------RKITVANRTLERAEELAEEFGG-EAI-----PLD 234 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCC-C------------------CeEEEEeCCHHHHHHHHHHcCC-cEe-----eHH
Confidence 45689999999999999999998876 2 2799999999999999887752 222 335
Q ss_pred HHHHhhccccEEEecCCccc---cHHHHHHHHH----hCCeEEEeec
Q 001559 652 SLCKCISQVEIVISLLPASC---HVMVANACIE----FKKHLVTASY 691 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~~~---~~~v~~aci~----~g~~~vD~sy 691 (1053)
++.+.+.++|+||+|||..- .....+.++. .+..++|++.
T Consensus 235 ~~~~~l~~aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 235 ELPEALAEADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred HHHHHhccCCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCC
Confidence 66778889999999997542 2333333332 2356899974
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0033 Score=60.41 Aligned_cols=108 Identities=27% Similarity=0.282 Sum_probs=76.4
Q ss_pred EEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHHH-
Q 001559 577 VLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLCK- 655 (1053)
Q Consensus 577 VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~~- 655 (1053)
|+|+|+|.+|+.+++.|.+.+ .+|.++++++++++++.+.. +.++..|.+|.+.|.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~--------------------~~vvvid~d~~~~~~~~~~~--~~~i~gd~~~~~~l~~a 58 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG--------------------IDVVVIDRDPERVEELREEG--VEVIYGDATDPEVLERA 58 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT--------------------SEEEEEESSHHHHHHHHHTT--SEEEES-TTSHHHHHHT
T ss_pred eEEEcCCHHHHHHHHHHHhCC--------------------CEEEEEECCcHHHHHHHhcc--cccccccchhhhHHhhc
Confidence 689999999999999999854 48999999999999888764 7899999999999884
Q ss_pred hhccccEEEecCCcccc-HHHHHHHHH--hCCeEEEeeccChhHHHHHHHHHHcCCeE
Q 001559 656 CISQVEIVISLLPASCH-VMVANACIE--FKKHLVTASYIDDSMSKLDEKAKGAGITI 710 (1053)
Q Consensus 656 ~i~~~DvVI~~~p~~~~-~~v~~aci~--~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~ 710 (1053)
-++++|.||.+++-... ..++..+-+ ...+++-....+... +..++.|+..
T Consensus 59 ~i~~a~~vv~~~~~d~~n~~~~~~~r~~~~~~~ii~~~~~~~~~----~~l~~~g~d~ 112 (116)
T PF02254_consen 59 GIEKADAVVILTDDDEENLLIALLARELNPDIRIIARVNDPENA----ELLRQAGADH 112 (116)
T ss_dssp TGGCESEEEEESSSHHHHHHHHHHHHHHTTTSEEEEEESSHHHH----HHHHHTT-SE
T ss_pred CccccCEEEEccCCHHHHHHHHHHHHHHCCCCeEEEEECCHHHH----HHHHHCCcCE
Confidence 58899999999985432 233333333 234555555544333 3445666643
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0014 Score=68.52 Aligned_cols=94 Identities=22% Similarity=0.254 Sum_probs=56.5
Q ss_pred eEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH------------------HHHHHHH---
Q 001559 576 SVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL------------------KDAEEVI--- 634 (1053)
Q Consensus 576 ~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~------------------~~a~~l~--- 634 (1053)
+|+|+|+|++|..++.+|++.| + -+++++|.+. .|++.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~G-v------------------g~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l 61 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSG-V------------------GNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENL 61 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcC-C------------------CeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHH
Confidence 5899999999999999999988 3 1456655543 2333332
Q ss_pred -hcCCCceEEEecCC-CHHHHHHhhccccEEEecCCcccc-HHHHHHHHHh-CCeEEE
Q 001559 635 -EGIPNAEAVQLDVS-DHKSLCKCISQVEIVISLLPASCH-VMVANACIEF-KKHLVT 688 (1053)
Q Consensus 635 -~~~~~~~~~~~d~~-d~~~l~~~i~~~DvVI~~~p~~~~-~~v~~aci~~-g~~~vD 688 (1053)
+..|.+++...+.. +.+.+.+.++++|+||+|+..... ..+...|.+. ++.++.
T Consensus 62 ~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~ 119 (174)
T cd01487 62 REINPFVKIEAINIKIDENNLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVC 119 (174)
T ss_pred HHHCCCCEEEEEEeecChhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 33455444333221 445667788889999988654221 2233444444 444443
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00062 Score=75.33 Aligned_cols=92 Identities=13% Similarity=0.146 Sum_probs=66.6
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
++|.|||+|.+|+++++.|.+.+ +. ...+.+.+|+.++++++.+.++++... .+..
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g-~~----------------~~~i~v~~r~~~~~~~l~~~~~~~~~~-------~~~~ 56 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSP-AD----------------VSEIIVSPRNAQIAARLAERFPKVRIA-------KDNQ 56 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCC-CC----------------hheEEEECCCHHHHHHHHHHcCCceEe-------CCHH
Confidence 47999999999999999998876 20 125789999999999888876533321 2234
Q ss_pred HhhccccEEEecCCccccHHHHHHH-HHhCCeEEEee
Q 001559 655 KCISQVEIVISLLPASCHVMVANAC-IEFKKHLVTAS 690 (1053)
Q Consensus 655 ~~i~~~DvVI~~~p~~~~~~v~~ac-i~~g~~~vD~s 690 (1053)
++++++|+||-|+|+.....+.... +..++++++++
T Consensus 57 ~~~~~aDvVilav~p~~~~~vl~~l~~~~~~~vis~~ 93 (258)
T PRK06476 57 AVVDRSDVVFLAVRPQIAEEVLRALRFRPGQTVISVI 93 (258)
T ss_pred HHHHhCCEEEEEeCHHHHHHHHHHhccCCCCEEEEEC
Confidence 5567899999999975444544332 35678888876
|
|
| >PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0015 Score=75.64 Aligned_cols=129 Identities=17% Similarity=0.242 Sum_probs=88.1
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEE-EE-EECCHHHHHHHHhcCCCceEEEecCC--
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRV-LV-ASLYLKDAEEVIEGIPNAEAVQLDVS-- 648 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v-~v-~~r~~~~a~~l~~~~~~~~~~~~d~~-- 648 (1053)
+++|.|+| +|.+|+..+..+.+.++ ..+| .+ ++++.+++.+.++.+.---+...|-.
T Consensus 1 mk~VaILGsTGSIG~~tL~vi~~~p~------------------~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~ 62 (385)
T PRK05447 1 MKRITILGSTGSIGTQTLDVIRRNPD------------------RFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAA 62 (385)
T ss_pred CceEEEEcCChHHHHHHHHHHHhCcc------------------ccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHH
Confidence 47899999 89999999999877652 1233 33 48899999888887642112212211
Q ss_pred ----------------CHHHHHHhhc--cccEEEecCCccccHHHHHHHHHhCCeEEEeec--cChhHHHHHHHHHHcCC
Q 001559 649 ----------------DHKSLCKCIS--QVEIVISLLPASCHVMVANACIEFKKHLVTASY--IDDSMSKLDEKAKGAGI 708 (1053)
Q Consensus 649 ----------------d~~~l~~~i~--~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy--~~~~~~~L~~~Ak~~Gv 708 (1053)
..+.+.++++ ++|+||++++...+.....+|+++|+++....= ....-..+.+.|++.|+
T Consensus 63 ~~l~~~l~~~~~~v~~G~~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaLANKEslV~aG~~i~~~a~~~g~ 142 (385)
T PRK05447 63 KELKEALAAAGIEVLAGEEGLCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIALANKESLVCAGELVMDAAKKSGA 142 (385)
T ss_pred HHHHHhhccCCceEEEChhHHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEEEeCHHHHHhhHHHHHHHHHHcCC
Confidence 1334555554 479999999988787778889999999888641 11223456678899999
Q ss_pred eEEecCCCChhHHHH
Q 001559 709 TILGEMGLDPGIDHM 723 (1053)
Q Consensus 709 ~~l~g~G~dPGi~~m 723 (1053)
.+++ +|+.-+-+
T Consensus 143 ~i~P---VDSEh~ai 154 (385)
T PRK05447 143 QILP---VDSEHSAI 154 (385)
T ss_pred eEEE---ECHHHHHH
Confidence 9988 46644433
|
|
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00056 Score=78.82 Aligned_cols=108 Identities=9% Similarity=0.149 Sum_probs=80.0
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCC--ceEEEecCCCH
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPN--AEAVQLDVSDH 650 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~--~~~~~~d~~d~ 650 (1053)
...+++|||+|..|+..++.+..-.+. .+|.|++|++++++++++.+.. +++..+
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr~i------------------~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~----- 184 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALLGI------------------EEIRLYDIDPAATAKLARNLAGPGLRIVAC----- 184 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhCCc------------------eEEEEEeCCHHHHHHHHHHHHhcCCcEEEe-----
Confidence 457899999999999999888764423 4899999999999998877652 333322
Q ss_pred HHHHHhhccccEEEecCCcccc-HHHHHHHHHhCCeEEEeeccChhHHHHHHHH
Q 001559 651 KSLCKCISQVEIVISLLPASCH-VMVANACIEFKKHLVTASYIDDSMSKLDEKA 703 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~-~~v~~aci~~g~~~vD~sy~~~~~~~L~~~A 703 (1053)
+++.++++++|+|+.+||..-. +-+-...++.|+|+.-+....+.+++++...
T Consensus 185 ~~~~~av~~ADIIvtaT~S~~~~Pvl~~~~lkpG~hV~aIGs~~p~~~Eld~~~ 238 (346)
T PRK07589 185 RSVAEAVEGADIITTVTADKTNATILTDDMVEPGMHINAVGGDCPGKTELHPDI 238 (346)
T ss_pred CCHHHHHhcCCEEEEecCCCCCCceecHHHcCCCcEEEecCCCCCCcccCCHHH
Confidence 3477889999999999974332 2234468899999877765566677776554
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0014 Score=75.55 Aligned_cols=79 Identities=16% Similarity=0.158 Sum_probs=61.6
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHH-----HHhcCCCceEEEe
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEE-----VIEGIPNAEAVQL 645 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~-----l~~~~~~~~~~~~ 645 (1053)
.++++|+|.| +|++|+.+++.|++.| .+|.+..|+.++... +....++++++.+
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERG--------------------YTVKGTVRNPDDPKNTHLRELEGGKERLILCKA 67 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCc--------------------CEEEEEeCCchhhhHHHHHHhhCCCCcEEEEec
Confidence 4568899999 5999999999999987 378888887654321 1111124677889
Q ss_pred cCCCHHHHHHhhccccEEEecCCcc
Q 001559 646 DVSDHKSLCKCISQVEIVISLLPAS 670 (1053)
Q Consensus 646 d~~d~~~l~~~i~~~DvVI~~~p~~ 670 (1053)
|++|.+.+.++++++|+||++++..
T Consensus 68 Dl~d~~~~~~~~~~~d~Vih~A~~~ 92 (342)
T PLN02214 68 DLQDYEALKAAIDGCDGVFHTASPV 92 (342)
T ss_pred CcCChHHHHHHHhcCCEEEEecCCC
Confidence 9999999999999999999999653
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00095 Score=75.14 Aligned_cols=96 Identities=14% Similarity=0.085 Sum_probs=68.7
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHH-HHHHHhcCCCceEEEecCCCHH
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKD-AEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~-a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
++.||.|||+|.+|...+..+.+...+ .-+.+++++++. ..+.++.+. +... ..+.+
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~~~~v------------------elvAVvdid~es~gla~A~~~G-i~~~---~~~ie 60 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILRSEHL------------------EPGAMVGIDPESDGLARARRLG-VATS---AEGID 60 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhcCCCc------------------EEEEEEeCChhhHHHHHHHHcC-CCcc---cCCHH
Confidence 357899999999999988877765422 146689998764 334455442 2211 11334
Q ss_pred HHHHh--hccccEEEecCCccccHHHHHHHHHhCCeEEEee
Q 001559 652 SLCKC--ISQVEIVISLLPASCHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 652 ~l~~~--i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~s 690 (1053)
.|.+. ..+.|+|+.+||...|...+..++++|+|++|.+
T Consensus 61 ~LL~~~~~~dIDiVf~AT~a~~H~e~a~~a~eaGk~VID~s 101 (302)
T PRK08300 61 GLLAMPEFDDIDIVFDATSAGAHVRHAAKLREAGIRAIDLT 101 (302)
T ss_pred HHHhCcCCCCCCEEEECCCHHHHHHHHHHHHHcCCeEEECC
Confidence 44332 2579999999999999999999999999999997
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0016 Score=74.07 Aligned_cols=115 Identities=15% Similarity=0.151 Sum_probs=74.6
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
.++|+|||+|.+|..++..|.+.+. ..+|.+++|+.++++.+.+. . +... . ..++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~------------------~~~V~~~dr~~~~~~~a~~~-g-~~~~---~--~~~~ 60 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGL------------------AGEIVGADRSAETRARAREL-G-LGDR---V--TTSA 60 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCC------------------CcEEEEEECCHHHHHHHHhC-C-CCce---e--cCCH
Confidence 4689999999999999999988762 13799999998877765432 2 1100 1 1224
Q ss_pred HHhhccccEEEecCCccccHHHHHH---HHHhCCeEEEeeccChhHH-HHHHHHHHcCCeEEecC
Q 001559 654 CKCISQVEIVISLLPASCHVMVANA---CIEFKKHLVTASYIDDSMS-KLDEKAKGAGITILGEM 714 (1053)
Q Consensus 654 ~~~i~~~DvVI~~~p~~~~~~v~~a---ci~~g~~~vD~sy~~~~~~-~L~~~Ak~~Gv~~l~g~ 714 (1053)
.+.++++|+||.|+|......+... ++..+..++|++....... .+. .....++.++.+.
T Consensus 61 ~~~~~~aDvViiavp~~~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~-~~~~~~~~~v~~h 124 (307)
T PRK07502 61 AEAVKGADLVILCVPVGASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMA-PHLPEGVHFIPGH 124 (307)
T ss_pred HHHhcCCCEEEECCCHHHHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHH-HhCCCCCeEEeCC
Confidence 5567899999999998765444433 4566788888876543322 222 1122455666653
|
|
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00022 Score=69.10 Aligned_cols=108 Identities=23% Similarity=0.258 Sum_probs=66.0
Q ss_pred cCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC--HHHHHHHHhcCCCceEEEecCCCHHHHHHhhc
Q 001559 581 GAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY--LKDAEEVIEGIPNAEAVQLDVSDHKSLCKCIS 658 (1053)
Q Consensus 581 GaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~--~~~a~~l~~~~~~~~~~~~d~~d~~~l~~~i~ 658 (1053)
|+|.+|+.+++.|.+.... .++ .-+.|++|+ .... .....++.... .++.+++.
T Consensus 1 G~G~VG~~l~~~l~~~~~~----------~~~-----~v~~v~~~~~~~~~~--~~~~~~~~~~~-------~~~~~~~~ 56 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQER----------IDL-----EVVGVADRSMLISKD--WAASFPDEAFT-------TDLEELID 56 (117)
T ss_dssp --SHHHHHHHHHHHHTHHH----------CEE-----EEEEEEESSEEEETT--HHHHHTHSCEE-------SSHHHHHT
T ss_pred CCCHHHHHHHHHHHhCccc----------CCE-----EEEEEEECCchhhhh--hhhhccccccc-------CCHHHHhc
Confidence 8999999999999876410 000 146778888 1111 11111111111 22345555
Q ss_pred --cccEEEecCCccccHHHHHHHHHhCCeEEEeec--cC--hhHHHHHHHHHHcCCeEEe
Q 001559 659 --QVEIVISLLPASCHVMVANACIEFKKHLVTASY--ID--DSMSKLDEKAKGAGITILG 712 (1053)
Q Consensus 659 --~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy--~~--~~~~~L~~~Ak~~Gv~~l~ 712 (1053)
+.|+||+|++..........+++.|+|+|.++- .. ....+|.+.|++.|+.+.-
T Consensus 57 ~~~~dvvVE~t~~~~~~~~~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~~~ 116 (117)
T PF03447_consen 57 DPDIDVVVECTSSEAVAEYYEKALERGKHVVTANKGALADEALYEELREAARKNGVRIYY 116 (117)
T ss_dssp HTT-SEEEE-SSCHHHHHHHHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EEEE
T ss_pred CcCCCEEEECCCchHHHHHHHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEEEe
Confidence 799999998876666778899999999999973 22 4456888999999988763
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0007 Score=77.19 Aligned_cols=110 Identities=13% Similarity=0.086 Sum_probs=81.3
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCC--ceEEEecCCCH
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPN--AEAVQLDVSDH 650 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~--~~~~~~d~~d~ 650 (1053)
..++++|||+|..|+..++.+....+. .+|.|++|++++++++++...+ +.+..+
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v~~i------------------~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~----- 183 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNVTDC------------------RQLWVWGRSETALEEYRQYAQALGFAVNTT----- 183 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCCC------------------CEEEEECCCHHHHHHHHHHHHhcCCcEEEE-----
Confidence 467899999999999999998765433 4899999999999988876542 333322
Q ss_pred HHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeeccChhHHHHHHHHHHc
Q 001559 651 KSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGA 706 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~~~~~~L~~~Ak~~ 706 (1053)
++..++++++|+|+.||+... +-+-...++.|+|+.-+....+.+++++...-+.
T Consensus 184 ~~~~~av~~ADIV~taT~s~~-P~~~~~~l~~G~hi~~iGs~~p~~~Eld~~~l~~ 238 (315)
T PRK06823 184 LDAAEVAHAANLIVTTTPSRE-PLLQAEDIQPGTHITAVGADSPGKQELDAELVAR 238 (315)
T ss_pred CCHHHHhcCCCEEEEecCCCC-ceeCHHHcCCCcEEEecCCCCcccccCCHHHHhh
Confidence 346788899999999998542 3333457899999888876566777776554333
|
|
| >COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0011 Score=75.22 Aligned_cols=155 Identities=21% Similarity=0.175 Sum_probs=91.6
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCccccc-ccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQK-TCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~-~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
+..+|.|+|.|.+|+.+++.|.++.. |+ .+...+++ -+.|++|+....+. ...+++....-|.+...
T Consensus 2 ~~v~v~l~G~G~VG~~~~~il~~~~~-----~l~~~~g~~i~-----v~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 69 (333)
T COG0460 2 KTVKVGLLGLGTVGSGVLEILAEKQE-----ELRKRAGIEIR-----VVAVADRDGSLVRD--LDLLNAEVWTTDGALSL 69 (333)
T ss_pred ceEEEEEEccCchhHHHHHHHHHhHH-----HHHhhcCCceE-----EEEEEeccchhccc--ccccchhhheecccccc
Confidence 35689999999999999999987652 11 01111111 35567776544330 11111111111211110
Q ss_pred -HHHHhhccccEEEecCCcccc--H--HHHHHHHHhCCeEEEeec--cChhHHHHHHHHHHcCCeEEecCCCChhHHHHH
Q 001559 652 -SLCKCISQVEIVISLLPASCH--V--MVANACIEFKKHLVTASY--IDDSMSKLDEKAKGAGITILGEMGLDPGIDHMM 724 (1053)
Q Consensus 652 -~l~~~i~~~DvVI~~~p~~~~--~--~v~~aci~~g~~~vD~sy--~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~ml 724 (1053)
...-...++|+||+++|.... . .....++++|+|+|+..= ....-.+|.+.|+++|+.+.-++-+.-|+.-+-
T Consensus 70 ~~~~~~~~~~dvvve~~~~d~~~~~~~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~yEAtV~gGiPiI~ 149 (333)
T COG0460 70 GDEVLLDEDIDVVVELVGGDVEPAEPADLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKLLYEATVGGGIPIIK 149 (333)
T ss_pred cHhhhccccCCEEEecCcccCCchhhHHHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeEEEEeeeccCcchHH
Confidence 111233468999999987432 3 566789999999999862 334456888999999999998866555544332
Q ss_pred HHHHHHHhhhccCceEEEE
Q 001559 725 AMKMINHAHVRKGKIKSFT 743 (1053)
Q Consensus 725 a~~~i~~~~~~~~~v~sf~ 743 (1053)
+ +++.. .+++|.+|.
T Consensus 150 ~---lr~~l-~g~~I~~i~ 164 (333)
T COG0460 150 L---LRELL-AGDEILSIR 164 (333)
T ss_pred H---HHhhc-ccCceEEEE
Confidence 2 22222 256676665
|
|
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0009 Score=77.20 Aligned_cols=98 Identities=13% Similarity=0.044 Sum_probs=69.9
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC-Cc--------e-E-
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NA--------E-A- 642 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~--------~-~- 642 (1053)
+.||.|+|+|++|+.+++.+.+++++ .-+.+.+++++.+..++...+ .. . +
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d~------------------eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~ 62 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPDM------------------ELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFE 62 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCCc------------------EEEEEECCChHHHHHHHHhcCCCccccCcccccccc
Confidence 46899999999999999998876533 146667777766666655321 00 0 0
Q ss_pred -EEecCCCHHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeec
Q 001559 643 -VQLDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASY 691 (1053)
Q Consensus 643 -~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy 691 (1053)
..+.+. ..+.+++.++|+||+|+|...+......|+++|+.+|+-+.
T Consensus 63 ~~~i~V~--~~~~el~~~vDVVIdaT~~~~~~e~a~~~~~aGk~VI~~~~ 110 (341)
T PRK04207 63 EAGIPVA--GTIEDLLEKADIVVDATPGGVGAKNKELYEKAGVKAIFQGG 110 (341)
T ss_pred CCceEEc--CChhHhhccCCEEEECCCchhhHHHHHHHHHCCCEEEEcCC
Confidence 001111 22455667899999999999999999999999999999874
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00085 Score=77.44 Aligned_cols=79 Identities=13% Similarity=0.136 Sum_probs=65.5
Q ss_pred CCCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC---CCceEEEec
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI---PNAEAVQLD 646 (1053)
Q Consensus 571 ~~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~---~~~~~~~~d 646 (1053)
....++|+|.| +|++|+.++++|++.| .+|.+++|+.++.+.+...+ ++++.+.+|
T Consensus 7 ~~~~~~vLVtG~~GfIG~~l~~~L~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D 66 (353)
T PLN02896 7 ESATGTYCVTGATGYIGSWLVKLLLQRG--------------------YTVHATLRDPAKSLHLLSKWKEGDRLRLFRAD 66 (353)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCC--------------------CEEEEEeCChHHHHHHHHhhccCCeEEEEECC
Confidence 35678999999 7999999999999987 37888889887766655443 347788899
Q ss_pred CCCHHHHHHhhccccEEEecCCc
Q 001559 647 VSDHKSLCKCISQVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~~~DvVI~~~p~ 669 (1053)
++|.+.+.++++++|+||+++..
T Consensus 67 l~~~~~~~~~~~~~d~Vih~A~~ 89 (353)
T PLN02896 67 LQEEGSFDEAVKGCDGVFHVAAS 89 (353)
T ss_pred CCCHHHHHHHHcCCCEEEECCcc
Confidence 99999999999999999999864
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0011 Score=76.45 Aligned_cols=78 Identities=18% Similarity=0.132 Sum_probs=59.7
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHH----HHHHHhc-----CCCce
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKD----AEEVIEG-----IPNAE 641 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~----a~~l~~~-----~~~~~ 641 (1053)
.++++|+|.| +|++|+.++++|.+.+ .+|.+++|.... ...+... ..++.
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g--------------------~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLN--------------------QTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFI 72 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCC--------------------CEEEEEeCCCCcchhhhhhhhhccccccCCceE
Confidence 4578999999 6999999999999887 378888875332 1111111 12466
Q ss_pred EEEecCCCHHHHHHhhccccEEEecCCc
Q 001559 642 AVQLDVSDHKSLCKCISQVEIVISLLPA 669 (1053)
Q Consensus 642 ~~~~d~~d~~~l~~~i~~~DvVI~~~p~ 669 (1053)
.+.+|+.|.+.+.++++++|+||+++..
T Consensus 73 ~~~~Di~d~~~l~~~~~~~d~ViHlAa~ 100 (348)
T PRK15181 73 FIQGDIRKFTDCQKACKNVDYVLHQAAL 100 (348)
T ss_pred EEEccCCCHHHHHHHhhCCCEEEECccc
Confidence 7889999999999999999999999853
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00086 Score=76.21 Aligned_cols=77 Identities=23% Similarity=0.323 Sum_probs=64.9
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
+.+.|+|.| +|++|+++++.|++.| .+|.+++|+.++++++.+.+.++..+.+|++|.+
T Consensus 25 ~~k~vlITGasggIG~~~a~~L~~~G--------------------~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~ 84 (315)
T PRK06196 25 SGKTAIVTGGYSGLGLETTRALAQAG--------------------AHVIVPARRPDVAREALAGIDGVEVVMLDLADLE 84 (315)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHH
Confidence 457899999 6999999999999987 3789999999988887776666788999999998
Q ss_pred HHHHhhc-------cccEEEecCCc
Q 001559 652 SLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 652 ~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++.+++. ..|+||++++.
T Consensus 85 ~v~~~~~~~~~~~~~iD~li~nAg~ 109 (315)
T PRK06196 85 SVRAFAERFLDSGRRIDILINNAGV 109 (315)
T ss_pred HHHHHHHHHHhcCCCCCEEEECCCC
Confidence 8776653 47999999875
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00032 Score=80.34 Aligned_cols=95 Identities=14% Similarity=0.194 Sum_probs=69.7
Q ss_pred CCCCCeEEEEcC-chhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCC
Q 001559 571 TKGTSSVLIIGA-GRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSD 649 (1053)
Q Consensus 571 ~~~~~~VlIiGa-G~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d 649 (1053)
..++++|+|+|+ |.+|+.+++.|+....+ .++.+++|+.++++++...+.. .+
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv------------------~~lilv~R~~~rl~~La~el~~-----~~--- 205 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGV------------------AELLLVARQQERLQELQAELGG-----GK--- 205 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCC------------------CEEEEEcCCHHHHHHHHHHhcc-----cc---
Confidence 356789999997 99999999999754212 3789999999999988876542 12
Q ss_pred HHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeec
Q 001559 650 HKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASY 691 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy 691 (1053)
...+.+.+.++|+||+++.......+-..-++.+..++|+++
T Consensus 206 i~~l~~~l~~aDiVv~~ts~~~~~~I~~~~l~~~~~viDiAv 247 (340)
T PRK14982 206 ILSLEEALPEADIVVWVASMPKGVEIDPETLKKPCLMIDGGY 247 (340)
T ss_pred HHhHHHHHccCCEEEECCcCCcCCcCCHHHhCCCeEEEEecC
Confidence 234678889999999999653322222334567788999986
|
|
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0017 Score=72.88 Aligned_cols=109 Identities=17% Similarity=0.165 Sum_probs=63.8
Q ss_pred eEEEEcCchhhHHHHHHHHhCCCCCcccccccccc-cccCCCccEE-EEEECC-----HHHH----HHHHhcCCCceEEE
Q 001559 576 SVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMET-DFEWQNDIRV-LVASLY-----LKDA----EEVIEGIPNAEAVQ 644 (1053)
Q Consensus 576 ~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~-~~~~~~~~~v-~v~~r~-----~~~a----~~l~~~~~~~~~~~ 644 (1053)
+|+|+|+|++|..+|++|+..| +. ...+.| |.++.+|..- .+...+ ..|+ +++.+.+|.+++..
T Consensus 1 kVLIvGaGGLGs~vA~~La~aG-Vg----~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~ 75 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWG-VR----HITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATG 75 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CC----eEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEE
Confidence 5999999999999999999988 31 112222 2233333321 121111 1233 33334456554432
Q ss_pred ec--C----------------CCHHHHHHhhccccEEEecCCcccc-HHHHHHHHHhCCeEEEe
Q 001559 645 LD--V----------------SDHKSLCKCISQVEIVISLLPASCH-VMVANACIEFKKHLVTA 689 (1053)
Q Consensus 645 ~d--~----------------~d~~~l~~~i~~~DvVI~~~p~~~~-~~v~~aci~~g~~~vD~ 689 (1053)
.. + .+.+.+.++++++|+|++|+...-. .-+...|.+.++.+++.
T Consensus 76 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~a 139 (307)
T cd01486 76 IVLSIPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLSAAKNKLVINA 139 (307)
T ss_pred eeeeccccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCcEEEE
Confidence 22 1 2566788999999999999965432 33455677777766664
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00092 Score=74.65 Aligned_cols=94 Identities=15% Similarity=0.159 Sum_probs=67.7
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
++|.|||+|.+|.+++..|.+.+.+ ....|.+++|+.++++++.+.++++... .+..
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~----------------~~~~v~v~~r~~~~~~~~~~~~~g~~~~-------~~~~ 57 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAV----------------KPSQLTITNRTPAKAYHIKERYPGIHVA-------KTIE 57 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCC----------------CcceEEEECCCHHHHHHHHHHcCCeEEE-------CCHH
Confidence 4699999999999999999887621 0126899999999988887765443321 1233
Q ss_pred HhhccccEEEecCCccccHHHHHHH---HHhCCeEEEeec
Q 001559 655 KCISQVEIVISLLPASCHVMVANAC---IEFKKHLVTASY 691 (1053)
Q Consensus 655 ~~i~~~DvVI~~~p~~~~~~v~~ac---i~~g~~~vD~sy 691 (1053)
+.+.++|+||-|+|+.....+.+.. +..++.+++++-
T Consensus 58 ~~~~~aDiVilav~p~~~~~vl~~l~~~l~~~~~iis~~a 97 (273)
T PRK07680 58 EVISQSDLIFICVKPLDIYPLLQKLAPHLTDEHCLVSITS 97 (273)
T ss_pred HHHHhCCEEEEecCHHHHHHHHHHHHhhcCCCCEEEEECC
Confidence 5567899999999876655555443 345678888874
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0017 Score=77.08 Aligned_cols=95 Identities=22% Similarity=0.261 Sum_probs=70.2
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
...++|+|+|+|.+|+.++.+|...| + .+|++++|+.++++++++.++. ..+ +.+
T Consensus 178 l~~~~VlViGaG~iG~~~a~~L~~~G-~------------------~~V~v~~rs~~ra~~la~~~g~-~~i-----~~~ 232 (417)
T TIGR01035 178 LKGKKALLIGAGEMGELVAKHLLRKG-V------------------GKILIANRTYERAEDLAKELGG-EAV-----KFE 232 (417)
T ss_pred ccCCEEEEECChHHHHHHHHHHHHCC-C------------------CEEEEEeCCHHHHHHHHHHcCC-eEe-----eHH
Confidence 45688999999999999999998876 2 3799999999999988887653 222 235
Q ss_pred HHHHhhccccEEEecCCccc---cHHHHHHHHHh---CCeEEEeec
Q 001559 652 SLCKCISQVEIVISLLPASC---HVMVANACIEF---KKHLVTASY 691 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~~~---~~~v~~aci~~---g~~~vD~sy 691 (1053)
++.+.+.++|+||+||+..- .....+.+... ...++|++.
T Consensus 233 ~l~~~l~~aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~ 278 (417)
T TIGR01035 233 DLEEYLAEADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAV 278 (417)
T ss_pred HHHHHHhhCCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCC
Confidence 67788899999999997542 23334444332 236889973
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=97.30 E-value=9.1e-05 Score=84.42 Aligned_cols=112 Identities=18% Similarity=0.205 Sum_probs=70.7
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCC--ceEEEecCCCH
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPN--AEAVQLDVSDH 650 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~--~~~~~~d~~d~ 650 (1053)
...++.|||+|..|+..++.|....+. .+|.|++|+.++++++++.+.. +.+..+
T Consensus 127 ~~~~l~viGaG~QA~~~~~a~~~~~~i------------------~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~----- 183 (313)
T PF02423_consen 127 DARTLGVIGAGVQARWHLRALAAVRPI------------------KEVRVYSRSPERAEAFAARLRDLGVPVVAV----- 183 (313)
T ss_dssp T--EEEEE--SHHHHHHHHHHHHHS--------------------SEEEEE-SSHHHHHHHHHHHHCCCTCEEEE-----
T ss_pred CCceEEEECCCHHHHHHHHHHHHhCCc------------------eEEEEEccChhHHHHHHHhhccccccceec-----
Confidence 356899999999999999998765423 4899999999999999876543 334333
Q ss_pred HHHHHhhccccEEEecCCcccc-HHHHHHHHHhCCeEEEeeccChhHHHHHHHHHHcC
Q 001559 651 KSLCKCISQVEIVISLLPASCH-VMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAG 707 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~-~~v~~aci~~g~~~vD~sy~~~~~~~L~~~Ak~~G 707 (1053)
++++++++++|+|+.|||.... +-+....++.|+|+.-+....+.+++|+...-+.-
T Consensus 184 ~~~~~av~~aDii~taT~s~~~~P~~~~~~l~~g~hi~~iGs~~~~~~El~~~~~~~a 241 (313)
T PF02423_consen 184 DSAEEAVRGADIIVTATPSTTPAPVFDAEWLKPGTHINAIGSYTPGMRELDDELLKRA 241 (313)
T ss_dssp SSHHHHHTTSSEEEE----SSEEESB-GGGS-TT-EEEE-S-SSTTBESB-HHHHHCS
T ss_pred cchhhhcccCCEEEEccCCCCCCccccHHHcCCCcEEEEecCCCCchhhcCHHHhccC
Confidence 4467889999999999987552 33344578999999988766666666655444443
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0011 Score=76.06 Aligned_cols=117 Identities=15% Similarity=0.129 Sum_probs=76.0
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC------CceEEEecC
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP------NAEAVQLDV 647 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~------~~~~~~~d~ 647 (1053)
+++|.|||+|.+|.+++..|++.| .+|.+++|+.++++.+..... +... ...+
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G--------------------~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~-~~~~ 62 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKG--------------------VPVRLWARRPEFAAALAAERENREYLPGVAL-PAEL 62 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCC--------------------CeEEEEeCCHHHHHHHHHhCcccccCCCCcC-CCCe
Confidence 578999999999999999999887 379999999988887765321 1110 0001
Q ss_pred CCHHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeec-cChh---HHHHHHHHHH---cCCeEEe
Q 001559 648 SDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASY-IDDS---MSKLDEKAKG---AGITILG 712 (1053)
Q Consensus 648 ~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy-~~~~---~~~L~~~Ak~---~Gv~~l~ 712 (1053)
....++.+.++++|+||-++|......+. ..++.+..+++++- ..+. ...+.+...+ .++.++.
T Consensus 63 ~~~~~~~e~~~~aD~Vi~~v~~~~~~~v~-~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~ 133 (328)
T PRK14618 63 YPTADPEEALAGADFAVVAVPSKALRETL-AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLS 133 (328)
T ss_pred EEeCCHHHHHcCCCEEEEECchHHHHHHH-HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEE
Confidence 11124556678999999999987544443 33456778888764 3322 3445444444 5555444
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00061 Score=69.78 Aligned_cols=93 Identities=23% Similarity=0.318 Sum_probs=65.8
Q ss_pred eEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC------CCceEE-EecCC
Q 001559 576 SVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI------PNAEAV-QLDVS 648 (1053)
Q Consensus 576 ~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~------~~~~~~-~~d~~ 648 (1053)
||.|||+|.+|.++|..|++.+ .+|.++.|+.+.++.+.+.. ++.+.- .+.+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g--------------------~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~- 59 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG--------------------HEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA- 59 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT--------------------EEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-
T ss_pred CEEEECcCHHHHHHHHHHHHcC--------------------CEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-
Confidence 6999999999999999999987 48999999999888887543 221110 0111
Q ss_pred CHHHHHHhhccccEEEecCCccccHHHHHHH---HHhCCeEEEee
Q 001559 649 DHKSLCKCISQVEIVISLLPASCHVMVANAC---IEFKKHLVTAS 690 (1053)
Q Consensus 649 d~~~l~~~i~~~DvVI~~~p~~~~~~v~~ac---i~~g~~~vD~s 690 (1053)
..++.+.++++|+||-++|...+..+.+.. ++.++.++-++
T Consensus 60 -t~dl~~a~~~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~~~ 103 (157)
T PF01210_consen 60 -TTDLEEALEDADIIIIAVPSQAHREVLEQLAPYLKKGQIIISAT 103 (157)
T ss_dssp -ESSHHHHHTT-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred -ccCHHHHhCcccEEEecccHHHHHHHHHHHhhccCCCCEEEEec
Confidence 245778899999999999998887776654 45666666554
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00097 Score=73.80 Aligned_cols=77 Identities=23% Similarity=0.271 Sum_probs=64.0
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
+++++|.| +|++|+.+++.|++.| .+|.+.+|+.++++++.+.+.++..+.+|++|.++
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~ 64 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALG--------------------ARVAIGDLDEALAKETAAELGLVVGGPLDVTDPAS 64 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHhccceEEEccCCCHHH
Confidence 57899999 6999999999999987 37899999999988887766667888999999888
Q ss_pred HHHhhc-------cccEEEecCCcc
Q 001559 653 LCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 653 l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+.++++ ..|++|++++..
T Consensus 65 ~~~~~~~~~~~~~~id~li~~ag~~ 89 (273)
T PRK07825 65 FAAFLDAVEADLGPIDVLVNNAGVM 89 (273)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcC
Confidence 765544 469999998753
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0007 Score=70.22 Aligned_cols=76 Identities=20% Similarity=0.250 Sum_probs=60.0
Q ss_pred CCCCCeEEEEcCchh-hHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCC
Q 001559 571 TKGTSSVLIIGAGRV-CRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSD 649 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~v-g~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d 649 (1053)
+.+.++|+|+|+|.+ |..++.+|.+.+ ..|++++|+.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g--------------------~~V~v~~r~~---------------------- 78 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRN--------------------ATVTVCHSKT---------------------- 78 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCC--------------------CEEEEEECCc----------------------
Confidence 467899999999985 999999999887 3799999862
Q ss_pred HHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeec
Q 001559 650 HKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASY 691 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy 691 (1053)
+++.+.+.++|+||++++... .+-..-++.+..++|++.
T Consensus 79 -~~l~~~l~~aDiVIsat~~~~--ii~~~~~~~~~viIDla~ 117 (168)
T cd01080 79 -KNLKEHTKQADIVIVAVGKPG--LVKGDMVKPGAVVIDVGI 117 (168)
T ss_pred -hhHHHHHhhCCEEEEcCCCCc--eecHHHccCCeEEEEccC
Confidence 346678899999999998643 233345677888999975
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00048 Score=68.10 Aligned_cols=110 Identities=24% Similarity=0.156 Sum_probs=67.3
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
...+|.|||+|++|..++++|.+.| + .-+.|.+|+.+.+++++..++...+ .+
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag-~------------------~v~~v~srs~~sa~~a~~~~~~~~~--------~~ 61 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAG-H------------------EVVGVYSRSPASAERAAAFIGAGAI--------LD 61 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTT-S------------------EEEEESSCHH-HHHHHHC--TT-------------
T ss_pred CccEEEEECCCHHHHHHHHHHHHCC-C------------------eEEEEEeCCcccccccccccccccc--------cc
Confidence 4689999999999999999999887 3 2356778998888888877764332 23
Q ss_pred HHHhhccccEEEecCCccccHHHHHHH-----HHhCCeEEEeeccChhHHHHHHHHHHcCCeEE
Q 001559 653 LCKCISQVEIVISLLPASCHVMVANAC-----IEFKKHLVTASYIDDSMSKLDEKAKGAGITIL 711 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~~~~~v~~ac-----i~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~l 711 (1053)
+.+.+.++|+++-++|-..-..+++.. .+.|+.++-+|.-- .. ++.+-++++|+.+.
T Consensus 62 ~~~~~~~aDlv~iavpDdaI~~va~~La~~~~~~~g~iVvHtSGa~-~~-~vL~p~~~~Ga~~~ 123 (127)
T PF10727_consen 62 LEEILRDADLVFIAVPDDAIAEVAEQLAQYGAWRPGQIVVHTSGAL-GS-DVLAPARERGAIVA 123 (127)
T ss_dssp TTGGGCC-SEEEE-S-CCHHHHHHHHHHCC--S-TT-EEEES-SS---G-GGGHHHHHTT-EEE
T ss_pred cccccccCCEEEEEechHHHHHHHHHHHHhccCCCCcEEEECCCCC-hH-HhhhhHHHCCCeEE
Confidence 456788999999999987555555543 34688888888531 11 22346677777543
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0018 Score=78.96 Aligned_cols=114 Identities=19% Similarity=0.198 Sum_probs=70.2
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccc-cccCCCccE-EEEEECC------HHHH----HHHHhcCCC
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMET-DFEWQNDIR-VLVASLY------LKDA----EEVIEGIPN 639 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~-~~~~~~~~~-v~v~~r~------~~~a----~~l~~~~~~ 639 (1053)
.+..+|+|+|+|+.|.++|++|+..| +. ...++| |.++.+|.. ..+.... ..|+ +++.+-+|.
T Consensus 336 L~~~kVLIvGaGGLGs~VA~~La~~G-Vg----~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~ 410 (664)
T TIGR01381 336 YSQLKVLLLGAGTLGCNVARCLIGWG-VR----HITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPS 410 (664)
T ss_pred HhcCeEEEECCcHHHHHHHHHHHHcC-CC----eEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCC
Confidence 46789999999999999999999998 31 011222 223322322 2122110 1122 333444676
Q ss_pred ceEEEe--cC-------C---------CHHHHHHhhccccEEEecCCcccc-HHHHHHHHHhCCeEEEee
Q 001559 640 AEAVQL--DV-------S---------DHKSLCKCISQVEIVISLLPASCH-VMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 640 ~~~~~~--d~-------~---------d~~~l~~~i~~~DvVI~~~p~~~~-~~v~~aci~~g~~~vD~s 690 (1053)
+++... .+ + |.+.+.++++++|+|++|+...-. .-+...|...++.+|..+
T Consensus 411 v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR~L~n~~c~~~~kplI~aA 480 (664)
T TIGR01381 411 IQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREARWLPTVLCSRHKKIAISAA 480 (664)
T ss_pred cEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEE
Confidence 554322 21 1 225688899999999999976543 345678999999988764
|
This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. |
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0015 Score=71.56 Aligned_cols=92 Identities=16% Similarity=0.261 Sum_probs=64.5
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCcc-EEEEEEC-CHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDI-RVLVASL-YLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~-~v~v~~r-~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
.+||.|||+|.+|++++..|.+.+.. +. .+.+++| +.++++++.+.++ +... .
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~-----------------~~~~i~~~~~~~~~~~~~~~~~~~-~~~~-------~ 58 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKE-----------------YIEEIIVSNRSNVEKLDQLQARYN-VSTT-------T 58 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCC-----------------CcCeEEEECCCCHHHHHHHHHHcC-cEEe-------C
Confidence 47899999999999999999876511 12 3777887 5788888877653 2211 2
Q ss_pred HHHHhhccccEEEecCCccccHHHHHHHHH--hCCeEEEee
Q 001559 652 SLCKCISQVEIVISLLPASCHVMVANACIE--FKKHLVTAS 690 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~~~~~~v~~aci~--~g~~~vD~s 690 (1053)
+..++++++|+||.++|+..+..+.+.... .++.++.++
T Consensus 59 ~~~~~~~~~DiViiavp~~~~~~v~~~l~~~~~~~~vis~~ 99 (245)
T PRK07634 59 DWKQHVTSVDTIVLAMPPSAHEELLAELSPLLSNQLVVTVA 99 (245)
T ss_pred ChHHHHhcCCEEEEecCHHHHHHHHHHHHhhccCCEEEEEC
Confidence 234567889999999999888776654321 245566664
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0014 Score=72.55 Aligned_cols=75 Identities=19% Similarity=0.311 Sum_probs=62.7
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
+++++|.| +|++|+.+++.|++.| .+|.+.+|+.++++++... ++..+.+|++|.++
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G--------------------~~V~~~~r~~~~l~~~~~~--~~~~~~~Dv~~~~~ 60 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQG--------------------YTVYGAARRVDKMEDLASL--GVHPLSLDVTDEAS 60 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHhC--CCeEEEeeCCCHHH
Confidence 56899999 6999999999999887 3789999999888776543 47888999999988
Q ss_pred HHHhhc-------cccEEEecCCcc
Q 001559 653 LCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 653 l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+.++++ +.|+||++++..
T Consensus 61 ~~~~~~~~~~~~~~id~li~~ag~~ 85 (273)
T PRK06182 61 IKAAVDTIIAEEGRIDVLVNNAGYG 85 (273)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCcC
Confidence 887776 579999999754
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0013 Score=70.74 Aligned_cols=76 Identities=21% Similarity=0.278 Sum_probs=62.5
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC---CCceEEEecCCC
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI---PNAEAVQLDVSD 649 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~---~~~~~~~~d~~d 649 (1053)
+++|+|+| +|++|+.++++|++.| .+|.+++|+.++++++.+.+ .++..+.+|++|
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g--------------------~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~ 65 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEG--------------------YKVAITARDQKELEEAAAELNNKGNVLGLAADVRD 65 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCC--------------------CEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCC
Confidence 47899999 6999999999999886 37899999998877776554 457788899999
Q ss_pred HHHHHHhhc-------cccEEEecCCc
Q 001559 650 HKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 650 ~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
.+++.+.++ .+|+||+++..
T Consensus 66 ~~~~~~~~~~~~~~~~~~d~vi~~ag~ 92 (237)
T PRK07326 66 EADVQRAVDAIVAAFGGLDVLIANAGV 92 (237)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 988876665 58999999854
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0014 Score=87.69 Aligned_cols=110 Identities=15% Similarity=0.111 Sum_probs=84.1
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
..+|.+||.|.||.++|..|++.| ..|.++||++++++++.+. ++.. .++.
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G--------------------~~v~v~dr~~~~~~~l~~~--Ga~~-------~~s~ 54 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSG--------------------FKVQAFEISTPLMEKFCEL--GGHR-------CDSP 54 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCC--------------------CeEEEEcCCHHHHHHHHHc--CCee-------cCCH
Confidence 467999999999999999999987 3899999999999998874 2221 1345
Q ss_pred HHhhccccEEEecCCcccc-HHHH------HHHHHhCCeEEEeeccCh-hHHHHHHHHHHcC--CeEEe
Q 001559 654 CKCISQVEIVISLLPASCH-VMVA------NACIEFKKHLVTASYIDD-SMSKLDEKAKGAG--ITILG 712 (1053)
Q Consensus 654 ~~~i~~~DvVI~~~p~~~~-~~v~------~aci~~g~~~vD~sy~~~-~~~~L~~~Ak~~G--v~~l~ 712 (1053)
.++.+++|+||.|+|..-. ..+. ...++.|..++|+|.+++ .++++.+.++++| +.++.
T Consensus 55 ~e~a~~advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lD 123 (1378)
T PLN02858 55 AEAAKDAAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVD 123 (1378)
T ss_pred HHHHhcCCEEEEEcCChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEE
Confidence 6778899999999987643 2222 123467889999997655 4568888899999 66554
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00092 Score=70.94 Aligned_cols=91 Identities=19% Similarity=0.115 Sum_probs=65.7
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHH-HHHHhcCCCceEEEecCCCHHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDA-EEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a-~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
+|++.|+|+|.+|..+++.|++.+ .+|.|.+|+.+++ +.+++.+. ..+ ...+
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag--------------------~eV~igs~r~~~~~~a~a~~l~-~~i------~~~~ 53 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAG--------------------HEVIIGSSRGPKALAAAAAALG-PLI------TGGS 53 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCC--------------------CeEEEecCCChhHHHHHHHhhc-ccc------ccCC
Confidence 578999999999999999999987 3899996665544 44444332 111 1123
Q ss_pred HHHhhccccEEEecCCccccHHHHHHHH--HhCCeEEEeec
Q 001559 653 LCKCISQVEIVISLLPASCHVMVANACI--EFKKHLVTASY 691 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~~~~~v~~aci--~~g~~~vD~sy 691 (1053)
..+..+.+|+|+-++|+...+.++.+.. -.|+.+||.+-
T Consensus 54 ~~dA~~~aDVVvLAVP~~a~~~v~~~l~~~~~~KIvID~tn 94 (211)
T COG2085 54 NEDAAALADVVVLAVPFEAIPDVLAELRDALGGKIVIDATN 94 (211)
T ss_pred hHHHHhcCCEEEEeccHHHHHhHHHHHHHHhCCeEEEecCC
Confidence 4567778999999999988777765543 23799999863
|
|
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0022 Score=81.64 Aligned_cols=114 Identities=15% Similarity=0.068 Sum_probs=73.6
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccc-cCCCccEEEE-EEC---CHHHHH----HHHhcCCCceE
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDF-EWQNDIRVLV-ASL---YLKDAE----EVIEGIPNAEA 642 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~-~~~~~~~v~v-~~r---~~~~a~----~l~~~~~~~~~ 642 (1053)
.+..+|+|+|+|++|..++.+|+..| +. ..++.|++ ++.+|+.-.+ ++. -..|++ ++.+-.|.+++
T Consensus 330 L~~srVlVvGlGGlGs~ia~~LAraG-VG----~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I 404 (989)
T PRK14852 330 LLRSRVAIAGLGGVGGIHLMTLARTG-IG----NFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDI 404 (989)
T ss_pred HhcCcEEEECCcHHHHHHHHHHHHcC-CC----eEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeE
Confidence 56789999999999999999999998 31 12233322 3333332211 111 122333 33344566555
Q ss_pred EEecC-CCHHHHHHhhccccEEEecCCccc---cHHHHHHHHHhCCeEEEee
Q 001559 643 VQLDV-SDHKSLCKCISQVEIVISLLPASC---HVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 643 ~~~d~-~d~~~l~~~i~~~DvVI~~~p~~~---~~~v~~aci~~g~~~vD~s 690 (1053)
...+. -+.+.+.++++++|+||+|+.... ...+...|.+.|+.+|..+
T Consensus 405 ~~~~~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag 456 (989)
T PRK14852 405 RSFPEGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAG 456 (989)
T ss_pred EEEecCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEee
Confidence 44422 256778899999999999997632 2456778999999999764
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0014 Score=72.01 Aligned_cols=76 Identities=17% Similarity=0.215 Sum_probs=63.0
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC---CceEEEecCCC
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP---NAEAVQLDVSD 649 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~---~~~~~~~d~~d 649 (1053)
+++|+|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+.++ ++..+.+|++|
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 61 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQG--------------------ATLGLVARRTDALQAFAARLPKAARVSVYAADVRD 61 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCC
Confidence 46799999 7999999999999987 379999999988887776554 46788999999
Q ss_pred HHHHHHhhcc-------ccEEEecCCc
Q 001559 650 HKSLCKCISQ-------VEIVISLLPA 669 (1053)
Q Consensus 650 ~~~l~~~i~~-------~DvVI~~~p~ 669 (1053)
.+++.+++++ .|++|++++.
T Consensus 62 ~~~i~~~~~~~~~~~g~id~lv~~ag~ 88 (257)
T PRK07024 62 ADALAAAAADFIAAHGLPDVVIANAGI 88 (257)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCc
Confidence 9888776654 6999999864
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0013 Score=74.07 Aligned_cols=78 Identities=26% Similarity=0.284 Sum_probs=63.8
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
..++|+|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+.+ ..+..+.+|+
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~G--------------------~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl 98 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARRG--------------------ATVVAVARREDLLDAVADRITRAGGDAMAVPCDL 98 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccC
Confidence 457899999 6999999999999987 38999999998887776543 2356788999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCcc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+|.+++.++++ ..|+||++++..
T Consensus 99 ~d~~~v~~~~~~~~~~~g~id~li~~AG~~ 128 (293)
T PRK05866 99 SDLDAVDALVADVEKRIGGVDILINNAGRS 128 (293)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 99988877766 679999998754
|
|
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00062 Score=77.62 Aligned_cols=119 Identities=18% Similarity=0.193 Sum_probs=88.2
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
....+.|||+|..++..++++...-+. .+|.|.+|+++.+++++..+.+--.. ++...++
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v~~~------------------~~I~i~~r~~~~~e~~a~~l~~~~~~--~v~a~~s 188 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAVRDI------------------REIRVYSRDPEAAEAFAARLRKRGGE--AVGAADS 188 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhhCCc------------------cEEEEEcCCHHHHHHHHHHHHhhcCc--cceeccC
Confidence 357899999999999999999876533 38999999999999998665421110 2233456
Q ss_pred HHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeeccChhHHHHHHHHHHcC-CeEEe
Q 001559 653 LCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAG-ITILG 712 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~~~~~~L~~~Ak~~G-v~~l~ 712 (1053)
++++++++|+|+.|||... +-+...-++.|+|+.-+.-..|.+.+|+.+.-.+- ..++.
T Consensus 189 ~~~av~~aDiIvt~T~s~~-Pil~~~~l~~G~hI~aiGad~p~k~Eld~e~l~ra~~vvvD 248 (330)
T COG2423 189 AEEAVEGADIVVTATPSTE-PVLKAEWLKPGTHINAIGADAPGKRELDPEVLARADRVVVD 248 (330)
T ss_pred HHHHhhcCCEEEEecCCCC-CeecHhhcCCCcEEEecCCCCcccccCCHHHHHhcCeEEEc
Confidence 7899999999999998754 44455678999998888766777778876655444 55554
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0016 Score=70.76 Aligned_cols=74 Identities=24% Similarity=0.227 Sum_probs=61.7
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
++++|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+...++..+.+|++|.+++
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 61 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQG--------------------WQVIACGRNQSVLDELHTQSANIFTLAFDVTDHPGT 61 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCC--------------------CEEEEEECCHHHHHHHHHhcCCCeEEEeeCCCHHHH
Confidence 5689999 7999999999999987 379999999998888877656678899999999998
Q ss_pred HHhhcc----ccEEEecCC
Q 001559 654 CKCISQ----VEIVISLLP 668 (1053)
Q Consensus 654 ~~~i~~----~DvVI~~~p 668 (1053)
.+++++ .|++|+.++
T Consensus 62 ~~~~~~~~~~~d~~i~~ag 80 (240)
T PRK06101 62 KAALSQLPFIPELWIFNAG 80 (240)
T ss_pred HHHHHhcccCCCEEEEcCc
Confidence 888775 367776654
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0014 Score=72.27 Aligned_cols=77 Identities=18% Similarity=0.348 Sum_probs=63.9
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC-CceEEEecCCCH
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NAEAVQLDVSDH 650 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~~~~~~d~~d~ 650 (1053)
++++++|.| +|++|+.+++.|++.| .+|.+.+|+.++++++.+.+. ++.++++|++|.
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~ 64 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAG--------------------ARVAIVDIDADNGAAVAASLGERARFIATDITDD 64 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCH
Confidence 457899999 6999999999999987 389999999888888776654 467889999999
Q ss_pred HHHHHhhc-------cccEEEecCCc
Q 001559 651 KSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 651 ~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+++.++++ ..|++|++++.
T Consensus 65 ~~~~~~~~~~~~~~g~id~lv~~ag~ 90 (261)
T PRK08265 65 AAIERAVATVVARFGRVDILVNLACT 90 (261)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 88877665 36999999864
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0016 Score=70.97 Aligned_cols=75 Identities=15% Similarity=0.232 Sum_probs=62.1
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC-CceEEEecCCCHHH
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NAEAVQLDVSDHKS 652 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~~~~~~d~~d~~~ 652 (1053)
|+|+|.| +|++|+.+++.|++.| .+|.+.+|+.++++++...++ ++..+.+|++|.++
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~ 60 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQG--------------------HKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAA 60 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHhccceEEEEecCCCHHH
Confidence 5799999 6999999999999887 379999999998887766543 46788899999888
Q ss_pred HHHhhc-------cccEEEecCCc
Q 001559 653 LCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 653 l~~~i~-------~~DvVI~~~p~ 669 (1053)
+.+.++ +.|+||++++.
T Consensus 61 i~~~~~~~~~~~~~id~vi~~ag~ 84 (248)
T PRK10538 61 IEEMLASLPAEWRNIDVLVNNAGL 84 (248)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCc
Confidence 776554 58999999865
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0029 Score=67.40 Aligned_cols=100 Identities=14% Similarity=0.092 Sum_probs=67.7
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC-------------------HHHHH-
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY-------------------LKDAE- 631 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~-------------------~~~a~- 631 (1053)
.+.++|+|+|+|++|..+++.|+..| + -+++++|.+ ..|++
T Consensus 19 L~~s~VlIiG~gglG~evak~La~~G-V------------------g~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a 79 (197)
T cd01492 19 LRSARILLIGLKGLGAEIAKNLVLSG-I------------------GSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEA 79 (197)
T ss_pred HHhCcEEEEcCCHHHHHHHHHHHHcC-C------------------CEEEEEECCcccHhhCCCCccccHHHcCchHHHH
Confidence 45789999999999999999999998 3 245555543 11333
Q ss_pred ---HHHhcCCCceEEEecCCCHHHHHHhhccccEEEecCCcc-ccHHHHHHHHHhCCeEEEee
Q 001559 632 ---EVIEGIPNAEAVQLDVSDHKSLCKCISQVEIVISLLPAS-CHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 632 ---~l~~~~~~~~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~-~~~~v~~aci~~g~~~vD~s 690 (1053)
++.+..|.+++...+..-.+...+.++++|+||++++.. ....+.+.|.+.+++++...
T Consensus 80 ~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~ 142 (197)
T cd01492 80 SLERLRALNPRVKVSVDTDDISEKPEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYATG 142 (197)
T ss_pred HHHHHHHHCCCCEEEEEecCccccHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 344455665543332211123456788999999998542 33567788999999988875
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0016 Score=70.29 Aligned_cols=74 Identities=20% Similarity=0.279 Sum_probs=61.5
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
|+++|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+.+ ++..+.+|++|.+++
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g--------------------~~v~~~~r~~~~~~~~~~~~-~~~~~~~D~~~~~~v 59 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDG--------------------HKVTLVGARRDDLEVAAKEL-DVDAIVCDNTDPASL 59 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHhc-cCcEEecCCCCHHHH
Confidence 4699998 6999999999999887 37899999999888877665 367788999999888
Q ss_pred HHhhc----cccEEEecCCc
Q 001559 654 CKCIS----QVEIVISLLPA 669 (1053)
Q Consensus 654 ~~~i~----~~DvVI~~~p~ 669 (1053)
.++++ ..|++||+++.
T Consensus 60 ~~~~~~~~~~id~lv~~ag~ 79 (223)
T PRK05884 60 EEARGLFPHHLDTIVNVPAP 79 (223)
T ss_pred HHHHHHHhhcCcEEEECCCc
Confidence 77665 47999998763
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0024 Score=71.33 Aligned_cols=90 Identities=21% Similarity=0.252 Sum_probs=68.1
Q ss_pred eEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHH
Q 001559 576 SVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 576 ~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
+|+|+| +|.+|+.++++|.+.+ .+|.+..|+.+++. .++++.+.+|..|.+.|.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g--------------------~~V~~~~R~~~~~~-----~~~~~~~~~d~~d~~~l~ 55 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAAS--------------------VPFLVASRSSSSSA-----GPNEKHVKFDWLDEDTWD 55 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCC--------------------CcEEEEeCCCcccc-----CCCCccccccCCCHHHHH
Confidence 489999 6999999999999887 37999999987543 235677788999999999
Q ss_pred Hhh------cc-ccEEEecCCcccc-----HHHHHHHHHhCC-eEEEee
Q 001559 655 KCI------SQ-VEIVISLLPASCH-----VMVANACIEFKK-HLVTAS 690 (1053)
Q Consensus 655 ~~i------~~-~DvVI~~~p~~~~-----~~v~~aci~~g~-~~vD~s 690 (1053)
+++ ++ +|.|+.+.|.... ..++++|.++|+ ++|-+|
T Consensus 56 ~a~~~~~~~~g~~d~v~~~~~~~~~~~~~~~~~i~aa~~~gv~~~V~~S 104 (285)
T TIGR03649 56 NPFSSDDGMEPEISAVYLVAPPIPDLAPPMIKFIDFARSKGVRRFVLLS 104 (285)
T ss_pred HHHhcccCcCCceeEEEEeCCCCCChhHHHHHHHHHHHHcCCCEEEEee
Confidence 888 56 9999988875321 245566677774 555554
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0015 Score=69.64 Aligned_cols=75 Identities=16% Similarity=0.314 Sum_probs=63.3
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
+++++|.| +|++|+.+++.|++. + +|.+.+|+.++++++.+..++++++.+|++|.++
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~--~-------------------~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~ 61 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT--H-------------------TLLLGGRPAERLDELAAELPGATPFPVDLTDPEA 61 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh--C-------------------CEEEEeCCHHHHHHHHHHhccceEEecCCCCHHH
Confidence 46899999 699999999999876 3 6899999988877776656668889999999999
Q ss_pred HHHhhc---cccEEEecCCc
Q 001559 653 LCKCIS---QVEIVISLLPA 669 (1053)
Q Consensus 653 l~~~i~---~~DvVI~~~p~ 669 (1053)
+.++++ +.|+||++++.
T Consensus 62 ~~~~~~~~~~id~vi~~ag~ 81 (227)
T PRK08219 62 IAAAVEQLGRLDVLVHNAGV 81 (227)
T ss_pred HHHHHHhcCCCCEEEECCCc
Confidence 988877 48999999864
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.002 Score=69.85 Aligned_cols=81 Identities=23% Similarity=0.292 Sum_probs=67.5
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC--CceEEEecCCCH
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP--NAEAVQLDVSDH 650 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~--~~~~~~~d~~d~ 650 (1053)
.|-++|-| +.++|.++|+.|++.| .+|.++.|+.+++++++..++ .+.++.+|++|.
T Consensus 6 ~kv~lITGASSGiG~A~A~~l~~~G--------------------~~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~ 65 (246)
T COG4221 6 GKVALITGASSGIGEATARALAEAG--------------------AKVVLAARREERLEALADEIGAGAALALALDVTDR 65 (246)
T ss_pred CcEEEEecCcchHHHHHHHHHHHCC--------------------CeEEEEeccHHHHHHHHHhhccCceEEEeeccCCH
Confidence 45677779 6899999999999998 489999999999999999998 478899999999
Q ss_pred HHHHHhhc-------cccEEEecCCccccHH
Q 001559 651 KSLCKCIS-------QVEIVISLLPASCHVM 674 (1053)
Q Consensus 651 ~~l~~~i~-------~~DvVI~~~p~~~~~~ 674 (1053)
+++.++++ +.|++||-++.....+
T Consensus 66 ~~~~~~i~~~~~~~g~iDiLvNNAGl~~g~~ 96 (246)
T COG4221 66 AAVEAAIEALPEEFGRIDILVNNAGLALGDP 96 (246)
T ss_pred HHHHHHHHHHHHhhCcccEEEecCCCCcCCh
Confidence 88655544 5899999998655433
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0015 Score=70.72 Aligned_cols=78 Identities=17% Similarity=0.234 Sum_probs=62.6
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
++++++|.| +|++|+.+++.|+++| .+|.+++|+.++.+++.+.+ .++..+.+|+
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~ 64 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAG--------------------WDLALVARSQDALEALAAELRSTGVKAAAYSIDL 64 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccC
Confidence 467899999 6999999999999987 37999999988777665432 2467788999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCcc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+|.+++.++++ ..|+||++++..
T Consensus 65 ~~~~~~~~~~~~~~~~~~~id~lv~~ag~~ 94 (241)
T PRK07454 65 SNPEAIAPGIAELLEQFGCPDVLINNAGMA 94 (241)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCcc
Confidence 99888776655 379999998753
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0017 Score=72.09 Aligned_cols=77 Identities=16% Similarity=0.239 Sum_probs=63.3
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC---CceEEEecCC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP---NAEAVQLDVS 648 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~---~~~~~~~d~~ 648 (1053)
++++++|.| +|++|+++++.|++.| .+|.+++|+.+..+++.+.+. ++..+.+|++
T Consensus 17 ~~k~~lItGas~gIG~~la~~l~~~G--------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 76 (280)
T PLN02253 17 LGKVALVTGGATGIGESIVRLFHKHG--------------------AKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVT 76 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcC--------------------CEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecC
Confidence 457899998 7999999999999987 378999998877777665542 4678899999
Q ss_pred CHHHHHHhhc-------cccEEEecCCc
Q 001559 649 DHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 649 d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
|.+++.+++. ..|+||++++.
T Consensus 77 d~~~~~~~~~~~~~~~g~id~li~~Ag~ 104 (280)
T PLN02253 77 VEDDVSRAVDFTVDKFGTLDIMVNNAGL 104 (280)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 9988887766 57999999864
|
|
| >KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0013 Score=73.48 Aligned_cols=116 Identities=22% Similarity=0.292 Sum_probs=70.4
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEEC----CHHHHHHHH----hcCCCceE
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASL----YLKDAEEVI----EGIPNAEA 642 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r----~~~~a~~l~----~~~~~~~~ 642 (1053)
..+...|+|+|+|+.|.+++.||+..| +. .+--+--|.+|.+|.+-.|+-- ...+|+..+ ...+.+++
T Consensus 63 ~Lk~s~VLVVGaGGLGcPa~~YLaaaG-vG---~lGiVD~DvVe~sNlhRQVlh~ea~vg~~Ka~sA~~~lr~lNs~v~v 138 (427)
T KOG2017|consen 63 SLKNSSVLVVGAGGLGCPAAQYLAAAG-VG---RLGIVDYDVVELSNLHRQVLHTEARVGMHKAESAAAFLRRLNSHVEV 138 (427)
T ss_pred ccCCccEEEEccCCCCCHHHHHHHHcC-CC---eecccccceeehhhHHHHHhhhhhhhhhHHHHHHHHHHHhcCCCcee
Confidence 456788999999999999999999887 31 0000001112222222111100 012333222 22344554
Q ss_pred EEecC-CCHHHHHHhhccccEEEecCCcc-ccHHHHHHHHHhCCeEEEee
Q 001559 643 VQLDV-SDHKSLCKCISQVEIVISLLPAS-CHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 643 ~~~d~-~d~~~l~~~i~~~DvVI~~~p~~-~~~~v~~aci~~g~~~vD~s 690 (1053)
..-.. .+...+-++++++|+|.+||... ....+...|.-.|+.+|..|
T Consensus 139 ~~y~~~L~~sNa~~Ii~~YdvVlDCTDN~~TRYLisD~CVlLgkpLVSgS 188 (427)
T KOG2017|consen 139 QTYNEFLSSSNAFDIIKQYDVVLDCTDNVPTRYLISDVCVLLGKPLVSGS 188 (427)
T ss_pred eechhhccchhHHHHhhccceEEEcCCCccchhhhhhHHHHcCCcccccc
Confidence 33322 25677789999999999999643 44677889999999999875
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0017 Score=71.11 Aligned_cols=79 Identities=22% Similarity=0.289 Sum_probs=64.4
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCC--ceEEEecCC
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPN--AEAVQLDVS 648 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~--~~~~~~d~~ 648 (1053)
.+.++++|.| .|++|+.+++.|+++| .+|.+++|+.+..+++.+..++ +..+.+|++
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~ 68 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAG--------------------ARVHVCDVSEAALAATAARLPGAKVTATVADVA 68 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHhcCceEEEEccCC
Confidence 4568999999 6999999999999987 3799999998888777766554 477889999
Q ss_pred CHHHHHHhhc-------cccEEEecCCcc
Q 001559 649 DHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 649 d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
|.+++.++++ ++|+||++++..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 97 (264)
T PRK12829 69 DPAQVERVFDTAVERFGGLDVLVNNAGIA 97 (264)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 9988776654 579999998643
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0039 Score=66.50 Aligned_cols=114 Identities=17% Similarity=0.190 Sum_probs=68.5
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccc-cCCCccE-EEEEEC-----CHHHHH----HHHhcCCCc
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDF-EWQNDIR-VLVASL-----YLKDAE----EVIEGIPNA 640 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~-~~~~~~~-v~v~~r-----~~~~a~----~l~~~~~~~ 640 (1053)
.+..+|+|+|+|++|..+++.|+..| +. .-.++|+. ++.++.. -..... -..|++ ++.+..|.+
T Consensus 17 L~~s~VlviG~gglGsevak~L~~~G-Vg----~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v 91 (198)
T cd01485 17 LRSAKVLIIGAGALGAEIAKNLVLAG-ID----SITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNV 91 (198)
T ss_pred HhhCcEEEECCCHHHHHHHHHHHHcC-CC----EEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCC
Confidence 45789999999999999999999988 31 01111111 2222221 111111 011333 344445666
Q ss_pred eEEEec--CC-CHHHHHHhhccccEEEecCCcc-ccHHHHHHHHHhCCeEEEee
Q 001559 641 EAVQLD--VS-DHKSLCKCISQVEIVISLLPAS-CHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 641 ~~~~~d--~~-d~~~l~~~i~~~DvVI~~~p~~-~~~~v~~aci~~g~~~vD~s 690 (1053)
++...+ .. ..+...+.++++|+||+|+... ....+.+.|.+.+..++..+
T Consensus 92 ~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~ 145 (198)
T cd01485 92 KLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFISCA 145 (198)
T ss_pred EEEEEecccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 554443 22 1345567788999999998543 23456788999999988875
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0029 Score=75.43 Aligned_cols=112 Identities=20% Similarity=0.249 Sum_probs=77.3
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
|+|+|+| +|.+|..++..|.+.| .+|.+++|+.+++++++..+. +.. ..++
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G--------------------~~V~v~~r~~~~~~~~a~~~g-v~~-------~~~~ 52 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKG--------------------FEVIVTGRDPKKGKEVAKELG-VEY-------ANDN 52 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCC--------------------CEEEEEECChHHHHHHHHHcC-Cee-------ccCH
Confidence 5799998 8999999999999877 379999999888777666543 221 1234
Q ss_pred HHhhccccEEEecCCccccHHHHHH---HHHhCCeEEEeeccChhH-HHHHHHHHHcCCeEEecCC
Q 001559 654 CKCISQVEIVISLLPASCHVMVANA---CIEFKKHLVTASYIDDSM-SKLDEKAKGAGITILGEMG 715 (1053)
Q Consensus 654 ~~~i~~~DvVI~~~p~~~~~~v~~a---ci~~g~~~vD~sy~~~~~-~~L~~~Ak~~Gv~~l~g~G 715 (1053)
.+.++++|+||.|+|......+... .+..++.++|++-..... ..+. +....|+.++.+.-
T Consensus 53 ~e~~~~aDvVIlavp~~~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~-~~~~~~~~~V~~HP 117 (437)
T PRK08655 53 IDAAKDADIVIISVPINVTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAME-EYAPEGVEILPTHP 117 (437)
T ss_pred HHHhccCCEEEEecCHHHHHHHHHHHHhhCCCCCEEEEcccccHHHHHHHH-HhcCCCCEEEEcCC
Confidence 5667899999999998654444433 345788899998654333 3333 22334667776543
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0012 Score=73.67 Aligned_cols=78 Identities=17% Similarity=0.244 Sum_probs=62.7
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
++++++|.| +|++|+.+++.|++.| .+|.+++|+.+.++++.+.+ .++..+.+|+
T Consensus 5 ~~k~vlVtGasggIG~~la~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~ 64 (287)
T PRK06194 5 AGKVAVITGAASGFGLAFARIGAALG--------------------MKLVLADVQQDALDRAVAELRAQGAEVLGVRTDV 64 (287)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCC--------------------CEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCC
Confidence 357899999 7999999999999987 37899999987776665443 2356688999
Q ss_pred CCHHHHHHhhcc-------ccEEEecCCcc
Q 001559 648 SDHKSLCKCISQ-------VEIVISLLPAS 670 (1053)
Q Consensus 648 ~d~~~l~~~i~~-------~DvVI~~~p~~ 670 (1053)
+|.+++.+++++ .|+||++++..
T Consensus 65 ~d~~~~~~~~~~~~~~~g~id~vi~~Ag~~ 94 (287)
T PRK06194 65 SDAAQVEALADAALERFGAVHLLFNNAGVG 94 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 999888877764 69999998753
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0013 Score=71.22 Aligned_cols=77 Identities=26% Similarity=0.301 Sum_probs=63.3
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC---CceEEEecCC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP---NAEAVQLDVS 648 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~---~~~~~~~d~~ 648 (1053)
+.++++|+| +|++|+.+++.|++.| .+|.+++|+.++.+++...+. ++..+.+|++
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~ 63 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEG--------------------ARVVVTDRNEEAAERVAAEILAGGRAIAVAADVS 63 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 457899999 6999999999999887 379999999988777665542 3668899999
Q ss_pred CHHHHHHhhcc-------ccEEEecCCc
Q 001559 649 DHKSLCKCISQ-------VEIVISLLPA 669 (1053)
Q Consensus 649 d~~~l~~~i~~-------~DvVI~~~p~ 669 (1053)
|.+++..++++ .|+||++++.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 91 (251)
T PRK07231 64 DEADVEAAVAAALERFGSVDILVNNAGT 91 (251)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 99988877654 5999999865
|
|
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0026 Score=79.36 Aligned_cols=113 Identities=14% Similarity=0.035 Sum_probs=72.9
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCccccccccccc-ccCCCccEEEE-EEC---CHHHHHHH----HhcCCCceE
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETD-FEWQNDIRVLV-ASL---YLKDAEEV----IEGIPNAEA 642 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~-~~~~~~~~v~v-~~r---~~~~a~~l----~~~~~~~~~ 642 (1053)
.+..+|+|+|+|++|..++.+|++.| +. . ..+.|+ .++.+|+.-.+ +.. -..|++.+ .+-.|.+++
T Consensus 41 L~~~~VlIvG~GGlGs~va~~Lar~G-VG--~--l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I 115 (679)
T PRK14851 41 LAEAKVAIPGMGGVGGVHLITMVRTG-IG--R--FHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEI 115 (679)
T ss_pred HhcCeEEEECcCHHHHHHHHHHHHhC-CC--e--EEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeE
Confidence 56789999999999999999999998 31 1 123332 23333332211 111 12244333 334565544
Q ss_pred EE--ecCCCHHHHHHhhccccEEEecCCcc-c--cHHHHHHHHHhCCeEEEee
Q 001559 643 VQ--LDVSDHKSLCKCISQVEIVISLLPAS-C--HVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 643 ~~--~d~~d~~~l~~~i~~~DvVI~~~p~~-~--~~~v~~aci~~g~~~vD~s 690 (1053)
.. ..+ +.+++.++++++|+||+|+... + ...+...|.+.++.+|+..
T Consensus 116 ~~~~~~i-~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g 167 (679)
T PRK14851 116 TPFPAGI-NADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAG 167 (679)
T ss_pred EEEecCC-ChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEee
Confidence 33 334 5667889999999999999753 2 2457788999999999864
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0024 Score=79.90 Aligned_cols=114 Identities=14% Similarity=0.091 Sum_probs=74.9
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccc-cCCCccEEEEEE---CCHHHHHH----HHhcCCCceEE
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDF-EWQNDIRVLVAS---LYLKDAEE----VIEGIPNAEAV 643 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~-~~~~~~~v~v~~---r~~~~a~~----l~~~~~~~~~~ 643 (1053)
.+..+|+|+|+| +|.+++.+|++.|.+. ...++|.+ ++.+|++-.++. ....|++. +.+-.|.+++.
T Consensus 105 L~~~~V~IvG~G-lGs~~a~~LaraGvvG----~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~ 179 (722)
T PRK07877 105 LGRLRIGVVGLS-VGHAIAHTLAAEGLCG----ELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVE 179 (722)
T ss_pred HhcCCEEEEEec-HHHHHHHHHHHccCCC----eEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEE
Confidence 567899999998 9999999999887211 12333333 444444332221 12234433 33345655554
Q ss_pred EecCC-CHHHHHHhhccccEEEecCCccc-cHHHHHHHHHhCCeEEEee
Q 001559 644 QLDVS-DHKSLCKCISQVEIVISLLPASC-HVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 644 ~~d~~-d~~~l~~~i~~~DvVI~~~p~~~-~~~v~~aci~~g~~~vD~s 690 (1053)
..+.. +.+++.++++++|+||+|+...- ...+.++|.+.|+.+|..+
T Consensus 180 ~~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~ 228 (722)
T PRK07877 180 VFTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIPVLMAT 228 (722)
T ss_pred EEeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 44432 57889999999999999998643 3567789999999988765
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0016 Score=71.12 Aligned_cols=78 Identities=21% Similarity=0.258 Sum_probs=63.3
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
+.+.++|.| +|++|+++++.|++.| .+|.+++|+.++++++.+.+ .++..+.+|+
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~ 67 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAG--------------------AQVAIAARHLDALEKLADEIGTSGGKVVPVCCDV 67 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--------------------CEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 457899999 6999999999999987 37899999988888776543 2466788999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCcc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+|.+++.++++ ..|++|++++..
T Consensus 68 ~~~~~~~~~~~~~~~~~g~id~lv~~ag~~ 97 (253)
T PRK05867 68 SQHQQVTSMLDQVTAELGGIDIAVCNAGII 97 (253)
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 99888776654 579999998653
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0017 Score=71.41 Aligned_cols=77 Identities=18% Similarity=0.186 Sum_probs=62.7
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC-CceEEEecCCCH
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NAEAVQLDVSDH 650 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~~~~~~d~~d~ 650 (1053)
+.++++|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+..+ ++..+.+|++|.
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G--------------------~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~ 63 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRFVAEG--------------------ARVAVLDKSAAGLQELEAAHGDAVVGVEGDVRSL 63 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHhhcCCceEEEEeccCCH
Confidence 357899999 6999999999999987 378999999988888776543 467788999998
Q ss_pred HHHHHhhc-------cccEEEecCCc
Q 001559 651 KSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 651 ~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+++.++++ ..|++|++++.
T Consensus 64 ~~~~~~~~~~~~~~g~id~li~~Ag~ 89 (262)
T TIGR03325 64 DDHKEAVARCVAAFGKIDCLIPNAGI 89 (262)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 77766554 46999999864
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0018 Score=73.68 Aligned_cols=77 Identities=23% Similarity=0.346 Sum_probs=63.4
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
.+++|+|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+.+ .++.++.+|+
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G--------------------~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl 64 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRG--------------------WHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDL 64 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHhhccCCceEEEEecC
Confidence 457899999 7999999999999987 37899999998888776654 2467788999
Q ss_pred CCHHHHHHhhcc-------ccEEEecCCc
Q 001559 648 SDHKSLCKCISQ-------VEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~~-------~DvVI~~~p~ 669 (1053)
+|.+++.+++++ .|+|||+++.
T Consensus 65 ~~~~~v~~~~~~~~~~~~~iD~li~nAg~ 93 (322)
T PRK07453 65 GDLDSVRRFVDDFRALGKPLDALVCNAAV 93 (322)
T ss_pred CCHHHHHHHHHHHHHhCCCccEEEECCcc
Confidence 999888776653 7999999874
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0018 Score=73.25 Aligned_cols=98 Identities=22% Similarity=0.214 Sum_probs=74.8
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHH--HHhcCC----CceEEEe
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEE--VIEGIP----NAEAVQL 645 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~--l~~~~~----~~~~~~~ 645 (1053)
.+++|+|-| +|++|+.+++.|.++| ..|.-.-|++++-+. .+..++ +.+.+..
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rG--------------------Y~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~a 64 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRG--------------------YTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKA 64 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCC--------------------CEEEEEEcCcchhhhHHHHHhcccCcccceEEec
Confidence 468899999 6999999999999998 378888898876433 233443 4678889
Q ss_pred cCCCHHHHHHhhccccEEEecCCc-ccc----------------HHHHHHHHHhC--CeEEEee
Q 001559 646 DVSDHKSLCKCISQVEIVISLLPA-SCH----------------VMVANACIEFK--KHLVTAS 690 (1053)
Q Consensus 646 d~~d~~~l~~~i~~~DvVI~~~p~-~~~----------------~~v~~aci~~g--~~~vD~s 690 (1053)
|+.|.+++.+.+++||.|++++.+ .+. ..|.++|.+.. +.+|-.|
T Consensus 65 DL~d~~sf~~ai~gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TS 128 (327)
T KOG1502|consen 65 DLLDEGSFDKAIDGCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYTS 128 (327)
T ss_pred cccccchHHHHHhCCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEec
Confidence 999999999999999999999843 221 13567888877 4455443
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0016 Score=74.27 Aligned_cols=97 Identities=16% Similarity=0.208 Sum_probs=65.3
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceE---E--EecCC
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEA---V--QLDVS 648 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~---~--~~d~~ 648 (1053)
|++|.|||+|.+|.+++..|++.+ .+|.+++|+.++++++......... . ...+.
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNG--------------------HDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLR 60 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--------------------CEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeE
Confidence 468999999999999999999887 3799999999888887764211000 0 00011
Q ss_pred CHHHHHHhhccccEEEecCCccccHHHHHH---HHHhCCeEEEee
Q 001559 649 DHKSLCKCISQVEIVISLLPASCHVMVANA---CIEFKKHLVTAS 690 (1053)
Q Consensus 649 d~~~l~~~i~~~DvVI~~~p~~~~~~v~~a---ci~~g~~~vD~s 690 (1053)
...++.+.++++|+||-|+|......+... .+..++.+++++
T Consensus 61 ~~~~~~~~~~~~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ 105 (325)
T PRK00094 61 ATTDLAEALADADLILVAVPSQALREVLKQLKPLLPPDAPIVWAT 105 (325)
T ss_pred EeCCHHHHHhCCCEEEEeCCHHHHHHHHHHHHhhcCCCCEEEEEe
Confidence 112345667899999999997543333332 234567778775
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0019 Score=71.07 Aligned_cols=77 Identities=16% Similarity=0.157 Sum_probs=63.9
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC-CceEEEecCCCH
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NAEAVQLDVSDH 650 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~~~~~~d~~d~ 650 (1053)
+.++++|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+.++ ++..+++|++|.
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~ 64 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEG--------------------ARVAVLERSAEKLASLRQRFGDHVLVVEGDVTSY 64 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCH
Confidence 457899999 6999999999999987 378999999998888877665 367888999998
Q ss_pred HHHHHhhc-------cccEEEecCCc
Q 001559 651 KSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 651 ~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+++.++++ ..|++|++++.
T Consensus 65 ~~~~~~~~~~~~~~g~id~li~~ag~ 90 (263)
T PRK06200 65 ADNQRAVDQTVDAFGKLDCFVGNAGI 90 (263)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 87776654 46999999875
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.002 Score=70.56 Aligned_cols=80 Identities=19% Similarity=0.266 Sum_probs=63.3
Q ss_pred CCCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC-CceEEEecCC
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NAEAVQLDVS 648 (1053)
Q Consensus 571 ~~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~~~~~~d~~ 648 (1053)
..++++|+|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+... ++.++.+|++
T Consensus 7 ~~~~k~vlItG~sg~IG~~~a~~l~~~g--------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 66 (255)
T PRK05717 7 GHNGRVALVTGAARGIGLGIAAWLIAEG--------------------WQVVLADLDRERGSKVAKALGENAWFIAMDVA 66 (255)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHHcC--------------------CEEEEEcCCHHHHHHHHHHcCCceEEEEccCC
Confidence 34568899999 7999999999999987 378889999888777765543 4678899999
Q ss_pred CHHHHHHhhc-------cccEEEecCCcc
Q 001559 649 DHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 649 d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
|.+++.+++. ..|+||++++..
T Consensus 67 ~~~~~~~~~~~~~~~~g~id~li~~ag~~ 95 (255)
T PRK05717 67 DEAQVAAGVAEVLGQFGRLDALVCNAAIA 95 (255)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 9887755443 369999998653
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0022 Score=71.14 Aligned_cols=76 Identities=20% Similarity=0.226 Sum_probs=62.8
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC-CceEEEecCCCHHH
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NAEAVQLDVSDHKS 652 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~~~~~~d~~d~~~ 652 (1053)
++++|.| +|++|+.+++.|++.| .+|.+.+|+.++.+++.+..+ ++.++.+|++|.++
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 62 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARG--------------------DRVAATVRRPDALDDLKARYGDRLWVLQLDVTDSAA 62 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHhccCceEEEEccCCCHHH
Confidence 5799999 7999999999999987 378999999988887766544 57788999999988
Q ss_pred HHHhhc-------cccEEEecCCcc
Q 001559 653 LCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 653 l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+.++++ ..|+||++++..
T Consensus 63 ~~~~~~~~~~~~~~id~vi~~ag~~ 87 (276)
T PRK06482 63 VRAVVDRAFAALGRIDVVVSNAGYG 87 (276)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCC
Confidence 876654 379999998754
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0018 Score=70.54 Aligned_cols=76 Identities=21% Similarity=0.337 Sum_probs=60.8
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----C--CceEEEe
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----P--NAEAVQL 645 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~--~~~~~~~ 645 (1053)
++++|+|.| +|++|+.+++.|++.| .+|.+.+|+.++++++.+.+ + .+.++.+
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g--------------------~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~ 62 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAG--------------------GIVIAADIDKEALNELLESLGKEFKSKKLSLVEL 62 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--------------------CEEEEEecChHHHHHHHHHHHhhcCCCceeEEEe
Confidence 357899999 6999999999999987 37888999988887765543 1 2445689
Q ss_pred cCCCHHHHHHhhcc-------ccEEEecCC
Q 001559 646 DVSDHKSLCKCISQ-------VEIVISLLP 668 (1053)
Q Consensus 646 d~~d~~~l~~~i~~-------~DvVI~~~p 668 (1053)
|++|.+++.+++++ .|+||+++.
T Consensus 63 Dl~d~~~~~~~~~~~~~~~~~id~vi~~A~ 92 (256)
T PRK09186 63 DITDQESLEEFLSKSAEKYGKIDGAVNCAY 92 (256)
T ss_pred cCCCHHHHHHHHHHHHHHcCCccEEEECCc
Confidence 99999888777764 699999984
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0024 Score=71.04 Aligned_cols=77 Identities=19% Similarity=0.203 Sum_probs=63.5
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC-CceEEEecCCCHH
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NAEAVQLDVSDHK 651 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~~~~~~d~~d~~ 651 (1053)
+++|+|.| +|++|+.+++.|++.| .+|.+++|+.++++.+.+..+ ++..+.+|++|.+
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G--------------------~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~ 63 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAG--------------------HRVVGTVRSEAARADFEALHPDRALARLLDVTDFD 63 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCc--------------------CEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHH
Confidence 46799999 6999999999999987 379999999988887766543 4677889999998
Q ss_pred HHHHhhc-------cccEEEecCCcc
Q 001559 652 SLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 652 ~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
++.++++ ..|+||++++..
T Consensus 64 ~~~~~~~~~~~~~~~~d~vv~~ag~~ 89 (277)
T PRK06180 64 AIDAVVADAEATFGPIDVLVNNAGYG 89 (277)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 8877766 479999998753
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0017 Score=70.93 Aligned_cols=79 Identities=22% Similarity=0.289 Sum_probs=63.0
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC----CceEEEec
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP----NAEAVQLD 646 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~----~~~~~~~d 646 (1053)
.++++|+|.| +|++|+.+++.|++.| .+|.+.+|+.++.+++.+.+. ++..+.+|
T Consensus 8 ~~~k~vlItGa~g~iG~~ia~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D 67 (255)
T PRK07523 8 LTGRRALVTGSSQGIGYALAEGLAQAG--------------------AEVILNGRDPAKLAAAAESLKGQGLSAHALAFD 67 (255)
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHcC--------------------CEEEEEeCCHHHHHHHHHHHHhcCceEEEEEcc
Confidence 3467899999 6999999999999987 378999999887776655432 36678889
Q ss_pred CCCHHHHHHhhcc-------ccEEEecCCcc
Q 001559 647 VSDHKSLCKCISQ-------VEIVISLLPAS 670 (1053)
Q Consensus 647 ~~d~~~l~~~i~~-------~DvVI~~~p~~ 670 (1053)
++|.+++.+++++ .|+||++++..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~d~li~~ag~~ 98 (255)
T PRK07523 68 VTDHDAVRAAIDAFEAEIGPIDILVNNAGMQ 98 (255)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 9999888777654 69999998653
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0022 Score=70.44 Aligned_cols=75 Identities=20% Similarity=0.248 Sum_probs=61.1
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC---CCceEEEecCCCH
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI---PNAEAVQLDVSDH 650 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~---~~~~~~~~d~~d~ 650 (1053)
|+++|.| +|++|+.+++.|++.| .+|.+.+|+.++.+++.+.+ .++..+.+|++|.
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~ 60 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKG--------------------ARVVISSRNEENLEKALKELKEYGEVYAVKADLSDK 60 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCH
Confidence 5799999 6999999999999987 37999999988777665543 3467789999998
Q ss_pred HHHHHhhc-------cccEEEecCCc
Q 001559 651 KSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 651 ~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+++.++++ ..|+||++++.
T Consensus 61 ~~~~~~~~~~~~~~g~id~li~naG~ 86 (259)
T PRK08340 61 DDLKNLVKEAWELLGGIDALVWNAGN 86 (259)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 88876664 47999999864
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0012 Score=69.08 Aligned_cols=90 Identities=30% Similarity=0.243 Sum_probs=60.8
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
....++|.|+|+|.+|+.+|+.|...| .+|.+++|+.......... .+. .
T Consensus 33 ~l~g~tvgIiG~G~IG~~vA~~l~~fG--------------------~~V~~~d~~~~~~~~~~~~--~~~--------~ 82 (178)
T PF02826_consen 33 ELRGKTVGIIGYGRIGRAVARRLKAFG--------------------MRVIGYDRSPKPEEGADEF--GVE--------Y 82 (178)
T ss_dssp -STTSEEEEESTSHHHHHHHHHHHHTT---------------------EEEEEESSCHHHHHHHHT--TEE--------E
T ss_pred ccCCCEEEEEEEcCCcCeEeeeeecCC--------------------ceeEEecccCChhhhcccc--cce--------e
Confidence 467899999999999999999999887 4899999997765422221 111 2
Q ss_pred HHHHHhhccccEEEecCCcccc-----HHHHHHHHHhCCeEEEee
Q 001559 651 KSLCKCISQVEIVISLLPASCH-----VMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~-----~~v~~aci~~g~~~vD~s 690 (1053)
.++.++++++|+|++++|..-. ..-..+.++.|..+|.++
T Consensus 83 ~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~a 127 (178)
T PF02826_consen 83 VSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVA 127 (178)
T ss_dssp SSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESS
T ss_pred eehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEecc
Confidence 3578899999999999996421 112233445566666655
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0026 Score=79.91 Aligned_cols=77 Identities=22% Similarity=0.264 Sum_probs=59.4
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
.++++|+|.| +|++|+.+++.|.+.++ .+|.+++|.......+.. .++++.+.+|++|.
T Consensus 313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g-------------------~~V~~l~r~~~~~~~~~~-~~~~~~~~gDl~d~ 372 (660)
T PRK08125 313 KRRTRVLILGVNGFIGNHLTERLLRDDN-------------------YEVYGLDIGSDAISRFLG-HPRFHFVEGDISIH 372 (660)
T ss_pred hcCCEEEEECCCchHHHHHHHHHHhCCC-------------------cEEEEEeCCchhhhhhcC-CCceEEEeccccCc
Confidence 5678999999 79999999999997642 388889987654433322 24578888999876
Q ss_pred HH-HHHhhccccEEEecCC
Q 001559 651 KS-LCKCISQVEIVISLLP 668 (1053)
Q Consensus 651 ~~-l~~~i~~~DvVI~~~p 668 (1053)
.. +.++++++|+||+++.
T Consensus 373 ~~~l~~~l~~~D~ViHlAa 391 (660)
T PRK08125 373 SEWIEYHIKKCDVVLPLVA 391 (660)
T ss_pred HHHHHHHhcCCCEEEECcc
Confidence 55 5678889999999875
|
|
| >PRK06813 homoserine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0028 Score=73.03 Aligned_cols=136 Identities=14% Similarity=0.011 Sum_probs=77.9
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHH-------HHHhcCCCce-EEEec
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAE-------EVIEGIPNAE-AVQLD 646 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~-------~l~~~~~~~~-~~~~d 646 (1053)
.+|.|+|.|.||+.+++.|.++.. .+..+++.++. -+.|++|+..... ++.+.-.... .....
T Consensus 3 i~I~liG~G~VG~~~~~~L~~~~~----~l~~~~g~~l~-----v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~ 73 (346)
T PRK06813 3 IKVVLSGYGTVGREFIKLLNEKYL----YINETYGIDLV-----VSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYI 73 (346)
T ss_pred eEEEEEecChhHHHHHHHHHHhHH----HHHHhcCCcEE-----EEEEEecchhhccccCCChhhhhhccccccchhhhh
Confidence 689999999999999999976541 11122222222 2556676543221 1111000000 00000
Q ss_pred CCCHHHHHHhhccccEEEecCCccc-----cHHHHHHHHHhCCeEEEee--ccChhHHHHHHHHHHcCCeEEecCCCChh
Q 001559 647 VSDHKSLCKCISQVEIVISLLPASC-----HVMVANACIEFKKHLVTAS--YIDDSMSKLDEKAKGAGITILGEMGLDPG 719 (1053)
Q Consensus 647 ~~d~~~l~~~i~~~DvVI~~~p~~~-----~~~v~~aci~~g~~~vD~s--y~~~~~~~L~~~Ak~~Gv~~l~g~G~dPG 719 (1053)
..+..++...-.+.||||+|||..+ .......+++.|+|+|+.. -......+|.+.|++.|+.+..++-+.-|
T Consensus 74 ~~~~~~~~~~~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~~~yEasVggG 153 (346)
T PRK06813 74 EHHPEERATDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIVAISKGALVTNWREINEAAKIANVRIRYSGATAAA 153 (346)
T ss_pred ccChHHHhcCCCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCeEEEeeeeeec
Confidence 0011111100015799999998543 2356688999999999986 23345578888999999999977644434
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0021 Score=71.46 Aligned_cols=75 Identities=23% Similarity=0.272 Sum_probs=61.0
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
+++|+|.| +|++|+++++.|++.| .+|.+++|+.++++++.+. ++..+.+|++|.++
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G--------------------~~Vi~~~r~~~~~~~l~~~--~~~~~~~Dl~d~~~ 61 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDG--------------------WRVFATCRKEEDVAALEAE--GLEAFQLDYAEPES 61 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHC--CceEEEccCCCHHH
Confidence 46799999 5999999999999887 3899999999888877653 47788999999887
Q ss_pred HHHhhc--------cccEEEecCCcc
Q 001559 653 LCKCIS--------QVEIVISLLPAS 670 (1053)
Q Consensus 653 l~~~i~--------~~DvVI~~~p~~ 670 (1053)
+.++++ ..|+||++++..
T Consensus 62 ~~~~~~~~~~~~~g~id~li~~Ag~~ 87 (277)
T PRK05993 62 IAALVAQVLELSGGRLDALFNNGAYG 87 (277)
T ss_pred HHHHHHHHHHHcCCCccEEEECCCcC
Confidence 766554 369999998653
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0025 Score=85.37 Aligned_cols=112 Identities=14% Similarity=0.159 Sum_probs=83.9
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
+..++|.+||.|.||.+++..|++.| .+|.++||+.++++++.+.. +.. ..
T Consensus 322 ~~~~~IGfIGlG~MG~~mA~~L~~~G--------------------~~V~v~dr~~~~~~~l~~~G--a~~-------~~ 372 (1378)
T PLN02858 322 KPVKRIGFIGLGAMGFGMASHLLKSN--------------------FSVCGYDVYKPTLVRFENAG--GLA-------GN 372 (1378)
T ss_pred cCCCeEEEECchHHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHcC--Cee-------cC
Confidence 34588999999999999999999887 38999999999998877642 111 12
Q ss_pred HHHHhhccccEEEecCCcccc-HHHH------HHHHHhCCeEEEeeccChh-HHHHHHHHHH--cCCeEEe
Q 001559 652 SLCKCISQVEIVISLLPASCH-VMVA------NACIEFKKHLVTASYIDDS-MSKLDEKAKG--AGITILG 712 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~~~~-~~v~------~aci~~g~~~vD~sy~~~~-~~~L~~~Ak~--~Gv~~l~ 712 (1053)
+..++++++|+||.|+|.... ..+. ...+..|..+||+|.+++. ++++.+.+++ +|+.++.
T Consensus 373 s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lD 443 (1378)
T PLN02858 373 SPAEVAKDVDVLVIMVANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVD 443 (1378)
T ss_pred CHHHHHhcCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEE
Confidence 345778899999999995432 2232 1234678999999976654 5678888888 8888765
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0023 Score=69.47 Aligned_cols=77 Identities=25% Similarity=0.299 Sum_probs=62.4
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC---CCceEEEecCC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI---PNAEAVQLDVS 648 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~---~~~~~~~~d~~ 648 (1053)
+.++++|.| +|++|+.+++.|++.| .+|.+.+|+.+++++..+.+ .++..+.+|++
T Consensus 4 ~~k~~lItG~sg~iG~~la~~l~~~G--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~ 63 (252)
T PRK06138 4 AGRVAIVTGAGSGIGRATAKLFAREG--------------------ARVVVADRDAEAAERVAAAIAAGGRAFARQGDVG 63 (252)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCC--------------------CeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCC
Confidence 457899999 6999999999999987 37889999988776665543 23678889999
Q ss_pred CHHHHHHhhc-------cccEEEecCCc
Q 001559 649 DHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 649 d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
|.+++.++++ ..|+||++++.
T Consensus 64 ~~~~~~~~~~~i~~~~~~id~vi~~ag~ 91 (252)
T PRK06138 64 SAEAVEALVDFVAARWGRLDVLVNNAGF 91 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 9988877665 57999999875
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.004 Score=72.02 Aligned_cols=113 Identities=12% Similarity=0.035 Sum_probs=62.6
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccc-cccCCCccEEEE-E-ECC---H--HHHHHHHhcC----CC
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMET-DFEWQNDIRVLV-A-SLY---L--KDAEEVIEGI----PN 639 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~-~~~~~~~~~v~v-~-~r~---~--~~a~~l~~~~----~~ 639 (1053)
.+..+|+|+|+|++|+.++..|++.| +. ...+.| |.++..|+.-.+ + ..+ . .|++.+.+.+ ++
T Consensus 174 L~~~~VaIVG~GG~GS~Va~~LAR~G-Vg----eI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~ 248 (393)
T PRK06153 174 LEGQRIAIIGLGGTGSYILDLVAKTP-VR----EIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRG 248 (393)
T ss_pred HhhCcEEEEcCCccHHHHHHHHHHcC-CC----EEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCe
Confidence 45789999999999999999999998 31 011111 223333332222 1 111 1 3444443322 23
Q ss_pred ceEEEecCCCHHHHHHhhccccEEEecCCcccc-HHHHHHHHHhCCeEEEeec
Q 001559 640 AEAVQLDVSDHKSLCKCISQVEIVISLLPASCH-VMVANACIEFKKHLVTASY 691 (1053)
Q Consensus 640 ~~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~-~~v~~aci~~g~~~vD~sy 691 (1053)
+..+...+ +.+.+. .+.++|+||.|+..... ..+.+.|.+.+..+||+..
T Consensus 249 I~~~~~~I-~~~n~~-~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~ 299 (393)
T PRK06153 249 IVPHPEYI-DEDNVD-ELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGM 299 (393)
T ss_pred EEEEeecC-CHHHHH-HhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeee
Confidence 44433333 444443 56788888888875433 3344556666666666543
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0047 Score=73.74 Aligned_cols=86 Identities=16% Similarity=0.195 Sum_probs=68.9
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
|+|+|+|+|.+|+.+++.|.+.+ .+|.+++++.++++++.+.. +++++..|.++...+.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g--------------------~~v~vid~~~~~~~~~~~~~-~~~~~~gd~~~~~~l~ 59 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGEN--------------------NDVTVIDTDEERLRRLQDRL-DVRTVVGNGSSPDVLR 59 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--------------------CcEEEEECCHHHHHHHHhhc-CEEEEEeCCCCHHHHH
Confidence 57999999999999999998876 37899999999988876533 4678889999988898
Q ss_pred Hh-hccccEEEecCCcccc-HHHHHHHHH
Q 001559 655 KC-ISQVEIVISLLPASCH-VMVANACIE 681 (1053)
Q Consensus 655 ~~-i~~~DvVI~~~p~~~~-~~v~~aci~ 681 (1053)
++ +.++|.||.+++.... ..+...|.+
T Consensus 60 ~~~~~~a~~vi~~~~~~~~n~~~~~~~r~ 88 (453)
T PRK09496 60 EAGAEDADLLIAVTDSDETNMVACQIAKS 88 (453)
T ss_pred HcCCCcCCEEEEecCChHHHHHHHHHHHH
Confidence 77 8999999999986433 233344444
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0018 Score=70.79 Aligned_cols=77 Identities=22% Similarity=0.243 Sum_probs=62.2
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
..++|+|.| +|++|+.+++.|++.| .+|.+++|+.++.+++.+.+ .++..+.+|+
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~ 63 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAG--------------------ADVVLAARTAERLDEVAAEIDDLGRRALAVPTDI 63 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcC--------------------CEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCC
Confidence 357899999 6999999999999987 37999999988877766543 2467889999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+|.+++.++++ ..|+||+++..
T Consensus 64 ~~~~~~~~~~~~~~~~~g~~d~vi~~ag~ 92 (258)
T PRK07890 64 TDEDQCANLVALALERFGRVDALVNNAFR 92 (258)
T ss_pred CCHHHHHHHHHHHHHHcCCccEEEECCcc
Confidence 99888776654 46999999854
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0023 Score=65.55 Aligned_cols=95 Identities=19% Similarity=0.154 Sum_probs=60.7
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
....++++|+|+|.+|+.+|+.|...| .+|+|++.++-++-+... .++++
T Consensus 20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~G--------------------a~V~V~e~DPi~alqA~~--dGf~v-------- 69 (162)
T PF00670_consen 20 MLAGKRVVVIGYGKVGKGIARALRGLG--------------------ARVTVTEIDPIRALQAAM--DGFEV-------- 69 (162)
T ss_dssp --TTSEEEEE--SHHHHHHHHHHHHTT---------------------EEEEE-SSHHHHHHHHH--TT-EE--------
T ss_pred eeCCCEEEEeCCCcccHHHHHHHhhCC--------------------CEEEEEECChHHHHHhhh--cCcEe--------
Confidence 456789999999999999999999887 489999999877644332 22333
Q ss_pred HHHHHhhccccEEEecCCcccc-HHHHHHHHHhCCeEEEeeccChh
Q 001559 651 KSLCKCISQVEIVISLLPASCH-VMVANACIEFKKHLVTASYIDDS 695 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~-~~v~~aci~~g~~~vD~sy~~~~ 695 (1053)
..+.++++.+|++|++|+..-- ..-....++.|+.+.++...+.+
T Consensus 70 ~~~~~a~~~adi~vtaTG~~~vi~~e~~~~mkdgail~n~Gh~d~E 115 (162)
T PF00670_consen 70 MTLEEALRDADIFVTATGNKDVITGEHFRQMKDGAILANAGHFDVE 115 (162)
T ss_dssp E-HHHHTTT-SEEEE-SSSSSSB-HHHHHHS-TTEEEEESSSSTTS
T ss_pred cCHHHHHhhCCEEEECCCCccccCHHHHHHhcCCeEEeccCcCcee
Confidence 2467888999999999986421 11223457778777777654433
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0023 Score=69.49 Aligned_cols=76 Identities=22% Similarity=0.360 Sum_probs=60.9
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC-----CCceEEEecC
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI-----PNAEAVQLDV 647 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~-----~~~~~~~~d~ 647 (1053)
+++|+|.| +|++|+.+++.|++.| ..|.+++|+.++.+++.+.+ .++.++.+|+
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G--------------------~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl 60 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAG--------------------ARLYLAARDVERLERLADDLRARGAVAVSTHELDI 60 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcC--------------------CEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 46899999 7999999999999887 37999999988776655432 3577889999
Q ss_pred CCHHHHHHhhcc----ccEEEecCCc
Q 001559 648 SDHKSLCKCISQ----VEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~~----~DvVI~~~p~ 669 (1053)
+|.+++.+++.+ .|+||++++.
T Consensus 61 ~~~~~~~~~~~~~~~~~d~vv~~ag~ 86 (243)
T PRK07102 61 LDTASHAAFLDSLPALPDIVLIAVGT 86 (243)
T ss_pred CChHHHHHHHHHHhhcCCEEEECCcC
Confidence 998887766653 5999998864
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0064 Score=64.96 Aligned_cols=26 Identities=31% Similarity=0.281 Sum_probs=24.1
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCC
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFG 597 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g 597 (1053)
.+.++|+|+|+|++|+.++.+|++.|
T Consensus 19 L~~~~V~IvG~GglGs~ia~~La~~G 44 (200)
T TIGR02354 19 LEQATVAICGLGGLGSNVAINLARAG 44 (200)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcC
Confidence 45789999999999999999999998
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0025 Score=70.52 Aligned_cols=77 Identities=14% Similarity=0.158 Sum_probs=62.6
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC-----CCceEEEec
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI-----PNAEAVQLD 646 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~-----~~~~~~~~d 646 (1053)
+.+.++|.| +|++|+++++.|++.| .+|.+++|+.++++++.+.+ .++..+.+|
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D 66 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAG--------------------ADVILLSRNEENLKKAREKIKSESNVDVSYIVAD 66 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEec
Confidence 457899999 6899999999999988 37999999988887766543 246788999
Q ss_pred CCCHHHHHHhhc------cccEEEecCCc
Q 001559 647 VSDHKSLCKCIS------QVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~------~~DvVI~~~p~ 669 (1053)
++|.+++.++++ ..|++||+++.
T Consensus 67 v~~~~~i~~~~~~~~~~g~iD~lv~nag~ 95 (263)
T PRK08339 67 LTKREDLERTVKELKNIGEPDIFFFSTGG 95 (263)
T ss_pred CCCHHHHHHHHHHHHhhCCCcEEEECCCC
Confidence 999988877765 37999998864
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0024 Score=70.06 Aligned_cols=77 Identities=23% Similarity=0.273 Sum_probs=62.6
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC------CceEEEe
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP------NAEAVQL 645 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~------~~~~~~~ 645 (1053)
+.++++|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+.+. ++..+.+
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G--------------------~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREG--------------------AAVALADLDAALAERAAAAIARDVAGARVLAVPA 65 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEc
Confidence 457899999 7999999999999987 378999999888877665432 3567889
Q ss_pred cCCCHHHHHHhhc-------cccEEEecCCc
Q 001559 646 DVSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 646 d~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
|++|.+++.++++ ..|++|++++.
T Consensus 66 Dl~~~~~~~~~~~~~~~~~g~id~li~~ag~ 96 (260)
T PRK07063 66 DVTDAASVAAAVAAAEEAFGPLDVLVNNAGI 96 (260)
T ss_pred cCCCHHHHHHHHHHHHHHhCCCcEEEECCCc
Confidence 9999888877665 57999999875
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.003 Score=70.62 Aligned_cols=93 Identities=12% Similarity=0.093 Sum_probs=66.3
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
++|.+||+|.+|.+++..|.+.+.. ...+|.+.+|+.++++++.+.++ ++. . .+..
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~----------------~~~~I~v~~r~~~~~~~l~~~~g-~~~--~-----~~~~ 58 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIV----------------SPDQIICSDLNVSNLKNASDKYG-ITI--T-----TNNN 58 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCC----------------CCceEEEECCCHHHHHHHHHhcC-cEE--e-----CCcH
Confidence 5799999999999999999887621 12369999999999988876553 322 1 1234
Q ss_pred HhhccccEEEecCCccccHHHHHHH---HHhCCeEEEeec
Q 001559 655 KCISQVEIVISLLPASCHVMVANAC---IEFKKHLVTASY 691 (1053)
Q Consensus 655 ~~i~~~DvVI~~~p~~~~~~v~~ac---i~~g~~~vD~sy 691 (1053)
++++++|+||-|+|+.....+.... ++.++.++|+.-
T Consensus 59 e~~~~aDiIiLavkP~~~~~vl~~l~~~~~~~~lvISi~A 98 (272)
T PRK12491 59 EVANSADILILSIKPDLYSSVINQIKDQIKNDVIVVTIAA 98 (272)
T ss_pred HHHhhCCEEEEEeChHHHHHHHHHHHHhhcCCcEEEEeCC
Confidence 5677899999999875545544332 445677888763
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0027 Score=69.52 Aligned_cols=76 Identities=18% Similarity=0.226 Sum_probs=61.9
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
++++|+|+| +|++|+.+++.|++.| .+|.+++|+..+.+++.+.+. ...+.+|++|.+
T Consensus 6 ~~~~vlItGasggIG~~~a~~l~~~G--------------------~~v~~~~r~~~~~~~~~~~~~-~~~~~~D~~~~~ 64 (255)
T PRK06057 6 AGRVAVITGGGSGIGLATARRLAAEG--------------------ATVVVGDIDPEAGKAAADEVG-GLFVPTDVTDED 64 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcC--------------------CEEEEEeCCHHHHHHHHHHcC-CcEEEeeCCCHH
Confidence 467899999 5999999999999987 378999999888777766554 357889999988
Q ss_pred HHHHhhc-------cccEEEecCCc
Q 001559 652 SLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 652 ~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++.++++ ..|+||++++.
T Consensus 65 ~~~~~~~~~~~~~~~id~vi~~ag~ 89 (255)
T PRK06057 65 AVNALFDTAAETYGSVDIAFNNAGI 89 (255)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCc
Confidence 8777665 46999999864
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.002 Score=74.28 Aligned_cols=77 Identities=14% Similarity=0.069 Sum_probs=61.3
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhc--C----CCceEEEe
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEG--I----PNAEAVQL 645 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~--~----~~~~~~~~ 645 (1053)
..++|+|.| +|++|+.+++.|++.| .+|.+.+|+.+++..+... . ++++++..
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~ 63 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERG--------------------YTVRATVRDPANVKKVKHLLDLPGATTRLTLWKA 63 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCC--------------------CEEEEEEcCcchhHHHHHHHhccCCCCceEEEEe
Confidence 357899999 7999999999999987 3788888886655543321 1 23677889
Q ss_pred cCCCHHHHHHhhccccEEEecCCc
Q 001559 646 DVSDHKSLCKCISQVEIVISLLPA 669 (1053)
Q Consensus 646 d~~d~~~l~~~i~~~DvVI~~~p~ 669 (1053)
|++|.+.+.++++++|+||+++..
T Consensus 64 Dl~d~~~~~~~~~~~d~ViH~A~~ 87 (351)
T PLN02650 64 DLAVEGSFDDAIRGCTGVFHVATP 87 (351)
T ss_pred cCCChhhHHHHHhCCCEEEEeCCC
Confidence 999999999999999999999853
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0018 Score=73.61 Aligned_cols=76 Identities=17% Similarity=0.178 Sum_probs=60.5
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHH---Hhc---CCCceEEEec
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEV---IEG---IPNAEAVQLD 646 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l---~~~---~~~~~~~~~d 646 (1053)
.++|+|.| +|++|+.+++.|++.| .+|.+..|+..+++.+ ... .++++.+.+|
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~g--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D 64 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLRG--------------------YTVKATVRDLTDRKKTEHLLALDGAKERLKLFKAD 64 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC--------------------CEEEEEECCCcchHHHHHHHhccCCCCceEEEecC
Confidence 57899999 7999999999999987 3788778876544332 211 1357888899
Q ss_pred CCCHHHHHHhhccccEEEecCCc
Q 001559 647 VSDHKSLCKCISQVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~~~DvVI~~~p~ 669 (1053)
++|.+.+.++++++|+||+++..
T Consensus 65 l~~~~~~~~~~~~~d~vih~A~~ 87 (322)
T PLN02986 65 LLEESSFEQAIEGCDAVFHTASP 87 (322)
T ss_pred CCCcchHHHHHhCCCEEEEeCCC
Confidence 99999999999999999999864
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0018 Score=73.68 Aligned_cols=76 Identities=18% Similarity=0.125 Sum_probs=60.0
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHH---hc---CCCceEEEec
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVI---EG---IPNAEAVQLD 646 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~---~~---~~~~~~~~~d 646 (1053)
+++|+|.| +|++|+.+++.|++.| .+|.+..|+.++.++.. .. .++++++.+|
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D 64 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRG--------------------YTINATVRDPKDRKKTDHLLALDGAKERLKLFKAD 64 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCC--------------------CEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCC
Confidence 57899999 6999999999999987 37777778765443321 11 1246788899
Q ss_pred CCCHHHHHHhhccccEEEecCCc
Q 001559 647 VSDHKSLCKCISQVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~~~DvVI~~~p~ 669 (1053)
++|.+.+.++++++|+||+++..
T Consensus 65 ~~d~~~~~~~~~~~d~vih~A~~ 87 (325)
T PLN02989 65 LLDEGSFELAIDGCETVFHTASP 87 (325)
T ss_pred CCCchHHHHHHcCCCEEEEeCCC
Confidence 99999999999999999999864
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.003 Score=68.84 Aligned_cols=76 Identities=26% Similarity=0.323 Sum_probs=62.3
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecCC
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDVS 648 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~~ 648 (1053)
.++|+|.| +|++|+.+++.|++.| .+|.+.+|+.++++++...+ .++..+.+|++
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 63 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEG--------------------AKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVT 63 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC--------------------CeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCC
Confidence 47899999 7999999999999887 37899999988877665443 35678899999
Q ss_pred CHHHHHHhhc-------cccEEEecCCc
Q 001559 649 DHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 649 d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
|.+++.++++ ..|+||+++..
T Consensus 64 ~~~~~~~~~~~~~~~~~~~d~vi~~a~~ 91 (258)
T PRK12429 64 DEEAINAGIDYAVETFGGVDILVNNAGI 91 (258)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 9988877665 47999999864
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0021 Score=76.14 Aligned_cols=77 Identities=21% Similarity=0.343 Sum_probs=54.5
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCc-----e-----EEE
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNA-----E-----AVQ 644 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~-----~-----~~~ 644 (1053)
|+|.|||+|.+|.++|..|++.| .+|.++|++.++.+++.+....+ + .+.
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G--------------------~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~ 60 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLG--------------------HEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALA 60 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcC--------------------CeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhh
Confidence 47999999999999999999887 37999999999998876532110 0 000
Q ss_pred ec-CCCHHHHHHhhccccEEEecCCccc
Q 001559 645 LD-VSDHKSLCKCISQVEIVISLLPASC 671 (1053)
Q Consensus 645 ~d-~~d~~~l~~~i~~~DvVI~~~p~~~ 671 (1053)
.. ++-..++.+.++++|+||-|+|...
T Consensus 61 ~g~l~~~~~~~~~~~~advvii~vpt~~ 88 (411)
T TIGR03026 61 AGRLRATTDYEDAIRDADVIIICVPTPL 88 (411)
T ss_pred cCCeEEECCHHHHHhhCCEEEEEeCCCC
Confidence 00 0011234566789999999998754
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0035 Score=69.09 Aligned_cols=77 Identities=21% Similarity=0.265 Sum_probs=62.1
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
+.+.++|.| +|++|+.+++.|+++| .+|.+++|+.++.+++.+.+ .++.++.+|+
T Consensus 9 ~~~~vlItGasggIG~~~a~~l~~~G--------------------~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~ 68 (263)
T PRK07814 9 DDQVAVVTGAGRGLGAAIALAFAEAG--------------------ADVLIAARTESQLDEVAEQIRAAGRRAHVVAADL 68 (263)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccC
Confidence 467899999 6899999999999987 38999999988777666543 2466788999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+|.+++.++++ +.|+||+++..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~id~vi~~Ag~ 97 (263)
T PRK07814 69 AHPEATAGLAGQAVEAFGRLDIVVNNVGG 97 (263)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 99988876554 57999999864
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.003 Score=72.55 Aligned_cols=78 Identities=19% Similarity=0.266 Sum_probs=63.1
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
+.+.|+|.| +|++|+++++.|++.| .+|.+++|+.++++++.+.+ .++.++.+|+
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G--------------------~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv 65 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRG--------------------ARLVLAARDEEALQAVAEECRALGAEVLVVPTDV 65 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeC
Confidence 457899999 5999999999999987 37899999999888776543 2356778999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCcc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+|.+++.++++ ..|++||+++..
T Consensus 66 ~d~~~v~~~~~~~~~~~g~iD~lVnnAG~~ 95 (330)
T PRK06139 66 TDADQVKALATQAASFGGRIDVWVNNVGVG 95 (330)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 99988877663 579999998753
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0016 Score=73.75 Aligned_cols=76 Identities=14% Similarity=0.131 Sum_probs=59.8
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHH---HHHhc---CCCceEEEec
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAE---EVIEG---IPNAEAVQLD 646 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~---~l~~~---~~~~~~~~~d 646 (1053)
.++|+|.| +|++|+.+++.|++.| .+|.+..|+.++.. .+... .++++++..|
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D 63 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRG--------------------YTVKATVRDPNDPKKTEHLLALDGAKERLHLFKAN 63 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCC--------------------CEEEEEEcCCCchhhHHHHHhccCCCCceEEEecc
Confidence 47899999 7999999999999987 37887888754332 22111 2357788899
Q ss_pred CCCHHHHHHhhccccEEEecCCc
Q 001559 647 VSDHKSLCKCISQVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~~~DvVI~~~p~ 669 (1053)
++|.+.+.++++++|+||++++.
T Consensus 64 l~~~~~~~~~~~~~d~Vih~A~~ 86 (322)
T PLN02662 64 LLEEGSFDSVVDGCEGVFHTASP 86 (322)
T ss_pred ccCcchHHHHHcCCCEEEEeCCc
Confidence 99998999999999999999864
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0018 Score=63.15 Aligned_cols=96 Identities=21% Similarity=0.161 Sum_probs=61.7
Q ss_pred eEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHH
Q 001559 576 SVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 576 ~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
||.|+| .|.+|+.++..|.+...+ .-+.+++++.++.+.+....+++.....+..+.+.+.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~------------------~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDF------------------EVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFE 62 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCc------------------eEEEEEechhhcCcCHHHHCcccccccccccccCChh
Confidence 589999 599999999999886533 1244457665555555544443321111111222333
Q ss_pred HhhccccEEEecCCccccHHH---HHHHHHhCCeEEEeec
Q 001559 655 KCISQVEIVISLLPASCHVMV---ANACIEFKKHLVTASY 691 (1053)
Q Consensus 655 ~~i~~~DvVI~~~p~~~~~~v---~~aci~~g~~~vD~sy 691 (1053)
..++|+|+.|+|...+..+ ...+++.|+.++|++.
T Consensus 63 --~~~~DvV~~~~~~~~~~~~~~~~~~~~~~g~~viD~s~ 100 (122)
T smart00859 63 --ELAVDIVFLALPHGVSKEIAPLLPKAAEAGVKVIDLSS 100 (122)
T ss_pred --hcCCCEEEEcCCcHHHHHHHHHHHhhhcCCCEEEECCc
Confidence 2589999999999887654 3445689999999984
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0032 Score=68.87 Aligned_cols=77 Identities=22% Similarity=0.294 Sum_probs=62.3
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
+.+.++|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+.+ .++..+.+|+
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~ 64 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREG--------------------AKVVVGARRQAELDQLVAEIRAEGGEAVALAGDV 64 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCC
Confidence 357899999 6999999999999987 37899999988887776543 2466788999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+|.+++.++++ ..|++|++++.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~id~li~~ag~ 93 (254)
T PRK07478 65 RDEAYAKALVALAVERFGGLDIAFNNAGT 93 (254)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 99888776665 47999999875
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.006 Score=63.89 Aligned_cols=91 Identities=19% Similarity=0.257 Sum_probs=66.4
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC---CceEEEecCCCHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP---NAEAVQLDVSDHK 651 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~---~~~~~~~d~~d~~ 651 (1053)
|+++|+|+.+++..+++.|++.| .+|.+++|+.++++.+...++ ++..+.+|++|.+
T Consensus 1 m~vlVtGGtG~gg~la~~L~~~G--------------------~~V~v~~R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~ 60 (177)
T PRK08309 1 MHALVIGGTGMLKRVSLWLCEKG--------------------FHVSVIARREVKLENVKRESTTPESITPLPLDYHDDD 60 (177)
T ss_pred CEEEEECcCHHHHHHHHHHHHCc--------------------CEEEEEECCHHHHHHHHHHhhcCCcEEEEEccCCCHH
Confidence 46899995455566999999987 388999999988887765442 4667788999998
Q ss_pred HHHHhhcc-------ccEEEecCCccccHHHHHHHHHhCCe
Q 001559 652 SLCKCISQ-------VEIVISLLPASCHVMVANACIEFKKH 685 (1053)
Q Consensus 652 ~l~~~i~~-------~DvVI~~~p~~~~~~v~~aci~~g~~ 685 (1053)
++.+++++ .|++|+.+-......++.+|-+.|.+
T Consensus 61 sv~~~i~~~l~~~g~id~lv~~vh~~~~~~~~~~~~~~gv~ 101 (177)
T PRK08309 61 ALKLAIKSTIEKNGPFDLAVAWIHSSAKDALSVVCRELDGS 101 (177)
T ss_pred HHHHHHHHHHHHcCCCeEEEEeccccchhhHHHHHHHHccC
Confidence 88776653 46777766555555666677776655
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0033 Score=71.57 Aligned_cols=79 Identities=19% Similarity=0.220 Sum_probs=62.7
Q ss_pred CCCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----C--CceEE
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----P--NAEAV 643 (1053)
Q Consensus 571 ~~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~--~~~~~ 643 (1053)
..+++.++|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+.+ + ++.++
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G--------------------~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~ 70 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAG--------------------AEVILPVRNRAKGEAAVAAIRTAVPDAKLSLR 70 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHHhCCCCceEEE
Confidence 34567899999 7999999999999987 38999999988877665432 2 36778
Q ss_pred EecCCCHHHHHHhhcc-------ccEEEecCCc
Q 001559 644 QLDVSDHKSLCKCISQ-------VEIVISLLPA 669 (1053)
Q Consensus 644 ~~d~~d~~~l~~~i~~-------~DvVI~~~p~ 669 (1053)
.+|++|.+++.+++.+ .|++|+.++.
T Consensus 71 ~~Dl~d~~sv~~~~~~~~~~~~~iD~li~nAG~ 103 (313)
T PRK05854 71 ALDLSSLASVAALGEQLRAEGRPIHLLINNAGV 103 (313)
T ss_pred EecCCCHHHHHHHHHHHHHhCCCccEEEECCcc
Confidence 9999998887766543 7999999875
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.002 Score=72.99 Aligned_cols=96 Identities=18% Similarity=0.245 Sum_probs=70.4
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCce-E--EEecCCC
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAE-A--VQLDVSD 649 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~-~--~~~d~~d 649 (1053)
++||.|+| +|+.|..+.+.|+.++. .++.++..+..+-+.+.+.+|+.. . .....-|
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~-------------------ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~ 62 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPD-------------------VELILISSRERAGKPVSDVHPNLRGLVDLPFQTID 62 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCC-------------------eEEEEeechhhcCCchHHhCcccccccccccccCC
Confidence 67999999 79999999999999984 356655554434456666777643 1 1111113
Q ss_pred HHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEee
Q 001559 650 HKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~s 690 (1053)
.+.+ ...+||+|+-|+|.+....++...++.|+.++|+|
T Consensus 63 ~~~~--~~~~~DvvFlalPhg~s~~~v~~l~~~g~~VIDLS 101 (349)
T COG0002 63 PEKI--ELDECDVVFLALPHGVSAELVPELLEAGCKVIDLS 101 (349)
T ss_pred hhhh--hcccCCEEEEecCchhHHHHHHHHHhCCCeEEECC
Confidence 3333 34569999999999988888888899999999998
|
|
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0063 Score=66.52 Aligned_cols=95 Identities=22% Similarity=0.234 Sum_probs=57.7
Q ss_pred eEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC-------------------HHHHHH----
Q 001559 576 SVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY-------------------LKDAEE---- 632 (1053)
Q Consensus 576 ~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~-------------------~~~a~~---- 632 (1053)
+|+|+|+|++|..+++.|+..| + -+++|+|.+ ..|++.
T Consensus 1 kVlvvG~GGlG~eilk~La~~G-v------------------g~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~ 61 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMG-F------------------GQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEA 61 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-C------------------CeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHH
Confidence 5899999999999999999988 3 144444443 223333
Q ss_pred HHhcCCCceE--EEecCCCHHHH-HHhhccccEEEecCCcccc-HHHHHHHHHhCCeEEEe
Q 001559 633 VIEGIPNAEA--VQLDVSDHKSL-CKCISQVEIVISLLPASCH-VMVANACIEFKKHLVTA 689 (1053)
Q Consensus 633 l~~~~~~~~~--~~~d~~d~~~l-~~~i~~~DvVI~~~p~~~~-~~v~~aci~~g~~~vD~ 689 (1053)
+.+..|.+++ ...++.+.+.. .+.++++|+||+++..... ..+.+.|.+.++.++|.
T Consensus 62 l~~~np~v~i~~~~~~i~~~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~ 122 (234)
T cd01484 62 VNDRNPNCKVVPYQNKVGPEQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIES 122 (234)
T ss_pred HHHHCCCCEEEEEeccCChhhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3334555443 33334322222 3678889999998764322 33455666666655554
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0023 Score=71.42 Aligned_cols=78 Identities=17% Similarity=0.234 Sum_probs=62.6
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC----CceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP----NAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~----~~~~~~~d~ 647 (1053)
+++.++|.| +|++|+++++.|++.| .+|.+++|+.++++++.+.+. ++..+.+|+
T Consensus 5 ~~k~vlVTGas~gIG~ala~~La~~G--------------------~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv 64 (275)
T PRK05876 5 PGRGAVITGGASGIGLATGTEFARRG--------------------ARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDV 64 (275)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 457799998 7999999999999987 378999999888777665432 356788999
Q ss_pred CCHHHHHHhhcc-------ccEEEecCCcc
Q 001559 648 SDHKSLCKCISQ-------VEIVISLLPAS 670 (1053)
Q Consensus 648 ~d~~~l~~~i~~-------~DvVI~~~p~~ 670 (1053)
+|.+++.+++.+ .|+|||+++..
T Consensus 65 ~d~~~v~~~~~~~~~~~g~id~li~nAg~~ 94 (275)
T PRK05876 65 RHREEVTHLADEAFRLLGHVDVVFSNAGIV 94 (275)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 999888776654 69999998753
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0042 Score=70.55 Aligned_cols=95 Identities=20% Similarity=0.259 Sum_probs=58.7
Q ss_pred eEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC-------------------HHHHHH----
Q 001559 576 SVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY-------------------LKDAEE---- 632 (1053)
Q Consensus 576 ~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~-------------------~~~a~~---- 632 (1053)
+|+|+|+|++|..+++.|+..| + -+++|+|.+ ..|++.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~G-v------------------g~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~ 61 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTG-F------------------GEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEA 61 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhc-C------------------CeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHH
Confidence 5999999999999999999988 3 245555543 123333
Q ss_pred HHhcCCCceE--EEecCCCHHHHHHhhccccEEEecCCcc-ccHHHHHHHHHhCCeEEEe
Q 001559 633 VIEGIPNAEA--VQLDVSDHKSLCKCISQVEIVISLLPAS-CHVMVANACIEFKKHLVTA 689 (1053)
Q Consensus 633 l~~~~~~~~~--~~~d~~d~~~l~~~i~~~DvVI~~~p~~-~~~~v~~aci~~g~~~vD~ 689 (1053)
+.+..|.+++ ...++.+.....+.++++|+||+++... ....+.+.|.+.++.+++.
T Consensus 62 l~~lNp~v~V~~~~~~i~~~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~ 121 (312)
T cd01489 62 VLSFNPNVKIVAYHANIKDPDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIES 121 (312)
T ss_pred HHHHCCCCeEEEEeccCCCccchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 3333454443 3334443322346778899999988542 2234556666666666654
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0028 Score=68.49 Aligned_cols=77 Identities=25% Similarity=0.274 Sum_probs=61.8
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecCC
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDVS 648 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~~ 648 (1053)
.++++|.| +|++|+.+++.|++.| .+|.+++|+.++++++...+ .++..+.+|++
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G--------------------~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~ 66 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEG--------------------VNVGLLARTEENLKAVAEEVEAYGVKVVIATADVS 66 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCC
Confidence 46799999 7999999999999887 37899999988776654432 24667889999
Q ss_pred CHHHHHHhhc-------cccEEEecCCcc
Q 001559 649 DHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 649 d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+.+++.++++ .+|+||++++..
T Consensus 67 ~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 95 (239)
T PRK07666 67 DYEEVTAAIEQLKNELGSIDILINNAGIS 95 (239)
T ss_pred CHHHHHHHHHHHHHHcCCccEEEEcCccc
Confidence 9988877765 589999998653
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0037 Score=67.78 Aligned_cols=77 Identities=21% Similarity=0.237 Sum_probs=61.9
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
+.++++|.| +|++|+.+++.|++.| .+|.+.+|+.++++++.+.+ .++..+.+|+
T Consensus 6 ~~~~vlItGa~g~iG~~la~~l~~~G--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl 65 (250)
T PRK12939 6 AGKRALVTGAARGLGAAFAEALAEAG--------------------ATVAFNDGLAAEARELAAALEAAGGRAHAIAADL 65 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccC
Confidence 457899999 6999999999999987 37888899988777665433 3467888999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+|.+++.+++. +.|+||++++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 94 (250)
T PRK12939 66 ADPASVQRFFDAAAAALGGLDGLVNNAGI 94 (250)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 99988876664 57999999865
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0025 Score=69.61 Aligned_cols=77 Identities=23% Similarity=0.231 Sum_probs=61.7
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
+.++++|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+.+ .++..+.+|+
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~ 65 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREG--------------------AKVVVADRDAAGGEETVALIREAGGEALFVACDV 65 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCC
Confidence 457899999 6999999999999887 37999999988766555432 2467889999
Q ss_pred CCHHHHHHhhcc-------ccEEEecCCc
Q 001559 648 SDHKSLCKCISQ-------VEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~~-------~DvVI~~~p~ 669 (1053)
+|.+++.+++++ .|+||++++.
T Consensus 66 ~~~~~i~~~~~~~~~~~g~id~li~~ag~ 94 (253)
T PRK06172 66 TRDAEVKALVEQTIAAYGRLDYAFNNAGI 94 (253)
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 999888777654 4999999864
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0036 Score=68.32 Aligned_cols=78 Identities=24% Similarity=0.333 Sum_probs=63.6
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEec
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLD 646 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d 646 (1053)
...++|+|.| +|++|+.+++.|++.| .+|.+++|+.++++++...+ .++..+.+|
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G--------------------~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D 66 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAG--------------------AKVVLASRRVERLKELRAEIEAEGGAAHVVSLD 66 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEec
Confidence 3468899999 6999999999999887 37999999998887766542 246788899
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+++.+++.+.++ ..|+||++++.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~d~li~~ag~ 96 (258)
T PRK06949 67 VTDYQSIKAAVAHAETEAGTIDILVNNSGV 96 (258)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 999888877765 47999999875
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0035 Score=70.67 Aligned_cols=79 Identities=15% Similarity=0.196 Sum_probs=63.5
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC---CceEEEecC
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP---NAEAVQLDV 647 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~---~~~~~~~d~ 647 (1053)
.+.++++|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+.++ .+..+.+|+
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~G--------------------~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv 66 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHARG--------------------AKLALVDLEEAELAALAAELGGDDRVLTVVADV 66 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 3567899999 6999999999999987 379999999999888877664 234456999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCcc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+|.+++.++++ ..|+||++++..
T Consensus 67 ~d~~~v~~~~~~~~~~~g~id~vI~nAG~~ 96 (296)
T PRK05872 67 TDLAAMQAAAEEAVERFGGIDVVVANAGIA 96 (296)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 99888776654 479999998753
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0037 Score=69.42 Aligned_cols=92 Identities=14% Similarity=0.161 Sum_probs=65.2
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
+++|.|||+|.+|..++..|.+.+.. ...|.+++|+.++++++.+.+. +.. . .+.
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~-----------------~~~v~v~~r~~~~~~~~~~~~g-~~~-----~--~~~ 56 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVP-----------------AKDIIVSDPSPEKRAALAEEYG-VRA-----A--TDN 56 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCC-----------------cceEEEEcCCHHHHHHHHHhcC-Cee-----c--CCh
Confidence 57899999999999999999877510 1378999999999888776542 221 1 123
Q ss_pred HHhhccccEEEecCCccccHHHHHHHHHh-CCeEEEee
Q 001559 654 CKCISQVEIVISLLPASCHVMVANACIEF-KKHLVTAS 690 (1053)
Q Consensus 654 ~~~i~~~DvVI~~~p~~~~~~v~~aci~~-g~~~vD~s 690 (1053)
.+.+.++|+||-|+|+.....+.+.+... ++.++.++
T Consensus 57 ~~~~~~advVil~v~~~~~~~v~~~l~~~~~~~vvs~~ 94 (267)
T PRK11880 57 QEAAQEADVVVLAVKPQVMEEVLSELKGQLDKLVVSIA 94 (267)
T ss_pred HHHHhcCCEEEEEcCHHHHHHHHHHHHhhcCCEEEEec
Confidence 45567899999999987665665554332 45666654
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0039 Score=68.27 Aligned_cols=77 Identities=25% Similarity=0.289 Sum_probs=63.3
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC-CceEEEecCCCH
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NAEAVQLDVSDH 650 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~~~~~~d~~d~ 650 (1053)
..++++|.| +|++|+.+++.|+++| .+|.+++|+.++.+++.+.+. ++..+.+|++|.
T Consensus 5 ~~~~vlItGas~~iG~~ia~~l~~~G--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~ 64 (257)
T PRK07067 5 QGKVALLTGAASGIGEAVAERYLAEG--------------------ARVVIADIKPARARLAALEIGPAAIAVSLDVTRQ 64 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcC--------------------CEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCH
Confidence 356899999 6999999999999987 379999999988887776543 467788999998
Q ss_pred HHHHHhhc-------cccEEEecCCc
Q 001559 651 KSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 651 ~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+++.++++ ..|+||++++.
T Consensus 65 ~~~~~~~~~~~~~~~~id~li~~ag~ 90 (257)
T PRK07067 65 DSIDRIVAAAVERFGGIDILFNNAAL 90 (257)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 88877665 46999999864
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0041 Score=67.31 Aligned_cols=77 Identities=27% Similarity=0.299 Sum_probs=61.2
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhc----CCCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEG----IPNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~----~~~~~~~~~d~ 647 (1053)
+.++|+|.| +|++|+.+++.|+++| ..|.+.+|+.++..++... ..++..+.+|+
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~g--------------------~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl 64 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAADG--------------------AEVIVVDICGDDAAATAELVEAAGGKARARQVDV 64 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 457899999 7999999999999987 3789999997665544432 23477888999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+|.+++.++++ .+|+||++++.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 93 (251)
T PRK12826 65 RDRAALKAAVAAGVEDFGRLDILVANAGI 93 (251)
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 99988877765 57999999864
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0035 Score=69.42 Aligned_cols=77 Identities=16% Similarity=0.217 Sum_probs=61.6
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC------CCceEEEe
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI------PNAEAVQL 645 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~------~~~~~~~~ 645 (1053)
+.++++|.| +|++|+.+++.|++.| .+|.+++|+.++.+.+.+.+ .++.++.+
T Consensus 6 ~~k~vlItGasg~IG~~la~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~ 65 (276)
T PRK05875 6 QDRTYLVTGGGSGIGKGVAAGLVAAG--------------------AAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPA 65 (276)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC--------------------CeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEc
Confidence 457899999 6999999999999987 37899999987776655432 24567789
Q ss_pred cCCCHHHHHHhhc-------cccEEEecCCc
Q 001559 646 DVSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 646 d~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
|++|.+++.++++ ..|+||+++..
T Consensus 66 Dl~~~~~~~~~~~~~~~~~~~~d~li~~ag~ 96 (276)
T PRK05875 66 DVTDEDQVARAVDAATAWHGRLHGVVHCAGG 96 (276)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 9999888877766 57999999864
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0029 Score=69.11 Aligned_cols=75 Identities=21% Similarity=0.297 Sum_probs=60.2
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecCCC
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDVSD 649 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~~d 649 (1053)
++++|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+.+ .++..+.+|++|
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G--------------------~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 61 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEG--------------------ANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRN 61 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC
Confidence 6789999 6999999999999987 37999999988777665433 246778899999
Q ss_pred HHHHHHhhc-------cccEEEecCCc
Q 001559 650 HKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 650 ~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
.+++.+++. ..|+||++++.
T Consensus 62 ~~~~~~~~~~~~~~~~~id~lI~~ag~ 88 (252)
T PRK07677 62 PEDVQKMVEQIDEKFGRIDALINNAAG 88 (252)
T ss_pred HHHHHHHHHHHHHHhCCccEEEECCCC
Confidence 888776554 46999999864
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0021 Score=65.34 Aligned_cols=77 Identities=27% Similarity=0.351 Sum_probs=61.2
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC--HHHHHHHHhcC----CCceEEEecC
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY--LKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~--~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
|.++|+| +|++|+.+++.|++.+. ..|.+++|+ .++++++...+ .++.++++|+
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~-------------------~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~ 61 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGA-------------------RVVILTSRSEDSEGAQELIQELKAPGAKITFIECDL 61 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTT-------------------EEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESET
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCc-------------------eEEEEeeecccccccccccccccccccccccccccc
Confidence 4688998 79999999999999862 478999999 67777775443 3578889999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCcc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
++.+++.++++ ..|++|++++..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~ld~li~~ag~~ 91 (167)
T PF00106_consen 62 SDPESIRALIEEVIKRFGPLDILINNAGIF 91 (167)
T ss_dssp TSHHHHHHHHHHHHHHHSSESEEEEECSCT
T ss_pred cccccccccccccccccccccccccccccc
Confidence 99888776654 469999998753
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0042 Score=67.76 Aligned_cols=77 Identities=17% Similarity=0.192 Sum_probs=62.2
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhc----CCCceEEEecCC
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEG----IPNAEAVQLDVS 648 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~----~~~~~~~~~d~~ 648 (1053)
+++|+|.| +|++|+.+++.|++.| .+|.+.+|+.++++++.+. ..++..+.+|++
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~ 61 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKG--------------------HNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLT 61 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCC
Confidence 35799999 6999999999999887 3788899988777665443 234778889999
Q ss_pred CHHHHHHhhc-cccEEEecCCcc
Q 001559 649 DHKSLCKCIS-QVEIVISLLPAS 670 (1053)
Q Consensus 649 d~~~l~~~i~-~~DvVI~~~p~~ 670 (1053)
|.+++.+.+. ..|+||++++..
T Consensus 62 ~~~~~~~~~~~~id~vi~~ag~~ 84 (257)
T PRK09291 62 DAIDRAQAAEWDVDVLLNNAGIG 84 (257)
T ss_pred CHHHHHHHhcCCCCEEEECCCcC
Confidence 9999888776 799999998653
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.004 Score=69.02 Aligned_cols=75 Identities=25% Similarity=0.342 Sum_probs=60.6
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
+++++|.| +|++|+.+++.|++.| .+|.+.+|+.++.+++.+. ++..+.+|++|.++
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~--~~~~~~~Dl~~~~~ 58 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAG--------------------YEVWATARKAEDVEALAAA--GFTAVQLDVNDGAA 58 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHC--CCeEEEeeCCCHHH
Confidence 36789999 6999999999999887 3789999998887766543 46778899999888
Q ss_pred HHHhhc-------cccEEEecCCcc
Q 001559 653 LCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 653 l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+.++++ ..|+||++++..
T Consensus 59 ~~~~~~~~~~~~~~id~vi~~ag~~ 83 (274)
T PRK05693 59 LARLAEELEAEHGGLDVLINNAGYG 83 (274)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCC
Confidence 876654 469999999753
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0029 Score=72.42 Aligned_cols=77 Identities=17% Similarity=0.267 Sum_probs=59.7
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHH-----hcCCCceEEEe
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVI-----EGIPNAEAVQL 645 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~-----~~~~~~~~~~~ 645 (1053)
.++++|+|.| +|++|+.+++.|++.| .+|.+..|+.+....+. ...++++.+.+
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~g--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQKG--------------------YAVNTTVRDPENQKKIAHLRALQELGDLKIFGA 66 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHCC--------------------CEEEEEECCCCCHHHHHHHHhcCCCCceEEEEc
Confidence 3468899999 8999999999999987 36777777654332211 11235778899
Q ss_pred cCCCHHHHHHhhccccEEEecCC
Q 001559 646 DVSDHKSLCKCISQVEIVISLLP 668 (1053)
Q Consensus 646 d~~d~~~l~~~i~~~DvVI~~~p 668 (1053)
|++|.+.+.+.++++|+||+++.
T Consensus 67 Dl~d~~~~~~~~~~~d~vih~A~ 89 (338)
T PLN00198 67 DLTDEESFEAPIAGCDLVFHVAT 89 (338)
T ss_pred CCCChHHHHHHHhcCCEEEEeCC
Confidence 99999999999999999999985
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0042 Score=67.48 Aligned_cols=77 Identities=31% Similarity=0.365 Sum_probs=60.5
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
+.++++|.| +|++|+.+++.|++.| .+|.+.+|+.+..+++.+.+ +++..+.+|+
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g--------------------~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl 64 (250)
T PRK07774 5 DDKVAIVTGAAGGIGQAYAEALAREG--------------------ASVVVADINAEGAERVAKQIVADGGTAIAVQVDV 64 (250)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCC
Confidence 457899999 5999999999999987 37899999977665554432 2456778999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+|.+++.++++ ..|+||++++.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 93 (250)
T PRK07774 65 SDPDSAKAMADATVSAFGGIDYLVNNAAI 93 (250)
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 99988776555 47999999975
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0034 Score=67.45 Aligned_cols=75 Identities=17% Similarity=0.220 Sum_probs=60.0
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
+++|+|.| +|++|+.+++.|++.| .+|.+++|+.++.+++. .+.++....+|++|.++
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~G--------------------~~V~~~~r~~~~~~~~~-~~~~~~~~~~D~~d~~~ 59 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERG--------------------WQVTATVRGPQQDTALQ-ALPGVHIEKLDMNDPAS 59 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhCC--------------------CEEEEEeCCCcchHHHH-hccccceEEcCCCCHHH
Confidence 36799999 7999999999999987 38999999987766543 34567788899999887
Q ss_pred HHHhhc-----cccEEEecCCc
Q 001559 653 LCKCIS-----QVEIVISLLPA 669 (1053)
Q Consensus 653 l~~~i~-----~~DvVI~~~p~ 669 (1053)
+.++++ ..|+||++++.
T Consensus 60 ~~~~~~~~~~~~id~vi~~ag~ 81 (225)
T PRK08177 60 LDQLLQRLQGQRFDLLFVNAGI 81 (225)
T ss_pred HHHHHHHhhcCCCCEEEEcCcc
Confidence 776655 47999999865
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0037 Score=68.36 Aligned_cols=76 Identities=20% Similarity=0.289 Sum_probs=60.6
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecCC
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDVS 648 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~~ 648 (1053)
++.++|.| +|++|+.+++.|++.| .+|.+.+|+.++.+++...+ .++..+.+|++
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 61 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDG--------------------FKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVS 61 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 35789998 7999999999999987 37899999988777665543 23567889999
Q ss_pred CHHHHHHhhc-------cccEEEecCCc
Q 001559 649 DHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 649 d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
|.+++.++++ +.|+||++++.
T Consensus 62 ~~~~~~~~~~~~~~~~~~id~vi~~ag~ 89 (256)
T PRK08643 62 DRDQVFAAVRQVVDTFGDLNVVVNNAGV 89 (256)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 9988776655 46999999865
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0036 Score=70.69 Aligned_cols=79 Identities=16% Similarity=0.239 Sum_probs=61.7
Q ss_pred CCCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC------CCceEE
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI------PNAEAV 643 (1053)
Q Consensus 571 ~~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~------~~~~~~ 643 (1053)
..+.+.|+|.| +|++|+.+++.|++.| .+|.+++|+.+++++..+.+ .++..+
T Consensus 13 ~~~~k~vlItGas~gIG~~~a~~l~~~G--------------------~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~ 72 (306)
T PRK06197 13 DQSGRVAVVTGANTGLGYETAAALAAKG--------------------AHVVLAVRNLDKGKAAAARITAATPGADVTLQ 72 (306)
T ss_pred cCCCCEEEEcCCCCcHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHHhCCCCceEEE
Confidence 34568899999 6999999999999987 37889999988766544322 236678
Q ss_pred EecCCCHHHHHHhhc-------cccEEEecCCc
Q 001559 644 QLDVSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 644 ~~d~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
.+|++|.+++.++++ ..|+||++++.
T Consensus 73 ~~Dl~d~~~v~~~~~~~~~~~~~iD~li~nAg~ 105 (306)
T PRK06197 73 ELDLTSLASVRAAADALRAAYPRIDLLINNAGV 105 (306)
T ss_pred ECCCCCHHHHHHHHHHHHhhCCCCCEEEECCcc
Confidence 899999888776654 47999999865
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0042 Score=67.90 Aligned_cols=76 Identities=21% Similarity=0.318 Sum_probs=62.5
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC--CceEEEecCCCH
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP--NAEAVQLDVSDH 650 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~--~~~~~~~d~~d~ 650 (1053)
.++++|.| +|++|+.+++.|++.| .+|.+.+|+.++++++.+.+. ++..+.+|+.|.
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~ 61 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAG--------------------DRVLALDIDAAALAAFADALGDARFVPVACDLTDA 61 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCH
Confidence 35799999 5999999999999887 378999999988887776543 367789999999
Q ss_pred HHHHHhhcc-------ccEEEecCCc
Q 001559 651 KSLCKCISQ-------VEIVISLLPA 669 (1053)
Q Consensus 651 ~~l~~~i~~-------~DvVI~~~p~ 669 (1053)
+++.+++.+ .|+||+++..
T Consensus 62 ~~~~~~~~~~~~~~~~~d~vi~~ag~ 87 (257)
T PRK07074 62 ASLAAALANAAAERGPVDVLVANAGA 87 (257)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 888766654 7999999864
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0047 Score=72.10 Aligned_cols=75 Identities=17% Similarity=0.170 Sum_probs=56.8
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
.++|+|+|.| +|++|+.++++|.+.| .+|.+++|..... +.......+.+..|++|.
T Consensus 19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G--------------------~~V~~v~r~~~~~--~~~~~~~~~~~~~Dl~d~ 76 (370)
T PLN02695 19 SEKLRICITGAGGFIASHIARRLKAEG--------------------HYIIASDWKKNEH--MSEDMFCHEFHLVDLRVM 76 (370)
T ss_pred CCCCEEEEECCccHHHHHHHHHHHhCC--------------------CEEEEEEeccccc--cccccccceEEECCCCCH
Confidence 3568999999 6999999999999887 3788888753211 111111246677899998
Q ss_pred HHHHHhhccccEEEecCC
Q 001559 651 KSLCKCISQVEIVISLLP 668 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p 668 (1053)
+.+.+.++++|+||+++.
T Consensus 77 ~~~~~~~~~~D~Vih~Aa 94 (370)
T PLN02695 77 ENCLKVTKGVDHVFNLAA 94 (370)
T ss_pred HHHHHHHhCCCEEEEccc
Confidence 888888889999999984
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0049 Score=66.64 Aligned_cols=77 Identities=22% Similarity=0.310 Sum_probs=63.5
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
+.++++|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+..+ +..+.+|++|.+
T Consensus 8 ~~~~~lItGa~g~iG~~~a~~l~~~g--------------------~~V~~~~r~~~~~~~~~~~~~-~~~~~~D~~~~~ 66 (245)
T PRK07060 8 SGKSVLVTGASSGIGRACAVALAQRG--------------------ARVVAAARNAAALDRLAGETG-CEPLRLDVGDDA 66 (245)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHhC-CeEEEecCCCHH
Confidence 457899999 5999999999999987 379999999988888776543 567889999988
Q ss_pred HHHHhhc---cccEEEecCCcc
Q 001559 652 SLCKCIS---QVEIVISLLPAS 670 (1053)
Q Consensus 652 ~l~~~i~---~~DvVI~~~p~~ 670 (1053)
++.++++ ..|+||++++..
T Consensus 67 ~v~~~~~~~~~~d~vi~~ag~~ 88 (245)
T PRK07060 67 AIRAALAAAGAFDGLVNCAGIA 88 (245)
T ss_pred HHHHHHHHhCCCCEEEECCCCC
Confidence 8877765 479999999753
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0033 Score=68.76 Aligned_cols=78 Identities=26% Similarity=0.332 Sum_probs=61.7
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
++++++|.| +|++|+.+++.|++.| .+|.+.+|+.++.+++.+.+ .++..+.+|+
T Consensus 6 ~~~~vlItGasg~iG~~la~~l~~~G--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl 65 (262)
T PRK13394 6 NGKTAVVTGAASGIGKEIALELARAG--------------------AAVAIADLNQDGANAVADEINKAGGKAIGVAMDV 65 (262)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC--------------------CeEEEEeCChHHHHHHHHHHHhcCceEEEEECCC
Confidence 457899999 6999999999999987 37889999987766665443 2356688999
Q ss_pred CCHHHHHHhhcc-------ccEEEecCCcc
Q 001559 648 SDHKSLCKCISQ-------VEIVISLLPAS 670 (1053)
Q Consensus 648 ~d~~~l~~~i~~-------~DvVI~~~p~~ 670 (1053)
+|.+++.+++.+ .|+||+++...
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 95 (262)
T PRK13394 66 TNEDAVNAGIDKVAERFGSVDILVSNAGIQ 95 (262)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCccC
Confidence 999888766553 79999998653
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0039 Score=69.18 Aligned_cols=78 Identities=28% Similarity=0.302 Sum_probs=62.3
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
+.+.++|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+.+ .++..+.+|+
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl 68 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAG--------------------AKVAILDRNQEKAEAVVAEIKAAGGEALAVKADV 68 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 467899999 6999999999999887 37999999988777766543 2466788999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCcc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+|.+++.++++ ..|+||++++..
T Consensus 69 ~~~~~v~~~~~~~~~~~g~id~li~~ag~~ 98 (278)
T PRK08277 69 LDKESLEQARQQILEDFGPCDILINGAGGN 98 (278)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 99887766554 579999998743
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0048 Score=74.82 Aligned_cols=115 Identities=17% Similarity=0.082 Sum_probs=71.6
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhc----------CCCceEEE
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEG----------IPNAEAVQ 644 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~----------~~~~~~~~ 644 (1053)
++|.|||+|.+|+++|..|++.| .+|++.|+++++++++.+. +.......
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G--------------------~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 64 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAG--------------------IDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPP 64 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCC--------------------CeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhh
Confidence 57999999999999999999987 3899999999887765321 11100000
Q ss_pred e-cCCCHHHHHHhhccccEEEecCCcccc--HHHH---HHHHHhCCeEEEeeccChhHHHHHHHHHHcCCeE
Q 001559 645 L-DVSDHKSLCKCISQVEIVISLLPASCH--VMVA---NACIEFKKHLVTASYIDDSMSKLDEKAKGAGITI 710 (1053)
Q Consensus 645 ~-d~~d~~~l~~~i~~~DvVI~~~p~~~~--~~v~---~aci~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~ 710 (1053)
. .+.-..++.+.++++|+||.++|.... ..+. ...+..++ +++.+-.......+.+.+...+..+
T Consensus 65 ~g~i~~~~~~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~-iI~SsTsgi~~s~l~~~~~~~~r~~ 135 (495)
T PRK07531 65 EGRLTFCASLAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDA-LIGSSTSGFLPSDLQEGMTHPERLF 135 (495)
T ss_pred hhceEeeCCHHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCc-EEEEcCCCCCHHHHHhhcCCcceEE
Confidence 0 011123466788999999999998753 2221 22233343 5666544444556655555555433
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0045 Score=68.70 Aligned_cols=91 Identities=18% Similarity=0.150 Sum_probs=62.5
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEE-ECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVA-SLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~-~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
|+|.+||+|.+|.++++.|.+.+.. ...+|.++ +|+.++++.+.+. ++... .+.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~----------------~~~~i~v~~~r~~~~~~~~~~~--g~~~~-------~~~ 55 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVV----------------PPSRISTADDSNPARRDVFQSL--GVKTA-------ASN 55 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCC----------------CcceEEEEeCCCHHHHHHHHHc--CCEEe-------CCh
Confidence 5799999999999999999987621 01368888 9999988776542 23221 223
Q ss_pred HHhhccccEEEecCCccccHHHHHH---HHHhCCeEEEee
Q 001559 654 CKCISQVEIVISLLPASCHVMVANA---CIEFKKHLVTAS 690 (1053)
Q Consensus 654 ~~~i~~~DvVI~~~p~~~~~~v~~a---ci~~g~~~vD~s 690 (1053)
.+.++++|+||-|+|+.....+... .+..++.++++.
T Consensus 56 ~e~~~~aDvVil~v~~~~~~~vl~~l~~~~~~~~~iIs~~ 95 (266)
T PLN02688 56 TEVVKSSDVIILAVKPQVVKDVLTELRPLLSKDKLLVSVA 95 (266)
T ss_pred HHHHhcCCEEEEEECcHHHHHHHHHHHhhcCCCCEEEEec
Confidence 4567789999999986554444433 234567677663
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0029 Score=69.79 Aligned_cols=73 Identities=27% Similarity=0.423 Sum_probs=59.7
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
++.|+|.| +|++|+.+++.|++.| .+|.+.+|+.++.+. ..++..+.+|++|.++
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g--------------------~~V~~~~r~~~~~~~----~~~~~~~~~D~~d~~~ 59 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAG--------------------YRVFGTSRNPARAAP----IPGVELLELDVTDDAS 59 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCC--------------------CEEEEEeCChhhccc----cCCCeeEEeecCCHHH
Confidence 45799999 7999999999999987 379999998766542 2357889999999998
Q ss_pred HHHhhcc-------ccEEEecCCcc
Q 001559 653 LCKCISQ-------VEIVISLLPAS 670 (1053)
Q Consensus 653 l~~~i~~-------~DvVI~~~p~~ 670 (1053)
+.+++++ .|+||++++..
T Consensus 60 ~~~~~~~~~~~~g~~d~li~~ag~~ 84 (270)
T PRK06179 60 VQAAVDEVIARAGRIDVLVNNAGVG 84 (270)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCC
Confidence 8887764 59999999753
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0058 Score=68.54 Aligned_cols=98 Identities=8% Similarity=0.088 Sum_probs=67.4
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH-HHHHHHHhcCCCceEEEecCCCHHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL-KDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~-~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
.++|.+||+|.+|.++++.|.+.+.. ...+|.+++|+. ++++.+...++ +... .+
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~----------------~~~~v~v~~r~~~~~~~~l~~~~g-~~~~-------~~ 58 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVV----------------KGEQITVSNRSNETRLQELHQKYG-VKGT-------HN 58 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCC----------------CcceEEEECCCCHHHHHHHHHhcC-ceEe-------CC
Confidence 36899999999999999999887511 013788999975 46777766543 3221 22
Q ss_pred HHHhhccccEEEecCCccccHHHHHH---HHHhCCeEEEe-eccChh
Q 001559 653 LCKCISQVEIVISLLPASCHVMVANA---CIEFKKHLVTA-SYIDDS 695 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~~~~~v~~a---ci~~g~~~vD~-sy~~~~ 695 (1053)
..+.++++|+||-|+|+.....+... .+..++.++++ +.++.+
T Consensus 59 ~~e~~~~aDvVilav~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~ 105 (279)
T PRK07679 59 KKELLTDANILFLAMKPKDVAEALIPFKEYIHNNQLIISLLAGVSTH 105 (279)
T ss_pred HHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHH
Confidence 34567789999999998765444433 24567789997 555433
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0047 Score=66.25 Aligned_cols=77 Identities=21% Similarity=0.326 Sum_probs=60.6
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC--CceEEEecCCC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP--NAEAVQLDVSD 649 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~--~~~~~~~d~~d 649 (1053)
++++++|.| +|++|+.+++.|++.| .+|.+++|+.++..+....+. .++.+.+|++|
T Consensus 6 ~~k~vlItGatg~iG~~la~~l~~~G--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~ 65 (239)
T PRK12828 6 QGKVVAITGGFGGLGRATAAWLAARG--------------------ARVALIGRGAAPLSQTLPGVPADALRIGGIDLVD 65 (239)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHCC--------------------CeEEEEeCChHhHHHHHHHHhhcCceEEEeecCC
Confidence 467899999 6999999999999887 379999998877655443322 36778899999
Q ss_pred HHHHHHhhc-------cccEEEecCCc
Q 001559 650 HKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 650 ~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
.+++.++++ .+|+||++++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~d~vi~~ag~ 92 (239)
T PRK12828 66 PQAARRAVDEVNRQFGRLDALVNIAGA 92 (239)
T ss_pred HHHHHHHHHHHHHHhCCcCEEEECCcc
Confidence 888876655 47999999864
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0046 Score=69.59 Aligned_cols=78 Identities=19% Similarity=0.317 Sum_probs=54.9
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCC-----ceEEEec---
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPN-----AEAVQLD--- 646 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~-----~~~~~~d--- 646 (1053)
++|.|||+|.+|..+|..|++.| .+|+++|++.++++++.+.... ++.-.++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G--------------------~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 61 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSG--------------------FQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAA 61 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCC--------------------CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 57999999999999999999887 3799999999888776532110 0000000
Q ss_pred -------CCCHHHHHHhhccccEEEecCCcccc
Q 001559 647 -------VSDHKSLCKCISQVEIVISLLPASCH 672 (1053)
Q Consensus 647 -------~~d~~~l~~~i~~~DvVI~~~p~~~~ 672 (1053)
++-..++.+.++++|+||.|+|-...
T Consensus 62 ~~~~~~~i~~~~~~~~~~~~aD~Vi~avpe~~~ 94 (288)
T PRK09260 62 RQAALARLSYSLDLKAAVADADLVIEAVPEKLE 94 (288)
T ss_pred HHHHHhCeEEeCcHHHhhcCCCEEEEeccCCHH
Confidence 00113466788999999999997653
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0047 Score=67.04 Aligned_cols=77 Identities=23% Similarity=0.346 Sum_probs=62.0
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
++++++|.| +|++|+.+++.|++.| .+|.+.+|+.++.+++...+ .++..+.+|+
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~ 61 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEG--------------------AKVAVFDLNREAAEKVAADIRAKGGNAQAFACDI 61 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC--------------------CEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCC
Confidence 357899999 6999999999999987 37888999988777665432 3477889999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+|.+++.+++. ..|+||++++.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 90 (250)
T TIGR03206 62 TDRDSVDTAVAAAEQALGPVDVLVNNAGW 90 (250)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 99888777665 47999999864
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0047 Score=71.02 Aligned_cols=78 Identities=23% Similarity=0.272 Sum_probs=62.8
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
+++.|+|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+.+ .++..+.+|+
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G--------------------~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv 66 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRG--------------------AKVVLLARGEEGLEALAAEIRAAGGEALAVVADV 66 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecC
Confidence 457899999 6999999999999987 37899999988877766543 2466788999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCcc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+|.+++.++++ ..|++||+++..
T Consensus 67 ~d~~~v~~~~~~~~~~~g~iD~lInnAg~~ 96 (334)
T PRK07109 67 ADAEAVQAAADRAEEELGPIDTWVNNAMVT 96 (334)
T ss_pred CCHHHHHHHHHHHHHHCCCCCEEEECCCcC
Confidence 99988876654 579999998753
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0056 Score=66.39 Aligned_cols=77 Identities=16% Similarity=0.131 Sum_probs=60.9
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC-CceEEEecCCCH
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NAEAVQLDVSDH 650 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~~~~~~d~~d~ 650 (1053)
++++|+|.| +|++|+.+++.|++.| .+|.+.+|+.++++++.+.++ ++..+++|++|.
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~ 64 (249)
T PRK06500 5 QGKTALITGGTSGIGLETARQFLAEG--------------------ARVAITGRDPASLEAARAELGESALVIRADAGDV 64 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC--------------------CEEEEecCCHHHHHHHHHHhCCceEEEEecCCCH
Confidence 357899999 6999999999999987 378889999887777766554 466788999987
Q ss_pred HHHHHhhc-------cccEEEecCCc
Q 001559 651 KSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 651 ~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+++.++++ ..|+||++++.
T Consensus 65 ~~~~~~~~~~~~~~~~id~vi~~ag~ 90 (249)
T PRK06500 65 AAQKALAQALAEAFGRLDAVFINAGV 90 (249)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 76654433 57999999865
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.004 Score=68.51 Aligned_cols=77 Identities=19% Similarity=0.314 Sum_probs=58.2
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHH-HHHHHhcC-----CCceEEEec
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKD-AEEVIEGI-----PNAEAVQLD 646 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~-a~~l~~~~-----~~~~~~~~d 646 (1053)
.++|+|.| +|++|+++|+.|++.+. ..|.+.+|+.++ ++++.+.+ .++.++.+|
T Consensus 8 ~~~vlItGas~giG~~la~~l~~~gg-------------------~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D 68 (253)
T PRK07904 8 PQTILLLGGTSEIGLAICERYLKNAP-------------------ARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFD 68 (253)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCC-------------------CeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEec
Confidence 46799999 79999999999998852 378899998775 55554332 147788999
Q ss_pred CCCHHHHHHhhc------cccEEEecCCc
Q 001559 647 VSDHKSLCKCIS------QVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~------~~DvVI~~~p~ 669 (1053)
++|.+++.++++ +.|++|++++.
T Consensus 69 ~~~~~~~~~~~~~~~~~g~id~li~~ag~ 97 (253)
T PRK07904 69 ALDTDSHPKVIDAAFAGGDVDVAIVAFGL 97 (253)
T ss_pred CCChHHHHHHHHHHHhcCCCCEEEEeeec
Confidence 998877554433 58999988765
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.004 Score=68.76 Aligned_cols=77 Identities=21% Similarity=0.327 Sum_probs=60.3
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
+.++++|.| +|++|+.+++.|++.| ..|.+++|+.++.+++.+.+ .++.++.+|+
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv 67 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAG--------------------ANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADV 67 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCC
Confidence 457899999 6999999999999887 37899999987766554332 2456788999
Q ss_pred CCHHHHHHhhcc-------ccEEEecCCc
Q 001559 648 SDHKSLCKCISQ-------VEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~~-------~DvVI~~~p~ 669 (1053)
+|.+++.+++++ .|+||++++.
T Consensus 68 ~~~~~i~~~~~~~~~~~~~iD~vi~~ag~ 96 (264)
T PRK07576 68 RDYAAVEAAFAQIADEFGPIDVLVSGAAG 96 (264)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 998888776654 5999998854
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0039 Score=70.04 Aligned_cols=107 Identities=20% Similarity=0.152 Sum_probs=70.1
Q ss_pred EEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHH-HHHhcCCCceEEEecCCCHHHHHH
Q 001559 578 LIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAE-EVIEGIPNAEAVQLDVSDHKSLCK 655 (1053)
Q Consensus 578 lIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~-~l~~~~~~~~~~~~d~~d~~~l~~ 655 (1053)
||.| +|++|+.+++.|.+++.. ..|.++++...... .....++..+.+.+|++|.+++.+
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~------------------~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~ 62 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYI------------------YEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEE 62 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCc------------------eEEEEcccccccccchhhhcccceeEEEeccccHHHHHH
Confidence 4677 899999999999999831 37888888654322 222333334488999999999999
Q ss_pred hhccccEEEecCCcc-ccH-HHHHHHHHhCCeEEEeeccChhHHHHHHHHHHcCCeEE
Q 001559 656 CISQVEIVISLLPAS-CHV-MVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITIL 711 (1053)
Q Consensus 656 ~i~~~DvVI~~~p~~-~~~-~v~~aci~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~l 711 (1053)
+++++|+||+++.+. ... .-.+.+.+. +-.-++.+.+.|++.|+.-+
T Consensus 63 a~~g~d~V~H~Aa~~~~~~~~~~~~~~~v---------NV~GT~nvl~aa~~~~Vkrl 111 (280)
T PF01073_consen 63 ALEGVDVVFHTAAPVPPWGDYPPEEYYKV---------NVDGTRNVLEAARKAGVKRL 111 (280)
T ss_pred HhcCCceEEEeCccccccCcccHHHHHHH---------HHHHHHHHHHHHHHcCCCEE
Confidence 999999999997432 211 111111111 11235566677777777643
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0037 Score=67.29 Aligned_cols=76 Identities=22% Similarity=0.296 Sum_probs=60.5
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecCC
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDVS 648 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~~ 648 (1053)
+++|+|.| +|++|+.+++.|+++| .+|.+++|+.++.+.+...+ .++..+.+|++
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~ 64 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADG--------------------AKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVS 64 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC--------------------CEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCC
Confidence 46899999 6999999999999887 36899999988776655433 24667789999
Q ss_pred CHHHHHHhhcc-------ccEEEecCCc
Q 001559 649 DHKSLCKCISQ-------VEIVISLLPA 669 (1053)
Q Consensus 649 d~~~l~~~i~~-------~DvVI~~~p~ 669 (1053)
|.+++.+++++ .|+||++++.
T Consensus 65 ~~~~~~~~~~~~~~~~~~id~vi~~ag~ 92 (246)
T PRK05653 65 DEAAVRALIEAAVEAFGALDILVNNAGI 92 (246)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 98887766654 4999999864
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0049 Score=68.43 Aligned_cols=77 Identities=18% Similarity=0.206 Sum_probs=62.7
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC-CceEEEecCCCHH
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NAEAVQLDVSDHK 651 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~~~~~~d~~d~~ 651 (1053)
++.|+|.| +|++|+.+++.|++.| .+|.+.+|+.++.+++.+.++ .+..+.+|++|.+
T Consensus 3 ~k~vlItGasg~iG~~~a~~l~~~g--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~ 62 (275)
T PRK08263 3 EKVWFITGASRGFGRAWTEAALERG--------------------DRVVATARDTATLADLAEKYGDRLLPLALDVTDRA 62 (275)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHhccCCeeEEEccCCCHH
Confidence 35799999 7999999999999887 378999999988887776554 4677889999988
Q ss_pred HHHHhhc-------cccEEEecCCcc
Q 001559 652 SLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 652 ~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
++.+++. ..|+||++++..
T Consensus 63 ~~~~~~~~~~~~~~~~d~vi~~ag~~ 88 (275)
T PRK08263 63 AVFAAVETAVEHFGRLDIVVNNAGYG 88 (275)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCc
Confidence 8776655 469999998753
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0036 Score=69.52 Aligned_cols=76 Identities=22% Similarity=0.325 Sum_probs=60.1
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
++++++|.| +|++|+++++.|++.| .+|.+++|+ ++++++.+.+ .++..+.+|+
T Consensus 5 ~~k~vlItGas~gIG~aia~~l~~~G--------------------~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl 63 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALAQEG--------------------AYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDI 63 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--------------------CEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeec
Confidence 457899999 6999999999999987 378999999 6666655443 2467889999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+|.+++.++++ ..|++|++++.
T Consensus 64 ~~~~~~~~~~~~~~~~~g~id~li~~Ag~ 92 (272)
T PRK08589 64 SDEQQVKDFASEIKEQFGRVDVLFNNAGV 92 (272)
T ss_pred CCHHHHHHHHHHHHHHcCCcCEEEECCCC
Confidence 99887766554 36999999865
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0078 Score=70.72 Aligned_cols=113 Identities=15% Similarity=0.151 Sum_probs=68.7
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceE---------EEe
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEA---------VQL 645 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~---------~~~ 645 (1053)
|+|.|||+|++|.++|..|+. | + +|+++|++.++.+++.+....+.- ...
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G-~-------------------~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~ 59 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-N-H-------------------EVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKI 59 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-C-C-------------------cEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCC
Confidence 479999999999999977764 5 3 799999999999988764321000 000
Q ss_pred cCCCHHHHHHhhccccEEEecCCcccc-----------HHHHHHH--HHhCCeEEEeeccChh-HHHHHHHHHHcCC
Q 001559 646 DVSDHKSLCKCISQVEIVISLLPASCH-----------VMVANAC--IEFKKHLVTASYIDDS-MSKLDEKAKGAGI 708 (1053)
Q Consensus 646 d~~d~~~l~~~i~~~DvVI~~~p~~~~-----------~~v~~ac--i~~g~~~vD~sy~~~~-~~~L~~~Ak~~Gv 708 (1053)
..+...+..+.++++|+||-|+|.... ..+.+.. ++.|+.+|+.|..++. ++++.+...+.|+
T Consensus 60 ~l~~t~~~~~~~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~~~~~v 136 (388)
T PRK15057 60 HFNATLDKNEAYRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTENI 136 (388)
T ss_pred cEEEecchhhhhcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHhhcCcE
Confidence 011112234567899999999986521 0111111 2456667777765543 3445444444443
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0065 Score=68.86 Aligned_cols=97 Identities=19% Similarity=0.213 Sum_probs=70.8
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEE-----ecCC
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQ-----LDVS 648 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~-----~d~~ 648 (1053)
+++|.|||+|..|.++|..|++.+ + .|.++.|+++-++++.+...|.++.. ..+.
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng-~-------------------~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~ 60 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNG-H-------------------EVRLWGRDEEIVAEINETRENPKYLPGILLPPNLK 60 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcC-C-------------------eeEEEecCHHHHHHHHhcCcCccccCCccCCcccc
Confidence 478999999999999999999987 2 89999999999888876533322221 1122
Q ss_pred CHHHHHHhhccccEEEecCCccccHHHHHH---HHHhCCeEEEee
Q 001559 649 DHKSLCKCISQVEIVISLLPASCHVMVANA---CIEFKKHLVTAS 690 (1053)
Q Consensus 649 d~~~l~~~i~~~DvVI~~~p~~~~~~v~~a---ci~~g~~~vD~s 690 (1053)
-..++.++++++|+|+-++|......+++. .+..++.++.++
T Consensus 61 at~Dl~~a~~~ad~iv~avPs~~~r~v~~~l~~~l~~~~~iv~~s 105 (329)
T COG0240 61 ATTDLAEALDGADIIVIAVPSQALREVLRQLKPLLLKDAIIVSAT 105 (329)
T ss_pred cccCHHHHHhcCCEEEEECChHHHHHHHHHHhhhccCCCeEEEEe
Confidence 235688999999999999998665554433 455666666665
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.007 Score=75.61 Aligned_cols=90 Identities=24% Similarity=0.234 Sum_probs=69.8
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
|+|+|.| +|++|+.+++.|.+.| .+|.+++|..... ..++++++..|++|.. +
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G--------------------~~Vi~ldr~~~~~-----~~~~ve~v~~Dl~d~~-l 54 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAG--------------------HTVSGIAQHPHDA-----LDPRVDYVCASLRNPV-L 54 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC--------------------CEEEEEeCChhhc-----ccCCceEEEccCCCHH-H
Confidence 5799999 7999999999999887 3788898875431 1245788999998874 7
Q ss_pred HHhhccccEEEecCCccc----------cHHHHHHHHHhCCeEEEee
Q 001559 654 CKCISQVEIVISLLPASC----------HVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 654 ~~~i~~~DvVI~~~p~~~----------~~~v~~aci~~g~~~vD~s 690 (1053)
.+++.++|+||++++... ...++++|.+.|+.+|-+|
T Consensus 55 ~~al~~~D~VIHLAa~~~~~~~~vNv~Gt~nLleAA~~~GvRiV~~S 101 (699)
T PRK12320 55 QELAGEADAVIHLAPVDTSAPGGVGITGLAHVANAAARAGARLLFVS 101 (699)
T ss_pred HHHhcCCCEEEEcCccCccchhhHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 788889999999997531 1245678888888777666
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0023 Score=72.26 Aligned_cols=73 Identities=25% Similarity=0.259 Sum_probs=59.6
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
++|+|.| +|++|+.+++.|++.+ .+|.+.+|+.++...+.. .+++.+.+|++|.+++
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g--------------------~~V~~~~r~~~~~~~~~~--~~~~~~~~D~~~~~~l 58 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQG--------------------EEVRVLVRPTSDRRNLEG--LDVEIVEGDLRDPASL 58 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCC--------------------CEEEEEEecCcccccccc--CCceEEEeeCCCHHHH
Confidence 4799999 6999999999999887 378999998665433221 2477889999999999
Q ss_pred HHhhccccEEEecCCc
Q 001559 654 CKCISQVEIVISLLPA 669 (1053)
Q Consensus 654 ~~~i~~~DvVI~~~p~ 669 (1053)
.++++++|+||++++.
T Consensus 59 ~~~~~~~d~vi~~a~~ 74 (328)
T TIGR03466 59 RKAVAGCRALFHVAAD 74 (328)
T ss_pred HHHHhCCCEEEEecee
Confidence 9999999999999853
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0079 Score=68.37 Aligned_cols=91 Identities=13% Similarity=0.089 Sum_probs=62.9
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
.++++|.|||+|.+|..++..|.+.| .+|.+++++... +.+..+. +.. ..+
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G--------------------~~V~~~d~~~~~--~~a~~~g-v~~----~~~-- 84 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQG--------------------HTVLATSRSDYS--DIAAELG-VSF----FRD-- 84 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCC--------------------CEEEEEECccHH--HHHHHcC-Cee----eCC--
Confidence 45789999999999999999998876 378889988632 3333332 221 222
Q ss_pred HHHHhh-ccccEEEecCCccccHHHHHHH----HHhCCeEEEeecc
Q 001559 652 SLCKCI-SQVEIVISLLPASCHVMVANAC----IEFKKHLVTASYI 692 (1053)
Q Consensus 652 ~l~~~i-~~~DvVI~~~p~~~~~~v~~ac----i~~g~~~vD~sy~ 692 (1053)
+.+++ .++|+||-|+|+.....++... +..++.++|++-.
T Consensus 85 -~~e~~~~~aDvVilavp~~~~~~vl~~l~~~~l~~~~iviDv~Sv 129 (304)
T PLN02256 85 -PDDFCEEHPDVVLLCTSILSTEAVLRSLPLQRLKRSTLFVDVLSV 129 (304)
T ss_pred -HHHHhhCCCCEEEEecCHHHHHHHHHhhhhhccCCCCEEEecCCc
Confidence 33444 4699999999987555554443 4567888898764
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.004 Score=68.04 Aligned_cols=77 Identities=19% Similarity=0.325 Sum_probs=61.6
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC----CceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP----NAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~----~~~~~~~d~ 647 (1053)
..++++|.| +|++|+.+++.|++.| .+|.+.+|+.++.+++.+.+. ++..+.+|+
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~G--------------------~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl 67 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEYG--------------------AEIIINDITAERAELAVAKLRQEGIKAHAAPFNV 67 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcC--------------------CEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 467899999 7999999999999987 378999999887776655432 356678999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+|.+++.++++ ..|+||++++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 96 (254)
T PRK08085 68 THKQEVEAAIEHIEKDIGPIDVLINNAGI 96 (254)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 99988876654 36999999865
|
|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.013 Score=63.40 Aligned_cols=118 Identities=14% Similarity=0.066 Sum_probs=73.4
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH----------HHHHHHHhcCCCc
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL----------KDAEEVIEGIPNA 640 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~----------~~a~~l~~~~~~~ 640 (1053)
+.+.++|+|.|.|.+|+.+++.|.+.|. ..|.|+|.+. +..+...+.. .+
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~-------------------~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~-~~ 79 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGG-------------------KVLAVSDPDGYIYDPGITTEELINYAVALG-GS 79 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCC-------------------EEEEEEcCCCcEECCCCCHHHHHHHHHhhC-Cc
Confidence 4567999999999999999999999872 3688888876 5554443332 12
Q ss_pred eEE-EecCCCHHHHHHhhccccEEEecCCccc-cHHHHHHHHHhCCeEEEeeccChhHHHHHHHHHHcCCeEEec
Q 001559 641 EAV-QLDVSDHKSLCKCISQVEIVISLLPASC-HVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGE 713 (1053)
Q Consensus 641 ~~~-~~d~~d~~~l~~~i~~~DvVI~~~p~~~-~~~v~~aci~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~l~g 713 (1053)
... ..|..+.+.+... +||++|-|++... +... +.+.++.+|--.-+.|-+.+-.+.-+++|+.++++
T Consensus 80 ~~~~~~~~~~~~~l~~~--~~DVlipaA~~~~i~~~~---a~~l~a~~V~e~AN~p~t~~a~~~L~~~Gi~v~Pd 149 (217)
T cd05211 80 ARVKVQDYFPGEAILGL--DVDIFAPCALGNVIDLEN---AKKLKAKVVAEGANNPTTDEALRILHERGIVVAPD 149 (217)
T ss_pred cccCcccccCcccceec--cccEEeeccccCccChhh---HhhcCccEEEeCCCCCCCHHHHHHHHHCCcEEECh
Confidence 111 1122233344332 7999999997543 2222 23344555555544333334455668899998874
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0054 Score=68.78 Aligned_cols=92 Identities=18% Similarity=0.178 Sum_probs=64.8
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
++|.|||+|.+|..++..|.+.| .+|.+++++.+.++++.+.. .+.. ..+ ..
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g--------------------~~V~~~d~~~~~~~~a~~~g-~~~~----~~~--~~- 52 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLG--------------------HTVYGVSRRESTCERAIERG-LVDE----AST--DL- 52 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHCC-Cccc----ccC--CH-
Confidence 47999999999999999999886 37999999988887765531 1110 111 12
Q ss_pred HhhccccEEEecCCccccHHHHHH---HHHhCCeEEEeeccCh
Q 001559 655 KCISQVEIVISLLPASCHVMVANA---CIEFKKHLVTASYIDD 694 (1053)
Q Consensus 655 ~~i~~~DvVI~~~p~~~~~~v~~a---ci~~g~~~vD~sy~~~ 694 (1053)
+.++++|+||.|+|......+.+. .+..++.+.|++.+..
T Consensus 53 ~~~~~aDlVilavp~~~~~~~~~~l~~~l~~~~ii~d~~Svk~ 95 (279)
T PRK07417 53 SLLKDCDLVILALPIGLLLPPSEQLIPALPPEAIVTDVGSVKA 95 (279)
T ss_pred hHhcCCCEEEEcCCHHHHHHHHHHHHHhCCCCcEEEeCcchHH
Confidence 356899999999998765444433 2345677888876543
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0043 Score=68.25 Aligned_cols=79 Identities=15% Similarity=0.182 Sum_probs=61.2
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhc----CC--CceEEE
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEG----IP--NAEAVQ 644 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~----~~--~~~~~~ 644 (1053)
.+.+.++|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+. .+ ++..+.
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAG--------------------ASVAICGRDEERLASAEARLREKFPGARLLAAR 65 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC--------------------CeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEE
Confidence 3467899999 6999999999999987 3789999998877655433 22 355778
Q ss_pred ecCCCHHHHHHhhc-------cccEEEecCCcc
Q 001559 645 LDVSDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 645 ~d~~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+|++|.+++.++++ ..|+||++++..
T Consensus 66 ~D~~~~~~v~~~~~~~~~~~g~id~li~~Ag~~ 98 (265)
T PRK07062 66 CDVLDEADVAAFAAAVEARFGGVDMLVNNAGQG 98 (265)
T ss_pred ecCCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 99999988766554 369999998753
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0065 Score=65.61 Aligned_cols=77 Identities=17% Similarity=0.212 Sum_probs=62.4
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC-CceEEEecCCCH
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NAEAVQLDVSDH 650 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~~~~~~d~~d~ 650 (1053)
+.++++|.| +|++|+.+++.|+++| ..|.+.+|+.++++++....+ ++.++.+|++|.
T Consensus 5 ~~~~vlItGa~g~iG~~la~~l~~~g--------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 64 (245)
T PRK12936 5 SGRKALVTGASGGIGEEIARLLHAQG--------------------AIVGLHGTRVEKLEALAAELGERVKIFPANLSDR 64 (245)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC--------------------CEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCH
Confidence 457899999 7999999999999987 278888899888887765543 467888999998
Q ss_pred HHHHHhhc-------cccEEEecCCc
Q 001559 651 KSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 651 ~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+++.++++ ..|+||++++.
T Consensus 65 ~~~~~~~~~~~~~~~~id~vi~~ag~ 90 (245)
T PRK12936 65 DEVKALGQKAEADLEGVDILVNNAGI 90 (245)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 88776643 47999999865
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0058 Score=67.19 Aligned_cols=77 Identities=19% Similarity=0.278 Sum_probs=61.7
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC---CCceEEEecCC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI---PNAEAVQLDVS 648 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~---~~~~~~~~d~~ 648 (1053)
++++++|.| +|++|+.+++.|++.| .+|.+++|+.++.+++...+ .++..+.+|++
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~ 63 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAG--------------------ARLLLVGRNAEKLEALAARLPYPGRHRWVVADLT 63 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHhcCCceEEEEccCC
Confidence 357899999 7999999999999987 37999999988877665442 24678889999
Q ss_pred CHHHHHHhhc------cccEEEecCCc
Q 001559 649 DHKSLCKCIS------QVEIVISLLPA 669 (1053)
Q Consensus 649 d~~~l~~~i~------~~DvVI~~~p~ 669 (1053)
|.+++.++++ ..|+||++++.
T Consensus 64 d~~~~~~~~~~~~~~~~id~lv~~ag~ 90 (263)
T PRK09072 64 SEAGREAVLARAREMGGINVLINNAGV 90 (263)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 9887766544 46999999865
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0056 Score=66.52 Aligned_cols=77 Identities=21% Similarity=0.286 Sum_probs=60.7
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----C--CceEEEec
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----P--NAEAVQLD 646 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~--~~~~~~~d 646 (1053)
+++++|.| +|++|+.+++.|++.| .+|.+.+|+.++.+++...+ + ++..+.+|
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D 61 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKG--------------------RDLALCARRTDRLEELKAELLARYPGIKVAVAALD 61 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcC--------------------CEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcC
Confidence 46799999 7999999999999887 37899999988877665432 2 35678899
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCcc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
++|.+++.++++ ..|+||++++..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 92 (248)
T PRK08251 62 VNDHDQVFEVFAEFRDELGGLDRVIVNAGIG 92 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 999887766554 479999998653
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0054 Score=66.16 Aligned_cols=75 Identities=24% Similarity=0.275 Sum_probs=60.5
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
+.++|+|+| +|++|+.+++.|++.|. .+|.+++|+.+++++ .-.++.++.+|++|.+
T Consensus 5 ~~~~vlItGgsg~iG~~la~~l~~~G~-------------------~~V~~~~r~~~~~~~---~~~~~~~~~~D~~~~~ 62 (238)
T PRK08264 5 KGKVVLVTGANRGIGRAFVEQLLARGA-------------------AKVYAAARDPESVTD---LGPRVVPLQLDVTDPA 62 (238)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCc-------------------ccEEEEecChhhhhh---cCCceEEEEecCCCHH
Confidence 457899999 79999999999998871 178999999877654 2235778899999998
Q ss_pred HHHHhhc---cccEEEecCCc
Q 001559 652 SLCKCIS---QVEIVISLLPA 669 (1053)
Q Consensus 652 ~l~~~i~---~~DvVI~~~p~ 669 (1053)
++.++++ ..|+||++++.
T Consensus 63 ~~~~~~~~~~~id~vi~~ag~ 83 (238)
T PRK08264 63 SVAAAAEAASDVTILVNNAGI 83 (238)
T ss_pred HHHHHHHhcCCCCEEEECCCc
Confidence 8887776 47999999875
|
|
| >COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0089 Score=65.35 Aligned_cols=129 Identities=19% Similarity=0.117 Sum_probs=79.5
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHH-HHHhc--CCCceEEEecCCCHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAE-EVIEG--IPNAEAVQLDVSDHK 651 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~-~l~~~--~~~~~~~~~d~~d~~ 651 (1053)
++|+++|.|.+|...++.|.+.+.. --|..++++.++.- .+.+. ++..-++ +-.+.+
T Consensus 3 ~~vvqyGtG~vGv~air~l~akpe~------------------elvgawv~s~ak~Gkdlgelagl~dlgV~--a~~~~~ 62 (350)
T COG3804 3 LRVVQYGTGSVGVAAIRGLLAKPEL------------------ELVGAWVHSAAKSGKDLGELAGLPDLGVI--ATNSID 62 (350)
T ss_pred ceeEEeccchHHHHHHHHHHcCCCC------------------ceEEEEecCcccccccHHHhcCCCCceeE--eecccc
Confidence 6799999999999999988877533 14677788766543 22221 2221111 111111
Q ss_pred HHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEee--------ccChhHHHHHHHHHHcCCeEEecCCCChhHHHH
Q 001559 652 SLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTAS--------YIDDSMSKLDEKAKGAGITILGEMGLDPGIDHM 723 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~s--------y~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~m 723 (1053)
..-..+ ..+++.+..-.. ..-.+.|+++|.++|.-. |.++...+.++.|+++|...+.+.|++||..+-
T Consensus 63 avlAtl-~~~~~y~~~~~~--~~~y~rlL~aGiNVv~~g~~l~yPw~~~PelaeKpl~lAaraGn~Tl~gtGI~pGF~~d 139 (350)
T COG3804 63 AVLATL-ADAVIYAPLLPS--VDEYARLLRAGINVVTPGPVLQYPWFYPPELAEKPLELAARAGNATLHGTGIGPGFVTD 139 (350)
T ss_pred cceecc-ccceeeecccch--HHHHHHHHHcCCceeccCccccCCCcCChHHhhchHHHHHhcCCceEEecccCccHHHH
Confidence 111111 223333333111 344678999999999873 234556677789999999899999999996655
Q ss_pred HHH
Q 001559 724 MAM 726 (1053)
Q Consensus 724 la~ 726 (1053)
++-
T Consensus 140 llp 142 (350)
T COG3804 140 LLP 142 (350)
T ss_pred HHH
Confidence 443
|
|
| >PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0079 Score=76.65 Aligned_cols=156 Identities=13% Similarity=0.134 Sum_probs=93.1
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH-------HHHHHHhcCCCceEEEe
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK-------DAEEVIEGIPNAEAVQL 645 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~-------~a~~l~~~~~~~~~~~~ 645 (1053)
+..+|.|+|.|.||+.+++.|.++.. .+..+++.++. -+.|++++.. ....+...+.. ...
T Consensus 457 ~~i~i~l~G~G~VG~~l~~~l~~~~~----~l~~~~g~~~~-----v~~I~~s~~~~~~~~gi~~~~~~~~~~~---~~~ 524 (810)
T PRK09466 457 KRIGLVLFGKGNIGSRWLELFAREQS----TLSARTGFEFV-----LVGVVDSRRSLLNYDGLDASRALAFFDD---EAV 524 (810)
T ss_pred ceEEEEEEecCCChHHHHHHHHHHHH----HHHHhcCCCEE-----EEEEEeCCccccCccCCCHHHHHhhHHh---hcC
Confidence 45789999999999999999976541 22233333332 3556666532 11122211110 001
Q ss_pred cCCCHHHHHHhhcc----ccEEEecCCccccHHHHHHHHHhCCeEEEeecc-----ChhHHHHHHHHHHcCCeEEecCCC
Q 001559 646 DVSDHKSLCKCISQ----VEIVISLLPASCHVMVANACIEFKKHLVTASYI-----DDSMSKLDEKAKGAGITILGEMGL 716 (1053)
Q Consensus 646 d~~d~~~l~~~i~~----~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~-----~~~~~~L~~~Ak~~Gv~~l~g~G~ 716 (1053)
+ .+.+.+.+.+.+ .++||+|++..-.......+++.|+|+|+.+=. .....+|.+.|+++|+.+..++-+
T Consensus 525 ~-~~~~~~~e~i~~~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~VVtaNK~~~a~~~~~~~~l~~~a~~~~~~~~yEasV 603 (810)
T PRK09466 525 E-WDEESLFLWLRAHPYDELVVLDVTASEQLALQYPDFASHGFHVISANKLAGSSPSNFYRQIKDAFAKTGRHWLYNATV 603 (810)
T ss_pred C-ccHHHHHHHHhhcCCCCcEEEECCCChHHHHHHHHHHHcCCEEEcCCcccccccHHHHHHHHHHHHHcCCeEEEecee
Confidence 1 133445555543 359999998543333445899999999998631 145568889999999999977655
Q ss_pred ChhHHHHHHHHHHHHhhhccCceEEEEe
Q 001559 717 DPGIDHMMAMKMINHAHVRKGKIKSFTS 744 (1053)
Q Consensus 717 dPGi~~mla~~~i~~~~~~~~~v~sf~~ 744 (1053)
.-|+.-+- .++.+...+++|.+|+-
T Consensus 604 ~~giPii~---~l~~l~~~gd~i~~i~G 628 (810)
T PRK09466 604 GAGLPINH---TVRDLRNSGDSILAISG 628 (810)
T ss_pred eeccChHH---HHHHHHhccCcEEEEEE
Confidence 44443322 12333334677877763
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0047 Score=66.72 Aligned_cols=78 Identities=29% Similarity=0.440 Sum_probs=61.2
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEE-ECCHHHHHHHHhcC----CCceEEEec
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVA-SLYLKDAEEVIEGI----PNAEAVQLD 646 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~-~r~~~~a~~l~~~~----~~~~~~~~d 646 (1053)
.+++++|+| +|++|+.+++.|++.| .+|.+. +|+.++.+++.+.+ .++.++.+|
T Consensus 4 ~~~~ilI~Gasg~iG~~la~~l~~~g--------------------~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 63 (247)
T PRK05565 4 MGKVAIVTGASGGIGRAIAELLAKEG--------------------AKVVIAYDINEEAAQELLEEIKEEGGDAIAVKAD 63 (247)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC--------------------CEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECC
Confidence 457899999 6999999999999887 377777 99887766655433 236778899
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCcc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
++|.+++.+++. ..|+||++++..
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 94 (247)
T PRK05565 64 VSSEEDVENLVEQIVEKFGKIDILVNNAGIS 94 (247)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEECCCcC
Confidence 999988876665 689999998653
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0062 Score=68.32 Aligned_cols=94 Identities=13% Similarity=0.210 Sum_probs=63.7
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH-HHHHHHHhcCCCceEEEecCCCHHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL-KDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~-~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
+++|.|||+|.+|.+++..|.+.+.. ...+|.+++|+. ++++.+...++.+.. ..+
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~----------------~~~~V~~~~r~~~~~~~~l~~~~~~~~~-------~~~ 57 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVA----------------TPEEIILYSSSKNEHFNQLYDKYPTVEL-------ADN 57 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCC----------------CcccEEEEeCCcHHHHHHHHHHcCCeEE-------eCC
Confidence 46799999999999999999887511 013688888864 455555554432221 122
Q ss_pred HHHhhccccEEEecCCccccHHHHHHH---HHhCCeEEEee
Q 001559 653 LCKCISQVEIVISLLPASCHVMVANAC---IEFKKHLVTAS 690 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~~~~~v~~ac---i~~g~~~vD~s 690 (1053)
..++++++|+||-|+|+.....+...+ +..+++++.+.
T Consensus 58 ~~e~~~~aDvVilavpp~~~~~vl~~l~~~l~~~~~ivS~~ 98 (277)
T PRK06928 58 EAEIFTKCDHSFICVPPLAVLPLLKDCAPVLTPDRHVVSIA 98 (277)
T ss_pred HHHHHhhCCEEEEecCHHHHHHHHHHHHhhcCCCCEEEEEC
Confidence 345667899999999987666665544 45677777765
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0037 Score=72.01 Aligned_cols=77 Identities=26% Similarity=0.212 Sum_probs=59.6
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhc---CCCceEEEecCC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEG---IPNAEAVQLDVS 648 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~---~~~~~~~~~d~~ 648 (1053)
++++|+|.| +|++|+++++.|++.| .+|.+++|+.......... -.++..+.+|++
T Consensus 3 ~~k~ilItGatG~IG~~l~~~L~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~ 62 (349)
T TIGR02622 3 QGKKVLVTGHTGFKGSWLSLWLLELG--------------------AEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIR 62 (349)
T ss_pred CCCEEEEECCCChhHHHHHHHHHHCC--------------------CEEEEEeCCCccchhHHHHHhhcCCceEEEccCC
Confidence 357899999 6999999999999987 3788888876544332221 124667889999
Q ss_pred CHHHHHHhhcc--ccEEEecCCc
Q 001559 649 DHKSLCKCISQ--VEIVISLLPA 669 (1053)
Q Consensus 649 d~~~l~~~i~~--~DvVI~~~p~ 669 (1053)
|.+++.+++++ .|+||+++..
T Consensus 63 ~~~~~~~~~~~~~~d~vih~A~~ 85 (349)
T TIGR02622 63 DAAKLRKAIAEFKPEIVFHLAAQ 85 (349)
T ss_pred CHHHHHHHHhhcCCCEEEECCcc
Confidence 99999998886 5999999863
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0054 Score=71.49 Aligned_cols=78 Identities=17% Similarity=0.099 Sum_probs=62.2
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhc---------CCCce
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEG---------IPNAE 641 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~---------~~~~~ 641 (1053)
.++++|+|.| +|++|+.+++.|++.| .+|.++.|+.++.+.+.+. .+++.
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~G--------------------~~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~ 110 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRHG--------------------YSVRIAVDTQEDKEKLREMEMFGEMGRSNDGIW 110 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHhhhccccccCCceE
Confidence 4578899999 6999999999999987 3788878887666554321 12467
Q ss_pred EEEecCCCHHHHHHhhccccEEEecCCc
Q 001559 642 AVQLDVSDHKSLCKCISQVEIVISLLPA 669 (1053)
Q Consensus 642 ~~~~d~~d~~~l~~~i~~~DvVI~~~p~ 669 (1053)
++.+|++|.+.+.++++++|.|++++..
T Consensus 111 ~v~~Dl~d~~~l~~~i~~~d~V~hlA~~ 138 (367)
T PLN02686 111 TVMANLTEPESLHEAFDGCAGVFHTSAF 138 (367)
T ss_pred EEEcCCCCHHHHHHHHHhccEEEecCee
Confidence 7889999999999999999999987653
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0043 Score=67.02 Aligned_cols=92 Identities=16% Similarity=0.229 Sum_probs=61.2
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC------CceEEEecC
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP------NAEAVQLDV 647 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~------~~~~~~~d~ 647 (1053)
|+|.||| +|.+|..++..|++.+ .+|.+++|+.++++++...+. ++.. .+-.
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G--------------------~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~-~~~~ 59 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG--------------------NKIIIGSRDLEKAEEAAAKALEELGHGGSDI-KVTG 59 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC--------------------CEEEEEEcCHHHHHHHHHHHHhhccccCCCc-eEEE
Confidence 5799997 8999999999999887 278899999998887765321 1100 0111
Q ss_pred CCHHHHHHhhccccEEEecCCccccHHHHHHHHH--hCCeEEEee
Q 001559 648 SDHKSLCKCISQVEIVISLLPASCHVMVANACIE--FKKHLVTAS 690 (1053)
Q Consensus 648 ~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~--~g~~~vD~s 690 (1053)
+ ...+.++++|+||-++|+.....+...... .++.++|++
T Consensus 60 ~---~~~ea~~~aDvVilavp~~~~~~~l~~l~~~l~~~vvI~~~ 101 (219)
T TIGR01915 60 A---DNAEAAKRADVVILAVPWDHVLKTLESLRDELSGKLVISPV 101 (219)
T ss_pred e---ChHHHHhcCCEEEEECCHHHHHHHHHHHHHhccCCEEEEec
Confidence 1 224567789999999998765544432211 234556654
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0051 Score=67.42 Aligned_cols=79 Identities=22% Similarity=0.284 Sum_probs=62.1
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEec
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLD 646 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d 646 (1053)
.+.++++|.| +|++|+.+++.|++.| .+|.+++|+.++.+.+...+ .++..+.+|
T Consensus 10 ~~~k~ilItGa~g~IG~~la~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D 69 (259)
T PRK08213 10 LSGKTALVTGGSRGLGLQIAEALGEAG--------------------ARVVLSARKAEELEEAAAHLEALGIDALWIAAD 69 (259)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 3468899999 7999999999999987 37899999988776655432 246678999
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCcc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
++|.+++.++++ ..|+||++++..
T Consensus 70 l~d~~~i~~~~~~~~~~~~~id~vi~~ag~~ 100 (259)
T PRK08213 70 VADEADIERLAEETLERFGHVDILVNNAGAT 100 (259)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 999988865554 479999998753
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0061 Score=67.60 Aligned_cols=77 Identities=12% Similarity=0.141 Sum_probs=58.6
Q ss_pred CCCeEEEEcCc---hhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH---HHHHHHHhcCCCceEEEec
Q 001559 573 GTSSVLIIGAG---RVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL---KDAEEVIEGIPNAEAVQLD 646 (1053)
Q Consensus 573 ~~~~VlIiGaG---~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~---~~a~~l~~~~~~~~~~~~d 646 (1053)
+.+.++|.|++ ++|+++|+.|++.| .+|.+.+|+. +.++++....+.+..+.+|
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G--------------------~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~D 64 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREG--------------------AELAFTYQNDKLKGRVEEFAAQLGSDIVLPCD 64 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCC--------------------CEEEEEecchhHHHHHHHHHhccCCceEeecC
Confidence 35779999974 79999999999988 2788888873 3445555545556678899
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++|.+++.++++ ..|++||+++.
T Consensus 65 l~~~~~v~~~~~~~~~~~g~iD~linnAg~ 94 (262)
T PRK07984 65 VAEDASIDAMFAELGKVWPKFDGFVHSIGF 94 (262)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCEEEECCcc
Confidence 999988876654 36999999875
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0052 Score=68.50 Aligned_cols=75 Identities=23% Similarity=0.312 Sum_probs=58.1
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC----CceEEEecCCCH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP----NAEAVQLDVSDH 650 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~----~~~~~~~d~~d~ 650 (1053)
+.++|-|+|++|+.+++.|+ .| .+|.+++|+.++++++.+.+. ++..+.+|++|.
T Consensus 3 k~~lItGa~gIG~~la~~l~-~G--------------------~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~ 61 (275)
T PRK06940 3 EVVVVIGAGGIGQAIARRVG-AG--------------------KKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSR 61 (275)
T ss_pred CEEEEECCChHHHHHHHHHh-CC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCH
Confidence 45677789999999999996 55 378999999887766654432 466788999999
Q ss_pred HHHHHhhc------cccEEEecCCcc
Q 001559 651 KSLCKCIS------QVEIVISLLPAS 670 (1053)
Q Consensus 651 ~~l~~~i~------~~DvVI~~~p~~ 670 (1053)
+++.++++ ..|+||++++..
T Consensus 62 ~~i~~~~~~~~~~g~id~li~nAG~~ 87 (275)
T PRK06940 62 ESVKALAATAQTLGPVTGLVHTAGVS 87 (275)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 88876664 479999998753
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0048 Score=70.88 Aligned_cols=75 Identities=21% Similarity=0.170 Sum_probs=58.2
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH-----HHHHHHhcC-----CCceEE
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK-----DAEEVIEGI-----PNAEAV 643 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~-----~a~~l~~~~-----~~~~~~ 643 (1053)
++|+|.| +|++|+.+++.|++.| .+|.+++|+.+ +.+.+.+.. ++++.+
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKG--------------------YEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLH 60 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCC--------------------CEEEEEecCCcccchhhhhhhhhccccccccceeEE
Confidence 4799999 6999999999999887 37888888743 333332221 247788
Q ss_pred EecCCCHHHHHHhhcc--ccEEEecCCc
Q 001559 644 QLDVSDHKSLCKCISQ--VEIVISLLPA 669 (1053)
Q Consensus 644 ~~d~~d~~~l~~~i~~--~DvVI~~~p~ 669 (1053)
.+|++|.+.+.+++++ +|+||+++..
T Consensus 61 ~~Dl~d~~~l~~~~~~~~~d~ViH~Aa~ 88 (343)
T TIGR01472 61 YGDLTDSSNLRRIIDEIKPTEIYNLAAQ 88 (343)
T ss_pred EeccCCHHHHHHHHHhCCCCEEEECCcc
Confidence 9999999999999885 5999999864
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0082 Score=70.84 Aligned_cols=79 Identities=16% Similarity=0.218 Sum_probs=62.7
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC-CCceEEEecCCC
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI-PNAEAVQLDVSD 649 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~-~~~~~~~~d~~d 649 (1053)
.++++|+|.| +|++|+++++.|++.| .+|.+++|+.++.++..... .++..+.+|++|
T Consensus 176 l~gK~VLITGASgGIG~aLA~~La~~G--------------------~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd 235 (406)
T PRK07424 176 LKGKTVAVTGASGTLGQALLKELHQQG--------------------AKVVALTSNSDKITLEINGEDLPVKTLHWQVGQ 235 (406)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCC
Confidence 3568899999 6999999999999887 37888899877665433221 235678899999
Q ss_pred HHHHHHhhccccEEEecCCcc
Q 001559 650 HKSLCKCISQVEIVISLLPAS 670 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~~ 670 (1053)
.+++.+.+.+.|++|++++..
T Consensus 236 ~~~v~~~l~~IDiLInnAGi~ 256 (406)
T PRK07424 236 EAALAELLEKVDILIINHGIN 256 (406)
T ss_pred HHHHHHHhCCCCEEEECCCcC
Confidence 999999899999999988653
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0026 Score=74.35 Aligned_cols=97 Identities=18% Similarity=0.229 Sum_probs=65.6
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
..++||+|+| +|++|+.+++.|.+++. .+|+.+.++...-+.+....+... ..|..+.
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~-------------------~el~~l~s~~saG~~i~~~~~~l~--~~~~~~~ 94 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPD-------------------FEITVMTADRKAGQSFGSVFPHLI--TQDLPNL 94 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCC-------------------CeEEEEEChhhcCCCchhhCcccc--Cccccce
Confidence 3567999999 69999999999999863 477777765443333333333211 1222212
Q ss_pred HHHH-HhhccccEEEecCCccccHHHHHHHHHhCCeEEEee
Q 001559 651 KSLC-KCISQVEIVISLLPASCHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 651 ~~l~-~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~s 690 (1053)
+++. +.++++|+|+.++|......++.+ ++.|+.+||+|
T Consensus 95 ~~~~~~~~~~~DvVf~Alp~~~s~~i~~~-~~~g~~VIDlS 134 (381)
T PLN02968 95 VAVKDADFSDVDAVFCCLPHGTTQEIIKA-LPKDLKIVDLS 134 (381)
T ss_pred ecCCHHHhcCCCEEEEcCCHHHHHHHHHH-HhCCCEEEEcC
Confidence 2222 224789999999999877777776 47889999998
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0073 Score=69.07 Aligned_cols=110 Identities=9% Similarity=0.099 Sum_probs=67.4
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC---------Cc--eE
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP---------NA--EA 642 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~---------~~--~~ 642 (1053)
.++|.|||+|.||+.+|..++..| .+|.+.|++++.+++..+.+. +. ..
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG--------------------~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 66 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHG--------------------LDVVAWDPAPGAEAALRANVANAWPALERQGLAPGA 66 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCC--------------------CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhh
Confidence 468999999999999999999887 489999999876654332110 00 00
Q ss_pred EEecCCCHHHHHHhhccccEEEecCCcccc--HHHH---HHHHHhCCeEEEeeccChhHHHHHHHHH
Q 001559 643 VQLDVSDHKSLCKCISQVEIVISLLPASCH--VMVA---NACIEFKKHLVTASYIDDSMSKLDEKAK 704 (1053)
Q Consensus 643 ~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~--~~v~---~aci~~g~~~vD~sy~~~~~~~L~~~Ak 704 (1053)
..-.++-..++.+.++++|+||.++|-... ..+. .+....++ +++.+..+-...++.+.++
T Consensus 67 ~~~~i~~~~~l~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~l~~s~la~~~~ 132 (321)
T PRK07066 67 SPARLRFVATIEACVADADFIQESAPEREALKLELHERISRAAKPDA-IIASSTSGLLPTDFYARAT 132 (321)
T ss_pred HHhhceecCCHHHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCe-EEEECCCccCHHHHHHhcC
Confidence 000011123467888999999999997653 1222 22334444 5555443434445544443
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.004 Score=70.87 Aligned_cols=75 Identities=25% Similarity=0.269 Sum_probs=56.5
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
+++|.|||+|.+|++++..|++.| .+|.+++|+.. .++
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G--------------------~~V~~~~r~~~----------------------~~~ 41 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANG--------------------HRVRVWSRRSG----------------------LSL 41 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCC--------------------CEEEEEeCCCC----------------------CCH
Confidence 478999999999999999999887 37999999742 134
Q ss_pred HHhhccccEEEecCCccccHHHHHHH----HHhCCeEEEee
Q 001559 654 CKCISQVEIVISLLPASCHVMVANAC----IEFKKHLVTAS 690 (1053)
Q Consensus 654 ~~~i~~~DvVI~~~p~~~~~~v~~ac----i~~g~~~vD~s 690 (1053)
.+.++++|+||.++|......+.... +..++.+++++
T Consensus 42 ~~~~~~advvi~~vp~~~~~~v~~~l~~~~~~~~~ivi~~s 82 (308)
T PRK14619 42 AAVLADADVIVSAVSMKGVRPVAEQVQALNLPPETIIVTAT 82 (308)
T ss_pred HHHHhcCCEEEEECChHHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 56678999999999976444444332 33456677765
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.011 Score=70.18 Aligned_cols=108 Identities=15% Similarity=0.149 Sum_probs=66.3
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
+++|.|||+|.+|.++|..|++.| .+|.++|++.++.+++...... .... +.+.+
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G--------------------~~V~~~D~~~~~v~~l~~g~~~--~~e~---~l~~~ 57 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQ--------------------KQVIGVDINQHAVDTINRGEIH--IVEP---DLDMV 57 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCC--------------------CEEEEEeCCHHHHHHHHCCCCC--cCCC---CHHHH
Confidence 478999999999999999999987 3899999999998876543211 1000 11111
Q ss_pred -HH-----------hhccccEEEecCCccc----------cHHHH---HHHHHhCCeEEEeeccChh-HHHHHHHHHHc
Q 001559 654 -CK-----------CISQVEIVISLLPASC----------HVMVA---NACIEFKKHLVTASYIDDS-MSKLDEKAKGA 706 (1053)
Q Consensus 654 -~~-----------~i~~~DvVI~~~p~~~----------~~~v~---~aci~~g~~~vD~sy~~~~-~~~L~~~Ak~~ 706 (1053)
.+ .++++|+||-|+|... ...+. ...++.|+.+|+.|.+++. ++++....++.
T Consensus 58 l~~~~~~g~l~~~~~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~ 136 (415)
T PRK11064 58 VKTAVEGGYLRATTTPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEA 136 (415)
T ss_pred HHHHhhcCceeeecccccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence 11 1347999999999752 11111 1223456667777665443 33443333333
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0081 Score=66.40 Aligned_cols=76 Identities=21% Similarity=0.252 Sum_probs=60.9
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecCCC
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDVSD 649 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~~d 649 (1053)
++|+|.| +|++|+.+++.|++.| .+|.+.+|+.++++++...+ .++..+.+|++|
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g--------------------~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~ 60 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREG--------------------WRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRD 60 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCC
Confidence 4689999 6999999999999987 37899999988877665432 346778899999
Q ss_pred HHHHHHhhc-------cccEEEecCCcc
Q 001559 650 HKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 650 ~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
.+++.++++ ..|+||++++..
T Consensus 61 ~~~~~~~~~~i~~~~~~id~lI~~ag~~ 88 (270)
T PRK05650 61 YSQLTALAQACEEKWGGIDVIVNNAGVA 88 (270)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 888776664 579999998753
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.006 Score=66.79 Aligned_cols=77 Identities=21% Similarity=0.211 Sum_probs=59.9
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC------CCceEEEec
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI------PNAEAVQLD 646 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~------~~~~~~~~d 646 (1053)
.++|+|.| +|++|+.+++.|++.| .+|.+++|+..+.+++.+.+ .++..+.+|
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g--------------------~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D 61 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEG--------------------YRVAVADINSEKAANVAQEINAEYGEGMAYGFGAD 61 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEcc
Confidence 35799999 6999999999999987 37889999987766655432 246788999
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCcc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
++|.+++..++. ..|+||++++..
T Consensus 62 ~~~~~~i~~~~~~~~~~~~~id~vv~~ag~~ 92 (259)
T PRK12384 62 ATSEQSVLALSRGVDEIFGRVDLLVYNAGIA 92 (259)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 999887776654 469999998643
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0068 Score=66.54 Aligned_cols=76 Identities=22% Similarity=0.277 Sum_probs=60.2
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecCCC
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDVSD 649 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~~d 649 (1053)
++|+|.| +|++|+.+++.|++.+ .+|.+++|+..+.+++.+.+ .++..+.+|++|
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g--------------------~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~ 61 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAG--------------------AQLVLAARNETRLASLAQELADHGGEALVVPTDVSD 61 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC
Confidence 5799999 6999999999999887 37999999987776655432 246678899999
Q ss_pred HHHHHHhhc-------cccEEEecCCcc
Q 001559 650 HKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 650 ~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
.+++.+++. ..|+||+++...
T Consensus 62 ~~~~~~~~~~~~~~~~~id~vi~~ag~~ 89 (263)
T PRK06181 62 AEACERLIEAAVARFGGIDILVNNAGIT 89 (263)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCcc
Confidence 988877665 579999998653
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0098 Score=66.67 Aligned_cols=76 Identities=17% Similarity=0.284 Sum_probs=55.9
Q ss_pred eEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH--HHHHHHHh--cCCCceEEEecCCCH
Q 001559 576 SVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL--KDAEEVIE--GIPNAEAVQLDVSDH 650 (1053)
Q Consensus 576 ~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~--~~a~~l~~--~~~~~~~~~~d~~d~ 650 (1053)
+|+|.| +|++|+.+++.|.+.+. +.+|.+.+|.. .+.+.+.. ..++++++.+|++|.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~------------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~ 62 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHP------------------DAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDR 62 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCC------------------CCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCH
Confidence 589999 69999999999988752 13677777631 12222221 123577888999999
Q ss_pred HHHHHhhcc--ccEEEecCCc
Q 001559 651 KSLCKCISQ--VEIVISLLPA 669 (1053)
Q Consensus 651 ~~l~~~i~~--~DvVI~~~p~ 669 (1053)
+++.+++++ +|+||+++..
T Consensus 63 ~~~~~~~~~~~~d~vi~~a~~ 83 (317)
T TIGR01181 63 ELVSRLFTEHQPDAVVHFAAE 83 (317)
T ss_pred HHHHHHHhhcCCCEEEEcccc
Confidence 999999887 8999999964
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0085 Score=65.49 Aligned_cols=78 Identities=23% Similarity=0.338 Sum_probs=62.0
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEec
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLD 646 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d 646 (1053)
...++++|.| +|++|+.+++.|++.| .+|.+++|+.+.++++.+.+ .++..+.+|
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 68 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAG--------------------AHVLVNGRNAATLEAAVAALRAAGGAAEALAFD 68 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcC--------------------CeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcc
Confidence 4578899999 6999999999999887 38999999988776665432 246788999
Q ss_pred CCCHHHHHHhhcc-------ccEEEecCCc
Q 001559 647 VSDHKSLCKCISQ-------VEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~~-------~DvVI~~~p~ 669 (1053)
++|.+++.+++++ .|+||++++.
T Consensus 69 l~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 98 (256)
T PRK06124 69 IADEEAVAAAFARIDAEHGRLDILVNNVGA 98 (256)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 9998887766553 5899999865
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.016 Score=63.50 Aligned_cols=131 Identities=19% Similarity=0.270 Sum_probs=81.9
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH-----HHHHHHhcCCCceEEEecC
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK-----DAEEVIEGIPNAEAVQLDV 647 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~-----~a~~l~~~~~~~~~~~~d~ 647 (1053)
++||+|.| +|+||+.+++.+.+.+++ .-+..++|... .+.+++. .. ...+.+
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~------------------~L~aa~~~~~~~~~g~d~ge~~g-~~---~~gv~v 59 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDL------------------ELVAAFDRPGSLSLGSDAGELAG-LG---LLGVPV 59 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCc------------------eEEEEEecCCccccccchhhhcc-cc---ccCcee
Confidence 57899999 599999999999887643 13556676543 2233321 11 111122
Q ss_pred CCHHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEE-ee-ccChhHHHHHHHHHHcCCeEEecCCCChhHHHHHH
Q 001559 648 SDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVT-AS-YIDDSMSKLDEKAKGAGITILGEMGLDPGIDHMMA 725 (1053)
Q Consensus 648 ~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD-~s-y~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla 725 (1053)
++ ++.....++|++|+.+-+......++.|+++++.+|- .+ +.+++...|.+.+++.++.+-+ -|.=|+. +.
T Consensus 60 ~~--~~~~~~~~~DV~IDFT~P~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~v~vv~a~--NfSiGvn--ll 133 (266)
T COG0289 60 TD--DLLLVKADADVLIDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEKVPVVIAP--NFSLGVN--LL 133 (266)
T ss_pred ec--chhhcccCCCEEEECCCchhhHHHHHHHHHcCCCeEEECCCCCHHHHHHHHHHHhhCCEEEec--cchHHHH--HH
Confidence 22 2555667899999999776667788899999987553 33 5556666787777775544444 4444543 33
Q ss_pred HHHHHHh
Q 001559 726 MKMINHA 732 (1053)
Q Consensus 726 ~~~i~~~ 732 (1053)
++++.++
T Consensus 134 ~~l~~~a 140 (266)
T COG0289 134 FKLAEQA 140 (266)
T ss_pred HHHHHHH
Confidence 4445444
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0076 Score=67.30 Aligned_cols=77 Identities=16% Similarity=0.198 Sum_probs=58.6
Q ss_pred CCCeEEEEcC---chhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH---HHHHHHHhcCCCceEEEec
Q 001559 573 GTSSVLIIGA---GRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL---KDAEEVIEGIPNAEAVQLD 646 (1053)
Q Consensus 573 ~~~~VlIiGa---G~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~---~~a~~l~~~~~~~~~~~~d 646 (1053)
+.+.++|.|+ +++|+++|+.|++.| .+|.+++|+. ++++++.+.++....+++|
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G--------------------~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~D 63 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQG--------------------AELAFTYLNEALKKRVEPIAQELGSDYVYELD 63 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCC--------------------CEEEEEecCHHHHHHHHHHHHhcCCceEEEec
Confidence 3578999996 599999999999987 3788889884 3455555554432568899
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++|.+++.++++ ..|++||+++.
T Consensus 64 v~d~~~v~~~~~~i~~~~g~iDilVnnAG~ 93 (274)
T PRK08415 64 VSKPEHFKSLAESLKKDLGKIDFIVHSVAF 93 (274)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 999988766554 36999999875
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0036 Score=66.05 Aligned_cols=125 Identities=18% Similarity=0.278 Sum_probs=77.5
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCce----------EE-
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAE----------AV- 643 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~----------~~- 643 (1053)
|+|.|+|+|++|.+.|-.|++.| .+|..+|.+.++.+.+.+....+. ..
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G--------------------~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~ 60 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKG--------------------HQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVS 60 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTT--------------------SEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHH
T ss_pred CEEEEECCCcchHHHHHHHHhCC--------------------CEEEEEeCChHHHHHHhhccccccccchhhhhccccc
Confidence 68999999999999999999998 389999999999998876532110 00
Q ss_pred --EecCCCHHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeeccChhHHHHHHHHHHcCCeEEecCCCChhHH
Q 001559 644 --QLDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGEMGLDPGID 721 (1053)
Q Consensus 644 --~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~ 721 (1053)
.+-. ..+..+.++++|+++-|+|..... ..-.|++|.......+. ...+.|..++...=+.||..
T Consensus 61 ~~~l~~--t~~~~~ai~~adv~~I~VpTP~~~----------~~~~Dls~v~~a~~~i~-~~l~~~~lvV~~STvppGtt 127 (185)
T PF03721_consen 61 AGRLRA--TTDIEEAIKDADVVFICVPTPSDE----------DGSPDLSYVESAIESIA-PVLRPGDLVVIESTVPPGTT 127 (185)
T ss_dssp TTSEEE--ESEHHHHHHH-SEEEE----EBET----------TTSBETHHHHHHHHHHH-HHHCSCEEEEESSSSSTTHH
T ss_pred cccchh--hhhhhhhhhccceEEEecCCCccc----------cCCccHHHHHHHHHHHH-HHHhhcceEEEccEEEEeee
Confidence 0001 122345577889999999866542 23356666554555554 34455888899999999988
Q ss_pred HHHHHHHHHHh
Q 001559 722 HMMAMKMINHA 732 (1053)
Q Consensus 722 ~mla~~~i~~~ 732 (1053)
.=+...++++.
T Consensus 128 ~~~~~~ile~~ 138 (185)
T PF03721_consen 128 EELLKPILEKR 138 (185)
T ss_dssp HHHHHHHHHHH
T ss_pred hHhhhhhhhhh
Confidence 85555555543
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0061 Score=66.62 Aligned_cols=73 Identities=16% Similarity=0.181 Sum_probs=57.7
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
+.++++|.| +|++|+.+++.|++.| .+|.+++|+.++ . ....++..+++|++|.+
T Consensus 5 ~~k~~lItGas~gIG~~la~~l~~~g--------------------~~v~~~~r~~~~--~--~~~~~~~~~~~D~~~~~ 60 (252)
T PRK07856 5 TGRVVLVTGGTRGIGAGIARAFLAAG--------------------ATVVVCGRRAPE--T--VDGRPAEFHAADVRDPD 60 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC--------------------CEEEEEeCChhh--h--hcCCceEEEEccCCCHH
Confidence 467899999 7999999999999987 378999998754 1 11234678899999988
Q ss_pred HHHHhhcc-------ccEEEecCCc
Q 001559 652 SLCKCISQ-------VEIVISLLPA 669 (1053)
Q Consensus 652 ~l~~~i~~-------~DvVI~~~p~ 669 (1053)
++.+++++ .|+||++++.
T Consensus 61 ~~~~~~~~~~~~~~~id~vi~~ag~ 85 (252)
T PRK07856 61 QVAALVDAIVERHGRLDVLVNNAGG 85 (252)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 88777654 4999999864
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0073 Score=66.57 Aligned_cols=78 Identities=17% Similarity=0.242 Sum_probs=59.2
Q ss_pred CCCCeEEEEcCc---hhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH---HHHHHHhcCCCceEEEe
Q 001559 572 KGTSSVLIIGAG---RVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK---DAEEVIEGIPNAEAVQL 645 (1053)
Q Consensus 572 ~~~~~VlIiGaG---~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~---~a~~l~~~~~~~~~~~~ 645 (1053)
.+.+.++|.|++ ++|+++|+.|++.| .+|.+++|+.+ .++++.+.++.+.++.+
T Consensus 8 ~~~k~~lItGas~g~GIG~a~a~~la~~G--------------------~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~ 67 (258)
T PRK07533 8 LAGKRGLVVGIANEQSIAWGCARAFRALG--------------------AELAVTYLNDKARPYVEPLAEELDAPIFLPL 67 (258)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcC--------------------CEEEEEeCChhhHHHHHHHHHhhccceEEec
Confidence 346789999953 89999999999987 37888888853 34555555555567889
Q ss_pred cCCCHHHHHHhhc-------cccEEEecCCc
Q 001559 646 DVSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 646 d~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
|++|.+++.+++. ..|++||+++.
T Consensus 68 D~~~~~~v~~~~~~~~~~~g~ld~lv~nAg~ 98 (258)
T PRK07533 68 DVREPGQLEAVFARIAEEWGRLDFLLHSIAF 98 (258)
T ss_pred CcCCHHHHHHHHHHHHHHcCCCCEEEEcCcc
Confidence 9999888766543 36999999864
|
|
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0052 Score=71.89 Aligned_cols=94 Identities=10% Similarity=0.076 Sum_probs=69.2
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCC-CCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC----Cc-eEEEec
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFG-SPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP----NA-EAVQLD 646 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~----~~-~~~~~d 646 (1053)
..++++|||+|..|+..++.++... .+ .+|.|++|++++++++++.+. ++ ++..+
T Consensus 154 da~~l~iiG~G~QA~~~l~a~~~v~~~i------------------~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~- 214 (379)
T PRK06199 154 DSKVVGLLGPGVMGKTILAAFMAVCPGI------------------DTIKIKGRGQKSLDSFATWVAETYPQITNVEVV- 214 (379)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCc------------------cEEEEECCCHHHHHHHHHHHHHhcCCCceEEEe-
Confidence 4578999999999999999987632 12 389999999999998887653 22 23222
Q ss_pred CCCHHHHHHhhccccEEEecCCccc-----cHHHHHHHHHhCCeEEEe
Q 001559 647 VSDHKSLCKCISQVEIVISLLPASC-----HVMVANACIEFKKHLVTA 689 (1053)
Q Consensus 647 ~~d~~~l~~~i~~~DvVI~~~p~~~-----~~~v~~aci~~g~~~vD~ 689 (1053)
++..++++++|||+.||+... .+-+....++.|+|+.-+
T Consensus 215 ----~s~~eav~~ADIVvtaT~s~~~~~s~~Pv~~~~~lkpG~hv~~i 258 (379)
T PRK06199 215 ----DSIEEVVRGSDIVTYCNSGETGDPSTYPYVKREWVKPGAFLLMP 258 (379)
T ss_pred ----CCHHHHHcCCCEEEEccCCCCCCCCcCcEecHHHcCCCcEEecC
Confidence 346788899999999997432 133345578899998644
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.011 Score=64.85 Aligned_cols=72 Identities=25% Similarity=0.200 Sum_probs=65.1
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
++|+|+| +|.+|+.+++.|.+.+ .+|.++.|+.+++..+. .+++....|..+...+
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~--------------------~~v~~~~r~~~~~~~~~---~~v~~~~~d~~~~~~l 57 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARG--------------------HEVRAAVRNPEAAAALA---GGVEVVLGDLRDPKSL 57 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCC--------------------CEEEEEEeCHHHHHhhc---CCcEEEEeccCCHhHH
Confidence 5799999 7999999999999987 38999999999988876 6788999999999999
Q ss_pred HHhhccccEEEecCCc
Q 001559 654 CKCISQVEIVISLLPA 669 (1053)
Q Consensus 654 ~~~i~~~DvVI~~~p~ 669 (1053)
...++++|.++.+.+.
T Consensus 58 ~~a~~G~~~~~~i~~~ 73 (275)
T COG0702 58 VAGAKGVDGVLLISGL 73 (275)
T ss_pred HHHhccccEEEEEecc
Confidence 9999999999999884
|
|
| >COG5310 Homospermidine synthase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0087 Score=66.42 Aligned_cols=195 Identities=17% Similarity=0.217 Sum_probs=118.6
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH--
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS-- 652 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~-- 652 (1053)
-.|++||.|-+|+-..-.+.++-.+ ...+++|+|-..+..+.+.+. ++++++-.+ +.++
T Consensus 14 gpIimIGfGSigrgTLPLierhf~~----------------d~~~~~viDp~ek~~k~~~~~--girfV~e~i-t~~Nyk 74 (481)
T COG5310 14 GPIIMIGFGSIGRGTLPLIERHFKF----------------DRSRMVVIDPREKDRKILDER--GIRFVQEAI-TRDNYK 74 (481)
T ss_pred CcEEEEeecccccccchhHHHhcCC----------------ChhheEEechhHHHHHHHHhh--hhHHHHHhc-ChhhHH
Confidence 3599999999999998888776543 134788888766444444332 344433333 2333
Q ss_pred --HHHhhcc---ccEEEecCCccccHHHHHHHHHhCCeEEEeec-------cChhHH------------HHHHHHHHc-C
Q 001559 653 --LCKCISQ---VEIVISLLPASCHVMVANACIEFKKHLVTASY-------IDDSMS------------KLDEKAKGA-G 707 (1053)
Q Consensus 653 --l~~~i~~---~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy-------~~~~~~------------~L~~~Ak~~-G 707 (1053)
|..++++ --.+||+.=..-...+++-|-+.|+.|||.+. .+..+. .+.++.++- |
T Consensus 75 ~vL~pll~~~~gqgf~vnLSvd~~s~Dlmr~crk~~vLYidTvVEpW~gfyfDa~adn~artnyaLRet~lrEk~r~pgg 154 (481)
T COG5310 75 DVLKPLLKGVGGQGFCVNLSVDTSSLDLMRLCRKHGVLYIDTVVEPWLGFYFDAQADNAARTNYALRETVLREKRRNPGG 154 (481)
T ss_pred HHHHHHhhcCCCceEEEEeEeccchhHHHHHHHHcCeEEEeeeeccccccchhhhhhhhhhhhHHHHHHHHHHhccCCCC
Confidence 3445554 56777775433446889999999999999973 221111 233334443 5
Q ss_pred CeEEecCCCChhHHHHHHHHHHHHhhhc---------------------cCceEEEEeec---cCCCCCCCCCCcccccc
Q 001559 708 ITILGEMGLDPGIDHMMAMKMINHAHVR---------------------KGKIKSFTSYC---GGLPSPAAANNPLAYKF 763 (1053)
Q Consensus 708 v~~l~g~G~dPGi~~mla~~~i~~~~~~---------------------~~~v~sf~~~~---Gg~p~p~~~~~pl~yk~ 763 (1053)
-+.+..||..||+...++.+++=.+... .-.|+.+++-- -+.+.| .++-++-=
T Consensus 155 ~TaVs~cGANPGmvswFVKqaLvdlAad~~ld~~ep~~ddr~gwAkLmkK~GVkgiHiaeRdTqra~~P---kp~n~fwn 231 (481)
T COG5310 155 PTAVSTCGANPGMVSWFVKQALVDLAADLGLDFEEPAQDDREGWAKLMKKAGVKGIHIAERDTQRAKKP---KPFNGFWN 231 (481)
T ss_pred CeeeeecCCCchHHHHHHHHHHHHHHHHhCcCccCCcchhhHHHHHHHHHcCCceEEEEeeccccCCCC---CCCccccc
Confidence 6788999999999988888844222111 01133333211 111222 22333333
Q ss_pred ccCHHHHHHhccCCceEEECCEEEEecC
Q 001559 764 SWSPAGAIRAGRNPAIYLFNGKTVQVDG 791 (1053)
Q Consensus 764 swsp~~~l~~~~~pa~~~~~G~~~~v~~ 791 (1053)
+||.++.+.+...|++...+---...|.
T Consensus 232 tWsveGfi~EG~qPaElgWGtHenw~pk 259 (481)
T COG5310 232 TWSVEGFITEGLQPAELGWGTHENWMPK 259 (481)
T ss_pred ceeeeeeccCCCChhhhccCCccccCCc
Confidence 8999999999999998877665555554
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0069 Score=63.79 Aligned_cols=77 Identities=18% Similarity=0.236 Sum_probs=66.1
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
+-.|||-| +-++|..+|+.+.+.| -+|.|++|+.+++++.....|.+....+|+.|.++
T Consensus 5 gnTiLITGG~sGIGl~lak~f~elg--------------------N~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d~~~ 64 (245)
T COG3967 5 GNTILITGGASGIGLALAKRFLELG--------------------NTVIICGRNEERLAEAKAENPEIHTEVCDVADRDS 64 (245)
T ss_pred CcEEEEeCCcchhhHHHHHHHHHhC--------------------CEEEEecCcHHHHHHHHhcCcchheeeecccchhh
Confidence 34589987 7899999999999987 38999999999999999999999999999999887
Q ss_pred HHHhhc-------cccEEEecCCcc
Q 001559 653 LCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 653 l~~~i~-------~~DvVI~~~p~~ 670 (1053)
.++++. ..+++||+++.-
T Consensus 65 ~~~lvewLkk~~P~lNvliNNAGIq 89 (245)
T COG3967 65 RRELVEWLKKEYPNLNVLINNAGIQ 89 (245)
T ss_pred HHHHHHHHHhhCCchheeeeccccc
Confidence 666554 369999999864
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0062 Score=66.97 Aligned_cols=78 Identities=19% Similarity=0.266 Sum_probs=60.5
Q ss_pred CCCCeEEEEcC-c-hhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhc----CC--CceEE
Q 001559 572 KGTSSVLIIGA-G-RVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEG----IP--NAEAV 643 (1053)
Q Consensus 572 ~~~~~VlIiGa-G-~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~----~~--~~~~~ 643 (1053)
.+.++++|.|+ | ++|+.+++.|++.| .+|.+.+|+.++.++..+. ++ ++..+
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G--------------------~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEG--------------------ARVVISDIHERRLGETADELAAELGLGRVEAV 74 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcC--------------------CEEEEEeCCHHHHHHHHHHHHHhcCCceEEEE
Confidence 34678999995 6 79999999999987 3788999988776655443 22 36678
Q ss_pred EecCCCHHHHHHhhc-------cccEEEecCCc
Q 001559 644 QLDVSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 644 ~~d~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
.+|+++.+++.++++ ..|+||++++.
T Consensus 75 ~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ag~ 107 (262)
T PRK07831 75 VCDVTSEAQVDALIDAAVERLGRLDVLVNNAGL 107 (262)
T ss_pred EccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 899999887776654 46999999874
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.012 Score=67.55 Aligned_cols=77 Identities=22% Similarity=0.212 Sum_probs=57.5
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH----HHHHHHhc----CCCceEE
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK----DAEEVIEG----IPNAEAV 643 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~----~a~~l~~~----~~~~~~~ 643 (1053)
++++|+|.| +|++|+.+++.|++.+ .+|++.+|... ..+++... .++++.+
T Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g--------------------~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (352)
T PLN02240 4 MGRTILVTGGAGYIGSHTVLQLLLAG--------------------YKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFH 63 (352)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC--------------------CEEEEEeCCCcchHHHHHHHHHhhcccCccceEE
Confidence 457899999 6999999999999887 37888876421 12222221 1357788
Q ss_pred EecCCCHHHHHHhhc--cccEEEecCCc
Q 001559 644 QLDVSDHKSLCKCIS--QVEIVISLLPA 669 (1053)
Q Consensus 644 ~~d~~d~~~l~~~i~--~~DvVI~~~p~ 669 (1053)
.+|++|.+.+.++++ ++|+||+++..
T Consensus 64 ~~D~~~~~~l~~~~~~~~~d~vih~a~~ 91 (352)
T PLN02240 64 KVDLRDKEALEKVFASTRFDAVIHFAGL 91 (352)
T ss_pred ecCcCCHHHHHHHHHhCCCCEEEEcccc
Confidence 899999999988876 58999999864
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0076 Score=66.11 Aligned_cols=77 Identities=17% Similarity=0.219 Sum_probs=58.7
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHH---hcC-CCceEEEec
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVI---EGI-PNAEAVQLD 646 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~---~~~-~~~~~~~~d 646 (1053)
.+.++|+|.| +|++|+.+++.|++.| .+|.+++|+ ++.+++. ... .++..+.+|
T Consensus 13 l~~k~vlItGas~gIG~~ia~~l~~~G--------------------~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D 71 (258)
T PRK06935 13 LDGKVAIVTGGNTGLGQGYAVALAKAG--------------------ADIIITTHG-TNWDETRRLIEKEGRKVTFVQVD 71 (258)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC--------------------CEEEEEeCC-cHHHHHHHHHHhcCCceEEEEcC
Confidence 3468899999 6999999999999987 378888887 3333333 222 246788999
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++|.+++.++++ ..|++|++++.
T Consensus 72 ~~~~~~i~~~~~~~~~~~g~id~li~~ag~ 101 (258)
T PRK06935 72 LTKPESAEKVVKEALEEFGKIDILVNNAGT 101 (258)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 999888777665 46999999865
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.008 Score=65.55 Aligned_cols=76 Identities=21% Similarity=0.251 Sum_probs=58.6
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEE-EECCHHHHHHHHhcC----CCceEEEecC
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLV-ASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v-~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
.++++|.| +|++|+.+++.|+++| .+|.+ ..|+.++++++.+.+ .++..+.+|+
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~G--------------------~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~ 65 (254)
T PRK12746 6 GKVALVTGASRGIGRAIAMRLANDG--------------------ALVAIHYGRNKQAADETIREIESNGGKAFLIEADL 65 (254)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC--------------------CEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCc
Confidence 47899999 7999999999999987 25655 478877766555433 2466788999
Q ss_pred CCHHHHHHhhc-------------cccEEEecCCc
Q 001559 648 SDHKSLCKCIS-------------QVEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~-------------~~DvVI~~~p~ 669 (1053)
+|.+++.++++ ..|+||+++..
T Consensus 66 ~d~~~i~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 100 (254)
T PRK12746 66 NSIDGVKKLVEQLKNELQIRVGTSEIDILVNNAGI 100 (254)
T ss_pred CCHHHHHHHHHHHHHHhccccCCCCccEEEECCCC
Confidence 99988876655 47999999864
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.015 Score=65.14 Aligned_cols=94 Identities=11% Similarity=0.117 Sum_probs=64.4
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
++|.|||+|.+|.+++..|.+.+ + ...|.+++|+.++++.+.+ ..-+.. ..+ ..
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g-~-----------------~~~v~~~d~~~~~~~~~~~-~g~~~~----~~~---~~ 54 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKG-L-----------------ISKVYGYDHNELHLKKALE-LGLVDE----IVS---FE 54 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcC-C-----------------CCEEEEEcCCHHHHHHHHH-CCCCcc----cCC---HH
Confidence 47999999999999999999876 2 1378889999888776543 221110 112 23
Q ss_pred HhhccccEEEecCCccccHHHHHHH--HHhCCeEEEeeccChh
Q 001559 655 KCISQVEIVISLLPASCHVMVANAC--IEFKKHLVTASYIDDS 695 (1053)
Q Consensus 655 ~~i~~~DvVI~~~p~~~~~~v~~ac--i~~g~~~vD~sy~~~~ 695 (1053)
++. ++|+||-|+|......+.... +..++.++|++.....
T Consensus 55 ~~~-~aD~Vilavp~~~~~~~~~~l~~l~~~~iv~d~gs~k~~ 96 (275)
T PRK08507 55 ELK-KCDVIFLAIPVDAIIEILPKLLDIKENTTIIDLGSTKAK 96 (275)
T ss_pred HHh-cCCEEEEeCcHHHHHHHHHHHhccCCCCEEEECccchHH
Confidence 333 499999999987655544433 4567788998765433
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0052 Score=70.81 Aligned_cols=93 Identities=16% Similarity=0.093 Sum_probs=64.2
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
+++|+|+| +|++|+.+++.|.+++ + +..++..+.+..+..+.+. +.+.+....|..+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~-h----------------p~~~l~~l~s~~~~g~~l~--~~g~~i~v~d~~~--- 58 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERN-F----------------PVDKLRLLASARSAGKELS--FKGKELKVEDLTT--- 58 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCC-C----------------CcceEEEEEccccCCCeee--eCCceeEEeeCCH---
Confidence 46899999 7999999999999864 1 0135555555433333321 2223333344422
Q ss_pred HHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEee
Q 001559 653 LCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~s 690 (1053)
..++++|+||.|+|.+....++...+++|+.+||+|
T Consensus 59 --~~~~~vDvVf~A~g~g~s~~~~~~~~~~G~~VIDlS 94 (334)
T PRK14874 59 --FDFSGVDIALFSAGGSVSKKYAPKAAAAGAVVIDNS 94 (334)
T ss_pred --HHHcCCCEEEECCChHHHHHHHHHHHhCCCEEEECC
Confidence 123689999999999888888888889999999987
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.012 Score=72.37 Aligned_cols=127 Identities=17% Similarity=0.209 Sum_probs=85.8
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
+-+++|+|+|.+|+.+++.|.+++ .++.++|.|+++++++.+. +..++..|.+|++.|
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g--------------------~~vvvId~d~~~~~~~~~~--g~~~i~GD~~~~~~L 474 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAG--------------------IPLVVIETSRTRVDELRER--GIRAVLGNAANEEIM 474 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCC--------------------CCEEEEECCHHHHHHHHHC--CCeEEEcCCCCHHHH
Confidence 356999999999999999999887 3799999999999888753 578999999999988
Q ss_pred H-HhhccccEEEecCCccccH-HHHHHHHH--hCCeEEEeeccChhHHHHHHHHHHcCCeEEecCCCChhHHHHHHHHHH
Q 001559 654 C-KCISQVEIVISLLPASCHV-MVANACIE--FKKHLVTASYIDDSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMI 729 (1053)
Q Consensus 654 ~-~~i~~~DvVI~~~p~~~~~-~v~~aci~--~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~~mla~~~i 729 (1053)
+ .-++++|.|+-+++..... .+...+.+ ..++++--...+.+. +..++.|+..+. .| ....+.++.
T Consensus 475 ~~a~i~~a~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar~~~~~~~----~~l~~~Gad~vv----~p--~~~~a~~i~ 544 (558)
T PRK10669 475 QLAHLDCARWLLLTIPNGYEAGEIVASAREKRPDIEIIARAHYDDEV----AYITERGANQVV----MG--EREIARTML 544 (558)
T ss_pred HhcCccccCEEEEEcCChHHHHHHHHHHHHHCCCCeEEEEECCHHHH----HHHHHcCCCEEE----Ch--HHHHHHHHH
Confidence 8 4578999999888764432 23322222 223444333332222 233567876554 22 234555555
Q ss_pred HHh
Q 001559 730 NHA 732 (1053)
Q Consensus 730 ~~~ 732 (1053)
+.+
T Consensus 545 ~~l 547 (558)
T PRK10669 545 ELL 547 (558)
T ss_pred HHh
Confidence 544
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.008 Score=66.28 Aligned_cols=78 Identities=17% Similarity=0.188 Sum_probs=62.5
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEec
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLD 646 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d 646 (1053)
.+.++++|.| +|++|+.+++.|++.| .+|.+.+|+.++++++.+.+ .++..+.+|
T Consensus 8 ~~~k~~lItGa~~~iG~~ia~~l~~~G--------------------~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 67 (265)
T PRK07097 8 LKGKIALITGASYGIGFAIAKAYAKAG--------------------ATIVFNDINQELVDKGLAAYRELGIEAHGYVCD 67 (265)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC--------------------CeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcC
Confidence 3567899999 6999999999999987 37888899988777665443 246778999
Q ss_pred CCCHHHHHHhhcc-------ccEEEecCCc
Q 001559 647 VSDHKSLCKCISQ-------VEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~~-------~DvVI~~~p~ 669 (1053)
++|.+++.+++.+ .|+||++++.
T Consensus 68 l~~~~~~~~~~~~~~~~~~~id~li~~ag~ 97 (265)
T PRK07097 68 VTDEDGVQAMVSQIEKEVGVIDILVNNAGI 97 (265)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCEEEECCCC
Confidence 9999887766643 6999999875
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0082 Score=65.73 Aligned_cols=77 Identities=17% Similarity=0.260 Sum_probs=61.1
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----C--CceEEEe
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----P--NAEAVQL 645 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~--~~~~~~~ 645 (1053)
+.++++|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+.+ + ++..+.+
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G--------------------~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~ 67 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLG--------------------ADVLIVARDADALAQARDELAEEFPEREVHGLAA 67 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcC--------------------CEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEEC
Confidence 467899999 6999999999999987 37999999988887766542 2 3566788
Q ss_pred cCCCHHHHHHhhc-------cccEEEecCCc
Q 001559 646 DVSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 646 d~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
|++|.+++.+++. ..|+||++++.
T Consensus 68 Dl~~~~~~~~~~~~~~~~~g~id~li~~ag~ 98 (257)
T PRK09242 68 DVSDDEDRRAILDWVEDHWDGLHILVNNAGG 98 (257)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 9998877665554 46999999875
|
|
| >cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2 | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.013 Score=69.23 Aligned_cols=114 Identities=14% Similarity=0.162 Sum_probs=63.9
Q ss_pred eEEEEcCchhhHHHHHHHHhCCCCCccc-ccccccccc-cCCCccEEEEEEC----CHHHHH----HHHhcCCCceEEEe
Q 001559 576 SVLIIGAGRVCRPAAELLASFGSPSHQM-QKTCMETDF-EWQNDIRVLVASL----YLKDAE----EVIEGIPNAEAVQL 645 (1053)
Q Consensus 576 ~VlIiGaG~vg~~ia~~L~~~g~~~~~~-~~~~~~~~~-~~~~~~~v~v~~r----~~~~a~----~l~~~~~~~~~~~~ 645 (1053)
+|+|+|+|++|..+++.|+..| +..+. -...+.|++ .+.+|+.-...=| ...|++ .+.+..|.+.+...
T Consensus 1 kVlvVGaGGlGcE~lKnLal~G-v~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~ 79 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMG-VGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITAL 79 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEE
Confidence 5899999999999999999887 20000 001111111 2222221111000 012333 33344566554433
Q ss_pred cCC-CHHH---H-HHhhccccEEEecCCcc-ccHHHHHHHHHhCCeEEEee
Q 001559 646 DVS-DHKS---L-CKCISQVEIVISLLPAS-CHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 646 d~~-d~~~---l-~~~i~~~DvVI~~~p~~-~~~~v~~aci~~g~~~vD~s 690 (1053)
+.. +.+. + .+.+++.|+||+|+... ....+.+.|...++.+++..
T Consensus 80 ~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~g 130 (435)
T cd01490 80 QNRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLLESG 130 (435)
T ss_pred ecccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 321 2211 2 36678899999998543 34567889999999999975
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1. |
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.013 Score=65.70 Aligned_cols=74 Identities=20% Similarity=0.300 Sum_probs=55.5
Q ss_pred EEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----C--CceE----EEe
Q 001559 577 VLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----P--NAEA----VQL 645 (1053)
Q Consensus 577 VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~--~~~~----~~~ 645 (1053)
|||-| +|.+|+.++++|++.+. .++.+.|++..+.-++...+ + +++. +..
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p-------------------~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vig 61 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGP-------------------KKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIG 61 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB--------------------SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CT
T ss_pred CEEEccccHHHHHHHHHHHhcCC-------------------CeEEEeCCChhHHHHHHHHHhhcccccCcccccCceee
Confidence 68888 79999999999999863 38999999998887777666 3 3433 367
Q ss_pred cCCCHHHHHHhhc--cccEEEecCCc
Q 001559 646 DVSDHKSLCKCIS--QVEIVISLLPA 669 (1053)
Q Consensus 646 d~~d~~~l~~~i~--~~DvVI~~~p~ 669 (1053)
|++|.+.+.++++ +.|+|++++-.
T Consensus 62 Dvrd~~~l~~~~~~~~pdiVfHaAA~ 87 (293)
T PF02719_consen 62 DVRDKERLNRIFEEYKPDIVFHAAAL 87 (293)
T ss_dssp SCCHHHHHHHHTT--T-SEEEE----
T ss_pred cccCHHHHHHHHhhcCCCEEEEChhc
Confidence 9999999999999 89999999865
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0073 Score=65.10 Aligned_cols=77 Identities=19% Similarity=0.169 Sum_probs=60.8
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC---CCceEEEecCC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI---PNAEAVQLDVS 648 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~---~~~~~~~~d~~ 648 (1053)
+.++|+|.| +|++|..+++.|++.| ..|.+.+|+.++++++...+ .++..+.+|++
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~ 63 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEG--------------------AQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVS 63 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCC
Confidence 357899999 6999999999999887 37999999988887664432 34678889999
Q ss_pred CHHHHHHhhcc-------ccEEEecCCc
Q 001559 649 DHKSLCKCISQ-------VEIVISLLPA 669 (1053)
Q Consensus 649 d~~~l~~~i~~-------~DvVI~~~p~ 669 (1053)
|.+++.+++++ .|.+|++++.
T Consensus 64 ~~~~~~~~~~~~~~~~~~id~ii~~ag~ 91 (238)
T PRK05786 64 STESARNVIEKAAKVLNAIDGLVVTVGG 91 (238)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 98888766543 4888888764
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.006 Score=66.27 Aligned_cols=76 Identities=24% Similarity=0.283 Sum_probs=58.7
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEE-EECCHHHHHHHHhcC----CCceEEEecC
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLV-ASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v-~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
+++++|.| +|++|+.+++.|++.| .+|.+ ..|+.++.+++.+.+ .++..+.+|+
T Consensus 4 ~~~vlItGa~g~iG~~~a~~l~~~g--------------------~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~ 63 (250)
T PRK08063 4 GKVALVTGSSRGIGKAIALRLAEEG--------------------YDIAVNYARSRKAAEETAEEIEALGRKALAVKANV 63 (250)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC--------------------CEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCC
Confidence 46899999 7999999999999987 25544 578877776655432 2467788999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+|.+++.++++ ..|+||++++.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 92 (250)
T PRK08063 64 GDVEKIKEMFAQIDEEFGRLDVFVNNAAS 92 (250)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 99988877666 36999999864
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.014 Score=66.34 Aligned_cols=120 Identities=22% Similarity=0.194 Sum_probs=70.8
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhc----------CCCce---
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEG----------IPNAE--- 641 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~----------~~~~~--- 641 (1053)
++|.|||+|.+|.+++..|++.| .+|+++||+.+.+++..+. .....
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G--------------------~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~ 62 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAG--------------------HEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEA 62 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCC--------------------CeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhh
Confidence 57999999999999999999987 3899999998766653211 00000
Q ss_pred --E--EEecCCCHHHHHHhhccccEEEecCCcccc--HHHHH---HHHHhCCeEEEeeccChhHHHHHHHHHHcCCeEEe
Q 001559 642 --A--VQLDVSDHKSLCKCISQVEIVISLLPASCH--VMVAN---ACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILG 712 (1053)
Q Consensus 642 --~--~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~--~~v~~---aci~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~l~ 712 (1053)
. -.+.. ..++.+.++++|+||.++|-... ..+.. .+.. +..+++.+-.......+.+.++..+ .++.
T Consensus 63 ~~~~~~~i~~--~~~~~~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~-~~~ii~ssts~~~~~~la~~~~~~~-~~~~ 138 (308)
T PRK06129 63 PDAVLARIRV--TDSLADAVADADYVQESAPENLELKRALFAELDALAP-PHAILASSTSALLASAFTEHLAGRE-RCLV 138 (308)
T ss_pred HHHHhcCeEE--ECcHHHhhCCCCEEEECCcCCHHHHHHHHHHHHHhCC-CcceEEEeCCCCCHHHHHHhcCCcc-cEEE
Confidence 0 00011 13466778899999999997642 22222 2222 2334444433334445654444444 3444
Q ss_pred cCCCCh
Q 001559 713 EMGLDP 718 (1053)
Q Consensus 713 g~G~dP 718 (1053)
..-+.|
T Consensus 139 ~hp~~p 144 (308)
T PRK06129 139 AHPINP 144 (308)
T ss_pred EecCCC
Confidence 444544
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0096 Score=65.47 Aligned_cols=76 Identities=16% Similarity=0.227 Sum_probs=58.7
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH-HHHHHHHhcCCCceEEEecCCC
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL-KDAEEVIEGIPNAEAVQLDVSD 649 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~-~~a~~l~~~~~~~~~~~~d~~d 649 (1053)
.++++++|.| +|++|+.+++.|++.| .+|.+++|+. +..+.. ...+ ...+.+|++|
T Consensus 12 l~~k~~lITGas~gIG~ala~~l~~~G--------------------~~Vi~~~r~~~~~~~~~-~~~~-~~~~~~D~~~ 69 (245)
T PRK12367 12 WQGKRIGITGASGALGKALTKAFRAKG--------------------AKVIGLTHSKINNSESN-DESP-NEWIKWECGK 69 (245)
T ss_pred hCCCEEEEEcCCcHHHHHHHHHHHHCC--------------------CEEEEEECCchhhhhhh-ccCC-CeEEEeeCCC
Confidence 3467899999 6999999999999987 3788888876 332221 1112 3567899999
Q ss_pred HHHHHHhhccccEEEecCCc
Q 001559 650 HKSLCKCISQVEIVISLLPA 669 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~ 669 (1053)
.+++.+.+.+.|++||+++.
T Consensus 70 ~~~~~~~~~~iDilVnnAG~ 89 (245)
T PRK12367 70 EESLDKQLASLDVLILNHGI 89 (245)
T ss_pred HHHHHHhcCCCCEEEECCcc
Confidence 99998888899999999875
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0075 Score=66.91 Aligned_cols=75 Identities=17% Similarity=0.245 Sum_probs=58.6
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC------CCceEEEec
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI------PNAEAVQLD 646 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~------~~~~~~~~d 646 (1053)
++.++|.| +|++|+.+++.|++.| ..|.+++|+.++++++.+.. .++.++.+|
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D 62 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKG--------------------YLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLD 62 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecC
Confidence 35689999 6999999999999987 37888999988776665431 246788899
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++|.+++.+ +. ..|+||++++.
T Consensus 63 ~~d~~~~~~-~~~~~~~~~~id~vv~~ag~ 91 (280)
T PRK06914 63 VTDQNSIHN-FQLVLKEIGRIDLLVNNAGY 91 (280)
T ss_pred CCCHHHHHH-HHHHHHhcCCeeEEEECCcc
Confidence 999887765 33 46999999864
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.01 Score=64.45 Aligned_cols=78 Identities=15% Similarity=0.192 Sum_probs=57.9
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH-HHHHHHhcC-CCceEEEecCCC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK-DAEEVIEGI-PNAEAVQLDVSD 649 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~-~a~~l~~~~-~~~~~~~~d~~d 649 (1053)
+.++|+|.| +|++|+++++.|++.| .+|.+.+|+.. ++.+..... .++..+.+|+++
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G--------------------~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~ 63 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEAG--------------------ADIVGAGRSEPSETQQQVEALGRRFLSLTADLSD 63 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--------------------CEEEEEcCchHHHHHHHHHhcCCceEEEECCCCC
Confidence 468899999 6999999999999987 37888888752 222222333 246788999999
Q ss_pred HHHHHHhhc-------cccEEEecCCcc
Q 001559 650 HKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 650 ~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
.+++.++++ ..|++|++++..
T Consensus 64 ~~~~~~~~~~~~~~~~~~d~li~~ag~~ 91 (248)
T TIGR01832 64 IEAIKALVDSAVEEFGHIDILVNNAGII 91 (248)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 888775543 479999998653
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.019 Score=57.30 Aligned_cols=90 Identities=16% Similarity=0.221 Sum_probs=69.3
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
+.++|++||+| .|..+|..|++.| .+|+.+|.+++..+...+. .+.++..|+.+++
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G--------------------~~ViaIDi~~~aV~~a~~~--~~~~v~dDlf~p~- 71 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESG--------------------FDVIVIDINEKAVEKAKKL--GLNAFVDDLFNPN- 71 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHh--CCeEEECcCCCCC-
Confidence 45789999999 8999999999887 3899999999877766554 3678888887653
Q ss_pred HHHhhccccEEEecCCc-cccHHHHHHHHHhCCeEE
Q 001559 653 LCKCISQVEIVISLLPA-SCHVMVANACIEFKKHLV 687 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~-~~~~~v~~aci~~g~~~v 687 (1053)
-++-+++|+|.++=|+ .+++++.+-+-+-|+.++
T Consensus 72 -~~~y~~a~liysirpp~el~~~~~~la~~~~~~~~ 106 (134)
T PRK04148 72 -LEIYKNAKLIYSIRPPRDLQPFILELAKKINVPLI 106 (134)
T ss_pred -HHHHhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEE
Confidence 2556789999999865 467777777766666543
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0085 Score=71.63 Aligned_cols=91 Identities=16% Similarity=0.208 Sum_probs=65.0
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH-HHHHHHHhcCC--CceEEEecCCC
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL-KDAEEVIEGIP--NAEAVQLDVSD 649 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~-~~a~~l~~~~~--~~~~~~~d~~d 649 (1053)
+.++|+|+|+|.+|.++|+.|++.| ..|++++++. +.+++..+.+. +++++..|..+
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G--------------------~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 63 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLG--------------------AKVILTDEKEEDQLKEALEELGELGIELVLGEYPE 63 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--------------------CEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcch
Confidence 4688999999999999999999998 3899999974 33333333222 35666666543
Q ss_pred HHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEE
Q 001559 650 HKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVT 688 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD 688 (1053)
+...++|+||.++......+...+|.+.|..++.
T Consensus 64 -----~~~~~~d~vv~~~g~~~~~~~~~~a~~~~i~~~~ 97 (450)
T PRK14106 64 -----EFLEGVDLVVVSPGVPLDSPPVVQAHKKGIEVIG 97 (450)
T ss_pred -----hHhhcCCEEEECCCCCCCCHHHHHHHHCCCcEEe
Confidence 3456799999998776655666677777766543
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0053 Score=71.04 Aligned_cols=100 Identities=19% Similarity=0.196 Sum_probs=63.4
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCC--ceEEEecCC
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPN--AEAVQLDVS 648 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~--~~~~~~d~~ 648 (1053)
....++|+|||+|.+|+.+|+.|...| .+|.+++|+..+.......++. +........
T Consensus 156 ~l~gktvGIiG~G~IG~~vA~~l~afG--------------------~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (347)
T PLN02928 156 TLFGKTVFILGYGAIGIELAKRLRPFG--------------------VKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG 215 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHhhCC--------------------CEEEEECCCCChhhhhhhccccccccccccccC
Confidence 355789999999999999999998876 4899999874332211100110 000000011
Q ss_pred CHHHHHHhhccccEEEecCCcccc-----HHHHHHHHHhCCeEEEee
Q 001559 649 DHKSLCKCISQVEIVISLLPASCH-----VMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 649 d~~~l~~~i~~~DvVI~~~p~~~~-----~~v~~aci~~g~~~vD~s 690 (1053)
...+|.++++++|+|+.++|..-. ..-..++++.|..+|+++
T Consensus 216 ~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINva 262 (347)
T PLN02928 216 GHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIA 262 (347)
T ss_pred cccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECC
Confidence 345789999999999999996532 112234456666677665
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0068 Score=66.35 Aligned_cols=78 Identities=21% Similarity=0.312 Sum_probs=61.3
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEec
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLD 646 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d 646 (1053)
..+++|+|.| +|++|+.+++.|++.| .+|.+++|+.++.+++...+ .++..+.+|
T Consensus 9 l~~k~vlVtG~s~gIG~~la~~l~~~G--------------------~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D 68 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATAG--------------------ASVVVSDINADAANHVVDEIQQLGGQAFACRCD 68 (255)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC--------------------CeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 3468899999 7999999999999987 37888999888776665432 245678899
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++|.+++.++++ ..|+||++++.
T Consensus 69 ~~~~~~i~~~~~~~~~~~~~~d~li~~ag~ 98 (255)
T PRK06113 69 ITSEQELSALADFALSKLGKVDILVNNAGG 98 (255)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 999988776654 36999999864
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0095 Score=66.38 Aligned_cols=78 Identities=18% Similarity=0.168 Sum_probs=59.8
Q ss_pred CCCeEEEEcC---chhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH---HHHHHHHhcCCCceEEEec
Q 001559 573 GTSSVLIIGA---GRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL---KDAEEVIEGIPNAEAVQLD 646 (1053)
Q Consensus 573 ~~~~VlIiGa---G~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~---~~a~~l~~~~~~~~~~~~d 646 (1053)
+.+.++|.|+ +++|+++|+.|++.| .+|.+..|+. ++++++.+.+.....+++|
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~G--------------------~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~D 68 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAAG--------------------AELAFTYQGDALKKRVEPLAAELGAFVAGHCD 68 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHCC--------------------CEEEEEcCchHHHHHHHHHHHhcCCceEEecC
Confidence 4578999996 699999999999988 3787877763 4556666665555678899
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCcc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
++|.+++.++++ ..|++||+++..
T Consensus 69 l~~~~~v~~~~~~~~~~~g~iD~lv~nAG~~ 99 (272)
T PRK08159 69 VTDEASIDAVFETLEKKWGKLDFVVHAIGFS 99 (272)
T ss_pred CCCHHHHHHHHHHHHHhcCCCcEEEECCccc
Confidence 999888776654 369999998753
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0095 Score=66.19 Aligned_cols=77 Identities=25% Similarity=0.359 Sum_probs=60.6
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
.++.++|.| +|++|+.+++.|++.| .+|.+++|+.++++++...+ .++..+.+|+
T Consensus 9 ~~~~vlVtGa~g~iG~~la~~L~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl 68 (274)
T PRK07775 9 DRRPALVAGASSGIGAATAIELAAAG--------------------FPVALGARRVEKCEELVDKIRADGGEAVAFPLDV 68 (274)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 456899999 6999999999999987 37888899887776654432 2466778999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+|.+++.++++ ..|+||++++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~id~vi~~Ag~ 97 (274)
T PRK07775 69 TDPDSVKSFVAQAEEALGEIEVLVSGAGD 97 (274)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 99988877665 46999999864
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.01 Score=64.88 Aligned_cols=77 Identities=21% Similarity=0.238 Sum_probs=59.9
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhc----CCCceEEEec
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEG----IPNAEAVQLD 646 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~----~~~~~~~~~d 646 (1053)
.+.+.++|.| +|++|+.+++.|++.| .+|.+.+|+.++. ++.+. ..++.++.+|
T Consensus 5 l~~~~ilItGasggiG~~la~~l~~~G--------------------~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~D 63 (258)
T PRK08628 5 LKDKVVIVTGGASGIGAAISLRLAEEG--------------------AIPVIFGRSAPDD-EFAEELRALQPRAEFVQVD 63 (258)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHcC--------------------CcEEEEcCChhhH-HHHHHHHhcCCceEEEEcc
Confidence 4467899999 6999999999999987 3688888887655 33322 2357789999
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+++.+++.++++ ..|+||++++.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 93 (258)
T PRK08628 64 LTDDAQCRDAVEQTVAKFGRIDGLVNNAGV 93 (258)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEECCcc
Confidence 999988877665 46999999874
|
|
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.011 Score=66.63 Aligned_cols=76 Identities=20% Similarity=0.184 Sum_probs=58.4
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH--HHHHHHhcC----CCceEEEe
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK--DAEEVIEGI----PNAEAVQL 645 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~--~a~~l~~~~----~~~~~~~~ 645 (1053)
++++|+|.| +|++|+.+++.|++.| .+|.++.|+.+ +..+....+ .+++.+.+
T Consensus 5 ~~k~vlVTGatG~IG~~lv~~Ll~~G--------------------~~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~ 64 (297)
T PLN02583 5 SSKSVCVMDASGYVGFWLVKRLLSRG--------------------YTVHAAVQKNGETEIEKEIRGLSCEEERLKVFDV 64 (297)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCC--------------------CEEEEEEcCchhhhHHHHHHhcccCCCceEEEEe
Confidence 457899999 6999999999999987 37888888532 332232322 24778889
Q ss_pred cCCCHHHHHHhhccccEEEecCC
Q 001559 646 DVSDHKSLCKCISQVEIVISLLP 668 (1053)
Q Consensus 646 d~~d~~~l~~~i~~~DvVI~~~p 668 (1053)
|++|.+.+.+.+.++|.|+++.+
T Consensus 65 Dl~d~~~~~~~l~~~d~v~~~~~ 87 (297)
T PLN02583 65 DPLDYHSILDALKGCSGLFCCFD 87 (297)
T ss_pred cCCCHHHHHHHHcCCCEEEEeCc
Confidence 99999999999999999998653
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.011 Score=63.64 Aligned_cols=76 Identities=18% Similarity=0.248 Sum_probs=58.9
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEEC-CHHHHHHHHhcCCCceEEEecCCCH
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASL-YLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r-~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
+.++|+|.| +|++|+.+++.|++.| .+|.+..+ +.++++++.... ++..+.+|++|.
T Consensus 5 ~~k~vlItGasggIG~~~a~~l~~~G--------------------~~v~~~~~~~~~~~~~l~~~~-~~~~~~~D~~~~ 63 (237)
T PRK12742 5 TGKKVLVLGGSRGIGAAIVRRFVTDG--------------------ANVRFTYAGSKDAAERLAQET-GATAVQTDSADR 63 (237)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC--------------------CEEEEecCCCHHHHHHHHHHh-CCeEEecCCCCH
Confidence 357899999 6999999999999887 26666544 667777776654 356778999998
Q ss_pred HHHHHhhcc---ccEEEecCCc
Q 001559 651 KSLCKCISQ---VEIVISLLPA 669 (1053)
Q Consensus 651 ~~l~~~i~~---~DvVI~~~p~ 669 (1053)
+++.+.+.. .|++|++++.
T Consensus 64 ~~~~~~~~~~~~id~li~~ag~ 85 (237)
T PRK12742 64 DAVIDVVRKSGALDILVVNAGI 85 (237)
T ss_pred HHHHHHHHHhCCCcEEEECCCC
Confidence 888776654 7999999865
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.011 Score=63.48 Aligned_cols=74 Identities=22% Similarity=0.255 Sum_probs=59.6
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
+++++|.| +|++|+.+++.|++.| .+|.+++|+.+.++++... +++.+.+|++|.+.
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~G--------------------~~v~~~~r~~~~~~~~~~~--~~~~~~~D~~~~~~ 58 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRADG--------------------WRVIATARDAAALAALQAL--GAEALALDVADPAS 58 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhCC--------------------CEEEEEECCHHHHHHHHhc--cceEEEecCCCHHH
Confidence 46789998 7999999999999877 3789999998888776543 46788999999888
Q ss_pred HHHhh---c--cccEEEecCCc
Q 001559 653 LCKCI---S--QVEIVISLLPA 669 (1053)
Q Consensus 653 l~~~i---~--~~DvVI~~~p~ 669 (1053)
+.+++ . ..|+||++++.
T Consensus 59 v~~~~~~~~~~~~d~vi~~ag~ 80 (222)
T PRK06953 59 VAGLAWKLDGEALDAAVYVAGV 80 (222)
T ss_pred HHHHHHHhcCCCCCEEEECCCc
Confidence 77653 2 37999998865
|
|
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.017 Score=62.47 Aligned_cols=99 Identities=20% Similarity=0.231 Sum_probs=58.3
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC-------------------HHHHHH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY-------------------LKDAEE 632 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~-------------------~~~a~~ 632 (1053)
.+..+|+|+|.|++|+.+++.|++.| + -+++++|-+ ..+.+-
T Consensus 28 l~~~~V~VvGiGGVGSw~veALaRsG-i------------------g~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~v 88 (263)
T COG1179 28 LKQAHVCVVGIGGVGSWAVEALARSG-I------------------GRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEV 88 (263)
T ss_pred HhhCcEEEEecCchhHHHHHHHHHcC-C------------------CeEEEEecccccccccchhhHhhhhhcccHHHHH
Confidence 56788999999999999999999998 3 144444432 112222
Q ss_pred HH----hcCCCceEEEecCC-CHHHHHHhhcc-ccEEEecCCccc-cHHHHHHHHHhCCeEEEe
Q 001559 633 VI----EGIPNAEAVQLDVS-DHKSLCKCISQ-VEIVISLLPASC-HVMVANACIEFKKHLVTA 689 (1053)
Q Consensus 633 l~----~~~~~~~~~~~d~~-d~~~l~~~i~~-~DvVI~~~p~~~-~~~v~~aci~~g~~~vD~ 689 (1053)
+. +-.|++++...+.. +.+.+.+++.. .|.||+|...-. -..++.-|.+++..++..
T Consensus 89 m~eri~~InP~c~V~~~~~f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss 152 (263)
T COG1179 89 MKERIKQINPECEVTAINDFITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISS 152 (263)
T ss_pred HHHHHHhhCCCceEeehHhhhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEee
Confidence 22 22455555544422 56667766654 777777764321 133344455555544444
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.014 Score=62.45 Aligned_cols=73 Identities=27% Similarity=0.298 Sum_probs=56.9
Q ss_pred EEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHHH
Q 001559 577 VLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLCK 655 (1053)
Q Consensus 577 VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~~ 655 (1053)
|+|+| +|++|+++++.|.+.+ ..|....|+........... +++.+.+|+.|.+.+.+
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g--------------------~~v~~~~~~~~~~~~~~~~~-~~~~~~~dl~~~~~~~~ 59 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKG--------------------HEVIVLSRSSNSESFEEKKL-NVEFVIGDLTDKEQLEK 59 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT--------------------TEEEEEESCSTGGHHHHHHT-TEEEEESETTSHHHHHH
T ss_pred EEEEccCCHHHHHHHHHHHHcC--------------------Cccccccccccccccccccc-eEEEEEeeccccccccc
Confidence 78999 7999999999999987 25666666644433222222 57889999999999999
Q ss_pred hhccc--cEEEecCCcc
Q 001559 656 CISQV--EIVISLLPAS 670 (1053)
Q Consensus 656 ~i~~~--DvVI~~~p~~ 670 (1053)
+++.. |+||+++...
T Consensus 60 ~~~~~~~d~vi~~a~~~ 76 (236)
T PF01370_consen 60 LLEKANIDVVIHLAAFS 76 (236)
T ss_dssp HHHHHTESEEEEEBSSS
T ss_pred cccccCceEEEEeeccc
Confidence 99987 9999998653
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.016 Score=65.05 Aligned_cols=93 Identities=18% Similarity=0.175 Sum_probs=65.8
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH---
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH--- 650 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~--- 650 (1053)
.++|+|+|+|.+|+.+++.|.+.| ..+.|++++...+....... +++.|.
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g--------------------~~v~i~g~d~~~~~~~~a~~-------lgv~d~~~~ 55 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAG--------------------LVVRIIGRDRSAATLKAALE-------LGVIDELTV 55 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcC--------------------CeEEEEeecCcHHHHHHHhh-------cCccccccc
Confidence 578999999999999999999988 26777777765544332221 122221
Q ss_pred HHHHHhhccccEEEecCCccccHHHHHHH---HHhCCeEEEeeccC
Q 001559 651 KSLCKCISQVEIVISLLPASCHVMVANAC---IEFKKHLVTASYID 693 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~~~v~~ac---i~~g~~~vD~sy~~ 693 (1053)
+...+.+.++|+||-++|......+++.. ++.|+.+.|+....
T Consensus 56 ~~~~~~~~~aD~VivavPi~~~~~~l~~l~~~l~~g~iv~Dv~S~K 101 (279)
T COG0287 56 AGLAEAAAEADLVIVAVPIEATEEVLKELAPHLKKGAIVTDVGSVK 101 (279)
T ss_pred chhhhhcccCCEEEEeccHHHHHHHHHHhcccCCCCCEEEeccccc
Confidence 22356777899999999988766665543 46788999997653
|
|
| >KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.007 Score=65.74 Aligned_cols=120 Identities=12% Similarity=0.134 Sum_probs=89.1
Q ss_pred CCeEEEEcCchhhHHHHHHHHhC-CCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCC-ceEEEecCCCHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASF-GSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPN-AEAVQLDVSDHK 651 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~-~~~~~~d~~d~~ 651 (1053)
....+++|+|..+....+.-.+. +.. .+|.|++|+.++|+++++.+.+ ..-+++++...+
T Consensus 138 S~vL~i~GsG~qA~~hi~ih~~~~psl------------------reVrIwnht~e~A~~la~~lsk~~~~iqie~~~~q 199 (333)
T KOG3007|consen 138 SCVLTIFGSGLQAFWHIYIHIKLIPSL------------------REVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQ 199 (333)
T ss_pred ceEEEEEcccchhHHHHHHHHHhcccc------------------eEEEeecCChHHHHHHHHHhhhcccceEEEEEehh
Confidence 34567779999998887765443 322 4899999999999998875542 334566666667
Q ss_pred HHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEee-ccChhHHHHHHHHHHcCCeEEec
Q 001559 652 SLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTAS-YIDDSMSKLDEKAKGAGITILGE 713 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~s-y~~~~~~~L~~~Ak~~Gv~~l~g 713 (1053)
.+.++++..||++.||+.. .+-+.-..+++|+| +|+. ...|+|.+.++++-+.++.++..
T Consensus 200 sl~~aV~~sDIIs~atlst-ePilfgewlkpgth-IdlVGsf~p~mhEcDdelIq~a~vfVDs 260 (333)
T KOG3007|consen 200 SLNGAVSNSDIISGATLST-EPILFGEWLKPGTH-IDLVGSFKPVMHECDDELIQSACVFVDS 260 (333)
T ss_pred hhhcccccCceEEeccccC-CceeeeeeecCCce-EeeeccCCchHHHHhHHHhhhheEEEec
Confidence 8999999999999999753 33444566889987 4554 46789999999999988887764
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.01 Score=66.00 Aligned_cols=77 Identities=17% Similarity=0.167 Sum_probs=57.0
Q ss_pred CCCeEEEEcCc---hhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHH---HHHHHhcCCCceEEEec
Q 001559 573 GTSSVLIIGAG---RVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKD---AEEVIEGIPNAEAVQLD 646 (1053)
Q Consensus 573 ~~~~VlIiGaG---~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~---a~~l~~~~~~~~~~~~d 646 (1053)
+.+.++|.|++ ++|+++|+.|++.| .+|.+++|+.+. .+++.+..+....+++|
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~G--------------------a~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~D 65 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQG--------------------AELAFTYQGEALGKRVKPLAESLGSDFVLPCD 65 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCC--------------------CEEEEecCchHHHHHHHHHHHhcCCceEEeCC
Confidence 45789999975 89999999999988 378888887533 33443433333467899
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++|.+++.++++ ..|++||+++.
T Consensus 66 v~d~~~v~~~~~~~~~~~g~iD~lVnnAG~ 95 (271)
T PRK06505 66 VEDIASVDAVFEALEKKWGKLDFVVHAIGF 95 (271)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence 999888766654 46999999875
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.012 Score=64.11 Aligned_cols=78 Identities=23% Similarity=0.339 Sum_probs=61.5
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEec
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLD 646 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d 646 (1053)
.+.+.|+|.| +|++|+++++.|++.| .+|.+++|+.++++++.+.+ .++..+.+|
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G--------------------~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 65 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQG--------------------AHVIVSSRKLDGCQAVADAIVAAGGKAEALACH 65 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcC
Confidence 3457899999 7999999999999987 37899999988877666543 235678899
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++|.+++.++++ ..|+||++++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~id~li~~ag~ 95 (252)
T PRK07035 66 IGEMEQIDALFAHIRERHGRLDILVNNAAA 95 (252)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 998887766554 47999999864
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0095 Score=65.41 Aligned_cols=77 Identities=10% Similarity=0.233 Sum_probs=57.2
Q ss_pred CCCCeEEEEcC---chhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC--CCceEEEec
Q 001559 572 KGTSSVLIIGA---GRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI--PNAEAVQLD 646 (1053)
Q Consensus 572 ~~~~~VlIiGa---G~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~--~~~~~~~~d 646 (1053)
.+.+.++|.|+ +++|+++++.|++.| .+|.+.+|+. +.++..+.+ .++..+++|
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G--------------------~~Vi~~~r~~-~~~~~~~~~~~~~~~~~~~D 63 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQG--------------------ATVIYTYQND-RMKKSLQKLVDEEDLLVECD 63 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCC--------------------CEEEEecCch-HHHHHHHhhccCceeEEeCC
Confidence 34678999996 499999999999987 3788888884 444333332 236678999
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++|.+++.++++ ..|++||+++.
T Consensus 64 l~~~~~v~~~~~~~~~~~g~iD~lv~nAg~ 93 (252)
T PRK06079 64 VASDESIERAFATIKERVGKIDGIVHAIAY 93 (252)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEEcccc
Confidence 999887765543 36999999865
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0055 Score=62.89 Aligned_cols=88 Identities=11% Similarity=0.204 Sum_probs=54.0
Q ss_pred eEEEEEccchhHHHHHHHHhhCCCceecCCCchhhhhcccccCCCCcccceEEEeeeecccccccccCCCCCcccccccc
Q 001559 206 LVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFGKAKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYA 285 (1053)
Q Consensus 206 ~~v~i~G~G~vg~gA~~~~~~LGa~~V~~~dl~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (1053)
.+++|+|-|.||+|.++.++.+|++ |++.|..... .++.. ..+|.-
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~-V~V~e~DPi~--------------------------alqA~--~dGf~v----- 69 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGAR-VTVTEIDPIR--------------------------ALQAA--MDGFEV----- 69 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-E-EEEE-SSHHH--------------------------HHHHH--HTT-EE-----
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCE-EEEEECChHH--------------------------HHHhh--hcCcEe-----
Confidence 6789999999999999999999998 6665543211 01110 024421
Q ss_pred CccCcCcchhhhccCCCcEEEEcccccCCCCcccCHHHHHHhhcCCCCceEEEEEee
Q 001559 286 HPEHYNPVFHKKIAPYASVIVNCMYWEQRFPRLLSTQQLQDLVRKGCPLVGISDITC 342 (1053)
Q Consensus 286 ~p~~~~~~f~~~~~~~~DilIn~a~~g~~~P~Lit~~~v~~m~k~~~~gsvIvDis~ 342 (1053)
..+ ++.++.+||+|++. ....+|+.+++++| | .+.+++++..
T Consensus 70 ------~~~-~~a~~~adi~vtaT----G~~~vi~~e~~~~m-k---dgail~n~Gh 111 (162)
T PF00670_consen 70 ------MTL-EEALRDADIFVTAT----GNKDVITGEHFRQM-K---DGAILANAGH 111 (162)
T ss_dssp ------E-H-HHHTTT-SEEEE-S----SSSSSB-HHHHHHS-----TTEEEEESSS
T ss_pred ------cCH-HHHHhhCCEEEECC----CCccccCHHHHHHh-c---CCeEEeccCc
Confidence 112 56788999999983 34568999999997 5 6788887653
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0083 Score=69.10 Aligned_cols=90 Identities=21% Similarity=0.204 Sum_probs=62.6
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
....++|+|||.|.+|+.+|+.|...| .+|.+++|+..... ..... +. .
T Consensus 147 ~L~gktvgIiG~G~IG~~vA~~l~~~G--------------------~~V~~~d~~~~~~~--~~~~~-~~--------~ 195 (333)
T PRK13243 147 DVYGKTIGIIGFGRIGQAVARRAKGFG--------------------MRILYYSRTRKPEA--EKELG-AE--------Y 195 (333)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCC--------------------CEEEEECCCCChhh--HHHcC-CE--------e
Confidence 456789999999999999999998876 48899999754322 11111 11 1
Q ss_pred HHHHHhhccccEEEecCCcccc--H---HHHHHHHHhCCeEEEeec
Q 001559 651 KSLCKCISQVEIVISLLPASCH--V---MVANACIEFKKHLVTASY 691 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~--~---~v~~aci~~g~~~vD~sy 691 (1053)
.++.++++++|+|+.++|..-. . .-..+.++.|..+++++-
T Consensus 196 ~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aR 241 (333)
T PRK13243 196 RPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTAR 241 (333)
T ss_pred cCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcC
Confidence 3577889999999999996532 1 112334567777777763
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.012 Score=63.83 Aligned_cols=77 Identities=21% Similarity=0.269 Sum_probs=59.9
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
+.++++|+| +|++|+.+++.|++.| .+|.+++|+.++.++..+.+ .++..+++|+
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G--------------------~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~ 63 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKG--------------------AKLALIDLNQEKLEEAVAECGALGTEVRGYAANV 63 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCC
Confidence 357899999 5999999999999887 37899999987766654432 2466788999
Q ss_pred CCHHHHHHhhcc-------ccEEEecCCc
Q 001559 648 SDHKSLCKCISQ-------VEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~~-------~DvVI~~~p~ 669 (1053)
+|.+++.++++. .|+||++++.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 92 (253)
T PRK08217 64 TDEEDVEATFAQIAEDFGQLNGLINNAGI 92 (253)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 988777655543 6999999874
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.011 Score=64.48 Aligned_cols=75 Identities=31% Similarity=0.361 Sum_probs=59.3
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecCCC
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDVSD 649 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~~d 649 (1053)
++++|.| +|++|+.+++.|++.| .+|.+.+|+.++++++...+ .++..+.+|++|
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G--------------------~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~ 60 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDG--------------------FAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSD 60 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC
Confidence 4689999 7999999999999887 37888999987776655432 246778899999
Q ss_pred HHHHHHhhc-------cccEEEecCCc
Q 001559 650 HKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 650 ~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
.+++.++++ ..|+||++++.
T Consensus 61 ~~~i~~~~~~~~~~~~~id~vi~~ag~ 87 (254)
T TIGR02415 61 KDQVFSAIDQAAEKFGGFDVMVNNAGV 87 (254)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 988877654 36999999875
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0087 Score=67.61 Aligned_cols=98 Identities=12% Similarity=0.192 Sum_probs=62.6
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
|+|+|.| +|++|+.+++.|.+.| +|.+.+|... .+..|++|.+.+
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g---------------------~V~~~~~~~~-------------~~~~Dl~d~~~~ 46 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG---------------------NLIALDVHST-------------DYCGDFSNPEGV 46 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC---------------------CEEEeccccc-------------cccCCCCCHHHH
Confidence 5799999 6999999999998876 4666776421 234699999999
Q ss_pred HHhhc--cccEEEecCCccccHHHHHHHHHhCCeEEEeeccChhHHHHHHHHHHcCCeEEe
Q 001559 654 CKCIS--QVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILG 712 (1053)
Q Consensus 654 ~~~i~--~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~l~ 712 (1053)
.++++ ++|+||+|+...... .|...-.... ..+..-+..|.+.|++.|+.++.
T Consensus 47 ~~~~~~~~~D~Vih~Aa~~~~~----~~~~~~~~~~--~~N~~~~~~l~~aa~~~g~~~v~ 101 (299)
T PRK09987 47 AETVRKIRPDVIVNAAAHTAVD----KAESEPEFAQ--LLNATSVEAIAKAANEVGAWVVH 101 (299)
T ss_pred HHHHHhcCCCEEEECCccCCcc----hhhcCHHHHH--HHHHHHHHHHHHHHHHcCCeEEE
Confidence 98888 489999998543110 0100000000 00112345666778888876654
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.017 Score=72.38 Aligned_cols=114 Identities=13% Similarity=0.064 Sum_probs=73.3
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
..++++|.|||+|.+|..++..|.+.| .+|.+++|+... ++ +..+. +.. .
T Consensus 366 ~~~~~kIgIIGlG~mG~slA~~L~~~G--------------------~~V~~~dr~~~~-~~-a~~~G-v~~----~--- 415 (667)
T PLN02712 366 DGSKLKIAIVGFGNFGQFLAKTMVKQG--------------------HTVLAYSRSDYS-DE-AQKLG-VSY----F--- 415 (667)
T ss_pred CCCCCEEEEEecCHHHHHHHHHHHHCc--------------------CEEEEEECChHH-HH-HHHcC-CeE----e---
Confidence 346789999999999999999998876 378899998543 22 22332 221 1
Q ss_pred HHHHHhhc-cccEEEecCCccccHHHHHH----HHHhCCeEEEeeccChhHHHHHHHHHHcCCeEEecC
Q 001559 651 KSLCKCIS-QVEIVISLLPASCHVMVANA----CIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGEM 714 (1053)
Q Consensus 651 ~~l~~~i~-~~DvVI~~~p~~~~~~v~~a----ci~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~l~g~ 714 (1053)
.++.++++ ++|+||-|+|......++.. .++.|+.++|++-......+..+.....|+.++.++
T Consensus 416 ~~~~el~~~~aDvVILavP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~H 484 (667)
T PLN02712 416 SDADDLCEEHPEVILLCTSILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTH 484 (667)
T ss_pred CCHHHHHhcCCCEEEECCChHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeC
Confidence 22344444 58999999997655444433 245678899997654333333334444566666443
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.012 Score=63.71 Aligned_cols=76 Identities=14% Similarity=0.189 Sum_probs=60.1
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
+.+.++|.| ++++|+++++.|++.| .+|.+++|+.++++++.+.+ .++..+.+|+
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G--------------------~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~ 63 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLG--------------------ATLILCDQDQSALKDTYEQCSALTDNVYSFQLKD 63 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCC--------------------CEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccC
Confidence 457899999 6889999999999987 37899999998887765432 2355677899
Q ss_pred CCHHHHHHhhc--------cccEEEecCC
Q 001559 648 SDHKSLCKCIS--------QVEIVISLLP 668 (1053)
Q Consensus 648 ~d~~~l~~~i~--------~~DvVI~~~p 668 (1053)
+|.+++.++++ ..|++|++++
T Consensus 64 ~~~~~~~~~~~~~~~~~g~~iD~li~nag 92 (227)
T PRK08862 64 FSQESIRHLFDAIEQQFNRAPDVLVNNWT 92 (227)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCEEEECCc
Confidence 99888765542 5799999985
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.014 Score=63.36 Aligned_cols=77 Identities=22% Similarity=0.304 Sum_probs=57.3
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH-HHHHHHhcC----CCceEEEec
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK-DAEEVIEGI----PNAEAVQLD 646 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~-~a~~l~~~~----~~~~~~~~d 646 (1053)
..++++|.| +|++|+.+++.|++.| .+|.+++|+.+ +.+++...+ .++..+.+|
T Consensus 5 ~~k~vlItGasggiG~~l~~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D 64 (248)
T PRK07806 5 PGKTALVTGSSRGIGADTAKILAGAG--------------------AHVVVNYRQKAPRANKVVAEIEAAGGRASAVGAD 64 (248)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHCC--------------------CEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcC
Confidence 347899999 6999999999999887 37888888643 444443322 245678899
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++|.+++.++++ +.|+||++++.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 94 (248)
T PRK07806 65 LTDEESVAALMDTAREEFGGLDALVLNASG 94 (248)
T ss_pred CCCHHHHHHHHHHHHHhCCCCcEEEECCCC
Confidence 999988776654 47999998864
|
|
| >COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.023 Score=62.80 Aligned_cols=116 Identities=23% Similarity=0.258 Sum_probs=71.5
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC----HHHHH----HHHhcCCCceEE
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY----LKDAE----EVIEGIPNAEAV 643 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~----~~~a~----~l~~~~~~~~~~ 643 (1053)
.+..+|+|+|+|+.|.+++.+|+..| +. .. ..+-.|.++.++++-.+.=+. ..|++ .+.+..|.+++.
T Consensus 28 l~~s~vlvvG~GglG~~~~~~la~aG-vg-~l--~i~D~d~v~~snL~rq~~~~~~dig~~Ka~~a~~~l~~ln~~v~v~ 103 (254)
T COG0476 28 LKDSRVLVVGAGGLGSPAAKYLALAG-VG-KL--TIVDFDTVELSNLQRQFLFTEADVGKPKAEVAAKALRKLNPLVEVV 103 (254)
T ss_pred HhhCCEEEEecChhHHHHHHHHHHcC-CC-eE--EEEcCCcccccccCceeeecccccCCcHHHHHHHHHHHhCCCCeEE
Confidence 45678999999999999999999988 31 11 111111233333322221111 11222 233445555544
Q ss_pred EecC-CCHHHHHHhhccccEEEecCCccc-cHHHHHHHHHhCCeEEEeec
Q 001559 644 QLDV-SDHKSLCKCISQVEIVISLLPASC-HVMVANACIEFKKHLVTASY 691 (1053)
Q Consensus 644 ~~d~-~d~~~l~~~i~~~DvVI~~~p~~~-~~~v~~aci~~g~~~vD~sy 691 (1053)
.... -+.+.+.+++++.|+|++++-.+. ...+..+|...++.+++.+.
T Consensus 104 ~~~~~l~~~~~~~~~~~~d~v~d~~dn~~~r~~iN~~~~~~~~pli~~~~ 153 (254)
T COG0476 104 AYLERLDEENAEELIAQFDVVLDCTDNFETRYLINDACVKLGIPLVHGGA 153 (254)
T ss_pred EeecccChhhHHHHhccCCEEEECCCCHHHHHHHHHHHHHhCCCeEeeee
Confidence 3332 255666889999999999997643 46678889999988888763
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.011 Score=64.78 Aligned_cols=77 Identities=19% Similarity=0.243 Sum_probs=61.4
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----C-CceEEEec
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----P-NAEAVQLD 646 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~-~~~~~~~d 646 (1053)
+.++++|.| +|++|+.++..|++.| .+|.+++|+.++++++.+.+ + ++..+.+|
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D 65 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEG--------------------CHLHLVARDADALEALAADLRAAHGVDVAVHALD 65 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcC--------------------CEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEec
Confidence 457899999 5899999999999987 38999999988877655432 2 36678899
Q ss_pred CCCHHHHHHhhc---cccEEEecCCc
Q 001559 647 VSDHKSLCKCIS---QVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~---~~DvVI~~~p~ 669 (1053)
++|.+++.++++ ..|++|++++.
T Consensus 66 ~~~~~~~~~~~~~~g~id~lv~~ag~ 91 (259)
T PRK06125 66 LSSPEAREQLAAEAGDIDILVNNAGA 91 (259)
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCC
Confidence 999888876655 48999999864
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.026 Score=70.17 Aligned_cols=112 Identities=15% Similarity=0.179 Sum_probs=81.8
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
..+|+|+|+|.+|+.+++.|.+.+ .+++++|.|+++++++.+. +..++..|.++.+.|
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g--------------------~~vvvID~d~~~v~~~~~~--g~~v~~GDat~~~~L 457 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANK--------------------MRITVLERDISAVNLMRKY--GYKVYYGDATQLELL 457 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCC--------------------CCEEEEECCHHHHHHHHhC--CCeEEEeeCCCHHHH
Confidence 467999999999999999998876 4799999999999887653 478899999999999
Q ss_pred HH-hhccccEEEecCCcccc-HHHHHHHHHh--CCeEEEeeccChhHHHHHHHHHHcCCeEE
Q 001559 654 CK-CISQVEIVISLLPASCH-VMVANACIEF--KKHLVTASYIDDSMSKLDEKAKGAGITIL 711 (1053)
Q Consensus 654 ~~-~i~~~DvVI~~~p~~~~-~~v~~aci~~--g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~l 711 (1053)
++ -+.++|+||.+++.... ..+...+.+. ..+++--+..+.+... -+++|+..+
T Consensus 458 ~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaRa~~~~~~~~----L~~~Ga~~v 515 (601)
T PRK03659 458 RAAGAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHILARARGRVEAHE----LLQAGVTQF 515 (601)
T ss_pred HhcCCccCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEEEEeCCHHHHHH----HHhCCCCEE
Confidence 84 48899999999987533 2333444333 2344444444444433 356777655
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.01 Score=64.62 Aligned_cols=66 Identities=23% Similarity=0.227 Sum_probs=51.5
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH-HHHHHHHhcC-CCceEEEecCCCH
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL-KDAEEVIEGI-PNAEAVQLDVSDH 650 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~-~~a~~l~~~~-~~~~~~~~d~~d~ 650 (1053)
+++|+|+| +|++|+.+++.|++.| .+|.+.+|+. ++.+.+.+.. .++.++.+|++|.
T Consensus 1 ~k~vlItGasggiG~~ia~~l~~~g--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~ 60 (251)
T PRK06924 1 MRYVIITGTSQGLGEAIANQLLEKG--------------------THVISISRTENKELTKLAEQYNSNLTFHSLDLQDV 60 (251)
T ss_pred CcEEEEecCCchHHHHHHHHHHhcC--------------------CEEEEEeCCchHHHHHHHhccCCceEEEEecCCCH
Confidence 36799999 7999999999999987 3788889986 5555555443 3577889999999
Q ss_pred HHHHHhhcc
Q 001559 651 KSLCKCISQ 659 (1053)
Q Consensus 651 ~~l~~~i~~ 659 (1053)
+++.+++++
T Consensus 61 ~~~~~~~~~ 69 (251)
T PRK06924 61 HELETNFNE 69 (251)
T ss_pred HHHHHHHHH
Confidence 888776654
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0093 Score=64.48 Aligned_cols=76 Identities=24% Similarity=0.351 Sum_probs=57.7
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC-HHHHHHHHhcC----C-CceEEEec
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY-LKDAEEVIEGI----P-NAEAVQLD 646 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~-~~~a~~l~~~~----~-~~~~~~~d 646 (1053)
.++|+|.| +|++|+.+++.|++.| .+|.+++|+ .++.+++...+ + .+..+.+|
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~g--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D 65 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAAG--------------------YRVAIHYHRSAAEADALAAELNALRPGSAAALQAD 65 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC--------------------CEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcC
Confidence 47899999 7999999999999987 378888875 44444443222 1 36778899
Q ss_pred CCCHHHHHHhhcc-------ccEEEecCCc
Q 001559 647 VSDHKSLCKCISQ-------VEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~~-------~DvVI~~~p~ 669 (1053)
++|.+++.++++. .|+||++++.
T Consensus 66 l~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 95 (249)
T PRK09135 66 LLDPDALPELVAACVAAFGRLDALVNNASS 95 (249)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 9999888777663 6999999864
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.03 Score=71.56 Aligned_cols=92 Identities=18% Similarity=0.164 Sum_probs=69.5
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
|+|+|.| +|++|+.+++.|.+.| .+|.+++|+.... . ..++..+.+|++|.+.+
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G--------------------~~Vv~l~R~~~~~--~---~~~v~~v~gDL~D~~~l 55 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQG--------------------HEVVGIARHRPDS--W---PSSADFIAADIRDATAV 55 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc--------------------CEEEEEECCchhh--c---ccCceEEEeeCCCHHHH
Confidence 5799999 6999999999999887 3788889874321 1 12477889999999999
Q ss_pred HHhhccccEEEecCCccc---------cHHHHHHHHHhCC-eEEEeec
Q 001559 654 CKCISQVEIVISLLPASC---------HVMVANACIEFKK-HLVTASY 691 (1053)
Q Consensus 654 ~~~i~~~DvVI~~~p~~~---------~~~v~~aci~~g~-~~vD~sy 691 (1053)
.++++++|+||+++.... ...+.++|.+.|. ++|-+|.
T Consensus 56 ~~al~~vD~VVHlAa~~~~~~~vNv~GT~nLLeAa~~~gvkr~V~iSS 103 (854)
T PRK05865 56 ESAMTGADVVAHCAWVRGRNDHINIDGTANVLKAMAETGTGRIVFTSS 103 (854)
T ss_pred HHHHhCCCEEEECCCcccchHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence 999999999999985421 1234567777764 5666654
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.015 Score=63.80 Aligned_cols=76 Identities=20% Similarity=0.200 Sum_probs=56.9
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhc----CCCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEG----IPNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~----~~~~~~~~~d~ 647 (1053)
+.++++|.| +|++|+++++.|++.| .+|.+++|+.. .+++.+. -.++..+.+|+
T Consensus 7 ~~k~vlVtGas~gIG~~la~~l~~~G--------------------~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~D~ 65 (260)
T PRK12823 7 AGKVVVVTGAAQGIGRGVALRAAAEG--------------------ARVVLVDRSEL-VHEVAAELRAAGGEALALTADL 65 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC--------------------CEEEEEeCchH-HHHHHHHHHhcCCeEEEEEEeC
Confidence 457899999 6999999999999987 37888999843 3333322 22456788999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+|.+++.++++ ..|++|++++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~id~lv~nAg~ 94 (260)
T PRK12823 66 ETYAGAQAAMAAAVEAFGRIDVLINNVGG 94 (260)
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEECCcc
Confidence 99877766555 47999998863
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.012 Score=63.55 Aligned_cols=75 Identities=21% Similarity=0.219 Sum_probs=56.8
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
+++++|.| +|++|+.+++.|++.| .+|.+.+|+.+...+..... ++..+.+|++|.++
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~~-~~~~~~~D~~~~~~ 60 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQG--------------------QPVIVSYRTHYPAIDGLRQA-GAQCIQADFSTNAG 60 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCC--------------------CeEEEEeCCchhHHHHHHHc-CCEEEEcCCCCHHH
Confidence 36799999 6999999999999887 37888999876543333332 36778899999887
Q ss_pred HHHhhc-------cccEEEecCCc
Q 001559 653 LCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 653 l~~~i~-------~~DvVI~~~p~ 669 (1053)
+.+++. ..|++|++++.
T Consensus 61 ~~~~~~~~~~~~~~id~lv~~ag~ 84 (236)
T PRK06483 61 IMAFIDELKQHTDGLRAIIHNASD 84 (236)
T ss_pred HHHHHHHHHhhCCCccEEEECCcc
Confidence 765543 37999999864
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0093 Score=68.39 Aligned_cols=79 Identities=20% Similarity=0.138 Sum_probs=59.6
Q ss_pred CCCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH-----HHHHHHhc----CCCc
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK-----DAEEVIEG----IPNA 640 (1053)
Q Consensus 571 ~~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~-----~a~~l~~~----~~~~ 640 (1053)
..++++|+|.| +|++|+.+++.|++.| .+|.+++|+.+ +++.+.+. -.++
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 62 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLSKG--------------------YEVHGIIRRSSNFNTQRLDHIYIDPHPNKARM 62 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCC--------------------CEEEEEecccccccccchhhhccccccccCce
Confidence 34568899999 6999999999999987 37888877543 23333211 1236
Q ss_pred eEEEecCCCHHHHHHhhcc--ccEEEecCCc
Q 001559 641 EAVQLDVSDHKSLCKCISQ--VEIVISLLPA 669 (1053)
Q Consensus 641 ~~~~~d~~d~~~l~~~i~~--~DvVI~~~p~ 669 (1053)
+.+.+|++|.+.+.+++++ .|+||+++..
T Consensus 63 ~~~~~Dl~d~~~~~~~~~~~~~d~Vih~A~~ 93 (340)
T PLN02653 63 KLHYGDLSDASSLRRWLDDIKPDEVYNLAAQ 93 (340)
T ss_pred EEEEecCCCHHHHHHHHHHcCCCEEEECCcc
Confidence 7888999999999888875 5999999864
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.012 Score=63.81 Aligned_cols=77 Identities=25% Similarity=0.299 Sum_probs=59.3
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEE-ECCHHHHHHHHhcCC-CceEEEecCCC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVA-SLYLKDAEEVIEGIP-NAEAVQLDVSD 649 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~-~r~~~~a~~l~~~~~-~~~~~~~d~~d 649 (1053)
+.++++|.| +|++|+.+++.|++.| .+|.+. .|+.++++++...++ ++.++.+|++|
T Consensus 4 ~~k~ilItGas~gIG~~la~~l~~~G--------------------~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 63 (253)
T PRK08642 4 SEQTVLVTGGSRGLGAAIARAFAREG--------------------ARVVVNYHQSEDAAEALADELGDRAIALQADVTD 63 (253)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCC--------------------CeEEEEcCCCHHHHHHHHHHhCCceEEEEcCCCC
Confidence 357899999 7999999999999987 256654 456667676665543 46778899999
Q ss_pred HHHHHHhhcc--------ccEEEecCCc
Q 001559 650 HKSLCKCISQ--------VEIVISLLPA 669 (1053)
Q Consensus 650 ~~~l~~~i~~--------~DvVI~~~p~ 669 (1053)
.+++.+++++ .|+||++++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~id~li~~ag~ 91 (253)
T PRK08642 64 REQVQAMFATATEHFGKPITTVVNNALA 91 (253)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEECCCc
Confidence 8888776653 7999999864
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0097 Score=65.61 Aligned_cols=77 Identities=18% Similarity=0.240 Sum_probs=56.6
Q ss_pred CCCeEEEEcC---chhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC------HHHHHHHHhcCCCceEE
Q 001559 573 GTSSVLIIGA---GRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY------LKDAEEVIEGIPNAEAV 643 (1053)
Q Consensus 573 ~~~~VlIiGa---G~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~------~~~a~~l~~~~~~~~~~ 643 (1053)
+.+.++|.|+ +++|+++|+.|++.| .+|.+..|+ .+.++++.+...++..+
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~~G--------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHAAG--------------------AELGITYLPDEKGRFEKKVRELTEPLNPSLFL 64 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHHCC--------------------CEEEEEecCcccchHHHHHHHHHhccCcceEe
Confidence 3578999996 599999999999988 267776543 33445554443446678
Q ss_pred EecCCCHHHHHHhhc-------cccEEEecCCc
Q 001559 644 QLDVSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 644 ~~d~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++|++|.+++.++++ ..|++||+++.
T Consensus 65 ~~Dl~d~~~v~~~~~~~~~~~g~iD~lv~nag~ 97 (258)
T PRK07370 65 PCDVQDDAQIEETFETIKQKWGKLDILVHCLAF 97 (258)
T ss_pred ecCcCCHHHHHHHHHHHHHHcCCCCEEEEcccc
Confidence 899999988776654 46999999875
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0099 Score=68.36 Aligned_cols=86 Identities=22% Similarity=0.315 Sum_probs=60.1
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
.+.++|.|||+|.+|+.+|+.|...| .+|.+++|+.+..... .+ . ..
T Consensus 144 l~g~~VgIIG~G~IG~~vA~~L~~~G--------------------~~V~~~d~~~~~~~~~------~~-----~--~~ 190 (330)
T PRK12480 144 VKNMTVAIIGTGRIGAATAKIYAGFG--------------------ATITAYDAYPNKDLDF------LT-----Y--KD 190 (330)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCC--------------------CEEEEEeCChhHhhhh------hh-----c--cC
Confidence 45678999999999999999998876 4899999987543211 11 0 13
Q ss_pred HHHHhhccccEEEecCCcccc--HHHH---HHHHHhCCeEEEee
Q 001559 652 SLCKCISQVEIVISLLPASCH--VMVA---NACIEFKKHLVTAS 690 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~~~~--~~v~---~aci~~g~~~vD~s 690 (1053)
++.++++++|+|+.++|..-. ..+. ...++.|..+|+++
T Consensus 191 ~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~a 234 (330)
T PRK12480 191 SVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAA 234 (330)
T ss_pred CHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcC
Confidence 577889999999999997642 1121 22345566666665
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.013 Score=63.65 Aligned_cols=75 Identities=21% Similarity=0.231 Sum_probs=58.5
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecCCC
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDVSD 649 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~~d 649 (1053)
++++|.| +|++|+.+++.|++.| .+|.+++|+.++.+++.+.+ .++..+.+|++|
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 61 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAG--------------------ANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTK 61 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCC
Confidence 5799999 7999999999999887 37999999988777665432 246778899999
Q ss_pred HHHHHHhh-------ccccEEEecCCc
Q 001559 650 HKSLCKCI-------SQVEIVISLLPA 669 (1053)
Q Consensus 650 ~~~l~~~i-------~~~DvVI~~~p~ 669 (1053)
.+++.+++ ...|+||++...
T Consensus 62 ~~~~~~~~~~~~~~~~~~d~vi~~a~~ 88 (255)
T TIGR01963 62 EDEIADMIAAAAAEFGGLDILVNNAGI 88 (255)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 88655443 457999998754
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0095 Score=72.90 Aligned_cols=78 Identities=24% Similarity=0.246 Sum_probs=63.5
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
+.++++|+| +|++|+.+++.|++.| .+|.+++|+.++++++.+.+ .++.++.+|+
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l~~~G--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv 373 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAFAREG--------------------AEVVASDIDEAAAERTAELIRAAGAVAHAYRVDV 373 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCC
Confidence 457899999 6999999999999987 37999999988887766543 2467889999
Q ss_pred CCHHHHHHhhcc-------ccEEEecCCcc
Q 001559 648 SDHKSLCKCISQ-------VEIVISLLPAS 670 (1053)
Q Consensus 648 ~d~~~l~~~i~~-------~DvVI~~~p~~ 670 (1053)
+|.+++.+++++ .|+|||+++..
T Consensus 374 ~~~~~~~~~~~~~~~~~g~id~lv~~Ag~~ 403 (582)
T PRK05855 374 SDADAMEAFAEWVRAEHGVPDIVVNNAGIG 403 (582)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEECCccC
Confidence 999888776654 69999999753
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.014 Score=65.70 Aligned_cols=77 Identities=22% Similarity=0.289 Sum_probs=52.8
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC--------CCceEEE-
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI--------PNAEAVQ- 644 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~--------~~~~~~~- 644 (1053)
.++|.|||+|.+|..+|..|+..| .+|.++|++.+.+++..+.+ ++.....
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~G--------------------~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 62 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFHG--------------------FDVTIYDISDEALEKAKERIAKLADRYVRDLEATKE 62 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhcC--------------------CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChh
Confidence 368999999999999999999887 38999999987666554321 0000000
Q ss_pred -------ecCCCHHHHHHhhccccEEEecCCcc
Q 001559 645 -------LDVSDHKSLCKCISQVEIVISLLPAS 670 (1053)
Q Consensus 645 -------~d~~d~~~l~~~i~~~DvVI~~~p~~ 670 (1053)
-.++-..++.+.++++|+||.|+|-.
T Consensus 63 ~~~~~~~~~i~~~~d~~~a~~~aDlVieavpe~ 95 (287)
T PRK08293 63 APAEAALNRITLTTDLAEAVKDADLVIEAVPED 95 (287)
T ss_pred hhHHHHHcCeEEeCCHHHHhcCCCEEEEeccCC
Confidence 00001234667788999999999955
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.015 Score=63.36 Aligned_cols=78 Identities=26% Similarity=0.330 Sum_probs=59.4
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC--CceEEEecCC
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP--NAEAVQLDVS 648 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~--~~~~~~~d~~ 648 (1053)
.+.++|+|.| +|++|+.+++.|++.| .+|.+++|+.+..+ ...... ++..+.+|++
T Consensus 13 ~~~k~vlItGas~~IG~~la~~l~~~G--------------------~~Vi~~~r~~~~~~-~~~~~~~~~~~~~~~Dl~ 71 (255)
T PRK06841 13 LSGKVAVVTGGASGIGHAIAELFAAKG--------------------ARVALLDRSEDVAE-VAAQLLGGNAKGLVCDVS 71 (255)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHH-HHHHhhCCceEEEEecCC
Confidence 3467899999 6999999999999987 37889999876433 232222 3567889999
Q ss_pred CHHHHHHhhc-------cccEEEecCCcc
Q 001559 649 DHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 649 d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+.+++.+++. ..|+||++++..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 100 (255)
T PRK06841 72 DSQSVEAAVAAVISAFGRIDILVNSAGVA 100 (255)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 9888776655 469999999753
|
|
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.019 Score=64.15 Aligned_cols=80 Identities=25% Similarity=0.270 Sum_probs=59.1
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHH----hcCC-C-ceEEE
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVI----EGIP-N-AEAVQ 644 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~----~~~~-~-~~~~~ 644 (1053)
...+.|+|-| +.++|.++|..|++.| .++.++.|..++.+++. +..+ . +.+++
T Consensus 10 ~~~kvVvITGASsGIG~~lA~~la~~G--------------------~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~ 69 (282)
T KOG1205|consen 10 LAGKVVLITGASSGIGEALAYELAKRG--------------------AKLVLVARRARRLERVAEELRKLGSLEKVLVLQ 69 (282)
T ss_pred hCCCEEEEeCCCcHHHHHHHHHHHhCC--------------------CceEEeehhhhhHHHHHHHHHHhCCcCccEEEe
Confidence 3467788889 6899999999999998 25555555555555553 3332 3 78899
Q ss_pred ecCCCHHHHHHh-------hccccEEEecCCccc
Q 001559 645 LDVSDHKSLCKC-------ISQVEIVISLLPASC 671 (1053)
Q Consensus 645 ~d~~d~~~l~~~-------i~~~DvVI~~~p~~~ 671 (1053)
+|++|.++..+. +.+.|++||-++...
T Consensus 70 ~Dvs~~~~~~~~~~~~~~~fg~vDvLVNNAG~~~ 103 (282)
T KOG1205|consen 70 LDVSDEESVKKFVEWAIRHFGRVDVLVNNAGISL 103 (282)
T ss_pred CccCCHHHHHHHHHHHHHhcCCCCEEEecCcccc
Confidence 999998887744 346899999998765
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.012 Score=64.32 Aligned_cols=77 Identities=18% Similarity=0.217 Sum_probs=58.5
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH-HHHHHHhcC----CCceEEEec
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK-DAEEVIEGI----PNAEAVQLD 646 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~-~a~~l~~~~----~~~~~~~~d 646 (1053)
+.+.++|.| +|++|+++++.|++.| .+|.+.+|+.+ .++++.+.+ .++..+.+|
T Consensus 7 ~~k~~lVtG~s~gIG~~ia~~l~~~G--------------------~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D 66 (254)
T PRK06114 7 DGQVAFVTGAGSGIGQRIAIGLAQAG--------------------ADVALFDLRTDDGLAETAEHIEAAGRRAIQIAAD 66 (254)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--------------------CEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcC
Confidence 457899998 7999999999999987 37888888643 334443322 246678899
Q ss_pred CCCHHHHHHhhcc-------ccEEEecCCc
Q 001559 647 VSDHKSLCKCISQ-------VEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~~-------~DvVI~~~p~ 669 (1053)
++|.+++.+++++ .|+||++++.
T Consensus 67 ~~~~~~i~~~~~~~~~~~g~id~li~~ag~ 96 (254)
T PRK06114 67 VTSKADLRAAVARTEAELGALTLAVNAAGI 96 (254)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 9999888776654 5999999875
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.017 Score=63.25 Aligned_cols=76 Identities=21% Similarity=0.235 Sum_probs=57.6
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEEC-CHHHHHHHHhcCCCceEEEecCCCH
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASL-YLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r-~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
..++++|.| +|++|+.+++.|++.| .+|.+..+ +.+.++++... ++..+.+|++|.
T Consensus 6 ~~k~~lItGas~gIG~~~a~~l~~~G--------------------~~v~~~~~~~~~~~~~l~~~--~~~~~~~Dl~~~ 63 (255)
T PRK06463 6 KGKVALITGGTRGIGRAIAEAFLREG--------------------AKVAVLYNSAENEAKELREK--GVFTIKCDVGNR 63 (255)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC--------------------CEEEEEeCCcHHHHHHHHhC--CCeEEEecCCCH
Confidence 457899999 6999999999999987 26666655 44445555433 467889999999
Q ss_pred HHHHHhhc-------cccEEEecCCcc
Q 001559 651 KSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 651 ~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+++.++++ ..|+||++++..
T Consensus 64 ~~~~~~~~~~~~~~~~id~li~~ag~~ 90 (255)
T PRK06463 64 DQVKKSKEVVEKEFGRVDVLVNNAGIM 90 (255)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 88877665 469999998653
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.022 Score=68.65 Aligned_cols=97 Identities=23% Similarity=0.232 Sum_probs=68.8
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCC----
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVS---- 648 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~---- 648 (1053)
...+|+|+|+|.+|..++..+...| ..|.+++++.++.+... .++ .+.+.+|..
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lG--------------------A~V~v~d~~~~rle~a~-~lG-a~~v~v~~~e~g~ 220 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLG--------------------AIVRAFDTRPEVKEQVQ-SMG-AEFLELDFKEEGG 220 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHH-HcC-CeEEecccccccc
Confidence 3589999999999999999998887 26999999988766544 354 444444431
Q ss_pred ----------CH------HHHHHhhccccEEEecC-----Ccc-ccHHHHHHHHHhCCeEEEeec
Q 001559 649 ----------DH------KSLCKCISQVEIVISLL-----PAS-CHVMVANACIEFKKHLVTASY 691 (1053)
Q Consensus 649 ----------d~------~~l~~~i~~~DvVI~~~-----p~~-~~~~v~~aci~~g~~~vD~sy 691 (1053)
+. +.+.+.++++|+||+++ |.. +-..-+.+.++.|..+||++.
T Consensus 221 ~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 221 SGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred ccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeee
Confidence 11 11456678899999999 322 122334567889999999974
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.015 Score=61.47 Aligned_cols=83 Identities=19% Similarity=0.256 Sum_probs=66.5
Q ss_pred CCCCeEEEEc--CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCC
Q 001559 572 KGTSSVLIIG--AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSD 649 (1053)
Q Consensus 572 ~~~~~VlIiG--aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d 649 (1053)
...+.|+|.| .|++|.++++.+++.| .+|..+.|+.++...|..... .....+|+++
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G--------------------~~V~AtaR~~e~M~~L~~~~g-l~~~kLDV~~ 63 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNG--------------------YLVYATARRLEPMAQLAIQFG-LKPYKLDVSK 63 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCC--------------------eEEEEEccccchHhhHHHhhC-CeeEEeccCC
Confidence 3467899999 4999999999999988 489999999998888875543 6788899999
Q ss_pred HHHHHHhhcc--------ccEEEecCCccccHHH
Q 001559 650 HKSLCKCISQ--------VEIVISLLPASCHVMV 675 (1053)
Q Consensus 650 ~~~l~~~i~~--------~DvVI~~~p~~~~~~v 675 (1053)
++++.+..++ -|+++|-++..+..+.
T Consensus 64 ~~~V~~v~~evr~~~~Gkld~L~NNAG~~C~~Pa 97 (289)
T KOG1209|consen 64 PEEVVTVSGEVRANPDGKLDLLYNNAGQSCTFPA 97 (289)
T ss_pred hHHHHHHHHHHhhCCCCceEEEEcCCCCCccccc
Confidence 8887665442 5899998887765443
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.012 Score=67.72 Aligned_cols=88 Identities=16% Similarity=0.215 Sum_probs=58.8
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHh-CCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLAS-FGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~-~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
.+.++|.|||+|.+|+.+|+.|++ .+ .+|...|++..... ... +. -.
T Consensus 144 l~g~~VgIIG~G~IG~~vA~~L~~~~g--------------------~~V~~~d~~~~~~~--~~~---~~-------~~ 191 (332)
T PRK08605 144 IKDLKVAVIGTGRIGLAVAKIFAKGYG--------------------SDVVAYDPFPNAKA--ATY---VD-------YK 191 (332)
T ss_pred eCCCEEEEECCCHHHHHHHHHHHhcCC--------------------CEEEEECCCccHhH--Hhh---cc-------cc
Confidence 456889999999999999999953 33 47888888754321 110 11 11
Q ss_pred HHHHHhhccccEEEecCCccccHH-H----HHHHHHhCCeEEEeec
Q 001559 651 KSLCKCISQVEIVISLLPASCHVM-V----ANACIEFKKHLVTASY 691 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~~~-v----~~aci~~g~~~vD~sy 691 (1053)
.++.++++++|+|+.++|..-... + ....++.|+.+|+++-
T Consensus 192 ~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sR 237 (332)
T PRK08605 192 DTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCAR 237 (332)
T ss_pred CCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCC
Confidence 357788999999999999754221 1 1233466777777763
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.017 Score=67.22 Aligned_cols=114 Identities=15% Similarity=0.194 Sum_probs=69.2
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
++|.|||+|.+|.+++..|.+.| + .+.+.+++.++.+..... . ... .|- ...++.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G-~-------------------~v~i~~~~~~~~~~~~a~-~-~~~--~~~-~~~~~~ 55 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAG-P-------------------DVFIIGYDPSAAQLARAL-G-FGV--IDE-LAADLQ 55 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcC-C-------------------CeEEEEeCCCHHHHHHHh-c-CCC--Ccc-cccCHH
Confidence 36999999999999999999887 2 567777776554332211 1 111 110 123456
Q ss_pred HhhccccEEEecCCccccHHHHHH----HHHhCCeEEEeeccChhHHHHHHHHHHcCCeEEec
Q 001559 655 KCISQVEIVISLLPASCHVMVANA----CIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGE 713 (1053)
Q Consensus 655 ~~i~~~DvVI~~~p~~~~~~v~~a----ci~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~l~g 713 (1053)
+.++++|+||-|+|......+... ++..++.+.|++-.......-.+.....+..++.+
T Consensus 56 ~~~~~aDlVilavP~~~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~ 118 (359)
T PRK06545 56 RAAAEADLIVLAVPVDATAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGG 118 (359)
T ss_pred HHhcCCCEEEEeCCHHHHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEee
Confidence 778899999999998654444332 24457778888766533222111222345566654
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.022 Score=64.08 Aligned_cols=96 Identities=18% Similarity=0.112 Sum_probs=57.8
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH-------------------HHHH-
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL-------------------KDAE- 631 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~-------------------~~a~- 631 (1053)
.+..+|+|+|+|++|..+|++|+..| + -+++++|.+. .|++
T Consensus 17 L~~s~VLIvG~gGLG~EiaKnLalaG-V------------------g~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea 77 (286)
T cd01491 17 LQKSNVLISGLGGLGVEIAKNLILAG-V------------------KSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEA 77 (286)
T ss_pred HhcCcEEEEcCCHHHHHHHHHHHHcC-C------------------CeEEEEcCCccchhhcccCccCChHHhCHHHHHH
Confidence 45688999999999999999999988 3 2566666431 2332
Q ss_pred ---HHHhcCCCceEEEecCCCHHHHHHhhccccEEEecCCcc-ccHHHHHHHHHhCCeEEEe
Q 001559 632 ---EVIEGIPNAEAVQLDVSDHKSLCKCISQVEIVISLLPAS-CHVMVANACIEFKKHLVTA 689 (1053)
Q Consensus 632 ---~l~~~~~~~~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~-~~~~v~~aci~~g~~~vD~ 689 (1053)
++.+..|.+++...+-. ...+.++++|+||.+.... ....+.+.|.++++.++..
T Consensus 78 ~~~~L~eLNp~V~V~~~~~~---~~~~~l~~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a 136 (286)
T cd01491 78 SQARLAELNPYVPVTVSTGP---LTTDELLKFQVVVLTDASLEDQLKINEFCHSPGIKFISA 136 (286)
T ss_pred HHHHHHHHCCCCEEEEEecc---CCHHHHhcCCEEEEecCCHHHHHHHHHHHHHcCCEEEEE
Confidence 33344555544333221 1125567788888876421 1234455566655555444
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.035 Score=63.15 Aligned_cols=76 Identities=22% Similarity=0.309 Sum_probs=53.9
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceE-------
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEA------- 642 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~------- 642 (1053)
.++|.|||+|.+|..++..|++.| .+|++++++.++++++.+.. +....
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g--------------------~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKG--------------------LQVVLIDVMEGALERARGVIERALGVYAPLGIASAG 63 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCC--------------------CeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHH
Confidence 468999999999999999999876 37999999988877665421 10000
Q ss_pred -EEecCCCHHHHHHhhccccEEEecCCccc
Q 001559 643 -VQLDVSDHKSLCKCISQVEIVISLLPASC 671 (1053)
Q Consensus 643 -~~~d~~d~~~l~~~i~~~DvVI~~~p~~~ 671 (1053)
..+.. ..++.+.++++|+||.|+|...
T Consensus 64 ~~~i~~--~~~~~~~~~~aDlVi~av~~~~ 91 (311)
T PRK06130 64 MGRIRM--EAGLAAAVSGADLVIEAVPEKL 91 (311)
T ss_pred hhceEE--eCCHHHHhccCCEEEEeccCcH
Confidence 00011 1234566789999999999764
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.013 Score=67.03 Aligned_cols=77 Identities=21% Similarity=0.179 Sum_probs=57.0
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
..+.++|.|||+|.+|++++..|...| .+|.+.+|+..+..+.+... ++..
T Consensus 14 ~L~gktIgIIG~GsmG~AlA~~L~~sG--------------------~~Vvv~~r~~~~s~~~A~~~-G~~~-------- 64 (330)
T PRK05479 14 LIKGKKVAIIGYGSQGHAHALNLRDSG--------------------VDVVVGLREGSKSWKKAEAD-GFEV-------- 64 (330)
T ss_pred hhCCCEEEEEeeHHHHHHHHHHHHHCC--------------------CEEEEEECCchhhHHHHHHC-CCee--------
Confidence 456789999999999999999999887 37888888755555554443 2221
Q ss_pred HHHHHhhccccEEEecCCccccHHHH
Q 001559 651 KSLCKCISQVEIVISLLPASCHVMVA 676 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~~~v~ 676 (1053)
.+..++++++|+|+.++|......+.
T Consensus 65 ~s~~eaa~~ADVVvLaVPd~~~~~V~ 90 (330)
T PRK05479 65 LTVAEAAKWADVIMILLPDEVQAEVY 90 (330)
T ss_pred CCHHHHHhcCCEEEEcCCHHHHHHHH
Confidence 13567788999999999987655554
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.006 Score=69.57 Aligned_cols=88 Identities=20% Similarity=0.270 Sum_probs=61.2
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
.+.++|.|+|.|.+|+.+|+.|...| .+|.+++++.++. +.+... ....
T Consensus 134 l~g~tvgIvG~G~IG~~vA~~l~afG--------------------~~V~~~~~~~~~~-------~~~~~~----~~~~ 182 (312)
T PRK15469 134 REDFTIGILGAGVLGSKVAQSLQTWG--------------------FPLRCWSRSRKSW-------PGVQSF----AGRE 182 (312)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC--------------------CEEEEEeCCCCCC-------CCceee----cccc
Confidence 45689999999999999999999876 4888999865331 111111 1235
Q ss_pred HHHHhhccccEEEecCCccccH-HH----HHHHHHhCCeEEEee
Q 001559 652 SLCKCISQVEIVISLLPASCHV-MV----ANACIEFKKHLVTAS 690 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~~~~~-~v----~~aci~~g~~~vD~s 690 (1053)
+|.++++++|+|+.++|..-.. .+ ..++++.|+.+|+++
T Consensus 183 ~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 226 (312)
T PRK15469 183 ELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLA 226 (312)
T ss_pred cHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECC
Confidence 7889999999999999975321 11 123456666677765
|
|
| >KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.014 Score=60.97 Aligned_cols=78 Identities=23% Similarity=0.274 Sum_probs=62.5
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCC---ceEEEecCC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPN---AEAVQLDVS 648 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~---~~~~~~d~~ 648 (1053)
+.+.++|.| +-++|++++..|++.| .+|.|++++.+.|++.+..++. -..+.+|++
T Consensus 13 ~sk~~~vtGg~sGIGrAia~~la~~G--------------------arv~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS 72 (256)
T KOG1200|consen 13 MSKVAAVTGGSSGIGRAIAQLLAKKG--------------------ARVAVADLDSAAAEATAGDLGGYGDHSAFSCDVS 72 (256)
T ss_pred hcceeEEecCCchHHHHHHHHHHhcC--------------------cEEEEeecchhhHHHHHhhcCCCCccceeeeccC
Confidence 345677777 5689999999999998 3899999999999999988764 457889999
Q ss_pred CHHHHHHhhc-------cccEEEecCCcc
Q 001559 649 DHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 649 d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+.++.+..++ ..++++||++..
T Consensus 73 ~a~~v~~~l~e~~k~~g~psvlVncAGIt 101 (256)
T KOG1200|consen 73 KAHDVQNTLEEMEKSLGTPSVLVNCAGIT 101 (256)
T ss_pred cHHHHHHHHHHHHHhcCCCcEEEEcCccc
Confidence 8766655443 469999999865
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.015 Score=63.69 Aligned_cols=78 Identities=15% Similarity=0.199 Sum_probs=58.3
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH-HHHHHHhcC-CCceEEEecCCC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK-DAEEVIEGI-PNAEAVQLDVSD 649 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~-~a~~l~~~~-~~~~~~~~d~~d 649 (1053)
+.++++|.| +|++|+++++.|++.| .+|.+++|+.. ++.+..+.. .++..+.+|++|
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G--------------------~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 66 (251)
T PRK12481 7 NGKVAIITGCNTGLGQGMAIGLAKAG--------------------ADIVGVGVAEAPETQAQVEALGRKFHFITADLIQ 66 (251)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC--------------------CEEEEecCchHHHHHHHHHHcCCeEEEEEeCCCC
Confidence 457899999 7999999999999987 37888888642 233333333 346778999999
Q ss_pred HHHHHHhhc-------cccEEEecCCcc
Q 001559 650 HKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 650 ~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
.+++.++++ ..|++|++++..
T Consensus 67 ~~~~~~~~~~~~~~~g~iD~lv~~ag~~ 94 (251)
T PRK12481 67 QKDIDSIVSQAVEVMGHIDILINNAGII 94 (251)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 988877765 369999998753
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.012 Score=68.81 Aligned_cols=96 Identities=16% Similarity=0.075 Sum_probs=63.6
Q ss_pred CCCCeEEEE----c-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHh-------cC--
Q 001559 572 KGTSSVLII----G-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIE-------GI-- 637 (1053)
Q Consensus 572 ~~~~~VlIi----G-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~-------~~-- 637 (1053)
..+++|+|+ | +|++|+.+++.|.+.| .+|++++|+......+.. .+
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G--------------------~~V~~l~R~~~~~~~~~~~~~~~~~~l~~ 109 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAG--------------------HEVTLFTRGKEPSQKMKKEPFSRFSELSS 109 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHCC--------------------CEEEEEecCCcchhhhccCchhhhhHhhh
Confidence 446789999 8 6999999999999987 389999998654332210 11
Q ss_pred CCceEEEecCCCHHHHHHhh--ccccEEEecCCccc--cHHHHHHHHHhCC-eEEEee
Q 001559 638 PNAEAVQLDVSDHKSLCKCI--SQVEIVISLLPASC--HVMVANACIEFKK-HLVTAS 690 (1053)
Q Consensus 638 ~~~~~~~~d~~d~~~l~~~i--~~~DvVI~~~p~~~--~~~v~~aci~~g~-~~vD~s 690 (1053)
.+++.+..|..| +.+.+ .++|+||++..... ...++++|.++|+ ++|-+|
T Consensus 110 ~~v~~v~~D~~d---~~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~S 164 (378)
T PLN00016 110 AGVKTVWGDPAD---VKSKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCS 164 (378)
T ss_pred cCceEEEecHHH---HHhhhccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 246778887755 44444 46899999865322 2345566666664 455443
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.025 Score=63.86 Aligned_cols=97 Identities=19% Similarity=0.132 Sum_probs=60.9
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----------CCceEE
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----------PNAEAV 643 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----------~~~~~~ 643 (1053)
.++|.|||+|.+|+.+|..|+..| .+|++.|++++.+++..+.+ ...+..
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G--------------------~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~ 64 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAG--------------------VDVLVFETTEELATAGRNRIEKSLERAVSRGKLTER 64 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCC--------------------CEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChh
Confidence 458999999999999999999887 48999999998876632211 001000
Q ss_pred -----EecCCCHHHHHHhhccccEEEecCCccccH--H---HHHHHH-HhCCeEEEeec
Q 001559 644 -----QLDVSDHKSLCKCISQVEIVISLLPASCHV--M---VANACI-EFKKHLVTASY 691 (1053)
Q Consensus 644 -----~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~--~---v~~aci-~~g~~~vD~sy 691 (1053)
.-.++-..++ +.++++|+||.|+|-.... . ..+.+. ..++.+.+.+.
T Consensus 65 ~~~~~~~~l~~~~~~-~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS 122 (286)
T PRK07819 65 ERDAALARLRFTTDL-GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTS 122 (286)
T ss_pred hHHHHHhCeEeeCCH-HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence 0000001223 3468999999999876541 1 123333 56666666554
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.017 Score=64.18 Aligned_cols=77 Identities=17% Similarity=0.192 Sum_probs=57.6
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHH-------HHHHHh----cCCCc
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKD-------AEEVIE----GIPNA 640 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~-------a~~l~~----~~~~~ 640 (1053)
++++++|.| +|++|+.+++.|++.| .+|.+++|+.+. .+++.+ .-.++
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~ 64 (273)
T PRK08278 5 SGKTLFITGASRGIGLAIALRAARDG--------------------ANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQA 64 (273)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--------------------CEEEEEecccccccchhhHHHHHHHHHHhcCCce
Confidence 357899999 7999999999999987 378888887542 222222 22246
Q ss_pred eEEEecCCCHHHHHHhhc-------cccEEEecCCc
Q 001559 641 EAVQLDVSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 641 ~~~~~d~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
..+.+|+++.+++.++++ ..|+||++++.
T Consensus 65 ~~~~~D~~~~~~i~~~~~~~~~~~g~id~li~~ag~ 100 (273)
T PRK08278 65 LPLVGDVRDEDQVAAAVAKAVERFGGIDICVNNASA 100 (273)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 678899999988876665 57999999875
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.022 Score=59.15 Aligned_cols=78 Identities=21% Similarity=0.290 Sum_probs=59.4
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
+++.++|.| +|++|+.+++.|++.| .+|.+.+|+.+.+++..+.+ +.+.++.+|+
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G--------------------~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl 74 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQG--------------------AKVIVTDIDQESGQATVEEITNLGGEALFVSYDM 74 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccC
Confidence 457889999 5789999999999887 37999999987765554332 2356788999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCcc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
++.+++.++++ ..|++||+++..
T Consensus 75 ~~~~~v~~~v~~~~~~~G~iDilVnnAG~~ 104 (169)
T PRK06720 75 EKQGDWQRVISITLNAFSRIDMLFQNAGLY 104 (169)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 98887766542 479999998753
|
|
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.013 Score=64.61 Aligned_cols=78 Identities=9% Similarity=0.151 Sum_probs=57.7
Q ss_pred CCCeEEEEc---CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC---HHHHHHHHhcCCCceEEEec
Q 001559 573 GTSSVLIIG---AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY---LKDAEEVIEGIPNAEAVQLD 646 (1053)
Q Consensus 573 ~~~~VlIiG---aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~---~~~a~~l~~~~~~~~~~~~d 646 (1053)
+.+.++|.| ++++|+++|+.|++.| .+|.+..|+ .+.++++....+....+++|
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G--------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 64 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKACREQG--------------------AELAFTYVVDKLEERVRKMAAELDSELVFRCD 64 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHHCC--------------------CEEEEEcCcHHHHHHHHHHHhccCCceEEECC
Confidence 457899999 4599999999999988 367776654 34455555444445678899
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCcc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
++|.+++.+++. ..|++||+++..
T Consensus 65 v~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~ 95 (261)
T PRK08690 65 VASDDEINQVFADLGKHWDGLDGLVHSIGFA 95 (261)
T ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEECCccC
Confidence 999888776653 479999998753
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.01 Score=65.26 Aligned_cols=70 Identities=14% Similarity=0.247 Sum_probs=56.3
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
++++++|.| +|++|+.+++.|++.| .+|.+.+|+..+. .++..+.+|++|.+
T Consensus 5 ~gk~vlItGas~gIG~~ia~~l~~~G--------------------~~Vi~~~r~~~~~-------~~~~~~~~D~~~~~ 57 (258)
T PRK06398 5 KDKVAIVTGGSQGIGKAVVNRLKEEG--------------------SNVINFDIKEPSY-------NDVDYFKVDVSNKE 57 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--------------------CeEEEEeCCcccc-------CceEEEEccCCCHH
Confidence 457899999 6999999999999987 3788889875432 24678899999988
Q ss_pred HHHHhhc-------cccEEEecCCc
Q 001559 652 SLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 652 ~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++.++++ ..|+|||+++.
T Consensus 58 ~i~~~~~~~~~~~~~id~li~~Ag~ 82 (258)
T PRK06398 58 QVIKGIDYVISKYGRIDILVNNAGI 82 (258)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 8776664 47999999864
|
|
| >cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.03 Score=63.08 Aligned_cols=100 Identities=16% Similarity=0.083 Sum_probs=55.3
Q ss_pred eEEEEcCchhhHHHHHHHHhCCCCCccccccccccc-ccCCCccEEEE-EEC---CHHHHHHHH----hcCCCceE--EE
Q 001559 576 SVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETD-FEWQNDIRVLV-ASL---YLKDAEEVI----EGIPNAEA--VQ 644 (1053)
Q Consensus 576 ~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~-~~~~~~~~v~v-~~r---~~~~a~~l~----~~~~~~~~--~~ 644 (1053)
+|+|+|+|++|..+++.|+..| +. ...+.|+ .++.+++.-.. +.. ...||+.++ +..|.+++ ..
T Consensus 1 kVlVVGaGGlG~eilknLal~G-vg----~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~ 75 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSG-FR----NIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHF 75 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CC----eEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEe
Confidence 5999999999999999999988 31 1122221 13233322111 110 123444333 34565443 33
Q ss_pred ecCCCHHHHHHhhccccEEEecCCcccc-HHHHHHHHHh
Q 001559 645 LDVSDHKSLCKCISQVEIVISLLPASCH-VMVANACIEF 682 (1053)
Q Consensus 645 ~d~~d~~~l~~~i~~~DvVI~~~p~~~~-~~v~~aci~~ 682 (1053)
.++.+. -.+.++++|+||+++...-. ..+.+.|.+.
T Consensus 76 ~~i~~~--~~~f~~~fdvVi~alDn~~aR~~in~~~~~~ 112 (291)
T cd01488 76 GKIQDK--DEEFYRQFNIIICGLDSIEARRWINGTLVSL 112 (291)
T ss_pred cccCch--hHHHhcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 444332 24778899999999865332 3344555554
|
UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.014 Score=64.33 Aligned_cols=78 Identities=15% Similarity=0.235 Sum_probs=57.9
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEE-CCHHHHHHHHhcC-----CCceEEE
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVAS-LYLKDAEEVIEGI-----PNAEAVQ 644 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~-r~~~~a~~l~~~~-----~~~~~~~ 644 (1053)
.+.++++|.| ++++|+++++.|++.| ..|.++. |+.++++++.+.+ .++..+.
T Consensus 6 l~~k~vlItGas~gIG~~ia~~l~~~G--------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (260)
T PRK08416 6 MKGKTLVISGGTRGIGKAIVYEFAQSG--------------------VNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYP 65 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC--------------------CEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEE
Confidence 3467899999 6999999999999987 2666664 5666665554332 2467889
Q ss_pred ecCCCHHHHHHhhc-------cccEEEecCCc
Q 001559 645 LDVSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 645 ~d~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+|++|.+++.+++. ..|++|++++.
T Consensus 66 ~D~~~~~~~~~~~~~~~~~~g~id~lv~nAg~ 97 (260)
T PRK08416 66 LNILEPETYKELFKKIDEDFDRVDFFISNAII 97 (260)
T ss_pred cCCCCHHHHHHHHHHHHHhcCCccEEEECccc
Confidence 99999888776654 36999998853
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.015 Score=64.48 Aligned_cols=76 Identities=18% Similarity=0.299 Sum_probs=57.7
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC----C-ceEEEecCC
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP----N-AEAVQLDVS 648 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~----~-~~~~~~d~~ 648 (1053)
++++|.| +|++|+.+++.|++.| ..|.+++|+.+..+++.+.+. + ...+.+|++
T Consensus 1 k~vlItGas~giG~~la~~la~~G--------------------~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 60 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQG--------------------AELFLTDRDADGLAQTVADARALGGTVPEHRALDIS 60 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCC
Confidence 4689998 7999999999999887 378889999877666654321 2 344679999
Q ss_pred CHHHHHHhhc-------cccEEEecCCcc
Q 001559 649 DHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 649 d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
|.+++.+++. ..|+||++++..
T Consensus 61 ~~~~~~~~~~~~~~~~~~id~lv~~ag~~ 89 (272)
T PRK07832 61 DYDAVAAFAADIHAAHGSMDVVMNIAGIS 89 (272)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 9887765554 369999998653
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.019 Score=63.34 Aligned_cols=77 Identities=13% Similarity=0.241 Sum_probs=58.8
Q ss_pred CCCeEEEEcC---chhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC---HHHHHHHHhcCC--CceEEE
Q 001559 573 GTSSVLIIGA---GRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY---LKDAEEVIEGIP--NAEAVQ 644 (1053)
Q Consensus 573 ~~~~VlIiGa---G~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~---~~~a~~l~~~~~--~~~~~~ 644 (1053)
..+.++|.|+ +++|+++|+.|++.| .+|.+++|+ .++++++.+.++ ++..++
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 65 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAG--------------------AKLVFTYAGERLEKEVRELADTLEGQESLLLP 65 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCC--------------------CEEEEecCcccchHHHHHHHHHcCCCceEEEe
Confidence 4578999996 699999999999988 378887654 456667766553 466788
Q ss_pred ecCCCHHHHHHhhc-------cccEEEecCCc
Q 001559 645 LDVSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 645 ~d~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+|++|.+++.++++ ..|++||+++.
T Consensus 66 ~Dv~d~~~v~~~~~~~~~~~g~ld~lv~nag~ 97 (257)
T PRK08594 66 CDVTSDEEITACFETIKEEVGVIHGVAHCIAF 97 (257)
T ss_pred cCCCCHHHHHHHHHHHHHhCCCccEEEECccc
Confidence 99999887765553 37999999864
|
|
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.01 Score=60.67 Aligned_cols=88 Identities=22% Similarity=0.223 Sum_probs=57.0
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
+.++|.|||+|..|++.+..|.+.| ..|.|..|..++..+.++.- ++++ .+
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG--------------------~~V~Vglr~~s~s~~~A~~~-Gf~v--------~~ 53 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSG--------------------VNVIVGLREGSASWEKAKAD-GFEV--------MS 53 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC---------------------EEEEEE-TTCHHHHHHHHT-T-EC--------CE
T ss_pred CCCEEEEECCChHHHHHHHHHHhCC--------------------CCEEEEecCCCcCHHHHHHC-CCee--------cc
Confidence 5689999999999999999999887 48999988766444444432 2232 34
Q ss_pred HHHhhccccEEEecCCccccHHHHH----HHHHhCCeEEEe
Q 001559 653 LCKCISQVEIVISLLPASCHVMVAN----ACIEFKKHLVTA 689 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~~~~~v~~----aci~~g~~~vD~ 689 (1053)
+.++++++|+|+.++|-..+..+-+ -.++.|+.++-.
T Consensus 54 ~~eAv~~aDvV~~L~PD~~q~~vy~~~I~p~l~~G~~L~fa 94 (165)
T PF07991_consen 54 VAEAVKKADVVMLLLPDEVQPEVYEEEIAPNLKPGATLVFA 94 (165)
T ss_dssp HHHHHHC-SEEEE-S-HHHHHHHHHHHHHHHS-TT-EEEES
T ss_pred HHHHHhhCCEEEEeCChHHHHHHHHHHHHhhCCCCCEEEeC
Confidence 6788899999999999877765543 345666654433
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.015 Score=62.84 Aligned_cols=77 Identities=26% Similarity=0.283 Sum_probs=57.9
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEE-EECCHHHHHHHHhcC----CCceEEEecC
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLV-ASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v-~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
++.++|.| +|++|+.+++.|++.| + +|.+ ..|+.++.+++...+ .++..+.+|+
T Consensus 1 ~~~~lItGa~g~iG~~l~~~l~~~g-~-------------------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 60 (247)
T PRK09730 1 MAIALVTGGSRGIGRATALLLAQEG-Y-------------------TVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADI 60 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC-C-------------------EEEEEeCCChHHHHHHHHHHHhCCCeEEEEEccC
Confidence 35789999 6999999999999887 2 5655 567777666554332 2367789999
Q ss_pred CCHHHHHHhhcc-------ccEEEecCCcc
Q 001559 648 SDHKSLCKCISQ-------VEIVISLLPAS 670 (1053)
Q Consensus 648 ~d~~~l~~~i~~-------~DvVI~~~p~~ 670 (1053)
+|.+++.+++++ .|+||++++..
T Consensus 61 ~d~~~i~~~~~~~~~~~~~id~vi~~ag~~ 90 (247)
T PRK09730 61 SDENQVVAMFTAIDQHDEPLAALVNNAGIL 90 (247)
T ss_pred CCHHHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence 999888877664 47999998753
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.019 Score=62.51 Aligned_cols=73 Identities=25% Similarity=0.199 Sum_probs=56.8
Q ss_pred CeEEEEcC-chhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 575 SSVLIIGA-GRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 575 ~~VlIiGa-G~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
++|+|.|+ |++|+.+++.|++.| .+|.+++|+.++.+.+.+. ++..+.+|++|.+++
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g--------------------~~v~~~~r~~~~~~~~~~~--~~~~~~~D~~~~~~~ 60 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRG--------------------YRVLAACRKPDDVARMNSL--GFTGILLDLDDPESV 60 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC--------------------CEEEEEeCCHHHhHHHHhC--CCeEEEeecCCHHHH
Confidence 57999995 999999999999887 3788999998887765442 467888999988776
Q ss_pred HHhhc--------cccEEEecCCc
Q 001559 654 CKCIS--------QVEIVISLLPA 669 (1053)
Q Consensus 654 ~~~i~--------~~DvVI~~~p~ 669 (1053)
.++++ ..|.+|++.+.
T Consensus 61 ~~~~~~i~~~~~~~~~~ii~~ag~ 84 (256)
T PRK08017 61 ERAADEVIALTDNRLYGLFNNAGF 84 (256)
T ss_pred HHHHHHHHHhcCCCCeEEEECCCC
Confidence 55443 35788888754
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.017 Score=63.39 Aligned_cols=77 Identities=25% Similarity=0.321 Sum_probs=57.1
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEEC-CHHHHHHHHhcC----CCceEEEec
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASL-YLKDAEEVIEGI----PNAEAVQLD 646 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r-~~~~a~~l~~~~----~~~~~~~~d 646 (1053)
..++++|.| +|++|+.+++.|++.| .+|.++.+ +.++.+++...+ .++..+.+|
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g--------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 67 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHG--------------------FDVAVHYNRSRDEAEALAAEIRALGRRAVALQAD 67 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC--------------------CEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcC
Confidence 457899999 7999999999999887 25666544 555555444332 346778899
Q ss_pred CCCHHHHHHhhcc-------ccEEEecCCc
Q 001559 647 VSDHKSLCKCISQ-------VEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~~-------~DvVI~~~p~ 669 (1053)
++|.+++.+++++ .|+||++++.
T Consensus 68 l~d~~~~~~~~~~~~~~~~~iD~vi~~ag~ 97 (258)
T PRK09134 68 LADEAEVRALVARASAALGPITLLVNNASL 97 (258)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCcC
Confidence 9999888776653 6999999864
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.019 Score=65.46 Aligned_cols=77 Identities=19% Similarity=0.285 Sum_probs=60.5
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC----CceEEEecCC
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP----NAEAVQLDVS 648 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~----~~~~~~~d~~ 648 (1053)
++.++|.| ++++|+++++.|++.|. .+|.+++|+.++++++.+.+. ++..+.+|++
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~-------------------~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~ 63 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGE-------------------WHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLG 63 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCC-------------------CEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCC
Confidence 45788888 68999999999998862 378899999988877766542 3567789999
Q ss_pred CHHHHHHhhc-------cccEEEecCCc
Q 001559 649 DHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 649 d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
|.+++.+++. ..|++|++++.
T Consensus 64 ~~~~v~~~~~~~~~~~~~iD~lI~nAG~ 91 (314)
T TIGR01289 64 SLDSVRQFVQQFRESGRPLDALVCNAAV 91 (314)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCc
Confidence 9887765543 47999999874
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.018 Score=63.11 Aligned_cols=77 Identities=19% Similarity=0.257 Sum_probs=57.5
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHH---HHHhcCCCceEEEecCC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAE---EVIEGIPNAEAVQLDVS 648 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~---~l~~~~~~~~~~~~d~~ 648 (1053)
..++++|.| +|++|+.+++.|++.| .+|.+++|+.+..+ ++.....++..+.+|++
T Consensus 5 ~~~~~lItG~s~giG~~la~~l~~~G--------------------~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~ 64 (263)
T PRK08226 5 TGKTALITGALQGIGEGIARVFARHG--------------------ANLILLDISPEIEKLADELCGRGHRCTAVVADVR 64 (263)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC--------------------CEEEEecCCHHHHHHHHHHHHhCCceEEEECCCC
Confidence 357899998 7999999999999987 37899999864221 22221234667889999
Q ss_pred CHHHHHHhhc-------cccEEEecCCc
Q 001559 649 DHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 649 d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
|.+++.+++. ..|+||+++..
T Consensus 65 ~~~~v~~~~~~~~~~~~~id~vi~~ag~ 92 (263)
T PRK08226 65 DPASVAAAIKRAKEKEGRIDILVNNAGV 92 (263)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 9888777655 46999999864
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.017 Score=62.17 Aligned_cols=77 Identities=30% Similarity=0.326 Sum_probs=56.0
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEEC-CHHHHHHHHhc----CCCceEEEec
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASL-YLKDAEEVIEG----IPNAEAVQLD 646 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r-~~~~a~~l~~~----~~~~~~~~~d 646 (1053)
++++|+|+| +|++|+.++..|++.| + +|.+..| +.+..+.+... -+++..+.+|
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~g-~-------------------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 64 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARAG-A-------------------DVVVHYRSDEEAAEELVEAVEALGRRAQAVQAD 64 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-C-------------------eEEEEeCCCHHHHHHHHHHHHhcCCceEEEECC
Confidence 357899999 7999999999999987 2 5555444 44333333322 2347788999
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++|.+++.++++ ..|+||++++.
T Consensus 65 ~~~~~~v~~~~~~~~~~~~~id~vi~~ag~ 94 (249)
T PRK12825 65 VTDKAALEAAVAAAVERFGRIDILVNNAGI 94 (249)
T ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 999988877665 46999999873
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.017 Score=70.27 Aligned_cols=78 Identities=22% Similarity=0.331 Sum_probs=64.1
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC-CceEEEecCCC
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NAEAVQLDVSD 649 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~~~~~~d~~d 649 (1053)
...+.++|.| +|++|+.+++.|++.| .+|.+.+|+.++++++.+.++ ++..+.+|++|
T Consensus 267 ~~~k~~lItGas~gIG~~~a~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~ 326 (520)
T PRK06484 267 ESPRVVAITGGARGIGRAVADRFAAAG--------------------DRLLIIDRDAEGAKKLAEALGDEHLSVQADITD 326 (520)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHhCCceeEEEccCCC
Confidence 3567899998 7999999999999988 379999999998888877654 35668899999
Q ss_pred HHHHHHhhcc-------ccEEEecCCc
Q 001559 650 HKSLCKCISQ-------VEIVISLLPA 669 (1053)
Q Consensus 650 ~~~l~~~i~~-------~DvVI~~~p~ 669 (1053)
.+++.++++. .|++|++++.
T Consensus 327 ~~~~~~~~~~~~~~~g~id~li~nAg~ 353 (520)
T PRK06484 327 EAAVESAFAQIQARWGRLDVLVNNAGI 353 (520)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 9887766643 6999999864
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.014 Score=63.88 Aligned_cols=77 Identities=16% Similarity=0.229 Sum_probs=59.4
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccE-EEEEECCHHHHHHHHhcC----CCceEEEec
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIR-VLVASLYLKDAEEVIEGI----PNAEAVQLD 646 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-v~v~~r~~~~a~~l~~~~----~~~~~~~~d 646 (1053)
+.++|+|.| +|++|+.+++.|++.| . + |.+++|+.++.+++...+ .++..+.+|
T Consensus 5 ~~k~vlItGa~g~iG~~la~~l~~~G-~-------------------~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D 64 (260)
T PRK06198 5 DGKVALVTGGTQGLGAAIARAFAERG-A-------------------AGLVICGRNAEKGEAQAAELEALGAKAVFVQAD 64 (260)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCC-C-------------------CeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 457899999 6999999999999887 2 5 889999877666544332 235668899
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++|.+++.+++. +.|+||+++..
T Consensus 65 ~~~~~~~~~~~~~~~~~~g~id~li~~ag~ 94 (260)
T PRK06198 65 LSDVEDCRRVVAAADEAFGRLDALVNAAGL 94 (260)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 999888776654 47999999864
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.018 Score=63.49 Aligned_cols=77 Identities=17% Similarity=0.294 Sum_probs=59.4
Q ss_pred CCCeEEEEcC---chhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH--HHHHHHHhcCC-CceEEEec
Q 001559 573 GTSSVLIIGA---GRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL--KDAEEVIEGIP-NAEAVQLD 646 (1053)
Q Consensus 573 ~~~~VlIiGa---G~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~--~~a~~l~~~~~-~~~~~~~d 646 (1053)
+.+.++|.|+ +++|+++++.|++.| .+|.+.+|+. +.++++.+.++ ++..+.+|
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G--------------------~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D 65 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQG--------------------AEVVLTGFGRALRLTERIAKRLPEPAPVLELD 65 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCC--------------------CEEEEecCccchhHHHHHHHhcCCCCcEEeCC
Confidence 3578999995 799999999999987 3788888763 44566666554 36688999
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++|.+++.++++ ..|++||+++.
T Consensus 66 v~~~~~i~~~~~~~~~~~g~iD~li~nAG~ 95 (256)
T PRK07889 66 VTNEEHLASLADRVREHVDGLDGVVHSIGF 95 (256)
T ss_pred CCCHHHHHHHHHHHHHHcCCCcEEEEcccc
Confidence 999888766543 47999999875
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.017 Score=63.73 Aligned_cols=77 Identities=10% Similarity=0.128 Sum_probs=57.7
Q ss_pred CCCeEEEEcC---chhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEEC---CHHHHHHHHhcCCCceEEEec
Q 001559 573 GTSSVLIIGA---GRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASL---YLKDAEEVIEGIPNAEAVQLD 646 (1053)
Q Consensus 573 ~~~~VlIiGa---G~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r---~~~~a~~l~~~~~~~~~~~~d 646 (1053)
+.+.++|.|+ +++|+++|+.|++.| .+|.+++| +.++++++.+.++....+.+|
T Consensus 5 ~~k~vlItGas~~~GIG~a~a~~l~~~G--------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 64 (260)
T PRK06997 5 AGKRILITGLLSNRSIAYGIAKACKREG--------------------AELAFTYVGDRFKDRITEFAAEFGSDLVFPCD 64 (260)
T ss_pred CCcEEEEeCCCCCCcHHHHHHHHHHHCC--------------------CeEEEEccchHHHHHHHHHHHhcCCcceeecc
Confidence 3578999993 699999999999987 36777654 455666666655544567899
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++|.+++.++++ ..|++||+++.
T Consensus 65 v~d~~~v~~~~~~~~~~~g~iD~lvnnAG~ 94 (260)
T PRK06997 65 VASDEQIDALFASLGQHWDGLDGLVHSIGF 94 (260)
T ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEEcccc
Confidence 999988876654 47999999875
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.017 Score=62.78 Aligned_cols=76 Identities=22% Similarity=0.232 Sum_probs=56.4
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEE-ECCHHHHHHHHhcC----CCceEEEecC
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVA-SLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~-~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
+++|+|.| +|++|+.+++.|++.| + +|.+. .|+.++++++...+ .++..+.+|+
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g-~-------------------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl 61 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARG-W-------------------SVGINYARDAAAAEETADAVRAAGGRACVVAGDV 61 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCC-C-------------------EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 46799999 6999999999999987 2 56554 56666665554332 2467889999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+|.+++.++++ ..|+||++++.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~id~li~~ag~ 90 (248)
T PRK06947 62 ANEADVIAMFDAVQSAFGRLDALVNNAGI 90 (248)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEECCcc
Confidence 99887766554 47999999864
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.022 Score=63.32 Aligned_cols=94 Identities=11% Similarity=0.085 Sum_probs=70.8
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
+++|.+||+|.||++++.-|.+.+.. ...+|.|.+|+.++++++.+.++.. . . .+.
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~----------------~~~~I~v~~~~~e~~~~l~~~~g~~-~----~---~~~ 56 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGAL----------------PPEEIIVTNRSEEKRAALAAEYGVV-T----T---TDN 56 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCC----------------CcceEEEeCCCHHHHHHHHHHcCCc-c----c---CcH
Confidence 46899999999999999999988732 1248999999999998888888632 1 1 223
Q ss_pred HHhhccccEEEecCCccccHHHHHHH--HHhCCeEEEeec
Q 001559 654 CKCISQVEIVISLLPASCHVMVANAC--IEFKKHLVTASY 691 (1053)
Q Consensus 654 ~~~i~~~DvVI~~~p~~~~~~v~~ac--i~~g~~~vD~sy 691 (1053)
.+...++|+|+-++.+.....+...+ +..++++|.+.-
T Consensus 57 ~~~~~~advv~LavKPq~~~~vl~~l~~~~~~~lvISiaA 96 (266)
T COG0345 57 QEAVEEADVVFLAVKPQDLEEVLSKLKPLTKDKLVISIAA 96 (266)
T ss_pred HHHHhhCCEEEEEeChHhHHHHHHHhhcccCCCEEEEEeC
Confidence 46677899999999776555665554 346788888753
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.015 Score=68.59 Aligned_cols=69 Identities=17% Similarity=0.179 Sum_probs=52.4
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
....++|+|+|+|.+|+.++..+...| .+|.|+++++.+++.... ++ +... +
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~G--------------------a~ViV~d~d~~R~~~A~~-~G-~~~~-----~- 250 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQG--------------------ARVIVTEVDPICALQAAM-EG-YEVM-----T- 250 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--------------------CEEEEEECChhhHHHHHh-cC-CEEc-----c-
Confidence 456889999999999999999998887 378999999888765443 22 3222 1
Q ss_pred HHHHHhhccccEEEecCCc
Q 001559 651 KSLCKCISQVEIVISLLPA 669 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~ 669 (1053)
+.+.++++|+||+|++.
T Consensus 251 --~~e~v~~aDVVI~atG~ 267 (413)
T cd00401 251 --MEEAVKEGDIFVTTTGN 267 (413)
T ss_pred --HHHHHcCCCEEEECCCC
Confidence 23566789999999864
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.017 Score=67.58 Aligned_cols=90 Identities=19% Similarity=0.184 Sum_probs=60.8
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
...++|.|||+|.+|+.+|+.|...| .+|.+.+|+....+ ..... ++.. ..
T Consensus 190 L~gktVGIvG~G~IG~~vA~~l~~fG--------------------~~V~~~dr~~~~~~-~~~~~-g~~~-------~~ 240 (385)
T PRK07574 190 LEGMTVGIVGAGRIGLAVLRRLKPFD--------------------VKLHYTDRHRLPEE-VEQEL-GLTY-------HV 240 (385)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCC--------------------CEEEEECCCCCchh-hHhhc-Ccee-------cC
Confidence 45688999999999999999998876 48999998753222 11121 1111 23
Q ss_pred HHHHhhccccEEEecCCccccH-HH----HHHHHHhCCeEEEee
Q 001559 652 SLCKCISQVEIVISLLPASCHV-MV----ANACIEFKKHLVTAS 690 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~~~~~-~v----~~aci~~g~~~vD~s 690 (1053)
++.++++++|+|+.++|..-.. .+ ..+.++.|.-+|+++
T Consensus 241 ~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 284 (385)
T PRK07574 241 SFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTA 284 (385)
T ss_pred CHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECC
Confidence 5788999999999999965321 11 123355666666665
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.017 Score=63.24 Aligned_cols=74 Identities=18% Similarity=0.324 Sum_probs=57.9
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC-----CceEEEecCC
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-----NAEAVQLDVS 648 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-----~~~~~~~d~~ 648 (1053)
|.++|.| ++++|+++++.|++ | .+|.+++|+.++++++.+.+. .+..+.+|++
T Consensus 1 ~~vlItGas~GIG~aia~~l~~-g--------------------~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~ 59 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLCH-G--------------------EDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQ 59 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHhC-C--------------------CEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccC
Confidence 4688998 68999999999984 6 278999999998887765432 2567899999
Q ss_pred CHHHHHHhhc-------cccEEEecCCc
Q 001559 649 DHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 649 d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
|.+++.+++. ..|++|++++.
T Consensus 60 d~~~v~~~~~~~~~~~g~id~lv~nag~ 87 (246)
T PRK05599 60 DLDTHRELVKQTQELAGEISLAVVAFGI 87 (246)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEecCc
Confidence 9887765543 47999998765
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.025 Score=60.67 Aligned_cols=89 Identities=19% Similarity=0.150 Sum_probs=64.9
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH-HHHHHHhcCCCceEEEecCCCH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK-DAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~-~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
.++++|+|+|+|.+|..-++.|.+.| ..|+|++.+.. ..+++++. .+++.+.-+..
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~g--------------------a~VtVvsp~~~~~l~~l~~~-~~i~~~~~~~~-- 63 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAG--------------------AQLRVIAEELESELTLLAEQ-GGITWLARCFD-- 63 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCC--------------------CEEEEEcCCCCHHHHHHHHc-CCEEEEeCCCC--
Confidence 45689999999999999999999987 37899887653 44555544 25665554442
Q ss_pred HHHHHhhccccEEEecCCcc-ccHHHHHHHHHhCCeE
Q 001559 651 KSLCKCISQVEIVISLLPAS-CHVMVANACIEFKKHL 686 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~-~~~~v~~aci~~g~~~ 686 (1053)
...+.++|+||-+++.. .+..+...|.+.|+.+
T Consensus 64 ---~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~ilv 97 (205)
T TIGR01470 64 ---ADILEGAFLVIAATDDEELNRRVAHAARARGVPV 97 (205)
T ss_pred ---HHHhCCcEEEEECCCCHHHHHHHHHHHHHcCCEE
Confidence 23467899999998875 5667777777777665
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.026 Score=66.38 Aligned_cols=91 Identities=13% Similarity=0.050 Sum_probs=60.9
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
...+++|+|+|+|.+|+.++..+...| .+|.|+++++.++.+.... ++.+. +
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~G--------------------a~ViV~d~dp~r~~~A~~~--G~~v~-----~- 243 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMG--------------------ARVIVTEVDPIRALEAAMD--GFRVM-----T- 243 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCc--------------------CEEEEEeCChhhHHHHHhc--CCEeC-----C-
Confidence 356789999999999999999998776 3899999998876543332 23221 1
Q ss_pred HHHHHhhccccEEEecCCccccH-HHHHHHHHhCCeEEEeec
Q 001559 651 KSLCKCISQVEIVISLLPASCHV-MVANACIEFKKHLVTASY 691 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~~-~v~~aci~~g~~~vD~sy 691 (1053)
+.+.++++|+||++++..-.. .-...+++.|..++.++.
T Consensus 244 --leeal~~aDVVItaTG~~~vI~~~~~~~mK~GailiN~G~ 283 (406)
T TIGR00936 244 --MEEAAKIGDIFITATGNKDVIRGEHFENMKDGAIVANIGH 283 (406)
T ss_pred --HHHHHhcCCEEEECCCCHHHHHHHHHhcCCCCcEEEEECC
Confidence 345678899999998642111 112234556666665553
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.018 Score=72.19 Aligned_cols=79 Identities=22% Similarity=0.262 Sum_probs=64.5
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----CCceEEEec
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLD 646 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d 646 (1053)
.+++.++|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+.+ .++..+.+|
T Consensus 369 ~~~k~vlItGas~giG~~la~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 428 (657)
T PRK07201 369 LVGKVVLITGASSGIGRATAIKVAEAG--------------------ATVFLVARNGEALDELVAEIRAKGGTAHAYTCD 428 (657)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEec
Confidence 3467899999 6999999999999987 38999999998887766543 346778999
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCcc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
++|.+++.++++ ..|+||++++..
T Consensus 429 v~~~~~~~~~~~~~~~~~g~id~li~~Ag~~ 459 (657)
T PRK07201 429 LTDSAAVDHTVKDILAEHGHVDYLVNNAGRS 459 (657)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 999988877766 479999999753
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.031 Score=69.70 Aligned_cols=75 Identities=20% Similarity=0.223 Sum_probs=65.3
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
..+|+|+|+|++|+.+++.|.+.+ ++++++|.|+++++++.+. +..++..|.+|.+.|
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g--------------------~~vvvID~d~~~v~~~~~~--g~~v~~GDat~~~~L 457 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSG--------------------VKMTVLDHDPDHIETLRKF--GMKVFYGDATRMDLL 457 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCC--------------------CCEEEEECCHHHHHHHHhc--CCeEEEEeCCCHHHH
Confidence 468999999999999999999876 4799999999999988653 578899999999988
Q ss_pred H-HhhccccEEEecCCcc
Q 001559 654 C-KCISQVEIVISLLPAS 670 (1053)
Q Consensus 654 ~-~~i~~~DvVI~~~p~~ 670 (1053)
+ .-++++|+||.+++..
T Consensus 458 ~~agi~~A~~vvv~~~d~ 475 (621)
T PRK03562 458 ESAGAAKAEVLINAIDDP 475 (621)
T ss_pred HhcCCCcCCEEEEEeCCH
Confidence 8 5688999999999754
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.0098 Score=67.04 Aligned_cols=77 Identities=16% Similarity=0.145 Sum_probs=60.2
Q ss_pred CCCCCeEEEEcC-chhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCC
Q 001559 571 TKGTSSVLIIGA-GRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSD 649 (1053)
Q Consensus 571 ~~~~~~VlIiGa-G~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d 649 (1053)
..++++|+|||. |.+|++++..|.+.+ ..|+++++..
T Consensus 156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~g--------------------atVtv~~~~t---------------------- 193 (301)
T PRK14194 156 DLTGKHAVVIGRSNIVGKPMAALLLQAH--------------------CSVTVVHSRS---------------------- 193 (301)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCC--------------------CEEEEECCCC----------------------
Confidence 567899999997 599999999999887 3899997642
Q ss_pred HHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeecc
Q 001559 650 HKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYI 692 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~ 692 (1053)
.++.+.++++|+||.+++..- .+-...++.|+.++|++.+
T Consensus 194 -~~l~e~~~~ADIVIsavg~~~--~v~~~~ik~GaiVIDvgin 233 (301)
T PRK14194 194 -TDAKALCRQADIVVAAVGRPR--LIDADWLKPGAVVIDVGIN 233 (301)
T ss_pred -CCHHHHHhcCCEEEEecCChh--cccHhhccCCcEEEEeccc
Confidence 135677889999999998642 2223348899999999854
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.017 Score=72.74 Aligned_cols=79 Identities=30% Similarity=0.419 Sum_probs=63.2
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----C--CceEEE
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----P--NAEAVQ 644 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~--~~~~~~ 644 (1053)
...++|+|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+.+ + ++..+.
T Consensus 412 l~gkvvLVTGasggIG~aiA~~La~~G--------------------a~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~ 471 (676)
T TIGR02632 412 LARRVAFVTGGAGGIGRETARRLAAEG--------------------AHVVLADLNLEAAEAVAAEINGQFGAGRAVALK 471 (676)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhCC--------------------CEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEE
Confidence 3567899999 6999999999999987 38999999988877665432 1 355788
Q ss_pred ecCCCHHHHHHhhc-------cccEEEecCCcc
Q 001559 645 LDVSDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 645 ~d~~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+|++|.+++.++++ +.|+||++++..
T Consensus 472 ~Dvtd~~~v~~a~~~i~~~~g~iDilV~nAG~~ 504 (676)
T TIGR02632 472 MDVTDEQAVKAAFADVALAYGGVDIVVNNAGIA 504 (676)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCcEEEECCCCC
Confidence 99999988877766 579999998753
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.061 Score=61.26 Aligned_cols=73 Identities=25% Similarity=0.265 Sum_probs=52.2
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCce-----EEEecCCC
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAE-----AVQLDVSD 649 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~-----~~~~d~~d 649 (1053)
++|.|||+|++|+.++..|+..+.. .+|.++|++.++++.++..+.+.. ...+-..+
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~------------------~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~ 62 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIA------------------DELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGD 62 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCC------------------CEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCC
Confidence 3799999999999999999987721 379999999998887776542110 01111122
Q ss_pred HHHHHHhhccccEEEecCCc
Q 001559 650 HKSLCKCISQVEIVISLLPA 669 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~ 669 (1053)
. +.++++|+||++++.
T Consensus 63 ~----~~l~~aDIVIitag~ 78 (306)
T cd05291 63 Y----SDCKDADIVVITAGA 78 (306)
T ss_pred H----HHhCCCCEEEEccCC
Confidence 2 336899999999975
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.041 Score=70.66 Aligned_cols=154 Identities=15% Similarity=0.123 Sum_probs=88.2
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccE-EEEEECCHHH-------HHHHHhcCCCceEEE
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIR-VLVASLYLKD-------AEEVIEGIPNAEAVQ 644 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-v~v~~r~~~~-------a~~l~~~~~~~~~~~ 644 (1053)
+..+|.|+|.|.+|+.+++.|.++... ...+ .. +++ +.|++++... ...+...... .
T Consensus 464 ~~~~i~l~G~G~VG~~~~~~l~~~~~~----l~~~-~~------~l~v~~i~~s~~~~~~~~g~~~~~~~~~~~~---~- 528 (819)
T PRK09436 464 QVLDVFVIGVGGVGGALLEQIKRQQPW----LKKK-NI------DLRVCGIANSRKMLLDEHGIDLDNWREELAE---A- 528 (819)
T ss_pred ccccEEEEecCHHHHHHHHHHHHHHHH----HHhc-CC------cEEEEEEEcCCccccCCCCCCHHHHHHHHhh---c-
Confidence 568899999999999999998765310 0001 11 122 3344543210 0111111100 0
Q ss_pred ecCCCHHHHHHhhc----cccEEEecCCccccHHHHHHHHHhCCeEEEeec--cC---hhHHHHHHHHHHcCCeEEecCC
Q 001559 645 LDVSDHKSLCKCIS----QVEIVISLLPASCHVMVANACIEFKKHLVTASY--ID---DSMSKLDEKAKGAGITILGEMG 715 (1053)
Q Consensus 645 ~d~~d~~~l~~~i~----~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy--~~---~~~~~L~~~Ak~~Gv~~l~g~G 715 (1053)
....+.+.+.+.+. ..|+||+|++..........+++.|+|+|+.+= .. ..-.+|.+.|++.|+.+..++-
T Consensus 529 ~~~~~~~~~~~~~~~~~~~~~vvvd~t~~~~~~~~~~~al~~g~~VVtaNK~~~a~~~~~~~el~~~a~~~~~~~~yeat 608 (819)
T PRK09436 529 GEPFDLDRLIRLVKEYHLLNPVIVDCTSSQAVADQYADFLAAGFHVVTPNKKANTSSYAYYHQLREAARKSRRKFLYETN 608 (819)
T ss_pred cCCCCHHHHHHHHhhcCCCCCEEEECCCChHHHHHHHHHHHcCCEEEcCCchhccCCHHHHHHHHHHHHHcCCeEEEeee
Confidence 01113445556665 369999999864333344689999999999862 22 3557888999999999997654
Q ss_pred CChhHHHHHHHHHHHHhhhccCceEEEEe
Q 001559 716 LDPGIDHMMAMKMINHAHVRKGKIKSFTS 744 (1053)
Q Consensus 716 ~dPGi~~mla~~~i~~~~~~~~~v~sf~~ 744 (1053)
+.-|+.-+- .+.++...+++|.+++-
T Consensus 609 V~~giPii~---~l~~~~~~g~~i~~i~G 634 (819)
T PRK09436 609 VGAGLPVIE---TLQNLLNAGDELLKFEG 634 (819)
T ss_pred eccccchHH---HHHHHHhccCcEEEEEE
Confidence 433433221 11222224566777653
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.018 Score=72.61 Aligned_cols=78 Identities=28% Similarity=0.336 Sum_probs=63.9
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC---CceEEEecCC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP---NAEAVQLDVS 648 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~---~~~~~~~d~~ 648 (1053)
.+++|+|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+.+. ++..+.+|++
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~G--------------------a~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvt 480 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEG--------------------ACVVLADLDEEAAEAAAAELGGPDRALGVACDVT 480 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCc--------------------CEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCC
Confidence 457899999 6999999999999887 379999999988877765543 4678889999
Q ss_pred CHHHHHHhhc-------cccEEEecCCcc
Q 001559 649 DHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 649 d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
|.+++.++++ +.|+||++++..
T Consensus 481 d~~~v~~~~~~~~~~~g~iDvvI~~AG~~ 509 (681)
T PRK08324 481 DEAAVQAAFEEAALAFGGVDIVVSNAGIA 509 (681)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 9888776665 579999999753
|
|
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.03 Score=62.43 Aligned_cols=74 Identities=18% Similarity=0.226 Sum_probs=56.2
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
++|||.| ||++|+..+..|.+.| .+|.|.|.-..--.+.+.... +++++.|+.|.+.|
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G--------------------~~vvV~DNL~~g~~~~v~~~~-~~f~~gDi~D~~~L 59 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTG--------------------HEVVVLDNLSNGHKIALLKLQ-FKFYEGDLLDRALL 59 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCC--------------------CeEEEEecCCCCCHHHhhhcc-CceEEeccccHHHH
Confidence 5799997 9999999999999987 378888873222122222111 57889999999999
Q ss_pred HHhhcc--ccEEEecCCc
Q 001559 654 CKCISQ--VEIVISLLPA 669 (1053)
Q Consensus 654 ~~~i~~--~DvVI~~~p~ 669 (1053)
.+.+++ .|.||..+..
T Consensus 60 ~~vf~~~~idaViHFAa~ 77 (329)
T COG1087 60 TAVFEENKIDAVVHFAAS 77 (329)
T ss_pred HHHHHhcCCCEEEECccc
Confidence 999885 7999998854
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.019 Score=69.82 Aligned_cols=77 Identities=25% Similarity=0.401 Sum_probs=62.8
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC-CceEEEecCCCH
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NAEAVQLDVSDH 650 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~~~~~~d~~d~ 650 (1053)
+.+.++|.| ++++|+++++.|++.| .+|.+++|+.++++++.+.+. ++..+.+|++|.
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~ 63 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAG--------------------DQVVVADRNVERARERADSLGPDHHALAMDVSDE 63 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHhCCceeEEEeccCCH
Confidence 457889999 6999999999999988 378999999998888777653 456788999998
Q ss_pred HHHHHhhc-------cccEEEecCCc
Q 001559 651 KSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 651 ~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+++.++++ ..|++||+++.
T Consensus 64 ~~~~~~~~~~~~~~g~iD~li~nag~ 89 (520)
T PRK06484 64 AQIREGFEQLHREFGRIDVLVNNAGV 89 (520)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 88766654 37999999864
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.021 Score=68.35 Aligned_cols=78 Identities=18% Similarity=0.176 Sum_probs=57.2
Q ss_pred CCCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH--------------------H
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK--------------------D 629 (1053)
Q Consensus 571 ~~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~--------------------~ 629 (1053)
..++++|+|.| +|++|+.+++.|++.| .+|.++|+... +
T Consensus 44 ~~~~k~VLVTGatGfIGs~Lv~~L~~~G--------------------~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (442)
T PLN02572 44 SSKKKKVMVIGGDGYCGWATALHLSKRG--------------------YEVAIVDNLCRRLFDHQLGLDSLTPIASIHER 103 (442)
T ss_pred cccCCEEEEECCCcHHHHHHHHHHHHCC--------------------CeEEEEeccccccccccccccccccccchHHH
Confidence 35678999999 7999999999999887 36777764211 1
Q ss_pred HHHHHhc-CCCceEEEecCCCHHHHHHhhcc--ccEEEecCC
Q 001559 630 AEEVIEG-IPNAEAVQLDVSDHKSLCKCISQ--VEIVISLLP 668 (1053)
Q Consensus 630 a~~l~~~-~~~~~~~~~d~~d~~~l~~~i~~--~DvVI~~~p 668 (1053)
.+.+... ..+++.+.+|++|.+.+.+++++ +|+||+++.
T Consensus 104 l~~~~~~~~~~v~~v~~Dl~d~~~v~~~l~~~~~D~ViHlAa 145 (442)
T PLN02572 104 VRRWKEVSGKEIELYVGDICDFEFLSEAFKSFEPDAVVHFGE 145 (442)
T ss_pred HHHHHHhhCCcceEEECCCCCHHHHHHHHHhCCCCEEEECCC
Confidence 1111111 12578889999999999988884 799999883
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.063 Score=61.49 Aligned_cols=137 Identities=13% Similarity=0.045 Sum_probs=78.7
Q ss_pred CCCCCeEEEEcC-chhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHH--HHHhcCCCceEEEecC
Q 001559 571 TKGTSSVLIIGA-GRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAE--EVIEGIPNAEAVQLDV 647 (1053)
Q Consensus 571 ~~~~~~VlIiGa-G~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~--~l~~~~~~~~~~~~d~ 647 (1053)
-.++.||+|+|+ |.+|+.++..|+..+.. .++.++|++..+++ .+....+ .....+.
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~------------------~elvL~Di~~~~g~a~Dl~~~~~--~~~v~~~ 64 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHV------------------SELSLYDIVGAPGVAADLSHIDT--PAKVTGY 64 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCC------------------CEEEEEecCCCcccccchhhcCc--CceEEEe
Confidence 357889999997 99999999999866522 37889998432222 2222222 2233455
Q ss_pred CCHHHHHHhhccccEEEecCCcccc----------------HHHHHHHHHhCCe-EEEeeccChhHHH-HHH--HHHHcC
Q 001559 648 SDHKSLCKCISQVEIVISLLPASCH----------------VMVANACIEFKKH-LVTASYIDDSMSK-LDE--KAKGAG 707 (1053)
Q Consensus 648 ~d~~~l~~~i~~~DvVI~~~p~~~~----------------~~v~~aci~~g~~-~vD~sy~~~~~~~-L~~--~Ak~~G 707 (1053)
+|..+..+.++++|+||.+++.... ..++.+..+++.+ ++-++.+|-+... +.. ..+..|
T Consensus 65 td~~~~~~~l~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~sg 144 (321)
T PTZ00325 65 ADGELWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGV 144 (321)
T ss_pred cCCCchHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhccC
Confidence 5545556788999999999864321 1233444556653 4444444433322 211 123344
Q ss_pred CeE--EecCCCChhHHHHHHHHHHH
Q 001559 708 ITI--LGEMGLDPGIDHMMAMKMIN 730 (1053)
Q Consensus 708 v~~--l~g~G~dPGi~~mla~~~i~ 730 (1053)
..- +.|+| .+|.+-.++.+.
T Consensus 145 ~p~~~viG~g---~LDs~R~r~~la 166 (321)
T PTZ00325 145 YDPRKLFGVT---TLDVVRARKFVA 166 (321)
T ss_pred CChhheeech---hHHHHHHHHHHH
Confidence 322 33344 488777776553
|
|
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.03 Score=62.99 Aligned_cols=75 Identities=21% Similarity=0.273 Sum_probs=54.4
Q ss_pred eEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHH-HHHHHh--cCCCceEEEecCCCHH
Q 001559 576 SVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKD-AEEVIE--GIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 576 ~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~-a~~l~~--~~~~~~~~~~d~~d~~ 651 (1053)
+|+|+| +|++|+.+++.|.+.+ .+|.+.+|...+ .+.+.. ..++++.+.+|+++.+
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g--------------------~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 60 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESG--------------------HEVVVLDNLSNGSPEALKRGERITRVTFVEGDLRDRE 60 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCC--------------------CeEEEEeCCCccchhhhhhhccccceEEEECCCCCHH
Confidence 589998 7999999999999887 267777653222 222111 1124667889999999
Q ss_pred HHHHhhc--cccEEEecCCcc
Q 001559 652 SLCKCIS--QVEIVISLLPAS 670 (1053)
Q Consensus 652 ~l~~~i~--~~DvVI~~~p~~ 670 (1053)
++.++++ +.|+||++++..
T Consensus 61 ~~~~~~~~~~~d~vv~~ag~~ 81 (328)
T TIGR01179 61 LLDRLFEEHKIDAVIHFAGLI 81 (328)
T ss_pred HHHHHHHhCCCcEEEECcccc
Confidence 9988886 689999999753
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.047 Score=66.12 Aligned_cols=98 Identities=22% Similarity=0.199 Sum_probs=67.6
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH-
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH- 650 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~- 650 (1053)
....+|+|+|+|.+|..++..+...| ..|.++|++.++.+...+ ++ ++.+.+|..+.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG--------------------A~V~a~D~~~~rle~aes-lG-A~~v~i~~~e~~ 220 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLG--------------------AIVRAFDTRPEVAEQVES-MG-AEFLELDFEEEG 220 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHH-cC-CeEEEecccccc
Confidence 34789999999999999999988887 279999999988775444 43 44443433210
Q ss_pred ------------H-------HHHHhhccccEEEecCCccc--cH----HHHHHHHHhCCeEEEeec
Q 001559 651 ------------K-------SLCKCISQVEIVISLLPASC--HV----MVANACIEFKKHLVTASY 691 (1053)
Q Consensus 651 ------------~-------~l~~~i~~~DvVI~~~p~~~--~~----~v~~aci~~g~~~vD~sy 691 (1053)
+ .+.+.++++|+||+|+...- .+ .-+-.+++.|..++|++.
T Consensus 221 ~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 221 GSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred ccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 1 12233467999999996422 22 233456788889999985
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.03 Score=60.47 Aligned_cols=77 Identities=22% Similarity=0.308 Sum_probs=57.1
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEEC-CHHHHHHHHhcC----CCceEEEec
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASL-YLKDAEEVIEGI----PNAEAVQLD 646 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r-~~~~a~~l~~~~----~~~~~~~~d 646 (1053)
+.++++|.| +|++|+.+++.|++.| .++.++.| +..+++++.+.+ .++..+.+|
T Consensus 4 ~~~~vlItG~~~~iG~~la~~l~~~g--------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 63 (245)
T PRK12937 4 SNKVAIVTGASRGIGAAIARRLAADG--------------------FAVAVNYAGSAAAADELVAEIEAAGGRAIAVQAD 63 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC--------------------CEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECC
Confidence 457899999 7999999999999987 25666555 344444444332 246778899
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++|.+++.++++ ..|+||++++.
T Consensus 64 l~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 93 (245)
T PRK12937 64 VADAAAVTRLFDAAETAFGRIDVLVNNAGV 93 (245)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 999988877766 57999999864
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.017 Score=64.73 Aligned_cols=78 Identities=13% Similarity=0.243 Sum_probs=61.0
Q ss_pred CCCCCeEEEEcCch-hhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCC
Q 001559 571 TKGTSSVLIIGAGR-VCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSD 649 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~-vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d 649 (1053)
+.++++|+|+|.|. +|++++..|...+ ..|+++.+..
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~g--------------------atVtv~~s~t---------------------- 192 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKN--------------------ASVTILHSRS---------------------- 192 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCC--------------------CeEEEEeCCc----------------------
Confidence 56789999999877 9999999998876 3788887631
Q ss_pred HHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeeccC
Q 001559 650 HKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYID 693 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~ 693 (1053)
.+|.+.++++|+||+++|..- .+...-++.|+.++|++..+
T Consensus 193 -~~l~~~~~~ADIVIsAvg~p~--~i~~~~vk~gavVIDvGi~~ 233 (286)
T PRK14175 193 -KDMASYLKDADVIVSAVGKPG--LVTKDVVKEGAVIIDVGNTP 233 (286)
T ss_pred -hhHHHHHhhCCEEEECCCCCc--ccCHHHcCCCcEEEEcCCCc
Confidence 246778899999999997642 12334578899999998654
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.016 Score=67.04 Aligned_cols=86 Identities=16% Similarity=0.201 Sum_probs=58.4
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceE----E--Ee
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEA----V--QL 645 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~----~--~~ 645 (1053)
+++++|.|||+|.+|.+++..|++.+ .+.++.|+.+.++++.+...+... . ..
T Consensus 5 ~~~mkI~IiGaGa~G~alA~~La~~g---------------------~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~ 63 (341)
T PRK12439 5 KREPKVVVLGGGSWGTTVASICARRG---------------------PTLQWVRSAETADDINDNHRNSRYLGNDVVLSD 63 (341)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCC---------------------CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCC
Confidence 45789999999999999999999876 356677998888877654211110 0 00
Q ss_pred cCCCHHHHHHhhccccEEEecCCccccHHHHHH
Q 001559 646 DVSDHKSLCKCISQVEIVISLLPASCHVMVANA 678 (1053)
Q Consensus 646 d~~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~a 678 (1053)
.+.-..++.+.++++|+||-++|......+.+.
T Consensus 64 ~i~~t~d~~~a~~~aDlVilavps~~~~~vl~~ 96 (341)
T PRK12439 64 TLRATTDFAEAANCADVVVMGVPSHGFRGVLTE 96 (341)
T ss_pred CeEEECCHHHHHhcCCEEEEEeCHHHHHHHHHH
Confidence 111113455667899999999997655444433
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.018 Score=66.66 Aligned_cols=93 Identities=18% Similarity=0.162 Sum_probs=61.6
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEE-ECCHHHHHHHHhcCCC---------ceEE
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVA-SLYLKDAEEVIEGIPN---------AEAV 643 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~-~r~~~~a~~l~~~~~~---------~~~~ 643 (1053)
+||+|+| .|++|+.+++.|.+++.+ ++..+ ++..+..+.+.+.++. ....
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~-------------------~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 61 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYF-------------------ELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDL 61 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCc-------------------eEEEEEEChhhcCCcchhhccccccCCCcccccee
Confidence 4799999 599999999999887632 44433 5443332333222221 1111
Q ss_pred EecCCCHHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEee
Q 001559 644 QLDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 644 ~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~s 690 (1053)
.+.-.+.+ ...++|+|+.|+|...+..+..++.++|++++|.|
T Consensus 62 ~~~~~~~~----~~~~~DvVf~a~p~~~s~~~~~~~~~~G~~VIDls 104 (341)
T TIGR00978 62 PIVEPEPV----ASKDVDIVFSALPSEVAEEVEPKLAEAGKPVFSNA 104 (341)
T ss_pred EEEeCCHH----HhccCCEEEEeCCHHHHHHHHHHHHHCCCEEEECC
Confidence 11111222 34689999999999998888888899999999997
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.025 Score=61.96 Aligned_cols=78 Identities=12% Similarity=0.079 Sum_probs=56.4
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH--HHHHHHhcCCCceEEEecCC
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK--DAEEVIEGIPNAEAVQLDVS 648 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~--~a~~l~~~~~~~~~~~~d~~ 648 (1053)
.+++.++|.| +|++|+++++.|++.| .+|.+.+++.. ..+++.+.-.++..+++|++
T Consensus 8 l~~k~~lItG~~~gIG~a~a~~l~~~G--------------------~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 67 (253)
T PRK08993 8 LEGKVAVVTGCDTGLGQGMALGLAEAG--------------------CDIVGINIVEPTETIEQVTALGRRFLSLTADLR 67 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC--------------------CEEEEecCcchHHHHHHHHhcCCeEEEEECCCC
Confidence 3457899999 7999999999999987 36776666432 22333222224667889999
Q ss_pred CHHHHHHhhc-------cccEEEecCCc
Q 001559 649 DHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 649 d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
|.+++.++++ ..|++|++++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~D~li~~Ag~ 95 (253)
T PRK08993 68 KIDGIPALLERAVAEFGHIDILVNNAGL 95 (253)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 9888877665 47999999864
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.018 Score=64.58 Aligned_cols=77 Identities=22% Similarity=0.337 Sum_probs=57.9
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH---------HHHHHHHhcC----C
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL---------KDAEEVIEGI----P 638 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~---------~~a~~l~~~~----~ 638 (1053)
+.+.++|.| ++++|+.+++.|++.| .+|.+++|+. ++++++.+.+ .
T Consensus 5 ~~k~~lITGas~GIG~aia~~la~~G--------------------~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 64 (286)
T PRK07791 5 DGRVVIVTGAGGGIGRAHALAFAAEG--------------------ARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGG 64 (286)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--------------------CEEEEeeCCccccccccchhHHHHHHHHHHhcCC
Confidence 357899998 7999999999999987 3788887765 5555555433 2
Q ss_pred CceEEEecCCCHHHHHHhhc-------cccEEEecCCc
Q 001559 639 NAEAVQLDVSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 639 ~~~~~~~d~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++..+.+|++|.+++.++++ ..|++||+++.
T Consensus 65 ~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAG~ 102 (286)
T PRK07791 65 EAVANGDDIADWDGAANLVDAAVETFGGLDVLVNNAGI 102 (286)
T ss_pred ceEEEeCCCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 35678899999887765543 46999999865
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.031 Score=61.71 Aligned_cols=77 Identities=18% Similarity=0.214 Sum_probs=55.4
Q ss_pred CCCeEEEEcCc---hhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH---HHHHHHHhcCCCceEEEec
Q 001559 573 GTSSVLIIGAG---RVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL---KDAEEVIEGIPNAEAVQLD 646 (1053)
Q Consensus 573 ~~~~VlIiGaG---~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~---~~a~~l~~~~~~~~~~~~d 646 (1053)
+.+.++|.|++ ++|+++|+.|++.| .+|.+.+|+. +.++++.+..+....+++|
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G--------------------~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~D 66 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHG--------------------AELWFTYQSEVLEKRVKPLAEEIGCNFVSELD 66 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcC--------------------CEEEEEeCchHHHHHHHHHHHhcCCceEEEcc
Confidence 45778899964 79999999999987 3788888873 2344444443333356899
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++|.+++.++++ ..|++||+++.
T Consensus 67 v~~~~~v~~~~~~~~~~~g~iDilVnnag~ 96 (260)
T PRK06603 67 VTNPKSISNLFDDIKEKWGSFDFLLHGMAF 96 (260)
T ss_pred CCCHHHHHHHHHHHHHHcCCccEEEEcccc
Confidence 999888776654 37999998754
|
|
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.024 Score=63.10 Aligned_cols=57 Identities=25% Similarity=0.389 Sum_probs=47.9
Q ss_pred eEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHH
Q 001559 576 SVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 576 ~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
+|+|+| +|++|+.+++.|.+.| .+|.+++|. ..|+.|.+.+.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g--------------------~~v~~~~r~-----------------~~d~~~~~~~~ 43 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEG--------------------RVVVALTSS-----------------QLDLTDPEALE 43 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcC--------------------CEEEEeCCc-----------------ccCCCCHHHHH
Confidence 589999 6999999999999887 378888874 35788889999
Q ss_pred Hhhccc--cEEEecCCc
Q 001559 655 KCISQV--EIVISLLPA 669 (1053)
Q Consensus 655 ~~i~~~--DvVI~~~p~ 669 (1053)
+.++++ |+||++++.
T Consensus 44 ~~~~~~~~d~vi~~a~~ 60 (287)
T TIGR01214 44 RLLRAIRPDAVVNTAAY 60 (287)
T ss_pred HHHHhCCCCEEEECCcc
Confidence 888876 999999864
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.024 Score=66.41 Aligned_cols=91 Identities=19% Similarity=0.177 Sum_probs=60.8
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
....++|.|||+|.+|+.+++.|...| .+|.+++|+....+. .... ++.. .
T Consensus 196 ~L~gktVGIVG~G~IG~~vA~~L~afG--------------------~~V~~~d~~~~~~~~-~~~~-g~~~-------~ 246 (386)
T PLN03139 196 DLEGKTVGTVGAGRIGRLLLQRLKPFN--------------------CNLLYHDRLKMDPEL-EKET-GAKF-------E 246 (386)
T ss_pred CCCCCEEEEEeecHHHHHHHHHHHHCC--------------------CEEEEECCCCcchhh-Hhhc-Ccee-------c
Confidence 356789999999999999999998876 478889987533222 1111 1111 1
Q ss_pred HHHHHhhccccEEEecCCccccH-H-H---HHHHHHhCCeEEEee
Q 001559 651 KSLCKCISQVEIVISLLPASCHV-M-V---ANACIEFKKHLVTAS 690 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~~-~-v---~~aci~~g~~~vD~s 690 (1053)
+++.++++++|+|+.++|..-.. . + ..+.++.|..+|+++
T Consensus 247 ~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 291 (386)
T PLN03139 247 EDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNA 291 (386)
T ss_pred CCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECC
Confidence 35788999999999999964321 1 1 223445666666665
|
|
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.013 Score=65.96 Aligned_cols=58 Identities=26% Similarity=0.378 Sum_probs=43.6
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
|||+|+| .|.+|++++++|.+.+ ..+...+|. .+|++|.+.+
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~--------------------~~v~~~~r~-----------------~~dl~d~~~~ 43 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERG--------------------YEVIATSRS-----------------DLDLTDPEAV 43 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTS--------------------EEEEEESTT-----------------CS-TTSHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHhhCC--------------------CEEEEeCch-----------------hcCCCCHHHH
Confidence 6899999 6999999999998765 366666665 3678899999
Q ss_pred HHhhcc--ccEEEecCCc
Q 001559 654 CKCISQ--VEIVISLLPA 669 (1053)
Q Consensus 654 ~~~i~~--~DvVI~~~p~ 669 (1053)
.+.+++ .|+||||+..
T Consensus 44 ~~~~~~~~pd~Vin~aa~ 61 (286)
T PF04321_consen 44 AKLLEAFKPDVVINCAAY 61 (286)
T ss_dssp HHHHHHH--SEEEE----
T ss_pred HHHHHHhCCCeEecccee
Confidence 988875 7999999864
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.015 Score=60.37 Aligned_cols=98 Identities=20% Similarity=0.165 Sum_probs=64.5
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEec----
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLD---- 646 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d---- 646 (1053)
..+..+|+|+|+|.+|..+++.|...| .++++.+.++++.+++-.... ..+..+
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~lG--------------------a~v~~~d~~~~~~~~~~~~~~--~~i~~~~~~~ 74 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGLG--------------------AEVVVPDERPERLRQLESLGA--YFIEVDYEDH 74 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHTT---------------------EEEEEESSHHHHHHHHHTTT--EESEETTTTT
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHCC--------------------CEEEeccCCHHHHHhhhcccC--ceEEEccccc
Confidence 456789999999999999999999987 489999999988877655433 223232
Q ss_pred ---------------CCCHHHHHHhhccccEEEecC--CccccH----HHHHHHHHhCCeEEEee
Q 001559 647 ---------------VSDHKSLCKCISQVEIVISLL--PASCHV----MVANACIEFKKHLVTAS 690 (1053)
Q Consensus 647 ---------------~~d~~~l~~~i~~~DvVI~~~--p~~~~~----~v~~aci~~g~~~vD~s 690 (1053)
......+.+.++.+|+||.+. |..-.+ .-....++.|..++|+|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 75 LERKDFDKADYYEHPESYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp TTSB-CCHHHCHHHCCHHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred ccccccchhhhhHHHHHhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 113356788889999999654 221112 12233466777788876
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.023 Score=67.30 Aligned_cols=68 Identities=18% Similarity=0.203 Sum_probs=52.2
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
...++|+|+|+|.+|+.++..|...| .+|.++++++.++.+.... ++++.
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~G--------------------a~ViV~d~dp~ra~~A~~~--G~~v~-------- 259 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLG--------------------ARVIVTEVDPICALQAAMD--GFRVM-------- 259 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCC--------------------CEEEEEcCCchhhHHHHhc--CCEec--------
Confidence 46789999999999999999998887 3899999998876554332 22221
Q ss_pred HHHHhhccccEEEecCCc
Q 001559 652 SLCKCISQVEIVISLLPA 669 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~ 669 (1053)
.+.++++++|+||++++.
T Consensus 260 ~l~eal~~aDVVI~aTG~ 277 (425)
T PRK05476 260 TMEEAAELGDIFVTATGN 277 (425)
T ss_pred CHHHHHhCCCEEEECCCC
Confidence 245667799999999864
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.022 Score=64.62 Aligned_cols=79 Identities=25% Similarity=0.311 Sum_probs=59.4
Q ss_pred CCCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC-HHHHHHHHhcC----CCceEEE
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY-LKDAEEVIEGI----PNAEAVQ 644 (1053)
Q Consensus 571 ~~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~-~~~a~~l~~~~----~~~~~~~ 644 (1053)
..+.+.++|.| +|++|+.+++.|++.| .+|.+.+++ .++++++++.+ .++..+.
T Consensus 9 ~l~~k~~lVTGas~gIG~~ia~~L~~~G--------------------a~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~ 68 (306)
T PRK07792 9 DLSGKVAVVTGAAAGLGRAEALGLARLG--------------------ATVVVNDVASALDASDVLDEIRAAGAKAVAVA 68 (306)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCC--------------------CEEEEecCCchhHHHHHHHHHHhcCCeEEEEe
Confidence 34568899999 6999999999999987 378888774 34454444332 2466788
Q ss_pred ecCCCHHHHHHhhc------cccEEEecCCc
Q 001559 645 LDVSDHKSLCKCIS------QVEIVISLLPA 669 (1053)
Q Consensus 645 ~d~~d~~~l~~~i~------~~DvVI~~~p~ 669 (1053)
+|++|.+++.++++ ..|+||++++.
T Consensus 69 ~Dv~d~~~~~~~~~~~~~~g~iD~li~nAG~ 99 (306)
T PRK07792 69 GDISQRATADELVATAVGLGGLDIVVNNAGI 99 (306)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 99999888777664 47999999865
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.036 Score=69.52 Aligned_cols=112 Identities=14% Similarity=0.063 Sum_probs=70.8
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
.++++|.|||+|.+|..++..|.+.| .+|.+++|+..+ +.+..+. +.. ..+
T Consensus 50 ~~~~kIgIIG~G~mG~slA~~L~~~G--------------------~~V~~~dr~~~~--~~A~~~G-v~~----~~d-- 100 (667)
T PLN02712 50 TTQLKIAIIGFGNYGQFLAKTLISQG--------------------HTVLAHSRSDHS--LAARSLG-VSF----FLD-- 100 (667)
T ss_pred CCCCEEEEEccCHHHHHHHHHHHHCC--------------------CEEEEEeCCHHH--HHHHHcC-CEE----eCC--
Confidence 45679999999999999999999886 378999998543 2233332 221 222
Q ss_pred HHHHhh-ccccEEEecCCccccHHHHHH----HHHhCCeEEEeeccChhHHHHHHHHHHcCCeEEec
Q 001559 652 SLCKCI-SQVEIVISLLPASCHVMVANA----CIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGE 713 (1053)
Q Consensus 652 ~l~~~i-~~~DvVI~~~p~~~~~~v~~a----ci~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~l~g 713 (1053)
+.+++ .++|+||-|+|......++.. .++.|+.++|++-......+..+.....|..++..
T Consensus 101 -~~e~~~~~aDvViLavP~~~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~ 166 (667)
T PLN02712 101 -PHDLCERHPDVILLCTSIISTENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICS 166 (667)
T ss_pred -HHHHhhcCCCEEEEcCCHHHHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEee
Confidence 33433 469999999998654444433 24567889999765433322222333335555543
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.021 Score=61.92 Aligned_cols=77 Identities=21% Similarity=0.309 Sum_probs=58.2
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEE-ECCHHHHHHHHhcC----CCceEEEec
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVA-SLYLKDAEEVIEGI----PNAEAVQLD 646 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~-~r~~~~a~~l~~~~----~~~~~~~~d 646 (1053)
+.+.++|.| +|++|+.+++.|+++| . .|.+. .|+.++.+++.+.+ .++..+.+|
T Consensus 5 ~~~~~lItG~s~~iG~~la~~l~~~g-~-------------------~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D 64 (247)
T PRK12935 5 NGKVAIVTGGAKGIGKAITVALAQEG-A-------------------KVVINYNSSKEAAENLVNELGKEGHDVYAVQAD 64 (247)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcC-C-------------------EEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECC
Confidence 457899999 7999999999999887 2 55554 45556555554332 246778999
Q ss_pred CCCHHHHHHhhcc-------ccEEEecCCc
Q 001559 647 VSDHKSLCKCISQ-------VEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~~-------~DvVI~~~p~ 669 (1053)
++|.+++.+++++ .|+||++++.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 94 (247)
T PRK12935 65 VSKVEDANRLVEEAVNHFGKVDILVNNAGI 94 (247)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 9999888877765 6999999865
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.022 Score=63.78 Aligned_cols=73 Identities=25% Similarity=0.279 Sum_probs=58.5
Q ss_pred eEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHH
Q 001559 576 SVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 576 ~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
+|+|.| +|++|+.+++.|.+.| .+|..++|......... .+++.+.+|.+|.+...
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g--------------------~~V~~~~r~~~~~~~~~---~~~~~~~~d~~~~~~~~ 58 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAG--------------------HDVRGLDRLRDGLDPLL---SGVEFVVLDLTDRDLVD 58 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCC--------------------CeEEEEeCCCccccccc---cccceeeecccchHHHH
Confidence 499999 6999999999999886 38999999766544333 45677888988887788
Q ss_pred Hhhccc-cEEEecCCccc
Q 001559 655 KCISQV-EIVISLLPASC 671 (1053)
Q Consensus 655 ~~i~~~-DvVI~~~p~~~ 671 (1053)
+.++.+ |+||+++....
T Consensus 59 ~~~~~~~d~vih~aa~~~ 76 (314)
T COG0451 59 ELAKGVPDAVIHLAAQSS 76 (314)
T ss_pred HHHhcCCCEEEEccccCc
Confidence 888888 99999986543
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.018 Score=62.55 Aligned_cols=74 Identities=20% Similarity=0.274 Sum_probs=56.4
Q ss_pred eEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC-HHHHHHHHhcCC------CceEEEecC
Q 001559 576 SVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY-LKDAEEVIEGIP------NAEAVQLDV 647 (1053)
Q Consensus 576 ~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~-~~~a~~l~~~~~------~~~~~~~d~ 647 (1053)
+|+|.| +|++|+.+++.|++.| .+|.+++|+ .++++++.+.+. .+..+.+|+
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 60 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQG--------------------AKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDV 60 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCC--------------------CEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeec
Confidence 378998 7999999999999887 378999998 666666654432 123467899
Q ss_pred CCHHHHHHhhc-------cccEEEecCCc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+|.+++.++++ ..|+||++++.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 89 (251)
T PRK07069 61 TDEAQWQALLAQAADAMGGLSVLVNNAGV 89 (251)
T ss_pred CCHHHHHHHHHHHHHHcCCccEEEECCCc
Confidence 99888776654 46999999864
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.041 Score=58.93 Aligned_cols=86 Identities=20% Similarity=0.220 Sum_probs=57.5
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH-HHHHHHhcCCCceEEEecCCCH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK-DAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~-~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
.+.++|+|+|+|.+|...++.|.+.| .+|+|++++.. .+.+++.. ..+....-.. .
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~g--------------------a~V~VIs~~~~~~l~~l~~~-~~i~~~~~~~-~- 64 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYG--------------------AHIVVISPELTENLVKLVEE-GKIRWKQKEF-E- 64 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC--------------------CeEEEEcCCCCHHHHHHHhC-CCEEEEecCC-C-
Confidence 46789999999999999999999987 27899988653 33444433 2233322111 1
Q ss_pred HHHHHhhccccEEEecCCcc-ccHHHHHHHHHhCC
Q 001559 651 KSLCKCISQVEIVISLLPAS-CHVMVANACIEFKK 684 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~-~~~~v~~aci~~g~ 684 (1053)
.+.+.++|+||.||+.. .+..+...| +.+.
T Consensus 65 ---~~~l~~adlViaaT~d~elN~~i~~~a-~~~~ 95 (202)
T PRK06718 65 ---PSDIVDAFLVIAATNDPRVNEQVKEDL-PENA 95 (202)
T ss_pred ---hhhcCCceEEEEcCCCHHHHHHHHHHH-HhCC
Confidence 24567899999999754 345556666 4454
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.025 Score=62.13 Aligned_cols=78 Identities=22% Similarity=0.224 Sum_probs=57.7
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC-HHHHHHHHhcC----CCceEEEe
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY-LKDAEEVIEGI----PNAEAVQL 645 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~-~~~a~~l~~~~----~~~~~~~~ 645 (1053)
.+.++++|.| +|++|+.+++.|++.| ..|.+..|+ .+.++++.+.+ .++..+.+
T Consensus 5 ~~~k~~lItGa~~gIG~~ia~~l~~~G--------------------~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 64 (261)
T PRK08936 5 LEGKVVVITGGSTGLGRAMAVRFGKEK--------------------AKVVINYRSDEEEANDVAEEIKKAGGEAIAVKG 64 (261)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC--------------------CEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEe
Confidence 4568899999 7999999999999987 267777774 44444444322 23567889
Q ss_pred cCCCHHHHHHhhc-------cccEEEecCCc
Q 001559 646 DVSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 646 d~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
|++|.+++.++++ ..|++|++++.
T Consensus 65 Dl~~~~~i~~~~~~~~~~~g~id~lv~~ag~ 95 (261)
T PRK08936 65 DVTVESDVVNLIQTAVKEFGTLDVMINNAGI 95 (261)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 9999988776664 36999999864
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.021 Score=62.00 Aligned_cols=74 Identities=19% Similarity=0.211 Sum_probs=54.9
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC-CCceEEEecCCCHH
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI-PNAEAVQLDVSDHK 651 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~-~~~~~~~~d~~d~~ 651 (1053)
+++++|.| +|++|+.+++.|++.| .+|.+++|+.++. +.... .++..+.+|++|.+
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~G--------------------~~v~~~~r~~~~~--~~~~~~~~~~~~~~D~~~~~ 58 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQPG--------------------IAVLGVARSRHPS--LAAAAGERLAEVELDLSDAA 58 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhCC--------------------CEEEEEecCcchh--hhhccCCeEEEEEeccCCHH
Confidence 46899999 6999999999999887 3788888875532 22222 24677899999988
Q ss_pred HHHHhhc-----------cccEEEecCCc
Q 001559 652 SLCKCIS-----------QVEIVISLLPA 669 (1053)
Q Consensus 652 ~l~~~i~-----------~~DvVI~~~p~ 669 (1053)
++.+++. ..|++|++++.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~v~~ag~ 87 (243)
T PRK07023 59 AAAAWLAGDLLAAFVDGASRVLLINNAGT 87 (243)
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEcCcc
Confidence 8776432 35789988764
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.05 Score=65.24 Aligned_cols=114 Identities=15% Similarity=0.183 Sum_probs=81.0
Q ss_pred hhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC-CceEEEecCCCHHHHHHhhccccEE
Q 001559 585 VCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NAEAVQLDVSDHKSLCKCISQVEIV 663 (1053)
Q Consensus 585 vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~~~~~~d~~d~~~l~~~i~~~DvV 663 (1053)
||+++|..|++.| .+|.|.||+.++++++.+... ...+... .+.+++.+.++.+|+|
T Consensus 1 MG~~mA~nL~~~G--------------------~~V~v~nrt~~~~~~l~~~~g~~~g~~~~--~s~~e~v~~l~~~~~I 58 (459)
T PRK09287 1 MGKNLALNIASHG--------------------YTVAVYNRTPEKTDEFLAEEGKGKKIVPA--YTLEEFVASLEKPRKI 58 (459)
T ss_pred CcHHHHHHHHhCC--------------------CeEEEECCCHHHHHHHHHhhCCCCCeEee--CCHHHHHhhCCCCCEE
Confidence 6899999999988 389999999999999987422 1112222 2455555555569999
Q ss_pred EecCCcccc-HHHH---HHHHHhCCeEEEeec-cChhHHHHHHHHHHcCCeEEecCCCChhHH
Q 001559 664 ISLLPASCH-VMVA---NACIEFKKHLVTASY-IDDSMSKLDEKAKGAGITILGEMGLDPGID 721 (1053)
Q Consensus 664 I~~~p~~~~-~~v~---~aci~~g~~~vD~sy-~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~ 721 (1053)
|.++|.+-. ..+. ...++.|..+||.+- .+.++..+.+.++++|+.++. +|+.-|..
T Consensus 59 i~mv~~g~~v~~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvd-apVSGG~~ 120 (459)
T PRK09287 59 LLMVKAGAPVDAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIG-MGVSGGEE 120 (459)
T ss_pred EEECCCchHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEe-cCCCCCHH
Confidence 999998743 2232 234577899999984 456777888899999998664 77655544
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.026 Score=61.38 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=56.7
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
+.++++|.| +|++|+.+++.|++.| .+|.+.+|+. . ...-.++..+.+|++|.+
T Consensus 7 ~~k~vlItGas~~iG~~la~~l~~~G--------------------~~v~~~~~~~--~---~~~~~~~~~~~~D~~~~~ 61 (252)
T PRK08220 7 SGKTVWVTGAAQGIGYAVALAFVEAG--------------------AKVIGFDQAF--L---TQEDYPFATFVLDVSDAA 61 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC--------------------CEEEEEecch--h---hhcCCceEEEEecCCCHH
Confidence 457899999 6999999999999987 3788888876 1 112234778899999998
Q ss_pred HHHHhhcc-------ccEEEecCCc
Q 001559 652 SLCKCISQ-------VEIVISLLPA 669 (1053)
Q Consensus 652 ~l~~~i~~-------~DvVI~~~p~ 669 (1053)
++.+++++ .|+||+++..
T Consensus 62 ~~~~~~~~~~~~~~~id~vi~~ag~ 86 (252)
T PRK08220 62 AVAQVCQRLLAETGPLDVLVNAAGI 86 (252)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCc
Confidence 88877654 6999999864
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.022 Score=64.51 Aligned_cols=77 Identities=19% Similarity=0.186 Sum_probs=57.9
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccE-EEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIR-VLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
.||.|+| +|++|..+++.|+.++.+ + +.+.++.. + +..+
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~-------------------el~~l~s~~~---------~--------~~~~--- 42 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDI-------------------ELLSIAPDRR---------K--------DAAE--- 42 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCe-------------------EEEEEecccc---------c--------CcCC---
Confidence 4799999 799999999999999743 3 33443321 1 1112
Q ss_pred HHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEee
Q 001559 653 LCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~s 690 (1053)
..++++++|+|+-|+|.......+..+.+.|+.+||+|
T Consensus 43 ~~~~~~~~D~vFlalp~~~s~~~~~~~~~~g~~VIDlS 80 (310)
T TIGR01851 43 RAKLLNAADVAILCLPDDAAREAVSLVDNPNTCIIDAS 80 (310)
T ss_pred HhHhhcCCCEEEECCCHHHHHHHHHHHHhCCCEEEECC
Confidence 23566789999999999887777777788999999998
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.022 Score=61.14 Aligned_cols=72 Identities=18% Similarity=0.270 Sum_probs=58.9
Q ss_pred EEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC---CCceEEEecCCCHHHH
Q 001559 578 LIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI---PNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 578 lIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~---~~~~~~~~d~~d~~~l 653 (1053)
+|.| +|++|+.+++.|++.| .+|.+++|+.++++.+...+ .++..+.+|++|.+++
T Consensus 1 lItGas~~iG~~~a~~l~~~G--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~ 60 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEG--------------------ARVTIASRSRDRLAAAARALGGGAPVRTAALDITDEAAV 60 (230)
T ss_pred CeecCCChHHHHHHHHHHHCC--------------------CEEEEEeCCHHHHHHHHHHHhcCCceEEEEccCCCHHHH
Confidence 4677 7999999999999987 37899999988877766543 3467888999999998
Q ss_pred HHhhcc---ccEEEecCCc
Q 001559 654 CKCISQ---VEIVISLLPA 669 (1053)
Q Consensus 654 ~~~i~~---~DvVI~~~p~ 669 (1053)
.++++. .|++|++++.
T Consensus 61 ~~~~~~~~~id~li~~ag~ 79 (230)
T PRK07041 61 DAFFAEAGPFDHVVITAAD 79 (230)
T ss_pred HHHHHhcCCCCEEEECCCC
Confidence 887765 6999999865
|
|
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.045 Score=60.75 Aligned_cols=92 Identities=20% Similarity=0.213 Sum_probs=68.7
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHH
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
|+|+|+| +|. |+.+++.|.+.| .+|.+.-++....+.+.. .+ ...+..+..|.+++
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g--------------------~~v~~s~~t~~~~~~~~~-~g-~~~v~~g~l~~~~l 57 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQG--------------------IEILVTVTTSEGKHLYPI-HQ-ALTVHTGALDPQEL 57 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCC--------------------CeEEEEEccCCccccccc-cC-CceEEECCCCHHHH
Confidence 5799998 488 999999999887 367777777655444333 22 23345666688889
Q ss_pred HHhhcc--ccEEEecCCcc---ccHHHHHHHHHhCCeEEEe
Q 001559 654 CKCISQ--VEIVISLLPAS---CHVMVANACIEFKKHLVTA 689 (1053)
Q Consensus 654 ~~~i~~--~DvVI~~~p~~---~~~~v~~aci~~g~~~vD~ 689 (1053)
.+.+++ .|+||+++-++ ++..+..+|-+.|.+|+-.
T Consensus 58 ~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 58 REFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred HHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 888875 89999999443 3467789999999999887
|
This enzyme was found to be a monomer by gel filtration. |
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.025 Score=61.38 Aligned_cols=77 Identities=13% Similarity=0.135 Sum_probs=55.4
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEE-EECCHHHHHHHHhcC----CCceEEEecC
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLV-ASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v-~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
.+.++|.| +|++|+.+++.|++.| . +|.+ .+++..+.++..+.+ .++..+.+|+
T Consensus 3 ~k~~lVtG~s~giG~~~a~~l~~~G-~-------------------~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 62 (246)
T PRK12938 3 QRIAYVTGGMGGIGTSICQRLHKDG-F-------------------KVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNV 62 (246)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcC-C-------------------EEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCC
Confidence 46789999 7999999999999988 2 5555 445555544443322 2355678999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCcc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+|.+++.++++ ..|+||++++..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~id~li~~ag~~ 92 (246)
T PRK12938 63 GDWDSTKAAFDKVKAEVGEIDVLVNNAGIT 92 (246)
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 99988876664 479999998653
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.025 Score=60.94 Aligned_cols=76 Identities=20% Similarity=0.219 Sum_probs=56.5
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEEC-CHHHHHHHHhcC----CCceEEEecCC
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASL-YLKDAEEVIEGI----PNAEAVQLDVS 648 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r-~~~~a~~l~~~~----~~~~~~~~d~~ 648 (1053)
+.++|.| +|++|+.+++.|++.| .+|.+..| +.++++++.... .++..+.+|++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G--------------------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 60 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDG--------------------YRVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVS 60 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC--------------------CEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCC
Confidence 4688998 7999999999999887 26777776 666655544322 24678899999
Q ss_pred CHHHHHHhhc-------cccEEEecCCcc
Q 001559 649 DHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 649 d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
|.+++.++++ ..|+||++++..
T Consensus 61 ~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 89 (242)
T TIGR01829 61 SFESCKAAVAKVEAELGPIDVLVNNAGIT 89 (242)
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEECCCCC
Confidence 9887765554 479999998653
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.043 Score=69.11 Aligned_cols=79 Identities=16% Similarity=0.242 Sum_probs=57.9
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH--HHHHHHHh--cCCCceEEEecC
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL--KDAEEVIE--GIPNAEAVQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~--~~a~~l~~--~~~~~~~~~~d~ 647 (1053)
+.++|+|.| +|++|+.+++.|.+.+. +.+|.+.+|.. ++...+.. ..++++.+.+|+
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~------------------~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl 66 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNYP------------------DYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDI 66 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCC------------------CCEEEEEeCCCccchhhhhhhcccCCCeEEEECCC
Confidence 468999999 79999999999998741 24777788742 22333322 134678889999
Q ss_pred CCHHHHHHhh--ccccEEEecCCc
Q 001559 648 SDHKSLCKCI--SQVEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i--~~~DvVI~~~p~ 669 (1053)
+|.+.+.+.+ .++|+||+++..
T Consensus 67 ~d~~~~~~~~~~~~~D~ViHlAa~ 90 (668)
T PLN02260 67 ASADLVNYLLITEGIDTIMHFAAQ 90 (668)
T ss_pred CChHHHHHHHhhcCCCEEEECCCc
Confidence 9988877665 579999999864
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.031 Score=60.41 Aligned_cols=77 Identities=18% Similarity=0.307 Sum_probs=56.6
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC-----CCceEEEec
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI-----PNAEAVQLD 646 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~-----~~~~~~~~d 646 (1053)
+.++++|.| +|++|+.+++.|++.| .+|.+.+|+.++++++.+.+ +.+..+.+|
T Consensus 5 ~~k~vlItG~sggiG~~la~~l~~~g--------------------~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D 64 (239)
T PRK08703 5 SDKTILVTGASQGLGEQVAKAYAAAG--------------------ATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFD 64 (239)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcC--------------------CEEEEEeCChHHHHHHHHHHHHcCCCCcceEEee
Confidence 457899999 6999999999999887 37999999998877665442 235567788
Q ss_pred CCC--HHHHHHhh--------ccccEEEecCCc
Q 001559 647 VSD--HKSLCKCI--------SQVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d--~~~l~~~i--------~~~DvVI~~~p~ 669 (1053)
+++ .+++.+++ ...|+||++++.
T Consensus 65 ~~~~~~~~~~~~~~~i~~~~~~~id~vi~~ag~ 97 (239)
T PRK08703 65 LMSAEEKEFEQFAATIAEATQGKLDGIVHCAGY 97 (239)
T ss_pred ecccchHHHHHHHHHHHHHhCCCCCEEEEeccc
Confidence 864 23333322 356999999864
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.023 Score=62.25 Aligned_cols=73 Identities=18% Similarity=0.207 Sum_probs=56.3
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
.+.++|+|.| +|++|+.+++.|++.| .+|.+++|+.+.. .-.++..+.+|++|.
T Consensus 7 ~~~k~vlItGas~gIG~~ia~~l~~~G--------------------~~v~~~~r~~~~~-----~~~~~~~~~~D~~~~ 61 (260)
T PRK06523 7 LAGKRALVTGGTKGIGAATVARLLEAG--------------------ARVVTTARSRPDD-----LPEGVEFVAADLTTA 61 (260)
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHCC--------------------CEEEEEeCChhhh-----cCCceeEEecCCCCH
Confidence 3468899999 6999999999999987 3789999986532 112467889999998
Q ss_pred HHHHHhhc-------cccEEEecCCc
Q 001559 651 KSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 651 ~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+++.++++ ..|+||++++.
T Consensus 62 ~~~~~~~~~~~~~~~~id~vi~~ag~ 87 (260)
T PRK06523 62 EGCAAVARAVLERLGGVDILVHVLGG 87 (260)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 87765443 46999999864
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.017 Score=58.19 Aligned_cols=78 Identities=21% Similarity=0.224 Sum_probs=61.4
Q ss_pred CCCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCC
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSD 649 (1053)
Q Consensus 571 ~~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d 649 (1053)
+.++++|+|+| ..-+|++++..|.+.+ ..|++++++-
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~g--------------------atV~~~~~~t---------------------- 62 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDG--------------------ATVYSCDWKT---------------------- 62 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCC--------------------CEEEEeCCCC----------------------
Confidence 56789999999 7899999999998876 3788887531
Q ss_pred HHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeeccC
Q 001559 650 HKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYID 693 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~~ 693 (1053)
.++.+.++++|+||.+++.. ..+-...++.|++++|.....
T Consensus 63 -~~l~~~v~~ADIVvsAtg~~--~~i~~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 63 -IQLQSKVHDADVVVVGSPKP--EKVPTEWIKPGATVINCSPTK 103 (140)
T ss_pred -cCHHHHHhhCCEEEEecCCC--CccCHHHcCCCCEEEEcCCCc
Confidence 23567889999999999865 235566799999999987543
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.027 Score=60.87 Aligned_cols=77 Identities=27% Similarity=0.380 Sum_probs=56.9
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEEC----CHHHHHHHHhcC----CCceEE
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASL----YLKDAEEVIEGI----PNAEAV 643 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r----~~~~a~~l~~~~----~~~~~~ 643 (1053)
++++++|.| +|++|+.+++.|+++| .+|.+++| +.+..+++.+.+ .++..+
T Consensus 5 ~~~~ilItGasg~iG~~la~~l~~~g--------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (249)
T PRK12827 5 DSRRVLITGGSGGLGRAIAVRLAADG--------------------ADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGL 64 (249)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC--------------------CeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEE
Confidence 357899999 7999999999999987 26666544 444444444332 246788
Q ss_pred EecCCCHHHHHHhhc-------cccEEEecCCc
Q 001559 644 QLDVSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 644 ~~d~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
.+|++|.+++.++++ +.|+||++++.
T Consensus 65 ~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 97 (249)
T PRK12827 65 AFDVRDFAATRAALDAGVEEFGRLDILVNNAGI 97 (249)
T ss_pred EccCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 999999988876653 57999999865
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.033 Score=66.46 Aligned_cols=92 Identities=15% Similarity=0.157 Sum_probs=63.0
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
....++|+|+|+|.+|+.+|..|...| .+|.++++++.++.+.... +++.
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~G--------------------a~ViV~e~dp~~a~~A~~~--G~~~-------- 300 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFG--------------------ARVVVTEIDPICALQAAME--GYQV-------- 300 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCC--------------------CEEEEEeCCchhHHHHHhc--Ccee--------
Confidence 456789999999999999999998877 3899999987776433221 2322
Q ss_pred HHHHHhhccccEEEecCCcc-ccHHHHHHHHHhCCeEEEeecc
Q 001559 651 KSLCKCISQVEIVISLLPAS-CHVMVANACIEFKKHLVTASYI 692 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~-~~~~v~~aci~~g~~~vD~sy~ 692 (1053)
..+.++++++|+||.+++.. +-..-...+++.|..+++++-.
T Consensus 301 ~~leell~~ADIVI~atGt~~iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 301 VTLEDVVETADIFVTATGNKDIITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred ccHHHHHhcCCEEEECCCcccccCHHHHhccCCCcEEEEcCCC
Confidence 13567788999999997531 1111122345667777776644
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.021 Score=64.85 Aligned_cols=71 Identities=24% Similarity=0.251 Sum_probs=52.9
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
..+.++|.|||.|.+|+++|+.|...| .+|.+.+|.. +..+.+... +++.
T Consensus 13 ~LkgKtVGIIG~GsIG~amA~nL~d~G--------------------~~ViV~~r~~-~s~~~A~~~-G~~v-------- 62 (335)
T PRK13403 13 LLQGKTVAVIGYGSQGHAQAQNLRDSG--------------------VEVVVGVRPG-KSFEVAKAD-GFEV-------- 62 (335)
T ss_pred hhCcCEEEEEeEcHHHHHHHHHHHHCc--------------------CEEEEEECcc-hhhHHHHHc-CCEE--------
Confidence 467899999999999999999999887 4888888763 333333322 2221
Q ss_pred HHHHHhhccccEEEecCCccc
Q 001559 651 KSLCKCISQVEIVISLLPASC 671 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~ 671 (1053)
.++.++++++|+|+.++|...
T Consensus 63 ~sl~Eaak~ADVV~llLPd~~ 83 (335)
T PRK13403 63 MSVSEAVRTAQVVQMLLPDEQ 83 (335)
T ss_pred CCHHHHHhcCCEEEEeCCChH
Confidence 247788999999999999643
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.015 Score=65.63 Aligned_cols=76 Identities=18% Similarity=0.220 Sum_probs=59.9
Q ss_pred CCCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEE-CCHHHHHHHHhcCCCceEEEecCC
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVAS-LYLKDAEEVIEGIPNAEAVQLDVS 648 (1053)
Q Consensus 571 ~~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~-r~~~~a~~l~~~~~~~~~~~~d~~ 648 (1053)
..++++|+|+| .|.+|+++|..|.+.+ ..|++++ |+.
T Consensus 155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g--------------------~tVtv~~~rT~--------------------- 193 (296)
T PRK14188 155 DLSGLNAVVIGRSNLVGKPMAQLLLAAN--------------------ATVTIAHSRTR--------------------- 193 (296)
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHhCC--------------------CEEEEECCCCC---------------------
Confidence 45689999999 9999999999999887 3899994 542
Q ss_pred CHHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeecc
Q 001559 649 DHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYI 692 (1053)
Q Consensus 649 d~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy~ 692 (1053)
++.+.++++|+||.+++..- .+....++.|++++|++.+
T Consensus 194 ---~l~e~~~~ADIVIsavg~~~--~v~~~~lk~GavVIDvGin 232 (296)
T PRK14188 194 ---DLPAVCRRADILVAAVGRPE--MVKGDWIKPGATVIDVGIN 232 (296)
T ss_pred ---CHHHHHhcCCEEEEecCChh--hcchheecCCCEEEEcCCc
Confidence 24667789999999998642 2333448899999999864
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.023 Score=64.60 Aligned_cols=79 Identities=20% Similarity=0.194 Sum_probs=57.9
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHH
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
+.+|.|+| +|++|..+++.|.+++. .++.-...+... +..+
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~-------------------~~l~~~~s~~~~----------------~~~~--- 43 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSD-------------------IELLSIPEAKRK----------------DAAA--- 43 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCC-------------------eEEEEEecCCCC----------------cccC---
Confidence 57899999 79999999999999873 244333322111 0011
Q ss_pred HHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEee
Q 001559 653 LCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~s 690 (1053)
..+..+++|+|+.|+|......++..+.+.|+.+||.|
T Consensus 44 ~~~~~~~~DvvFlalp~~~s~~~~~~~~~~g~~VIDlS 81 (313)
T PRK11863 44 RRELLNAADVAILCLPDDAAREAVALIDNPATRVIDAS 81 (313)
T ss_pred chhhhcCCCEEEECCCHHHHHHHHHHHHhCCCEEEECC
Confidence 12345689999999999888888888889999999998
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.039 Score=59.40 Aligned_cols=77 Identities=29% Similarity=0.312 Sum_probs=56.0
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH-HHHHHHhc----CCCceEEEec
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK-DAEEVIEG----IPNAEAVQLD 646 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~-~a~~l~~~----~~~~~~~~~d 646 (1053)
+.++++|.| +|++|+.+++.|++.| .+|.+..|+.. ..+.+... -.++..+.+|
T Consensus 4 ~~~~vlItG~sg~iG~~l~~~l~~~G--------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 63 (248)
T PRK05557 4 EGKVALVTGASRGIGRAIAERLAAQG--------------------ANVVINYASSEAGAEALVAEIGALGGKALAVQGD 63 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--------------------CEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcC
Confidence 357899999 7999999999999887 26767666543 33333322 2246677889
Q ss_pred CCCHHHHHHhhc-------cccEEEecCCc
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++|.+++.++++ ..|+||++++.
T Consensus 64 l~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 93 (248)
T PRK05557 64 VSDAESVERAVDEAKAEFGGVDILVNNAGI 93 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 999888776654 47999999864
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.046 Score=65.08 Aligned_cols=100 Identities=19% Similarity=0.199 Sum_probs=65.7
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCc-e--------EE
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNA-E--------AV 643 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~-~--------~~ 643 (1053)
..++|.|||.|++|.++|..|++ + + +|.++|++.++.+++......+ + ..
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~-~-~-------------------~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g 63 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGK-S-R-------------------QVVGFDVNKKRILELKNGVDVNLETTEEELREAR 63 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhc-C-C-------------------EEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhC
Confidence 35889999999999999999877 4 3 8999999999999987443210 0 00
Q ss_pred EecCCCHHHHHHhhccccEEEecCCccccH-------HHH------HHHHHhCCeEEEeeccChhH
Q 001559 644 QLDVSDHKSLCKCISQVEIVISLLPASCHV-------MVA------NACIEFKKHLVTASYIDDSM 696 (1053)
Q Consensus 644 ~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~-------~v~------~aci~~g~~~vD~sy~~~~~ 696 (1053)
.+-.++. .+.++++|++|.|+|...+. .+. ...++.|..+|+.|.+++.+
T Consensus 64 ~l~~t~~---~~~~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgt 126 (425)
T PRK15182 64 YLKFTSE---IEKIKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGC 126 (425)
T ss_pred CeeEEeC---HHHHcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcc
Confidence 0001111 23578999999999865321 111 12335677778877665543
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.032 Score=66.78 Aligned_cols=72 Identities=25% Similarity=0.336 Sum_probs=49.9
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH-HHHHHHhc--CCCceEEEecC
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK-DAEEVIEG--IPNAEAVQLDV 647 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~-~a~~l~~~--~~~~~~~~~d~ 647 (1053)
.+.|||+|.| +|++|+.+++.|.+.| .+|.+++|... +.+.+... .++++.+..|+
T Consensus 117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G--------------------~~V~~ld~~~~~~~~~~~~~~~~~~~~~i~~D~ 176 (442)
T PLN02206 117 RKGLRVVVTGGAGFVGSHLVDRLMARG--------------------DSVIVVDNFFTGRKENVMHHFSNPNFELIRHDV 176 (442)
T ss_pred cCCCEEEEECcccHHHHHHHHHHHHCc--------------------CEEEEEeCCCccchhhhhhhccCCceEEEECCc
Confidence 4568999999 7999999999999987 26777776422 12222222 23466666676
Q ss_pred CCHHHHHHhhccccEEEecCC
Q 001559 648 SDHKSLCKCISQVEIVISLLP 668 (1053)
Q Consensus 648 ~d~~~l~~~i~~~DvVI~~~p 668 (1053)
.+. .+.++|+||+++.
T Consensus 177 ~~~-----~l~~~D~ViHlAa 192 (442)
T PLN02206 177 VEP-----ILLEVDQIYHLAC 192 (442)
T ss_pred cCh-----hhcCCCEEEEeee
Confidence 543 3457999999985
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.027 Score=68.57 Aligned_cols=96 Identities=20% Similarity=0.258 Sum_probs=62.9
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----------CCc---
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----------PNA--- 640 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----------~~~--- 640 (1053)
.++|.|||+|.||..+|..|+..| ..|++.|++.+.+++..+.+ ...
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG--------------------~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~ 66 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAG--------------------HTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAE 66 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--------------------CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 468999999999999999999887 48999999999887642111 100
Q ss_pred -------eEEEecCCCHHHHHHhhccccEEEecCCccccH--HH---HHHHHHhCCeE-EEeeccChh
Q 001559 641 -------EAVQLDVSDHKSLCKCISQVEIVISLLPASCHV--MV---ANACIEFKKHL-VTASYIDDS 695 (1053)
Q Consensus 641 -------~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~--~v---~~aci~~g~~~-vD~sy~~~~ 695 (1053)
..... .++.+ ++++|+||.++|-.... .+ .......++.+ .+.|..+..
T Consensus 67 ~~~~~~~~i~~~-----~~~~~-~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~ 128 (507)
T PRK08268 67 QADAALARLRPV-----EALAD-LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSIT 128 (507)
T ss_pred HHHHHHhCeEEe-----CCHHH-hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH
Confidence 01111 12333 56999999999876542 22 22233455665 367776654
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.036 Score=62.56 Aligned_cols=75 Identities=20% Similarity=0.270 Sum_probs=51.2
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----------CCceE-
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----------PNAEA- 642 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----------~~~~~- 642 (1053)
.++|.|||+|.+|..+|..|+..| .+|.++|++.+++++..+.+ ..+..
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G--------------------~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~ 63 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAG--------------------YDVLLNDVSADRLEAGLATINGNLARQVAKGKISEE 63 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC--------------------CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 468999999999999999999887 38999999988776643211 00000
Q ss_pred ------EEecCCCHHHHHHhhccccEEEecCCccc
Q 001559 643 ------VQLDVSDHKSLCKCISQVEIVISLLPASC 671 (1053)
Q Consensus 643 ------~~~d~~d~~~l~~~i~~~DvVI~~~p~~~ 671 (1053)
..+..+ .++ +.++++|+||.|+|-..
T Consensus 64 ~~~~~~~~i~~~--~~~-~~~~~aD~Vieavpe~~ 95 (292)
T PRK07530 64 ARAAALARISTA--TDL-EDLADCDLVIEAATEDE 95 (292)
T ss_pred HHHHHHhCeEee--CCH-HHhcCCCEEEEcCcCCH
Confidence 000111 123 24689999999998653
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.025 Score=64.26 Aligned_cols=76 Identities=21% Similarity=0.184 Sum_probs=56.3
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH----------HHHHHHHhc---C
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL----------KDAEEVIEG---I 637 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~----------~~a~~l~~~---~ 637 (1053)
.+.+.++|.| ++++|+++++.|++.| .+|.+++|+. ++++++.+. .
T Consensus 6 l~~k~~lITGgs~GIG~aia~~la~~G--------------------~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~ 65 (305)
T PRK08303 6 LRGKVALVAGATRGAGRGIAVELGAAG--------------------ATVYVTGRSTRARRSEYDRPETIEETAELVTAA 65 (305)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC--------------------CEEEEEecccccccccccccchHHHHHHHHHhc
Confidence 3457899999 6899999999999987 3788889873 344443332 2
Q ss_pred C-CceEEEecCCCHHHHHHhhc-------cccEEEecC
Q 001559 638 P-NAEAVQLDVSDHKSLCKCIS-------QVEIVISLL 667 (1053)
Q Consensus 638 ~-~~~~~~~d~~d~~~l~~~i~-------~~DvVI~~~ 667 (1053)
+ ++.++++|++|.+++.++++ ..|++||++
T Consensus 66 ~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 66 GGRGIAVQVDHLVPEQVRALVERIDREQGRLDILVNDI 103 (305)
T ss_pred CCceEEEEcCCCCHHHHHHHHHHHHHHcCCccEEEECC
Confidence 2 35678899999888776654 369999987
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.026 Score=64.42 Aligned_cols=75 Identities=20% Similarity=0.281 Sum_probs=54.2
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHH---HHhcC--CCceEEEecCC
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEE---VIEGI--PNAEAVQLDVS 648 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~---l~~~~--~~~~~~~~d~~ 648 (1053)
|+|+|+| +|++|+.+++.|++.| .+|.+++|....... ..... .++..+.+|++
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g--------------------~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 60 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNG--------------------HDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCC--------------------CeEEEEecCCCchHhHHHHHHHhcCCCceEEEccCC
Confidence 5799999 6999999999999887 367777754221111 11112 23567789999
Q ss_pred CHHHHHHhhc--cccEEEecCCc
Q 001559 649 DHKSLCKCIS--QVEIVISLLPA 669 (1053)
Q Consensus 649 d~~~l~~~i~--~~DvVI~~~p~ 669 (1053)
|.+.+.++++ ++|+||++++.
T Consensus 61 d~~~~~~~~~~~~~d~vvh~a~~ 83 (338)
T PRK10675 61 NEALLTEILHDHAIDTVIHFAGL 83 (338)
T ss_pred CHHHHHHHHhcCCCCEEEECCcc
Confidence 9988888776 58999999854
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.031 Score=61.22 Aligned_cols=76 Identities=21% Similarity=0.278 Sum_probs=56.7
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEE-CCHHHHHHHHhcC----CCceEEEecC
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVAS-LYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~-r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
+++|+|.| +|++|+.+++.|++.| .+|.++. ++.++++++.+.+ .++..+.+|+
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G--------------------~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl 61 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQG--------------------FDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDL 61 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC--------------------CEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccC
Confidence 46799999 6999999999999987 2676664 5666655554432 2467888999
Q ss_pred CCHHHHHHhhc-------cccEEEecCCc
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+|.+++.+++. ..|+||++++.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~id~li~~ag~ 90 (256)
T PRK12743 62 SDLPEGAQALDKLIQRLGRIDVLVNNAGA 90 (256)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 99887766554 47999999865
|
|
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.034 Score=66.46 Aligned_cols=73 Identities=22% Similarity=0.342 Sum_probs=50.3
Q ss_pred CCCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH-HHHHHHh--cCCCceEEEec
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK-DAEEVIE--GIPNAEAVQLD 646 (1053)
Q Consensus 571 ~~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~-~a~~l~~--~~~~~~~~~~d 646 (1053)
..+.+||+|.| +|++|+.+++.|.+.| .+|.+++|... +.+.+.. ..++++.+..|
T Consensus 117 ~~~~mkILVTGatGFIGs~Lv~~Ll~~G--------------------~~V~~ldr~~~~~~~~~~~~~~~~~~~~~~~D 176 (436)
T PLN02166 117 GRKRLRIVVTGGAGFVGSHLVDKLIGRG--------------------DEVIVIDNFFTGRKENLVHLFGNPRFELIRHD 176 (436)
T ss_pred ccCCCEEEEECCccHHHHHHHHHHHHCC--------------------CEEEEEeCCCCccHhHhhhhccCCceEEEECc
Confidence 35568999999 7999999999999887 37888887522 1122211 12345666666
Q ss_pred CCCHHHHHHhhccccEEEecCC
Q 001559 647 VSDHKSLCKCISQVEIVISLLP 668 (1053)
Q Consensus 647 ~~d~~~l~~~i~~~DvVI~~~p 668 (1053)
+.+ ..+.++|+||+++.
T Consensus 177 i~~-----~~~~~~D~ViHlAa 193 (436)
T PLN02166 177 VVE-----PILLEVDQIYHLAC 193 (436)
T ss_pred ccc-----ccccCCCEEEECce
Confidence 643 33568999999985
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.036 Score=59.79 Aligned_cols=76 Identities=20% Similarity=0.257 Sum_probs=56.6
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH-HHHHHHhcC----CCceEEEecCC
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK-DAEEVIEGI----PNAEAVQLDVS 648 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~-~a~~l~~~~----~~~~~~~~d~~ 648 (1053)
++++|.| +|++|+.+++.|++.| .+|.+.+|+.. .++++.... .++..+.+|++
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g--------------------~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 62 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDG--------------------YRVIATYFSGNDCAKDWFEEYGFTEDQVRLKELDVT 62 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcC--------------------CEEEEEeCCcHHHHHHHHHHhhccCCeEEEEEcCCC
Confidence 5788998 7999999999999887 37888888743 333333322 23678899999
Q ss_pred CHHHHHHhhc-------cccEEEecCCcc
Q 001559 649 DHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 649 d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
|.+++.++++ ..|+||++++..
T Consensus 63 ~~~~v~~~~~~~~~~~~~id~vi~~ag~~ 91 (245)
T PRK12824 63 DTEECAEALAEIEEEEGPVDILVNNAGIT 91 (245)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 9888776654 379999998653
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.034 Score=62.56 Aligned_cols=78 Identities=22% Similarity=0.241 Sum_probs=57.7
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH-HHHHHHhcC----CCceEEEe
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK-DAEEVIEGI----PNAEAVQL 645 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~-~a~~l~~~~----~~~~~~~~ 645 (1053)
.+.++++|.| +|++|+.+++.|++.| .+|.+++|+.+ ..+++.+.+ .++.++.+
T Consensus 44 ~~~k~iLItGasggIG~~la~~l~~~G--------------------~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (290)
T PRK06701 44 LKGKVALITGGDSGIGRAVAVLFAKEG--------------------ADIAIVYLDEHEDANETKQRVEKEGVKCLLIPG 103 (290)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC--------------------CEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEc
Confidence 3467899999 6999999999999987 37888888743 233332221 23667889
Q ss_pred cCCCHHHHHHhhc-------cccEEEecCCc
Q 001559 646 DVSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 646 d~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
|++|.+.+.++++ ..|+||++++.
T Consensus 104 Dl~~~~~~~~~~~~i~~~~~~iD~lI~~Ag~ 134 (290)
T PRK06701 104 DVSDEAFCKDAVEETVRELGRLDILVNNAAF 134 (290)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 9999888877664 46999999865
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.037 Score=60.01 Aligned_cols=75 Identities=23% Similarity=0.260 Sum_probs=55.3
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEE-CCHHHHHHHHhcC----CCceEEEecCC
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVAS-LYLKDAEEVIEGI----PNAEAVQLDVS 648 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~-r~~~~a~~l~~~~----~~~~~~~~d~~ 648 (1053)
+.++|.| +|++|+.+++.|++.| . .|.+.. |+.++.+.+.+.+ .++..+.+|++
T Consensus 3 ~~~lVtG~~~~iG~~~a~~l~~~G-~-------------------~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~ 62 (248)
T PRK06123 3 KVMIITGASRGIGAATALLAAERG-Y-------------------AVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVA 62 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC-C-------------------eEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccC
Confidence 4688998 6999999999999987 2 555554 5555555443322 23567889999
Q ss_pred CHHHHHHhhc-------cccEEEecCCc
Q 001559 649 DHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 649 d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
|.+++.+++. ..|+||++++.
T Consensus 63 ~~~~~~~~~~~~~~~~~~id~li~~ag~ 90 (248)
T PRK06123 63 DEADVLRLFEAVDRELGRLDALVNNAGI 90 (248)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 9988887765 46999999865
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.033 Score=60.65 Aligned_cols=75 Identities=12% Similarity=0.100 Sum_probs=55.0
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH-HHHHHHHhc----CCCceEEEecCC
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL-KDAEEVIEG----IPNAEAVQLDVS 648 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~-~~a~~l~~~----~~~~~~~~~d~~ 648 (1053)
+.|+|.| +|++|+.+++.|++.| .+|.+++|+. +..++..+. -.++.++.+|++
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g--------------------~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 62 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAG--------------------FDLAINDRPDDEELAATQQELRALGVEVIFFPADVA 62 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCC--------------------CEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCC
Confidence 5688888 7999999999999987 3678888753 333333222 124678899999
Q ss_pred CHHHHHHhhc-------cccEEEecCCc
Q 001559 649 DHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 649 d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
|.+++.+++. ..|+||++++.
T Consensus 63 ~~~~~~~~~~~~~~~~~~id~vi~~ag~ 90 (256)
T PRK12745 63 DLSAHEAMLDAAQAAWGRIDCLVNNAGV 90 (256)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCcc
Confidence 9888766554 46999999864
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.017 Score=63.48 Aligned_cols=72 Identities=15% Similarity=0.193 Sum_probs=57.1
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
+.+.++|.| +|++|+.+++.|++.| .+|.+.+|+.++.+ ..++..+.+|++|.+
T Consensus 8 ~~k~vlItG~s~gIG~~la~~l~~~G--------------------~~v~~~~~~~~~~~-----~~~~~~~~~D~~~~~ 62 (266)
T PRK06171 8 QGKIIIVTGGSSGIGLAIVKELLANG--------------------ANVVNADIHGGDGQ-----HENYQFVPTDVSSAE 62 (266)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC--------------------CEEEEEeCCccccc-----cCceEEEEccCCCHH
Confidence 457899999 7999999999999987 37888888765432 124677889999998
Q ss_pred HHHHhhc-------cccEEEecCCc
Q 001559 652 SLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 652 ~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++.++++ ..|+||++++.
T Consensus 63 ~~~~~~~~~~~~~g~id~li~~Ag~ 87 (266)
T PRK06171 63 EVNHTVAEIIEKFGRIDGLVNNAGI 87 (266)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCcc
Confidence 8877665 36999999864
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.038 Score=62.30 Aligned_cols=78 Identities=22% Similarity=0.232 Sum_probs=56.6
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCH--HHHHHHHhc---C-CCceEEE
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL--KDAEEVIEG---I-PNAEAVQ 644 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~--~~a~~l~~~---~-~~~~~~~ 644 (1053)
.++++|+|.| +|++|+.+++.|++.| .+|.+..++. .+++++.+. . .++.++.
T Consensus 53 l~~k~vlITGas~gIG~~~a~~l~~~G--------------------~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (300)
T PRK06128 53 LQGRKALITGADSGIGRATAIAFAREG--------------------ADIALNYLPEEEQDAAEVVQLIQAEGRKAVALP 112 (300)
T ss_pred cCCCEEEEecCCCcHHHHHHHHHHHcC--------------------CEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEe
Confidence 3467899999 6999999999999987 2677766543 233333322 2 2366788
Q ss_pred ecCCCHHHHHHhhc-------cccEEEecCCc
Q 001559 645 LDVSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 645 ~d~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+|++|.+++.++++ ..|+||++++.
T Consensus 113 ~Dl~~~~~v~~~~~~~~~~~g~iD~lV~nAg~ 144 (300)
T PRK06128 113 GDLKDEAFCRQLVERAVKELGGLDILVNIAGK 144 (300)
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence 99999888776654 46999999875
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.033 Score=63.77 Aligned_cols=77 Identities=21% Similarity=0.278 Sum_probs=56.5
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----C--CceEEEec
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----P--NAEAVQLD 646 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~--~~~~~~~d 646 (1053)
++.++|.| +|++|+++|+.|++.| .+|.+++|+.++++++.+.+ + ++..+.+|
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G--------------------~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~D 112 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKG--------------------LNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVD 112 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC--------------------CCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEE
Confidence 57899999 6999999999999987 37899999999888776543 2 35567788
Q ss_pred CCC--HHH---HHHhhcc--ccEEEecCCcc
Q 001559 647 VSD--HKS---LCKCISQ--VEIVISLLPAS 670 (1053)
Q Consensus 647 ~~d--~~~---l~~~i~~--~DvVI~~~p~~ 670 (1053)
+++ .+. +.+.+.+ .|++||+++..
T Consensus 113 l~~~~~~~~~~l~~~~~~~didilVnnAG~~ 143 (320)
T PLN02780 113 FSGDIDEGVKRIKETIEGLDVGVLINNVGVS 143 (320)
T ss_pred CCCCcHHHHHHHHHHhcCCCccEEEEecCcC
Confidence 874 232 3333443 55999998753
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.052 Score=62.10 Aligned_cols=76 Identities=18% Similarity=0.233 Sum_probs=53.0
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCce----EEEecC
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAE----AVQLDV 647 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~----~~~~d~ 647 (1053)
++.+||.|||+|.+|..++..|+..+-+ .++.++|++.++++..+..+.++. -..+-.
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~------------------~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~ 65 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIA------------------DELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYA 65 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCC------------------CEEEEEeCCCchhHHHHHHHHhhccccCCeEEEe
Confidence 4567999999999999999999887622 279999998887766654433211 011111
Q ss_pred CCHHHHHHhhccccEEEecCCc
Q 001559 648 SDHKSLCKCISQVEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~~~DvVI~~~p~ 669 (1053)
.+ . +.++++|+||.+.+.
T Consensus 66 ~~---~-~~~~~adivIitag~ 83 (315)
T PRK00066 66 GD---Y-SDCKDADLVVITAGA 83 (315)
T ss_pred CC---H-HHhCCCCEEEEecCC
Confidence 12 2 446899999999864
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.019 Score=66.22 Aligned_cols=91 Identities=12% Similarity=0.111 Sum_probs=62.7
Q ss_pred eEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHH
Q 001559 576 SVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 576 ~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
+|+|+| +|++|+.+++.|.+++ + +...+.++.+.....+.+. +.+......|.. .
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~-h----------------p~~~l~~~as~~~~g~~~~--~~~~~~~~~~~~-----~ 56 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERN-F----------------PIDKLVLLASDRSAGRKVT--FKGKELEVNEAK-----I 56 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCC-C----------------ChhhEEEEeccccCCCeee--eCCeeEEEEeCC-----h
Confidence 589999 7999999999998854 2 1235555545433222222 222334444442 1
Q ss_pred HhhccccEEEecCCccccHHHHHHHHHhCCeEEEee
Q 001559 655 KCISQVEIVISLLPASCHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 655 ~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~s 690 (1053)
+.++++|+|+.|+|......++...+++|+.+||.|
T Consensus 57 ~~~~~~D~v~~a~g~~~s~~~a~~~~~~G~~VID~s 92 (339)
T TIGR01296 57 ESFEGIDIALFSAGGSVSKEFAPKAAKCGAIVIDNT 92 (339)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHHCCCEEEECC
Confidence 234789999999999988888888889999999998
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.053 Score=61.09 Aligned_cols=79 Identities=18% Similarity=0.125 Sum_probs=52.3
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCce--EEEecCCCHHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAE--AVQLDVSDHKS 652 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~--~~~~d~~d~~~ 652 (1053)
++|+|||+|.+|..++..|++.| .+|++++|+.++.+.+.+.--.+. ..........+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g--------------------~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 60 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAG--------------------HDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADD 60 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--------------------CeEEEEECChHHHHHHHHcCCcccCCceeecccCCCC
Confidence 57999999999999999999887 379999998888777665311110 00000001122
Q ss_pred HHHhhccccEEEecCCccccHH
Q 001559 653 LCKCISQVEIVISLLPASCHVM 674 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~~~~~ 674 (1053)
..+. +.+|+||-+++......
T Consensus 61 ~~~~-~~~d~vila~k~~~~~~ 81 (304)
T PRK06522 61 PAEL-GPQDLVILAVKAYQLPA 81 (304)
T ss_pred hhHc-CCCCEEEEecccccHHH
Confidence 3333 78999999998754333
|
|
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.037 Score=61.56 Aligned_cols=74 Identities=22% Similarity=0.273 Sum_probs=57.5
Q ss_pred CeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEEC-----CHHHHHHHHhcCCCceEEEecCC
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASL-----YLKDAEEVIEGIPNAEAVQLDVS 648 (1053)
Q Consensus 575 ~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r-----~~~~a~~l~~~~~~~~~~~~d~~ 648 (1053)
|++||-| ||++|+..++++.+... +.+|++.|. +.+....+ ...|+..+++.|+.
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~------------------d~~v~~~DkLTYAgn~~~l~~~-~~~~~~~fv~~DI~ 61 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHP------------------DDHVVNLDKLTYAGNLENLADV-EDSPRYRFVQGDIC 61 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCC------------------CceEEEEecccccCCHHHHHhh-hcCCCceEEecccc
Confidence 5788997 99999999999987762 346777776 33333332 34467899999999
Q ss_pred CHHHHHHhhc--cccEEEecC
Q 001559 649 DHKSLCKCIS--QVEIVISLL 667 (1053)
Q Consensus 649 d~~~l~~~i~--~~DvVI~~~ 667 (1053)
|.+.+.++++ +.|+||+.+
T Consensus 62 D~~~v~~~~~~~~~D~VvhfA 82 (340)
T COG1088 62 DRELVDRLFKEYQPDAVVHFA 82 (340)
T ss_pred CHHHHHHHHHhcCCCeEEEec
Confidence 9999999998 589999976
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.033 Score=61.00 Aligned_cols=77 Identities=26% Similarity=0.295 Sum_probs=55.3
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEEC----CHHHHHHHHhcC----CCceEE
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASL----YLKDAEEVIEGI----PNAEAV 643 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r----~~~~a~~l~~~~----~~~~~~ 643 (1053)
+.++++|.| +|++|+++++.|++.| + +|.++.+ +.+.++++.+.+ .++..+
T Consensus 7 ~~k~vlItGa~~gIG~~~a~~l~~~G-~-------------------~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 66 (257)
T PRK12744 7 KGKVVLIAGGAKNLGGLIARDLAAQG-A-------------------KAVAIHYNSAASKADAEETVAAVKAAGAKAVAF 66 (257)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCC-C-------------------cEEEEecCCccchHHHHHHHHHHHHhCCcEEEE
Confidence 457899999 7999999999999887 2 5444433 334444444332 246778
Q ss_pred EecCCCHHHHHHhhc-------cccEEEecCCc
Q 001559 644 QLDVSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 644 ~~d~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++|++|.+++.+++. ..|++|++++.
T Consensus 67 ~~D~~~~~~~~~~~~~~~~~~~~id~li~~ag~ 99 (257)
T PRK12744 67 QADLTTAAAVEKLFDDAKAAFGRPDIAINTVGK 99 (257)
T ss_pred ecCcCCHHHHHHHHHHHHHhhCCCCEEEECCcc
Confidence 999999988876654 46999999864
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.015 Score=60.78 Aligned_cols=101 Identities=12% Similarity=0.129 Sum_probs=66.2
Q ss_pred CCCCCeEEEEEccchhHHHHHHHHhhCCCceecCCCchhhhhcccccCCCCcccceEEEeeeecccccccccCCCCCccc
Q 001559 201 SGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFGKAKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDK 280 (1053)
Q Consensus 201 ~~~~p~~v~i~G~G~vg~gA~~~~~~LGa~~V~~~dl~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~~~~~~~~~ 280 (1053)
..+.-.++.|+|.|+.|+..++.++.+|.+ |...|-.... .. .... .++
T Consensus 32 ~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~-V~~~d~~~~~------------------------~~-~~~~---~~~-- 80 (178)
T PF02826_consen 32 RELRGKTVGIIGYGRIGRAVARRLKAFGMR-VIGYDRSPKP------------------------EE-GADE---FGV-- 80 (178)
T ss_dssp S-STTSEEEEESTSHHHHHHHHHHHHTT-E-EEEEESSCHH------------------------HH-HHHH---TTE--
T ss_pred cccCCCEEEEEEEcCCcCeEeeeeecCCce-eEEecccCCh------------------------hh-hccc---ccc--
Confidence 367779999999999999999999999997 4433310000 00 0000 011
Q ss_pred cccccCccCcCcchhhhccCCCcEEEEcccccCCCCcccCHHHHHHhhcCCCCceEEEEEeecCCCce
Q 001559 281 ADYYAHPEHYNPVFHKKIAPYASVIVNCMYWEQRFPRLLSTQQLQDLVRKGCPLVGISDITCDIGGSL 348 (1053)
Q Consensus 281 ~~~~~~p~~~~~~f~~~~~~~~DilIn~a~~g~~~P~Lit~~~v~~m~k~~~~gsvIvDis~D~gG~i 348 (1053)
.+. .+ +++++.+|+|+++.--....-.+|+++.++.| | +++++|.++ .|+-|
T Consensus 81 --------~~~-~l-~ell~~aDiv~~~~plt~~T~~li~~~~l~~m-k---~ga~lvN~a--RG~~v 132 (178)
T PF02826_consen 81 --------EYV-SL-DELLAQADIVSLHLPLTPETRGLINAEFLAKM-K---PGAVLVNVA--RGELV 132 (178)
T ss_dssp --------EES-SH-HHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTS-T---TTEEEEESS--SGGGB
T ss_pred --------eee-eh-hhhcchhhhhhhhhccccccceeeeeeeeecc-c---cceEEEecc--chhhh
Confidence 011 12 55677899999999987778889999999996 5 789999866 45433
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.12 Score=55.70 Aligned_cols=119 Identities=20% Similarity=0.218 Sum_probs=84.8
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHHHHH
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
|++.+||.|++|..+++.|.+.+ .+|.+.|++++..+++...- ++ .++..+++.
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~g--------------------hdvV~yD~n~~av~~~~~~g--a~----~a~sl~el~ 54 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGG--------------------HDVVGYDVNQTAVEELKDEG--AT----GAASLDELV 54 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCC--------------------CeEEEEcCCHHHHHHHHhcC--Cc----cccCHHHHH
Confidence 46889999999999999999987 38999999998888877653 11 222345566
Q ss_pred HhhccccEEEecCCcc-ccHHHH---HHHHHhCCeEEEee--ccChhHHHHHHHHHHcCCeEEecCCCChhHH
Q 001559 655 KCISQVEIVISLLPAS-CHVMVA---NACIEFKKHLVTAS--YIDDSMSKLDEKAKGAGITILGEMGLDPGID 721 (1053)
Q Consensus 655 ~~i~~~DvVI~~~p~~-~~~~v~---~aci~~g~~~vD~s--y~~~~~~~L~~~Ak~~Gv~~l~g~G~dPGi~ 721 (1053)
+.+..-.+|--++|.+ ....++ ...+++|-.+||-. |..+.. ...++.+++|+.++. +|-.-|+.
T Consensus 55 ~~L~~pr~vWlMvPag~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~-rr~~~l~~kgi~flD-~GTSGG~~ 125 (300)
T COG1023 55 AKLSAPRIVWLMVPAGDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSL-RRAKLLAEKGIHFLD-VGTSGGVW 125 (300)
T ss_pred HhcCCCcEEEEEccCCCchHHHHHHHHhhcCCCCEEEECCccchHHHH-HHHHHHHhcCCeEEe-ccCCCCch
Confidence 6666778898999987 333333 33578888999974 443333 344678899998886 66554543
|
|
| >TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.049 Score=66.17 Aligned_cols=100 Identities=15% Similarity=0.178 Sum_probs=73.5
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHH------HHHHHHhc-CCCceEEEe
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK------DAEEVIEG-IPNAEAVQL 645 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~------~a~~l~~~-~~~~~~~~~ 645 (1053)
+..+|+|+|.|++|+.++..|+..| + .+++..+.|+... +..+++.. .+++.+..+
T Consensus 128 R~akVlVlG~Gg~~s~lv~sL~~sG-~----------------~~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i 190 (637)
T TIGR03693 128 RNAKILAAGSGDFLTKLVRSLIDSG-F----------------PRFHAIVTDAEEHALDRIHELAEIAEETDDALLVQEI 190 (637)
T ss_pred hcccEEEEecCchHHHHHHHHHhcC-C----------------CcEEEEeccccchhhhHHHHHHHHHHHhCCCCceEec
Confidence 5688999999999999999999998 3 2455555555433 22333444 456766667
Q ss_pred cCCCHHHHHHhhccccEEEecCCcccc---HHHHHHHHHhCCeEEEe
Q 001559 646 DVSDHKSLCKCISQVEIVISLLPASCH---VMVANACIEFKKHLVTA 689 (1053)
Q Consensus 646 d~~d~~~l~~~i~~~DvVI~~~p~~~~---~~v~~aci~~g~~~vD~ 689 (1053)
+.+..+++.+.++.+|+||.++.-+.. ..+..+|++.|+..+=+
T Consensus 191 ~~~~~~dl~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPa 237 (637)
T TIGR03693 191 DFAEDQHLHEAFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPA 237 (637)
T ss_pred cCCcchhHHHhhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEE
Confidence 767778899999999999999975543 45778999999765543
|
Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein. |
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.023 Score=61.27 Aligned_cols=91 Identities=20% Similarity=0.163 Sum_probs=63.3
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCcc-EEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDI-RVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~-~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
...+|+|+|+|.+|+.+++++.... . +. -+.++|++++++.+.+. ++. +...+
T Consensus 83 ~~~rV~IIGaG~iG~~l~~~~~~~~-~-----------------g~~ivgv~D~d~~~~~~~i~---g~~-----v~~~~ 136 (213)
T PRK05472 83 RTWNVALVGAGNLGRALLNYNGFEK-R-----------------GFKIVAAFDVDPEKIGTKIG---GIP-----VYHID 136 (213)
T ss_pred CCcEEEEECCCHHHHHHHHhhhccc-C-----------------CcEEEEEEECChhhcCCEeC---CeE-----EcCHH
Confidence 4578999999999999998754211 1 12 46678888765532221 111 12346
Q ss_pred HHHHhhcc--ccEEEecCCccccHHHHHHHHHhCC-eEEEe
Q 001559 652 SLCKCISQ--VEIVISLLPASCHVMVANACIEFKK-HLVTA 689 (1053)
Q Consensus 652 ~l~~~i~~--~DvVI~~~p~~~~~~v~~aci~~g~-~~vD~ 689 (1053)
++.+++++ +|+||-|+|...+..+...|+++|+ +++..
T Consensus 137 ~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~ 177 (213)
T PRK05472 137 ELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNF 177 (213)
T ss_pred HHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeec
Confidence 67777764 9999999999988888999999996 44443
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.046 Score=61.75 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=34.2
Q ss_pred CCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHH
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEE 632 (1053)
Q Consensus 574 ~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~ 632 (1053)
.++|.|||+|.+|..+|..|+..| .+|.++|++.+++++
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G--------------------~~V~~~d~~~~~~~~ 42 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAG--------------------MDVWLLDSDPAALSR 42 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcC--------------------CeEEEEeCCHHHHHH
Confidence 467999999999999999999887 389999999887653
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.069 Score=60.40 Aligned_cols=84 Identities=12% Similarity=0.022 Sum_probs=57.9
Q ss_pred hhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHH-----HHHhcCCCceEEEecCCCHHHHHHhhc
Q 001559 584 RVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAE-----EVIEGIPNAEAVQLDVSDHKSLCKCIS 658 (1053)
Q Consensus 584 ~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~-----~l~~~~~~~~~~~~d~~d~~~l~~~i~ 658 (1053)
+-|+++|+.|++.| ..|.|+||+.++++ .+.+. ++.. .++..++.+
T Consensus 30 ~gGspMArnLlkAG--------------------heV~V~Drnrsa~e~e~~e~Laea--GA~~-------AaS~aEAAa 80 (341)
T TIGR01724 30 YGGSRMAIEFAMAG--------------------HDVVLAEPNREFMSDDLWKKVEDA--GVKV-------VSDDKEAAK 80 (341)
T ss_pred CCHHHHHHHHHHCC--------------------CEEEEEeCChhhhhhhhhHHHHHC--CCee-------cCCHHHHHh
Confidence 56889999999887 38999999876543 23332 1221 124568888
Q ss_pred cccEEEecCCcccc-HHHHH---HHHHhCCeEEEeeccChhH
Q 001559 659 QVEIVISLLPASCH-VMVAN---ACIEFKKHLVTASYIDDSM 696 (1053)
Q Consensus 659 ~~DvVI~~~p~~~~-~~v~~---aci~~g~~~vD~sy~~~~~ 696 (1053)
++|+||.|+|..-+ ..+.. ..+..|+.++|+|.+++..
T Consensus 81 ~ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~STIsP~t 122 (341)
T TIGR01724 81 HGEIHVLFTPFGKGTFSIARTIIEHVPENAVICNTCTVSPVV 122 (341)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEECCCCCHHH
Confidence 99999999997654 23432 2346788899999877654
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.035 Score=62.64 Aligned_cols=74 Identities=16% Similarity=0.308 Sum_probs=50.7
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC-------------Cce
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-------------NAE 641 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-------------~~~ 641 (1053)
++|.|||+|.+|..++..|+..| .+|.++|++.++.++..+.+. ...
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G--------------------~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~ 63 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTG--------------------YDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMS 63 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcC--------------------CeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCC
Confidence 67999999999999999999887 389999999887764332110 000
Q ss_pred E-------EEecCCCHHHHHHhhccccEEEecCCccc
Q 001559 642 A-------VQLDVSDHKSLCKCISQVEIVISLLPASC 671 (1053)
Q Consensus 642 ~-------~~~d~~d~~~l~~~i~~~DvVI~~~p~~~ 671 (1053)
. ..+..+ .++ +.++++|+||.|+|...
T Consensus 64 ~~~~~~~~~~i~~~--~~~-~~~~~aDlVieav~e~~ 97 (291)
T PRK06035 64 EDEAKAIMARIRTS--TSY-ESLSDADFIVEAVPEKL 97 (291)
T ss_pred HHHHHHHHhCcEee--CCH-HHhCCCCEEEEcCcCcH
Confidence 0 000011 122 35688999999998765
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.034 Score=63.19 Aligned_cols=87 Identities=14% Similarity=0.147 Sum_probs=60.0
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
....++|.|||.|.+|+.+|+.|...| .+|.+++|+... .++... .
T Consensus 119 ~L~gktvgIiG~G~IG~~vA~~l~afG--------------------~~V~~~~r~~~~--------~~~~~~------~ 164 (303)
T PRK06436 119 LLYNKSLGILGYGGIGRRVALLAKAFG--------------------MNIYAYTRSYVN--------DGISSI------Y 164 (303)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCC--------------------CEEEEECCCCcc--------cCcccc------c
Confidence 456799999999999999999887766 489999987421 011100 1
Q ss_pred HHHHHhhccccEEEecCCccccH-----HHHHHHHHhCCeEEEeec
Q 001559 651 KSLCKCISQVEIVISLLPASCHV-----MVANACIEFKKHLVTASY 691 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~~-----~v~~aci~~g~~~vD~sy 691 (1053)
.++.++++++|+|+.++|..-.. .-..+.++.|..+|+++-
T Consensus 165 ~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sR 210 (303)
T PRK06436 165 MEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVAR 210 (303)
T ss_pred CCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCC
Confidence 35788899999999999965321 112234566777777763
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.064 Score=59.91 Aligned_cols=97 Identities=14% Similarity=0.228 Sum_probs=71.3
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCC-ceEEEecCCC
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPN-AEAVQLDVSD 649 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~-~~~~~~d~~d 649 (1053)
.....+|+|||.|.+|...|+...-.+ ..|+|.|++.+|.+.+-..+.. +... -++
T Consensus 165 GV~~~kv~iiGGGvvgtnaAkiA~glg--------------------A~Vtild~n~~rl~~ldd~f~~rv~~~---~st 221 (371)
T COG0686 165 GVLPAKVVVLGGGVVGTNAAKIAIGLG--------------------ADVTILDLNIDRLRQLDDLFGGRVHTL---YST 221 (371)
T ss_pred CCCCccEEEECCccccchHHHHHhccC--------------------CeeEEEecCHHHHhhhhHhhCceeEEE---EcC
Confidence 456778999999999999999887666 3899999999999988776642 2322 347
Q ss_pred HHHHHHhhccccEEEecC--CccccHHH----HHHHHHhCCeEEEee
Q 001559 650 HKSLCKCISQVEIVISLL--PASCHVMV----ANACIEFKKHLVTAS 690 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~--p~~~~~~v----~~aci~~g~~~vD~s 690 (1053)
...+++.+.++|+||+++ |..-.+.+ ....++.|..+||++
T Consensus 222 ~~~iee~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 222 PSNIEEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred HHHHHHHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEEEE
Confidence 788999999999999987 43333322 223455666666664
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.021 Score=65.78 Aligned_cols=77 Identities=16% Similarity=0.194 Sum_probs=54.9
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHH--HHHHHh--cCCCceEEEecCC
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKD--AEEVIE--GIPNAEAVQLDVS 648 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~--a~~l~~--~~~~~~~~~~d~~ 648 (1053)
+++|+|.| +|++|+.+++.|.+.| . ..+.+.++.... ...+.. ...+++++.+|++
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g-~------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 61 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINET-S------------------DAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDIC 61 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcC-C------------------CEEEEEecCccccchhhhhhcccCCceEEEECCCc
Confidence 46899999 7999999999999887 2 135555654221 111211 1124667889999
Q ss_pred CHHHHHHhhcc--ccEEEecCCc
Q 001559 649 DHKSLCKCISQ--VEIVISLLPA 669 (1053)
Q Consensus 649 d~~~l~~~i~~--~DvVI~~~p~ 669 (1053)
|.+++.+++++ +|+||+++..
T Consensus 62 d~~~~~~~~~~~~~D~Vih~A~~ 84 (355)
T PRK10217 62 DRAELARVFTEHQPDCVMHLAAE 84 (355)
T ss_pred ChHHHHHHHhhcCCCEEEECCcc
Confidence 99999998885 8999999854
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.045 Score=64.14 Aligned_cols=80 Identities=19% Similarity=0.179 Sum_probs=60.0
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
+..++|+||| +|.+|..++..|.+.| ..|.+++|+..
T Consensus 96 ~~~~~I~IiGG~GlmG~slA~~l~~~G--------------------~~V~~~d~~~~---------------------- 133 (374)
T PRK11199 96 PDLRPVVIVGGKGQLGRLFAKMLTLSG--------------------YQVRILEQDDW---------------------- 133 (374)
T ss_pred cccceEEEEcCCChhhHHHHHHHHHCC--------------------CeEEEeCCCcc----------------------
Confidence 3468899999 9999999999999887 37999998520
Q ss_pred HHHHHhhccccEEEecCCccccHHHHHHH--HHhCCeEEEeeccC
Q 001559 651 KSLCKCISQVEIVISLLPASCHVMVANAC--IEFKKHLVTASYID 693 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~~~v~~ac--i~~g~~~vD~sy~~ 693 (1053)
+...+.++++|+||.|+|......+.... +..|+.++|++...
T Consensus 134 ~~~~~~~~~aDlVilavP~~~~~~~~~~l~~l~~~~iv~Dv~SvK 178 (374)
T PRK11199 134 DRAEDILADAGMVIVSVPIHLTEEVIARLPPLPEDCILVDLTSVK 178 (374)
T ss_pred hhHHHHHhcCCEEEEeCcHHHHHHHHHHHhCCCCCcEEEECCCcc
Confidence 12346678999999999987654444332 45678889987654
|
|
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.057 Score=58.88 Aligned_cols=120 Identities=16% Similarity=0.149 Sum_probs=72.7
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEEC----------CHHHHHHHHhcCCCc
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASL----------YLKDAEEVIEGIPNA 640 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r----------~~~~a~~l~~~~~~~ 640 (1053)
+.+.++|+|.|.|.+|+.+++.|.+.+ . .-|.|+|. +.+++.+..+....+
T Consensus 28 ~l~~~~v~I~G~G~VG~~~a~~L~~~g-~------------------~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l 88 (227)
T cd01076 28 GLAGARVAIQGFGNVGSHAARFLHEAG-A------------------KVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSV 88 (227)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHCC-C------------------EEEEEECCCCeEECCCCCCHHHHHHHHHhcCCc
Confidence 457899999999999999999999887 2 13448888 777766665543321
Q ss_pred eEEE-ecCCCHHHHHHhhccccEEEecCCccc-cHHHHHHHHHhCCeEEEeeccChhHHHHHHHHHHcCCeEEecC
Q 001559 641 EAVQ-LDVSDHKSLCKCISQVEIVISLLPASC-HVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGEM 714 (1053)
Q Consensus 641 ~~~~-~d~~d~~~l~~~i~~~DvVI~~~p~~~-~~~v~~aci~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~~l~g~ 714 (1053)
.... ....+.+.+-.. +|||+|-|++... +...+. +-.+.+|--.-+.+-+.+-.+.-+++|+.++++.
T Consensus 89 ~~~~~~~~~~~~~i~~~--~~Dvlip~a~~~~i~~~~~~---~l~a~~I~egAN~~~t~~a~~~L~~rGi~~~PD~ 159 (227)
T cd01076 89 LGFPGAERITNEELLEL--DCDILIPAALENQITADNAD---RIKAKIIVEAANGPTTPEADEILHERGVLVVPDI 159 (227)
T ss_pred ccCCCceecCCccceee--cccEEEecCccCccCHHHHh---hceeeEEEeCCCCCCCHHHHHHHHHCCCEEEChH
Confidence 1100 000012222222 7999999996543 333222 2234455444443334455566789999998853
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.034 Score=66.17 Aligned_cols=91 Identities=14% Similarity=0.139 Sum_probs=61.1
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
....++|+|+|+|.+|+.+|..+...| .+|.++++++.++.+.... ++.+.
T Consensus 251 ~LaGKtVvViGyG~IGr~vA~~aka~G--------------------a~VIV~e~dp~r~~eA~~~--G~~vv------- 301 (477)
T PLN02494 251 MIAGKVAVICGYGDVGKGCAAAMKAAG--------------------ARVIVTEIDPICALQALME--GYQVL------- 301 (477)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCC--------------------CEEEEEeCCchhhHHHHhc--CCeec-------
Confidence 456899999999999999999998776 3899999998765433222 12221
Q ss_pred HHHHHhhccccEEEecCCccc-cHHHHHHHHHhCCeEEEeec
Q 001559 651 KSLCKCISQVEIVISLLPASC-HVMVANACIEFKKHLVTASY 691 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~-~~~v~~aci~~g~~~vD~sy 691 (1053)
.+.++++++|+||.+++..- -..-...+++.|..++.++.
T Consensus 302 -~leEal~~ADVVI~tTGt~~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 302 -TLEDVVSEADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred -cHHHHHhhCCEEEECCCCccchHHHHHhcCCCCCEEEEcCC
Confidence 24567788999999876431 11222334556666665553
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.032 Score=64.41 Aligned_cols=103 Identities=13% Similarity=0.158 Sum_probs=63.9
Q ss_pred eEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEEC-----CHHHHHHHHhcCCCceEE---Ee--
Q 001559 576 SVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASL-----YLKDAEEVIEGIPNAEAV---QL-- 645 (1053)
Q Consensus 576 ~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r-----~~~~a~~l~~~~~~~~~~---~~-- 645 (1053)
+|.|||+|.+|.++|..|++.+... ..+| +.+|.++.| +.+-.+.+.+...+.+.. .+
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~--------~~~~----~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~ 68 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARAL--------PELF----EESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPA 68 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcc--------cccC----CceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCC
Confidence 5899999999999999999865100 0000 147999998 444444444332222111 01
Q ss_pred cCCCHHHHHHhhccccEEEecCCccccHHHHHH---HHHhCCeEEEee
Q 001559 646 DVSDHKSLCKCISQVEIVISLLPASCHVMVANA---CIEFKKHLVTAS 690 (1053)
Q Consensus 646 d~~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~a---ci~~g~~~vD~s 690 (1053)
++.-..++.++++++|+||-++|......+... .++.++.++.++
T Consensus 69 ~i~at~dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~t 116 (342)
T TIGR03376 69 NLVAVPDLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCI 116 (342)
T ss_pred CeEEECCHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEe
Confidence 111124577889999999999998776555443 345566666665
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.0097 Score=62.48 Aligned_cols=71 Identities=24% Similarity=0.352 Sum_probs=45.3
Q ss_pred eEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCC----------Cce----
Q 001559 576 SVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP----------NAE---- 641 (1053)
Q Consensus 576 ~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~----------~~~---- 641 (1053)
+|.|||+|.+|+.+|..++..| .+|.++|++.+.+++..+.+. ...
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G--------------------~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~ 60 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAG--------------------YEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEA 60 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTT--------------------SEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCC--------------------CcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhh
Confidence 6899999999999999999987 489999999886654332211 000
Q ss_pred -----EEEecCCCHHHHHHhhccccEEEecCCccc
Q 001559 642 -----AVQLDVSDHKSLCKCISQVEIVISLLPASC 671 (1053)
Q Consensus 642 -----~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~ 671 (1053)
-+.+ ..++.++. ++|+||.++|-.+
T Consensus 61 ~~~~~~i~~----~~dl~~~~-~adlViEai~E~l 90 (180)
T PF02737_consen 61 DAALARISF----TTDLEEAV-DADLVIEAIPEDL 90 (180)
T ss_dssp HHHHHTEEE----ESSGGGGC-TESEEEE-S-SSH
T ss_pred hhhhhhccc----ccCHHHHh-hhheehhhccccH
Confidence 0111 12344555 8999999998654
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.024 Score=65.38 Aligned_cols=94 Identities=16% Similarity=0.172 Sum_probs=60.7
Q ss_pred CCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 573 ~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
++++|+|+| +|++|+.+++.|.+++.. ...+..+... +.+.+... +.+ ..+++.+.+
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP-----------------~~~l~~v~s~-~~aG~~l~-~~~---~~l~~~~~~ 60 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFP-----------------VGTLHLLASS-ESAGHSVP-FAG---KNLRVREVD 60 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCC-----------------ceEEEEEECc-ccCCCeec-cCC---cceEEeeCC
Confidence 457999999 699999999999954311 1243333222 22222111 222 112222222
Q ss_pred HHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEee
Q 001559 652 SLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~s 690 (1053)
.. + ++++|+|+-++|......++..+.++|+.+||.|
T Consensus 61 ~~-~-~~~vD~vFla~p~~~s~~~v~~~~~~G~~VIDlS 97 (336)
T PRK05671 61 SF-D-FSQVQLAFFAAGAAVSRSFAEKARAAGCSVIDLS 97 (336)
T ss_pred hH-H-hcCCCEEEEcCCHHHHHHHHHHHHHCCCeEEECc
Confidence 11 2 4789999999998877788888899999999998
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.1 Score=59.77 Aligned_cols=96 Identities=16% Similarity=0.165 Sum_probs=64.1
Q ss_pred CCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCHH
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 572 ~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
...++|+|+|+|++|..+++++...+ .+|+.++|+.++.+.. .++..- ..++.+|.+
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~g--------------------a~Via~~~~~~K~e~a-~~lGAd--~~i~~~~~~ 221 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMG--------------------AEVIAITRSEEKLELA-KKLGAD--HVINSSDSD 221 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC--------------------CeEEEEeCChHHHHHH-HHhCCc--EEEEcCCch
Confidence 45789999999999999999988787 3899999998886543 444321 223444454
Q ss_pred HHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEeec
Q 001559 652 SLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASY 691 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~sy 691 (1053)
.+.++-+.+|++|+++| .........+++.|=.++-+..
T Consensus 222 ~~~~~~~~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~ 260 (339)
T COG1064 222 ALEAVKEIADAIIDTVG-PATLEPSLKALRRGGTLVLVGL 260 (339)
T ss_pred hhHHhHhhCcEEEECCC-hhhHHHHHHHHhcCCEEEEECC
Confidence 44444444999999999 5444444445555444444443
|
|
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.064 Score=64.48 Aligned_cols=79 Identities=18% Similarity=0.208 Sum_probs=63.9
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHH----HhcCC--CceEEE
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEV----IEGIP--NAEAVQ 644 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l----~~~~~--~~~~~~ 644 (1053)
..+|+|+|-| .|-+|+.+++.+++.+. .++.+++|++-+...+ .+.+| ....+.
T Consensus 248 ~~gK~vLVTGagGSiGsel~~qil~~~p-------------------~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~i 308 (588)
T COG1086 248 LTGKTVLVTGGGGSIGSELCRQILKFNP-------------------KEIILFSRDEYKLYLIDMELREKFPELKLRFYI 308 (588)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHhcCC-------------------CEEEEecCchHHHHHHHHHHHhhCCCcceEEEe
Confidence 4578999999 58899999999998862 4899999997766443 34344 356778
Q ss_pred ecCCCHHHHHHhhcc--ccEEEecCCc
Q 001559 645 LDVSDHKSLCKCISQ--VEIVISLLPA 669 (1053)
Q Consensus 645 ~d~~d~~~l~~~i~~--~DvVI~~~p~ 669 (1053)
+|+.|.+.+.+++.+ +|+|++++-+
T Consensus 309 gdVrD~~~~~~~~~~~kvd~VfHAAA~ 335 (588)
T COG1086 309 GDVRDRDRVERAMEGHKVDIVFHAAAL 335 (588)
T ss_pred cccccHHHHHHHHhcCCCceEEEhhhh
Confidence 999999999999998 9999999853
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.0059 Score=61.54 Aligned_cols=73 Identities=22% Similarity=0.248 Sum_probs=52.4
Q ss_pred CeEEEEcC-chhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCC------ceEEEecC
Q 001559 575 SSVLIIGA-GRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPN------AEAVQLDV 647 (1053)
Q Consensus 575 ~~VlIiGa-G~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~------~~~~~~d~ 647 (1053)
+||.|||+ |.+|+.++..|...+-. .++.+.|++.++++..+..+.. .... +..
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~------------------~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~-i~~ 61 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLA------------------DEIVLIDINEDKAEGEALDLSHASAPLPSPVR-ITS 61 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTS------------------SEEEEEESSHHHHHHHHHHHHHHHHGSTEEEE-EEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCC------------------CceEEeccCcccceeeehhhhhhhhhcccccc-ccc
Confidence 58999998 99999999999988632 3799999998877766543321 1111 111
Q ss_pred CCHHHHHHhhccccEEEecCCcc
Q 001559 648 SDHKSLCKCISQVEIVISLLPAS 670 (1053)
Q Consensus 648 ~d~~~l~~~i~~~DvVI~~~p~~ 670 (1053)
...+.++++|+||.+++..
T Consensus 62 ----~~~~~~~~aDivvitag~~ 80 (141)
T PF00056_consen 62 ----GDYEALKDADIVVITAGVP 80 (141)
T ss_dssp ----SSGGGGTTESEEEETTSTS
T ss_pred ----ccccccccccEEEEecccc
Confidence 2246678999999998654
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.033 Score=61.11 Aligned_cols=74 Identities=18% Similarity=0.203 Sum_probs=56.2
Q ss_pred eEEEEc-CchhhHHHHHHHHh----CCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC----C--CceEEE
Q 001559 576 SVLIIG-AGRVCRPAAELLAS----FGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----P--NAEAVQ 644 (1053)
Q Consensus 576 ~VlIiG-aG~vg~~ia~~L~~----~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~--~~~~~~ 644 (1053)
.++|.| +|++|+.+++.|++ .| ..|.+++|+.++++++.+.+ + ++..+.
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g--------------------~~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~ 61 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPG--------------------SVLVLSARNDEALRQLKAEIGAERSGLRVVRVS 61 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCC--------------------cEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEE
Confidence 378888 69999999999987 44 47899999998887776543 2 356788
Q ss_pred ecCCCHHHHHHhhccc-----------cEEEecCCc
Q 001559 645 LDVSDHKSLCKCISQV-----------EIVISLLPA 669 (1053)
Q Consensus 645 ~d~~d~~~l~~~i~~~-----------DvVI~~~p~ 669 (1053)
+|++|.+++.++++.. |+||++++.
T Consensus 62 ~Dl~~~~~v~~~~~~~~~~~g~~~~~~~~lv~nAG~ 97 (256)
T TIGR01500 62 LDLGAEAGLEQLLKALRELPRPKGLQRLLLINNAGT 97 (256)
T ss_pred eccCCHHHHHHHHHHHHhccccCCCceEEEEeCCcc
Confidence 9999988776655421 588888864
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.055 Score=59.03 Aligned_cols=76 Identities=21% Similarity=0.206 Sum_probs=53.8
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEE-CCHHHHHHHHhcC----CCceEEEecC
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVAS-LYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~-r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
.+.++|.| +|++|+++++.|++.| .+|.+.. ++.++++++...+ ..+..+.+|+
T Consensus 4 ~k~~lItGas~gIG~~ia~~l~~~G--------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 63 (252)
T PRK12747 4 GKVALVTGASRGIGRAIAKRLANDG--------------------ALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANL 63 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC--------------------CeEEEEcCCCHHHHHHHHHHHHhcCCceEEEeccc
Confidence 57899999 7999999999999987 2677654 5656655544332 2355678899
Q ss_pred CCHHHHHHhhc-------------cccEEEecCCc
Q 001559 648 SDHKSLCKCIS-------------QVEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~-------------~~DvVI~~~p~ 669 (1053)
++.++...+++ ..|++|++++.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~g~~~id~lv~~Ag~ 98 (252)
T PRK12747 64 ESLHGVEALYSSLDNELQNRTGSTKFDILINNAGI 98 (252)
T ss_pred CCHHHHHHHHHHHHHHhhhhcCCCCCCEEEECCCc
Confidence 87765443221 58999999864
|
|
| >TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.057 Score=59.39 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=22.9
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCC
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFG 597 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g 597 (1053)
+..+|+|+|+|++|..+++.|++.|
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G 34 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLH 34 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHcc
Confidence 5689999999999999999999874
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein. |
| >KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.019 Score=66.76 Aligned_cols=99 Identities=20% Similarity=0.268 Sum_probs=70.7
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECC-------------------HHHH---
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY-------------------LKDA--- 630 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~-------------------~~~a--- 630 (1053)
+..||||+|||++|..+.+.|+..| ++ +|.|+|.+ ..+|
T Consensus 11 ~~~riLvVGaGGIGCELLKnLal~g-f~------------------~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA 71 (603)
T KOG2013|consen 11 KSGRILVVGAGGIGCELLKNLALTG-FE------------------EIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVA 71 (603)
T ss_pred ccCeEEEEecCcccHHHHHHHHHhc-CC------------------eeEEEeccceeccchhhhheeehhhcCchHHHHH
Confidence 4678999999999999999999887 42 55555543 1122
Q ss_pred H-HHHhcCCCc--eEEEecCCCHHHHHHhhccccEEEecCCccc-cHHHHHHHHHhCCeEEEee
Q 001559 631 E-EVIEGIPNA--EAVQLDVSDHKSLCKCISQVEIVISLLPASC-HVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 631 ~-~l~~~~~~~--~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~-~~~v~~aci~~g~~~vD~s 690 (1053)
. .+....|++ ...+.++.+.+--.+..+++|+|.||+..-- ...|.+.|+.+.+++||..
T Consensus 72 ~~~v~~Fnpn~~l~~yhanI~e~~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~a~vPLIesG 135 (603)
T KOG2013|consen 72 AKAVKQFNPNIKLVPYHANIKEPKFNVEFFRQFDIVLNALDNLAARRYVNRMCLAASVPLIESG 135 (603)
T ss_pred HHHHHHhCCCCceEeccccccCcchHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCceecC
Confidence 2 222334554 4556677777555688889999999997543 3567888999999999863
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.05 Score=59.15 Aligned_cols=78 Identities=19% Similarity=0.239 Sum_probs=56.8
Q ss_pred CCCCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcC-----CCceEEEe
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI-----PNAEAVQL 645 (1053)
Q Consensus 572 ~~~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~-----~~~~~~~~ 645 (1053)
.+.++|+|.| +|++|..+++.|++.| .+|.+.+|+.++++++.+.+ .++.++.+
T Consensus 10 ~~~k~vlItG~~g~iG~~la~~l~~~G--------------------~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~ 69 (247)
T PRK08945 10 LKDRIILVTGAGDGIGREAALTYARHG--------------------ATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPL 69 (247)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC--------------------CcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEe
Confidence 4578899998 7999999999999887 37889999988776665433 23556677
Q ss_pred cCC--CHHHHHHhh-------ccccEEEecCCc
Q 001559 646 DVS--DHKSLCKCI-------SQVEIVISLLPA 669 (1053)
Q Consensus 646 d~~--d~~~l~~~i-------~~~DvVI~~~p~ 669 (1053)
|++ +.+++.+++ ...|+||+++..
T Consensus 70 d~~~~~~~~~~~~~~~~~~~~~~id~vi~~Ag~ 102 (247)
T PRK08945 70 DLLTATPQNYQQLADTIEEQFGRLDGVLHNAGL 102 (247)
T ss_pred cccCCCHHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence 775 444443332 357999998854
|
|
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.036 Score=63.59 Aligned_cols=88 Identities=13% Similarity=0.051 Sum_probs=54.4
Q ss_pred CCCCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEEecCCCH
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
....++|+|||+|-+|+.++++|.+.| + .+|+|++|+.+. ..+... .
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g-~------------------~~i~v~nRt~~~-----~~~~~~---------~ 217 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQG-Y------------------SRITFCSRQQLT-----LPYRTV---------V 217 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcC-C------------------CEEEEEcCCccc-----cchhhh---------h
Confidence 356789999999999999999999987 2 379999999742 111100 0
Q ss_pred HHHHHhhccccEEEecCC--ccccHHHHHHHHHh--CCeEEEeec
Q 001559 651 KSLCKCISQVEIVISLLP--ASCHVMVANACIEF--KKHLVTASY 691 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p--~~~~~~v~~aci~~--g~~~vD~sy 691 (1053)
....+...++|+||+|+. ...++.+...-++. ...++|++-
T Consensus 218 ~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~~~~~~r~~iDLAv 262 (338)
T PRK00676 218 REELSFQDPYDVIFFGSSESAYAFPHLSWESLADIPDRIVFDFNV 262 (338)
T ss_pred hhhhhcccCCCEEEEcCCcCCCCCceeeHHHHhhccCcEEEEecC
Confidence 011244568999998742 12222222222221 146889874
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.11 Score=59.68 Aligned_cols=75 Identities=12% Similarity=0.105 Sum_probs=48.8
Q ss_pred CCCeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceE-----EEecC
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEA-----VQLDV 647 (1053)
Q Consensus 573 ~~~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~-----~~~d~ 647 (1053)
+.+||.|||+|.+|..++..|+..+ . ..+.+.|++.++++..+..+..... ..+-.
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~-~------------------~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~ 64 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKN-L------------------GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILG 64 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCC-C------------------CeEEEEECCCccchhHHHHHhhhccccCCCeEEEe
Confidence 4679999999999999999988776 2 2689999987655432221111100 11111
Q ss_pred CCHHHHHHhhccccEEEecCCc
Q 001559 648 SDHKSLCKCISQVEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~~~DvVI~~~p~ 669 (1053)
..+++ .++++|+||.+...
T Consensus 65 --~~d~~-~l~~ADiVVitag~ 83 (319)
T PTZ00117 65 --TNNYE-DIKDSDVVVITAGV 83 (319)
T ss_pred --CCCHH-HhCCCCEEEECCCC
Confidence 12344 66899999999943
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.043 Score=63.65 Aligned_cols=94 Identities=20% Similarity=0.240 Sum_probs=63.8
Q ss_pred CCeEEEEc-CchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHh-cCCC---------ceE
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIE-GIPN---------AEA 642 (1053)
Q Consensus 574 ~~~VlIiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~-~~~~---------~~~ 642 (1053)
+++|+|+| +|++|+.+++.|.+++. .++..+.++...+.+... .++. ...
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~-------------------~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~ 63 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPW-------------------FEVTALAASERSAGKTYGEAVRWQLDGPIPEEVAD 63 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCC-------------------ceEEEEEcChhhcCCcccccccccccccccccccc
Confidence 47899999 79999999999998763 366666555544332221 1110 011
Q ss_pred EEecCCCHHHHHHhhccccEEEecCCccccHHHHHHHHHhCCeEEEee
Q 001559 643 VQLDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 643 ~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~aci~~g~~~vD~s 690 (1053)
..+...+.+. +.++|+|+.|+|......++.++.+.|+.+||.+
T Consensus 64 ~~v~~~~~~~----~~~~DvVf~a~p~~~s~~~~~~~~~~G~~vIDls 107 (349)
T PRK08664 64 MEVVSTDPEA----VDDVDIVFSALPSDVAGEVEEEFAKAGKPVFSNA 107 (349)
T ss_pred eEEEeCCHHH----hcCCCEEEEeCChhHHHHHHHHHHHCCCEEEECC
Confidence 1222223332 3689999999999887778888889999999997
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.057 Score=60.96 Aligned_cols=79 Identities=16% Similarity=0.049 Sum_probs=52.6
Q ss_pred CeEEEEcCchhhHHHHHHHHhCCCCCcccccccccccccCCCccEEEEEECCHHHHHHHHhcCCCceEEE------ecCC
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQ------LDVS 648 (1053)
Q Consensus 575 ~~VlIiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~------~d~~ 648 (1053)
|+|+|+|+|.+|..++..|++.| .+|++++| .++.+++.+. +..... ....
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g--------------------~~V~~~~r-~~~~~~~~~~--g~~~~~~~~~~~~~~~ 57 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAG--------------------RDVTFLVR-PKRAKALRER--GLVIRSDHGDAVVPGP 57 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC--------------------CceEEEec-HHHHHHHHhC--CeEEEeCCCeEEecce
Confidence 57999999999999999999887 27899999 7777766542 111110 0100
Q ss_pred CHHHHHHhhccccEEEecCCccccHHHH
Q 001559 649 DHKSLCKCISQVEIVISLLPASCHVMVA 676 (1053)
Q Consensus 649 d~~~l~~~i~~~DvVI~~~p~~~~~~v~ 676 (1053)
-..+..+....+|+||-|++......+.
T Consensus 58 ~~~~~~~~~~~~d~vilavk~~~~~~~~ 85 (305)
T PRK12921 58 VITDPEELTGPFDLVILAVKAYQLDAAI 85 (305)
T ss_pred eecCHHHccCCCCEEEEEecccCHHHHH
Confidence 0122334557899999999876544433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1053 | ||||
| 1ff9_A | 450 | Apo Saccharopine Reductase Length = 450 | 5e-71 | ||
| 2axq_A | 467 | Apo Histidine-Tagged Saccharopine Dehydrogenase (L- | 6e-67 | ||
| 3abi_A | 365 | Crystal Structure Of L-Lysine Dehydrogenase From Hy | 5e-12 | ||
| 2q99_A | 381 | Crystal Structure Of Saccharopine Dehydrogenase Fro | 1e-04 | ||
| 2qrj_A | 394 | Crystal Structure Of Sulfate-Bound Saccharopine Deh | 2e-04 | ||
| 3ugk_A | 373 | Crystal Structure Of C205s Mutant And Saccharopine | 2e-04 |
| >pdb|1FF9|A Chain A, Apo Saccharopine Reductase Length = 450 | Back alignment and structure |
|
| >pdb|2AXQ|A Chain A, Apo Histidine-Tagged Saccharopine Dehydrogenase (L-Glu Forming) From Saccharomyces Cerevisiae Length = 467 | Back alignment and structure |
|
| >pdb|3ABI|A Chain A, Crystal Structure Of L-Lysine Dehydrogenase From Hyperthermophilic Archaeon Pyrococcus Horikoshii Length = 365 | Back alignment and structure |
|
| >pdb|2Q99|A Chain A, Crystal Structure Of Saccharopine Dehydrogenase From Saccharomyces Cerevisiae Length = 381 | Back alignment and structure |
|
| >pdb|2QRJ|A Chain A, Crystal Structure Of Sulfate-Bound Saccharopine Dehydrogenase (L-Lys Forming) From Saccharomyces Cerevisiae Length = 394 | Back alignment and structure |
|
| >pdb|3UGK|A Chain A, Crystal Structure Of C205s Mutant And Saccharopine Dehydrogenase From Saccharomyces Cerevisiae. Length = 373 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1053 | |||
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 1e-110 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 1e-109 | |
| 2qrj_A | 394 | Saccharopine dehydrogenase, NAD+, L-lysine- formin | 5e-66 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 3e-64 | |
| 3mgj_A | 118 | Uncharacterized protein MJ1480; saccharop_DH_N dom | 1e-19 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 4e-15 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-06 |
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} Length = 467 | Back alignment and structure |
|---|
Score = 350 bits (899), Expect = e-110
Identities = 167/491 (34%), Positives = 254/491 (51%), Gaps = 38/491 (7%)
Query: 563 TATQKGPGTKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLV 622
++ G +VL++G+G V +P + LA+ DI V V
Sbjct: 12 HSSGHIEGRHMGKNVLLLGSGFVAQPVIDTLAAND-------------------DINVTV 52
Query: 623 ASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEF 682
A L +A+ + ++A+ LDV+D +L K ++ ++VISL+P + H V + I
Sbjct: 53 ACRTLANAQA-LAKPSGSKAISLDVTDDSALDKVLADNDVVISLIPYTFHPNVVKSAIRT 111
Query: 683 KKHLVTASYIDDSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMINHAHVRKGKIKSF 742
K +VT+SYI ++ +L+ + AGIT++ E+GLDPGIDH+ A+K I+ H GK+KSF
Sbjct: 112 KTDVVTSSYISPALRELEPEIVKAGITVMNEIGLDPGIDHLYAVKTIDEVHRAGGKLKSF 171
Query: 743 TSYCGGLPSPAAANNPLAYKFSWSPAGAIRAGRNPAIYLFNGKTVQVDGDSLYDSAEKFR 802
SYCGGLP+P ++NPL YKFSWS G + A RN A Y +GK V + L +A+ +
Sbjct: 172 LSYCGGLPAPEDSDNPLGYKFSWSSRGVLLALRNSAKYWKDGKIETVSSEDLMATAKPYF 231
Query: 803 IADLPAFALECLPNRNSLVYGDIYGIGKEASTIFRGTLRYEGFGEIMGTLGRIGFFSAET 862
I AF C PNR+S ++ D+Y I EA T+ RGTLRY+GF E + L +G +
Sbjct: 232 IYPGYAF--VCYPNRDSTLFKDLYHI-PEAETVIRGTLRYQGFPEFVKALVDMGMLKDDA 288
Query: 863 HPVLKQGSGPTFRMFLCEILKMDSQKMGEAPLGEKEITERILSLGHCKERETASKAAKTI 922
+ + + L + L S ++++ I S K+ E +
Sbjct: 289 NEIF--SKPIAWNEALKQYLGAKSTS-------KEDLIASIDSKATWKDDEDRERILSGF 339
Query: 923 IFLGLHEQTEIPASCESPFSVTCLLMEEKLAYSSTEEDMVLLHHEVEVEFPDGQPSENNR 982
+LGL +I + C +EE + Y E DMV+L H+ +E+ DG E
Sbjct: 340 AWLGLFSDAKITPR-GNALDTLCARLEELMQYEDNERDMVVLQHKFGIEWADGTT-ETRT 397
Query: 983 ATLLEFGKMKNGKMISAMALTVGIPAGIAAMLLLVNKIKTRGVLRPIEPEVYVPALDMLQ 1042
+TL+++GK+ S+MA TVG P IA +L IK G+L P PE+ P + L+
Sbjct: 398 STLVDYGKVGG---YSSMAATVGYPVAIATKFVLDGTIKGPGLLAPYSPEINDPIMKELK 454
Query: 1043 A-YGIKLVEKS 1052
YGI L EK+
Sbjct: 455 DKYGIYLKEKT 465
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A Length = 450 | Back alignment and structure |
|---|
Score = 346 bits (887), Expect = e-109
Identities = 171/476 (35%), Positives = 256/476 (53%), Gaps = 35/476 (7%)
Query: 577 VLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEG 636
VL++G+G V RP ++L + I+V VA L+ A+++ G
Sbjct: 6 VLMLGSGFVTRPTLDVLT--------------------DSGIKVTVACRTLESAKKLSAG 45
Query: 637 IPNAEAVQLDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSM 696
+ ++ + LDV+D +L +++ ++VISL+P + H V + I KKH+VT SY+ +M
Sbjct: 46 VQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFHATVIKSAIRQKKHVVTTSYVSPAM 105
Query: 697 SKLDEKAKGAGITILGEMGLDPGIDHMMAMKMINHAHVRKGKIKSFTSYCGGLPSPAAAN 756
+LD+ AK AGIT++ E+GLDPGIDH+ A+K I H GKIK+F SYCGGLP+P +++
Sbjct: 106 MELDQAAKDAGITVMNEIGLDPGIDHLYAIKTIEEVHAAGGKIKTFLSYCGGLPAPESSD 165
Query: 757 NPLAYKFSWSPAGAIRAGRNPAIYLFNGKTVQVDGDSLYDSAEKFRIADLPAFALECLPN 816
NPL YKFSWS G + A RN A + +GK V G L +A+ + I P FA PN
Sbjct: 166 NPLGYKFSWSSRGVLLALRNAASFYKDGKVTNVAGPELMATAKPYFI--YPGFAFVAYPN 223
Query: 817 RNSLVYGDIYGIGKEASTIFRGTLRYEGFGEIMGTLGRIGFFSAETHPVLKQGSGPTFRM 876
R+S Y + Y I EA I RGTLRY+GF + + L IGF S E P LK+ ++
Sbjct: 224 RDSTPYKERYQI-PEADNIVRGTLRYQGFPQFIKVLVDIGFLSDEEQPFLKE--AIPWKE 280
Query: 877 FLCEILKMDSQKMGEAPLGEKEITERILSLGHCKERETASKAAKTIIFLGLHEQTEIPAS 936
+I+K S E++I I+S + E + + +LG+ +I
Sbjct: 281 ATQKIVKASS-------ASEQDIVSTIVSNATFESTEEQKRIVAGLKWLGIFSDKKITPR 333
Query: 937 CESPFSVTCLLMEEKLAYSSTEEDMVLLHHEVEVEFPDGQPSENNRATLLEFGKMKNGKM 996
+ C +EEK+ + E D+V+L H+ E+E DG E ++L E+G
Sbjct: 334 G-NALDTLCATLEEKMQFEEGERDLVMLQHKFEIENKDGSR-ETRTSSLCEYGAPIGSGG 391
Query: 997 ISAMALTVGIPAGIAAMLLLVNKIKTRGVLRPIEPEVYVPALDML-QAYGIKLVEK 1051
SAMA VG+P +A +L I RGVL P+ ++ P + L + YGI+ EK
Sbjct: 392 YSAMAKLVGVPCAVAVKFVLDGTISDRGVLAPMNSKINDPLMKELKEKYGIECKEK 447
|
| >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* Length = 394 | Back alignment and structure |
|---|
Score = 227 bits (579), Expect = 5e-66
Identities = 74/413 (17%), Positives = 132/413 (31%), Gaps = 82/413 (19%)
Query: 8 VVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPSTKRIHHDVLYEDVGCQ 67
+ + +E E RA LTP+ +L+ G +I V+ S + + Y G
Sbjct: 26 TLHLRAE-TKPLEARAALTPTTVKKLIAKG------FKIYVEDSPQSTFNINEYRQAGAI 78
Query: 68 ISEDLSE-----CGLVLGIKQ-PKLEMILPDKAYAFFSHTHKAQRENMPLLDKILAERVS 121
I S +++G+K+ P+ + + F+H +K Q +L + + +
Sbjct: 79 IVPAGSWKTAPRDRIIIGLKEMPETDTFPLVHEHIQFAHCYKDQAGWQNVLMRFIKGHGT 138
Query: 122 LYDYELIVGDNGRRLLAFGKFAGRAGMIDFLHGLGQRYLSLGYSTPFLSLGASYMYSSLA 181
LYD E + D GRR+ AFG +AG AG + + L A Y
Sbjct: 139 LYDLEFLENDQGRRVAAFGFYAGFAGAALGVRDWAFKQTHSD----DEDLPAVSPY---P 191
Query: 182 AAKAAVISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELF 241
KA V V ++ P V I G GA ++ +
Sbjct: 192 NEKALVKDVTKDYKEALATGARKPTVLIIGALGRCGSGAIDLLHKVGIPDA--------- 242
Query: 242 GKAKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAPY 301
+ D + + P+
Sbjct: 243 --------------------------NILKWDIKETSRGGPFDEIPQA------------ 264
Query: 302 ASVIVNCMYWEQRFPRLLSTQQLQDLVRKGCPLVGISDITCDIGG---SLEFVNRTTSID 358
+ +NC+Y + + ++L + R+ + D++ D + T +
Sbjct: 265 -DIFINCIYLSKPIAPFTNMEKLNNPNRRLRT---VVDVSADTTNPHNPIPIYTVATVFN 320
Query: 359 SSFFRYDPLSDSYHDDLEGNGLVCQAVDTLPTEFAKEASQHFGDILLEFIGSL 411
G L ++D LP+ +EAS+ F LL + L
Sbjct: 321 KPTVLV--------PTTAGPKLSVISIDHLPSLLPREASEFFSHDLLPSLELL 365
|
| >3mgj_A Uncharacterized protein MJ1480; saccharop_DH_N domain, NESG, structural genomics, PSI-2, protein structure initiative; 2.70A {Methanocaldococcus jannaschii} Length = 118 | Back alignment and structure |
|---|
Score = 84.8 bits (210), Expect = 1e-19
Identities = 16/75 (21%), Positives = 37/75 (49%)
Query: 471 VSLSGHLFDQFLINEALDIIEAAGGSFHLVKCQVGQSTEALSFSELEVGADDSAVLDQII 530
+ L GH+ D ++ + D I GG + +++ ++G+ S++++ V D +D+I+
Sbjct: 6 IELRGHIIDSLILPKVFDKILDMGGDYKVLEFEIGKRKTDPSYAKILVIGRDERHVDEIL 65
Query: 531 DSLTSLANASENNRD 545
+ L L +
Sbjct: 66 NELRDLGAEIPEIEE 80
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} Length = 118 | Back alignment and structure |
|---|
Score = 71.8 bits (176), Expect = 4e-15
Identities = 26/136 (19%), Positives = 45/136 (33%), Gaps = 34/136 (25%)
Query: 577 VLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEG 636
+ ++GAG++ + A LL + + V VA L +
Sbjct: 8 ICVVGAGKIGQMIAALLKTSS-------------------NYSVTVADHDLAALAVLNR- 47
Query: 637 IPNAEAVQLDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYID--- 693
Q+D D L K + + VIS P ++A A H Y D
Sbjct: 48 -MGVATKQVDAKDEAGLAKALGGFDAVISAAPFFLTPIIAKAAKAAGAH-----YFDLTE 101
Query: 694 -----DSMSKLDEKAK 704
+++ L E ++
Sbjct: 102 DVAATNAVRALVEDSQ 117
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 2e-06
Identities = 51/389 (13%), Positives = 114/389 (29%), Gaps = 80/389 (20%)
Query: 395 EASQHFGDILLEFIGSLSSTVDFTELPSHLRRACIAHGGALTTLYEYIPRMRKSDSEDVS 454
E + DIL F + D ++ + L+ E++
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDMPK-------SILS-------------KEEID 52
Query: 455 DNLAKGHSNKKKHNLLVSL---SGHLFDQFLINEALD-----IIEAAGGSFHLVKCQVGQ 506
+ + L +L + +F + E L ++ + +
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKF-VEEVLRINYKFLMSP----IK-TEQRQPS 106
Query: 507 STEALSFSELEVGADDSAVLDQ----IIDSLTSLANASENNRDQISGINRISLR----IG 558
+ + + +D+ V + + L A R + + G
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA----KNVLIDGVLGSG 162
Query: 559 K---VQETATQKGPGTKGTSSVLIIGAGRVCRPAAELL----------ASFGSPSHQMQK 605
K + K + + P L ++ S S
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 606 TCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQ-LDVSDHKSLCKCI--SQVEI 662
+ Q ++R L+ S ++ V+ + NA+A ++S CK + ++ +
Sbjct: 223 IKLRIH-SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS-----CKILLTTRFKQ 276
Query: 663 VISLLPAS--CHVMVANACIEFKKH----LVTASYIDDSMSKLDEKAKGAG---ITILGE 713
V L A+ H+ + + + L+ Y+D L + ++I+ E
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLL-LKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 714 MGLDPGIDHMMAMKMINHAHVRKGKIKSF 742
+ G+ K +N + I+S
Sbjct: 336 S-IRDGLATWDNWKHVNCDKLTT-IIESS 362
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1053 | ||||
| d1e5qa2 | 267 | d.81.1.2 (A:125-391) Saccharopine reductase {Rice | 3e-77 | |
| d1e5qa1 | 182 | c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase | 7e-16 | |
| d1pjca2 | 193 | c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogen | 1e-06 |
| >d1e5qa2 d.81.1.2 (A:125-391) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 267 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: Homoserine dehydrogenase-like domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 252 bits (644), Expect = 3e-77
Identities = 102/274 (37%), Positives = 146/274 (53%), Gaps = 14/274 (5%)
Query: 716 LDPGIDHMMAMKMINHAHVRKGKIKSFTSYCGGLPSPAAANNPLAYKFSWSPAGAIRAGR 775
LDPGIDH+ A+K I H GKIK+F SYCGGLP+P +++NPL YKFSWS G + A R
Sbjct: 1 LDPGIDHLYAIKTIEEVHAAGGKIKTFLSYCGGLPAPESSDNPLGYKFSWSSRGVLLALR 60
Query: 776 NPAIYLFNGKTVQVDGDSLYDSAEKFRIADLPAFALECLPNRNSLVYGDIYGIGKEASTI 835
N A + +GK V G L +A+ + I P FA PNR+S Y + Y I + A I
Sbjct: 61 NAASFYKDGKVTNVAGPELMATAKPYFI--YPGFAFVAYPNRDSTPYKERYQIPE-ADNI 117
Query: 836 FRGTLRYEGFGEIMGTLGRIGFFSAETHPVLKQGSGPTFRMFLCEILKMDSQKMGEAPLG 895
RGTLRY+GF + + L IGF S E P LK+ ++ +I+K S
Sbjct: 118 VRGTLRYQGFPQFIKVLVDIGFLSDEEQPFLKE--AIPWKEATQKIVKASS-------AS 168
Query: 896 EKEITERILSLGHCKERETASKAAKTIIFLGLHEQTEIPASCESPFSVTCLLMEEKLAYS 955
E++I I+S + E + + +LG+ +I + C +EEK+ +
Sbjct: 169 EQDIVSTIVSNATFESTEEQKRIVAGLKWLGIFSDKKIT-PRGNALDTLCATLEEKMQFE 227
Query: 956 STEEDMVLLHHEVEVEFPDGQPSENNRATLLEFG 989
E D+V+L H+ E+E DG E ++L E+G
Sbjct: 228 EGERDLVMLQHKFEIENKDGS-RETRTSSLCEYG 260
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 74.7 bits (182), Expect = 7e-16
Identities = 56/188 (29%), Positives = 95/188 (50%), Gaps = 27/188 (14%)
Query: 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEV 633
T SVL++G+G V RP ++L + I+V VA L+ A+++
Sbjct: 2 TKSVLMLGSGFVTRPTLDVLT--------------------DSGIKVTVACRTLESAKKL 41
Query: 634 IEGIPNAEAVQLDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYID 693
G+ ++ + LDV+D +L +++ ++VISL+P + H V + I KKH+VT SY+
Sbjct: 42 SAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFHATVIKSAIRQKKHVVTTSYVS 101
Query: 694 DSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMKMINHAHVRKGKIKSFTSYCGGLPSP- 752
+M +LD+ AK AGIT++ E+G + + V G I G+ +P
Sbjct: 102 PAMMELDQAAKDAGITVMNEIGYSAMAKLVGVPCAVAVKFVLDGTIS-----DRGVLAPM 156
Query: 753 -AAANNPL 759
+ N+PL
Sbjct: 157 NSKINDPL 164
|
| >d1pjca2 c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} Length = 193 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: L-alanine dehydrogenase-like domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Score = 48.1 bits (114), Expect = 1e-06
Identities = 24/165 (14%), Positives = 48/165 (29%), Gaps = 21/165 (12%)
Query: 9 VGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQ--PSTKRIHHDVLYEDVGC 66
+G+ E N+ E R L+PS L+ +G + ++ D Y G
Sbjct: 3 IGVPKEIKNQ-EFRVGLSPSSVRTLVEAG------HTVFIETQAGIGAGFADQDYVQAGA 55
Query: 67 QISEDLSECG------LVLGIKQPKLEMILPDKAYAFFSHTHKAQRENMPLLDKILAERV 120
Q+ + V + +++ D+ + H A+ L+ +
Sbjct: 56 QVVPSAKDAWSREMVVKVKEPLPAEYDLMQKDQLLFTYLHLAAARELTEQLMRV----GL 111
Query: 121 SLYDYELIVGDNGRRLL--AFGKFAGRAGMIDFLHGLGQRYLSLG 163
+ YE + N L + + L
Sbjct: 112 TAIAYETVELPNRSLPLLTPMSIIVPWTATQALNNSTLPYVVKLA 156
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1053 | |||
| d1e5qa2 | 267 | Saccharopine reductase {Rice blast fungus (Magnapo | 100.0 | |
| d1l7da2 | 194 | Nicotinamide nucleotide transhydrogenase dI compon | 100.0 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 100.0 | |
| d1pjca2 | 193 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 100.0 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 99.98 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 99.59 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 99.54 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 99.54 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 99.53 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 99.42 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 99.35 | |
| d1vi2a2 | 102 | Putative shikimate dehydrogenase YdiB {Escherichia | 99.1 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 99.06 | |
| d1nyta2 | 101 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 99.04 | |
| d1p77a2 | 101 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 99.02 | |
| d1nvta2 | 110 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 98.91 | |
| d1npya2 | 102 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 98.85 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 98.69 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 98.66 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 98.64 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 98.63 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 98.58 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 98.58 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 98.54 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 98.54 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 98.48 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 98.47 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 98.45 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 98.41 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.4 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 98.39 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 98.36 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 98.28 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 98.22 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 98.21 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 98.16 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 98.15 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 98.15 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 98.14 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 98.13 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 98.12 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 98.1 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 98.07 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 98.03 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 98.03 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 98.03 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 98.02 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 98.02 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 98.02 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 98.01 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 98.01 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 98.0 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 98.0 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 97.99 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 97.98 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 97.98 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 97.98 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 97.96 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 97.96 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 97.95 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 97.95 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 97.94 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 97.93 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 97.93 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 97.93 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 97.92 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 97.92 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 97.92 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 97.91 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 97.9 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 97.9 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 97.9 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 97.89 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 97.88 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 97.87 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 97.87 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 97.84 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 97.84 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 97.8 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 97.76 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 97.76 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 97.76 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 97.74 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 97.74 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 97.72 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 97.72 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 97.71 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 97.7 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 97.7 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 97.69 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 97.68 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 97.67 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 97.67 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 97.67 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 97.64 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 97.62 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 97.62 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 97.58 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 97.57 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 97.57 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 97.54 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.51 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 97.5 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 97.49 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 97.49 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 97.46 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.45 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 97.45 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 97.43 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 97.43 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 97.42 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 97.39 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 97.39 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.36 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 97.36 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 97.36 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.29 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 97.27 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 97.27 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 97.26 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.25 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 97.22 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 97.21 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 97.17 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 97.16 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 97.15 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 97.13 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.12 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 97.09 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 97.07 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 97.02 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 97.02 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 97.02 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 97.01 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 97.0 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 97.0 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 96.98 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 96.98 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 96.97 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 96.97 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.94 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 96.93 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 96.93 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 96.92 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 96.91 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 96.91 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.91 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 96.9 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 96.89 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 96.89 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 96.89 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 96.88 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 96.87 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 96.85 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 96.75 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 96.74 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 96.71 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 96.64 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 96.64 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 96.57 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 96.55 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 96.54 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.53 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 96.51 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 96.51 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 96.49 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 96.48 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 96.45 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 96.43 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 96.42 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 96.42 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 96.37 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.35 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.34 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 96.3 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 96.29 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 96.29 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 96.28 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 96.25 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.23 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 96.22 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 96.11 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 96.11 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.08 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 96.08 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 96.0 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.99 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 95.96 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 95.95 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 95.94 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 95.88 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 95.88 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 95.85 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 95.81 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 95.77 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 95.73 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 95.7 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 95.63 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.63 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 95.59 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.51 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 95.48 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 95.45 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 95.43 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 95.36 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 95.32 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.3 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 95.29 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 95.23 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 95.14 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 95.08 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 95.06 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 95.03 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 95.02 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 95.0 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 94.94 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 94.86 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 94.83 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 94.8 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 94.79 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 94.64 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 94.62 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 94.57 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 94.47 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.42 | |
| d1gado1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.29 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 94.29 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 94.28 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 94.23 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 94.22 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 94.19 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 94.06 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 94.03 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 94.03 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 93.89 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 93.88 | |
| d1obfo1 | 173 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 93.88 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 93.83 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 93.8 | |
| d1u8fo1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 93.74 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 93.6 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 93.54 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 93.53 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 93.44 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 93.43 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 93.37 | |
| d3cmco1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 93.23 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 93.04 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 92.87 | |
| d2g82a1 | 168 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 92.86 | |
| d1oi7a1 | 121 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 92.82 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 92.81 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 92.67 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 92.62 | |
| d1ebfa1 | 168 | Homoserine dehydrogenase {Baker's yeast (Saccharom | 92.62 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 92.52 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 92.47 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 92.28 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 92.07 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 92.01 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 91.77 | |
| d1gsoa2 | 105 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 91.68 | |
| d2b4ro1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 91.65 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 91.55 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 91.5 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 91.5 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 91.48 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 91.43 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 91.42 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 91.39 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 91.31 | |
| d2nu7a1 | 119 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 91.28 | |
| d1dssg1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 91.0 | |
| d1l7da2 | 194 | Nicotinamide nucleotide transhydrogenase dI compon | 90.84 | |
| d1rm4a1 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 90.32 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 90.3 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 90.15 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 90.15 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 90.03 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 89.93 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 89.89 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 89.89 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 89.88 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 89.71 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 89.62 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 89.55 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 89.32 | |
| d1hdgo1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 89.29 | |
| d1pj3a1 | 294 | Mitochondrial NAD(P)-dependent malic enzyme {Human | 88.97 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 88.43 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 88.3 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 88.23 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 88.04 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 87.58 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 87.52 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 87.41 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 86.99 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 86.68 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 86.61 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 86.59 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 86.52 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 86.06 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 85.87 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 85.82 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 85.69 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 85.58 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 85.13 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 84.68 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 84.64 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 84.62 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 84.61 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 84.57 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 84.53 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 84.22 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 84.05 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 83.77 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 83.72 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 82.81 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 82.63 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 82.56 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 82.27 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 82.19 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 81.01 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 80.94 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 80.78 | |
| d1ofua1 | 198 | Cell-division protein FtsZ {Pseudomonas aeruginosa | 80.61 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 80.46 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 80.25 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 80.16 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 80.16 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 80.14 |
| >d1e5qa2 d.81.1.2 (A:125-391) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: Homoserine dehydrogenase-like domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=100.00 E-value=0 Score=422.59 Aligned_cols=262 Identities=39% Similarity=0.694 Sum_probs=238.5
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEECCEEEEECCCCCC
Q ss_conf 98247899999999986001484379985106988877778944654446988899840398258889989995398765
Q 001559 716 LDPGIDHMMAMKMINHAHVRKGKIKSFTSYCGGLPSPAAANNPLAYKFSWSPAGAIRAGRNPAIYLFNGKTVQVDGDSLY 795 (1053)
Q Consensus 716 ~dPGi~~mla~~~~~~~~~~~~~v~sf~~~~Gg~p~p~~~~~pl~y~~swsp~~~l~~~~~p~~~~~~G~~~~v~~~~~~ 795 (1053)
+|||+|||+|++++++++..+++|.+|++||||+|+|++++|||+|||||||+++|.++.+||++++||+.+.|++.+++
T Consensus 1 LdPGidhm~A~~~i~~~~~~~g~i~~f~s~cGGLp~p~~~~np~~YkfsWsp~gvi~~~~~~A~~~~~G~~~~v~~~~~~ 80 (267)
T d1e5qa2 1 LDPGIDHLYAIKTIEEVHAAGGKIKTFLSYCGGLPAPESSDNPLGYKFSWSSRGVLLALRNAASFYKDGKVTNVAGPELM 80 (267)
T ss_dssp BTTBHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEECGGGCCSTTSCCBSSCHHHHHHHTTCCEEEEETTEEEEECGGGSG
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCEEEECCCHHHHHHCCCCEEEECCEEEEECCHHHH
T ss_conf 98847799999999999865995889999856722777899976245776633667874585415307918997787764
Q ss_pred CCCEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 66428872179865021046888653101038576766000011122567899999887087778885333589998899
Q 001559 796 DSAEKFRIADLPAFALECLPNRNSLVYGDIYGIGKEASTIFRGTLRYEGFGEIMGTLGRIGFFSAETHPVLKQGSGPTFR 875 (1053)
Q Consensus 796 ~~~~~~~~p~~~~~~~e~~~n~dsl~~~~~ygi~~~~~tl~r~TlRy~G~~~~~~~L~~lGLl~~~~~~~~~~g~~~s~~ 875 (1053)
...+++++ ++++.+|+||||||+.|.+.|++ ++++||.||||||+|||+.|++|++|||+++++...+ ....+|+
T Consensus 81 ~~~~~~~~--~~~~~~E~~pnrdsl~y~~~y~~-~~i~t~~rgTLRy~G~~~~~~~l~~lGl~~~~~~~~l--~~~~t~~ 155 (267)
T d1e5qa2 81 ATAKPYFI--YPGFAFVAYPNRDSTPYKERYQI-PEADNIVRGTLRYQGFPQFIKVLVDIGFLSDEEQPFL--KEAIPWK 155 (267)
T ss_dssp GGCEECCS--STTBCEEEEECSBCTTHHHHTTC-TTCSEEEEEEEEETTHHHHHHHHHHTTTTCCCCCGGG--GSCCBHH
T ss_pred HHCEEEEC--CCCCCEEEEECCCCCCHHHHHCC-CCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC--CCCCCHH
T ss_conf 00122221--68753478764898532345348-6065544432126666889999998774167765344--6899989
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999930166567999998678999998307650245599999987864255575347898992578589978760489
Q 001559 876 MFLCEILKMDSQKMGEAPLGEKEITERILSLGHCKERETASKAAKTIIFLGLHEQTEIPASCESPFSVTCLLMEEKLAYS 955 (1053)
Q Consensus 876 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~p~d~~~~~L~~~l~~~ 955 (1053)
+++..+++. .+.++.++....+........+...++++.++|+|+|++++++ +.++|+|+||.+|++||+|.
T Consensus 156 ~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~wLGlf~~~~v~-~~~tp~d~L~~~Le~Kl~~~ 227 (267)
T d1e5qa2 156 EATQKIVKA-------SSASEQDIVSTIVSNATFESTEEQKRIVAGLKWLGIFSDKKIT-PRGNALDTLCATLEEKMQFE 227 (267)
T ss_dssp HHHHHHHTC-------SSSSHHHHHHHHHHHSCCSSHHHHHHHHHHHHHHTTTSSSBCC-CCSSHHHHHHHHHHHHSBCC
T ss_pred HHHHHHHCC-------CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHHHHHHHCCC
T ss_conf 999998576-------8753157789987640015645578999888873678877668-89998999999999984789
Q ss_pred CCCCCEEEEEEEEEEECCCCEEEEEEEEEEEEECCC
Q ss_conf 999865999999999969980332699999992102
Q 001559 956 STEEDMVLLHHEVEVEFPDGQPSENNRATLLEFGKM 991 (1053)
Q Consensus 956 p~e~D~v~l~~~v~g~~~~g~~~~~~~~tl~~~g~~ 991 (1053)
++|+|||+|+|+|+..+++|+. ++++++|+.||++
T Consensus 228 ~~ErDMIvM~H~f~~~~~dG~~-e~~tstlv~~G~p 262 (267)
T d1e5qa2 228 EGERDLVMLQHKFEIENKDGSR-ETRTSSLCEYGAP 262 (267)
T ss_dssp TTCCEEEEEEEEEEEECTTSCE-EEEEEEEEEECCC
T ss_pred CCCCEEEEEEEEEEEECCCCCE-EEEEEEEEEECCC
T ss_conf 9884389999899998489985-8999867997477
|
| >d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: L-alanine dehydrogenase-like domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=100.00 E-value=1.8e-34 Score=239.40 Aligned_cols=176 Identities=14% Similarity=0.175 Sum_probs=151.2
Q ss_pred EEEEEEECCCCCCCCCEECCHHHHHHHHHCCCCCCCEEEEEECCCC--CCCCCCHHHHHCCCEECCCC----CCCCEEEE
Q ss_conf 0999960049999731005957899998639999640599981899--99899846763894983588----76777995
Q 001559 7 GVVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPST--KRIHHDVLYEDVGCQISEDL----SECGLVLG 80 (1053)
Q Consensus 7 ~~IGi~~E~~~~~ErRv~ltP~~v~~L~~~G~~~~~~~~V~VE~~~--~~~F~D~~Y~~aGA~I~~~~----~~adiIl~ 80 (1053)
|.|||+||++ ++|+||+|||++|++|+++| ++|+||+|+ .++|+|++|+++||+|+++. .++|+|++
T Consensus 1 M~Igv~kE~~-~~E~RValtP~~vkkl~~~G------~~V~vE~gaG~~a~fsD~~Y~~aGA~i~~~~~~~~~~~diilk 73 (194)
T d1l7da2 1 MKIAIPKERR-PGEDRVAISPEVVKKLVGLG------FEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWK 73 (194)
T ss_dssp CEEEECCCCS-TTCCCCSCCHHHHHHHHHTT------CEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEE
T ss_pred CEEEEEECCC-CCCCEEECCHHHHHHHHHCC------CEEEEECCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCEEE
T ss_conf 9799950689-99707405899999999789------9999972840112778788997532000014565421331267
Q ss_pred ECCCCCC--------CCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCC---CCCC-CCHHHHHHHHHHH
Q ss_conf 1599923--------55799749997355333479999999999759929980243387---8865-3417789999999
Q 001559 81 IKQPKLE--------MILPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYELIVGD---NGRR-LLAFGKFAGRAGM 148 (1053)
Q Consensus 81 VKep~~~--------~l~~~~t~i~fsh~~k~q~~n~~ll~~ll~k~itlid~E~i~~~---~~~r-l~~fg~~AG~ag~ 148 (1053)
|++|... .+.+++++++|.|++ .|.++++.+.++++|+|+||+|||+ |.|+ |++|+++|||.++
T Consensus 74 V~~P~~~e~~~~ei~~lk~g~~li~~l~p~----~~~~~~~~l~~~~it~~a~e~ipRisraQ~md~Lssqa~iaG~~a~ 149 (194)
T d1l7da2 74 VQRPMTAEEGTDEVALIKEGAVLMCHLGAL----TNRPVVEALTKRKITAYAMELMPRISRAQSMDILSSQSNLVAADAS 149 (194)
T ss_dssp EECCCCGGGSCCGGGGSCTTCEEEEECCGG----GCHHHHHHHHHTTCEEEEGGGCCCSGGGGGGCHHHHHHHHGHHHHH
T ss_pred ECCCCCCCCCHHHHHHCCCCEEEEEECCCC----CCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 458754545646764326763999851644----4616778987567369850003435778864776762334437689
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCC
Q ss_conf 99999852754304898875445510001219999999974032223159998878849999855212898999996299
Q 001559 149 IDFLHGLGQRYLSLGYSTPFLSLGASYMYSSLAAAKAAVISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLP 228 (1053)
Q Consensus 149 ~~~l~~lg~~~l~~g~~tpf~~~~~~~~~~~~~~~~~a~~~~g~~i~~~g~p~~i~p~~v~i~G~G~vg~gA~~~~~~Lg 228 (1053)
+.+.+.|.+++.. +. + .+.+++++|.|+++.+|+.++++ |
T Consensus 150 ~~~a~~l~~~~~~------~~--------------------------------~-~~~~~lvig~~~~~l~~i~~~~~-G 189 (194)
T d1l7da2 150 PLFAKNLLNFLTP------HV--------------------------------D-KDTKTLVMKLEDETVSGTCVTRD-G 189 (194)
T ss_dssp HHHHHHHHHHHGG------GE--------------------------------E-TTTTEECCCTTCHHHHHHEEEET-T
T ss_pred HHHHHHHHHHHHH------CC--------------------------------C-CCCCEEEECCHHHHHHHHEEECC-C
T ss_conf 9999998865432------04--------------------------------6-67767997852876545225237-7
Q ss_pred CCEECC
Q ss_conf 925247
Q 001559 229 HTFVEP 234 (1053)
Q Consensus 229 a~~V~~ 234 (1053)
+. |+|
T Consensus 190 ~i-v~~ 194 (194)
T d1l7da2 190 AI-VHP 194 (194)
T ss_dssp EE-CCC
T ss_pred CE-ECC
T ss_conf 46-085
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=100.00 E-value=8.4e-35 Score=241.55 Aligned_cols=167 Identities=20% Similarity=0.219 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHCCCCCCCCCCEEEEEECCCHHHHHHHH
Q ss_conf 99999999999852754304898875445510001219999999974032223159998878849999855212898999
Q 001559 143 AGRAGMIDFLHGLGQRYLSLGYSTPFLSLGASYMYSSLAAAKAAVISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQE 222 (1053)
Q Consensus 143 AG~ag~~~~l~~lg~~~l~~g~~tpf~~~~~~~~~~~~~~~~~a~~~~g~~i~~~g~p~~i~p~~v~i~G~G~vg~gA~~ 222 (1053)
||+.+++.+.+.|.+.+. |++++.+|+| +++|++++|+|+|+||++|+.
T Consensus 1 AG~~av~~ga~~L~~~~g------------------------------G~G~Llgg~~-gv~pa~V~ViGaGvaG~~A~~ 49 (168)
T d1pjca1 1 AGRLSVQFGARFLERQQG------------------------------GRGVLLGGVP-GVKPGKVVILGGGVVGTEAAK 49 (168)
T ss_dssp HHHHHHHHHHHHTSGGGT------------------------------SCCCCTTCBT-TBCCCEEEEECCSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCC------------------------------CCEEEECCCC-CCCCCEEEEECCCHHHHHHHH
T ss_conf 957999999998504059------------------------------9679824899-988707999888859999999
Q ss_pred HHHHCCCCEECCCCCHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 99629992524799134320013457998654107874452211100024999875510122395676720242105979
Q 001559 223 IFKLLPHTFVEPSRLPELFGKAKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAPYA 302 (1053)
Q Consensus 223 ~~~~Lga~~V~~~dl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~y~~~f~~~~~~~~ 302 (1053)
++++||++ |+++|.+....+ +. + ..| .. ..+..+.+++ .+ ++.++.+
T Consensus 50 ~A~~lGA~-V~~~D~~~~~l~---~l----~---~~~---------~~--------~~~~~~~~~~----~l-~~~~~~a 96 (168)
T d1pjca1 50 MAVGLGAQ-VQIFDINVERLS---YL----E---TLF---------GS--------RVELLYSNSA----EI-ETAVAEA 96 (168)
T ss_dssp HHHHTTCE-EEEEESCHHHHH---HH----H---HHH---------GG--------GSEEEECCHH----HH-HHHHHTC
T ss_pred HHHHCCCE-EEEEECCHHHHH---HH----H---HHH---------CC--------CCEEEHHHHH----HH-HHHHCCC
T ss_conf 97408989-999737688999---99----9---851---------66--------5144222211----47-7763057
Q ss_pred CEEEECCCC-CCCCCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCEE
Q ss_conf 499972013-6899964399989985518999439999841389963210146555687277279988767887899839
Q 001559 303 SVIVNCMYW-EQRFPRLLSTQQLQDLVRKGCPLVGISDITCDIGGSLEFVNRTTSIDSSFFRYDPLSDSYHDDLEGNGLV 381 (1053)
Q Consensus 303 diiIn~~~~-~~~~P~Lit~e~v~~l~k~~~~gsvIvDis~D~gG~iE~t~~~tt~~~P~~~~~~~~~~~~~~~~~~gV~ 381 (1053)
|++|+|++| |+++|+|||++|+++| | |||||+|+|||+|||||+ +++||+++|+|.++ ||+
T Consensus 97 DivI~aalipG~~aP~lIt~~mv~~M-k---~GSVIVDvaidqGG~~Et-s~ptt~~~p~~~~~-------------gV~ 158 (168)
T d1pjca1 97 DLLIGAVLVPGRRAPILVPASLVEQM-R---TGSVIVDVAVDQGGCVET-LHPTSHTQPTYEVF-------------GVV 158 (168)
T ss_dssp SEEEECCCCTTSSCCCCBCHHHHTTS-C---TTCEEEETTCTTCCSBTT-CCCCCSSSCEEEET-------------TEE
T ss_pred CEEEEEEECCCCCCCEEECHHHHHHC-C---CCCEEEEEECCCCCCCCC-CCCCCCCCCEEEEC-------------CEE
T ss_conf 68998202188646744259899515-8---996899844378986546-78874049869989-------------999
Q ss_pred EEECCCHHHH
Q ss_conf 9932881058
Q 001559 382 CQAVDTLPTE 391 (1053)
Q Consensus 382 i~~vdnLPs~ 391 (1053)
|||++|+|+.
T Consensus 159 ~y~v~N~Pga 168 (168)
T d1pjca1 159 HYGVPNMPGA 168 (168)
T ss_dssp EECCSCGGGG
T ss_pred EEECCCCCCC
T ss_conf 9961899998
|
| >d1pjca2 c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: L-alanine dehydrogenase-like domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=100.00 E-value=1.6e-34 Score=239.79 Aligned_cols=173 Identities=17% Similarity=0.162 Sum_probs=147.7
Q ss_pred EEEEEEECCCCCCCCCEECCHHHHHHHHHCCCCCCCEEEEEECCCC--CCCCCCHHHHHCCCEECCCC---CCCCEEEEE
Q ss_conf 0999960049999731005957899998639999640599981899--99899846763894983588---767779951
Q 001559 7 GVVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPST--KRIHHDVLYEDVGCQISEDL---SECGLVLGI 81 (1053)
Q Consensus 7 ~~IGi~~E~~~~~ErRv~ltP~~v~~L~~~G~~~~~~~~V~VE~~~--~~~F~D~~Y~~aGA~I~~~~---~~adiIl~V 81 (1053)
|.|||+||++ ++|+||+|||++|++|+++| ++|+||+|+ .++|+|++|+++||+|+++. ..||+|++|
T Consensus 1 M~IGvpkE~~-~~E~RValtP~~vkkl~~~G------~~V~VE~gaG~~a~fsD~~Y~~aGa~i~~~~~~~~~~diilkv 73 (193)
T d1pjca2 1 MEIGVPKEIK-NQEFRVGLSPSSVRTLVEAG------HTVFIETQAGIGAGFADQDYVQAGAQVVPSAKDAWSREMVVKV 73 (193)
T ss_dssp CEEEECCCCS-TTCCCCSCCHHHHHHHHTTT------CEEEEETTTTGGGTCCHHHHHHHTCEEESSHHHHHTSSEEECS
T ss_pred CEEEEECCCC-CCCCEECCCHHHHHHHHHCC------CEEEEECCCCCCCCCCHHHHHHHCCEEEECCCCCCCCCEEEEE
T ss_conf 9799924899-99857434899999999789------9999973851255988899875201353023322444268996
Q ss_pred CCCCCCCC---CCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCC-CCCC-CCHHHHHHHHHHHHHHHHHHH
Q ss_conf 59992355---799749997355333479999999999759929980243387-8865-341778999999999999852
Q 001559 82 KQPKLEMI---LPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYELIVGD-NGRR-LLAFGKFAGRAGMIDFLHGLG 156 (1053)
Q Consensus 82 Kep~~~~l---~~~~t~i~fsh~~k~q~~n~~ll~~ll~k~itlid~E~i~~~-~~~r-l~~fg~~AG~ag~~~~l~~lg 156 (1053)
++|+.+|+ .+++++++|.|++ .|.++++.+.++++|+|+||+|||+ +.|+ |++|+++|||++++.+.+.+.
T Consensus 74 ~~p~~~e~~~lk~~~~li~~l~p~----~~~ell~~l~~~~it~~s~E~ipr~srsmd~Lss~a~iag~~a~~~aa~~~~ 149 (193)
T d1pjca2 74 KEPLPAEYDLMQKDQLLFTYLHLA----AARELTEQLMRVGLTAIAYETVELPNRSLPLLTPMSIIVPWTATQALNNSTL 149 (193)
T ss_dssp SCCCGGGGGGCCTTCEEEECCCGG----GCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHHHHHCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCEEEEECCCC----CCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEHHHHHHHHH
T ss_conf 368899998652086699954754----4467799999769879982402166998786636433675450887764427
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHC--CCCEECC
Q ss_conf 75430489887544551000121999999997403222315999887884999985521289899999629--9925247
Q 001559 157 QRYLSLGYSTPFLSLGASYMYSSLAAAKAAVISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQEIFKLL--PHTFVEP 234 (1053)
Q Consensus 157 ~~~l~~g~~tpf~~~~~~~~~~~~~~~~~a~~~~g~~i~~~g~p~~i~p~~v~i~G~G~vg~gA~~~~~~L--ga~~V~~ 234 (1053)
.+ ++|.|++|+||+..++.| |+. |..
T Consensus 150 ~~---------------------------------------------------v~~~~~~G~~ai~~a~~L~~Ga~-V~~ 177 (193)
T d1pjca2 150 PY---------------------------------------------------VVKLANQGLKALETDDALAKGLN-VQA 177 (193)
T ss_dssp HH---------------------------------------------------HHHHHHHGGGGGGTCHHHHHHEE-EET
T ss_pred HH---------------------------------------------------HHHHHHHHHHHHHHCHHHHCCCE-EEC
T ss_conf 88---------------------------------------------------99989999988655868657855-878
Q ss_pred CCCH-HHHH
Q ss_conf 9913-4320
Q 001559 235 SRLP-ELFG 242 (1053)
Q Consensus 235 ~dl~-~~~~ 242 (1053)
.|++ +.++
T Consensus 178 ~~v~~~av~ 186 (193)
T d1pjca2 178 HRLVHPAVQ 186 (193)
T ss_dssp TEECCHHHH
T ss_pred CEEECHHHH
T ss_conf 865528899
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=99.98 E-value=8.9e-34 Score=234.85 Aligned_cols=181 Identities=14% Similarity=0.136 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHCCCCCCCCCCEEEEEECCCHHHHHHHH
Q ss_conf 99999999999852754304898875445510001219999999974032223159998878849999855212898999
Q 001559 143 AGRAGMIDFLHGLGQRYLSLGYSTPFLSLGASYMYSSLAAAKAAVISVGEEISTLGLPSGICPLVFIFTGSGNVSLGAQE 222 (1053)
Q Consensus 143 AG~ag~~~~l~~lg~~~l~~g~~tpf~~~~~~~~~~~~~~~~~a~~~~g~~i~~~g~p~~i~p~~v~i~G~G~vg~gA~~ 222 (1053)
|||++++.+++.|++.+.+ + ..+.+ +++|++++|+|+|+||++|++
T Consensus 1 AGy~av~~aa~~l~k~~~~---------------------l------------~~~~g-~V~pa~VvViGaGvaG~~Aa~ 46 (183)
T d1l7da1 1 AGYRAVIDGAYEFARAFPM---------------------M------------MTAAG-TVPPARVLVFGVGVAGLQAIA 46 (183)
T ss_dssp HHHHHHHHHHHHCSSCSSC---------------------E------------EETTE-EECCCEEEEECCSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCC---------------------C------------CCCCC-CCCCCEEEEECCCHHHHHHHH
T ss_conf 9488999999985434487---------------------2------------40568-857728999858689999999
Q ss_pred HHHHCCCCEECCCCCHHHHH-CCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC
Q ss_conf 99629992524799134320-01345799865410787445221110002499987551012239567672024210597
Q 001559 223 IFKLLPHTFVEPSRLPELFG-KAKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADYYAHPEHYNPVFHKKIAPY 301 (1053)
Q Consensus 223 ~~~~Lga~~V~~~dl~~~~~-~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~y~~~f~~~~~~~ 301 (1053)
++++|||. |++.|++.... +.++ .+.+. .-...... +..+..++|+++...+.-+.+...+ .+.++.
T Consensus 47 ~A~~lGA~-V~v~D~~~~~~~~l~~---l~~~~----i~~~~~~~---~~~~~~~gyA~~~s~~~~~~~~~~l-~~~l~~ 114 (183)
T d1l7da1 47 TAKRLGAV-VMATDVRAATKEQVES---LGGKF----ITVDDEAM---KTAETAGGYAKEMGEEFRKKQAEAV-LKELVK 114 (183)
T ss_dssp HHHHTTCE-EEEECSCSTTHHHHHH---TTCEE----CCC--------------------------CCHHHHH-HHHHTT
T ss_pred HHHHCCCE-EEEEECCHHHHHHHHH---HHCCE----EEEECCCC---CCCCCCCCCHHHCCHHHHHHHHHHH-HHHHHH
T ss_conf 99986998-9998504788999998---60535----99732453---3210036521221799999889999-999986
Q ss_pred CCEEEECCCC-CCCCCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCE
Q ss_conf 9499972013-689996439998998551899943999984138996321014655568727727998876788789983
Q 001559 302 ASVIVNCMYW-EQRFPRLLSTQQLQDLVRKGCPLVGISDITCDIGGSLEFVNRTTSIDSSFFRYDPLSDSYHDDLEGNGL 380 (1053)
Q Consensus 302 ~diiIn~~~~-~~~~P~Lit~e~v~~l~k~~~~gsvIvDis~D~gG~iE~t~~~tt~~~P~~~~~~~~~~~~~~~~~~gV 380 (1053)
+|++|++++| |+++|+|||++|++.| | |||||+|+|+|+|||||+| ..+|+|+.+ ||
T Consensus 115 aDlVI~talipG~~aP~lit~~mv~~M-k---~GSVIVDvaidqGGn~Ets-----~~~~~~~~~-------------gV 172 (183)
T d1l7da1 115 TDIAITTALIPGKPAPVLITEEMVTKM-K---PGSVIIDLAVEAGGNCPLS-----EPGKIVVKH-------------GV 172 (183)
T ss_dssp CSEEEECCCCTTSCCCCCSCHHHHTTS-C---TTCEEEETTGGGTCSSTTC-----CTTCEEEET-------------TE
T ss_pred HHHHEEEEECCCCCCCEEEHHHHHHHC-C---CCCEEEEEEECCCCCCCCC-----CCCCEEEEC-------------CE
T ss_conf 233201002378654421058999735-8---9948999864379960457-----689889989-------------99
Q ss_pred EEEECCCHHHH
Q ss_conf 99932881058
Q 001559 381 VCQAVDTLPTE 391 (1053)
Q Consensus 381 ~i~~vdnLPs~ 391 (1053)
+|||+.|+|++
T Consensus 173 ~~~gv~NiPsr 183 (183)
T d1l7da1 173 KIVGHTNVPSR 183 (183)
T ss_dssp EEECCSSGGGG
T ss_pred EEEEECCCCCC
T ss_conf 99961899998
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.59 E-value=1.6e-13 Score=102.45 Aligned_cols=131 Identities=37% Similarity=0.583 Sum_probs=116.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHHH
Q ss_conf 99499993743069999999937999843222233344367786279999889888999986199962899127997789
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 574 ~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
.++|+|+|+|.+|+++|++|++.| + +|+|+||+.++++++++.++.......+..+...+
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g-~-------------------~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~ 61 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSG-I-------------------KVTVACRTLESAKKLSAGVQHSTPISLDVNDDAAL 61 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTT-C-------------------EEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-C-------------------EEEEEECCHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 987999878799999999998497-9-------------------79999897477799985155422000122102436
Q ss_pred HHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHCCCEEEECCCCCHHHHHHH
Q ss_conf 97501660999448852117999998870790999513675699999999975986980688982478999
Q 001559 654 CKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGEMGLDPGIDHMM 724 (1053)
Q Consensus 654 ~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~ii~g~G~dPGi~~ml 724 (1053)
.+.+...|++++++|...+..+...|.+.+++++|+++.++.+..+++.++.++..++..++.++....+.
T Consensus 62 ~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (182)
T d1e5qa1 62 DAEVAKHDLVISLIPYTFHATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGITVMNEIGYSAMAKLVG 132 (182)
T ss_dssp HHHHTTSSEEEECSCGGGHHHHHHHHHHHTCEEECSSCCCHHHHHTHHHHHHTTCEEECSCBCCHHHHHHH
T ss_pred HHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHCCCCCEEEHHHHCCHHHHHHC
T ss_conf 76641023147622412456799998741651520534758899998874546413211320220466634
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=2.3e-15 Score=114.42 Aligned_cols=137 Identities=18% Similarity=0.213 Sum_probs=104.9
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCC-EEEEECCCC
Q ss_conf 8789949999374306999999993799984322223334436778627999988988899998619996-289912799
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNA-EAVQLDVSD 649 (1053)
Q Consensus 571 ~~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~-~~~~~d~~d 649 (1053)
..+.++|+|+|+|+++++++..|.+.+ . ++.|++|+.++++++++.+.+. .....+.
T Consensus 15 ~~~~k~vlIlGaGGaarai~~al~~~g-~-------------------~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~-- 72 (170)
T d1nyta1 15 IRPGLRILLIGAGGASRGVLLPLLSLD-C-------------------AVTITNRTVSRAEELAKLFAHTGSIQALSM-- 72 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-C-------------------EEEEECSSHHHHHHHHHHTGGGSSEEECCS--
T ss_pred CCCCCEEEEECCCHHHHHHHHHHCCCC-E-------------------EEEECCCHHHHHHHHHHHHHHCCCCCCCCC--
T ss_conf 978998999897589899999861552-3-------------------797313217789999999864033422221--
Q ss_pred HHHHHHHHCCCCEEEECCCCCCCH---HHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHCCCE-EEECCCCCHHHHHHHH
Q ss_conf 778997501660999448852117---999998870790999513675699999999975986-9806889824789999
Q 001559 650 HKSLCKCISQVEIVISLLPASCHV---MVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGIT-ILGEMGLDPGIDHMMA 725 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~~~~~---~v~~a~i~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~-ii~g~G~dPGi~~mla 725 (1053)
+.. ...++|+||||||.+|.. +.....+..+..++|+.|.|.+|..+ +.|++.|+. +++|.+ ||.
T Consensus 73 -~~~--~~~~~dliIN~Tp~G~~~~~~~~~~~~~~~~~~v~D~vY~P~~T~ll-~~A~~~G~~~~i~Gl~-------MLi 141 (170)
T d1nyta1 73 -DEL--EGHEFDLIINATSSGISGDIPAIPSSLIHPGIYCYDMFYQKGKTPFL-AWCEQRGSKRNADGLG-------MLV 141 (170)
T ss_dssp -GGG--TTCCCSEEEECCSCGGGTCCCCCCGGGCCTTCEEEESCCCSSCCHHH-HHHHHTTCCEEECTHH-------HHH
T ss_pred -CCC--CCCCCCEEECCCCCCCCCCCCCCCHHHHCCCCEEEEEECCCCCCHHH-HHHHHCCCCCCCCCHH-------HHH
T ss_conf -012--23221445313456755578778477735673799841288889999-9999859970128799-------999
Q ss_pred HHHHHHHHHCCCCEEEEEEECCCCC
Q ss_conf 9999986001484379985106988
Q 001559 726 MKMINHAHVRKGKIKSFTSYCGGLP 750 (1053)
Q Consensus 726 ~~~~~~~~~~~~~v~sf~~~~Gg~p 750 (1053)
.|+ +.+|++|+|..|
T Consensus 142 ~Qa----------~~~f~lwtG~~~ 156 (170)
T d1nyta1 142 AQA----------AHAFLLWHGVLP 156 (170)
T ss_dssp HHH----------HHHHHHHHSSCC
T ss_pred HHH----------HHHHHHHHCCCC
T ss_conf 999----------999999958999
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=99.54 E-value=2.3e-15 Score=114.49 Aligned_cols=131 Identities=11% Similarity=0.177 Sum_probs=103.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHH
Q ss_conf 89949999374306999999993799984322223334436778627999988988899998619996289912799778
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 573 ~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
+.++|+|||+|+++++++..|.+.+ + .++.|++|+.++++.+++.++. . ..+..+
T Consensus 16 ~~~~vlIlGaGGaarai~~aL~~~g-~------------------~~I~I~nR~~~ka~~L~~~~~~-~--~~~~~~--- 70 (167)
T d1npya1 16 KNAKVIVHGSGGMAKAVVAAFKNSG-F------------------EKLKIYARNVKTGQYLAALYGY-A--YINSLE--- 70 (167)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTT-C------------------CCEEEECSCHHHHHHHHHHHTC-E--EESCCT---
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-C------------------CEEEEECCCHHHHHHHHHHHHH-H--HHHCCC---
T ss_conf 8996999898789999999999779-9------------------8899963327888878876432-2--322022---
Q ss_pred HHHHHCCCCEEEECCCCCCCH-------HHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHH
Q ss_conf 997501660999448852117-------9999988707909995136756999999999759869806889824789999
Q 001559 653 LCKCISQVEIVISLLPASCHV-------MVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGEMGLDPGIDHMMA 725 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~~~~-------~v~~a~i~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~ii~g~G~dPGi~~mla 725 (1053)
..++|+||||||.+|.+ ++....+..+..++|+.|.|.+|..+ +.|+++|+.+++|.+ |+.
T Consensus 71 ----~~~~DliINaTpiGm~~~~~~~~l~~~~~~~~~~~~v~D~vY~P~~T~ll-~~A~~~G~~~i~Gl~-------Mli 138 (167)
T d1npya1 71 ----NQQADILVNVTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVAMPVETPFI-RYAQARGKQTISGAA-------VIV 138 (167)
T ss_dssp ----TCCCSEEEECSSTTCTTSTTTTSCSSCHHHHHHCSEEEECCCSSSSCHHH-HHHHHTTCEEECHHH-------HHH
T ss_pred ----CCCHHHHEECCCCCCCCCCCCCCCCCCHHHCCCCCEEEEEEECCCCCHHH-HHHHHCCCEEEECHH-------HHH
T ss_conf ----22102201103357755655565426286628765688876336778999-999987896987799-------999
Q ss_pred HHHHHHHHHCCCCEEEEEEECCCCC
Q ss_conf 9999986001484379985106988
Q 001559 726 MKMINHAHVRKGKIKSFTSYCGGLP 750 (1053)
Q Consensus 726 ~~~~~~~~~~~~~v~sf~~~~Gg~p 750 (1053)
.|+ +.+|++|+|..|
T Consensus 139 ~Qa----------~~~f~lwtg~~~ 153 (167)
T d1npya1 139 LQA----------VEQFELYTHQRP 153 (167)
T ss_dssp HHH----------HHHHHHHHSCCC
T ss_pred HHH----------HHHHHHHHCCCC
T ss_conf 999----------999999958999
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=2.9e-15 Score=113.76 Aligned_cols=143 Identities=13% Similarity=0.146 Sum_probs=110.7
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHH---HHHCCC---CCEEEE
Q ss_conf 87899499993743069999999937999843222233344367786279999889888999---986199---962899
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEE---VIEGIP---NAEAVQ 644 (1053)
Q Consensus 571 ~~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~---l~~~~~---~~~~~~ 644 (1053)
..+.++|+|+|+|+++++++..|...+ + ..+.|++|+.+++++ +++.+. ...+..
T Consensus 15 ~l~~k~vlIlGaGGaarai~~al~~~g-~------------------~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~ 75 (182)
T d1vi2a1 15 DIKGKTMVLLGAGGASTAIGAQGAIEG-L------------------KEIKLFNRRDEFFDKALAFAQRVNENTDCVVTV 75 (182)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-C------------------SEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC-C------------------CEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 967998999897489999999986448-7------------------367642330677999999999987624763476
Q ss_pred ECCCCHHHHHHHHCCCCEEEECCCCCCCH------HHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHCCCEEEECCCCCH
Q ss_conf 12799778997501660999448852117------999998870790999513675699999999975986980688982
Q 001559 645 LDVSDHKSLCKCISQVEIVISLLPASCHV------MVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGEMGLDP 718 (1053)
Q Consensus 645 ~d~~d~~~l~~~i~~~DvVI~~~p~~~~~------~v~~a~i~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~ii~g~G~dP 718 (1053)
.+..+.+.+.+.+.++|+||||||.+|.. +.....++.+..++|++|.|.+|..+ +.|++.|+.+++|.+
T Consensus 76 ~~~~~~~~~~~~~~~~diiIN~Tp~G~~~~~~~~~~~~~~~~~~~~~v~Di~Y~p~~T~ll-~~a~~~g~~~i~Gl~--- 151 (182)
T d1vi2a1 76 TDLADQQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHMTKLL-QQAQQAGCKTIDGYG--- 151 (182)
T ss_dssp EETTCHHHHHHHHHTCSEEEECSSTTSTTSCSCCSCCCGGGSCTTCEEEECCCSSSSCHHH-HHHHTTTCEEECHHH---
T ss_pred EECCCCCCHHHHHCCCCEECCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCHHH-HHHHHCCCEEECCHH---
T ss_conf 5201000035430433100245677631122124566777641122467762486102999-999988494855499---
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
Q ss_conf 47899999999986001484379985106988
Q 001559 719 GIDHMMAMKMINHAHVRKGKIKSFTSYCGGLP 750 (1053)
Q Consensus 719 Gi~~mla~~~~~~~~~~~~~v~sf~~~~Gg~p 750 (1053)
|+..|++ .+|++|+|..+
T Consensus 152 ----Mli~Qa~----------~~f~iwtg~~~ 169 (182)
T d1vi2a1 152 ----MLLWQGA----------EQFTLWTGKDF 169 (182)
T ss_dssp ----HHHHHHH----------HHHHHHHSSCC
T ss_pred ----HHHHHHH----------HHHHHHHCCCC
T ss_conf ----9999999----------99999948999
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=99.42 E-value=4.7e-14 Score=105.89 Aligned_cols=137 Identities=16% Similarity=0.254 Sum_probs=101.7
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCC-CEEEEECCCC
Q ss_conf 878994999937430699999999379998432222333443677862799998898889999861999-6289912799
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPN-AEAVQLDVSD 649 (1053)
Q Consensus 571 ~~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~-~~~~~~d~~d 649 (1053)
..+.++|+|+|+|+++++++..|.+.+ .++.|++|+.++++.+++.+.. ........
T Consensus 15 ~~~~k~vlIlGaGGaarai~~aL~~~~--------------------~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~-- 72 (171)
T d1p77a1 15 LRPNQHVLILGAGGATKGVLLPLLQAQ--------------------QNIVLANRTFSKTKELAERFQPYGNIQAVSM-- 72 (171)
T ss_dssp CCTTCEEEEECCSHHHHTTHHHHHHTT--------------------CEEEEEESSHHHHHHHHHHHGGGSCEEEEEG--
T ss_pred CCCCCEEEEECCCHHHHHHHHHHCCCC--------------------CEEEECCCHHHHHHHHHHHHHHCCCCCHHHH--
T ss_conf 878997999897399999999870467--------------------4565236337889999999853355420111--
Q ss_pred HHHHHHHHCCCCEEEECCCCCCCHHH---HHHHHHHCCEEEEEECC-CHHHHHHHHHHHHCCC-EEEECCCCCHHHHHHH
Q ss_conf 77899750166099944885211799---99988707909995136-7569999999997598-6980688982478999
Q 001559 650 HKSLCKCISQVEIVISLLPASCHVMV---ANACIEFKKHLVTASYI-DDSMSKLDEKAKGAGI-TILGEMGLDPGIDHMM 724 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~~~~~~v---~~a~i~~g~~~vD~sy~-~~~~~~L~~~Ak~~Gv-~ii~g~G~dPGi~~ml 724 (1053)
. ...+.++|++|||||.+|.... ....+..+..++|+.|. +.+|..+ ..|+++|+ .+++|.+ |+
T Consensus 73 -~--~~~~~~~diiIN~tp~g~~~~~~~~~~~~~~~~~~~~D~vy~~p~~T~~l-~~A~~~g~~~v~~Gl~-------Ml 141 (171)
T d1p77a1 73 -D--SIPLQTYDLVINATSAGLSGGTASVDAEILKLGSAFYDMQYAKGTDTPFI-ALCKSLGLTNVSDGFG-------ML 141 (171)
T ss_dssp -G--GCCCSCCSEEEECCCC-------CCCHHHHHHCSCEEESCCCTTSCCHHH-HHHHHTTCCCEECSHH-------HH
T ss_pred -C--CCCCCCCCEEEECCCCCCCCCCCCHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHCCCCCCCCCHH-------HH
T ss_conf -0--14322114454225666654422023443100103555420585457999-9999869981628499-------99
Q ss_pred HHHHHHHHHHCCCCEEEEEEECCCCC
Q ss_conf 99999986001484379985106988
Q 001559 725 AMKMINHAHVRKGKIKSFTSYCGGLP 750 (1053)
Q Consensus 725 a~~~~~~~~~~~~~v~sf~~~~Gg~p 750 (1053)
..|+ +.+|++|+|..|
T Consensus 142 ~~Qa----------~~~f~iwtg~~~ 157 (171)
T d1p77a1 142 VAQA----------AHSFHLWRGVMP 157 (171)
T ss_dssp HHHH----------HHHHHHHHSCCC
T ss_pred HHHH----------HHHHHHHHCCCC
T ss_conf 9999----------999999978999
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.35 E-value=7.1e-15 Score=111.22 Aligned_cols=136 Identities=21% Similarity=0.270 Sum_probs=100.8
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCC------CEEEE
Q ss_conf 878994999937430699999999379998432222333443677862799998898889999861999------62899
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPN------AEAVQ 644 (1053)
Q Consensus 571 ~~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~------~~~~~ 644 (1053)
..+.++|+|+|+|+++++++..|...+ ++.|++|+.++++++++.+.. ...+.
T Consensus 15 ~~~~k~vlIlGaGG~arai~~aL~~~~---------------------~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~ 73 (177)
T d1nvta1 15 RVKDKNIVIYGAGGAARAVAFELAKDN---------------------NIIIANRTVEKAEALAKEIAEKLNKKFGEEVK 73 (177)
T ss_dssp CCCSCEEEEECCSHHHHHHHHHHTSSS---------------------EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHCCCC---------------------CEEEEHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_conf 868998999897599999999870453---------------------03420010437999888888751224444432
Q ss_pred ECCCCHHHHHHHHCCCCEEEECCCCCCCHH------HHHHHHHHCCEEEEEECCCHHHHHHHHHHHHCCCEEEECCCCCH
Q ss_conf 127997789975016609994488521179------99998870790999513675699999999975986980688982
Q 001559 645 LDVSDHKSLCKCISQVEIVISLLPASCHVM------VANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGEMGLDP 718 (1053)
Q Consensus 645 ~d~~d~~~l~~~i~~~DvVI~~~p~~~~~~------v~~a~i~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~ii~g~G~dP 718 (1053)
. ..+...+..+|++|||+|.++.+. +....+..+..++|+.|.|.++..+ +.|+++|..+++|.+
T Consensus 74 ~-----~~~~~~~~~~dliIn~tp~g~~~~~~~~~~~~~~~~~~~~~v~D~~y~p~~T~l~-~~a~~~G~~~i~Gl~--- 144 (177)
T d1nvta1 74 F-----SGLDVDLDGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDLIYNPLETVLL-KEAKKVNAKTINGLG--- 144 (177)
T ss_dssp E-----ECTTCCCTTCCEEEECSCTTCTTCCSSCCSSCSTTCCSSSEEEECCCSSSSCHHH-HHHHTTTCEEECTHH---
T ss_pred H-----HHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEEECCCCHHHHHH-HHHHHCCCCCCCCHH---
T ss_conf 3-----2355401113342257741236655556403443058664011002781768999-999987995217789---
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
Q ss_conf 47899999999986001484379985106988
Q 001559 719 GIDHMMAMKMINHAHVRKGKIKSFTSYCGGLP 750 (1053)
Q Consensus 719 Gi~~mla~~~~~~~~~~~~~v~sf~~~~Gg~p 750 (1053)
||..|+ +.+|++|+|..|
T Consensus 145 ----MLv~Qa----------~~qf~lwtg~~~ 162 (177)
T d1nvta1 145 ----MLIYQG----------AVAFKIWTGVEP 162 (177)
T ss_dssp ----HHHHHH----------HHHHHHHHSSCC
T ss_pred ----HHHHHH----------HHHHHHHHCCCC
T ss_conf ----999999----------999999978999
|
| >d1vi2a2 c.58.1.5 (A:5-106) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Aminoacid dehydrogenase-like, N-terminal domain superfamily: Aminoacid dehydrogenase-like, N-terminal domain family: Shikimate dehydrogenase-like domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=3.1e-11 Score=87.45 Aligned_cols=82 Identities=21% Similarity=0.207 Sum_probs=74.2
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCC--------CCCCCCCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCC
Q ss_conf 46655600002456789871992999977837898--------6764233333778821123633024500211478544
Q 001559 474 SGHLFDQFLINEALDIIEAAGGSFHLVKCQVGQST--------EALSFSELEVGADDSAVLDQIIDSLTSLANASENNRD 545 (1053)
Q Consensus 474 ~GHl~d~~~~n~Aldv~~fa~g~v~lvef~V~~~s--------~~~sl~~lnvt~p~k~~l~~~id~~~~~a~~~g~~n~ 545 (1053)
=.||+||.+||.+ ++..+.++.|..+.|.+++ ....+.++|||+|||+.+++++|++++.|+.+||+||
T Consensus 13 i~hS~SP~ihn~~---f~~~gi~~~Y~~~~v~~~~l~~~~~~l~~~~~~G~nVT~P~K~~~~~~~d~~~~~a~~igAvNt 89 (102)
T d1vi2a2 13 IRHSLSPEMQNKA---LEKAGLPFTYMAFEVDNDSFPGAIEGLKALKMRGTGVSMPNKQLACEYVDELTPAAKLVGAINT 89 (102)
T ss_dssp CTTCSHHHHHHHH---HHHTTCSEEEEEEECCTTTHHHHHHHHHHTTCCEEEECTTSTTGGGGGCSEECHHHHHHTCCSE
T ss_pred CCCCCCHHHHHHH---HHHCCCCCEEEEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCEEE
T ss_conf 3655599999999---9984998097657308167899998766511312320158899888760657989996394799
Q ss_pred CCCCEEECCEEEEEEE
Q ss_conf 5332000112221110
Q 001559 546 QISGINRISLRIGKVQ 561 (1053)
Q Consensus 546 ~~~~~~~~~~~~G~~~ 561 (1053)
.+++.++++|+||
T Consensus 90 ---i~~~~g~l~G~NT 102 (102)
T d1vi2a2 90 ---IVNDDGYLRGYNT 102 (102)
T ss_dssp ---EEEETTEEEEECH
T ss_pred ---EEEECCEEEEECC
T ss_conf ---9998999998679
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=99.06 E-value=1.6e-10 Score=82.82 Aligned_cols=123 Identities=16% Similarity=0.126 Sum_probs=92.6
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHHH
Q ss_conf 99499993743069999999937999843222233344367786279999889888999986199962899127997789
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 574 ~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
+.||.|+|+|.+|+..+..|.+.+++ .-+.|++++.++. ....... ...+
T Consensus 3 kirvgiiG~G~ig~~~~~~l~~~~~~------------------elvav~~~~~~~~-------~~~~~~~-----~~~~ 52 (170)
T d1f06a1 3 NIRVAIVGYGNLGRSVEKLIAKQPDM------------------DLVGIFSRRATLD-------TKTPVFD-----VADV 52 (170)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTCSSE------------------EEEEEEESSSCCS-------SSSCEEE-----GGGG
T ss_pred CCEEEEECCHHHHHHHHHHHHHCCCC------------------EEEEEEECCCCCC-------CCCCCCC-----CHHH
T ss_conf 55699989709999999999858996------------------8999970143433-------2322111-----0246
Q ss_pred HHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEEC----CCHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHH
Q ss_conf 97501660999448852117999998870790999513----67569999999997598698068898247899999
Q 001559 654 CKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASY----IDDSMSKLDEKAKGAGITILGEMGLDPGIDHMMAM 726 (1053)
Q Consensus 654 ~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~sy----~~~~~~~L~~~Ak~~Gv~ii~g~G~dPGi~~mla~ 726 (1053)
..+..+.|+|+.|+|...|.+++..|+++|+|+++..- .++....|++.|++.|..++.+.|++||+.++...
T Consensus 53 ~~~~~~~D~Vvi~tp~~~h~~~a~~aL~aG~~vv~~~~~~~~~~~~~~~l~~~A~~~~~~~~i~~g~~~~~~~~~~~ 129 (170)
T d1f06a1 53 DKHADDVDVLFLCMGSATDIPEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAGNVALVSTGRNPDFTASSQI 129 (170)
T ss_dssp GGTTTTCSEEEECSCTTTHHHHHHHHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHTCEEECSCSCHHHHHHHHHH
T ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEECEECCCHHHHHHH
T ss_conf 66435665589947872369999999978980998337655689999999999874695499954011334678898
|
| >d1nyta2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Aminoacid dehydrogenase-like, N-terminal domain superfamily: Aminoacid dehydrogenase-like, N-terminal domain family: Shikimate dehydrogenase-like domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=99.04 E-value=3.1e-11 Score=87.40 Aligned_cols=82 Identities=10% Similarity=-0.089 Sum_probs=72.3
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCC--------CCCCCCCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCC
Q ss_conf 46655600002456789871992999977837898--------6764233333778821123633024500211478544
Q 001559 474 SGHLFDQFLINEALDIIEAAGGSFHLVKCQVGQST--------EALSFSELEVGADDSAVLDQIIDSLTSLANASENNRD 545 (1053)
Q Consensus 474 ~GHl~d~~~~n~Aldv~~fa~g~v~lvef~V~~~s--------~~~sl~~lnvt~p~k~~l~~~id~~~~~a~~~g~~n~ 545 (1053)
=+||+||.+||.+ ++..+.+..|..|.|.+++ ....+.++|||+|||+.+++++|++++.|+.+||+||
T Consensus 11 i~hS~SP~ihn~~---~~~~gi~~~y~~~~v~~~~~~~~~~~l~~~~~~G~nVT~P~K~~~~~~~d~~~~~a~~igAvNt 87 (101)
T d1nyta2 11 IAHSKSPFIHQQF---AQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVTVPFKEEAFARADELTERAALAGAVNT 87 (101)
T ss_dssp CTTCSHHHHHHHH---HHHHTCCCCEEEEECCTTCHHHHHHHHHHTTCCEEEECTTCHHHHHHHCSEECHHHHHHTCCSE
T ss_pred CCCCCCHHHHHHH---HHHCCCCCHHHHHCCCHHHHHHHHHHHHHCCCHHHEEEHHHHHHHHHHHCCCCHHHHHHCCEEE
T ss_conf 4554498999999---9994995034131277476999999865400032012047899999986338757777092799
Q ss_pred CCCCE-EECCEEEEEEE
Q ss_conf 53320-00112221110
Q 001559 546 QISGI-NRISLRIGKVQ 561 (1053)
Q Consensus 546 ~~~~~-~~~~~~~G~~~ 561 (1053)
++ ++.++++|+||
T Consensus 88 ---i~~~~~g~l~G~NT 101 (101)
T d1nyta2 88 ---LMRLEDGRLLGDNT 101 (101)
T ss_dssp ---EEECTTSCEEEECC
T ss_pred ---EEECCCCEEEEECC
T ss_conf ---99888996997589
|
| >d1p77a2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Aminoacid dehydrogenase-like, N-terminal domain superfamily: Aminoacid dehydrogenase-like, N-terminal domain family: Shikimate dehydrogenase-like domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=99.02 E-value=6.8e-11 Score=85.21 Aligned_cols=81 Identities=6% Similarity=-0.099 Sum_probs=72.4
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCC--------CCCCCCCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCC
Q ss_conf 6655600002456789871992999977837898--------67642333337788211236330245002114785445
Q 001559 475 GHLFDQFLINEALDIIEAAGGSFHLVKCQVGQST--------EALSFSELEVGADDSAVLDQIIDSLTSLANASENNRDQ 546 (1053)
Q Consensus 475 GHl~d~~~~n~Aldv~~fa~g~v~lvef~V~~~s--------~~~sl~~lnvt~p~k~~l~~~id~~~~~a~~~g~~n~~ 546 (1053)
.||+||.+||.+ +...+.+..|..|.+++++ ....+.++|||+|||+.+++++|++++.|+.+||+||
T Consensus 12 ~hS~SP~ihn~~---~~~~gi~~~y~~~~v~~~~~~~~~~~l~~~~~~G~nVT~P~K~~~~~~~d~~~~~a~~igAvNt- 87 (101)
T d1p77a2 12 AQSKSPLIQNKL---AAQTHQTMEYIAKLGDLDAFEQQLLAFFEEGAKGCNITSPFKERAYQLADEYSQRAKLAEACNT- 87 (101)
T ss_dssp TTCCHHHHHHHH---HHHTTCCEEEEEEECCTTTHHHHHHHHHHTTCCEEEECTTCHHHHHHHCSEECHHHHHHTCCSE-
T ss_pred CCCCCHHHHHHH---HHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHCCCCHHHHHCCEEEE-
T ss_conf 544599999999---9985998320235488789999999877503543014367799999981327988897090699-
Q ss_pred CCCE-EECCEEEEEEE
Q ss_conf 3320-00112221110
Q 001559 547 ISGI-NRISLRIGKVQ 561 (1053)
Q Consensus 547 ~~~~-~~~~~~~G~~~ 561 (1053)
.+ ++.++++|+||
T Consensus 88 --i~~~~~g~l~G~NT 101 (101)
T d1p77a2 88 --LKKLDDGKLYADNT 101 (101)
T ss_dssp --EEECTTSCEEEECC
T ss_pred --EEECCCCEEEEECC
T ss_conf --99888997997659
|
| >d1nvta2 c.58.1.5 (A:1-110) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Aminoacid dehydrogenase-like, N-terminal domain superfamily: Aminoacid dehydrogenase-like, N-terminal domain family: Shikimate dehydrogenase-like domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.91 E-value=3.6e-10 Score=80.49 Aligned_cols=82 Identities=17% Similarity=0.131 Sum_probs=72.7
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCC--------CCCCCCCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCC
Q ss_conf 46655600002456789871992999977837898--------6764233333778821123633024500211478544
Q 001559 474 SGHLFDQFLINEALDIIEAAGGSFHLVKCQVGQST--------EALSFSELEVGADDSAVLDQIIDSLTSLANASENNRD 545 (1053)
Q Consensus 474 ~GHl~d~~~~n~Aldv~~fa~g~v~lvef~V~~~s--------~~~sl~~lnvt~p~k~~l~~~id~~~~~a~~~g~~n~ 545 (1053)
=+|++||.+||.+ +...+.++.|+.+.+.+++ ....+.++|||+|||+.++.++|++++.|+.+|++||
T Consensus 21 i~~S~SP~ihn~~---~~~~gi~~~y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~s~~a~~igavNt 97 (110)
T d1nvta2 21 VEHSFSPIMHNAA---FKDKGLNYVYVAFDVLPENLKYVIDGAKALGIVGFNVTIPHKIEIMKYLDEIDKDAQLIGAVNT 97 (110)
T ss_dssp CTTCSHHHHHHHH---HHHTTCCEEEEEEECCGGGGGGHHHHHHHHTCCEEEECTTSTTGGGGGCSEECHHHHHHTCCCE
T ss_pred CCCCCCHHHHHHH---HHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCHHHEEHHHHHHHHHHHCCCCHHHHHHCCEEE
T ss_conf 2555599999999---9986986798650267778999987410367532110069999999883448988987295799
Q ss_pred CCCCEEECCEEEEEEE
Q ss_conf 5332000112221110
Q 001559 546 QISGINRISLRIGKVQ 561 (1053)
Q Consensus 546 ~~~~~~~~~~~~G~~~ 561 (1053)
...+.+++.|+||
T Consensus 98 ---i~~~~~~l~G~NT 110 (110)
T d1nvta2 98 ---IKIEDGKAIGYNT 110 (110)
T ss_dssp ---EEEETTEEEEECC
T ss_pred ---EEEECCEEEEECC
T ss_conf ---9998999998689
|
| >d1npya2 c.58.1.5 (A:1-102) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Aminoacid dehydrogenase-like, N-terminal domain superfamily: Aminoacid dehydrogenase-like, N-terminal domain family: Shikimate dehydrogenase-like domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=98.85 E-value=3.9e-10 Score=80.25 Aligned_cols=87 Identities=15% Similarity=0.053 Sum_probs=74.4
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECC-CC-----CCCCCCCCCCCCCCCCHHHHHHCCCCCCHHCCCC
Q ss_conf 15411466556000024567898719929999778378-98-----6764233333778821123633024500211478
Q 001559 469 LLVSLSGHLFDQFLINEALDIIEAAGGSFHLVKCQVGQ-ST-----EALSFSELEVGADDSAVLDQIIDSLTSLANASEN 542 (1053)
Q Consensus 469 ~~~~~~GHl~d~~~~n~Aldv~~fa~g~v~lvef~V~~-~s-----~~~sl~~lnvt~p~k~~l~~~id~~~~~a~~~g~ 542 (1053)
..+.=.-|++||.+||.+ ++..+.++.|..|.+.+ +. .+..+.++|||+|||+.+++++|++++.|+.+||
T Consensus 10 ~~i~g~P~s~SP~ihn~~---~~~~gi~~~Y~~~~v~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~s~~a~~igA 86 (102)
T d1npya2 10 MSLSGRPSNFGTTFHNYL---YDKLGLNFIYKAFTTQDIEHAIKGVRALGIRGCAVSMPFKETCMPFLDEIHPSAQAIES 86 (102)
T ss_dssp EEECSSCCSHHHHHHHHH---HHHHTCCEEEEEECCSCHHHHHHHHHHHTCCEEEECTTCTTTTGGGCSEECHHHHTTTC
T ss_pred EEECCCCCCCCHHHHHHH---HHHCCCCEEEEEEECCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCHHHHHCCC
T ss_conf 999178452799999999---99869990876670331999999874236650677554799999985227831302381
Q ss_pred CCCCCCCEEECCEEEEEEE
Q ss_conf 5445332000112221110
Q 001559 543 NRDQISGINRISLRIGKVQ 561 (1053)
Q Consensus 543 ~n~~~~~~~~~~~~~G~~~ 561 (1053)
+|| .+.+.++++|+||
T Consensus 87 vNt---i~~~~g~l~G~NT 102 (102)
T d1npya2 87 VNT---IVNDNGFLRAYNT 102 (102)
T ss_dssp CCE---EEEETTEEEEECH
T ss_pred EEE---EEEECCEEEEECC
T ss_conf 899---9988999998679
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=98.69 E-value=1.2e-07 Score=63.98 Aligned_cols=96 Identities=24% Similarity=0.327 Sum_probs=73.9
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCH
Q ss_conf 87899499993743069999999937999843222233344367786279999889888999986199962899127997
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
+.+.++|+|||+|.+|+.++++|...+ . .+++|++|+.+++++++..++ ..+. +.
T Consensus 21 ~l~~~~ilviGaG~~g~~v~~~L~~~g-~------------------~~i~v~nRt~~ka~~l~~~~~-~~~~-----~~ 75 (159)
T d1gpja2 21 SLHDKTVLVVGAGEMGKTVAKSLVDRG-V------------------RAVLVANRTYERAVELARDLG-GEAV-----RF 75 (159)
T ss_dssp CCTTCEEEEESCCHHHHHHHHHHHHHC-C------------------SEEEEECSSHHHHHHHHHHHT-CEEC-----CG
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC-C------------------CEEEEECCCHHHHHHHHHHHH-CCCC-----CC
T ss_conf 701696999879889999999999669-8------------------579997586889999888641-1434-----51
Q ss_pred HHHHHHHCCCCEEEECCCCC---CCHHHHHHHHHH---C--CEEEEEEC
Q ss_conf 78997501660999448852---117999998870---7--90999513
Q 001559 651 KSLCKCISQVEIVISLLPAS---CHVMVANACIEF---K--KHLVTASY 691 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~---~~~~v~~a~i~~---g--~~~vD~sy 691 (1053)
+++.+.+.++|+||+||+.. ......+..++. + ..++|++.
T Consensus 76 ~~~~~~l~~~Divi~atss~~~ii~~~~i~~~~~~r~~~~~~~iiDlav 124 (159)
T d1gpja2 76 DELVDHLARSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIAN 124 (159)
T ss_dssp GGHHHHHHTCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECCS
T ss_pred HHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf 4578773548999992489876412766689987202579858996047
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=98.66 E-value=9.8e-08 Score=64.53 Aligned_cols=121 Identities=15% Similarity=0.078 Sum_probs=90.0
Q ss_pred CCEEEEECCCHHHHH-HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHH
Q ss_conf 994999937430699-9999993799984322223334436778627999988988899998619996289912799778
Q 001559 574 TSSVLIIGAGRVCRP-AAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~vliiGaG~vg~~-ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
++||.|||+|.+|+. .+..+...+.+ .-+.|++++.++++++.+.+. +. .. +.
T Consensus 1 Kiri~iIG~G~~g~~~~~~~l~~~~~~------------------~i~~v~d~~~~~~~~~~~~~~-~~-----~~--~~ 54 (164)
T d1tlta1 1 KLRIGVVGLGGIAQKAWLPVLAAASDW------------------TLQGAWSPTRAKALPICESWR-IP-----YA--DS 54 (164)
T ss_dssp CEEEEEECCSTHHHHTHHHHHHSCSSE------------------EEEEEECSSCTTHHHHHHHHT-CC-----BC--SS
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCC------------------EEEEEEECHHHHHHHHHHCCC-CC-----CC--CC
T ss_conf 979999959899999999999858996------------------899999330676666542023-34-----35--53
Q ss_pred HHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEE---ECCCHHHHHHHHHHHHCCCEEEECC--CCCHHH
Q ss_conf 9975016609994488521179999988707909995---1367569999999997598698068--898247
Q 001559 653 LCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTA---SYIDDSMSKLDEKAKGAGITILGEM--GLDPGI 720 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~---sy~~~~~~~L~~~Ak~~Gv~ii~g~--G~dPGi 720 (1053)
+.+++.+.|+|+.++|...|..++..++++|+|++.- +....+...+.+.|+++|+.+..+. .+.|+.
T Consensus 55 ~~~l~~~~D~V~I~tp~~~h~~~~~~al~~gk~V~~EKPla~~~~e~~~l~~~a~~~~~~~~v~~~~r~~~~~ 127 (164)
T d1tlta1 55 LSSLAASCDAVFVHSSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTLMVGFNRRFFVGC 127 (164)
T ss_dssp HHHHHTTCSEEEECSCTTHHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEEECGGGGHHHH
T ss_pred CHHHHHHCCCCCCCCCCHHCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHH
T ss_conf 0222220121123431100012331122322001204355689999999999999829939999644338899
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=98.64 E-value=2e-07 Score=62.54 Aligned_cols=122 Identities=14% Similarity=0.173 Sum_probs=89.2
Q ss_pred CCEEEEECCCHHHHH-HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHH
Q ss_conf 994999937430699-9999993799984322223334436778627999988988899998619996289912799778
Q 001559 574 TSSVLIIGAGRVCRP-AAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~vliiGaG~vg~~-ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
.+||.|||+|.+|+. .+..|...+. .++.+++++.++++++++.++... . .+|.++
T Consensus 1 tirvgiiG~G~~~~~~~~~~l~~~~~-------------------~~~~~~d~~~~~~~~~~~~~~~~~-~---~~~~~~ 57 (167)
T d1xeaa1 1 SLKIAMIGLGDIAQKAYLPVLAQWPD-------------------IELVLCTRNPKVLGTLATRYRVSA-T---CTDYRD 57 (167)
T ss_dssp CEEEEEECCCHHHHHTHHHHHTTSTT-------------------EEEEEECSCHHHHHHHHHHTTCCC-C---CSSTTG
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCC-------------------CEEEEEECCHHHHHHHHHHCCCCC-C---CCCHHH
T ss_conf 96999996979999999999983989-------------------689999899999999997514343-2---266888
Q ss_pred HHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEE---CCCHHHHHHHHHHHHCCCEEEECC-CCCHHH
Q ss_conf 99750166099944885211799999887079099951---367569999999997598698068-898247
Q 001559 653 LCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTAS---YIDDSMSKLDEKAKGAGITILGEM-GLDPGI 720 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~s---y~~~~~~~L~~~Ak~~Gv~ii~g~-G~dPGi 720 (1053)
+.+ .+.|+|+.++|...|..++..|++.|+|++.-. ....+...|.+.+++.|+.+..+. .+.|.+
T Consensus 58 ll~--~~iD~V~I~tp~~~H~~~~~~al~~gk~V~~EKP~~~~~~e~~~l~~~a~~~~~~~~vg~~r~~~~~ 127 (167)
T d1xeaa1 58 VLQ--YGVDAVMIHAATDVHSTLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQPLYVGFNGFDAMV 127 (167)
T ss_dssp GGG--GCCSEEEECSCGGGHHHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCEEEECGTHHHHH
T ss_pred HCC--CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCHHH
T ss_conf 123--4432001333211112222111221100225787829999999999999983997999957288999
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=98.63 E-value=5.2e-07 Score=59.81 Aligned_cols=117 Identities=16% Similarity=0.129 Sum_probs=87.1
Q ss_pred CCEEEEECCCHHHHH-HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCE-EEEEECCHHHHHHHHHCCCCCEEEEECCCCHH
Q ss_conf 994999937430699-9999993799984322223334436778627-99998898889999861999628991279977
Q 001559 574 TSSVLIIGAGRVCRP-AAELLASFGSPSHQMQKTCMETDFEWQNDIR-VLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 574 ~~~vliiGaG~vg~~-ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
+.|+.|+|+|.+|+. .+..+...+.. .+ +.|++++.++++++.+.++..... .|.
T Consensus 3 kirigiIG~G~~g~~~h~~~l~~~~~~------------------~~i~~v~d~~~~~~~~~~~~~~~~~~~----~~~- 59 (181)
T d1zh8a1 3 KIRLGIVGCGIAARELHLPALKNLSHL------------------FEITAVTSRTRSHAEEFAKMVGNPAVF----DSY- 59 (181)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTTTTT------------------EEEEEEECSSHHHHHHHHHHHSSCEEE----SCH-
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCC------------------EEEEEEEECCHHHHHHHHCCCCCCCEE----EEE-
T ss_conf 767999949899999999999848997------------------589999826276665410101223203----322-
Q ss_pred HHHHHHC--CCCEEEECCCCCCCHHHHHHHHHHCCEEEEEE---CCCHHHHHHHHHHHHCCCEEEECCC
Q ss_conf 8997501--66099944885211799999887079099951---3675699999999975986980688
Q 001559 652 SLCKCIS--QVEIVISLLPASCHVMVANACIEFKKHLVTAS---YIDDSMSKLDEKAKGAGITILGEMG 715 (1053)
Q Consensus 652 ~l~~~i~--~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~s---y~~~~~~~L~~~Ak~~Gv~ii~g~G 715 (1053)
.++++ +.|+|+.++|...|..++..++++|+|++.-- ....+..+|.+.++++|+.+..+.-
T Consensus 60 --~ell~~~~id~v~I~tp~~~h~~~~~~al~~gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~~~v~~~ 126 (181)
T d1zh8a1 60 --EELLESGLVDAVDLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEKSEKTVYIAEN 126 (181)
T ss_dssp --HHHHHSSCCSEEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSCEEEECG
T ss_pred --ECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEE
T ss_conf --0023333331220122211112223222321121214788759999999999999980996999964
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=98.58 E-value=7.3e-07 Score=58.85 Aligned_cols=136 Identities=15% Similarity=0.113 Sum_probs=94.5
Q ss_pred CCCCEEEEECCCHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCC--CCEEEEECCC
Q ss_conf 7899499993743069-999999937999843222233344367786279999889888999986199--9628991279
Q 001559 572 KGTSSVLIIGAGRVCR-PAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP--NAEAVQLDVS 648 (1053)
Q Consensus 572 ~~~~~vliiGaG~vg~-~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~--~~~~~~~d~~ 648 (1053)
.+.-||.|||+|.+|+ ..+..+.....+ .-+.|+|+++++++++.+.+. ...+. ..+
T Consensus 31 ~~~iriaiIG~G~~~~~~~~~~~~~~~~~------------------~ivav~d~~~~~a~~~~~~~~i~~~~~~--~~~ 90 (221)
T d1h6da1 31 DRRFGYAIVGLGKYALNQILPGFAGCQHS------------------RIEALVSGNAEKAKIVAAEYGVDPRKIY--DYS 90 (221)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHTTTCSSE------------------EEEEEECSCHHHHHHHHHHTTCCGGGEE--CSS
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHCCCC------------------EEEEEECCCHHHHHHHHHHHCCCCCCCC--CCC
T ss_conf 99778999918399999999999738996------------------6999962888999999986301324443--227
Q ss_pred CHHHHHHHHC--CCCEEEECCCCCCCHHHHHHHHHHCCEEEEEE---CCCHHHHHHHHHHHHCCCEEEECCC--CCHHHH
Q ss_conf 9778997501--66099944885211799999887079099951---3675699999999975986980688--982478
Q 001559 649 DHKSLCKCIS--QVEIVISLLPASCHVMVANACIEFKKHLVTAS---YIDDSMSKLDEKAKGAGITILGEMG--LDPGID 721 (1053)
Q Consensus 649 d~~~l~~~i~--~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~s---y~~~~~~~L~~~Ak~~Gv~ii~g~G--~dPGi~ 721 (1053)
| +.++++ +.|+|+.++|...|..++..|++.|+|++.-- -...+..++.+.++++|+.+..+.. ++|...
T Consensus 91 d---~~ell~~~~iD~V~I~tp~~~H~~~~~~al~~gk~v~~EKPla~~~~e~~~l~~~a~~~~~~~~v~~~~r~~p~~~ 167 (221)
T d1h6da1 91 N---FDKIAKDPKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYRCHYNQFSA 167 (221)
T ss_dssp S---GGGGGGCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCEEECCGGGGCHHHH
T ss_pred C---HHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHH
T ss_conf 5---6552123332013312302445668888650111110278753889999999999985099479754113588999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999986
Q 001559 722 HMMAMKMINHA 732 (1053)
Q Consensus 722 ~mla~~~~~~~ 732 (1053)
.+ .+++++.
T Consensus 168 ~~--k~li~~~ 176 (221)
T d1h6da1 168 QL--DHLAEAV 176 (221)
T ss_dssp HH--HHHHHHH
T ss_pred HH--HHHHHHH
T ss_conf 99--9999865
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.54 E-value=8.7e-07 Score=58.36 Aligned_cols=126 Identities=17% Similarity=0.167 Sum_probs=91.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCC--CCEEEEECCCCHH
Q ss_conf 99499993743069999999937999843222233344367786279999889888999986199--9628991279977
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP--NAEAVQLDVSDHK 651 (1053)
Q Consensus 574 ~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~--~~~~~~~d~~d~~ 651 (1053)
+.|+.|||+|.+|+..+..+...+.+ .-+.|++++.++++++++.+. ..... ..|.+
T Consensus 1 kiki~iIG~G~~g~~~~~~l~~~~~~------------------~i~ai~d~~~~~~~~~~~~~~~~~~~~~---~~~~~ 59 (184)
T d1ydwa1 1 QIRIGVMGCADIARKVSRAIHLAPNA------------------TISGVASRSLEKAKAFATANNYPESTKI---HGSYE 59 (184)
T ss_dssp CEEEEEESCCTTHHHHHHHHHHCTTE------------------EEEEEECSSHHHHHHHHHHTTCCTTCEE---ESSHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCC------------------EEEEEEECCCCCCCCCHHCCCCCCCEEE---CCCHH
T ss_conf 96999996979999999999868997------------------8999996782003210101345530121---27678
Q ss_pred HHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEE---CCCHHHHHHHHHHHHCCCEEEECC--CCCHHHH
Q ss_conf 899750166099944885211799999887079099951---367569999999997598698068--8982478
Q 001559 652 SLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTAS---YIDDSMSKLDEKAKGAGITILGEM--GLDPGID 721 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~s---y~~~~~~~L~~~Ak~~Gv~ii~g~--G~dPGi~ 721 (1053)
++-+- .+.|+|+-++|...|...+..|+++|+|++.-- ....+..++.+.++++|+.++.+. .+.|.+.
T Consensus 60 ~ll~~-~~iD~v~I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~~~v~~~~r~~~~~~ 133 (184)
T d1ydwa1 60 SLLED-PEIDALYVPLPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQIMDGTMWVHPQEAC 133 (184)
T ss_dssp HHHHC-TTCCEEEECCCGGGHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCEEECCCGGGCHHHH
T ss_pred HHHHC-CCCCEEEECCCCHHHCCHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEEECCHHHH
T ss_conf 75211-321024202320100221455530240022053333679999999999996399899997566085789
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=98.54 E-value=3.3e-07 Score=61.07 Aligned_cols=81 Identities=16% Similarity=0.243 Sum_probs=70.8
Q ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCC---CCEEEEEC
Q ss_conf 87899499993-743069999999937999843222233344367786279999889888999986199---96289912
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP---NAEAVQLD 646 (1053)
Q Consensus 571 ~~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~---~~~~~~~d 646 (1053)
+.+.++++|.| +|++|+.+++.|++.| .+|.+++|+.++++++.+.+. ++....+|
T Consensus 20 ~l~gK~vlItGasgGIG~~ia~~la~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d 79 (191)
T d1luaa1 20 SVKGKKAVVLAGTGPVGMRSAALLAGEG--------------------AEVVLCGRKLDKAQAAADSVNKRFKVNVTAAE 79 (191)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTT--------------------CEEEEEESSHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHHC--------------------CCHHHCCCCHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 9999999997997799999999998611--------------------11121024568999999988740211121100
Q ss_pred CCCHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 7997789975016609994488521
Q 001559 647 VSDHKSLCKCISQVEIVISLLPASC 671 (1053)
Q Consensus 647 ~~d~~~l~~~i~~~DvVI~~~p~~~ 671 (1053)
++|.+.+.+.+.++|+|||+++.++
T Consensus 80 ~~~~~~~~~~~~~iDilin~Ag~g~ 104 (191)
T d1luaa1 80 TADDASRAEAVKGAHFVFTAGAIGL 104 (191)
T ss_dssp CCSHHHHHHHTTTCSEEEECCCTTC
T ss_pred CCCHHHHHHHHCCCCEEEECCCCCC
T ss_conf 0238999998537686202676460
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=98.48 E-value=3.3e-06 Score=54.53 Aligned_cols=118 Identities=10% Similarity=0.124 Sum_probs=88.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHHH
Q ss_conf 99499993743069999999937999843222233344367786279999889888999986199962899127997789
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 574 ~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
..+|.+||.|.+|.++++.|++.| + +|.++||++++++++.+......... .....+.+
T Consensus 2 ~~nIg~IGlG~MG~~mA~~L~~~G-~-------------------~V~v~dr~~~~~~~l~~~~~~~~~~~-~a~~~~~~ 60 (176)
T d2pgda2 2 QADIALIGLAVMGQNLILNMNDHG-F-------------------VVCAFNRTVSKVDDFLANEAKGTKVL-GAHSLEEM 60 (176)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTT-C-------------------CEEEECSSTHHHHHHHHTTTTTSSCE-ECSSHHHH
T ss_pred CCCEEEEEEHHHHHHHHHHHHHCC-C-------------------EEEEECCCHHHHHHHHHHCCCCCCCC-CHHHHHHH
T ss_conf 885999969599999999999789-9-------------------69998199899999997315444431-00001233
Q ss_pred HHHHCCCCEEEECCCCCCC-HHHHHHH---HHHCCEEEEEECC-CHHHHHHHHHHHHCCCEEEE
Q ss_conf 9750166099944885211-7999998---8707909995136-75699999999975986980
Q 001559 654 CKCISQVEIVISLLPASCH-VMVANAC---IEFKKHLVTASYI-DDSMSKLDEKAKGAGITILG 712 (1053)
Q Consensus 654 ~~~i~~~DvVI~~~p~~~~-~~v~~a~---i~~g~~~vD~sy~-~~~~~~L~~~Ak~~Gv~ii~ 712 (1053)
.+.+..+|+++.+++..-. ..+.... ++.|+.++|++-. ++.+..+.+.+++.|+.++.
T Consensus 61 ~~~~~~~~~ii~~~~~~~~v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~ld 124 (176)
T d2pgda2 61 VSKLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVG 124 (176)
T ss_dssp HHHBCSSCEEEECSCTTHHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEC
T ss_conf 4442234337872485688898999998415557489964851067899999987750884002
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=98.47 E-value=1.1e-06 Score=57.72 Aligned_cols=110 Identities=23% Similarity=0.278 Sum_probs=83.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHHHH
Q ss_conf 94999937430699999999379998432222333443677862799998898889999861999628991279977899
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 575 ~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
|||.+||.|.+|++++..|++.| + +|.+.||++++++++.+... .. ..+..
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~G-~-------------------~V~~~d~~~~~~~~~~~~~~--~~-------~~~~~ 51 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKAG-Y-------------------SLVVSDRNPEAIADVIAAGA--ET-------ASTAK 51 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTT-C-------------------EEEEECSCHHHHHHHHHTTC--EE-------CSSHH
T ss_pred CEEEEEEHHHHHHHHHHHHHHCC-C-------------------EEEEEECCCCHHHHHHHHHH--HH-------CCCHH
T ss_conf 98999943698999999999879-9-------------------69999288403578987400--01-------02399
Q ss_pred HHHCCCCEEEECCCCCCC-HHHH------HHHHHHCCEEEEEECCCHH-HHHHHHHHHHCCCEEEEC
Q ss_conf 750166099944885211-7999------9988707909995136756-999999999759869806
Q 001559 655 KCISQVEIVISLLPASCH-VMVA------NACIEFKKHLVTASYIDDS-MSKLDEKAKGAGITILGE 713 (1053)
Q Consensus 655 ~~i~~~DvVI~~~p~~~~-~~v~------~a~i~~g~~~vD~sy~~~~-~~~L~~~Ak~~Gv~ii~g 713 (1053)
+.++++|+|+.|+|..-. ..+. ...+..|+.++|.+-..++ ..++.+.+++.|+.++..
T Consensus 52 e~~~~~d~ii~~v~~~~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vda 118 (161)
T d1vpda2 52 AIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDA 118 (161)
T ss_dssp HHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEEC
T ss_pred HHHHCCCEEEEECCCHHHHHHHHHCCCCHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEECC
T ss_conf 9985899589974997889999827763010158998999788799899999999999859955555
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.45 E-value=1.9e-06 Score=56.13 Aligned_cols=118 Identities=24% Similarity=0.287 Sum_probs=86.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHHH
Q ss_conf 99499993743069999999937999843222233344367786279999889888999986199962899127997789
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 574 ~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
+++|.+||.|.+|+++++.|++.| + +|.+.||+.++.+.+...-. .. ...+
T Consensus 1 M~kIg~IGlG~MG~~iA~~L~~~g-~-------------------~v~~~d~~~~~~~~~~~~~~----~~-----~~~~ 51 (162)
T d3cuma2 1 MKQIAFIGLGHMGAPMATNLLKAG-Y-------------------LLNVFDLVQSAVDGLVAAGA----SA-----ARSA 51 (162)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTT-C-------------------EEEEECSSHHHHHHHHHTTC----EE-----CSSH
T ss_pred CCEEEEEEEHHHHHHHHHHHHHCC-C-------------------EEEEEECCHHHHHHHHHHHC----CC-----CCHH
T ss_conf 999999977899999999999779-9-------------------68999783014555321100----11-----1003
Q ss_pred HHHHCCCCEEEECCCCCCC-HHHH------HHHHHHCCEEEEEECCC-HHHHHHHHHHHHCCCEEEECCCCCHHHH
Q ss_conf 9750166099944885211-7999------99887079099951367-5699999999975986980688982478
Q 001559 654 CKCISQVEIVISLLPASCH-VMVA------NACIEFKKHLVTASYID-DSMSKLDEKAKGAGITILGEMGLDPGID 721 (1053)
Q Consensus 654 ~~~i~~~DvVI~~~p~~~~-~~v~------~a~i~~g~~~vD~sy~~-~~~~~L~~~Ak~~Gv~ii~g~G~dPGi~ 721 (1053)
.+.+..+|+++.|+|.... ..+. ...+..|+.++|.+-.. ....++.+.+++.|+.++. +++.-|..
T Consensus 52 ~e~~~~~diii~~v~~~~~~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~d-apv~Gg~~ 126 (162)
T d3cuma2 52 RDAVQGADVVISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLD-APVSGGTA 126 (162)
T ss_dssp HHHHTSCSEEEECCSCHHHHHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-CCEESCHH
T ss_pred HHHCCCCCEEEECCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEEE-CCCCCCCC
T ss_conf 4440366701222454065898873433322358999889978988878999999999977992893-51566832
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=2.3e-06 Score=55.53 Aligned_cols=80 Identities=20% Similarity=0.334 Sum_probs=69.9
Q ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 87899499993-74306999999993799984322223334436778627999988988899998619996289912799
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSD 649 (1053)
Q Consensus 571 ~~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d 649 (1053)
..++|+++|.| ++++|+++++.|++.| .+|.+.+|+.++++++.+.++++..+.+|++|
T Consensus 4 ~L~GK~~lITGas~GIG~aia~~la~~G--------------------~~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d 63 (244)
T d1pr9a_ 4 FLAGRRVLVTGAGKGIGRGTVQALHATG--------------------ARVVAVSRTQADLDSLVRECPGIEPVCVDLGD 63 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTT--------------------CEEEEEESCHHHHHHHHHHSTTCEEEECCTTC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 7799989993898789999999999869--------------------99999979999999999864897189983799
Q ss_pred HHHHHHHHC---CCCEEEECCCCC
Q ss_conf 778997501---660999448852
Q 001559 650 HKSLCKCIS---QVEIVISLLPAS 670 (1053)
Q Consensus 650 ~~~l~~~i~---~~DvVI~~~p~~ 670 (1053)
.+.+.++++ ..|++||..+..
T Consensus 64 ~~~v~~~~~~~g~iDilVnnAg~~ 87 (244)
T d1pr9a_ 64 WEATERALGSVGPVDLLVNNAAVA 87 (244)
T ss_dssp HHHHHHHHTTCCCCCEEEECCCCC
T ss_pred HHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 999999999729963999615643
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.40 E-value=7.7e-06 Score=52.15 Aligned_cols=112 Identities=15% Similarity=0.186 Sum_probs=81.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHHHH
Q ss_conf 94999937430699999999379998432222333443677862799998898889999861999628991279977899
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 575 ~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
|+|+|+|+|.+|+.+++.|.+.| .+|.+.+.++++++++.+.+ +..++..|.+|.+.|.
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g--------------------~~v~vid~d~~~~~~~~~~~-~~~vi~Gd~~~~~~l~ 59 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKG--------------------HDIVLIDIDKDICKKASAEI-DALVINGDCTKIKTLE 59 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--------------------CEEEEEESCHHHHHHHHHHC-SSEEEESCTTSHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--------------------CCCCEECCCHHHHHHHHHHH-HHHHCCCCCCCHHHHH
T ss_conf 98999898899999999999779--------------------97200217846502101110-0343147443116566
Q ss_pred HH-HCCCCEEEECCCCCCC-HHHHHHHHHHCCE-EEEEECCCHHHHHHHHHHHHCCCEEE
Q ss_conf 75-0166099944885211-7999998870790-99951367569999999997598698
Q 001559 655 KC-ISQVEIVISLLPASCH-VMVANACIEFKKH-LVTASYIDDSMSKLDEKAKGAGITIL 711 (1053)
Q Consensus 655 ~~-i~~~DvVI~~~p~~~~-~~v~~a~i~~g~~-~vD~sy~~~~~~~L~~~Ak~~Gv~ii 711 (1053)
++ +.++|.++.+++..-. ..+...+-+.+.. ++-....+... +..++.|+..+
T Consensus 60 ~~~i~~a~~vv~~t~~d~~N~~~~~~~k~~~~~~iI~~~~~~~~~----~~l~~~G~d~v 115 (132)
T d1lssa_ 60 DAGIEDADMYIAVTGKEEVNLMSSLLAKSYGINKTIARISEIEYK----DVFERLGVDVV 115 (132)
T ss_dssp HTTTTTCSEEEECCSCHHHHHHHHHHHHHTTCCCEEEECSSTTHH----HHHHHTTCSEE
T ss_pred HCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCHHHH----HHHHHCCCCEE
T ss_conf 507245432224677588888988899875996699985488789----99997799999
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.39 E-value=2.8e-06 Score=55.01 Aligned_cols=79 Identities=18% Similarity=0.257 Sum_probs=69.3
Q ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCH
Q ss_conf 7899499993-743069999999937999843222233344367786279999889888999986199962899127997
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 572 ~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
.++|+++|.| ++++|+.+++.|++.| .+|.+.+|+.++++++.+.++++..+.+|++|.
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~G--------------------a~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~~ 62 (242)
T d1cyda_ 3 FSGLRALVTGAGKGIGRDTVKALHASG--------------------AKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDW 62 (242)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTT--------------------CEEEEEESCHHHHHHHHHHSTTCEEEECCTTCH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHCCCCEEEEEECCCH
T ss_conf 899889994898699999999999879--------------------989999798899999998648974999848999
Q ss_pred HHHHHHHC---CCCEEEECCCCC
Q ss_conf 78997501---660999448852
Q 001559 651 KSLCKCIS---QVEIVISLLPAS 670 (1053)
Q Consensus 651 ~~l~~~i~---~~DvVI~~~p~~ 670 (1053)
+.+.+.++ ..|++||+.+..
T Consensus 63 ~~v~~~~~~~g~iDilVnnAg~~ 85 (242)
T d1cyda_ 63 DATEKALGGIGPVDLLVNNAALV 85 (242)
T ss_dssp HHHHHHHTTCCCCSEEEECCCCC
T ss_pred HHHHHHHHHCCCCEEEEECCCCC
T ss_conf 99999999719970999788533
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=8.7e-07 Score=58.33 Aligned_cols=75 Identities=21% Similarity=0.163 Sum_probs=63.8
Q ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHH
Q ss_conf 99499993-74306999999993799984322223334436778627999988988899998619996289912799778
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
++||+|+| +|++|+.+++.|.+.| + +|.+..|+++++... .-++++.+.+|.+|.+.
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~g-~-------------------~V~~~~R~~~~~~~~--~~~~~~~~~gD~~d~~~ 60 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQAG-Y-------------------EVTVLVRDSSRLPSE--GPRPAHVVVGDVLQAAD 60 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT-C-------------------EEEEEESCGGGSCSS--SCCCSEEEESCTTSHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-C-------------------EEEEEECCHHHCCCC--CCCCCCCCCCCCCCHHH
T ss_conf 8889999998789999999999786-9-------------------899998371645542--12353201122211456
Q ss_pred HHHHHCCCCEEEECCCCC
Q ss_conf 997501660999448852
Q 001559 653 LCKCISQVEIVISLLPAS 670 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~ 670 (1053)
+.+.++++|+||++++..
T Consensus 61 l~~al~~~d~vi~~~g~~ 78 (205)
T d1hdoa_ 61 VDKTVAGQDAVIVLLGTR 78 (205)
T ss_dssp HHHHHTTCSEEEECCCCT
T ss_pred HHHHHCCCCEEEEEECCC
T ss_conf 999865987899983158
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=4.5e-06 Score=53.70 Aligned_cols=80 Identities=14% Similarity=0.206 Sum_probs=68.5
Q ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 87899499993-74306999999993799984322223334436778627999988988899998619996289912799
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSD 649 (1053)
Q Consensus 571 ~~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d 649 (1053)
..++|.++|.| ++++|+.+++.|++.| .+|.+.+|+.++++++.+.++++..+.+|++|
T Consensus 3 rl~GK~alITGas~GIG~aia~~la~~G--------------------a~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~ 62 (250)
T d1ydea1 3 RYAGKVVVVTGGGRGIGAGIVRAFVNSG--------------------ARVVICDKDESGGRALEQELPGAVFILCDVTQ 62 (250)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTT--------------------CEEEEEESCHHHHHHHHHHCTTEEEEECCTTS
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 9999879991888799999999999879--------------------99999979989999999866997699822799
Q ss_pred HHHHHHHHC-------CCCEEEECCCCC
Q ss_conf 778997501-------660999448852
Q 001559 650 HKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 650 ~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
.+.+.++++ ..|++||..+..
T Consensus 63 ~~~v~~~~~~~~~~~g~iDilVnnAG~~ 90 (250)
T d1ydea1 63 EDDVKTLVSETIRRFGRLDCVVNNAGHH 90 (250)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 9999999999998458977799536434
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=98.22 E-value=2.2e-05 Score=49.15 Aligned_cols=115 Identities=19% Similarity=0.189 Sum_probs=74.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCCCCCCEEEE-EEC---CHHHHH----HHHHCCCCCEE
Q ss_conf 7899499993743069999999937999843222233344-36778627999-988---988899----99861999628
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETD-FEWQNDIRVLV-ASL---YLKDAE----EVIEGIPNAEA 642 (1053)
Q Consensus 572 ~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~-~~~~~~~~v~v-~~r---~~~~a~----~l~~~~~~~~~ 642 (1053)
.+.++|+|+|+|++|..++.+|+..| +. ...++|. .++-+|+...+ .+. ...|++ ++.+..|.+.+
T Consensus 28 L~~~~VliiG~GglGs~va~~La~~G-vg----~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i 102 (247)
T d1jw9b_ 28 LKDSRVLIVGLGGLGCAASQYLASAG-VG----NLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAI 102 (247)
T ss_dssp HHHCEEEEECCSHHHHHHHHHHHHHT-CS----EEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEE
T ss_pred HHCCCEEEECCCHHHHHHHHHHHHCC-CC----EEEEECCCCCCHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 96798999897889999999999849-98----68998884302114333024647652934798888888874102210
Q ss_pred EEECCC-CHHHHHHHHCCCCEEEECCCCC-CCHHHHHHHHHHCCEEEEEEC
Q ss_conf 991279-9778997501660999448852-117999998870790999513
Q 001559 643 VQLDVS-DHKSLCKCISQVEIVISLLPAS-CHVMVANACIEFKKHLVTASY 691 (1053)
Q Consensus 643 ~~~d~~-d~~~l~~~i~~~DvVI~~~p~~-~~~~v~~a~i~~g~~~vD~sy 691 (1053)
...+.. +.......+...|+++++++.. ....+.+.|.+.+++++..++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~divid~~d~~~~~~~in~~~~~~~ip~i~g~~ 153 (247)
T d1jw9b_ 103 TPVNALLDDAELAALIAEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAA 153 (247)
T ss_dssp EEECSCCCHHHHHHHHHTSSEEEECCSSHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred HHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 214455322011011323104540242255533677999981998614554
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.21 E-value=6.7e-06 Score=52.56 Aligned_cols=80 Identities=13% Similarity=0.198 Sum_probs=66.7
Q ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCC-CCEEEEECCC
Q ss_conf 87899499993-743069999999937999843222233344367786279999889888999986199-9628991279
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NAEAVQLDVS 648 (1053)
Q Consensus 571 ~~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~~~~~~d~~ 648 (1053)
..+.|.++|.| ++++|+.+++.|++.| .+|.+.+|+.++++++.+.+. ++..+.+|++
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~ 62 (244)
T d1nffa_ 3 RLTGKVALVSGGARGMGASHVRAMVAEG--------------------AKVVFGDILDEEGKAMAAELADAARYVHLDVT 62 (244)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTT--------------------CEEEEEESCHHHHHHHHHHTGGGEEEEECCTT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 6699889994888889999999999879--------------------99999979889999999985076369995369
Q ss_pred CHHHHHHHHC-------CCCEEEECCCCC
Q ss_conf 9778997501-------660999448852
Q 001559 649 DHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 649 d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
|.+.+.++++ ..|++||+.+..
T Consensus 63 ~~~~v~~~~~~~~~~~g~idilinnAG~~ 91 (244)
T d1nffa_ 63 QPAQWKAAVDTAVTAFGGLHVLVNNAGIL 91 (244)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 99999999999999809970999787226
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=98.16 E-value=0.00012 Score=44.38 Aligned_cols=132 Identities=11% Similarity=0.119 Sum_probs=85.0
Q ss_pred CCCCCEEEEECCCHHH----HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCE-EEEEECCHHHHHHHHHCCCCCEEEEE
Q ss_conf 8789949999374306----999999993799984322223334436778627-99998898889999861999628991
Q 001559 571 TKGTSSVLIIGAGRVC----RPAAELLASFGSPSHQMQKTCMETDFEWQNDIR-VLVASLYLKDAEEVIEGIPNAEAVQL 645 (1053)
Q Consensus 571 ~~~~~~vliiGaG~vg----~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-v~v~~r~~~~a~~l~~~~~~~~~~~~ 645 (1053)
..+..||.|||+|..+ +..+..+....+ +.+ +.|++++.+++++.++.+.--.....
T Consensus 13 ~~k~irvgiIG~G~~~~~~~~~h~~ai~~~~~------------------~~~ivav~d~~~~~~~~~~~~~~~~~~~~~ 74 (237)
T d2nvwa1 13 SSRPIRVGFVGLTSGKSWVAKTHFLAIQQLSS------------------QFQIVALYNPTLKSSLQTIEQLQLKHATGF 74 (237)
T ss_dssp GGCCEEEEEECCCSTTSHHHHTHHHHHHHTTT------------------TEEEEEEECSCHHHHHHHHHHTTCTTCEEE
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHCCC------------------CEEEEEEECCCHHHHHHHHHHCCCCCCEEE
T ss_conf 99970899996686340899999999984699------------------859999991999999999986036652364
Q ss_pred CCCCHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHC------CEEEEEEC---CCHHHHHHHHHHHHC-CCEEEEC--
Q ss_conf 27997789975016609994488521179999988707------90999513---675699999999975-9869806--
Q 001559 646 DVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFK------KHLVTASY---IDDSMSKLDEKAKGA-GITILGE-- 713 (1053)
Q Consensus 646 d~~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g------~~~vD~sy---~~~~~~~L~~~Ak~~-Gv~ii~g-- 713 (1053)
.+.+++.+- .+.|+|+.++|...|...+..|+++| +|++.--- ...+..++.+.|+++ ++.+..+
T Consensus 75 --~~~~~l~~~-~~iD~V~i~tp~~~h~~~~~~al~aG~~~~~~k~V~~EKPla~~~~e~~~l~~~a~~~~~~~~~v~~~ 151 (237)
T d2nvwa1 75 --DSLESFAQY-KDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRANLQTIICLQ 151 (237)
T ss_dssp --SCHHHHHHC-TTCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCTTCEEEEECG
T ss_pred --CCHHHCCCC-CCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf --352230111-22101102588710114799999736022578449994555477999999999876348806999977
Q ss_pred CCCCHHHHHH
Q ss_conf 8898247899
Q 001559 714 MGLDPGIDHM 723 (1053)
Q Consensus 714 ~G~dPGi~~m 723 (1053)
..+.|++..+
T Consensus 152 ~R~~p~~~~~ 161 (237)
T d2nvwa1 152 GRYNSVVGNI 161 (237)
T ss_dssp GGCCHHHHHH
T ss_pred CCCCHHHHHH
T ss_conf 7688899999
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=98.15 E-value=1e-05 Score=51.41 Aligned_cols=81 Identities=20% Similarity=0.234 Sum_probs=67.5
Q ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCC-CCEEEEECCC
Q ss_conf 87899499993-743069999999937999843222233344367786279999889888999986199-9628991279
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NAEAVQLDVS 648 (1053)
Q Consensus 571 ~~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~~~~~~d~~ 648 (1053)
+.+.|.++|.| ++++|+.+++.|++.| ..|.+++|+.++++++.+.++ ++..+.+|++
T Consensus 2 dL~gK~alVTGas~GIG~aia~~la~~G--------------------a~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~ 61 (254)
T d1hdca_ 2 DLSGKTVIITGGARGLGAEAARQAVAAG--------------------ARVVLADVLDEEGAATARELGDAARYQHLDVT 61 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTT--------------------CEEEEEESCHHHHHHHHHTTGGGEEEEECCTT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 9999889994868799999999999879--------------------98999979878999999981886279983259
Q ss_pred CHHHHHHHHC-------CCCEEEECCCCCC
Q ss_conf 9778997501-------6609994488521
Q 001559 649 DHKSLCKCIS-------QVEIVISLLPASC 671 (1053)
Q Consensus 649 d~~~l~~~i~-------~~DvVI~~~p~~~ 671 (1053)
|.+++.++++ ..|++||+.+...
T Consensus 62 ~~~~v~~~~~~~~~~~g~iDilVnnAg~~~ 91 (254)
T d1hdca_ 62 IEEDWQRVVAYAREEFGSVDGLVNNAGIST 91 (254)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEECCCCCC
T ss_conf 999999999999998299638995476544
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=98.15 E-value=1.3e-05 Score=50.59 Aligned_cols=78 Identities=26% Similarity=0.331 Sum_probs=65.5
Q ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCH
Q ss_conf 7899499993-743069999999937999843222233344367786279999889888999986199962899127997
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 572 ~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
.+.|.++|.| ++++|+.+++.|++.| .+|.+.+|+.++++++.+.+. +..+.+|++|.
T Consensus 3 L~gK~~lITGas~GIG~aia~~l~~~G--------------------~~V~~~~r~~~~l~~~~~~~~-~~~~~~Dv~~~ 61 (242)
T d1ulsa_ 3 LKDKAVLITGAAHGIGRATLELFAKEG--------------------ARLVACDIEEGPLREAAEAVG-AHPVVMDVADP 61 (242)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT--------------------CEEEEEESCHHHHHHHHHTTT-CEEEECCTTCH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHCC-CEEEEEECCCH
T ss_conf 899899993888889999999999879--------------------999999798789999999729-84999956999
Q ss_pred HHHHHHHC-------CCCEEEECCCCC
Q ss_conf 78997501-------660999448852
Q 001559 651 KSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 651 ~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+++.++++ ..|++||+.+..
T Consensus 62 ~~v~~~~~~~~~~~g~iDilVnnAG~~ 88 (242)
T d1ulsa_ 62 ASVERGFAEALAHLGRLDGVVHYAGIT 88 (242)
T ss_dssp HHHHHHHHHHHHHHSSCCEEEECCCCC
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 999999999998559960999887444
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=98.14 E-value=7.4e-06 Score=52.27 Aligned_cols=79 Identities=29% Similarity=0.414 Sum_probs=66.2
Q ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCC-CCEEEEECCCC
Q ss_conf 7899499993-743069999999937999843222233344367786279999889888999986199-96289912799
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NAEAVQLDVSD 649 (1053)
Q Consensus 572 ~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~~~~~~d~~d 649 (1053)
.+.|.++|.| ++++|+.+++.|++.| .+|.+++|+.++++++.+.++ ++..+.+|++|
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~G--------------------a~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~ 62 (256)
T d1k2wa_ 3 LDGKTALITGSARGIGRAFAEAYVREG--------------------ARVAIADINLEAARATAAEIGPAACAIALDVTD 62 (256)
T ss_dssp TTTEEEEEETCSSHHHHHHHHHHHHTT--------------------EEEEEEESCHHHHHHHHHHHCTTEEEEECCTTC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 899999993888799999999999879--------------------999999799999999999858954899953799
Q ss_pred HHHHHHHHC-------CCCEEEECCCCC
Q ss_conf 778997501-------660999448852
Q 001559 650 HKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 650 ~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
.+++.++++ ..|++||..+..
T Consensus 63 ~~~v~~~~~~~~~~~g~iDilVnnAg~~ 90 (256)
T d1k2wa_ 63 QASIDRCVAELLDRWGSIDILVNNAALF 90 (256)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 9999999999999709963898422224
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=98.13 E-value=1.5e-05 Score=50.20 Aligned_cols=112 Identities=16% Similarity=0.153 Sum_probs=77.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHHHH
Q ss_conf 94999937430699999999379998432222333443677862799998898889999861999628991279977899
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 575 ~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
|+++|+|+|.+|+.+++.|.+.| .++.+++.++++++++.+.. ..++..|.++.+.|.
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g--------------------~~vvvid~d~~~~~~~~~~~--~~~~~gd~~~~~~l~ 58 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMG--------------------HEVLAVDINEEKVNAYASYA--THAVIANATEENELL 58 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTT--------------------CCCEEEESCHHHHHHTTTTC--SEEEECCTTCTTHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--------------------CEEEEECCCHHHHHHHHHHC--CCCEEEECCCCHHHH
T ss_conf 97999898899999999999879--------------------91899437088889999727--742252032101342
Q ss_pred HH-HCCCCEEEECCCCCCC-HHHHH-HHHHHCC-EEEEEECCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 75-0166099944885211-79999-9887079-0999513675699999999975986980
Q 001559 655 KC-ISQVEIVISLLPASCH-VMVAN-ACIEFKK-HLVTASYIDDSMSKLDEKAKGAGITILG 712 (1053)
Q Consensus 655 ~~-i~~~DvVI~~~p~~~~-~~v~~-a~i~~g~-~~vD~sy~~~~~~~L~~~Ak~~Gv~ii~ 712 (1053)
+. +.++|.||.+++-... ..+.. ..-..+. .++-.+..+... +..++.|+..+.
T Consensus 59 ~a~i~~a~~vi~~~~~~~~~~~~~~~~~~~~~~~~iiar~~~~~~~----~~l~~~Gad~vi 116 (134)
T d2hmva1 59 SLGIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHH----KVLEKIGADRII 116 (134)
T ss_dssp HHTGGGCSEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCSHHHH----HHHHHHTCSEEE
T ss_pred CCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEECCCHHHH----HHHHHCCCCEEE
T ss_conf 0577354578897586677589999999986998278641658689----999978999999
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=98.12 E-value=3.6e-05 Score=47.78 Aligned_cols=119 Identities=17% Similarity=0.183 Sum_probs=84.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCC---EEEEECCCCH
Q ss_conf 9949999374306999999993799984322223334436778627999988988899998619996---2899127997
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNA---EAVQLDVSDH 650 (1053)
Q Consensus 574 ~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~---~~~~~d~~d~ 650 (1053)
.|+|.|||.|.+|.++++.|++.| + +|.++||++++++++.+..... ..... ..+.
T Consensus 1 ~MkIGvIGlG~MG~~ma~~L~~~G-~-------------------~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~-~~~~ 59 (178)
T d1pgja2 1 SMDVGVVGLGVMGANLALNIAEKG-F-------------------KVAVFNRTYSKSEEFMKANASAPFAGNLKA-FETM 59 (178)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTT-C-------------------CEEEECSSHHHHHHHHHHTTTSTTGGGEEE-CSCH
T ss_pred CCEEEEEEEHHHHHHHHHHHHHCC-C-------------------EEEEEECCHHHHHHHHHCCCCCCCCCCHHH-HHHH
T ss_conf 989999916198999999999789-9-------------------599997998999999982896200211245-5434
Q ss_pred HHHHHHHCCCCEEEECCCCCCC-HH---HHHHHHHHCCEEEEEECCCH-HHHHHHHHHHHCCCEEEEC
Q ss_conf 7899750166099944885211-79---99998870790999513675-6999999999759869806
Q 001559 651 KSLCKCISQVEIVISLLPASCH-VM---VANACIEFKKHLVTASYIDD-SMSKLDEKAKGAGITILGE 713 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~-~~---v~~a~i~~g~~~vD~sy~~~-~~~~L~~~Ak~~Gv~ii~g 713 (1053)
+.+...+...+.++.+++.... .. .....+..+..++|.+-..+ ....+.+..++.++.++..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~lda 127 (178)
T d1pgja2 60 EAFAASLKKPRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGM 127 (178)
T ss_dssp HHHHHHBCSSCEEEECCCCSHHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHCCEEEECC
T ss_conf 67887525660799960575323322230354324561530567543568999999986036047502
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=98.10 E-value=1.4e-05 Score=50.53 Aligned_cols=79 Identities=19% Similarity=0.344 Sum_probs=65.3
Q ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCC---CCEEEEECC
Q ss_conf 7899499993-743069999999937999843222233344367786279999889888999986199---962899127
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP---NAEAVQLDV 647 (1053)
Q Consensus 572 ~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~---~~~~~~~d~ 647 (1053)
.+.|.++|.| ++++|+.+++.|++.| .+|.+++|+.++++++++.+. .+..+.+|+
T Consensus 4 L~gKvalITGas~GIG~aia~~la~~G--------------------a~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv 63 (268)
T d2bgka1 4 LQDKVAIITGGAGGIGETTAKLFVRYG--------------------AKVVIADIADDHGQKVCNNIGSPDVISFVHCDV 63 (268)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT--------------------CEEEEEESCHHHHHHHHHHHCCTTTEEEEECCT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 899889993898699999999999879--------------------989999798899999999835899569998668
Q ss_pred CCHHHHHHHHC-------CCCEEEECCCCC
Q ss_conf 99778997501-------660999448852
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+|.+++.++++ ..|++||+.+..
T Consensus 64 ~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~ 93 (268)
T d2bgka1 64 TKDEDVRNLVDTTIAKHGKLDIMFGNVGVL 93 (268)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CCHHHHHHHHHHHHHHCCCCCEECCCCCCC
T ss_conf 999999999999999759722632532235
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=98.07 E-value=6.2e-05 Score=46.21 Aligned_cols=86 Identities=15% Similarity=0.194 Sum_probs=61.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCC------CCEEEEECC
Q ss_conf 99499993743069999999937999843222233344367786279999889888999986199------962899127
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP------NAEAVQLDV 647 (1053)
Q Consensus 574 ~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~------~~~~~~~d~ 647 (1053)
.+++.|||+|.+|.+++..|++.| + +|.+.+|+.++++.+...-. .........
T Consensus 1 sk~iaIiGaG~~G~~~A~~l~~~G-~-------------------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (184)
T d1bg6a2 1 SKTYAVLGLGNGGHAFAAYLALKG-Q-------------------SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPD 60 (184)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT-C-------------------EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-C-------------------EEEEEECCHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 998999896699999999999889-9-------------------79999899999999997699852233222011122
Q ss_pred CCHHHHHHHHCCCCEEEECCCCCCCHHHHHHH
Q ss_conf 99778997501660999448852117999998
Q 001559 648 SDHKSLCKCISQVEIVISLLPASCHVMVANAC 679 (1053)
Q Consensus 648 ~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~a~ 679 (1053)
.....+.+.++++|+||-++|...+..+.+.+
T Consensus 61 ~~~~~~~e~~~~aD~iii~v~~~~~~~~~~~i 92 (184)
T d1bg6a2 61 LLTSDIGLAVKDADVILIVVPAIHHASIAANI 92 (184)
T ss_dssp EEESCHHHHHTTCSEEEECSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEEECHHHHHHHHHHH
T ss_conf 22232676755798999997106899999986
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=98.03 E-value=1.1e-05 Score=51.02 Aligned_cols=79 Identities=22% Similarity=0.304 Sum_probs=64.9
Q ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCC-CCEEEEECCCC
Q ss_conf 7899499993-743069999999937999843222233344367786279999889888999986199-96289912799
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NAEAVQLDVSD 649 (1053)
Q Consensus 572 ~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~~~~~~d~~d 649 (1053)
.+.+.++|.| ++++|+.+++.|++.| .+|.+++|+.++++++.+.++ ++..+.+|++|
T Consensus 2 l~gK~alITGas~GIG~a~a~~l~~~G--------------------~~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~ 61 (243)
T d1q7ba_ 2 FEGKIALVTGASRGIGRAIAETLAARG--------------------AKVIGTATSENGAQAISDYLGANGKGLMLNVTD 61 (243)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTT--------------------CEEEEEESSHHHHHHHHHHHGGGEEEEECCTTC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 999999994888889999999999869--------------------999999698889999999857777189998357
Q ss_pred HHHHHHHHC-------CCCEEEECCCCC
Q ss_conf 778997501-------660999448852
Q 001559 650 HKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 650 ~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
.+.+.++++ ..|++||..+..
T Consensus 62 ~~~v~~~~~~~~~~~g~iDilVnnAg~~ 89 (243)
T d1q7ba_ 62 PASIESVLEKIRAEFGEVDILVNNAGIT 89 (243)
T ss_dssp HHHHHHHHHHHHHHTCSCSEEEECCCCC
T ss_pred HHHHHHHHHHHHCCCCCCCEEHHHHHHC
T ss_conf 8984443300001168856101212102
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=98.03 E-value=1.7e-05 Score=49.93 Aligned_cols=78 Identities=14% Similarity=0.206 Sum_probs=63.2
Q ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCC----CCEEEEEC
Q ss_conf 7899499993-743069999999937999843222233344367786279999889888999986199----96289912
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP----NAEAVQLD 646 (1053)
Q Consensus 572 ~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~----~~~~~~~d 646 (1053)
.+.|.++|.| ++++|+.+++.|++.| ..|.+++|+.++++++.+.+. ++..+.+|
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~G--------------------a~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~D 62 (260)
T d1zema1 3 FNGKVCLVTGAGGNIGLATALRLAEEG--------------------TAIALLDMNREALEKAEASVREKGVEARSYVCD 62 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT--------------------CEEEEEESCHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 899889992888789999999999879--------------------989999899899999999999529938999844
Q ss_pred CCCHHHHHHHHC-------CCCEEEECCCC
Q ss_conf 799778997501-------66099944885
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
++|.+.+.++++ ..|++||..+.
T Consensus 63 v~~~~~v~~~~~~~~~~~g~iDilVnnaG~ 92 (260)
T d1zema1 63 VTSEEAVIGTVDSVVRDFGKIDFLFNNAGY 92 (260)
T ss_dssp TTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCCHHHHHHHHHHHHHHHCCCCEEHHHHCC
T ss_conf 899999999999999983898732000012
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=98.03 E-value=1.4e-05 Score=50.37 Aligned_cols=80 Identities=15% Similarity=0.152 Sum_probs=65.3
Q ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCC---CCEEEEECC
Q ss_conf 7899499993-743069999999937999843222233344367786279999889888999986199---962899127
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP---NAEAVQLDV 647 (1053)
Q Consensus 572 ~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~---~~~~~~~d~ 647 (1053)
.+.+.++|.| ++++|+.+++.|++.| .+|.+++|+.++++++.+.+. ++..+.+|+
T Consensus 4 L~gK~alVTGas~GIG~aia~~la~~G--------------------a~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv 63 (251)
T d1zk4a1 4 LDGKVAIITGGTLGIGLAIATKFVEEG--------------------AKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDS 63 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT--------------------CEEEEEESCHHHHHHHHHHHCCTTTEEEEECCT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 799889994888789999999999879--------------------999999798789999999857899579998468
Q ss_pred CCHHHHHHHHC-------CCCEEEECCCCCC
Q ss_conf 99778997501-------6609994488521
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPASC 671 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~~~ 671 (1053)
+|.+.+.++++ ..|++||+.+...
T Consensus 64 ~~~~~v~~~~~~~~~~~G~iDiLVnnAg~~~ 94 (251)
T d1zk4a1 64 SDEDGWTKLFDATEKAFGPVSTLVNNAGIAV 94 (251)
T ss_dssp TCHHHHHHHHHHHHHHHSSCCEEEECCCCCC
T ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 9999999999999997099339996664342
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=1.9e-05 Score=49.65 Aligned_cols=81 Identities=16% Similarity=0.195 Sum_probs=66.0
Q ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCC----CCCEEEEE
Q ss_conf 87899499993-74306999999993799984322223334436778627999988988899998619----99628991
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQL 645 (1053)
Q Consensus 571 ~~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~ 645 (1053)
...++.++|-| ++++|+.++..|++.| ..|.+.+|+.++++++.+.+ +++..+.+
T Consensus 4 ~l~Gkv~lITGas~GIG~~ia~~la~~G--------------------~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~ 63 (244)
T d1yb1a_ 4 SVTGEIVLITGAGHGIGRLTAYEFAKLK--------------------SKLVLWDINKHGLEETAAKCKGLGAKVHTFVV 63 (244)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTT--------------------CEEEEEESCHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 9999989993888689999999999879--------------------98999989999999999998842994799995
Q ss_pred CCCCHHHHHHHHC-------CCCEEEECCCCCC
Q ss_conf 2799778997501-------6609994488521
Q 001559 646 DVSDHKSLCKCIS-------QVEIVISLLPASC 671 (1053)
Q Consensus 646 d~~d~~~l~~~i~-------~~DvVI~~~p~~~ 671 (1053)
|++|.+.+.++++ ..|++||+.+...
T Consensus 64 Dvs~~~~v~~~~~~i~~~~g~idilinnag~~~ 96 (244)
T d1yb1a_ 64 DCSNREDIYSSAKKVKAEIGDVSILVNNAGVVY 96 (244)
T ss_dssp CTTCHHHHHHHHHHHHHHTCCCSEEEECCCCCC
T ss_pred ECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 179989999999999998099764686333356
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=98.02 E-value=3.1e-05 Score=48.17 Aligned_cols=79 Identities=23% Similarity=0.275 Sum_probs=65.9
Q ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCC-CCEEEEECCCC
Q ss_conf 7899499993-743069999999937999843222233344367786279999889888999986199-96289912799
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NAEAVQLDVSD 649 (1053)
Q Consensus 572 ~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~~~~~~d~~d 649 (1053)
.+.|.++|.| ++++|+.+++.|++.| .+|.+++|+.++++++.+.+. ++..+++|+++
T Consensus 3 l~gK~alItGas~GIG~aia~~l~~~G--------------------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~ 62 (241)
T d2a4ka1 3 LSGKTILVTGAASGIGRAALDLFAREG--------------------ASLVAVDREERLLAEAVAALEAEAIAVVADVSD 62 (241)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT--------------------CEEEEEESCHHHHHHHHHTCCSSEEEEECCTTS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 799789993898899999999999879--------------------999999798899999999748966999800799
Q ss_pred HHHHHHHHC-------CCCEEEECCCCC
Q ss_conf 778997501-------660999448852
Q 001559 650 HKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 650 ~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
.+.+.++++ ..|++||..+..
T Consensus 63 ~~~i~~~~~~i~~~~g~iDiLinnAg~~ 90 (241)
T d2a4ka1 63 PKAVEAVFAEALEEFGRLHGVAHFAGVA 90 (241)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEEGGGGT
T ss_pred HHHHHHHHHHHHHHHCCCCEECCCCCCC
T ss_conf 9999999999999829955761444334
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=98.02 E-value=1.8e-05 Score=49.67 Aligned_cols=81 Identities=21% Similarity=0.228 Sum_probs=63.7
Q ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCC----CCCEEEEE
Q ss_conf 87899499993-74306999999993799984322223334436778627999988988899998619----99628991
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQL 645 (1053)
Q Consensus 571 ~~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~ 645 (1053)
+.++|+++|.| ++++|++++..|++.| .+|.+.+|+.++++++.+.+ ..+..+.+
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G--------------------~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~ 62 (258)
T d1ae1a_ 3 SLKGTTALVTGGSKGIGYAIVEELAGLG--------------------ARVYTCSRNEKELDECLEIWREKGLNVEGSVC 62 (258)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTT--------------------CEEEEEESCHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 9899989994888799999999999879--------------------99999979989999999999743887537995
Q ss_pred CCCCHHHHHHHHC--------CCCEEEECCCCCC
Q ss_conf 2799778997501--------6609994488521
Q 001559 646 DVSDHKSLCKCIS--------QVEIVISLLPASC 671 (1053)
Q Consensus 646 d~~d~~~l~~~i~--------~~DvVI~~~p~~~ 671 (1053)
|+++.+.+.+++. ..|++||+.+...
T Consensus 63 D~s~~~~~~~~~~~~~~~~~g~idilinnag~~~ 96 (258)
T d1ae1a_ 63 DLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVI 96 (258)
T ss_dssp CTTCHHHHHHHHHHHHHHTTSCCCEEEECCCCCC
T ss_pred ECCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 2499999999999999984887289862543344
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=98.01 E-value=2.6e-05 Score=48.72 Aligned_cols=81 Identities=23% Similarity=0.245 Sum_probs=63.8
Q ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCC-----CCCEEEE
Q ss_conf 87899499993-74306999999993799984322223334436778627999988988899998619-----9962899
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI-----PNAEAVQ 644 (1053)
Q Consensus 571 ~~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~-----~~~~~~~ 644 (1053)
+.+.+.++|.| ++++|+.+++.|++.| ..|.+.+|+.+++++..+.+ .++..+.
T Consensus 2 ~l~gK~~lITGas~GIG~aia~~la~~G--------------------a~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~ 61 (251)
T d1vl8a_ 2 DLRGRVALVTGGSRGLGFGIAQGLAEAG--------------------CSVVVASRNLEEASEAAQKLTEKYGVETMAFR 61 (251)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTT--------------------CEEEEEESCHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 9999889992888799999999999879--------------------98999979889999999999997099479998
Q ss_pred ECCCCHHHHHHHHC-------CCCEEEECCCCCC
Q ss_conf 12799778997501-------6609994488521
Q 001559 645 LDVSDHKSLCKCIS-------QVEIVISLLPASC 671 (1053)
Q Consensus 645 ~d~~d~~~l~~~i~-------~~DvVI~~~p~~~ 671 (1053)
+|++|.+.+.++++ ..|++||+.+...
T Consensus 62 ~Dv~~~~~v~~~~~~~~~~~g~iDiLVnnAG~~~ 95 (251)
T d1vl8a_ 62 CDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINR 95 (251)
T ss_dssp CCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCC
T ss_conf 3689999999999999997399989998999899
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=2.2e-05 Score=49.20 Aligned_cols=81 Identities=14% Similarity=0.280 Sum_probs=64.0
Q ss_pred CCCCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCC----C-----C
Q ss_conf 987899499993-74306999999993799984322223334436778627999988988899998619----9-----9
Q 001559 570 GTKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----P-----N 639 (1053)
Q Consensus 570 ~~~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~-----~ 639 (1053)
...+++.++|.| ++++|+.+++.|++.| ..|.+++|+.++++++++.+ + +
T Consensus 8 g~L~gKvalITGas~GIG~aia~~la~~G--------------------a~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~ 67 (297)
T d1yxma1 8 GLLQGQVAIVTGGATGIGKAIVKELLELG--------------------SNVVIASRKLERLKSAADELQANLPPTKQAR 67 (297)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTT--------------------CEEEEEESCHHHHHHHHHHHHHTSCTTCCCC
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 97799989993888789999999999879--------------------9899997988999999999985303246964
Q ss_pred CEEEEECCCCHHHHHHHHC-------CCCEEEECCCCC
Q ss_conf 6289912799778997501-------660999448852
Q 001559 640 AEAVQLDVSDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 640 ~~~~~~d~~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+..+.+|++|.+.+.++++ ..|++||..+..
T Consensus 68 ~~~~~~Dvs~~~~v~~~~~~~~~~~G~iDiLVnnAg~~ 105 (297)
T d1yxma1 68 VIPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQ 105 (297)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCC
T ss_conf 99996668999999999999999719907999614444
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=2e-05 Score=49.41 Aligned_cols=81 Identities=19% Similarity=0.227 Sum_probs=64.3
Q ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCC------CCEEE
Q ss_conf 87899499993-743069999999937999843222233344367786279999889888999986199------96289
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP------NAEAV 643 (1053)
Q Consensus 571 ~~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~------~~~~~ 643 (1053)
..+.+.++|.| ++++|+.+++.|++.| ..|.+++|+.++++++++.+. ++..+
T Consensus 7 ~lk~Kv~lITGas~GIG~aiA~~la~~G--------------------~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~ 66 (257)
T d1xg5a_ 7 RWRDRLALVTGASGGIGAAVARALVQQG--------------------LKVVGCARTVGNIEELAAECKSAGYPGTLIPY 66 (257)
T ss_dssp GGTTCEEEEESTTSHHHHHHHHHHHHTT--------------------CEEEEEESCHHHHHHHHHHHHHTTCSSEEEEE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 8799889994898889999999999879--------------------99999979889999999999856999529999
Q ss_pred EECCCCHHHHHHHHC-------CCCEEEECCCCCC
Q ss_conf 912799778997501-------6609994488521
Q 001559 644 QLDVSDHKSLCKCIS-------QVEIVISLLPASC 671 (1053)
Q Consensus 644 ~~d~~d~~~l~~~i~-------~~DvVI~~~p~~~ 671 (1053)
.+|+++.+++.+++. ..|++||+.+...
T Consensus 67 ~~Dls~~~~v~~~v~~~~~~~g~iD~lVnnAg~~~ 101 (257)
T d1xg5a_ 67 RCDLSNEEDILSMFSAIRSQHSGVDICINNAGLAR 101 (257)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHCCCSEEEECCCCCC
T ss_pred ECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCC
T ss_conf 74589999999999999984688787876353467
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.00 E-value=1.8e-05 Score=49.66 Aligned_cols=80 Identities=20% Similarity=0.298 Sum_probs=64.1
Q ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCC----CCCEEEEEC
Q ss_conf 7899499993-74306999999993799984322223334436778627999988988899998619----996289912
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLD 646 (1053)
Q Consensus 572 ~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d 646 (1053)
.+.|.++|.| ++++|+.+++.|++.| ..|.+.+|+.++++++.+.+ .++..+.+|
T Consensus 9 L~gK~alITGas~GIG~aia~~la~~G--------------------a~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~D 68 (255)
T d1fmca_ 9 LDGKCAIITGAGAGIGKEIAITFATAG--------------------ASVVVSDINADAANHVVDEIQQLGGQAFACRCD 68 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTT--------------------CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 899989993897599999999999879--------------------989999799899999999999739928999845
Q ss_pred CCCHHHHHHHHC-------CCCEEEECCCCCC
Q ss_conf 799778997501-------6609994488521
Q 001559 647 VSDHKSLCKCIS-------QVEIVISLLPASC 671 (1053)
Q Consensus 647 ~~d~~~l~~~i~-------~~DvVI~~~p~~~ 671 (1053)
++|.+.+.++++ ..|++||+.+...
T Consensus 69 vs~~~~~~~~~~~~~~~~g~iDilvnnAG~~~ 100 (255)
T d1fmca_ 69 ITSEQELSALADFAISKLGKVDILVNNAGGGG 100 (255)
T ss_dssp TTCHHHHHHHHHHHHHHHSSCCEEEECCCCCC
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEECCCCCC
T ss_conf 89999999999999997399887443774799
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=97.99 E-value=0.00012 Score=44.25 Aligned_cols=76 Identities=16% Similarity=0.201 Sum_probs=57.5
Q ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC----HHHHHHHHH-CCCCCEEEEECCC
Q ss_conf 9499993-743069999999937999843222233344367786279999889----888999986-1999628991279
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY----LKDAEEVIE-GIPNAEAVQLDVS 648 (1053)
Q Consensus 575 ~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~----~~~a~~l~~-~~~~~~~~~~d~~ 648 (1053)
|||||+| +|++|+.++..|++.+ + +|.+.+|. ......... ...+++.+++|++
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g-~-------------------~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 60 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNG-H-------------------DVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-C-------------------EEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-C-------------------EEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 979998988789999999999784-9-------------------79999788875265677788624788779990168
Q ss_pred CHHHHHHHHC--CCCEEEECCCCC
Q ss_conf 9778997501--660999448852
Q 001559 649 DHKSLCKCIS--QVEIVISLLPAS 670 (1053)
Q Consensus 649 d~~~l~~~i~--~~DvVI~~~p~~ 670 (1053)
|.+.+.+.++ ++|+||+++...
T Consensus 61 d~~~l~~~~~~~~~d~ViHlAa~~ 84 (338)
T d1udca_ 61 NEALMTEILHDHAIDTVIHFAGLK 84 (338)
T ss_dssp CHHHHHHHHHHTTCSEEEECCSCC
T ss_pred CHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 989999987416998999998766
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=97.98 E-value=2.9e-05 Score=48.38 Aligned_cols=77 Identities=19% Similarity=0.240 Sum_probs=58.5
Q ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHHH
Q ss_conf 9499993-743069999999937999843222233344367786279999889888999986199962899127997789
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 575 ~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
|||||.| +|++|+.+++.|++.+. .+|.+.++...+..++.+ .++++.+.+|+++.+.+
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~-------------------~~V~~ld~~~~~~~~~~~-~~~~~~i~~Di~~~~~~ 60 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDH-------------------YEVYGLDIGSDAISRFLN-HPHFHFVEGDISIHSEW 60 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTT-------------------CEEEEEESCCGGGGGGTT-CTTEEEEECCTTTCSHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-------------------CEEEEEECCCCCHHHHCC-CCCEEEEECCCCCHHHH
T ss_conf 9799989875899999999997799-------------------889999689724466536-89809997805785999
Q ss_pred H-HHHCCCCEEEECCCCCC
Q ss_conf 9-75016609994488521
Q 001559 654 C-KCISQVEIVISLLPASC 671 (1053)
Q Consensus 654 ~-~~i~~~DvVI~~~p~~~ 671 (1053)
. ..++++|+|++++....
T Consensus 61 ~~~~~~~~d~Vih~a~~~~ 79 (342)
T d2blla1 61 IEYHVKKCDVVLPLVAIAT 79 (342)
T ss_dssp HHHHHHHCSEEEECBCCCC
T ss_pred HHHHHHCCCCCCCCCCCCC
T ss_conf 9999858982114333322
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=97.98 E-value=9.4e-05 Score=45.04 Aligned_cols=91 Identities=15% Similarity=0.164 Sum_probs=65.3
Q ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHH-HHHCCCCCEEEEECCCCH
Q ss_conf 899499993-743069999999937999843222233344367786279999889888999-986199962899127997
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEE-VIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 573 ~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~-l~~~~~~~~~~~~d~~d~ 650 (1053)
++++|+|+| +|++|+.+++.|.+.| + +|.+..|+..+... .....++++.+..|..|.
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G-~-------------------~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~ 61 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVG-H-------------------HVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNN 61 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTT-C-------------------CEEEEESCSCSHHHHHHHTSTTEEEEESCCTTC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCC-C-------------------EEEEEECCCCHHHHHHHCCCCCCEEEEEECCCC
T ss_conf 98999998987289999999999688-9-------------------699997784200123410048978999558995
Q ss_pred -HHHHHHHCCCCEEEECCCCCCC------HHHHHHHHHHC
Q ss_conf -7899750166099944885211------79999988707
Q 001559 651 -KSLCKCISQVEIVISLLPASCH------VMVANACIEFK 683 (1053)
Q Consensus 651 -~~l~~~i~~~DvVI~~~p~~~~------~~v~~a~i~~g 683 (1053)
+.+..++.++|+++...+.... ..+.++|.++|
T Consensus 62 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~ag 101 (350)
T d1xgka_ 62 VPLMDTLFEGAHLAFINTTSQAGDEIAIGKDLADAAKRAG 101 (350)
T ss_dssp HHHHHHHHTTCSEEEECCCSTTSCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 8999998617845786046300002234369999999819
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.98 E-value=1.5e-05 Score=50.29 Aligned_cols=79 Identities=22% Similarity=0.276 Sum_probs=63.7
Q ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCC-------CCEEE
Q ss_conf 7899499993-743069999999937999843222233344367786279999889888999986199-------96289
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-------NAEAV 643 (1053)
Q Consensus 572 ~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-------~~~~~ 643 (1053)
.+.|.++|.| ++++|+.+++.|++.| ..|.+++|+.++++++.+.+. ++..+
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~G--------------------a~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~ 62 (272)
T d1xkqa_ 3 FSNKTVIITGSSNGIGRTTAILFAQEG--------------------ANVTITGRSSERLEETRQIILKSGVSEKQVNSV 62 (272)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTT--------------------CEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 999889993868699999999999879--------------------989999898899999999999648887746999
Q ss_pred EECCCCHHHHHHHHC-------CCCEEEECCCCC
Q ss_conf 912799778997501-------660999448852
Q 001559 644 QLDVSDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 644 ~~d~~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
.+|++|.+.+.++++ ..|++||..+..
T Consensus 63 ~~Dvs~~~~v~~~~~~~~~~~g~iDilvnnAG~~ 96 (272)
T d1xkqa_ 63 VADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAA 96 (272)
T ss_dssp ECCTTSHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred ECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 7568999999999999999839953999677556
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=97.96 E-value=2.4e-05 Score=48.98 Aligned_cols=81 Identities=19% Similarity=0.205 Sum_probs=64.1
Q ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCC----CCEEEEE
Q ss_conf 87899499993-743069999999937999843222233344367786279999889888999986199----9628991
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP----NAEAVQL 645 (1053)
Q Consensus 571 ~~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~----~~~~~~~ 645 (1053)
+.+.|.++|.| ++++|+.+++.|++.| ..|.+++|+.++++++.+.+. ++..+.+
T Consensus 5 ~L~GK~alITGas~GIG~aia~~la~~G--------------------a~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~ 64 (259)
T d2ae2a_ 5 NLEGCTALVTGGSRGIGYGIVEELASLG--------------------ASVYTCSRNQKELNDCLTQWRSKGFKVEASVC 64 (259)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTT--------------------CEEEEEESCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 8999989992888789999999999879--------------------99999979989999999998735897549992
Q ss_pred CCCCHHHHHHHHC--------CCCEEEECCCCCC
Q ss_conf 2799778997501--------6609994488521
Q 001559 646 DVSDHKSLCKCIS--------QVEIVISLLPASC 671 (1053)
Q Consensus 646 d~~d~~~l~~~i~--------~~DvVI~~~p~~~ 671 (1053)
|++|.+.+.++++ ..|++||..+...
T Consensus 65 Dv~~~~~v~~~~~~~~~~~~~~idilvnnAG~~~ 98 (259)
T d2ae2a_ 65 DLSSRSERQELMNTVANHFHGKLNILVNNAGIVI 98 (259)
T ss_dssp CTTCHHHHHHHHHHHHHHTTTCCCEEEECCCCCC
T ss_pred ECCCHHHHHHHHHHHHHHHCCCCEEEEECCCEEC
T ss_conf 0799999999999999983998408997782304
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=97.96 E-value=9.6e-05 Score=44.98 Aligned_cols=89 Identities=13% Similarity=0.106 Sum_probs=60.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHHHH
Q ss_conf 94999937430699999999379998432222333443677862799998898889999861999628991279977899
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 575 ~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
|||.|||+|.+|..++..|.+.| + +|.+.||+.+++++..+.-. +... .+ + .
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g-~-------------------~V~~~d~~~~~~~~a~~~~~-~~~~-~~--~----~ 52 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRG-H-------------------YLIGVSRQQSTCEKAVERQL-VDEA-GQ--D----L 52 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-C-------------------EEEEECSCHHHHHHHHHTTS-CSEE-ES--C----G
T ss_pred CEEEEEEECHHHHHHHHHHHHCC-C-------------------EEEEEECCCHHHHHHHHHHC-CCEE-EE--E----C
T ss_conf 99999910498999999999789-9-------------------89999898037799998622-4323-22--1----0
Q ss_pred HHHCCCCEEEECCCCCCCHHHHHHHH---HHCCEEEEEEC
Q ss_conf 75016609994488521179999988---70790999513
Q 001559 655 KCISQVEIVISLLPASCHVMVANACI---EFKKHLVTASY 691 (1053)
Q Consensus 655 ~~i~~~DvVI~~~p~~~~~~v~~a~i---~~g~~~vD~sy 691 (1053)
+.++++|+||-++|......+.+... ..++.++|++-
T Consensus 53 ~~~~~~DiIilavp~~~~~~vl~~l~~~l~~~~iv~~~~s 92 (165)
T d2f1ka2 53 SLLQTAKIIFLCTPIQLILPTLEKLIPHLSPTAIVTDVAS 92 (165)
T ss_dssp GGGTTCSEEEECSCHHHHHHHHHHHGGGSCTTCEEEECCS
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCC
T ss_conf 1134554322467276653100123321144442154156
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=97.95 E-value=3.3e-05 Score=48.02 Aligned_cols=76 Identities=24% Similarity=0.317 Sum_probs=60.6
Q ss_pred CEE-EEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCC----CCCEEEEECCC
Q ss_conf 949-9993-74306999999993799984322223334436778627999988988899998619----99628991279
Q 001559 575 SSV-LIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDVS 648 (1053)
Q Consensus 575 ~~v-liiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~~ 648 (1053)
||| +|.| ++++|+.+++.|++.| ..|.+++|+.++++++.+.+ .++..+.+|++
T Consensus 1 KKValITGas~GIG~aia~~la~~G--------------------a~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~ 60 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDG--------------------FAVAIADYNDATAKAVASEINQAGGHAVAVKVDVS 60 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT--------------------CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCEEEECCCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 9899992874399999999999879--------------------98999979899999999999963993899980079
Q ss_pred CHHHHHHHHC-------CCCEEEECCCCC
Q ss_conf 9778997501-------660999448852
Q 001559 649 DHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 649 d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
|.+++.++++ ..|++||..+..
T Consensus 61 ~~~~v~~~~~~~~~~~g~iDilVnnAG~~ 89 (255)
T d1gega_ 61 DRDQVFAAVEQARKTLGGFDVIVNNAGVA 89 (255)
T ss_dssp SHHHHHHHHHHHHHHTTCCCEEEECCCCC
T ss_pred CHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 99999999999999839965899536644
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=97.95 E-value=4.1e-05 Score=47.40 Aligned_cols=81 Identities=22% Similarity=0.284 Sum_probs=63.8
Q ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCC-----CCCEEEE
Q ss_conf 87899499993-74306999999993799984322223334436778627999988988899998619-----9962899
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI-----PNAEAVQ 644 (1053)
Q Consensus 571 ~~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~-----~~~~~~~ 644 (1053)
..++|.++|.| ++++|+++++.|++.| .+|.+++|+.+++++.++.+ .++..+.
T Consensus 22 ~l~gK~alITGas~GIG~aiA~~la~~G--------------------a~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~ 81 (294)
T d1w6ua_ 22 SFQGKVAFITGGGTGLGKGMTTLLSSLG--------------------AQCVIASRKMDVLKATAEQISSQTGNKVHAIQ 81 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTT--------------------CEEEEEESCHHHHHHHHHHHHHHHSSCEEEEE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9899989992888889999999999869--------------------98999979888999999999974299628998
Q ss_pred ECCCCHHHHHHHH-------CCCCEEEECCCCCC
Q ss_conf 1279977899750-------16609994488521
Q 001559 645 LDVSDHKSLCKCI-------SQVEIVISLLPASC 671 (1053)
Q Consensus 645 ~d~~d~~~l~~~i-------~~~DvVI~~~p~~~ 671 (1053)
+|+++.+.+.+.+ ...|++||+.+...
T Consensus 82 ~D~~~~~~v~~~~~~~~~~~g~iDilvnnAg~~~ 115 (294)
T d1w6ua_ 82 CDVRDPDMVQNTVSELIKVAGHPNIVINNAAGNF 115 (294)
T ss_dssp CCTTCHHHHHHHHHHHHHHTCSCSEEEECCCCCC
T ss_pred ECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
T ss_conf 1366757778776555553266321123332113
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.94 E-value=1.1e-05 Score=51.14 Aligned_cols=103 Identities=17% Similarity=0.102 Sum_probs=71.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHH-HCCCCCEEEEECCCCHHHH
Q ss_conf 949999374306999999993799984322223334436778627999988988899998-6199962899127997789
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVI-EGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 575 ~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~-~~~~~~~~~~~d~~d~~~l 653 (1053)
|||.|||.|.+|++++..|.+.+ + ++.+.+++..+..... +... +. +..
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g-~-------------------~v~~~~~~~~~~~~~~~~~~~---~~-------~~~ 50 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRG-V-------------------EVVTSLEGRSPSTIERARTVG---VT-------ETS 50 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTT-C-------------------EEEECCTTCCHHHHHHHHHHT---CE-------ECC
T ss_pred CEEEEECHHHHHHHHHHHHHHCC-C-------------------EEEEECCCHHHHHHHHHHCCC---CC-------CCH
T ss_conf 98999818999999999999879-9-------------------699974851577887641123---21-------348
Q ss_pred HHHHCCCCEEEECCCCCCCHHHHHHHH-HHCCEEEEEECCCHH-HHHHHHHHHHCC
Q ss_conf 975016609994488521179999988-707909995136756-999999999759
Q 001559 654 CKCISQVEIVISLLPASCHVMVANACI-EFKKHLVTASYIDDS-MSKLDEKAKGAG 707 (1053)
Q Consensus 654 ~~~i~~~DvVI~~~p~~~~~~v~~a~i-~~g~~~vD~sy~~~~-~~~L~~~Ak~~G 707 (1053)
.+.++++|+|+.|+|+.....++..+. ..+..++|++-..+. .+.+.+.+++.|
T Consensus 51 ~e~~~~~diIi~~v~~~~~~~~~~~~~~~~~~~~id~st~~p~~~~~l~~~~~~~~ 106 (152)
T d1i36a2 51 EEDVYSCPVVISAVTPGVALGAARRAGRHVRGIYVDINNISPETVRMASSLIEKGG 106 (152)
T ss_dssp HHHHHTSSEEEECSCGGGHHHHHHHHHTTCCSEEEECSCCCHHHHHHHHHHCSSSE
T ss_pred HHHHHHCCEEEEEECCCHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 99986157289983181579999862056874464367679999999999975459
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=4.1e-05 Score=47.40 Aligned_cols=79 Identities=20% Similarity=0.272 Sum_probs=62.8
Q ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCC----C--CCEEEEE
Q ss_conf 899499993-74306999999993799984322223334436778627999988988899998619----9--9628991
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----P--NAEAVQL 645 (1053)
Q Consensus 573 ~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~--~~~~~~~ 645 (1053)
.+|.++|.| ++++|+.+++.|++.| ..|.+++|+.++++++.+.+ + ++..+.+
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~G--------------------a~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~ 61 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKG--------------------AKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQC 61 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT--------------------CEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEEC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 89899993877789999999999879--------------------9899997978889999999987517983789972
Q ss_pred CCCCHHHHHHHHC-------CCCEEEECCCCCC
Q ss_conf 2799778997501-------6609994488521
Q 001559 646 DVSDHKSLCKCIS-------QVEIVISLLPASC 671 (1053)
Q Consensus 646 d~~d~~~l~~~i~-------~~DvVI~~~p~~~ 671 (1053)
|++|.+.+.++++ ..|++||..+...
T Consensus 62 Dv~~~~~v~~~~~~~~~~~G~iDilVnnAg~~~ 94 (254)
T d2gdza1 62 DVADQQQLRDTFRKVVDHFGRLDILVNNAGVNN 94 (254)
T ss_dssp CTTSHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred ECCCHHHHHHHHHHHHHHCCCCCEECCCCCCCC
T ss_conf 069999999999999997399674146643443
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=97.93 E-value=4.3e-05 Score=47.28 Aligned_cols=78 Identities=19% Similarity=0.221 Sum_probs=61.7
Q ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCC----C--CCEEEE
Q ss_conf 7899499993-74306999999993799984322223334436778627999988988899998619----9--962899
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----P--NAEAVQ 644 (1053)
Q Consensus 572 ~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~--~~~~~~ 644 (1053)
.+.|.++|.| ++++|+.+++.|++.| ..|.+++|+.++++++.+.+ + ++..+.
T Consensus 2 l~gK~alITGas~GIG~aia~~la~~G--------------------a~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~ 61 (258)
T d1iy8a_ 2 FTDRVVLITGGGSGLGRATAVRLAAEG--------------------AKLSLVDVSSEGLEASKAAVLETAPDAEVLTTV 61 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT--------------------CEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 999989992888889999999999879--------------------989999787888999999999638997299996
Q ss_pred ECCCCHHHHHHHHC-------CCCEEEECCCC
Q ss_conf 12799778997501-------66099944885
Q 001559 645 LDVSDHKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 645 ~d~~d~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
+|++|.+++.+++. ..|++||..+.
T Consensus 62 ~Dvt~~~~v~~~~~~~~~~~G~iDiLVnnAG~ 93 (258)
T d1iy8a_ 62 ADVSDEAQVEAYVTATTERFGRIDGFFNNAGI 93 (258)
T ss_dssp CCTTSHHHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 55799999999999999982999899989844
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=97.93 E-value=3e-05 Score=48.33 Aligned_cols=78 Identities=19% Similarity=0.168 Sum_probs=64.4
Q ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCC-CCEEEEECCCC
Q ss_conf 7899499993-743069999999937999843222233344367786279999889888999986199-96289912799
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NAEAVQLDVSD 649 (1053)
Q Consensus 572 ~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~~~~~~d~~d 649 (1053)
.+.+.++|.| ++++|+.+++.|++.| .+|.+++|+.++++++.+.++ ++..+.+|+++
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~G--------------------a~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~ 62 (276)
T d1bdba_ 3 LKGEAVLITGGASGLGRALVDRFVAEG--------------------AKVAVLDKSAERLAELETDHGDNVLGIVGDVRS 62 (276)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT--------------------CEEEEEESCHHHHHHHHHHHGGGEEEEECCTTC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 899899992888799999999999889--------------------989999799899999999749974687412350
Q ss_pred HHHHHHHHC-------CCCEEEECCCC
Q ss_conf 778997501-------66099944885
Q 001559 650 HKSLCKCIS-------QVEIVISLLPA 669 (1053)
Q Consensus 650 ~~~l~~~i~-------~~DvVI~~~p~ 669 (1053)
.+.+.+++. ..|++||..+.
T Consensus 63 ~~~~~~~~~~~~~~~g~idilvnnAG~ 89 (276)
T d1bdba_ 63 LEDQKQAASRCVARFGKIDTLIPNAGI 89 (276)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEECCCCC
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 999999999999984896511001244
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.92 E-value=2.3e-05 Score=49.08 Aligned_cols=79 Identities=25% Similarity=0.302 Sum_probs=62.8
Q ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCC-------CCEEE
Q ss_conf 7899499993-743069999999937999843222233344367786279999889888999986199-------96289
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-------NAEAV 643 (1053)
Q Consensus 572 ~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-------~~~~~ 643 (1053)
.++|.++|.| ++++|+.+++.|++.| .+|.+.+|+.++++++.+.+. ++..+
T Consensus 2 L~gK~alITGas~GIG~aia~~la~~G--------------------a~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~ 61 (274)
T d1xhla_ 2 FSGKSVIITGSSNGIGRSAAVIFAKEG--------------------AQVTITGRNEDRLEETKQQILKAGVPAEKINAV 61 (274)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT--------------------CEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 999989993888689999999999879--------------------989999899999999999999748987616899
Q ss_pred EECCCCHHHHHHHHC-------CCCEEEECCCCC
Q ss_conf 912799778997501-------660999448852
Q 001559 644 QLDVSDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 644 ~~d~~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
.+|++|.+.+.++++ ..|++||..+..
T Consensus 62 ~~Dv~~~~~v~~~~~~~~~~~G~iDilVnnAG~~ 95 (274)
T d1xhla_ 62 VADVTEASGQDDIINTTLAKFGKIDILVNNAGAN 95 (274)
T ss_dssp ECCTTSHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred EEECCCHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 8207999999999999999739813998403212
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=97.92 E-value=2.2e-05 Score=49.18 Aligned_cols=80 Identities=24% Similarity=0.228 Sum_probs=62.8
Q ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCC-----CCCEEEE
Q ss_conf 87899499993-74306999999993799984322223334436778627999988988899998619-----9962899
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI-----PNAEAVQ 644 (1053)
Q Consensus 571 ~~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~-----~~~~~~~ 644 (1053)
+.+.|.++|.| ++++|+.+++.|++.| .+|.+++|+.++++++.+.+ .++..+.
T Consensus 6 ~l~gK~alITGas~GIG~aia~~la~~G--------------------a~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~ 65 (260)
T d1h5qa_ 6 SFVNKTIIVTGGNRGIGLAFTRAVAAAG--------------------ANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQ 65 (260)
T ss_dssp CCTTEEEEEETTTSHHHHHHHHHHHHTT--------------------EEEEEEESSCTTHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 2799979992888889999999999879--------------------98999979878899999999997199469998
Q ss_pred ECCCCHHHHHHHHC-------CCCEEEECCCCC
Q ss_conf 12799778997501-------660999448852
Q 001559 645 LDVSDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 645 ~d~~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+|++|.+.+.++++ ..|++||+.+..
T Consensus 66 ~Dv~~~~~v~~~~~~~~~~~g~iDilVnnAg~~ 98 (260)
T d1h5qa_ 66 CDVSNTDIVTKTIQQIDADLGPISGLIANAGVS 98 (260)
T ss_dssp CCTTCHHHHHHHHHHHHHHSCSEEEEEECCCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEECCCCCCC
T ss_conf 448999999999999999829976761443333
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=97.92 E-value=3.2e-05 Score=48.14 Aligned_cols=77 Identities=16% Similarity=0.230 Sum_probs=61.8
Q ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCC----CCCEEEEECCC
Q ss_conf 99499993-74306999999993799984322223334436778627999988988899998619----99628991279
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDVS 648 (1053)
Q Consensus 574 ~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~~ 648 (1053)
+|.++|.| ++++|+.+++.|++.| ..|.+++|+.++++++.+.+ .++..+.+|++
T Consensus 2 gKValITGas~GIG~aia~~la~~G--------------------a~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs 61 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEG--------------------LRVFVCARGEEGLRTTLKELREAGVEADGRTCDVR 61 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTT--------------------CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 9889995898799999999999879--------------------99999989889999999999961994799980069
Q ss_pred CHHHHHHHHC-------CCCEEEECCCCC
Q ss_conf 9778997501-------660999448852
Q 001559 649 DHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 649 d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
|.+++.++++ ..|++||+.+..
T Consensus 62 ~~~~v~~~~~~~~~~~g~iDilVnnAG~~ 90 (257)
T d2rhca1 62 SVPEIEALVAAVVERYGPVDVLVNNAGRP 90 (257)
T ss_dssp CHHHHHHHHHHHHHHTCSCSEEEECCCCC
T ss_pred CHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 99999999999999849987898436656
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.91 E-value=2.8e-05 Score=48.52 Aligned_cols=81 Identities=21% Similarity=0.281 Sum_probs=64.6
Q ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCC----CCEEEEE
Q ss_conf 87899499993-743069999999937999843222233344367786279999889888999986199----9628991
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP----NAEAVQL 645 (1053)
Q Consensus 571 ~~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~----~~~~~~~ 645 (1053)
....|.++|.| ++++|+.+++.|++.| ..|.+++|+.++++++.+.+. ++..+.+
T Consensus 7 ~lenKvalITGas~GIG~a~a~~la~~G--------------------a~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~ 66 (251)
T d2c07a1 7 CGENKVALVTGAGRGIGREIAKMLAKSV--------------------SHVICISRTQKSCDSVVDEIKSFGYESSGYAG 66 (251)
T ss_dssp CCSSCEEEEESTTSHHHHHHHHHHTTTS--------------------SEEEEEESSHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 8899889990888789999999999869--------------------99999979999999999999963994799983
Q ss_pred CCCCHHHHHHHHC-------CCCEEEECCCCCC
Q ss_conf 2799778997501-------6609994488521
Q 001559 646 DVSDHKSLCKCIS-------QVEIVISLLPASC 671 (1053)
Q Consensus 646 d~~d~~~l~~~i~-------~~DvVI~~~p~~~ 671 (1053)
|++|.+.+.++++ ..|++||..+...
T Consensus 67 Dvt~~~~v~~~~~~~~~~~g~iDilvnnag~~~ 99 (251)
T d2c07a1 67 DVSKKEEISEVINKILTEHKNVDILVNNAGITR 99 (251)
T ss_dssp CTTCHHHHHHHHHHHHHHCSCCCEEEECCCCCC
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 389999999999999985498316520133322
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.90 E-value=4.4e-05 Score=47.17 Aligned_cols=130 Identities=14% Similarity=0.111 Sum_probs=82.5
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCH
Q ss_conf 87899499993743069999999937999843222233344367786279999889888999986199962899127997
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
+..+.+|.|+|+|.+|+..+..|.+.+.. ..+.+++....+ + ........ ..+.
T Consensus 4 ~~~k~kv~iIG~G~~g~~h~~~l~~~~~~------------------~~~~~~~~~~~~--~-~~~~~~~~-----~~~~ 57 (172)
T d1lc0a1 4 NSGKFGVVVVGVGRAGSVRLRDLKDPRSA------------------AFLNLIGFVSRR--E-LGSLDEVR-----QISL 57 (172)
T ss_dssp CCCSEEEEEECCSHHHHHHHHHHTSHHHH------------------TTEEEEEEECSS--C-CCEETTEE-----BCCH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCC------------------CEEEEEECCCHH--H-HHHHHCCC-----CCCH
T ss_conf 99875899994789999999999708897------------------489998365157--7-77751667-----4899
Q ss_pred HHHHHHHC--CCCEEEECCCCCCCHHHHHHHHHHCCEEEEEE---CCCHHHHHHHHHHHHCCCEEEECC--CCCHHHHHH
Q ss_conf 78997501--66099944885211799999887079099951---367569999999997598698068--898247899
Q 001559 651 KSLCKCIS--QVEIVISLLPASCHVMVANACIEFKKHLVTAS---YIDDSMSKLDEKAKGAGITILGEM--GLDPGIDHM 723 (1053)
Q Consensus 651 ~~l~~~i~--~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~s---y~~~~~~~L~~~Ak~~Gv~ii~g~--G~dPGi~~m 723 (1053)
.+++. +.|+|+.+||..+|..++..|+++|+|++.-- ....+..++.+.|+++|+.+..+. .++|.+.
T Consensus 58 ---~e~l~~~~iD~V~I~tp~~~H~~~~~~al~~gk~V~~EKP~a~~~~e~~~l~~~a~~~~~~~~v~~~~r~~p~~~-- 132 (172)
T d1lc0a1 58 ---EDALRSQEIDVAYICSESSSHEDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLHEEHVELLKNIFL-- 132 (172)
T ss_dssp ---HHHHHCSSEEEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCEEEECGGGGTTHHH--
T ss_pred ---HHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEECHHHHHHHHH--
T ss_conf ---999718776612202333223332210123212332379863339999999999998099299960899659999--
Q ss_pred HHHHHHHH
Q ss_conf 99999998
Q 001559 724 MAMKMINH 731 (1053)
Q Consensus 724 la~~~~~~ 731 (1053)
.+.+++++
T Consensus 133 ~~k~~i~~ 140 (172)
T d1lc0a1 133 KDQDIFVQ 140 (172)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHC
T ss_conf 99999984
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=7.5e-05 Score=45.70 Aligned_cols=106 Identities=18% Similarity=0.069 Sum_probs=57.5
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CCCCCCEEEE-EE---CCHHHHH----HHHHCCCCCEE
Q ss_conf 78994999937430699999999379998432222333443-6778627999-98---8988899----99861999628
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDF-EWQNDIRVLV-AS---LYLKDAE----EVIEGIPNAEA 642 (1053)
Q Consensus 572 ~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~-~~~~~~~v~v-~~---r~~~~a~----~l~~~~~~~~~ 642 (1053)
.+..||+|+|+|++|..++..|+..| +. ...++|++ .+.+|+.-.+ .. ....|++ ++.+..|++++
T Consensus 35 l~~~kVlvvG~GglG~ei~k~L~~~G-vg----~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i 109 (426)
T d1yovb1 35 LDTCKVLVIGAGGLGCELLKNLALSG-FR----QIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNV 109 (426)
T ss_dssp HHHCCEEEECSSTTHHHHHHHHHTTT-CC----CEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCC
T ss_pred HHCCEEEEECCCHHHHHHHHHHHHCC-CC----EEEEEECCCCCHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCCE
T ss_conf 86696999897889999999999839-97----69999799956312162505895576868999999999851999815
Q ss_pred EEECCCCHHHHHHHHCCCCEEEECCCCCC-CHHHHHHHHHH
Q ss_conf 99127997789975016609994488521-17999998870
Q 001559 643 VQLDVSDHKSLCKCISQVEIVISLLPASC-HVMVANACIEF 682 (1053)
Q Consensus 643 ~~~d~~d~~~l~~~i~~~DvVI~~~p~~~-~~~v~~a~i~~ 682 (1053)
...+..-.+...+.++++|+||+++.... ...+...|+..
T Consensus 110 ~~~~~~i~~~~~~~~~~~DlVi~~~Dn~~aR~~in~~c~~l 150 (426)
T d1yovb1 110 VPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISL 150 (426)
T ss_dssp EEECSCGGGBCHHHHTTCSEEEECCSCHHHHHHHHHHHHHT
T ss_pred EEEECCCCCHHHHHHHHCCHHEECCCCHHHHHHHHHHHHHH
T ss_conf 75413356137999875240100367699999999999985
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=97.90 E-value=0.00011 Score=44.55 Aligned_cols=79 Identities=24% Similarity=0.316 Sum_probs=61.5
Q ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCH-----HHHHHHHHC-CCCCEEEEE
Q ss_conf 899499993-7430699999999379998432222333443677862799998898-----889999861-999628991
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL-----KDAEEVIEG-IPNAEAVQL 645 (1053)
Q Consensus 573 ~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~-----~~a~~l~~~-~~~~~~~~~ 645 (1053)
+++||||+| +|.+|+.+++.|.+.| + +|.+..|+. .+.+.+... ..+++.+.+
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G-~-------------------~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~ 61 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLG-H-------------------PTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEA 61 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTT-C-------------------CEEEECCSCCSSCHHHHHHHHHHHTTTCEEECC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-C-------------------EEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEE
T ss_conf 98999998998789999999999687-9-------------------799998987434656778776520389589995
Q ss_pred CCCCHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 27997789975016609994488521
Q 001559 646 DVSDHKSLCKCISQVEIVISLLPASC 671 (1053)
Q Consensus 646 d~~d~~~l~~~i~~~DvVI~~~p~~~ 671 (1053)
|..|.+.+.+.+++++.++++.+...
T Consensus 62 d~~d~~~~~~~~~~~~~~~~~~~~~~ 87 (312)
T d1qyda_ 62 SLDDHQRLVDALKQVDVVISALAGGV 87 (312)
T ss_dssp CSSCHHHHHHHHTTCSEEEECCCCSS
T ss_pred ECCCCHHHHHHCCCCCHHHHHHHHCC
T ss_conf 41010234554057530222211112
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.89 E-value=2.4e-05 Score=48.89 Aligned_cols=79 Identities=23% Similarity=0.298 Sum_probs=63.4
Q ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCC-----C--CCEEE
Q ss_conf 7899499993-74306999999993799984322223334436778627999988988899998619-----9--96289
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI-----P--NAEAV 643 (1053)
Q Consensus 572 ~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~-----~--~~~~~ 643 (1053)
.+.|.++|.| ++++|+.+++.|++.| .+|.+++|+.++++++.+.+ + ++..+
T Consensus 3 l~gKvalVTGas~GIG~aia~~la~~G--------------------a~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~ 62 (264)
T d1spxa_ 3 FAEKVAIITGSSNGIGRATAVLFAREG--------------------AKVTITGRHAERLEETRQQILAAGVSEQNVNSV 62 (264)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT--------------------CEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 799889993868789999999999879--------------------989999798899999999999657876765899
Q ss_pred EECCCCHHHHHHHHC-------CCCEEEECCCCC
Q ss_conf 912799778997501-------660999448852
Q 001559 644 QLDVSDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 644 ~~d~~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
.+|++|.+.+.++++ ..|++||+.+..
T Consensus 63 ~~Dvt~~~~v~~~~~~~~~~~g~iDilvnnAG~~ 96 (264)
T d1spxa_ 63 VADVTTDAGQDEILSTTLGKFGKLDILVNNAGAA 96 (264)
T ss_dssp ECCTTSHHHHHHHHHHHHHHHSCCCEEEECCC--
T ss_pred ECCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCC
T ss_conf 8327999999999999999809988752366115
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=97.88 E-value=2.4e-05 Score=48.90 Aligned_cols=80 Identities=15% Similarity=0.177 Sum_probs=64.9
Q ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCC-CCEEEEECCCC
Q ss_conf 7899499993-743069999999937999843222233344367786279999889888999986199-96289912799
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NAEAVQLDVSD 649 (1053)
Q Consensus 572 ~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~~~~~~d~~d 649 (1053)
.+.|.++|.| ++++|+.+++.|++.| .+|.+++|+.++++++.+.++ +...+.+|++|
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G--------------------a~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~ 63 (253)
T d1hxha_ 4 LQGKVALVTGGASGVGLEVVKLLLGEG--------------------AKVAFSDINEAAGQQLAAELGERSMFVRHDVSS 63 (253)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT--------------------CEEEEECSCHHHHHHHHHHHCTTEEEECCCTTC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 899889994998789999999999879--------------------999999799999999999838873799832488
Q ss_pred HHHHHHHHC-------CCCEEEECCCCCC
Q ss_conf 778997501-------6609994488521
Q 001559 650 HKSLCKCIS-------QVEIVISLLPASC 671 (1053)
Q Consensus 650 ~~~l~~~i~-------~~DvVI~~~p~~~ 671 (1053)
.+.+.++++ ..|++||..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~iDilVnnAG~~~ 92 (253)
T d1hxha_ 64 EADWTLVMAAVQRRLGTLNVLVNNAGILL 92 (253)
T ss_dssp HHHHHHHHHHHHHHHCSCCEEEECCCCCC
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 89999999999998099875785366568
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=97.87 E-value=7.9e-05 Score=45.54 Aligned_cols=97 Identities=14% Similarity=0.241 Sum_probs=70.4
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCC-CEEEEECCCC
Q ss_conf 878994999937430699999999379998432222333443677862799998898889999861999-6289912799
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPN-AEAVQLDVSD 649 (1053)
Q Consensus 571 ~~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~-~~~~~~d~~d 649 (1053)
..+..+|+|||+|-+|..++..+...| .+|++.|.+.++.+++...+++ ++.. ..+
T Consensus 29 gv~pa~V~ViGaGvaG~~A~~~A~~lG--------------------A~V~~~D~~~~~l~~l~~~~~~~~~~~---~~~ 85 (168)
T d1pjca1 29 GVKPGKVVILGGGVVGTEAAKMAVGLG--------------------AQVQIFDINVERLSYLETLFGSRVELL---YSN 85 (168)
T ss_dssp TBCCCEEEEECCSHHHHHHHHHHHHTT--------------------CEEEEEESCHHHHHHHHHHHGGGSEEE---ECC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHCCCCEEE---HHH
T ss_conf 988707999888859999999974089--------------------899997376889999998516651442---222
Q ss_pred HHHHHHHHCCCCEEEECC--CCCCCHHH----HHHHHHHCCEEEEEE
Q ss_conf 778997501660999448--85211799----999887079099951
Q 001559 650 HKSLCKCISQVEIVISLL--PASCHVMV----ANACIEFKKHLVTAS 690 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~--p~~~~~~v----~~a~i~~g~~~vD~s 690 (1053)
.+.+.+.++++|+||+++ |..-.+.+ .-.-.+.|..+||++
T Consensus 86 ~~~l~~~~~~aDivI~aalipG~~aP~lIt~~mv~~Mk~GSVIVDva 132 (168)
T d1pjca1 86 SAEIETAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVA 132 (168)
T ss_dssp HHHHHHHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred HHHHHHHHCCCCEEEEEEECCCCCCCEEECHHHHHHCCCCCEEEEEE
T ss_conf 11477763057689982021886467442598995158996899844
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.87 E-value=0.0001 Score=44.86 Aligned_cols=76 Identities=17% Similarity=0.187 Sum_probs=62.0
Q ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHH
Q ss_conf 99499993-74306999999993799984322223334436778627999988988899998619996289912799778
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
+++|||.| +|++|+.+++.|++.|. ...+....|++++.+.+ ..+++.+.+|.++.+.
T Consensus 3 ~~tVlVtGatG~iG~~l~~~Ll~~g~------------------~v~v~~~~R~~~~~~~~---~~~~~~~~~d~~~~~~ 61 (252)
T d2q46a1 3 LPTVLVTGASGRTGQIVYKKLKEGSD------------------KFVAKGLVRSAQGKEKI---GGEADVFIGDITDADS 61 (252)
T ss_dssp CCEEEEESTTSTTHHHHHHHHHHTTT------------------TCEEEEEESCHHHHHHT---TCCTTEEECCTTSHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC------------------CEEEEEECCCHHHHHHC---CCCCEEEEEEECCCCC
T ss_conf 88899989865899999999997799------------------37999972787788755---5782899853012332
Q ss_pred HHHHHCCCCEEEECCCCC
Q ss_conf 997501660999448852
Q 001559 653 LCKCISQVEIVISLLPAS 670 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~ 670 (1053)
+.+.++++|.|+++....
T Consensus 62 ~~~~~~~~d~vi~~a~~~ 79 (252)
T d2q46a1 62 INPAFQGIDALVILTSAV 79 (252)
T ss_dssp HHHHHTTCSEEEECCCCC
T ss_pred CCCCCCCCEEEEEEEEEC
T ss_conf 323212100258998502
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=6.2e-05 Score=46.22 Aligned_cols=78 Identities=13% Similarity=0.160 Sum_probs=61.3
Q ss_pred CCEEEEE-C-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCC----CCCEEEEECC
Q ss_conf 9949999-3-74306999999993799984322223334436778627999988988899998619----9962899127
Q 001559 574 TSSVLII-G-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDV 647 (1053)
Q Consensus 574 ~~~vlii-G-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~ 647 (1053)
++||.|| | ++++|+.+++.|++.+. ..|.+++|+.++++++++.+ +++..+.+|+
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g-------------------~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv 62 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFS-------------------GDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDI 62 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSS-------------------SEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCT
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHCC-------------------CEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf 786999878887899999999998189-------------------9999997988999999999984599679999752
Q ss_pred CCHHHHHHHHC-------CCCEEEECCCCC
Q ss_conf 99778997501-------660999448852
Q 001559 648 SDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 648 ~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+|.++..++++ ..|++||..+..
T Consensus 63 s~~~sv~~~~~~~~~~~g~iDiLVnNAGi~ 92 (275)
T d1wmaa1 63 DDLQSIRALRDFLRKEYGGLDVLVNNAGIA 92 (275)
T ss_dssp TCHHHHHHHHHHHHHHHSSEEEEEECCCCC
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 788999999999998669807999857767
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.84 E-value=3.4e-05 Score=47.93 Aligned_cols=81 Identities=19% Similarity=0.183 Sum_probs=64.0
Q ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCC----CCCEEEEE
Q ss_conf 87899499993-74306999999993799984322223334436778627999988988899998619----99628991
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQL 645 (1053)
Q Consensus 571 ~~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~ 645 (1053)
+.+.|.++|.| ++++|+.+++.|++.| ..|.+++|+.++++++.+.+ .++....+
T Consensus 5 ~LkgK~alVTGas~GIG~aiA~~la~~G--------------------a~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~ 64 (259)
T d1xq1a_ 5 SLKAKTVLVTGGTKGIGHAIVEEFAGFG--------------------AVIHTCARNEYELNECLSKWQKKGFQVTGSVC 64 (259)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTT--------------------CEEEEEESCHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 7799989993888789999999999879--------------------99999979999999999997732881689966
Q ss_pred CCCCHHHHHHHHC--------CCCEEEECCCCCC
Q ss_conf 2799778997501--------6609994488521
Q 001559 646 DVSDHKSLCKCIS--------QVEIVISLLPASC 671 (1053)
Q Consensus 646 d~~d~~~l~~~i~--------~~DvVI~~~p~~~ 671 (1053)
|+++.+.+.++++ ..|++||+.+...
T Consensus 65 Dv~~~~~v~~~~~~~~~~~~g~idilvnnAG~~~ 98 (259)
T d1xq1a_ 65 DASLRPEREKLMQTVSSMFGGKLDILINNLGAIR 98 (259)
T ss_dssp CTTSHHHHHHHHHHHHHHHTTCCSEEEEECCC--
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 5799999999999999984897255314652169
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.80 E-value=0.00012 Score=44.26 Aligned_cols=77 Identities=18% Similarity=0.172 Sum_probs=59.4
Q ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCH
Q ss_conf 7899499993-743069999999937999843222233344367786279999889888999986199962899127997
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 572 ~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
.+.|||||.| +|.+|+.++..|.+.| . +|.+.++.... .........+...+|..+.
T Consensus 13 ~~nMKILVTGgsGfIGs~lv~~L~~~g-~-------------------~V~~~d~~~~~--~~~~~~~~~~~~~~D~~~~ 70 (363)
T d2c5aa1 13 SENLKISITGAGGFIASHIARRLKHEG-H-------------------YVIASDWKKNE--HMTEDMFCDEFHLVDLRVM 70 (363)
T ss_dssp TSCCEEEEETTTSHHHHHHHHHHHHTT-C-------------------EEEEEESSCCS--SSCGGGTCSEEEECCTTSH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-C-------------------EEEEEECCCCC--CHHHHCCCCCEEEEECHHH
T ss_conf 789879997888789999999999782-9-------------------89999689852--1134235672799351558
Q ss_pred HHHHHHHCCCCEEEECCCCC
Q ss_conf 78997501660999448852
Q 001559 651 KSLCKCISQVEIVISLLPAS 670 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~ 670 (1053)
+.+.+.+.++|.||++....
T Consensus 71 ~~~~~~~~~~d~Vih~a~~~ 90 (363)
T d2c5aa1 71 ENCLKVTEGVDHVFNLAADM 90 (363)
T ss_dssp HHHHHHHTTCSEEEECCCCC
T ss_pred HHHHHHHHCCCEEEECCCCC
T ss_conf 98998761487673102332
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=97.76 E-value=0.00013 Score=44.20 Aligned_cols=79 Identities=23% Similarity=0.235 Sum_probs=61.4
Q ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHH-HHHHHHHCCC-CCEEEEECCC
Q ss_conf 7899499993-74306999999993799984322223334436778627999988988-8999986199-9628991279
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK-DAEEVIEGIP-NAEAVQLDVS 648 (1053)
Q Consensus 572 ~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~-~a~~l~~~~~-~~~~~~~d~~ 648 (1053)
.+.|.++|.| ++++|+.+++.|++.| ..|.+++|+.. .+++..+..+ ++..+.+|++
T Consensus 3 L~gKvalVTGas~GIG~aia~~la~~G--------------------a~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs 62 (247)
T d2ew8a1 3 LKDKLAVITGGANGIGRAIAERFAVEG--------------------ADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVS 62 (247)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT--------------------CEEEEEESSCCHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCCHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 998989993888889999999999879--------------------999999798318999999975996799982079
Q ss_pred CHHHHHHHHC-------CCCEEEECCCCC
Q ss_conf 9778997501-------660999448852
Q 001559 649 DHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 649 d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
|.+++.++++ ..|++||..+..
T Consensus 63 ~~~~v~~~~~~~~~~~G~iDilVnnAG~~ 91 (247)
T d2ew8a1 63 QPGDVEAFGKQVISTFGRCDILVNNAGIY 91 (247)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 99999999999999739987999899889
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=97.76 E-value=0.00012 Score=44.46 Aligned_cols=75 Identities=23% Similarity=0.209 Sum_probs=58.1
Q ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCH-----HHHHHHHH----CCCCCEEEE
Q ss_conf 9499993-7430699999999379998432222333443677862799998898-----88999986----199962899
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL-----KDAEEVIE----GIPNAEAVQ 644 (1053)
Q Consensus 575 ~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~-----~~a~~l~~----~~~~~~~~~ 644 (1053)
|.|||.| +|.+|+.++++|.+.| . +|.+++|.. .+.+.+.. ..++++.+.
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g-~-------------------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKG-Y-------------------EVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHY 61 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-C-------------------EEEEECC---------------------CCEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-C-------------------EEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 889996888689999999999786-9-------------------89999789755555668888740330389759998
Q ss_pred ECCCCHHHHHHHHCCC--CEEEECCCC
Q ss_conf 1279977899750166--099944885
Q 001559 645 LDVSDHKSLCKCISQV--EIVISLLPA 669 (1053)
Q Consensus 645 ~d~~d~~~l~~~i~~~--DvVI~~~p~ 669 (1053)
+|++|.+.+.+.++++ |+|+++...
T Consensus 62 ~Dl~d~~~~~~~~~~~~~d~v~h~aa~ 88 (357)
T d1db3a_ 62 GDLSDTSNLTRILREVQPDEVYNLGAM 88 (357)
T ss_dssp CCSSCHHHHHHHHHHHCCSEEEECCCC
T ss_pred EECCCHHHHHHHHHCCCCCEEEEEECC
T ss_conf 206797998888752598789985203
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.76 E-value=3.2e-05 Score=48.15 Aligned_cols=87 Identities=20% Similarity=0.269 Sum_probs=64.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHHHH
Q ss_conf 94999937430699999999379998432222333443677862799998898889999861999628991279977899
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 575 ~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
||+.+||+|.+|++++..|.+.+ .++.+++|+.++++++.+.++ +.+ . .+..
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~--------------------~~i~v~~r~~~~~~~l~~~~g-~~~----~---~~~~ 52 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTP--------------------HELIISGSSLERSKEIAEQLA-LPY----A---MSHQ 52 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSS--------------------CEEEEECSSHHHHHHHHHHHT-CCB----C---SSHH
T ss_pred CEEEEEECCHHHHHHHHHHHHCC--------------------CEEEEECCHHHHHHHHCCCCC-EEE----E---CHHH
T ss_conf 98999904399999999998589--------------------818998271776776312322-002----0---1013
Q ss_pred HHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEE
Q ss_conf 750166099944885211799999887079099951
Q 001559 655 KCISQVEIVISLLPASCHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 655 ~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~s 690 (1053)
+.++++|+|+-|+++.....+.. .+..++.++++.
T Consensus 53 ~~~~~~dvIilavkp~~~~~vl~-~l~~~~~iis~~ 87 (152)
T d2ahra2 53 DLIDQVDLVILGIKPQLFETVLK-PLHFKQPIISMA 87 (152)
T ss_dssp HHHHTCSEEEECSCGGGHHHHHT-TSCCCSCEEECC
T ss_pred HHHHCCCEEEEECCHHHHHHHHH-HCCCCEEEECCC
T ss_conf 32202430455020576777763-134532675054
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=97.74 E-value=7.3e-05 Score=45.75 Aligned_cols=97 Identities=15% Similarity=0.118 Sum_probs=62.9
Q ss_pred CCCEEEEECCCHHHHHH-HHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHH-HHHHHHHCCCCCEEEEECCCCH
Q ss_conf 89949999374306999-999993799984322223334436778627999988988-8999986199962899127997
Q 001559 573 GTSSVLIIGAGRVCRPA-AELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK-DAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 573 ~~~~vliiGaG~vg~~i-a~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~-~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
++.|+.|+|+|++|+.. ...|...+.+ .-+.+++|+.+ +....++... +... ....
T Consensus 3 kkirvaIIGaG~ig~~~~~~~l~~~~~~------------------el~avas~~~~~~~~~~a~~~~-i~~~---~~~~ 60 (157)
T d1nvmb1 3 QKLKVAIIGSGNIGTDLMIKVLRNAKYL------------------EMGAMVGIDAASDGLARAQRMG-VTTT---YAGV 60 (157)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHCSSE------------------EEEEEECSCTTCHHHHHHHHTT-CCEE---SSHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCC------------------EEEEEEECCHHCCCHHHHHHCC-CCCC---CCCE
T ss_conf 8767999868599999999999619865------------------5999985533203103566539-7400---0561
Q ss_pred HHHHHH--HCCCCEEEECCCCCCCHHHH--HHHHHHCCEEEEEEC
Q ss_conf 789975--01660999448852117999--998870790999513
Q 001559 651 KSLCKC--ISQVEIVISLLPASCHVMVA--NACIEFKKHLVTASY 691 (1053)
Q Consensus 651 ~~l~~~--i~~~DvVI~~~p~~~~~~v~--~a~i~~g~~~vD~sy 691 (1053)
+.+.+. ..+.|+|+.+||.+.|.... ....++|++++|.+.
T Consensus 61 d~l~~~~~~~~iDiVf~ATpag~h~~~~~~~~aa~~G~~VID~s~ 105 (157)
T d1nvmb1 61 EGLIKLPEFADIDFVFDATSASAHVQNEALLRQAKPGIRLIDLTP 105 (157)
T ss_dssp HHHHHSGGGGGEEEEEECSCHHHHHHHHHHHHHHCTTCEEEECST
T ss_pred EEEEECCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 566502455546889982784358881888999875988998146
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=97.74 E-value=0.00073 Score=39.22 Aligned_cols=115 Identities=18% Similarity=0.137 Sum_probs=80.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHC--CCCCEEEEECCCCHH
Q ss_conf 994999937430699999999379998432222333443677862799998898889999861--999628991279977
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEG--IPNAEAVQLDVSDHK 651 (1053)
Q Consensus 574 ~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~--~~~~~~~~~d~~d~~ 651 (1053)
+-.++|+|+|.+|+.+++.|.+.+ ..+.+.+.++++..+..+. ..++.++.+|.+|.+
T Consensus 3 knHiII~G~g~~g~~l~~~L~~~~--------------------~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~ 62 (153)
T d1id1a_ 3 KDHFIVCGHSILAINTILQLNQRG--------------------QNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSS 62 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTT--------------------CCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--------------------CCEEEEECCCHHHHHHHHHHHCCCCEEEECCCCCHH
T ss_conf 887999898889999999999769--------------------987999533055899999853399689990686467
Q ss_pred HHH-HHHCCCCEEEECCCCCCC-HHHHHHHHH--HCCEEEEEECCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 899-750166099944885211-799999887--0790999513675699999999975986980
Q 001559 652 SLC-KCISQVEIVISLLPASCH-VMVANACIE--FKKHLVTASYIDDSMSKLDEKAKGAGITILG 712 (1053)
Q Consensus 652 ~l~-~~i~~~DvVI~~~p~~~~-~~v~~a~i~--~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~ii~ 712 (1053)
.|. ..+.++|.||.+++.... ..+...+-+ ...+++-.+..+... +..++.|+..+.
T Consensus 63 ~L~~a~i~~a~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia~~~~~~~~----~~l~~~Gad~vi 123 (153)
T d1id1a_ 63 VLKKAGIDRCRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDSKNL----NKIKMVHPDIIL 123 (153)
T ss_dssp HHHHHTTTTCSEEEECSSCHHHHHHHHHHHHHHTSSSCEEEECSSGGGH----HHHHTTCCSEEE
T ss_pred HHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHH----HHHHHCCCCEEE
T ss_conf 7977354028799990454888889999999858987369997698899----999977999999
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.72 E-value=0.0001 Score=44.77 Aligned_cols=79 Identities=16% Similarity=0.141 Sum_probs=62.1
Q ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCC-CCEEEEECCCCHH
Q ss_conf 99499993-743069999999937999843222233344367786279999889888999986199-9628991279977
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NAEAVQLDVSDHK 651 (1053)
Q Consensus 574 ~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~~~~~~d~~d~~ 651 (1053)
.+.|+|.| ++++|+.+++.|++.|.. ..|.+.+|+.++++++.+..+ ++.++.+|++|.+
T Consensus 3 ~KtilITGassGIG~a~a~~la~~G~~------------------~~Vi~~~R~~~~~~~l~~~~~~~~~~~~~Dvs~~~ 64 (250)
T d1yo6a1 3 PGSVVVTGANRGIGLGLVQQLVKDKNI------------------RHIIATARDVEKATELKSIKDSRVHVLPLTVTCDK 64 (250)
T ss_dssp CSEEEESSCSSHHHHHHHHHHHTCTTC------------------CEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCC------------------CEEEEEECCHHHHHHHHHHHCCCEEEEEEECCCHH
T ss_conf 898999589879999999999977998------------------78999969999999998720896699998468999
Q ss_pred HHHHHHC---------CCCEEEECCCCC
Q ss_conf 8997501---------660999448852
Q 001559 652 SLCKCIS---------QVEIVISLLPAS 670 (1053)
Q Consensus 652 ~l~~~i~---------~~DvVI~~~p~~ 670 (1053)
++.++++ ..|++||+.+..
T Consensus 65 ~v~~~~~~i~~~~~~~~idilinnAG~~ 92 (250)
T d1yo6a1 65 SLDTFVSKVGEIVGSDGLSLLINNAGVL 92 (250)
T ss_dssp HHHHHHHHHHHHHGGGCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 9999999999995899848999767656
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=97.72 E-value=0.00039 Score=40.99 Aligned_cols=97 Identities=24% Similarity=0.260 Sum_probs=69.4
Q ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHH------HHHHHHHC-CCCCEEEEE
Q ss_conf 99499993-74306999999993799984322223334436778627999988988------89999861-999628991
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK------DAEEVIEG-IPNAEAVQL 645 (1053)
Q Consensus 574 ~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~------~a~~l~~~-~~~~~~~~~ 645 (1053)
++||||+| +|.+|+.+++.|.+.| + +|.+.+|+.. +...+... ..+++++..
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G-~-------------------~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLG-H-------------------PTFLLVRESTASSNSEKAQLLESFKASGANIVHG 62 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTT-C-------------------CEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-C-------------------EEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEE
T ss_conf 8989998998689999999999788-9-------------------6999988875443266777777642488289991
Q ss_pred CCCCHHHHHHHHCCCCEEEECCCCCCC---HHHHHHHHHHCC-EEEEEE
Q ss_conf 279977899750166099944885211---799999887079-099951
Q 001559 646 DVSDHKSLCKCISQVEIVISLLPASCH---VMVANACIEFKK-HLVTAS 690 (1053)
Q Consensus 646 d~~d~~~l~~~i~~~DvVI~~~p~~~~---~~v~~a~i~~g~-~~vD~s 690 (1053)
|+.+...+.+.+.+++.|+++.+.... ..+.+++.+++. .++-.+
T Consensus 63 d~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~a~~~~~~~~~~~~s 111 (307)
T d1qyca_ 63 SIDDHASLVEAVKNVDVVISTVGSLQIESQVNIIKAIKEVGTVKRFFPS 111 (307)
T ss_dssp CTTCHHHHHHHHHTCSEEEECCCGGGSGGGHHHHHHHHHHCCCSEEECS
T ss_pred ECCCCHHHHHHHHHCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 0100023444430011454203543220136788999974233310011
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=7.3e-05 Score=45.77 Aligned_cols=79 Identities=16% Similarity=0.170 Sum_probs=59.7
Q ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCHH
Q ss_conf 899499993-7430699999999379998432222333443677862799998898889999861999628991279977
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 573 ~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
++++|+|.| +|.+|+.+++.|.+.+.+ .+|.+.+|++.+... ....++....+|..+.+
T Consensus 13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~------------------~~v~~~~R~~~~~~~--~~~~~i~~~~~D~~~~~ 72 (232)
T d2bkaa1 13 QNKSVFILGASGETGRVLLKEILEQGLF------------------SKVTLIGRRKLTFDE--EAYKNVNQEVVDFEKLD 72 (232)
T ss_dssp TCCEEEEECTTSHHHHHHHHHHHHHTCC------------------SEEEEEESSCCCCCS--GGGGGCEEEECCGGGGG
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCC------------------CEEEEEECCHHHHCC--CCCCEEEEEEECCCCCC
T ss_conf 9998999889838999999999967998------------------779998668122011--12321455530233111
Q ss_pred HHHHHHCCCCEEEECCCCCC
Q ss_conf 89975016609994488521
Q 001559 652 SLCKCISQVEIVISLLPASC 671 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~~~ 671 (1053)
++.+.++++|+|+++++...
T Consensus 73 ~~~~~~~~~d~vi~~~~~~~ 92 (232)
T d2bkaa1 73 DYASAFQGHDVGFCCLGTTR 92 (232)
T ss_dssp GGGGGGSSCSEEEECCCCCH
T ss_pred CCCCCCCCCCCCCCCCCCCC
T ss_conf 11111122322223334323
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=97.70 E-value=0.00024 Score=42.41 Aligned_cols=76 Identities=18% Similarity=0.239 Sum_probs=58.0
Q ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC--HHHHH--HHHHCCCCCEEEEECCCC
Q ss_conf 9499993-743069999999937999843222233344367786279999889--88899--998619996289912799
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY--LKDAE--EVIEGIPNAEAVQLDVSD 649 (1053)
Q Consensus 575 ~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~--~~~a~--~l~~~~~~~~~~~~d~~d 649 (1053)
.||||.| +|.+|+.+++.|.++| . +|.+.++- ..+.. ......++++.+.+|++|
T Consensus 1 ~KILVTGatGfIGs~lv~~Ll~~g-~-------------------~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~ 60 (338)
T d1orra_ 1 AKLLITGGCGFLGSNLASFALSQG-I-------------------DLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRN 60 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-C-------------------EEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-C-------------------EEEEEECCCCCCCHHHHHHHHCCCCCEEEECCCCC
T ss_conf 979998987289999999999783-9-------------------89999798866516678875116981899861689
Q ss_pred HHHHHHHHCCC--CEEEECCCCC
Q ss_conf 77899750166--0999448852
Q 001559 650 HKSLCKCISQV--EIVISLLPAS 670 (1053)
Q Consensus 650 ~~~l~~~i~~~--DvVI~~~p~~ 670 (1053)
.+.+.+.++++ |+||++....
T Consensus 61 ~~~l~~~~~~~~~d~Vih~aa~~ 83 (338)
T d1orra_ 61 KNDVTRLITKYMPDSCFHLAGQV 83 (338)
T ss_dssp HHHHHHHHHHHCCSEEEECCCCC
T ss_pred HHHHHHHHHHCCCCEEEEECCCC
T ss_conf 89999999735774699603432
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=97.70 E-value=1.7e-05 Score=49.91 Aligned_cols=118 Identities=10% Similarity=0.100 Sum_probs=81.9
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCC---CCEEEEECCC
Q ss_conf 7899499993743069999999937999843222233344367786279999889888999986199---9628991279
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP---NAEAVQLDVS 648 (1053)
Q Consensus 572 ~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~---~~~~~~~d~~ 648 (1053)
+..+++.|||+|..++.-++.+...-+. .+|.|.+|++++++++++.+. ++++..+
T Consensus 126 ~da~~l~iiG~G~QA~~~~~a~~~v~~i------------------~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~--- 184 (340)
T d1x7da_ 126 PNARKMALIGNGAQSEFQALAFHKHLGI------------------EEIVAYDTDPLATAKLIANLKEYSGLTIRRA--- 184 (340)
T ss_dssp TTCCEEEEECCSTTHHHHHHHHHHHSCC------------------CEEEEECSSHHHHHHHHHHHTTCTTCEEEEC---
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCE------------------EEEEEEECCHHHHHHHHHHHHHCCCCCCEEC---
T ss_conf 6985489973628789999998631230------------------3568984676778999986420068774554---
Q ss_pred CHHHHHHHHCCCCEEEECCCCCC-CHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 97789975016609994488521-17999998870790999513675699999999975986980
Q 001559 649 DHKSLCKCISQVEIVISLLPASC-HVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILG 712 (1053)
Q Consensus 649 d~~~l~~~i~~~DvVI~~~p~~~-~~~v~~a~i~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~ii~ 712 (1053)
+++.+.++++|+|+.||...- .+.+...+++.|+|+.-+....+.+++++...-++...++.
T Consensus 185 --~s~~eav~~ADIi~t~Tas~s~~Pv~~~~~l~pG~hI~aiGs~~p~~~Eld~~~l~~a~v~VD 247 (340)
T d1x7da_ 185 --SSVAEAVKGVDIITTVTADKAYATIITPDMLEPGMHLNAVGGDCPGKTELHADVLRNARVFVE 247 (340)
T ss_dssp --SSHHHHHTTCSEEEECCCCSSEEEEECGGGCCTTCEEEECSCCBTTBEEECHHHHHTSEEEES
T ss_pred --CCHHHHHHCCCCEEECCCCCCCCCCCCHHHCCCCCEEEECCCCHHHHHCCCHHHHHCCCEEEE
T ss_conf --999999740870000246677776035411589878862365312322068878855929995
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.69 E-value=4.4e-05 Score=47.20 Aligned_cols=109 Identities=24% Similarity=0.245 Sum_probs=77.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHHHHH
Q ss_conf 49999374306999999993799984322223334436778627999988988899998619996289912799778997
Q 001559 576 SVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLCK 655 (1053)
Q Consensus 576 ~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~~ 655 (1053)
||.+||.|.+|.++++.|.+.+ .+.+++|+.++++++.+.... .. ...+
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~g---------------------~~~~~~~~~~~~~~~~~~~~~-~~---------~~~~ 50 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARRF---------------------PTLVWNRTFEKALRHQEEFGS-EA---------VPLE 50 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTTS---------------------CEEEECSSTHHHHHHHHHHCC-EE---------CCGG
T ss_pred EEEEEEHHHHHHHHHHHHHHCC---------------------CEEEEECCHHHHHHHHHHCCC-CC---------CCCC
T ss_conf 0999958998999999999679---------------------879996887999999997097-51---------1122
Q ss_pred HHCCCCEEEECCCCCCC-HHHHHHH---HHHCCEEEEEECCCH-HHHHHHHHHHHCCCEEEECCCC
Q ss_conf 50166099944885211-7999998---870790999513675-6999999999759869806889
Q 001559 656 CISQVEIVISLLPASCH-VMVANAC---IEFKKHLVTASYIDD-SMSKLDEKAKGAGITILGEMGL 716 (1053)
Q Consensus 656 ~i~~~DvVI~~~p~~~~-~~v~~a~---i~~g~~~vD~sy~~~-~~~~L~~~Ak~~Gv~ii~g~G~ 716 (1053)
.+.++|++|.++|..-. ..+.... ...+..++|.+...+ ...++.+.++++|+.++. +.+
T Consensus 51 ~~~~~~~~i~~~~~~~~v~~~~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~ld-apV 115 (156)
T d2cvza2 51 RVAEARVIFTCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLD-APV 115 (156)
T ss_dssp GGGGCSEEEECCSSHHHHHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEE-CCE
T ss_pred CCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE-CCC
T ss_conf 34420478730420145454312653111233321233557988999999999985990893-566
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=97.68 E-value=0.00021 Score=42.74 Aligned_cols=77 Identities=23% Similarity=0.337 Sum_probs=60.6
Q ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCH
Q ss_conf 7899499993-743069999999937999843222233344367786279999889888999986199962899127997
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 572 ~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
.++|.++|.| ++++|+.+++.|++.| .+|.+++|+.+.. ++++... ...+.+|++|.
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~G--------------------~~V~~~~~~~~~~-~~~~~~~-~~~~~~Dv~~~ 60 (248)
T d2d1ya1 3 FAGKGVLVTGGARGIGRAIAQAFAREG--------------------ALVALCDLRPEGK-EVAEAIG-GAFFQVDLEDE 60 (248)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT--------------------CEEEEEESSTTHH-HHHHHHT-CEEEECCTTCH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHH-HHHHHCC-CEEEEEECCCH
T ss_conf 699879993898789999999999879--------------------9999997887899-9998759-93999857999
Q ss_pred HHHHHHHC-------CCCEEEECCCCC
Q ss_conf 78997501-------660999448852
Q 001559 651 KSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 651 ~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+++.++++ ..|++||..+..
T Consensus 61 ~~v~~~~~~~~~~~G~iDiLVnnAG~~ 87 (248)
T d2d1ya1 61 RERVRFVEEAAYALGRVDVLVNNAAIA 87 (248)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 999999999998559988389969179
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.67 E-value=0.0013 Score=37.53 Aligned_cols=76 Identities=21% Similarity=0.232 Sum_probs=55.8
Q ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC----HHHHHHHHH-CCCCCEEEEECCC
Q ss_conf 9499993-743069999999937999843222233344367786279999889----888999986-1999628991279
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY----LKDAEEVIE-GIPNAEAVQLDVS 648 (1053)
Q Consensus 575 ~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~----~~~a~~l~~-~~~~~~~~~~d~~ 648 (1053)
|.|||.| +|++|+.++..|++.+ + +|.+.++- ......... ...+++.+.+|++
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g-~-------------------~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~ 61 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENG-Y-------------------DCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLC 61 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-C-------------------EEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-C-------------------EEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 899991887479999999999786-9-------------------59999788876266777677641368759996467
Q ss_pred CHHHHHHHHC--CCCEEEECCCCC
Q ss_conf 9778997501--660999448852
Q 001559 649 DHKSLCKCIS--QVEIVISLLPAS 670 (1053)
Q Consensus 649 d~~~l~~~i~--~~DvVI~~~p~~ 670 (1053)
|.+.+.+++. +.|+|+++....
T Consensus 62 d~~~l~~~~~~~~~d~VihlAa~~ 85 (347)
T d1z45a2 62 DRKGLEKVFKEYKIDSVIHFAGLK 85 (347)
T ss_dssp CHHHHHHHHHHSCCCEEEECCSCC
T ss_pred CHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 879999877504997887853155
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=97.67 E-value=5.5e-05 Score=46.54 Aligned_cols=80 Identities=20% Similarity=0.170 Sum_probs=62.4
Q ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHH---CCCCCEEEEECC
Q ss_conf 7899499993-743069999999937999843222233344367786279999889888999986---199962899127
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIE---GIPNAEAVQLDV 647 (1053)
Q Consensus 572 ~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~---~~~~~~~~~~d~ 647 (1053)
.+.|||||.| +|++|+.+++.|.+.| .+|.+.+|+..+...+.+ ..++++.+.+|+
T Consensus 6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g--------------------~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl 65 (356)
T d1rkxa_ 6 WQGKRVFVTGHTGFKGGWLSLWLQTMG--------------------ATVKGYSLTAPTVPSLFETARVADGMQSEIGDI 65 (356)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHTT--------------------CEEEEEESSCSSSSCHHHHTTTTTTSEEEECCT
T ss_pred HCCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCCCCCHHHHHHHHCCCCCEEEEEEC
T ss_conf 188989997888779999999999779--------------------989999789986177776640146876998405
Q ss_pred CCHHHHHHHHCC--CCEEEECCCCCC
Q ss_conf 997789975016--609994488521
Q 001559 648 SDHKSLCKCISQ--VEIVISLLPASC 671 (1053)
Q Consensus 648 ~d~~~l~~~i~~--~DvVI~~~p~~~ 671 (1053)
+|.+.+.+.+.. .|+|++++....
T Consensus 66 ~d~~~l~~~~~~~~~~~v~~~aa~~~ 91 (356)
T d1rkxa_ 66 RDQNKLLESIREFQPEIVFHMAAQPL 91 (356)
T ss_dssp TCHHHHHHHHHHHCCSEEEECCSCCC
T ss_pred CCHHHHHHHHHHCHHHHHHHHHCCCC
T ss_conf 68576002343020244444421565
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=97.67 E-value=0.00011 Score=44.58 Aligned_cols=80 Identities=21% Similarity=0.224 Sum_probs=61.0
Q ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCH-HHHHHHHHCC----CCCEEEE
Q ss_conf 87899499993-7430699999999379998432222333443677862799998898-8899998619----9962899
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL-KDAEEVIEGI----PNAEAVQ 644 (1053)
Q Consensus 571 ~~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~-~~a~~l~~~~----~~~~~~~ 644 (1053)
+.+.|.++|.| ++++|+.+++.|++.| .+|.+.+|+. +.++++.+.+ .++..+.
T Consensus 4 dL~gK~alITGas~GIG~aia~~la~~G--------------------~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~ 63 (261)
T d1geea_ 4 DLEGKVVVITGSSTGLGKSMAIRFATEK--------------------AKVVVNYRSKEDEANSVLEEIKKVGGEAIAVK 63 (261)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTT--------------------CEEEEEESSCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 8899989993898689999999999879--------------------98999969837899999999996299589997
Q ss_pred ECCCCHHHHHHHHC-------CCCEEEECCCCC
Q ss_conf 12799778997501-------660999448852
Q 001559 645 LDVSDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 645 ~d~~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+|++|.+++.++++ ..|++||..+..
T Consensus 64 ~Dvt~~~~v~~~~~~~~~~~G~iDiLVnnAG~~ 96 (261)
T d1geea_ 64 GDVTVESDVINLVQSAIKEFGKLDVMINNAGLE 96 (261)
T ss_dssp CCTTSHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEECCCEEC
T ss_conf 547999999999999999838977761241005
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=97.64 E-value=6.8e-05 Score=45.95 Aligned_cols=78 Identities=14% Similarity=0.201 Sum_probs=60.0
Q ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC-HHHHHHHHHCC-----CCCEEEEE
Q ss_conf 899499993-743069999999937999843222233344367786279999889-88899998619-----99628991
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY-LKDAEEVIEGI-----PNAEAVQL 645 (1053)
Q Consensus 573 ~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~-~~~a~~l~~~~-----~~~~~~~~ 645 (1053)
++|.++|.| ++++|+.+++.|++.| .+|.+.+|+ .++++++.+.+ .++..+.+
T Consensus 3 ~gK~alITGas~GIG~aiA~~la~~G--------------------a~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~ 62 (260)
T d1x1ta1 3 KGKVAVVTGSTSGIGLGIATALAAQG--------------------ADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGA 62 (260)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT--------------------CEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 95999992888789999999999879--------------------9899996986788999999988741981899978
Q ss_pred CCCCHHHHHHHHC-------CCCEEEECCCCC
Q ss_conf 2799778997501-------660999448852
Q 001559 646 DVSDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 646 d~~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
|++|.+++.++++ ..|++||..+..
T Consensus 63 Dv~~~~~v~~~~~~~~~~~G~iDiLVnnAG~~ 94 (260)
T d1x1ta1 63 DLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQ 94 (260)
T ss_dssp CTTSHHHHHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 78999999999999999829976899521345
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=97.62 E-value=0.00038 Score=41.07 Aligned_cols=80 Identities=15% Similarity=0.192 Sum_probs=60.9
Q ss_pred CCCCCEEEEECC-C--HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHH---HHHHHCCCCCEEEE
Q ss_conf 878994999937-4--30699999999379998432222333443677862799998898889---99986199962899
Q 001559 571 TKGTSSVLIIGA-G--RVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDA---EEVIEGIPNAEAVQ 644 (1053)
Q Consensus 571 ~~~~~~vliiGa-G--~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a---~~l~~~~~~~~~~~ 644 (1053)
+.++|.++|.|+ | ++|+.+++.|++.| . +|.+.+|+.+.. ++......+...+.
T Consensus 5 ~L~gK~alITGas~~~GIG~aiA~~la~~G-a-------------------~V~i~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (256)
T d1ulua_ 5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAG-A-------------------EVALSYQAERLRPEAEKLAEALGGALLFR 64 (256)
T ss_dssp CCTTCEEEEESCCCSSSHHHHHHHHHHHTT-C-------------------EEEEEESSGGGHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCC-C-------------------EEEEEECCHHHHHHHHHHHHCCCCCCCCC
T ss_conf 899997999799998669999999999879-9-------------------99998174777999998640158643334
Q ss_pred ECCCCHHHHHHHHC-------CCCEEEECCCCC
Q ss_conf 12799778997501-------660999448852
Q 001559 645 LDVSDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 645 ~d~~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+|++|.+.+.++++ ..|++||+....
T Consensus 65 ~D~~~~~~v~~~~~~~~~~~g~iDilVnnag~~ 97 (256)
T d1ulua_ 65 ADVTQDEELDALFAGVKEAFGGLDYLVHAIAFA 97 (256)
T ss_dssp CCTTCHHHHHHHHHHHHHHHSSEEEEEECCCCC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 456999999999999998659966999655224
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=97.62 E-value=9.5e-05 Score=45.01 Aligned_cols=84 Identities=14% Similarity=0.157 Sum_probs=60.1
Q ss_pred CE-EEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCC----CCCEEEEECCC
Q ss_conf 94-99993-74306999999993799984322223334436778627999988988899998619----99628991279
Q 001559 575 SS-VLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----PNAEAVQLDVS 648 (1053)
Q Consensus 575 ~~-vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~~~~~~~~d~~ 648 (1053)
|+ |+|-| ++++|+.+++.|++.|-. ....+..|.+++|+.++++++.+.+ .++..+.+|++
T Consensus 1 K~VvlITGas~GIG~aia~~la~~G~~-------------~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt 67 (240)
T d2bd0a1 1 KHILLITGAGKGIGRAIALEFARAARH-------------HPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADIS 67 (240)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTT-------------CTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTT
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHCCC-------------CCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 988999258878999999999984760-------------0266757999939999999999999855994799980179
Q ss_pred CHHHHHHHHC-------CCCEEEECCCCCC
Q ss_conf 9778997501-------6609994488521
Q 001559 649 DHKSLCKCIS-------QVEIVISLLPASC 671 (1053)
Q Consensus 649 d~~~l~~~i~-------~~DvVI~~~p~~~ 671 (1053)
|.+++.++++ ..|++||..+...
T Consensus 68 ~~~~v~~~~~~~~~~~g~iDilvnnAg~~~ 97 (240)
T d2bd0a1 68 DMADVRRLTTHIVERYGHIDCLVNNAGVGR 97 (240)
T ss_dssp SHHHHHHHHHHHHHHTSCCSEEEECCCCCC
T ss_pred CHHHHHHHHHHHHHHCCCCCEEECCCCCCC
T ss_conf 999999999999998199666313423345
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.58 E-value=0.00025 Score=42.32 Aligned_cols=76 Identities=17% Similarity=0.108 Sum_probs=56.7
Q ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC--------------------HHHHHH
Q ss_conf 99499993-743069999999937999843222233344367786279999889--------------------888999
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY--------------------LKDAEE 632 (1053)
Q Consensus 574 ~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~--------------------~~~a~~ 632 (1053)
+|||||.| +|++|+.++..|.+.| + +|.+.|.- .++...
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g-~-------------------~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKN-Y-------------------EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISR 60 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT-C-------------------EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-C-------------------EEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 9989998998489999999999785-9-------------------8999946775422110121113433215778877
Q ss_pred HHHC-CCCCEEEEECCCCHHHHHHHHCCC--CEEEECCCC
Q ss_conf 9861-999628991279977899750166--099944885
Q 001559 633 VIEG-IPNAEAVQLDVSDHKSLCKCISQV--EIVISLLPA 669 (1053)
Q Consensus 633 l~~~-~~~~~~~~~d~~d~~~l~~~i~~~--DvVI~~~p~ 669 (1053)
.... ..+++.+.+|++|.+.+.+++.++ |+|++++..
T Consensus 61 ~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~d~ViHlAa~ 100 (393)
T d1i24a_ 61 WKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQ 100 (393)
T ss_dssp HHHHHCCCCEEEESCTTSHHHHHHHHHHHCCSEEEECCSC
T ss_pred HHHHCCCCCEEEECCCCCHHHHHHHHHHHCCHHEECCCCC
T ss_conf 7762279707998307899999999975110120012342
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=97.57 E-value=0.00059 Score=39.81 Aligned_cols=79 Identities=14% Similarity=0.182 Sum_probs=60.8
Q ss_pred CCCCEEEEECC-C--HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCH---HHHHHHHHCCCCCEEEEE
Q ss_conf 78994999937-4--30699999999379998432222333443677862799998898---889999861999628991
Q 001559 572 KGTSSVLIIGA-G--RVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL---KDAEEVIEGIPNAEAVQL 645 (1053)
Q Consensus 572 ~~~~~vliiGa-G--~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~---~~a~~l~~~~~~~~~~~~ 645 (1053)
.+.|+++|.|+ | ++|+++++.|++.| .+|.+++|+. ++++++........+...
T Consensus 3 L~gK~alITGaag~~GIG~AiA~~la~~G--------------------a~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~ 62 (274)
T d2pd4a1 3 LKGKKGLIVGVANNKSIAYGIAQSCFNQG--------------------ATLAFTYLNESLEKRVRPIAQELNSPYVYEL 62 (274)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTT--------------------CEEEEEESSTTTHHHHHHHHHHTTCCCEEEC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 79987999799998389999999999879--------------------9999996887999999999861795267630
Q ss_pred CCCCHHHHHHHH-------CCCCEEEECCCCC
Q ss_conf 279977899750-------1660999448852
Q 001559 646 DVSDHKSLCKCI-------SQVEIVISLLPAS 670 (1053)
Q Consensus 646 d~~d~~~l~~~i-------~~~DvVI~~~p~~ 670 (1053)
|+++.+...+++ ...|++|++.+..
T Consensus 63 d~~~~~~~~~~~~~~~~~~g~id~lV~nag~~ 94 (274)
T d2pd4a1 63 DVSKEEHFKSLYNSVKKDLGSLDFIVHSVAFA 94 (274)
T ss_dssp CTTCHHHHHHHHHHHHHHTSCEEEEEECCCCC
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 33311457889999999749987688412211
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=97.57 E-value=6.4e-05 Score=46.14 Aligned_cols=88 Identities=13% Similarity=0.146 Sum_probs=60.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHHHH
Q ss_conf 94999937430699999999379998432222333443677862799998898889999861999628991279977899
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 575 ~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
|+|.+||+|.+|.+++..|.+.+. .++.+++|+.++++++.+.+. +.+. + +.
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~~-------------------~~i~v~~r~~~~~~~l~~~~~-~~~~--~--~~---- 52 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQGG-------------------YRIYIANRGAEKRERLEKELG-VETS--A--TL---- 52 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCS-------------------CEEEEECSSHHHHHHHHHHTC-CEEE--S--SC----
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-------------------CCEEEEECCHHHHHHHHHHCC-CCCC--C--CC----
T ss_conf 989999674999999999997899-------------------758999488167777654211-2234--3--11----
Q ss_pred HHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEE
Q ss_conf 750166099944885211799999887079099951
Q 001559 655 KCISQVEIVISLLPASCHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 655 ~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~s 690 (1053)
+.++++|+|+-++++..-..+.+.....++.++++.
T Consensus 53 ~~v~~~Div~lavkP~~~~~v~~~l~~~~~~viS~~ 88 (152)
T d1yqga2 53 PELHSDDVLILAVKPQDMEAACKNIRTNGALVLSVA 88 (152)
T ss_dssp CCCCTTSEEEECSCHHHHHHHHTTCCCTTCEEEECC
T ss_pred CCCCCCCEEEEECCHHHHHHHHHHHHHCCCEEEECC
T ss_conf 111355508994587887776798851362786404
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=97.54 E-value=0.00065 Score=39.55 Aligned_cols=74 Identities=16% Similarity=0.200 Sum_probs=58.4
Q ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCC-
Q ss_conf 7899499993-74306999999993799984322223334436778627999988988899998619996289912799-
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSD- 649 (1053)
Q Consensus 572 ~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d- 649 (1053)
.+.|+++|.| ++++|+.+++.|++.| .+|.+++|+.+.+++. ..+...+|+++
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~G--------------------a~V~~~~r~~~~l~~~-----~~~~~~~Dv~~~ 56 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEG--------------------AEVTICARNEELLKRS-----GHRYVVCDLRKD 56 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT--------------------CEEEEEESCHHHHHHT-----CSEEEECCTTTC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHC-----CCCEEECCHHHH
T ss_conf 898989996887499999999999879--------------------9999998999999860-----786897636899
Q ss_pred HHHHHHHHCCCCEEEECCCCC
Q ss_conf 778997501660999448852
Q 001559 650 HKSLCKCISQVEIVISLLPAS 670 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~~ 670 (1053)
.+.+.+.+.+.|++||..+..
T Consensus 57 ~~~~~~~~g~iD~lVnnAG~~ 77 (234)
T d1o5ia_ 57 LDLLFEKVKEVDILVLNAGGP 77 (234)
T ss_dssp HHHHHHHSCCCSEEEECCCCC
T ss_pred HHHHHHHHCCCCEEEECCCCC
T ss_conf 999999848986999656556
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.51 E-value=0.00058 Score=39.90 Aligned_cols=100 Identities=8% Similarity=-0.026 Sum_probs=66.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCC-----
Q ss_conf 994999937430699999999379998432222333443677862799998898889999861999628991279-----
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVS----- 648 (1053)
Q Consensus 574 ~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~----- 648 (1053)
+.||.|.|.|++||.+++.+..++++ .-|.|.+..+......+.... ......+..
T Consensus 2 ~irIaINGfGRIGR~v~Ral~~~~di------------------eiVaINd~~~~~~~~~l~~~~-~~~~~~~~~~~~~~ 62 (172)
T d2czca2 2 KVKVGVNGYGTIGKRVAYAVTKQDDM------------------ELIGITKTKPDFEAYRAKELG-IPVYAASEEFIPRF 62 (172)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTE------------------EEEEEEESSCSHHHHHHHHTT-CCEEESSGGGHHHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCC------------------EEEEEECCCCHHHHHHHHHCC-CEEECCCCCCEEEE
T ss_conf 57999989878899999999759996------------------599996699758998754158-50223543100110
Q ss_pred ------CHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEECC
Q ss_conf ------97789975016609994488521179999988707909995136
Q 001559 649 ------DHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYI 692 (1053)
Q Consensus 649 ------d~~~l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~sy~ 692 (1053)
....+..+..++|+||.|||.+....-++..+++|+..|-.+.-
T Consensus 63 ~~~~~~~~~~~~~~~~~vDvViEcTG~f~~~~~~~~hl~~G~k~Vi~s~~ 112 (172)
T d2czca2 63 EKEGFEVAGTLNDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAIFQGGE 112 (172)
T ss_dssp HHHTCCCSCBHHHHHTTCSEEEECCSTTHHHHHHHHHHHHTCEEEECTTS
T ss_pred CCCCCCCCCHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEECCC
T ss_conf 24675446106556306989998888777899999999849989998899
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.50 E-value=1.1e-05 Score=51.10 Aligned_cols=115 Identities=16% Similarity=0.132 Sum_probs=78.8
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCC--CEEEEECCCC
Q ss_conf 78994999937430699999999379998432222333443677862799998898889999861999--6289912799
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPN--AEAVQLDVSD 649 (1053)
Q Consensus 572 ~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~--~~~~~~d~~d 649 (1053)
....++.|||+|..++..++.|....+. .+|.|.+|+.++++++++.+.. +.+. .+ .
T Consensus 123 ~~~~~l~iiGaG~QA~~~~~al~~~~~i------------------~~i~v~~r~~e~~~~~~~~~~~~~~~~~-~~--~ 181 (320)
T d1omoa_ 123 KNSSVFGFIGCGTQAYFQLEALRRVFDI------------------GEVKAYDVREKAAKKFVSYCEDRGISAS-VQ--P 181 (320)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHHSCC------------------CEEEEECSSHHHHHHHHHHHHHTTCCEE-EC--C
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHH------------------HHCCCCCCCHHHHHHHHHHHHHCCCCCC-CC--H
T ss_conf 7861899966861078999999877666------------------5200036889999999999886278654-32--0
Q ss_pred HHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 778997501660999448852117999998870790999513675699999999975986980
Q 001559 650 HKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILG 712 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~ii~ 712 (1053)
.+.+.++|+|+.||+.. .+.+....++.|.|+.-+....+.+++++...-++...++.
T Consensus 182 ----~~a~~~aDiV~taT~s~-~P~~~~~~l~~G~hv~~iGs~~p~~~Eld~~~~~~a~~~vd 239 (320)
T d1omoa_ 182 ----AEEASRCDVLVTTTPSR-KPVVKAEWVEEGTHINAIGADGPGKQELDVEILKKAKIVVD 239 (320)
T ss_dssp ----HHHHTSSSEEEECCCCS-SCCBCGGGCCTTCEEEECSCCSTTCCCBCHHHHHTEEEEES
T ss_pred ----HHHHCCCCEEEEECCCC-CCCCCHHHCCCCCEEEECCCCCCCCCCCCHHHHHCCCEEEC
T ss_conf ----22012363799842575-40144544689976854377645531258788625736735
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.49 E-value=0.0003 Score=41.70 Aligned_cols=78 Identities=14% Similarity=0.205 Sum_probs=61.6
Q ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCH
Q ss_conf 7899499993-743069999999937999843222233344367786279999889888999986199962899127997
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 572 ~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
.+.|.++|.| ++++|+.+++.|++.| .+|.+++|+.++++++.+.. ++....+|+.+.
T Consensus 4 l~gK~alITGas~GIG~aia~~la~~G--------------------~~Vi~~~r~~~~l~~~~~~~-~~~~~~~d~~~~ 62 (245)
T d2ag5a1 4 LDGKVIILTAAAQGIGQAAALAFAREG--------------------AKVIATDINESKLQELEKYP-GIQTRVLDVTKK 62 (245)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTT--------------------CEEEEEESCHHHHGGGGGST-TEEEEECCTTCH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHCC-CCCEEEEECCCC
T ss_conf 799889994888789999999999869--------------------99999969989999998624-972443201222
Q ss_pred HHHH---HHHCCCCEEEECCCCC
Q ss_conf 7899---7501660999448852
Q 001559 651 KSLC---KCISQVEIVISLLPAS 670 (1053)
Q Consensus 651 ~~l~---~~i~~~DvVI~~~p~~ 670 (1053)
+... +.+...|++||+.+..
T Consensus 63 ~~~~~~~~~~~~id~lVn~ag~~ 85 (245)
T d2ag5a1 63 KQIDQFANEVERLDVLFNVAGFV 85 (245)
T ss_dssp HHHHHHHHHCSCCSEEEECCCCC
T ss_pred CCCCCCCCCCCCCEEEEECCCCC
T ss_conf 22233100002320388403665
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=97.49 E-value=8.8e-05 Score=45.24 Aligned_cols=83 Identities=14% Similarity=0.148 Sum_probs=59.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHC------CCCCEEEEE
Q ss_conf 78994999937430699999999379998432222333443677862799998898889999861------999628991
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEG------IPNAEAVQL 645 (1053)
Q Consensus 572 ~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~------~~~~~~~~~ 645 (1053)
..++||.|||+|.+|.+++..|++.+ .+|.+++|+.+.++++.+. +|++..- -
T Consensus 5 ~~m~KI~ViGaG~wGtAlA~~La~~g--------------------~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~-~ 63 (189)
T d1n1ea2 5 LYLNKAVVFGSGAFGTALAMVLSKKC--------------------REVCVWHMNEEEVRLVNEKRENVLFLKGVQLA-S 63 (189)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHTTE--------------------EEEEEECSCHHHHHHHHHHTBCTTTSTTCBCC-T
T ss_pred CEECEEEEECCCHHHHHHHHHHHHCC--------------------CEEEEEEECHHHHHHHHHCCCCCCCCCCCCCC-C
T ss_conf 10156999998999999999999759--------------------96899992579999875024543345521013-3
Q ss_pred CCCCHHHHHHHHCCCCEEEECCCCCCCHHH
Q ss_conf 279977899750166099944885211799
Q 001559 646 DVSDHKSLCKCISQVEIVISLLPASCHVMV 675 (1053)
Q Consensus 646 d~~d~~~l~~~i~~~DvVI~~~p~~~~~~v 675 (1053)
++.-..++.+.++++|+||-++|......+
T Consensus 64 ~i~~t~~l~~a~~~ad~iiiavPs~~~~~~ 93 (189)
T d1n1ea2 64 NITFTSDVEKAYNGAEIILFVIPTQFLRGF 93 (189)
T ss_dssp TEEEESCHHHHHTTCSCEEECSCHHHHHHH
T ss_pred CCCCCHHHHHCCCCCCEEEECCCHHHHHHH
T ss_conf 431001034314788799995807899999
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.46 E-value=0.00021 Score=42.81 Aligned_cols=81 Identities=23% Similarity=0.246 Sum_probs=60.4
Q ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEE-ECCHHHHHHHHHCC----CCCEEEE
Q ss_conf 87899499993-743069999999937999843222233344367786279999-88988899998619----9962899
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVA-SLYLKDAEEVIEGI----PNAEAVQ 644 (1053)
Q Consensus 571 ~~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~-~r~~~~a~~l~~~~----~~~~~~~ 644 (1053)
...+|.++|.| ++++|++++..|++.| . +|.+. +++.+.++++.+.+ .++..+.
T Consensus 3 ~L~GK~alITGas~GIG~aia~~la~~G-~-------------------~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~ 62 (259)
T d1ja9a_ 3 PLAGKVALTTGAGRGIGRGIAIELGRRG-A-------------------SVVVNYGSSSKAAEEVVAELKKLGAQGVAIQ 62 (259)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTT-C-------------------EEEEEESSCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC-C-------------------EEEEECCCCHHHHHHHHHHHHHCCCCCEEEC
T ss_conf 8899889996988889999999999869-9-------------------8999718986899999999997199740752
Q ss_pred ECCCCHHHHHHHHC-------CCCEEEECCCCCC
Q ss_conf 12799778997501-------6609994488521
Q 001559 645 LDVSDHKSLCKCIS-------QVEIVISLLPASC 671 (1053)
Q Consensus 645 ~d~~d~~~l~~~i~-------~~DvVI~~~p~~~ 671 (1053)
+|++|.+.+.+++. ..|++||..+...
T Consensus 63 ~D~~~~~~v~~~~~~~~~~~g~idilinnag~~~ 96 (259)
T d1ja9a_ 63 ADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEV 96 (259)
T ss_dssp CCTTSHHHHHHHHHHHHHHHSCEEEEECCCCCCC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCC
T ss_conf 8789999999999999998399758994366653
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.45 E-value=0.0026 Score=35.57 Aligned_cols=124 Identities=16% Similarity=0.165 Sum_probs=73.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCHH
Q ss_conf 78994999937430699999999379998432222333443677862799998898889999861999628991279977
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 572 ~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
....+|+|+|+|.+|..++..+...| . .+|.+++++.++.+.. ..+.--.++..+-.+..
T Consensus 25 ~~gd~VlI~G~G~iG~~~~~~a~~~G-~------------------~~Vi~~d~~~~rl~~a-~~~Ga~~~~~~~~~~~~ 84 (171)
T d1pl8a2 25 TLGHKVLVCGAGPIGMVTLLVAKAMG-A------------------AQVVVTDLSATRLSKA-KEIGADLVLQISKESPQ 84 (171)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT-C------------------SEEEEEESCHHHHHHH-HHTTCSEEEECSSCCHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCC-C------------------CEEEECCCCHHHHHHH-HHHCCCCCCCCCCCCCC
T ss_conf 99998999888841899999998739-8------------------2587406998999999-99597500044332200
Q ss_pred HHHHHH-----CCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEECCCH-HHHHHHHHHHHCCCEEEECCCC
Q ss_conf 899750-----1660999448852117999998870790999513675-6999999999759869806889
Q 001559 652 SLCKCI-----SQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDD-SMSKLDEKAKGAGITILGEMGL 716 (1053)
Q Consensus 652 ~l~~~i-----~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~sy~~~-~~~~L~~~Ak~~Gv~ii~g~G~ 716 (1053)
...+.+ .++|+||.+++.......+..+++.|-.++-+....+ ....+. ..-.+++++....+.
T Consensus 85 ~~~~~~~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~gG~iv~~G~~~~~~~~~~~-~~~~k~l~i~Gs~~~ 154 (171)
T d1pl8a2 85 EIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLL-HAAIREVDIKGVFRY 154 (171)
T ss_dssp HHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCCSCCCCCHH-HHHHTTCEEEECCSC
T ss_pred CCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCHH-HHHHCCCEEEEEECC
T ss_conf 0001100157987439984068725489999974489879999617998762899-998789389998487
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=97.45 E-value=0.0003 Score=41.70 Aligned_cols=79 Identities=19% Similarity=0.125 Sum_probs=61.4
Q ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHC-----CCC-CEEE
Q ss_conf 87899499993-7430699999999379998432222333443677862799998898889999861-----999-6289
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEG-----IPN-AEAV 643 (1053)
Q Consensus 571 ~~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~-----~~~-~~~~ 643 (1053)
..++++|||.| +|++|+.++..|.+.| . .|..+.|+.++...+... ... ...+
T Consensus 8 ~~~gk~VlVTG~sGfIGs~l~~~Ll~~G-~-------------------~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~ 67 (342)
T d1y1pa1 8 LPEGSLVLVTGANGFVASHVVEQLLEHG-Y-------------------KVRGTARSASKLANLQKRWDAKYPGRFETAV 67 (342)
T ss_dssp SCTTCEEEEETTTSHHHHHHHHHHHHTT-C-------------------EEEEEESSHHHHHHHHHHHHHHSTTTEEEEE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC-C-------------------EEEEEECCCHHHHHHHHHHHCCCCCCCCEEE
T ss_conf 9995999997998899999999999785-9-------------------8999968821689998743112556451789
Q ss_pred EECCCCHHHHHHHHCCCCEEEECCCC
Q ss_conf 91279977899750166099944885
Q 001559 644 QLDVSDHKSLCKCISQVEIVISLLPA 669 (1053)
Q Consensus 644 ~~d~~d~~~l~~~i~~~DvVI~~~p~ 669 (1053)
..|+.|.+.+.+.+.++|.|+++...
T Consensus 68 ~~Dl~~~~~~~~~~~~~~~v~~~a~~ 93 (342)
T d1y1pa1 68 VEDMLKQGAYDEVIKGAAGVAHIASV 93 (342)
T ss_dssp CSCTTSTTTTTTTTTTCSEEEECCCC
T ss_pred ECCCCCHHHHHHHCCCCHHHHHHCCC
T ss_conf 65023405542211321001100123
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.43 E-value=0.00052 Score=40.18 Aligned_cols=80 Identities=23% Similarity=0.259 Sum_probs=60.8
Q ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC-HHHHHHHHHC----CCCCEEEE
Q ss_conf 87899499993-743069999999937999843222233344367786279999889-8889999861----99962899
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY-LKDAEEVIEG----IPNAEAVQ 644 (1053)
Q Consensus 571 ~~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~-~~~a~~l~~~----~~~~~~~~ 644 (1053)
..++|.++|.| ++++|+++++.|++.| .+|.+.+++ .+.++++.+. ..++..+.
T Consensus 15 sL~gK~~lITGas~GIG~aia~~la~~G--------------------a~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~ 74 (272)
T d1g0oa_ 15 SLEGKVALVTGAGRGIGREMAMELGRRG--------------------CKVIVNYANSTESAEEVVAAIKKNGSDAACVK 74 (272)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTT--------------------CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 8899989994888789999999999869--------------------98999818956889999999996099602675
Q ss_pred ECCCCHHHHHHHHC-------CCCEEEECCCCC
Q ss_conf 12799778997501-------660999448852
Q 001559 645 LDVSDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 645 ~d~~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
+|++|.+.+.++++ ..|++|+..+..
T Consensus 75 ~D~~~~~~v~~~~~~~~~~~g~idilV~nag~~ 107 (272)
T d1g0oa_ 75 ANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVV 107 (272)
T ss_dssp CCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 777999999999999999829977100022221
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.43 E-value=0.002 Score=36.35 Aligned_cols=128 Identities=14% Similarity=0.186 Sum_probs=78.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCC-EEE--------EE
Q ss_conf 949999374306999999993799984322223334436778627999988988899998619996-289--------91
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNA-EAV--------QL 645 (1053)
Q Consensus 575 ~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~-~~~--------~~ 645 (1053)
|+|.|+|+|++|.+.|..|++.| + +|...|.+.++.+.+......+ +.. ..
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g-~-------------------~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~ 60 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARG-H-------------------EVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQ 60 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTT-C-------------------EEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-C-------------------CEEEEECCHHHHHHHCCCCCCCCCHHHHHHHHHHHC
T ss_conf 98999898884999999999589-9-------------------389996988999985165786310025555444201
Q ss_pred --CCCCHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHH--HCCCEEEECCCCCHHHH
Q ss_conf --27997789975016609994488521179999988707909995136756999999999--75986980688982478
Q 001559 646 --DVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAK--GAGITILGEMGLDPGID 721 (1053)
Q Consensus 646 --d~~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~sy~~~~~~~L~~~Ak--~~Gv~ii~g~G~dPGi~ 721 (1053)
...-..++.+.+.++|+++-|+|..... .+. .|..+.......+.+.++ ..+..++...-.-||.+
T Consensus 61 ~~~~~~~~~~~~~i~~~d~i~i~VpTP~~~--------~~~--~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt 130 (202)
T d1mv8a2 61 TGRLSGTTDFKKAVLDSDVSFICVGTPSKK--------NGD--LDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTV 130 (202)
T ss_dssp TTCEEEESCHHHHHHTCSEEEECCCCCBCT--------TSS--BCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHH
T ss_pred CCCCCCCCCHHHHHHHCCEEEEECCCCCCC--------CCC--CCCHHHHHHHHHHHHEEECCCCCCCEEECCCCCCCCH
T ss_conf 222334788899874288899923764444--------423--4520333333333200001457750340156678500
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999986
Q 001559 722 HMMAMKMINHA 732 (1053)
Q Consensus 722 ~mla~~~~~~~ 732 (1053)
..+...++...
T Consensus 131 ~~~~~~~l~~~ 141 (202)
T d1mv8a2 131 NNVVIPLIEDC 141 (202)
T ss_dssp HHTHHHHHHHH
T ss_pred HHHHHHHHHCC
T ss_conf 56653112001
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.42 E-value=0.0003 Score=41.74 Aligned_cols=84 Identities=19% Similarity=0.199 Sum_probs=58.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC--HHHHHHHHHCCC--C----CEEEEEC
Q ss_conf 9499993743069999999937999843222233344367786279999889--888999986199--9----6289912
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY--LKDAEEVIEGIP--N----AEAVQLD 646 (1053)
Q Consensus 575 ~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~--~~~a~~l~~~~~--~----~~~~~~d 646 (1053)
|+|.|||+|.+|.++|..|++.+ . +|.++.|. .+.++.+..... . .....+.
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g-~-------------------~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~ 60 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNG-N-------------------EVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIF 60 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHC-C-------------------EEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-C-------------------EEEEEEECCCHHHHHHHHHHHHHHHHCCHHCCCCCC
T ss_conf 98999997999999999999889-9-------------------899997356577899875544455412000332000
Q ss_pred CCCHHHHHHHHCCCCEEEECCCCCCCHHHHHHHH
Q ss_conf 7997789975016609994488521179999988
Q 001559 647 VSDHKSLCKCISQVEIVISLLPASCHVMVANACI 680 (1053)
Q Consensus 647 ~~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~a~i 680 (1053)
-..++.+.++++|+||.++|......+.+...
T Consensus 61 --~~~~~~~~~~~ad~Ii~avps~~~~~~~~~l~ 92 (180)
T d1txga2 61 --WPEQLEKCLENAEVVLLGVSTDGVLPVMSRIL 92 (180)
T ss_dssp --CGGGHHHHHTTCSEEEECSCGGGHHHHHHHHT
T ss_pred --CCCCHHHHHHCCCHHHCCCCHHHHHHHHHHHC
T ss_conf --00128998734330000230165699998641
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=97.39 E-value=0.0022 Score=36.07 Aligned_cols=96 Identities=11% Similarity=0.045 Sum_probs=62.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHHH
Q ss_conf 99499993743069999999937999843222233344367786279999889888999986199962899127997789
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 574 ~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
+++|+|||+|.+|..++..|.+.+ . +.+|...|++.+..+...+... .....- +..
T Consensus 1 Mk~I~IIG~G~mG~sla~~L~~~g-~-----------------~~~I~~~D~~~~~~~~a~~~~~-~~~~~~---~~~-- 56 (171)
T d2g5ca2 1 MQNVLIVGVGFMGGSFAKSLRRSG-F-----------------KGKIYGYDINPESISKAVDLGI-IDEGTT---SIA-- 56 (171)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHTT-C-----------------CSEEEEECSCHHHHHHHHHTTS-CSEEES---CGG--
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-C-----------------CEEEEEEECCHHHHHHHHHHHC-CHHHHH---HHH--
T ss_conf 978999941989999999999639-9-----------------7089999798688999998411-222210---023--
Q ss_pred HHHHCCCCEEEECCCCCCCHHHHHH---HHHHCCEEEEEECCC
Q ss_conf 9750166099944885211799999---887079099951367
Q 001559 654 CKCISQVEIVISLLPASCHVMVANA---CIEFKKHLVTASYID 693 (1053)
Q Consensus 654 ~~~i~~~DvVI~~~p~~~~~~v~~a---~i~~g~~~vD~sy~~ 693 (1053)
......+|+||-|+|+.....+.+. .+..++.++|++...
T Consensus 57 ~~~~~~~dlIila~p~~~~~~vl~~l~~~~~~~~ii~d~~s~k 99 (171)
T d2g5ca2 57 KVEDFSPDFVMLSSPVRTFREIAKKLSYILSEDATVTDQGSVK 99 (171)
T ss_dssp GGGGTCCSEEEECSCHHHHHHHHHHHHHHSCTTCEEEECCSCC
T ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 3210123323336880233213432200356543200003332
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=97.39 E-value=0.0013 Score=37.63 Aligned_cols=80 Identities=16% Similarity=0.191 Sum_probs=56.6
Q ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCH-H-HHHHHHHC-CCCCEEEEECCC
Q ss_conf 899499993-7430699999999379998432222333443677862799998898-8-89999861-999628991279
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL-K-DAEEVIEG-IPNAEAVQLDVS 648 (1053)
Q Consensus 573 ~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~-~-~a~~l~~~-~~~~~~~~~d~~ 648 (1053)
++|+|||.| +|.+|+.+++.|.+.| . +..+++.|+.. . ....+... .++++.+.+|++
T Consensus 1 ~~mkILVTGgtGfIGs~lv~~L~~~g-~-----------------~v~v~~~d~~~~~~~~~~~~~~~~~~i~~~~~Di~ 62 (346)
T d1oc2a_ 1 QFKNIIVTGGAGFIGSNFVHYVYNNH-P-----------------DVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIA 62 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHC-T-----------------TCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-C-----------------CEEEEEEECCCCCCCHHHHHHHHCCCEEEEECCCC
T ss_conf 93999991888689999999999779-9-----------------74999984887423487888862588089976278
Q ss_pred CHHHHHHHHCCCCEEEECCCCC
Q ss_conf 9778997501660999448852
Q 001559 649 DHKSLCKCISQVEIVISLLPAS 670 (1053)
Q Consensus 649 d~~~l~~~i~~~DvVI~~~p~~ 670 (1053)
|.+.+.+++..+|.|+++....
T Consensus 63 d~~~~~~~~~~~~~v~~~a~~~ 84 (346)
T d1oc2a_ 63 DAELVDKLAAKADAIVHYAAES 84 (346)
T ss_dssp CHHHHHHHHTTCSEEEECCSCC
T ss_pred CHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9899998775200354443204
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.36 E-value=0.003 Score=35.21 Aligned_cols=98 Identities=14% Similarity=0.144 Sum_probs=58.8
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCC--C
Q ss_conf 78994999937430699999999379998432222333443677862799998898889999861999628991279--9
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVS--D 649 (1053)
Q Consensus 572 ~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~--d 649 (1053)
....+|+|+|+|.+|..++..+...| .+|.+++++.+|.+...+ +..-..+..+.. +
T Consensus 25 ~~g~~vlV~G~G~vG~~~~~~ak~~G--------------------a~vi~v~~~~~r~~~a~~-~ga~~~~~~~~~~~~ 83 (170)
T d1e3ja2 25 QLGTTVLVIGAGPIGLVSVLAAKAYG--------------------AFVVCTARSPRRLEVAKN-CGADVTLVVDPAKEE 83 (170)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT--------------------CEEEEEESCHHHHHHHHH-TTCSEEEECCTTTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHC--------------------CCCCCCCHHHHHHHHHHH-CCCCEEEECCCCCCC
T ss_conf 99998999820664423376676620--------------------231013207778999997-299679955664433
Q ss_pred HHHHHHHH-----CCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEE
Q ss_conf 77899750-----166099944885211799999887079099951
Q 001559 650 HKSLCKCI-----SQVEIVISLLPASCHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 650 ~~~l~~~i-----~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~s 690 (1053)
.....+.+ .++|+||++++.......+-.+++.+-.++-+.
T Consensus 84 ~~~~~~~~~~~~g~g~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G 129 (170)
T d1e3ja2 84 ESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVG 129 (170)
T ss_dssp HHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECS
T ss_pred CCHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 1011101110235577465642787177999999983078569995
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.36 E-value=0.00041 Score=40.88 Aligned_cols=79 Identities=13% Similarity=0.188 Sum_probs=58.6
Q ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHH---HCCCCCEEEEECCCC
Q ss_conf 99499993-74306999999993799984322223334436778627999988988899998---619996289912799
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVI---EGIPNAEAVQLDVSD 649 (1053)
Q Consensus 574 ~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~---~~~~~~~~~~~d~~d 649 (1053)
||+|+|.| +.++|+.+++.|++... .+..|.+++|+.++++++. ...+++..+.+|++|
T Consensus 2 MKtilITGas~GIG~a~a~~l~~~a~-----------------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~ 64 (248)
T d1snya_ 2 MNSILITGCNRGLGLGLVKALLNLPQ-----------------PPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRN 64 (248)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSS-----------------CCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHH-----------------CCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEEEECC
T ss_conf 69899908987999999999998885-----------------7999999988989999999998549908999988413
Q ss_pred HHHHHHHHC---------CCCEEEECCCC
Q ss_conf 778997501---------66099944885
Q 001559 650 HKSLCKCIS---------QVEIVISLLPA 669 (1053)
Q Consensus 650 ~~~l~~~i~---------~~DvVI~~~p~ 669 (1053)
.+++.++++ ..|++||..+.
T Consensus 65 ~~~v~~~~~~i~~~~~~~~iDiLvnNAg~ 93 (248)
T d1snya_ 65 FDAYDKLVADIEGVTKDQGLNVLFNNAGI 93 (248)
T ss_dssp GGGHHHHHHHHHHHHGGGCCSEEEECCCC
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 89998877666777504875567760232
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.36 E-value=0.0013 Score=37.49 Aligned_cols=99 Identities=12% Similarity=0.036 Sum_probs=64.6
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC-------------------HHHH--
Q ss_conf 7899499993743069999999937999843222233344367786279999889-------------------8889--
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY-------------------LKDA-- 630 (1053)
Q Consensus 572 ~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~-------------------~~~a-- 630 (1053)
.+..+|+|+|+|++|..++..|+..| + ..++|+|.+ ..++
T Consensus 23 L~~s~VlvvG~gglG~Ei~knLvl~G-V------------------g~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~ 83 (529)
T d1yova1 23 LESAHVCLINATATGTEILKNLVLPG-I------------------GSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEA 83 (529)
T ss_dssp HHHCEEEECCCSHHHHHHHHHHHTTT-C------------------SEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHH
T ss_pred HHCCCEEEECCCHHHHHHHHHHHHHC-C------------------CEEEEECCCCCCHHHCCCHHCCCHHHCCCHHHHH
T ss_conf 95798899888889999999999826-9------------------8899985996896665820157945578799999
Q ss_pred --HHHHHCCCCCEEEEECCCCHHHH----HHHHCCCCEEEECCCCC-CCHHHHHHHHHHCCEEEEEE
Q ss_conf --99986199962899127997789----97501660999448852-11799999887079099951
Q 001559 631 --EEVIEGIPNAEAVQLDVSDHKSL----CKCISQVEIVISLLPAS-CHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 631 --~~l~~~~~~~~~~~~d~~d~~~l----~~~i~~~DvVI~~~p~~-~~~~v~~a~i~~g~~~vD~s 690 (1053)
+.+.+..|.+.+..++. +...+ .+.+.++|+||.+.... ....+.+.|.+.+++++...
T Consensus 84 ~~~~L~~lNp~v~i~~~~~-~~~~~~~~~~~~~~~~dvVv~~~~~~~~~~~l~~~c~~~~ip~i~~~ 149 (529)
T d1yova1 84 AMEFLQELNSDVSGSFVEE-SPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICR 149 (529)
T ss_dssp HHHHHHTTCTTSBCCEESS-CHHHHHHSCGGGGGGCSEEEEESCCHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHCCCCCEEEECC-CCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9999998689995799737-70134443798856899999899999999999999998299999995
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.29 E-value=0.00046 Score=40.52 Aligned_cols=99 Identities=11% Similarity=0.057 Sum_probs=62.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEE--------
Q ss_conf 994999937430699999999379998432222333443677862799998898889999861999628991--------
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQL-------- 645 (1053)
Q Consensus 574 ~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~-------- 645 (1053)
|-||.|.|.|++||.+++.+.+++++ .-|.|.++.+............ .....
T Consensus 1 MIKVaINGfGRIGR~v~Ral~~~~di------------------evVaInd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 61 (178)
T d1b7go1 1 MVNVAVNGYGTIGKRVADAIIKQPDM------------------KLVGVAKTSPNYEAFIAHRRGI-RIYVPQQSIKKFE 61 (178)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTE------------------EEEEEECSSCSHHHHHHHHTTC-CEECCGGGHHHHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCC------------------EEEEEECCCCCHHHHHHCCCCC-CEECCCCCCEECC
T ss_conf 94999978987999999999769997------------------7999978997277877421576-1442576521426
Q ss_pred --CCCCHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEEC
Q ss_conf --2799778997501660999448852117999998870790999513
Q 001559 646 --DVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASY 691 (1053)
Q Consensus 646 --d~~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~sy 691 (1053)
...-...+.....++|+||.|||.+....-++.+++.|+.++-.+.
T Consensus 62 ~~~i~v~g~~~~~~~~vDiViecTG~f~~~e~a~~hl~~G~KvIi~~~ 109 (178)
T d1b7go1 62 ESGIPVAGTVEDLIKTSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQGG 109 (178)
T ss_dssp TTTCCCCCCHHHHHHHCSEEEECCSTTHHHHHHHHHHHTTCEEEECTT
T ss_pred CCCEECCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHCCCEEEEECC
T ss_conf 662465775155650699999898875799999999984987999899
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.27 E-value=0.0033 Score=34.91 Aligned_cols=78 Identities=15% Similarity=0.136 Sum_probs=55.0
Q ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC------------CHHHHHHHHHCC---
Q ss_conf 99499993-74306999999993799984322223334436778627999988------------988899998619---
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASL------------YLKDAEEVIEGI--- 637 (1053)
Q Consensus 574 ~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r------------~~~~a~~l~~~~--- 637 (1053)
.|||||.| +|++|+.+++.|++.+. .+|.+.|+ ..++........
T Consensus 2 ~MKVLITG~tGfIGs~lv~~LL~~~~-------------------~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (383)
T d1gy8a_ 2 HMRVLVCGGAGYIGSHFVRALLRDTN-------------------HSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGP 62 (383)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCC-------------------CEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSS
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHCC-------------------CEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 69799957876899999999998289-------------------98999826876555300133566677776541133
Q ss_pred ------CCCEEEEECCCCHHHHHHHHC---CCCEEEECCCCC
Q ss_conf ------996289912799778997501---660999448852
Q 001559 638 ------PNAEAVQLDVSDHKSLCKCIS---QVEIVISLLPAS 670 (1053)
Q Consensus 638 ------~~~~~~~~d~~d~~~l~~~i~---~~DvVI~~~p~~ 670 (1053)
.++..+..|++|.+.+.++++ .+|+|+++....
T Consensus 63 ~~~~~~~~~~~~~~Di~d~~~l~~~~~~~~~~d~ViH~Aa~~ 104 (383)
T d1gy8a_ 63 KPPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFL 104 (383)
T ss_dssp CCTTTTCCCEEEESCTTCHHHHHHHHHHSCCCCEEEECCCCC
T ss_pred CCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEHHHCCCCCC
T ss_conf 332235541799784568788666662240120432324432
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.27 E-value=0.00063 Score=39.66 Aligned_cols=74 Identities=24% Similarity=0.227 Sum_probs=58.3
Q ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 87899499993-74306999999993799984322223334436778627999988988899998619996289912799
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSD 649 (1053)
Q Consensus 571 ~~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d 649 (1053)
..+.|.++|.| ++++|+.+++.|++.| .+|.+++|+.++ ..++..+.+|++|
T Consensus 4 sl~gK~~lITGas~GIG~aia~~la~~G--------------------a~V~~~~r~~~~-------~~~~~~~~~Dv~~ 56 (237)
T d1uzma1 4 PFVSRSVLVTGGNRGIGLAIAQRLAADG--------------------HKVAVTHRGSGA-------PKGLFGVEVDVTD 56 (237)
T ss_dssp CCCCCEEEETTTTSHHHHHHHHHHHHTT--------------------CEEEEEESSSCC-------CTTSEEEECCTTC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCCCH-------HCCCEEEEEECCC
T ss_conf 9999879992788889999999999879--------------------989999799330-------0675389975389
Q ss_pred HHHHHHHHC-------CCCEEEECCCCCC
Q ss_conf 778997501-------6609994488521
Q 001559 650 HKSLCKCIS-------QVEIVISLLPASC 671 (1053)
Q Consensus 650 ~~~l~~~i~-------~~DvVI~~~p~~~ 671 (1053)
.+++.++++ ..|++||+.+...
T Consensus 57 ~~~v~~~~~~~~~~~g~iDiLVnnAG~~~ 85 (237)
T d1uzma1 57 SDAVDRAFTAVEEHQGPVEVLVSNAGLSA 85 (237)
T ss_dssp HHHHHHHHHHHHHHHSSCSEEEEECSCCC
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEECCCC
T ss_conf 99999999999985698328986500101
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=97.26 E-value=2.4e-05 Score=48.90 Aligned_cols=86 Identities=21% Similarity=0.097 Sum_probs=59.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHHHHHH
Q ss_conf 99993743069999999937999843222233344367786279999889888999986199962899127997789975
Q 001559 577 VLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLCKC 656 (1053)
Q Consensus 577 vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~~~ 656 (1053)
|.+||+|.+|+++++.|.+.+ . .+.|.+|+.++++++.+..... . .++.+.
T Consensus 2 IgfIG~G~mg~~l~~~L~~~~-~-------------------~~~v~~R~~~~~~~l~~~~~~~------~---~~~~~~ 52 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDRY-E-------------------IGYILSRSIDRARNLAEVYGGK------A---ATLEKH 52 (153)
T ss_dssp CEEESCCHHHHHHHHTTC------------------------CCCEECSSHHHHHHHHHHTCCC------C---CSSCCC
T ss_pred EEEEECCHHHHHHHHHHHHCC-C-------------------EEEEEECCHHHHCCHHHCCCCC------C---CCHHHH
T ss_conf 999907599999999998389-9-------------------8999968846500045406522------1---114655
Q ss_pred HCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEEC
Q ss_conf 01660999448852117999998870790999513
Q 001559 657 ISQVEIVISLLPASCHVMVANACIEFKKHLVTASY 691 (1053)
Q Consensus 657 i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~sy 691 (1053)
++++|+|+.|+|+..-..+....-..++.++|++-
T Consensus 53 ~~~~DiVil~v~d~~i~~v~~~l~~~~~ivi~~s~ 87 (153)
T d2i76a2 53 PELNGVVFVIVPDRYIKTVANHLNLGDAVLVHCSG 87 (153)
T ss_dssp CC---CEEECSCTTTHHHHHTTTCCSSCCEEECCS
T ss_pred HCCCCEEEEECCCHHHHHHHHHHCCCCEEEEECCC
T ss_conf 12375899804316556787430245415662143
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.25 E-value=0.0023 Score=35.98 Aligned_cols=97 Identities=13% Similarity=0.095 Sum_probs=42.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHH
Q ss_conf 89949999374306999999993799984322223334436778627999988988899998619996289912799778
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 573 ~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
.+.+|+|+|+|.+|..++..+...| . ..|.+++++.++.+.+ +.+....++...-.+...
T Consensus 28 ~G~~VlV~GaG~iG~~~~~~ak~~G-a------------------~~Vi~~~~~~~~~~~a-~~lGa~~vi~~~~~~~~~ 87 (182)
T d1vj0a2 28 AGKTVVIQGAGPLGLFGVVIARSLG-A------------------ENVIVIAGSPNRLKLA-EEIGADLTLNRRETSVEE 87 (182)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTT-B------------------SEEEEEESCHHHHHHH-HHTTCSEEEETTTSCHHH
T ss_pred CCCEEEEECCCCCCHHHEECCCCCC-C------------------CCCCCCCCCCCCCCCC-CCCCCEEEEECCCCCHHH
T ss_conf 9799999899865222202233332-3------------------2212333322212122-344433787424421477
Q ss_pred H----HHHH--CCCCEEEECCCCCCCHHHHHHHHHHCCEEEEE
Q ss_conf 9----9750--16609994488521179999988707909995
Q 001559 653 L----CKCI--SQVEIVISLLPASCHVMVANACIEFKKHLVTA 689 (1053)
Q Consensus 653 l----~~~i--~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~ 689 (1053)
. .+.. .++|+||++++.......+-.+++.+-.++-+
T Consensus 88 ~~~~i~~~~~~~g~Dvvid~vG~~~~~~~a~~~l~~~G~iv~~ 130 (182)
T d1vj0a2 88 RRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVA 130 (182)
T ss_dssp HHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEEC
T ss_pred HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf 8999998618977338842477446899999973379899999
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.22 E-value=0.0049 Score=33.83 Aligned_cols=107 Identities=12% Similarity=0.111 Sum_probs=72.6
Q ss_pred EEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEE-EEECCHHHHHHHHHCCCCCEEEEECCCCHHHH
Q ss_conf 499993-7430699999999379998432222333443677862799-99889888999986199962899127997789
Q 001559 576 SVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVL-VASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 576 ~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~-v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
||.|+| +|++|+.+++.+.+..++ ++. ..|+.. +...+
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~-------------------~l~~~~d~~~---------------------~~~~~ 40 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDL-------------------TLSAELDAGD---------------------PLSLL 40 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTS-------------------EEEEEECTTC---------------------CTHHH
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCC-------------------EEEEEEECCC---------------------CHHHH
T ss_conf 9899899987799999999858998-------------------8999983278---------------------66660
Q ss_pred HHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEE--CCCHHHHHHHHH-HHHCCCEEEECCCCCHHHHHHH
Q ss_conf 9750166099944885211799999887079099951--367569999999-9975986980688982478999
Q 001559 654 CKCISQVEIVISLLPASCHVMVANACIEFKKHLVTAS--YIDDSMSKLDEK-AKGAGITILGEMGLDPGIDHMM 724 (1053)
Q Consensus 654 ~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~s--y~~~~~~~L~~~-Ak~~Gv~ii~g~G~dPGi~~ml 724 (1053)
. ..++|+||+.+.+.......+.|++.|+++|--+ |.+++...+.+. ++++++.++..--|.-|+.-++
T Consensus 41 ~--~~~~DvvIDFS~p~~~~~~~~~~~~~~~~~ViGTTG~~~~~~~~l~~~~~~~~~ipil~apNfSlGvnll~ 112 (135)
T d1yl7a1 41 T--DGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFTSFVPGVL 112 (135)
T ss_dssp H--TTTCSEEEECCCTTTHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHSCTTCEEEECSCCGGGHHHHH
T ss_pred C--CCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHH
T ss_conf 4--45688899866689999999998864987799544222557999999998568988797487458999999
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=97.21 E-value=0.0031 Score=35.12 Aligned_cols=84 Identities=12% Similarity=0.109 Sum_probs=61.3
Q ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 87899499993-74306999999993799984322223334436778627999988988899998619996289912799
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSD 649 (1053)
Q Consensus 571 ~~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d 649 (1053)
+...++|.||| .|.+|+.++..|.+.| + +|.+.||+...
T Consensus 6 ~~~~~kI~iIGg~G~mG~~la~~L~~~G-~-------------------~V~~~d~~~~~-------------------- 45 (152)
T d2pv7a2 6 NSDIHKIVIVGGYGKLGGLFARYLRASG-Y-------------------PISILDREDWA-------------------- 45 (152)
T ss_dssp CTTCCCEEEETTTSHHHHHHHHHHHTTT-C-------------------CEEEECTTCGG--------------------
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC-C-------------------CCEECCCCCCC--------------------
T ss_conf 8888869999688978999999999769-9-------------------73851331021--------------------
Q ss_pred HHHHHHHHCCCCEEEECCCCCCCHHHHHHHH---HHCCEEEEEECCCHHH
Q ss_conf 7789975016609994488521179999988---7079099951367569
Q 001559 650 HKSLCKCISQVEIVISLLPASCHVMVANACI---EFKKHLVTASYIDDSM 696 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~~~~~~v~~a~i---~~g~~~vD~sy~~~~~ 696 (1053)
.....+.++|+++.++|......+..... ..++.++|++-..+..
T Consensus 46 --~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~iiiD~~Svk~~~ 93 (152)
T d2pv7a2 46 --VAESILANADVVIVSVPINLTLETIERLKPYLTENMLLADLTSVKREP 93 (152)
T ss_dssp --GHHHHHTTCSEEEECSCGGGHHHHHHHHGGGCCTTSEEEECCSCCHHH
T ss_pred --CCCHHHHHCCCCCCCCCHHHHEEEEECCCCCCCCCCEEEEECCCCHHH
T ss_conf --200222211133446666562001101001136895189952647799
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.17 E-value=0.00076 Score=39.12 Aligned_cols=79 Identities=16% Similarity=0.191 Sum_probs=58.7
Q ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCC----C-CCEEEEE
Q ss_conf 7899499993-74306999999993799984322223334436778627999988988899998619----9-9628991
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----P-NAEAVQL 645 (1053)
Q Consensus 572 ~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~-~~~~~~~ 645 (1053)
.++++++|.| ++++|+.+++.|++.| .+|.+++|+.++++++.+.+ . .+.....
T Consensus 12 L~GK~alITGassGIG~aiA~~la~~G--------------------~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~ 71 (269)
T d1xu9a_ 12 LQGKKVIVTGASKGIGREMAYHLAKMG--------------------AHVVVTARSKETLQKVVSHCLELGAASAHYIAG 71 (269)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTT--------------------CEEEEEESCHHHHHHHHHHHHHHTCSEEEEEEC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 597989995888699999999999879--------------------989999898899999999876431132002333
Q ss_pred CCCCHHHHHHHH-------CCCCEEEECCCCC
Q ss_conf 279977899750-------1660999448852
Q 001559 646 DVSDHKSLCKCI-------SQVEIVISLLPAS 670 (1053)
Q Consensus 646 d~~d~~~l~~~i-------~~~DvVI~~~p~~ 670 (1053)
|..+.+...... ...|++++..+..
T Consensus 72 d~~~~~~~~~~~~~~~~~~g~~~~li~nag~~ 103 (269)
T d1xu9a_ 72 TMEDMTFAEQFVAQAGKLMGGLDMLILNHITN 103 (269)
T ss_dssp CTTCHHHHHHHHHHHHHHHTSCSEEEECCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 33157777788877898709863122122234
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=97.16 E-value=0.0049 Score=33.81 Aligned_cols=95 Identities=9% Similarity=0.169 Sum_probs=57.9
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCHH
Q ss_conf 78994999937430699999999379998432222333443677862799998898889999861999628991279977
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 572 ~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
....+|+|+|+|++|..++..+...| . ++.+++++.++.+. +..+.... .+|..+..
T Consensus 29 ~~G~~VlI~GaG~vG~~a~qlak~~G-a-------------------~~i~~~~~~~~~~~-a~~lGad~--~i~~~~~~ 85 (168)
T d1uufa2 29 GPGKKVGVVGIGGLGHMGIKLAHAMG-A-------------------HVVAFTTSEAKREA-AKALGADE--VVNSRNAD 85 (168)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT-C-------------------EEEEEESSGGGHHH-HHHHTCSE--EEETTCHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHCCC-C-------------------CCHHHCCCHHHHHH-HHCCCCCE--EEECCHHH
T ss_conf 99999999666238899999864033-2-------------------10010130559999-75249949--99784156
Q ss_pred HHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEE
Q ss_conf 89975016609994488521179999988707909995
Q 001559 652 SLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTA 689 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~ 689 (1053)
......+++|++|++++..........+++.+=.++.+
T Consensus 86 ~~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1uufa2 86 EMAAHLKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLV 123 (168)
T ss_dssp HHHTTTTCEEEEEECCSSCCCHHHHHTTEEEEEEEEEC
T ss_pred HHHHHCCCCCEEEEEEECCHHHHHHHHHHHCCCEEEEE
T ss_conf 78986378864136665233289999997469889996
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=97.15 E-value=0.0019 Score=36.56 Aligned_cols=80 Identities=14% Similarity=0.263 Sum_probs=58.5
Q ss_pred CCCCCEEEEECC-C--HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHH-HHHHHCCC-CCEEEEE
Q ss_conf 878994999937-4--30699999999379998432222333443677862799998898889-99986199-9628991
Q 001559 571 TKGTSSVLIIGA-G--RVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDA-EEVIEGIP-NAEAVQL 645 (1053)
Q Consensus 571 ~~~~~~vliiGa-G--~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a-~~l~~~~~-~~~~~~~ 645 (1053)
..+.|+++|.|+ | ++|+.+++.|++.| .+|.+.+|+.++. +++.+.++ +...+.+
T Consensus 3 ~l~gK~~lItGaag~~GIG~aiA~~la~~G--------------------a~Vil~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (268)
T d2h7ma1 3 LLDGKRILVSGIITDSSIAFHIARVAQEQG--------------------AQLVLTGFDRLRLIQRITDRLPAKAPLLEL 62 (268)
T ss_dssp TTTTCEEEECCCSSTTCHHHHHHHHHHHTT--------------------CEEEEEECSCHHHHHHHHTTSSSCCCEEEC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHCCCCEEEEEE
T ss_conf 779977999799999779999999999869--------------------999999698589999999870886026764
Q ss_pred CCCCHHHHHHH---H-------CCCCEEEECCCCC
Q ss_conf 27997789975---0-------1660999448852
Q 001559 646 DVSDHKSLCKC---I-------SQVEIVISLLPAS 670 (1053)
Q Consensus 646 d~~d~~~l~~~---i-------~~~DvVI~~~p~~ 670 (1053)
|+++.++...+ + ...|++|++....
T Consensus 63 dv~~~~~~~~~~~~v~~~~~~~~~ld~~i~~ag~~ 97 (268)
T d2h7ma1 63 DVQNEEHLASLAGRVTEAIGAGNKLDGVVHSIGFM 97 (268)
T ss_dssp CTTCHHHHHHHHHHHHHHHCTTCCEEEEEECCCCC
T ss_pred ECCCCCCCCCCCCHHHHCCCCCCCCCEEEECCCCC
T ss_conf 11233221221100121002478753430003446
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=97.13 E-value=0.00082 Score=38.90 Aligned_cols=101 Identities=14% Similarity=0.115 Sum_probs=68.2
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCC-EEE--E---
Q ss_conf 8789949999374306999999993799984322223334436778627999988988899998619996-289--9---
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNA-EAV--Q--- 644 (1053)
Q Consensus 571 ~~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~-~~~--~--- 644 (1053)
..+..+|+|||+|-+|..++......| .+|++.|.++++.+++-...+++ +.. .
T Consensus 26 ~V~pa~VvViGaGvaG~~Aa~~A~~lG--------------------A~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~ 85 (183)
T d1l7da1 26 TVPPARVLVFGVGVAGLQAIATAKRLG--------------------AVVMATDVRAATKEQVESLGGKFITVDDEAMKT 85 (183)
T ss_dssp EECCCEEEEECCSHHHHHHHHHHHHTT--------------------CEEEEECSCSTTHHHHHHTTCEECCC-------
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHCCEEEEECCCCCC
T ss_conf 857728999858689999999999869--------------------989998504788999998605359973245332
Q ss_pred --------------ECCCCHHHHHHHHCCCCEEEECC--CCCCCHH----HHHHHHHHCCEEEEEEC
Q ss_conf --------------12799778997501660999448--8521179----99998870790999513
Q 001559 645 --------------LDVSDHKSLCKCISQVEIVISLL--PASCHVM----VANACIEFKKHLVTASY 691 (1053)
Q Consensus 645 --------------~d~~d~~~l~~~i~~~DvVI~~~--p~~~~~~----v~~a~i~~g~~~vD~sy 691 (1053)
.-....+.+.+.++++|+||.++ |..-.+. -.-...+.|..+||++-
T Consensus 86 ~~~~~gyA~~~s~~~~~~~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvai 152 (183)
T d1l7da1 86 AETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAV 152 (183)
T ss_dssp ----------------CCHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTG
T ss_pred CCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCEEEHHHHHHHCCCCCEEEEEEE
T ss_conf 1003652122179999988999999998623320100237865442105899973589948999864
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=97.12 E-value=0.0023 Score=35.99 Aligned_cols=98 Identities=14% Similarity=0.029 Sum_probs=61.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHH-HHHHHHCCCCCEEEEECC-----
Q ss_conf 99499993743069999999937999843222233344367786279999889888-999986199962899127-----
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKD-AEEVIEGIPNAEAVQLDV----- 647 (1053)
Q Consensus 574 ~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~-a~~l~~~~~~~~~~~~d~----- 647 (1053)
|++|.|-|.|++||.+++.+..+++. .-+.|.++++.. ...+.. .. ........
T Consensus 1 M~~VgINGfGRIGR~v~R~l~~~~di------------------~vvaInd~~~~~~~~~l~~-~~-~~~~~~~~~~~~~ 60 (171)
T d1cf2o1 1 MKAVAINGYGTVGKRVADAIAQQDDM------------------KVIGVSKTRPDFEARMALK-KG-YDLYVAIPERVKL 60 (171)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTSSSE------------------EEEEEEESSCSHHHHHHHH-TT-CCEEESSGGGHHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCC------------------EEEEEECCCCHHHHHHHHH-CC-CCEEECCCCCCEE
T ss_conf 94999983858899999999869996------------------6999835996789999985-69-7367246654021
Q ss_pred ------CCHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEEC
Q ss_conf ------99778997501660999448852117999998870790999513
Q 001559 648 ------SDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASY 691 (1053)
Q Consensus 648 ------~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~sy 691 (1053)
.-......+.+++|+||.|||.+....-.+..+++|+.++-.+.
T Consensus 61 ~~~~~~~v~g~~~~~~~~vDvViEcTG~f~~~~~~~~hl~~G~K~vi~~~ 110 (171)
T d1cf2o1 61 FEKAGIEVAGTVDDMLDEADIVIDCTPEGIGAKNLKMYKEKGIKAIFQGG 110 (171)
T ss_dssp HHHTTCCCCEEHHHHHHTCSEEEECCSTTHHHHHHHHHHHTTCEEEECTT
T ss_pred ECCCCCCCCCCHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEECC
T ss_conf 03457434788657645998999836777888999999986997999889
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.09 E-value=0.0021 Score=36.21 Aligned_cols=121 Identities=14% Similarity=0.062 Sum_probs=71.0
Q ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHH
Q ss_conf 99499993-74306999999993799984322223334436778627999988988899998619996289912799778
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
|++|.|+| +|.+|+.+++.|.++..+. ..++.....+...-........ .....+..+..
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p----------------~~~l~~~~ss~s~g~~~~~~~~--~~~~~~~~~~~- 61 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFD----------------AIRPVFFSTSQLGQAAPSFGGT--TGTLQDAFDLE- 61 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGG----------------GSEEEEEESSSTTSBCCGGGTC--CCBCEETTCHH-
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCC----------------EEEEEEEECCCCCCCCCCCCCC--CEEEECCCCHH-
T ss_conf 9489998985499999999999479988----------------0689995336556656500687--13432045633-
Q ss_pred HHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCE--EEEEEC-C---------CHHH-HHHHHHHHHCCCEEEECCCC
Q ss_conf 997501660999448852117999998870790--999513-6---------7569-99999999759869806889
Q 001559 653 LCKCISQVEIVISLLPASCHVMVANACIEFKKH--LVTASY-I---------DDSM-SKLDEKAKGAGITILGEMGL 716 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~--~vD~sy-~---------~~~~-~~L~~~Ak~~Gv~ii~g~G~ 716 (1053)
.++++|+++.++|..........+.++|+. ++|.|- + -|+. ....+.++.+|..-+.|.--
T Consensus 62 ---~~~~~DivF~a~~~~~s~~~~~~~~~~g~~~~VID~Ss~fR~~~dvplviPEVN~~~i~~~~~~g~~~~ig~~~ 135 (146)
T d1t4ba1 62 ---ALKALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNNGIRTFVGGAA 135 (146)
T ss_dssp ---HHHTCSEEEECSCHHHHHHHHHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred ---HHHCCCEEEEECCCHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCEECCCCCHHHHHHHHHCCCCEEEECCC
T ss_conf ---54157379993683077786399986599756236874222689986888886999999999749862883248
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=97.07 E-value=0.00024 Score=42.35 Aligned_cols=81 Identities=12% Similarity=0.043 Sum_probs=52.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCE--EEEECCCCHHH
Q ss_conf 9499993743069999999937999843222233344367786279999889888999986199962--89912799778
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAE--AVQLDVSDHKS 652 (1053)
Q Consensus 575 ~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~--~~~~d~~d~~~ 652 (1053)
|||+|+|+|.+|..++..|++.| + +|++.+|+.++.+.......+.. .......+.
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G-~-------------------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 58 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQG-H-------------------EVQGWLRVPQPYCSVNLVETDGSIFNESLTANDP-- 58 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-C-------------------EEEEECSSCCSEEEEEEECTTSCEEEEEEEESCH--
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-C-------------------CEEEEECCHHHHHHHCCCCCCCCCCCCCCCCCHH--
T ss_conf 98999995899999999999879-9-------------------4599970778855330456775223332332044--
Q ss_pred HHHHHCCCCEEEECCCCCCCHHHHHHH
Q ss_conf 997501660999448852117999998
Q 001559 653 LCKCISQVEIVISLLPASCHVMVANAC 679 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~~~~~v~~a~ 679 (1053)
+.+..+|+|+.+++......+.+.+
T Consensus 59 --~~~~~~D~iii~vka~~~~~~~~~l 83 (167)
T d1ks9a2 59 --DFLATSDLLLVTLKAWQVSDAVKSL 83 (167)
T ss_dssp --HHHHTCSEEEECSCGGGHHHHHHHH
T ss_pred --HHHCCCCEEEEEECCCCHHHHHHHH
T ss_conf --4423551699961340057888750
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=97.02 E-value=0.00062 Score=39.68 Aligned_cols=75 Identities=25% Similarity=0.285 Sum_probs=55.9
Q ss_pred EEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEE-ECCHHHHHHHHHCC----CCCEEEEECCCCH
Q ss_conf 99993-743069999999937999843222233344367786279999-88988899998619----9962899127997
Q 001559 577 VLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVA-SLYLKDAEEVIEGI----PNAEAVQLDVSDH 650 (1053)
Q Consensus 577 vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~-~r~~~~a~~l~~~~----~~~~~~~~d~~d~ 650 (1053)
++|.| ++++|+.+++.|++.| .+|.+. .|+.+.++++.+.+ .++..+.+|++|.
T Consensus 4 ~lITGas~GIG~a~a~~la~~G--------------------a~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~ 63 (244)
T d1edoa_ 4 VVVTGASRGIGKAIALSLGKAG--------------------CKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKE 63 (244)
T ss_dssp EEETTCSSHHHHHHHHHHHHTT--------------------CEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSH
T ss_pred EEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCH
T ss_conf 9993987689999999999879--------------------98999808987899999999997399289996788999
Q ss_pred HHHHHHHC-------CCCEEEECCCCCC
Q ss_conf 78997501-------6609994488521
Q 001559 651 KSLCKCIS-------QVEIVISLLPASC 671 (1053)
Q Consensus 651 ~~l~~~i~-------~~DvVI~~~p~~~ 671 (1053)
+.+.++++ ..|++||..+...
T Consensus 64 ~~v~~~~~~~~~~~g~iDiLVnnAg~~~ 91 (244)
T d1edoa_ 64 ADVEAMMKTAIDAWGTIDVVVNNAGITR 91 (244)
T ss_dssp HHHHHHHHHHHHHSSCCSEEEECCCCCC
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 9999999999997299772113333332
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=97.02 E-value=0.00048 Score=40.39 Aligned_cols=62 Identities=18% Similarity=0.357 Sum_probs=46.6
Q ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHHH
Q ss_conf 9499993-743069999999937999843222233344367786279999889888999986199962899127997789
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 575 ~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
|||||.| +|.+|+.+++.|.+.+ .+.+.+++.. ....|.+|.+.+
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g---------------------~~v~~~~~~~-------------~~~~Dl~~~~~~ 46 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVG---------------------NLIALDVHSK-------------EFCGDFSNPKGV 46 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTS---------------------EEEEECTTCS-------------SSCCCTTCHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC---------------------CEEEEECCCC-------------CCCCCCCCHHHH
T ss_conf 979998999889999999998689---------------------9999978984-------------442757899999
Q ss_pred HHHHCCC--CEEEECCCCC
Q ss_conf 9750166--0999448852
Q 001559 654 CKCISQV--EIVISLLPAS 670 (1053)
Q Consensus 654 ~~~i~~~--DvVI~~~p~~ 670 (1053)
.+.+++. |+||+|....
T Consensus 47 ~~~i~~~~~D~Vih~Aa~~ 65 (298)
T d1n2sa_ 47 AETVRKLRPDVIVNAAAHT 65 (298)
T ss_dssp HHHHHHHCCSEEEECCCCC
T ss_pred HHHHHHCCCCEEEEECCCC
T ss_conf 9999974998999724434
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.02 E-value=0.0057 Score=33.37 Aligned_cols=90 Identities=18% Similarity=0.135 Sum_probs=61.2
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHH-HHHHCCCCCEEEEECCCC
Q ss_conf 8789949999374306999999993799984322223334436778627999988988899-998619996289912799
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAE-EVIEGIPNAEAVQLDVSD 649 (1053)
Q Consensus 571 ~~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~-~l~~~~~~~~~~~~d~~d 649 (1053)
..+.++|+|+|+|.+|..-++.|.+.| ..+++.+....... .+++ ..+++...-...
T Consensus 9 ~l~~k~vlVvG~G~va~~ka~~ll~~g--------------------a~v~v~~~~~~~~~~~~~~-~~~i~~~~~~~~- 66 (113)
T d1pjqa1 9 QLRDRDCLIVGGGDVAERKARLLLEAG--------------------ARLTVNALTFIPQFTVWAN-EGMLTLVEGPFD- 66 (113)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTT--------------------BEEEEEESSCCHHHHHHHT-TTSCEEEESSCC-
T ss_pred EECCCEEEEECCCHHHHHHHHHHHHCC--------------------CEEEEEECCCCHHHHHHHH-CCCCEEECCCCC-
T ss_conf 817987999878899999999998779--------------------9699982557767899986-588054416778-
Q ss_pred HHHHHHHHCCCCEEEECCCCC-CCHHHHHHHHHHCCEE
Q ss_conf 778997501660999448852-1179999988707909
Q 001559 650 HKSLCKCISQVEIVISLLPAS-CHVMVANACIEFKKHL 686 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~~-~~~~v~~a~i~~g~~~ 686 (1053)
. +.+.++++|+.+++.. .+..+...|-+.|..+
T Consensus 67 ~----~dl~~~~lv~~at~d~~~n~~i~~~a~~~~ilV 100 (113)
T d1pjqa1 67 E----TLLDSCWLAIAATDDDTVNQRVSDAAESRRIFC 100 (113)
T ss_dssp G----GGGTTCSEEEECCSCHHHHHHHHHHHHHTTCEE
T ss_pred H----HHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEE
T ss_conf 7----782787577016899899999999999869989
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=97.01 E-value=0.00099 Score=38.36 Aligned_cols=68 Identities=18% Similarity=0.316 Sum_probs=44.5
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCH
Q ss_conf 87899499993743069999999937999843222233344367786279999889888999986199962899127997
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
....++|.|+|.|.+|+.+++.|...| .+|.+.++....... .... ..
T Consensus 40 el~gk~vgIiG~G~IG~~va~~l~~fg--------------------~~V~~~d~~~~~~~~-~~~~-----------~~ 87 (197)
T d1j4aa1 40 EVRDQVVGVVGTGHIGQVFMQIMEGFG--------------------AKVITYDIFRNPELE-KKGY-----------YV 87 (197)
T ss_dssp CGGGSEEEEECCSHHHHHHHHHHHHTT--------------------CEEEEECSSCCHHHH-HTTC-----------BC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHC--------------------CCCCCCCCCCCCCCC-CCEE-----------EE
T ss_conf 056876778404433156777676401--------------------222235754322322-2215-----------53
Q ss_pred HHHHHHHCCCCEEEECCCCC
Q ss_conf 78997501660999448852
Q 001559 651 KSLCKCISQVEIVISLLPAS 670 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~ 670 (1053)
.++.++++++|+|+.++|..
T Consensus 88 ~~l~~~l~~sDii~~~~plt 107 (197)
T d1j4aa1 88 DSLDDLYKQADVISLHVPDV 107 (197)
T ss_dssp SCHHHHHHHCSEEEECSCCC
T ss_pred CCCCCCCCCCCCCCCCCCCC
T ss_conf 01113322354201348742
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.00 E-value=0.0078 Score=32.51 Aligned_cols=78 Identities=19% Similarity=0.177 Sum_probs=57.4
Q ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC----CHHHHHHHHH-----CCCCCE
Q ss_conf 7899499993-74306999999993799984322223334436778627999988----9888999986-----199962
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASL----YLKDAEEVIE-----GIPNAE 641 (1053)
Q Consensus 572 ~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r----~~~~a~~l~~-----~~~~~~ 641 (1053)
...|++||.| +|.+|+.+++.|.+.| . +|.+.+| +......+.. ..++++
T Consensus 14 ~~~k~iLVTG~tGfIGs~lv~~L~~~g-~-------------------~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (341)
T d1sb8a_ 14 AQPKVWLITGVAGFIGSNLLETLLKLD-Q-------------------KVVGLDNFATGHQRNLDEVRSLVSEKQWSNFK 73 (341)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTT-C-------------------EEEEEECCSSCCHHHHHHHHHHSCHHHHTTEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-C-------------------EEEEEECCCCCCHHHHHHHHHHHHHCCCCCEE
T ss_conf 899989996688789999999999786-9-------------------89999788875255678888754100257726
Q ss_pred EEEECCCCHHHHHHHHCCCCEEEECCCC
Q ss_conf 8991279977899750166099944885
Q 001559 642 AVQLDVSDHKSLCKCISQVEIVISLLPA 669 (1053)
Q Consensus 642 ~~~~d~~d~~~l~~~i~~~DvVI~~~p~ 669 (1053)
.+..|..|...........+.|+++.-.
T Consensus 74 ~~~~d~~d~~~~~~~~~~~~~v~~~~a~ 101 (341)
T d1sb8a_ 74 FIQGDIRNLDDCNNACAGVDYVLHQAAL 101 (341)
T ss_dssp EEECCTTSHHHHHHHHTTCSEEEECCSC
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 8840222222222222222222333433
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.00 E-value=0.0015 Score=37.18 Aligned_cols=81 Identities=19% Similarity=0.192 Sum_probs=57.0
Q ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCC----C--CCEEEE
Q ss_conf 7899499993-74306999999993799984322223334436778627999988988899998619----9--962899
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI----P--NAEAVQ 644 (1053)
Q Consensus 572 ~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~----~--~~~~~~ 644 (1053)
.+++.++|-| ++++|+.+++.|++... .+..|.+++|+.++++++.+.+ + ++..+.
T Consensus 4 L~gKvalITGas~GIG~aiA~~lA~~~~-----------------~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~ 66 (259)
T d1oaaa_ 4 LGCAVCVLTGASRGFGRALAPQLARLLS-----------------PGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAA 66 (259)
T ss_dssp CBSEEEEESSCSSHHHHHHHHHHHTTBC-----------------TTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-----------------CCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 8998899908987899999999986034-----------------89989999899999999999987406996399997
Q ss_pred ECCCCHHHHHHHHC-----------CCCEEEECCCC
Q ss_conf 12799778997501-----------66099944885
Q 001559 645 LDVSDHKSLCKCIS-----------QVEIVISLLPA 669 (1053)
Q Consensus 645 ~d~~d~~~l~~~i~-----------~~DvVI~~~p~ 669 (1053)
+|++|.+.+.+++. ..|++||..+.
T Consensus 67 ~Dvs~~~~v~~l~~~~~~~~~~~~~~~~~lvnnag~ 102 (259)
T d1oaaa_ 67 ADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAAT 102 (259)
T ss_dssp CCTTSHHHHHHHHHHHHHSCCCTTCCEEEEEECCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 558999999999877887620036743799955400
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=96.98 E-value=0.001 Score=38.30 Aligned_cols=69 Identities=17% Similarity=0.185 Sum_probs=35.1
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCH
Q ss_conf 87899499993743069999999937999843222233344367786279999889888999986199962899127997
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
....++++|+|+|.+|+.+|..|...| .+|.|.+.++-++-+. ....+++
T Consensus 20 ~laGk~vvV~GYG~vGrG~A~~~rg~G--------------------a~V~V~E~DPi~alqA--~mdGf~v-------- 69 (163)
T d1v8ba1 20 LISGKIVVICGYGDVGKGCASSMKGLG--------------------ARVYITEIDPICAIQA--VMEGFNV-------- 69 (163)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHHT--------------------CEEEEECSCHHHHHHH--HTTTCEE--------
T ss_pred EECCCEEEEECCCCCCHHHHHHHHHCC--------------------CEEEEEECCCHHHHHH--HHCCCCC--------
T ss_conf 254878999534532456899997398--------------------9999983575316889--8658815--------
Q ss_pred HHHHHHHCCCCEEEECCCC
Q ss_conf 7899750166099944885
Q 001559 651 KSLCKCISQVEIVISLLPA 669 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~ 669 (1053)
..+.+.++.+|++|.+|+.
T Consensus 70 ~~~~~a~~~aDi~vTaTGn 88 (163)
T d1v8ba1 70 VTLDEIVDKGDFFITCTGN 88 (163)
T ss_dssp CCHHHHTTTCSEEEECCSS
T ss_pred CCHHHCCCCCCEEEECCCC
T ss_conf 7645712427699975799
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=96.98 E-value=0.00022 Score=42.61 Aligned_cols=131 Identities=12% Similarity=0.118 Sum_probs=76.4
Q ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEE-EEEECCHHH-HHHHHHCCCCCEEEEECCCCH
Q ss_conf 99499993-743069999999937999843222233344367786279-999889888-999986199962899127997
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRV-LVASLYLKD-AEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 574 ~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v-~v~~r~~~~-a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
..||.|.| +|++|+.+++.+.+..++ ++ ...++.... ...-...+.... ..++.-.
T Consensus 4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~-------------------~lv~~~~~~~~~~~g~d~~~~~~~~--~~~~~~~ 62 (162)
T d1diha1 4 NIRVAIAGAGGRMGRQLIQAALALEGV-------------------QLGAALEREGSSLLGSDAGELAGAG--KTGVTVQ 62 (162)
T ss_dssp BEEEEETTTTSHHHHHHHHHHHHSTTE-------------------ECCCEECCTTCTTCSCCTTCSSSSS--CCSCCEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCC-------------------EEEEEEECCCCHHCCCHHHHHHCCC--CCCCEEE
T ss_conf 778999899887899999999858997-------------------8999983144121063066650456--6783230
Q ss_pred HHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEE--CCCHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHH
Q ss_conf 7899750166099944885211799999887079099951--3675699999999975986980688982478999999
Q 001559 651 KSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTAS--YIDDSMSKLDEKAKGAGITILGEMGLDPGIDHMMAMK 727 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~s--y~~~~~~~L~~~Ak~~Gv~ii~g~G~dPGi~~mla~~ 727 (1053)
..+.+....+|++|..+.+.......+.|.+.++++|--+ +.+++...+.+.+++. .++..--|.-|+.+++...
T Consensus 63 ~~~~~~~~~~DViIDFs~p~~~~~~~~~a~~~~~~~ViGTTG~~~~~~~~i~~~a~~i--pi~~apN~SlGi~~~~~~~ 139 (162)
T d1diha1 63 SSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADI--AIVFAANFSMTFANGAVRS 139 (162)
T ss_dssp SCSTTTTTSCSEEEECSCHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHTTTS--CEEECSCCCHHHHHHHHHH
T ss_pred CCHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCC--CEEEECCCCHHHHHHHHHH
T ss_conf 5688874156569994458888999999973563069823777678899999974899--8899761028999999999
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.97 E-value=0.0024 Score=35.88 Aligned_cols=77 Identities=21% Similarity=0.137 Sum_probs=55.7
Q ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHH-----HHHHHHH---C--CCCCEE
Q ss_conf 99499993-74306999999993799984322223334436778627999988988-----8999986---1--999628
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK-----DAEEVIE---G--IPNAEA 642 (1053)
Q Consensus 574 ~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~-----~a~~l~~---~--~~~~~~ 642 (1053)
++++||.| +|++|+.++++|.+.| + +|..++|... +...+.. . ...++.
T Consensus 1 ~k~~LVTGatGfiG~~lv~~Ll~~g-~-------------------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (339)
T d1n7ha_ 1 RKIALITGITGQDGSYLTEFLLGKG-Y-------------------EVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKL 60 (339)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-C-------------------EEEEEECCCSSCCCTTTTTTC--------CCEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-C-------------------EEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf 9989996886489999999999784-9-------------------8999978885555143666542233404564599
Q ss_pred EEECCCCHHHHHHHHC--CCCEEEECCCCC
Q ss_conf 9912799778997501--660999448852
Q 001559 643 VQLDVSDHKSLCKCIS--QVEIVISLLPAS 670 (1053)
Q Consensus 643 ~~~d~~d~~~l~~~i~--~~DvVI~~~p~~ 670 (1053)
+..|+++.+.+.+.++ +.|+||+++...
T Consensus 61 ~~~Di~~~~~~~~~~~~~~~D~Vih~Aa~~ 90 (339)
T d1n7ha_ 61 HYADLTDASSLRRWIDVIKPDEVYNLAAQS 90 (339)
T ss_dssp EECCTTCHHHHHHHHHHHCCSEEEECCSCC
T ss_pred EECCCCCHHHHHHHHHHHCCCHHHHCCCCC
T ss_conf 976366889999998641341122012213
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=96.97 E-value=0.00017 Score=43.33 Aligned_cols=75 Identities=12% Similarity=0.136 Sum_probs=53.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCC-------CCCEEEE
Q ss_conf 789949999374306999999993799984322223334436778627999988988899998619-------9962899
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI-------PNAEAVQ 644 (1053)
Q Consensus 572 ~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~-------~~~~~~~ 644 (1053)
.+.+||.|||+|.+|..++..|+..+-. .++.+.|++.++++..+..+ .......
T Consensus 3 ~~~~KI~IIGaG~VG~~~A~~l~~~~~~------------------~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~ 64 (146)
T d1ez4a1 3 PNHQKVVLVGDGAVGSSYAFAMAQQGIA------------------EEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS 64 (146)
T ss_dssp TTBCEEEEECCSHHHHHHHHHHHHHTCC------------------SEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCC------------------CEEEEEECCCCHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf 9997799989888899999999956977------------------3799863022156778987714464458856740
Q ss_pred ECCCCHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 127997789975016609994488521
Q 001559 645 LDVSDHKSLCKCISQVEIVISLLPASC 671 (1053)
Q Consensus 645 ~d~~d~~~l~~~i~~~DvVI~~~p~~~ 671 (1053)
.|.+ .++++|+||.+++...
T Consensus 65 ---~d~~----~~~~adivvitag~~~ 84 (146)
T d1ez4a1 65 ---GEYS----DCKDADLVVITAGAPQ 84 (146)
T ss_dssp ---CCGG----GGTTCSEEEECCCC--
T ss_pred ---CCHH----HHCCCCEEEEECCCCC
T ss_conf ---6577----7420668998435566
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.94 E-value=0.0027 Score=35.52 Aligned_cols=99 Identities=16% Similarity=0.041 Sum_probs=59.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCC-H
Q ss_conf 789949999374306999999993799984322223334436778627999988988899998619996289912799-7
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSD-H 650 (1053)
Q Consensus 572 ~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d-~ 650 (1053)
.+..+|+|+|+|++|..++..+...| . .+|.+++++.+|.+.. +.+.-..++...-.+ .
T Consensus 26 ~~g~~VlI~GaG~vGl~~~q~ak~~G-a------------------~~Vi~~d~~~~r~~~a-~~lGa~~~i~~~~~~~~ 85 (174)
T d1jqba2 26 EMGSSVVVIGIGAVGLMGIAGAKLRG-A------------------GRIIGVGSRPICVEAA-KFYGATDILNYKNGHIE 85 (174)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHTTT-C------------------SCEEEECCCHHHHHHH-HHHTCSEEECGGGSCHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCC-C------------------CCCCCCCCHHHHHHHH-HHHCCCCCCCCCCHHHH
T ss_conf 99998999747750244455430222-3------------------2221002104667778-76076332442102578
Q ss_pred HHHHHHHC--CCCEEEECCCCCCCHHHHHHHHHHCCEEEEEE
Q ss_conf 78997501--66099944885211799999887079099951
Q 001559 651 KSLCKCIS--QVEIVISLLPASCHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 651 ~~l~~~i~--~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~s 690 (1053)
+.+.+... ++|+||++++........-.+++.+-.++.+.
T Consensus 86 ~~v~~~t~g~G~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G 127 (174)
T d1jqba2 86 DQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKPGGIISNIN 127 (174)
T ss_dssp HHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECC
T ss_pred HHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 888877512676437981588799999999872598999996
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.93 E-value=0.0017 Score=36.86 Aligned_cols=71 Identities=23% Similarity=0.219 Sum_probs=45.7
Q ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCH-HHHHHHHHCCC--CCEEEEECCCC
Q ss_conf 99499993-7430699999999379998432222333443677862799998898-88999986199--96289912799
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL-KDAEEVIEGIP--NAEAVQLDVSD 649 (1053)
Q Consensus 574 ~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~-~~a~~l~~~~~--~~~~~~~d~~d 649 (1053)
++||+|.| +|.+|+.++..|.+.| . +|..+++.. .+.+.+..... +++....
T Consensus 1 kKKIlVtG~sGfiG~~lv~~L~~~g-~-------------------~V~~~d~~~~~~~~~~~~~~~~~~~d~~~~---- 56 (312)
T d2b69a1 1 RKRILITGGAGFVGSHLTDKLMMDG-H-------------------EVTVVDNFFTGRKRNVEHWIGHENFELINH---- 56 (312)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-C-------------------EEEEEECCSSCCGGGTGGGTTCTTEEEEEC----
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-C-------------------EEEEEECCCCCCHHHHHHHCCCCCEEEEEH----
T ss_conf 9899997897389999999999786-9-------------------899996887677777887447775389736----
Q ss_pred HHHHHHHHCCCCEEEECCCC
Q ss_conf 77899750166099944885
Q 001559 650 HKSLCKCISQVEIVISLLPA 669 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~ 669 (1053)
+.+...+.++|+||+++..
T Consensus 57 -~~~~~~~~~~d~VihlAa~ 75 (312)
T d2b69a1 57 -DVVEPLYIEVDQIYHLASP 75 (312)
T ss_dssp -CTTSCCCCCCSEEEECCSC
T ss_pred -HHHHHHHCCCCEEEECCCC
T ss_conf -7778877499999988634
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=96.93 E-value=0.0072 Score=32.73 Aligned_cols=111 Identities=17% Similarity=0.125 Sum_probs=53.5
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCH
Q ss_conf 87899499993743069999999937999843222233344367786279999889888999986199962899127997
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
+.+.++|.|-|.|.+|+.++++|.+.| ..|.+.|.+..+.......- .+.+ +.
T Consensus 24 ~L~gk~v~IqG~G~VG~~~A~~L~~~G--------------------akvvv~d~d~~~~~~~~~~g--~~~~-----~~ 76 (201)
T d1c1da1 24 SLDGLTVLVQGLGAVGGSLASLAAEAG--------------------AQLLVADTDTERVAHAVALG--HTAV-----AL 76 (201)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTT--------------------CEEEEECSCHHHHHHHHHTT--CEEC-----CG
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--------------------CEEEEECCHHHHHHHHHHHC--CCCC-----CC
T ss_conf 889999999898889999999999779--------------------98999616077777777623--5556-----74
Q ss_pred HHHHHHHCCCCEEEECCCC-CCCHHHHHHHHHHCCEEEEEECC-CHHHHHHHHHHHHCCCEEEEC
Q ss_conf 7899750166099944885-21179999988707909995136-756999999999759869806
Q 001559 651 KSLCKCISQVEIVISLLPA-SCHVMVANACIEFKKHLVTASYI-DDSMSKLDEKAKGAGITILGE 713 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~-~~~~~v~~a~i~~g~~~vD~sy~-~~~~~~L~~~Ak~~Gv~ii~g 713 (1053)
+++ +-.+||+++-|.-. ..+...++. -++.++--.-+ +-.....++..+++|+.++++
T Consensus 77 ~~~--~~~~~DI~iPcA~~~~I~~~~a~~---i~ak~i~e~AN~p~~~~~~~~~L~~rgI~~iPD 136 (201)
T d1c1da1 77 EDV--LSTPCDVFAPCAMGGVITTEVART---LDCSVVAGAANNVIADEAASDILHARGILYAPD 136 (201)
T ss_dssp GGG--GGCCCSEEEECSCSCCBCHHHHHH---CCCSEECCSCTTCBCSHHHHHHHHHTTCEECCH
T ss_pred CCC--CCCCCEEEECCCCCCCCCHHHHHH---HHHHEEECCCCCCCCHHHHHHHHCCCCEEEEEH
T ss_conf 312--343542660245456666888730---101135635899755043899960256399843
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=96.92 E-value=0.0042 Score=34.24 Aligned_cols=79 Identities=15% Similarity=0.108 Sum_probs=53.7
Q ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHH---HHHHHCCCC--CEEEEE
Q ss_conf 7899499993-7430699999999379998432222333443677862799998898889---999861999--628991
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDA---EEVIEGIPN--AEAVQL 645 (1053)
Q Consensus 572 ~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a---~~l~~~~~~--~~~~~~ 645 (1053)
.+.|.|+|.| ++++|+.+|+.|++.| . ++.+..|+.++. .++....++ +....+
T Consensus 3 l~gK~vlITGgs~GIG~~~A~~la~~G-~-------------------~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (254)
T d1sbya1 3 LTNKNVIFVAALGGIGLDTSRELVKRN-L-------------------KNFVILDRVENPTALAELKAINPKVNITFHTY 62 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTC-C-------------------SEEEEEESSCCHHHHHHHHHHCTTSEEEEEEC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-C-------------------EEEEEECCCCCHHHHHHHHHHCCCCCEEEEEE
T ss_conf 899999993488889999999999879-9-------------------79999788556899999996178998799993
Q ss_pred CCC-CHHHHHHHH-------CCCCEEEECCCCC
Q ss_conf 279-977899750-------1660999448852
Q 001559 646 DVS-DHKSLCKCI-------SQVEIVISLLPAS 670 (1053)
Q Consensus 646 d~~-d~~~l~~~i-------~~~DvVI~~~p~~ 670 (1053)
|++ +.+++.+++ ...|++||+.+..
T Consensus 63 d~~~~~~~~~~~~~~~~~~~g~iDilvnnAG~~ 95 (254)
T d1sbya1 63 DVTVPVAESKKLLKKIFDQLKTVDILINGAGIL 95 (254)
T ss_dssp CTTSCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred ECCCCHHHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 248999999999999999829987898478789
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.91 E-value=0.0018 Score=36.59 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=13.6
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEECCCC
Q ss_conf 4999985521289899999629992524799
Q 001559 206 LVFIFTGSGNVSLGAQEIFKLLPHTFVEPSR 236 (1053)
Q Consensus 206 ~~v~i~G~G~vg~gA~~~~~~Lga~~V~~~d 236 (1053)
.+++|.|.|.+|+|..+.++.+|++ |.+.|
T Consensus 25 k~v~V~GyG~iG~g~A~~~rg~G~~-V~v~e 54 (163)
T d1li4a1 25 KVAVVAGYGDVGKGCAQALRGFGAR-VIITE 54 (163)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCE-EEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCE-EEEEE
T ss_conf 8899956552047889987757983-58541
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.91 E-value=0.0051 Score=33.71 Aligned_cols=76 Identities=21% Similarity=0.220 Sum_probs=54.8
Q ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC----------HHHHHHHHH-CCCCCE
Q ss_conf 99499993-743069999999937999843222233344367786279999889----------888999986-199962
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY----------LKDAEEVIE-GIPNAE 641 (1053)
Q Consensus 574 ~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~----------~~~a~~l~~-~~~~~~ 641 (1053)
.+||||.| +|++|+.+++.|++.| . +|.+.|+. .++.+.+.. ...++.
T Consensus 2 ~kKILITG~tGfIGs~lv~~Ll~~g-~-------------------~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (346)
T d1ek6a_ 2 AEKVLVTGGAGYIGSHTVLELLEAG-Y-------------------LPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVE 61 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTT-C-------------------CEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-C-------------------EEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCE
T ss_conf 9729997897389999999999786-9-------------------7999977874213443206788888873378717
Q ss_pred EEEECCCCHHHHHHHHCCCC--EEEECCCC
Q ss_conf 89912799778997501660--99944885
Q 001559 642 AVQLDVSDHKSLCKCISQVE--IVISLLPA 669 (1053)
Q Consensus 642 ~~~~d~~d~~~l~~~i~~~D--vVI~~~p~ 669 (1053)
.+.+|++|.+.+.+.+.+.+ +++++...
T Consensus 62 ~~~~Dl~d~~~l~~~~~~~~~~~i~h~Aa~ 91 (346)
T d1ek6a_ 62 FEEMDILDQGALQRLFKKYSFMAVIHFAGL 91 (346)
T ss_dssp EEECCTTCHHHHHHHHHHCCEEEEEECCSC
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 999564464012222123342332000313
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.91 E-value=0.0024 Score=35.88 Aligned_cols=90 Identities=12% Similarity=0.187 Sum_probs=55.7
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCC-CCEEEEECCCC
Q ss_conf 87899499993743069999999937999843222233344367786279999889888999986199-96289912799
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NAEAVQLDVSD 649 (1053)
Q Consensus 571 ~~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~~~~~~d~~d 649 (1053)
+.+.++|+|+|.|..|..++++|.+.| .+|.+.|.+..... .+.+. ......... +
T Consensus 2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g--------------------~~v~~~D~~~~~~~--~~~~~~~~~~~~~~~-~ 58 (93)
T d2jfga1 2 DYQGKNVVIIGLGLTGLSCVDFFLARG--------------------VTPRVMDTRMTPPG--LDKLPEAVERHTGSL-N 58 (93)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHTT--------------------CCCEEEESSSSCTT--GGGSCTTSCEEESBC-C
T ss_pred CCCCCEEEEEEECHHHHHHHHHHHHCC--------------------CEEEEEECCCCCHH--HHHHHHCCCEEECCC-C
T ss_conf 868999999967899999999999779--------------------98999608768255--789840651552566-3
Q ss_pred HHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEE
Q ss_conf 77899750166099944885211799999887079099
Q 001559 650 HKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLV 687 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~v 687 (1053)
. ..+.++|.||-..+.....++...+.+.|+.++
T Consensus 59 ~----~~~~~~d~vi~SPGi~~~~~~~~~a~~~gi~ii 92 (93)
T d2jfga1 59 D----EWLMAADLIVASPGIALAHPSLSAAADAGIEIV 92 (93)
T ss_dssp H----HHHHHCSEEEECTTSCTTSHHHHHHHHTTCEEE
T ss_pred H----HHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEE
T ss_conf 4----322258789988987999999999998699748
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=96.90 E-value=0.0029 Score=35.32 Aligned_cols=88 Identities=15% Similarity=0.293 Sum_probs=59.9
Q ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEE-EEECCHHHHHHHHHCCCCCEEEEECCCCHHH
Q ss_conf 9499993-7430699999999379998432222333443677862799-9988988899998619996289912799778
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVL-VASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 575 ~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~-v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
|||.|.| +|++|+.++..+.+.+ + ++. ..+++.
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~-~-------------------~l~~~id~~~------------------------- 35 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKG-H-------------------ELVLKVDVNG------------------------- 35 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-C-------------------EEEEEEETTE-------------------------
T ss_pred CEEEEECCCCHHHHHHHHHHHCCC-C-------------------EEEEEECCCC-------------------------
T ss_conf 989998888877899999996699-9-------------------5999977885-------------------------
Q ss_pred HHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEE--CCCHHHHHHHHHHHHCCC
Q ss_conf 99750166099944885211799999887079099951--367569999999997598
Q 001559 653 LCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTAS--YIDDSMSKLDEKAKGAGI 708 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~s--y~~~~~~~L~~~Ak~~Gv 708 (1053)
.+.+.++|+||+.+.+.......+.|++.++++|--+ |.++....+.+.+++..+
T Consensus 36 -~~~~~~~DVvIDFS~p~~~~~~l~~~~~~~~p~ViGTTG~~~~~~~~i~~~ak~~pv 92 (128)
T d1vm6a3 36 -VEELDSPDVVIDFSSPEALPKTVDLCKKYRAGLVLGTTALKEEHLQMLRELSKEVPV 92 (128)
T ss_dssp -EEECSCCSEEEECSCGGGHHHHHHHHHHHTCEEEECCCSCCHHHHHHHHHHTTTSEE
T ss_pred -HHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCE
T ss_conf -788455999999268899999999987459977997178999999999998715999
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.89 E-value=0.0069 Score=32.85 Aligned_cols=80 Identities=25% Similarity=0.281 Sum_probs=55.4
Q ss_pred CEEEEE-C-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHH---HHHCC----CCCEEEEE
Q ss_conf 949999-3-743069999999937999843222233344367786279999889888999---98619----99628991
Q 001559 575 SSVLII-G-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEE---VIEGI----PNAEAVQL 645 (1053)
Q Consensus 575 ~~vlii-G-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~---l~~~~----~~~~~~~~ 645 (1053)
+||++| | ++++|+.+++.|++.|.. -..+.+..|+.+..++ .++.+ .++..+.+
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga~-----------------v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 64 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPSQ-----------------SFKVYATLRDLKTQGRLWEAARALACPPGSLETLQL 64 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTC-----------------CEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEEC
T ss_pred CCEEEECCCCCHHHHHHHHHHHHCCCC-----------------EEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 988999158878999999999987997-----------------689998627756568899999997526884478851
Q ss_pred CCCCHHHHHHHHCC-----CCEEEECCCCCC
Q ss_conf 27997789975016-----609994488521
Q 001559 646 DVSDHKSLCKCISQ-----VEIVISLLPASC 671 (1053)
Q Consensus 646 d~~d~~~l~~~i~~-----~DvVI~~~p~~~ 671 (1053)
|++|.+...+++.. .|+++|..+...
T Consensus 65 Dv~~~~~~~~~~~~~~~g~idilvnnag~~~ 95 (285)
T d1jtva_ 65 DVRDSKSVAAARERVTEGRVDVLVCNAGLGL 95 (285)
T ss_dssp CTTCHHHHHHHHHTCTTSCCSEEEECCCCCC
T ss_pred CCCCHHHHHHHHHHCCCCCHHHHHHCCCCCC
T ss_conf 2212676556665202231023210122222
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.89 E-value=0.0044 Score=34.13 Aligned_cols=77 Identities=16% Similarity=0.185 Sum_probs=51.6
Q ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCC-CEEEEECCCCHHH
Q ss_conf 94999937-430699999999379998432222333443677862799998898889999861999-6289912799778
Q 001559 575 SSVLIIGA-GRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPN-AEAVQLDVSDHKS 652 (1053)
Q Consensus 575 ~~vliiGa-G~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~-~~~~~~d~~d~~~ 652 (1053)
.||.|+|| |.+|..++..|+..+-+ .++.+.|.+..+++.+--.... +.....-. ....
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~~~~------------------~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~-~~~~ 61 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNSPLV------------------SRLTLYDIAHTPGVAADLSHIETRATVKGYL-GPEQ 61 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTC------------------SEEEEEESSSHHHHHHHHTTSSSSCEEEEEE-SGGG
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCC------------------CEEEEEECCCCCHHHHHHHHHHHHCCCCEEE-CCCC
T ss_conf 95999999985999999999828966------------------2489973445512557775332004787398-6798
Q ss_pred HHHHHCCCCEEEECCCCC
Q ss_conf 997501660999448852
Q 001559 653 LCKCISQVEIVISLLPAS 670 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~ 670 (1053)
..+.++++|+||.+.+..
T Consensus 62 ~~~~~~~aDivVitag~~ 79 (144)
T d1mlda1 62 LPDCLKGCDVVVIPAGVP 79 (144)
T ss_dssp HHHHHTTCSEEEECCSCC
T ss_pred HHHHHCCCCEEEECCCCC
T ss_conf 689837998999878867
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.89 E-value=0.0032 Score=35.00 Aligned_cols=42 Identities=12% Similarity=0.040 Sum_probs=24.7
Q ss_pred HHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 2105979499972013689996439998998551899943999984
Q 001559 296 KKIAPYASVIVNCMYWEQRFPRLLSTQQLQDLVRKGCPLVGISDIT 341 (1053)
Q Consensus 296 ~~~~~~~diiIn~~~~~~~~P~Lit~e~v~~l~k~~~~gsvIvDis 341 (1053)
++.++.+|+|+.+.-..+..-.+|+.+.++.| | +++++|.+|
T Consensus 87 ~ell~~sDiv~~~~pl~~~t~~li~~~~l~~m-k---~~ailIN~~ 128 (181)
T d1qp8a1 87 EEALREARAAVCALPLNKHTRGLVKYQHLALM-A---EDAVFVNVG 128 (181)
T ss_dssp HHHHTTCSEEEECCCCSTTTTTCBCHHHHTTS-C---TTCEEEECS
T ss_pred HHHHHCCCHHHCCCCCCCCCCCCCCCCEEEEC-C---CCCEEEECC
T ss_conf 23220000211012122244211100113201-2---540687415
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.88 E-value=0.0021 Score=36.28 Aligned_cols=80 Identities=21% Similarity=0.233 Sum_probs=55.6
Q ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC---------HHHHHHHHHCCC-C
Q ss_conf 87899499993-743069999999937999843222233344367786279999889---------888999986199-9
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY---------LKDAEEVIEGIP-N 639 (1053)
Q Consensus 571 ~~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~---------~~~a~~l~~~~~-~ 639 (1053)
..+.+.++|.| ++++|+.++..|++.| . .|.+.+++ .+.++++.+.+. .
T Consensus 4 ~l~gKvalITGas~GIG~aiA~~la~~G-a-------------------~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (302)
T d1gz6a_ 4 RFDGRVVLVTGAGGGLGRAYALAFAERG-A-------------------LVVVNDLGGDFKGVGKGSSAADKVVEEIRRR 63 (302)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTT-C-------------------EEEEECCCBCTTSCBCCSHHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC-C-------------------EEEEEECCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 8599989992878889999999999869-9-------------------8999847721444221389999999997420
Q ss_pred CEEEEECCCCHHHHHHHH-------CCCCEEEECCCCC
Q ss_conf 628991279977899750-------1660999448852
Q 001559 640 AEAVQLDVSDHKSLCKCI-------SQVEIVISLLPAS 670 (1053)
Q Consensus 640 ~~~~~~d~~d~~~l~~~i-------~~~DvVI~~~p~~ 670 (1053)
.....+|+.|.+...+++ ...|++||..+..
T Consensus 64 ~~~~~~d~~~~~~~~~~v~~~~~~~G~iDiLVnNAGi~ 101 (302)
T d1gz6a_ 64 GGKAVANYDSVEAGEKLVKTALDTFGRIDVVVNNAGIL 101 (302)
T ss_dssp TCEEEEECCCGGGHHHHHHHHHHHTSCCCEEEECCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 35532221047899999999999729999999888169
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.87 E-value=0.0067 Score=32.94 Aligned_cols=76 Identities=25% Similarity=0.177 Sum_probs=53.8
Q ss_pred CEE-EEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHH-----HHHHHHH----C-CCCCEE
Q ss_conf 949-9993-74306999999993799984322223334436778627999988988-----8999986----1-999628
Q 001559 575 SSV-LIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK-----DAEEVIE----G-IPNAEA 642 (1053)
Q Consensus 575 ~~v-liiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~-----~a~~l~~----~-~~~~~~ 642 (1053)
|+| ||.| +|++|+.++++|.+.| + +|..++|... +.+.+.. . ..+++.
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g-~-------------------~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKG-Y-------------------EVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKL 60 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-C-------------------EEEEEECCCSSCCCTTTGGGC---------CEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-C-------------------EEEEEECCCCCCCHHHHHHHHHCHHHHCCCCCEE
T ss_conf 9889990477689999999999783-9-------------------8999988875455012788753535532478189
Q ss_pred EEECCCCHHHHHHHHCC--CCEEEECCCCC
Q ss_conf 99127997789975016--60999448852
Q 001559 643 VQLDVSDHKSLCKCISQ--VEIVISLLPAS 670 (1053)
Q Consensus 643 ~~~d~~d~~~l~~~i~~--~DvVI~~~p~~ 670 (1053)
+..|++|.+.+.+++.+ .++|+.++...
T Consensus 61 ~~~Dl~d~~~~~~~~~~~~~~~v~~~~a~~ 90 (347)
T d1t2aa_ 61 HYGDLTDSTCLVKIINEVKPTEIYNLGAQS 90 (347)
T ss_dssp EECCTTCHHHHHHHHHHHCCSEEEECCSCC
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEEEEECC
T ss_conf 991467806547888635653133200013
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=96.85 E-value=0.0011 Score=37.96 Aligned_cols=76 Identities=16% Similarity=0.171 Sum_probs=53.0
Q ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC-HHH-HHHHH--HCCCCCEEEEECCCC
Q ss_conf 9499993-743069999999937999843222233344367786279999889-888-99998--619996289912799
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY-LKD-AEEVI--EGIPNAEAVQLDVSD 649 (1053)
Q Consensus 575 ~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~-~~~-a~~l~--~~~~~~~~~~~d~~d 649 (1053)
|||||.| +|.+|+.+++.|++.+ . ..+...++. ... .+.+. ...++++.+.+|++|
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g-~------------------~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d 61 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNT-Q------------------DTVVNIDKLTYAGNLESLSDISESNRYNFEHADICD 61 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHC-S------------------CEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-C------------------CEEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCC
T ss_conf 979998887679999999999779-9------------------789998479864427778765316884799865789
Q ss_pred HHHHHHHHCC--CCEEEECCCC
Q ss_conf 7789975016--6099944885
Q 001559 650 HKSLCKCISQ--VEIVISLLPA 669 (1053)
Q Consensus 650 ~~~l~~~i~~--~DvVI~~~p~ 669 (1053)
...+.+++.+ +|+|++|+..
T Consensus 62 ~~~l~~~~~~~~~d~VihlAa~ 83 (361)
T d1kewa_ 62 SAEITRIFEQYQPDAVMHLAAE 83 (361)
T ss_dssp HHHHHHHHHHHCCSEEEECCSC
T ss_pred HHHHHHHHHHCCCCEEEECCCC
T ss_conf 8999999975799999989601
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=96.75 E-value=0.0094 Score=31.98 Aligned_cols=79 Identities=24% Similarity=0.291 Sum_probs=56.9
Q ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCH---HHHHHHHHCC----CCCEEEEE
Q ss_conf 99499993-7430699999999379998432222333443677862799998898---8899998619----99628991
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL---KDAEEVIEGI----PNAEAVQL 645 (1053)
Q Consensus 574 ~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~---~~a~~l~~~~----~~~~~~~~ 645 (1053)
...++|.| +|++|+.+++.|++.| . ..|.+++|+. +.++++.+.+ .++.++.+
T Consensus 9 ~gt~lVTGgs~GIG~a~a~~la~~G-a------------------~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~ 69 (259)
T d2fr1a1 9 TGTVLVTGGTGGVGGQIARWLARRG-A------------------PHLLLVSRSGPDADGAGELVAELEALGARTTVAAC 69 (259)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHT-C------------------SEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-C------------------CEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 5999998987689999999999879-9------------------88999708864779999999999743033100023
Q ss_pred CCCCHHHHHHHHCC------CCEEEECCCCCC
Q ss_conf 27997789975016------609994488521
Q 001559 646 DVSDHKSLCKCISQ------VEIVISLLPASC 671 (1053)
Q Consensus 646 d~~d~~~l~~~i~~------~DvVI~~~p~~~ 671 (1053)
|++|.+.+.+++.. .|.|+++.+...
T Consensus 70 Dv~d~~~~~~~~~~i~~~~~i~~vv~~ag~~~ 101 (259)
T d2fr1a1 70 DVTDRESVRELLGGIGDDVPLSAVFHAAATLD 101 (259)
T ss_dssp CTTCHHHHHHHHHTSCTTSCEEEEEECCCCCC
T ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 43038999876402320113312343222222
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.74 E-value=0.0016 Score=37.06 Aligned_cols=44 Identities=25% Similarity=0.306 Sum_probs=38.9
Q ss_pred CEEEEE-CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCC
Q ss_conf 949999-3743069999999937999843222233344367786279999889888999986199
Q 001559 575 SSVLII-GAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP 638 (1053)
Q Consensus 575 ~~vlii-GaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~ 638 (1053)
|||.|+ |+|.+|+.++..|++.| + +|.+.+|++++++++.+.+.
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G-~-------------------~V~l~~R~~e~~~~l~~~i~ 45 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLG-H-------------------EIVVGSRREEKAEAKAAEYR 45 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTT-C-------------------EEEEEESSHHHHHHHHHHHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHCC-C-------------------EEEEEECCHHHHHHHHHHHH
T ss_conf 979999488399999999999879-9-------------------89999799999999999998
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.71 E-value=0.0029 Score=35.35 Aligned_cols=41 Identities=20% Similarity=0.183 Sum_probs=34.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHH
Q ss_conf 9949999374306999999993799984322223334436778627999988988899998
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVI 634 (1053)
Q Consensus 574 ~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~ 634 (1053)
.++|.|||+|.+|+.+|..++..| .+|.+.|++.+.+++..
T Consensus 4 IkkvaViGaG~mG~~iA~~~a~~G--------------------~~V~l~D~~~~~l~~a~ 44 (192)
T d1f0ya2 4 VKHVTVIGGGLMGAGIAQVAAATG--------------------HTVVLVDQTEDILAKSK 44 (192)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--------------------CEEEEECSCHHHHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHCC--------------------CCEEEEECCHHHHHHHH
T ss_conf 689999896889999999999589--------------------91799978747777777
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.64 E-value=0.0034 Score=34.86 Aligned_cols=78 Identities=18% Similarity=0.211 Sum_probs=58.1
Q ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCC-CCEEEEECCC
Q ss_conf 87899499993-743069999999937999843222233344367786279999889888999986199-9628991279
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP-NAEAVQLDVS 648 (1053)
Q Consensus 571 ~~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~-~~~~~~~d~~ 648 (1053)
..++|.++|.| ++++|+.++..|++.| .+|.+.+|+.++++++.+.+. +......+..
T Consensus 2 slkGKvalITGas~GIG~aia~~la~~G--------------------~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~ 61 (248)
T d2o23a1 2 SVKGLVAVITGGASGLGLATAERLVGQG--------------------ASAVLLDLPNSGGEAQAKKLGNNCVFAPADVT 61 (248)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTT--------------------CEEEEEECTTSSHHHHHHHHCTTEEEEECCTT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 9899889991888789999999999879--------------------98999968867899999983787533322333
Q ss_pred CHHHHHHHH-------CCCCEEEECCC
Q ss_conf 977899750-------16609994488
Q 001559 649 DHKSLCKCI-------SQVEIVISLLP 668 (1053)
Q Consensus 649 d~~~l~~~i-------~~~DvVI~~~p 668 (1053)
+.....+.. ...|.+++...
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (248)
T d2o23a1 62 SEKDVQTALALAKGKFGRVDVAVNCAG 88 (248)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 210112222333223223553421222
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.64 E-value=0.0044 Score=34.10 Aligned_cols=73 Identities=22% Similarity=0.125 Sum_probs=53.4
Q ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHH-----HHHHHHHCCCCCEEEEECCC
Q ss_conf 9499993-74306999999993799984322223334436778627999988988-----89999861999628991279
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK-----DAEEVIEGIPNAEAVQLDVS 648 (1053)
Q Consensus 575 ~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~-----~a~~l~~~~~~~~~~~~d~~ 648 (1053)
++|||.| +|++|+.+++.|.+.| . +|...+|... +.+.+. ..++++.+.+|++
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g-~-------------------~V~~~~r~~~~~~~~~l~~~~-~~~~~~~~~~Dl~ 59 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKG-Y-------------------RVHGLVARRSSDTRWRLRELG-IEGDIQYEDGDMA 59 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-C-------------------EEEEEECCCSSCCCHHHHHTT-CGGGEEEEECCTT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-C-------------------EEEEEECCCCCCCHHHHHHHC-CCCCCEEEECCCC
T ss_conf 989997888789999999999783-9-------------------899998999765177798733-3689589975056
Q ss_pred CHHHHHHHHCC--CCEEEECCC
Q ss_conf 97789975016--609994488
Q 001559 649 DHKSLCKCISQ--VEIVISLLP 668 (1053)
Q Consensus 649 d~~~l~~~i~~--~DvVI~~~p 668 (1053)
|.+.+.+.+.. .++++++..
T Consensus 60 d~~~~~~~~~~~~~~~~~~~a~ 81 (321)
T d1rpna_ 60 DACSVQRAVIKAQPQEVYNLAA 81 (321)
T ss_dssp CHHHHHHHHHHHCCSEEEECCS
T ss_pred CHHHHHHHHCCCCCCCCCCCCC
T ss_conf 8577543110333222223333
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=96.57 E-value=0.00048 Score=40.40 Aligned_cols=77 Identities=14% Similarity=0.080 Sum_probs=52.0
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCC------CCEEEE
Q ss_conf 87899499993743069999999937999843222233344367786279999889888999986199------962899
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP------NAEAVQ 644 (1053)
Q Consensus 571 ~~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~------~~~~~~ 644 (1053)
..+.+||.|||+|.+|..++..|+..+ + .++.+.|.+.++++..+..+. +.....
T Consensus 4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~-~------------------~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~ 64 (154)
T d1pzga1 4 VQRRKKVAMIGSGMIGGTMGYLCALRE-L------------------ADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSV 64 (154)
T ss_dssp CSCCCEEEEECCSHHHHHHHHHHHHHT-C------------------CEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCE
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCC-C------------------CEEEEEEECCCCCHHHHHHHHHHCCCCCCEEEE
T ss_conf 457884899898888999999998379-8------------------639999741662046999875011125874699
Q ss_pred ECCCCHHHHHHHHCCCCEEEECCCC
Q ss_conf 1279977899750166099944885
Q 001559 645 LDVSDHKSLCKCISQVEIVISLLPA 669 (1053)
Q Consensus 645 ~d~~d~~~l~~~i~~~DvVI~~~p~ 669 (1053)
.. .....+.++++|+||.+.+.
T Consensus 65 ~~---~~~~~~~~~~adiVvitag~ 86 (154)
T d1pzga1 65 RA---EYSYEAALTGADCVIVTAGL 86 (154)
T ss_dssp EE---ECSHHHHHTTCSEEEECCSC
T ss_pred EC---CCCHHHHHCCCCEEEEECCC
T ss_conf 52---67466664478768975154
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=96.55 E-value=0.01 Score=31.79 Aligned_cols=126 Identities=13% Similarity=0.108 Sum_probs=73.9
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCCCEECCCC-CHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 87884999985521289899999629992524799-13432001345799865410787445221110002499987551
Q 001559 202 GICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSR-LPELFGKAKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDK 280 (1053)
Q Consensus 202 ~i~p~~v~i~G~G~vg~gA~~~~~~Lga~~V~~~d-l~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 280 (1053)
.+.-.+++|+|+|..|+..++.+...|+..++..- ..+-.+.. .. -++.+. ..|
T Consensus 21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l-------~~----~~~~~~------------~~~-- 75 (159)
T d1gpja2 21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVEL-------AR----DLGGEA------------VRF-- 75 (159)
T ss_dssp CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHH-------HH----HHTCEE------------CCG--
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH-------HH----HHHCCC------------CCC--
T ss_conf 70169699987988999999999966985799975868899998-------88----641143------------451--
Q ss_pred CCCCCCCCCCCCCHHHHCCCCCCEEEECCCCCCCCCC-CCCHHHHHHHHC--CCCCCEEEEEEEECCCCCEEEECCCCCC
Q ss_conf 0122395676720242105979499972013689996-439998998551--8999439999841389963210146555
Q 001559 281 ADYYAHPEHYNPVFHKKIAPYASVIVNCMYWEQRFPR-LLSTQQLQDLVR--KGCPLVGISDITCDIGGSLEFVNRTTSI 357 (1053)
Q Consensus 281 ~~~~~~p~~y~~~f~~~~~~~~diiIn~~~~~~~~P~-Lit~e~v~~l~k--~~~~gsvIvDis~D~gG~iE~t~~~tt~ 357 (1053)
.. + .+.+..+||||+|.. +|. +|+.++++..++ +..+..+|+|++.. .+++-. ..
T Consensus 76 ----------~~-~-~~~l~~~Divi~ats----s~~~ii~~~~i~~~~~~r~~~~~~~iiDlavP--r~vd~~--v~-- 133 (159)
T d1gpja2 76 ----------DE-L-VDHLARSDVVVSATA----APHPVIHVDDVREALRKRDRRSPILIIDIANP--RDVEEG--VE-- 133 (159)
T ss_dssp ----------GG-H-HHHHHTCSEEEECCS----SSSCCBCHHHHHHHHHHCSSCCCEEEEECCSS--CSBCTT--GG--
T ss_pred ----------HH-H-HHHHCCCCEEEEECC----CCCCCCCHHHHHHHHHHCCCCCCEEEEEECCC--CCCCHH--HH--
T ss_conf ----------45-7-877354899999248----98764127666899872025798589960478--886865--60--
Q ss_pred CCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHH
Q ss_conf 68727727998876788789983999328810588
Q 001559 358 DSSFFRYDPLSDSYHDDLEGNGLVCQAVDTLPTEF 392 (1053)
Q Consensus 358 ~~P~~~~~~~~~~~~~~~~~~gV~i~~vdnLPs~l 392 (1053)
.-+||.+|-+|.|-...
T Consensus 134 ------------------~~~~v~l~~ld~l~~~~ 150 (159)
T d1gpja2 134 ------------------NIEDVEVRTIDDLRVIA 150 (159)
T ss_dssp ------------------GSTTEEEEEHHHHHHHH
T ss_pred ------------------CCCCEEEEEHHHHHHHH
T ss_conf ------------------56982998689999999
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=96.54 E-value=0.0019 Score=36.58 Aligned_cols=70 Identities=26% Similarity=0.284 Sum_probs=39.4
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCH
Q ss_conf 87899499993743069999999937999843222233344367786279999889888999986199962899127997
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
...++++.|+|+|.+|+.+++.|...| .+|...++............ . ..
T Consensus 46 eL~gktvgIiG~G~IG~~va~~l~~fg--------------------~~v~~~d~~~~~~~~~~~~~---~-------~~ 95 (193)
T d1mx3a1 46 RIRGETLGIIGLGRVGQAVALRAKAFG--------------------FNVLFYDPYLSDGVERALGL---Q-------RV 95 (193)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTT--------------------CEEEEECTTSCTTHHHHHTC---E-------EC
T ss_pred EEECCEEEEECCCCCCCCCEEEEECCC--------------------CCEEECCCCCCCCCHHHHCC---C-------CC
T ss_conf 540766888334335531100000023--------------------21021267311110233154---0-------13
Q ss_pred HHHHHHHCCCCEEEECCCCC
Q ss_conf 78997501660999448852
Q 001559 651 KSLCKCISQVEIVISLLPAS 670 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~ 670 (1053)
.++.++++++|+|+.++|..
T Consensus 96 ~~l~~ll~~sD~i~~~~plt 115 (193)
T d1mx3a1 96 STLQDLLFHSDCVTLHCGLN 115 (193)
T ss_dssp SSHHHHHHHCSEEEECCCCC
T ss_pred CCHHHCCCCCCEEEEEECCC
T ss_conf 53655255677899840113
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=96.53 E-value=0.0041 Score=34.33 Aligned_cols=94 Identities=10% Similarity=0.056 Sum_probs=60.8
Q ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEE-EEEECCH-----HHHHHHHHCCC---CCEEE
Q ss_conf 99499993-743069999999937999843222233344367786279-9998898-----88999986199---96289
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRV-LVASLYL-----KDAEEVIEGIP---NAEAV 643 (1053)
Q Consensus 574 ~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v-~v~~r~~-----~~a~~l~~~~~---~~~~~ 643 (1053)
|++|.|+| +|++|+-+++.|..++.+ ++ .+..+.. ++.......+. .....
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~-------------------ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~ 61 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHM-------------------TITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQ 61 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTE-------------------EEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCC-------------------CEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 938999896438999999999828997-------------------4576670011232233322346633343454421
Q ss_pred EECCCCHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEEC
Q ss_conf 912799778997501660999448852117999998870790999513
Q 001559 644 QLDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASY 691 (1053)
Q Consensus 644 ~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~sy 691 (1053)
.. ........++|+++.|+|............+.++.++|.|.
T Consensus 62 ~~-----~~~~~~~~~~dvvf~alp~~~s~~~~~~~~~~~~~vIDlSa 104 (179)
T d2g17a1 62 PM-----SDVRDFSADVDVVFLATAHEVSHDLAPQFLQAGCVVFDLSG 104 (179)
T ss_dssp EE-----SCGGGTCTTCCEEEECSCHHHHHHHHHHHHHTTCEEEECSS
T ss_pred CC-----HHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCEEECCCC
T ss_conf 11-----04554312221221145505578874355405822411542
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=96.51 E-value=0.0099 Score=31.82 Aligned_cols=112 Identities=14% Similarity=0.151 Sum_probs=69.5
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCH
Q ss_conf 87899499993743069999999937999843222233344367786279999889888999986199962899127997
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
+.+.++|+|-|.|.+|+.++++|.+.| ..+.+++.+..+.+.+..... ...+ +.
T Consensus 36 ~l~g~~v~IqG~GnVG~~~a~~L~~~G--------------------akvv~~d~~~~~~~~~~~~~g-~~~~-----~~ 89 (230)
T d1leha1 36 SLEGLAVSVQGLGNVAKALCKKLNTEG--------------------AKLVVTDVNKAAVSAAVAEEG-ADAV-----AP 89 (230)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--------------------CEEEEECSCHHHHHHHHHHHC-CEEC-----CG
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--------------------CEEEEECCCHHHHHHHHHHCC-CCCC-----CC
T ss_conf 978999999898889999999999879--------------------989751433788999998339-7326-----87
Q ss_pred HHHHHHHCCCCEEEECCC-CCCCHHHHHHHHHHCCEEEEEEC-CCHHHHHHHHHHHHCCCEEEEC
Q ss_conf 789975016609994488-52117999998870790999513-6756999999999759869806
Q 001559 651 KSLCKCISQVEIVISLLP-ASCHVMVANACIEFKKHLVTASY-IDDSMSKLDEKAKGAGITILGE 713 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p-~~~~~~v~~a~i~~g~~~vD~sy-~~~~~~~L~~~Ak~~Gv~ii~g 713 (1053)
+++- -..||+++-|.- ...+...+. +-.+.+|--.- +++...+-++..+++|+.++++
T Consensus 90 ~~~~--~~~cDIl~PcA~~~~I~~~~~~---~l~ak~Ive~ANn~~t~~ea~~~L~~rGI~~iPD 149 (230)
T d1leha1 90 NAIY--GVTCDIFAPCALGAVLNDFTIP---QLKAKVIAGSADNQLKDPRHGKYLHELGIVYAPD 149 (230)
T ss_dssp GGTT--TCCCSEEEECSCSCCBSTTHHH---HCCCSEECCSCSCCBSSHHHHHHHHHHTCEECCH
T ss_pred CCCC--CCCCCEECCCCCCCCCCHHHHH---CCCCCEEEECCCCCCCCCHHHHHHHHHCCEEEEE
T ss_conf 4323--5665576405555644767762---5576489836667777801999998608689832
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=96.51 E-value=0.018 Score=30.13 Aligned_cols=109 Identities=15% Similarity=0.098 Sum_probs=73.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHHHH
Q ss_conf 94999937430699999999379998432222333443677862799998898889999861999628991279977899
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 575 ~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
+.++|+|.|.+|+.+++.|... .+.+.+.++++++.+... ++.++.+|.++.+.|.
T Consensus 1 kHivI~G~g~~g~~l~~~L~~~----------------------~i~vi~~d~~~~~~~~~~--~~~~i~Gd~~~~~~L~ 56 (129)
T d2fy8a1 1 RHVVICGWSESTLECLRELRGS----------------------EVFVLAEDENVRKKVLRS--GANFVHGDPTRVSDLE 56 (129)
T ss_dssp CCEEEESCCHHHHHHHHTSCGG----------------------GEEEEESCTTHHHHHHHT--TCEEEESCTTSHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHCCC----------------------CCEEEECCHHHHHHHHHC--CCCCCCCCCCCHHHHH
T ss_conf 9899989888999999997579----------------------988998264888999862--8611256547778897
Q ss_pred -HHHCCCCEEEECCCCCCC-HHHHHHHHH--HCCEEEEEECCCHHHHHHHHHHHHCCCEEE
Q ss_conf -750166099944885211-799999887--079099951367569999999997598698
Q 001559 655 -KCISQVEIVISLLPASCH-VMVANACIE--FKKHLVTASYIDDSMSKLDEKAKGAGITIL 711 (1053)
Q Consensus 655 -~~i~~~DvVI~~~p~~~~-~~v~~a~i~--~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~ii 711 (1053)
..+.+++.+|.+++.... ..+...+-+ ...+++-....+..... .+..|+-.+
T Consensus 57 ~a~i~~A~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~----l~~~G~d~v 113 (129)
T d2fy8a1 57 KANVRGARAVIVNLESDSETIHCILGIRKIDESVRIIAEAERYENIEQ----LRMAGADQV 113 (129)
T ss_dssp HTTCTTCSEEEECCSSHHHHHHHHHHHHHHCSSSCEEEECSSGGGHHH----HHHHHCSEE
T ss_pred HHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH----HHHCCCCEE
T ss_conf 743513869877422102347899999987798539999749999999----997798999
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=96.49 E-value=0.0022 Score=36.06 Aligned_cols=60 Identities=20% Similarity=0.331 Sum_probs=47.5
Q ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHH
Q ss_conf 99499993-74306999999993799984322223334436778627999988988899998619996289912799778
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
.|||||+| +|.+|+.+++.|...| .+|...+|.. +|+.|.+.
T Consensus 1 ~MKIlItGasGfiG~~l~~~L~~~g--------------------~~Vi~~~r~~-----------------~D~~d~~~ 43 (281)
T d1vl0a_ 1 HMKILITGANGQLGREIQKQLKGKN--------------------VEVIPTDVQD-----------------LDITNVLA 43 (281)
T ss_dssp CEEEEEESTTSHHHHHHHHHHTTSS--------------------EEEEEECTTT-----------------CCTTCHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECHH-----------------CCCCCHHH
T ss_conf 9879997999889999999998688--------------------9899920412-----------------56789999
Q ss_pred HHHHHCC--CCEEEECCCCC
Q ss_conf 9975016--60999448852
Q 001559 653 LCKCISQ--VEIVISLLPAS 670 (1053)
Q Consensus 653 l~~~i~~--~DvVI~~~p~~ 670 (1053)
+.+.+++ .|+||++....
T Consensus 44 ~~~~l~~~~~d~vih~a~~~ 63 (281)
T d1vl0a_ 44 VNKFFNEKKPNVVINCAAHT 63 (281)
T ss_dssp HHHHHHHHCCSEEEECCCCC
T ss_pred HHHHHHHCCCCEEEEECCCC
T ss_conf 99999873997997402223
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.48 E-value=0.0036 Score=34.72 Aligned_cols=69 Identities=26% Similarity=0.366 Sum_probs=40.2
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCH
Q ss_conf 87899499993743069999999937999843222233344367786279999889888999986199962899127997
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
....+++.|+|.|.+|+.+++.+..++ .+|...+++..+........ + .
T Consensus 41 ~l~~k~vgiiG~G~IG~~va~~~~~fg--------------------~~v~~~d~~~~~~~~~~~~~---~--------~ 89 (184)
T d1ygya1 41 EIFGKTVGVVGLGRIGQLVAQRIAAFG--------------------AYVVAYDPYVSPARAAQLGI---E--------L 89 (184)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTT--------------------CEEEEECTTSCHHHHHHHTC---E--------E
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCC--------------------CEEEEECCCCCHHHHHHCCC---E--------E
T ss_conf 122014542035311578888764055--------------------23774068888667753484---4--------5
Q ss_pred HHHHHHHCCCCEEEECCCCC
Q ss_conf 78997501660999448852
Q 001559 651 KSLCKCISQVEIVISLLPAS 670 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~ 670 (1053)
.++.++++++|+|+.++|..
T Consensus 90 ~~l~ell~~sDiv~~~~Plt 109 (184)
T d1ygya1 90 LSLDDLLARADFISVHLPKT 109 (184)
T ss_dssp CCHHHHHHHCSEEEECCCCS
T ss_pred CCHHHHHHHCCEEEECCCCC
T ss_conf 25899985599999737998
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=96.45 E-value=0.0058 Score=33.34 Aligned_cols=77 Identities=9% Similarity=0.113 Sum_probs=53.2
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCC------CCEEEEE
Q ss_conf 7899499993743069999999937999843222233344367786279999889888999986199------9628991
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP------NAEAVQL 645 (1053)
Q Consensus 572 ~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~------~~~~~~~ 645 (1053)
.+..||.|||+|.+|..++..|+..+-+ .++.+.|++.++++..+..+. +...+ .
T Consensus 18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~------------------~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~-~ 78 (160)
T d1i0za1 18 VPNNKITVVGVGQVGMACAISILGKSLA------------------DELALVDVLEDKLKGEMMDLQHGSLFLQTPKI-V 78 (160)
T ss_dssp CCSSEEEEECCSHHHHHHHHHHHHTTCC------------------SEEEEECSCHHHHHHHHHHHHHTGGGCCCSEE-E
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCC------------------CEEEEEEECCCHHHHHHHHHHCCCCCCCCCEE-E
T ss_conf 7998089989798999999999855977------------------57999874351557789988635623689859-8
Q ss_pred CCCCHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 27997789975016609994488521
Q 001559 646 DVSDHKSLCKCISQVEIVISLLPASC 671 (1053)
Q Consensus 646 d~~d~~~l~~~i~~~DvVI~~~p~~~ 671 (1053)
...|. +.++++|+||.+.+...
T Consensus 79 ~~~d~----~~~~~adiVVitAg~~~ 100 (160)
T d1i0za1 79 ADKDY----SVTANSKIVVVTAGVRQ 100 (160)
T ss_dssp ECSSG----GGGTTCSEEEECCSCCC
T ss_pred ECCCH----HHCCCCCEEEEECCCCC
T ss_conf 14654----43133557998447765
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=96.43 E-value=0.019 Score=30.00 Aligned_cols=79 Identities=15% Similarity=0.160 Sum_probs=55.4
Q ss_pred CCCCEEEEEC-CC--HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHH---HHHHHHCCCCCEEEEE
Q ss_conf 7899499993-74--3069999999937999843222233344367786279999889888---9999861999628991
Q 001559 572 KGTSSVLIIG-AG--RVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKD---AEEVIEGIPNAEAVQL 645 (1053)
Q Consensus 572 ~~~~~vliiG-aG--~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~---a~~l~~~~~~~~~~~~ 645 (1053)
.++|+++|.| +| ++|+.+++.|++.| .+|.+.+|+.+. +++......+......
T Consensus 3 L~gK~~lITGass~~GIG~aiA~~l~~~G--------------------~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (258)
T d1qsga_ 3 LSGKRILVTGVASKLSIAYGIAQAMHREG--------------------AELAFTYQNDKLKGRVEEFAAQLGSDIVLQC 62 (258)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTT--------------------CEEEEEESSTTTHHHHHHHHHHTTCCCEEEC
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHHHHHHHCCCCCEEEC
T ss_conf 89987999899985118999999999869--------------------9999995888999999999851588402100
Q ss_pred CCCCHHHHHHHHC-------CCCEEEECCCCC
Q ss_conf 2799778997501-------660999448852
Q 001559 646 DVSDHKSLCKCIS-------QVEIVISLLPAS 670 (1053)
Q Consensus 646 d~~d~~~l~~~i~-------~~DvVI~~~p~~ 670 (1053)
|..+......... ..|++|+.....
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~d~~v~~a~~~ 94 (258)
T d1qsga_ 63 DVAEDASIDTMFAELGKVWPKFDGFVHSIGFA 94 (258)
T ss_dssp CTTCHHHHHHHHHHHHTTCSSEEEEEECCCCC
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 23217899999998653035555378841136
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=96.42 E-value=0.0032 Score=35.07 Aligned_cols=99 Identities=15% Similarity=0.170 Sum_probs=67.5
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHCCCCEECCCCCHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 88788499998552128989999962999252479913432001345799865410787445221110002499987551
Q 001559 201 SGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFGKAKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDK 280 (1053)
Q Consensus 201 ~~i~p~~v~i~G~G~vg~gA~~~~~~Lga~~V~~~dl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 280 (1053)
..+.-.+++|+|.|+.|+...+.++.+|.+ |..+|-.. . ..... ..+
T Consensus 39 ~el~gk~vgIiG~G~IG~~va~~l~~fg~~-V~~~d~~~------------------------~--~~~~~----~~~-- 85 (197)
T d1j4aa1 39 REVRDQVVGVVGTGHIGQVFMQIMEGFGAK-VITYDIFR------------------------N--PELEK----KGY-- 85 (197)
T ss_dssp CCGGGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSC------------------------C--HHHHH----TTC--
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHCCC-CCCCCCCC------------------------C--CCCCC----CEE--
T ss_conf 205687677840443315677767640122-22357543------------------------2--23222----215--
Q ss_pred CCCCCCCCCCCCCHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCE
Q ss_conf 01223956767202421059794999720136899964399989985518999439999841389963
Q 001559 281 ADYYAHPEHYNPVFHKKIAPYASVIVNCMYWEQRFPRLLSTQQLQDLVRKGCPLVGISDITCDIGGSL 348 (1053)
Q Consensus 281 ~~~~~~p~~y~~~f~~~~~~~~diiIn~~~~~~~~P~Lit~e~v~~l~k~~~~gsvIvDis~D~gG~i 348 (1053)
+...+ .+.++.+|+|+.+.-..+..-.+|+++.++.| + +++++|-+| .|+-+
T Consensus 86 ---------~~~~l-~~~l~~sDii~~~~plt~~T~~li~~~~l~~m-k---~~a~lIN~s--RG~iv 137 (197)
T d1j4aa1 86 ---------YVDSL-DDLYKQADVISLHVPDVPANVHMINDESIAKM-K---QDVVIVNVS--RGPLV 137 (197)
T ss_dssp ---------BCSCH-HHHHHHCSEEEECSCCCGGGTTCBSHHHHHHS-C---TTEEEEECS--CGGGB
T ss_pred ---------EECCC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH-C---CCCEEEECC--CHHHH
T ss_conf ---------53011-13322354201348742233343458998630-7---742797347--43110
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.42 E-value=0.00074 Score=39.17 Aligned_cols=76 Identities=17% Similarity=0.108 Sum_probs=52.3
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCC------CCEEEEE
Q ss_conf 7899499993743069999999937999843222233344367786279999889888999986199------9628991
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP------NAEAVQL 645 (1053)
Q Consensus 572 ~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~------~~~~~~~ 645 (1053)
...+||.|+|+|.+|..++..|+..+-+ .++.+.|++.++++..+..+. .......
T Consensus 4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~------------------~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~ 65 (148)
T d1ldna1 4 NGGARVVVIGAGFVGASYVFALMNQGIA------------------DEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIW 65 (148)
T ss_dssp TTSCEEEEECCSHHHHHHHHHHHHHTCC------------------SEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCC------------------CEEEEEEECCCCCCCHHCCHHHCCCCCCCCEEEE
T ss_conf 9998399989598899999999856988------------------5699986325432131011742753368986998
Q ss_pred CCCCHHHHHHHHCCCCEEEECCCCC
Q ss_conf 2799778997501660999448852
Q 001559 646 DVSDHKSLCKCISQVEIVISLLPAS 670 (1053)
Q Consensus 646 d~~d~~~l~~~i~~~DvVI~~~p~~ 670 (1053)
..|. +.++++|+||.+.+..
T Consensus 66 -~~d~----~~l~daDvvvitag~~ 85 (148)
T d1ldna1 66 -HGDY----DDCRDADLVVICAGAN 85 (148)
T ss_dssp -ECCG----GGTTTCSEEEECCSCC
T ss_pred -ECCH----HHHCCCEEEEEECCCC
T ss_conf -7987----8842250687761455
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.37 E-value=0.012 Score=31.28 Aligned_cols=76 Identities=12% Similarity=0.091 Sum_probs=51.9
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCC------CCEEEEE
Q ss_conf 7899499993743069999999937999843222233344367786279999889888999986199------9628991
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP------NAEAVQL 645 (1053)
Q Consensus 572 ~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~------~~~~~~~ 645 (1053)
.+..||.|+|+|.+|..++..|+..+.. .++.+.|++.++++..+..+. ....+..
T Consensus 17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~------------------~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~ 78 (159)
T d2ldxa1 17 LSRCKITVVGVGDVGMACAISILLKGLA------------------DELALVDADTDKLRGEALDLQHGSLFLSTPKIVF 78 (159)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHTTTSC------------------SEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCC------------------CEEEEEECCCHHHHCCHHHHHCCCHHCCCCEEEE
T ss_conf 7888399989898999999999955899------------------8799993784165415998857102148871784
Q ss_pred CCCCHHHHHHHHCCCCEEEECCCCC
Q ss_conf 2799778997501660999448852
Q 001559 646 DVSDHKSLCKCISQVEIVISLLPAS 670 (1053)
Q Consensus 646 d~~d~~~l~~~i~~~DvVI~~~p~~ 670 (1053)
..|. +.++++|+||.+.+..
T Consensus 79 -~~d~----~~~~~adivvitag~~ 98 (159)
T d2ldxa1 79 -GKDY----NVSANSKLVIITAGAR 98 (159)
T ss_dssp -ESSG----GGGTTEEEEEECCSCC
T ss_pred -CCCH----HHHCCCCEEEEECCCC
T ss_conf -4306----5425542899960366
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.35 E-value=0.022 Score=29.61 Aligned_cols=91 Identities=12% Similarity=0.102 Sum_probs=56.7
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCH-
Q ss_conf 7899499993743069999999937999843222233344367786279999889888999986199962899127997-
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH- 650 (1053)
Q Consensus 572 ~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~- 650 (1053)
....+|+|+|+|.+|..++..+...+. ..+.+++++.++.+...+ +.-.+++..+..|.
T Consensus 27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~-------------------~~v~~~~~~~~k~~~a~~-~Ga~~~i~~~~~~~~ 86 (174)
T d1f8fa2 27 TPASSFVTWGAGAVGLSALLAAKVCGA-------------------SIIIAVDIVESRLELAKQ-LGATHVINSKTQDPV 86 (174)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHHTC-------------------SEEEEEESCHHHHHHHHH-HTCSEEEETTTSCHH
T ss_pred CCCCEEEEECCCHHHHHHHHCCCCCCC-------------------CEEEEECCHHHHHHHHHH-CCCEEEEECCCCCHH
T ss_conf 999889996788788645420110231-------------------203552468999999997-299079708985799
Q ss_pred HHHHHHHC-CCCEEEECCCCCCCHHHHHHHHHH
Q ss_conf 78997501-660999448852117999998870
Q 001559 651 KSLCKCIS-QVEIVISLLPASCHVMVANACIEF 682 (1053)
Q Consensus 651 ~~l~~~i~-~~DvVI~~~p~~~~~~v~~a~i~~ 682 (1053)
+.+.++.. ++|+||+|++..........+++.
T Consensus 87 ~~i~~~t~gg~D~vid~~G~~~~~~~~~~~~~~ 119 (174)
T d1f8fa2 87 AAIKEITDGGVNFALESTGSPEILKQGVDALGI 119 (174)
T ss_dssp HHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEE
T ss_pred HHHHHHCCCCCCEEEECCCCHHHHHHHHHCCCC
T ss_conf 999997299973999868968999988742368
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.34 E-value=0.023 Score=29.49 Aligned_cols=99 Identities=13% Similarity=0.133 Sum_probs=59.5
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCHH
Q ss_conf 78994999937430699999999379998432222333443677862799998898889999861999628991279977
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 572 ~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
.....|+|+|+|.+|..++..+...+. ..+.+++++.++.+...+ +....++..+-.+.+
T Consensus 31 ~~g~~vli~GaG~vG~~~~~~a~~~g~-------------------~~vv~~~~~~~k~~~~~~-~ga~~~i~~~~~~~~ 90 (172)
T d1h2ba2 31 YPGAYVAIVGVGGLGHIAVQLLKVMTP-------------------ATVIALDVKEEKLKLAER-LGADHVVDARRDPVK 90 (172)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHCC-------------------CEEEEEESSHHHHHHHHH-TTCSEEEETTSCHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCC-------------------CCCCCCCCHHHHHHHHHH-CCCCEEECCCCCHHH
T ss_conf 999899995788499989988776367-------------------520013311677888863-155134238635799
Q ss_pred HHHHHHC--CCCEEEECCCCCCCHHHHHHHHHHCCEEEEEE
Q ss_conf 8997501--66099944885211799999887079099951
Q 001559 652 SLCKCIS--QVEIVISLLPASCHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 652 ~l~~~i~--~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~s 690 (1053)
...+... ++|+||++++..-....+..+++.+-.++-+.
T Consensus 91 ~~~~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G 131 (172)
T d1h2ba2 91 QVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRMGRLIIVG 131 (172)
T ss_dssp HHHHHTTTCCEEEEEESSCCHHHHHHGGGGEEEEEEEEECC
T ss_pred HHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEE
T ss_conf 98886279875299980674067999999970798899995
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.30 E-value=0.0029 Score=35.33 Aligned_cols=65 Identities=22% Similarity=0.269 Sum_probs=50.5
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCH
Q ss_conf 87899499993743069999999937999843222233344367786279999889888999986199962899127997
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
....++|.|+|.|.+|+.+++.+...| .+|.+.++++.. .+ .. -.
T Consensus 39 ~l~gk~vgIiG~G~IG~~va~~l~~~g--------------------~~v~~~d~~~~~-------~~-~~-------~~ 83 (181)
T d1qp8a1 39 LIQGEKVAVLGLGEIGTRVGKILAALG--------------------AQVRGFSRTPKE-------GP-WR-------FT 83 (181)
T ss_dssp CCTTCEEEEESCSTHHHHHHHHHHHTT--------------------CEEEEECSSCCC-------SS-SC-------CB
T ss_pred CCCCCEEEEECCCCCCCCCEEEEECCC--------------------CCCCCCCCCCCC-------CC-EE-------EE
T ss_conf 335734787034346532100132011--------------------222112465543-------42-04-------53
Q ss_pred HHHHHHHCCCCEEEECCCCC
Q ss_conf 78997501660999448852
Q 001559 651 KSLCKCISQVEIVISLLPAS 670 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~ 670 (1053)
.++.++++++|+|+.++|..
T Consensus 84 ~~l~ell~~sDiv~~~~pl~ 103 (181)
T d1qp8a1 84 NSLEEALREARAAVCALPLN 103 (181)
T ss_dssp SCSHHHHTTCSEEEECCCCS
T ss_pred ECHHHHHHCCCHHHCCCCCC
T ss_conf 02023220000211012122
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.29 E-value=0.0051 Score=33.70 Aligned_cols=72 Identities=17% Similarity=0.060 Sum_probs=50.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHC-------CCC-CEEEEEC
Q ss_conf 94999937430699999999379998432222333443677862799998898889999861-------999-6289912
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEG-------IPN-AEAVQLD 646 (1053)
Q Consensus 575 ~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~-------~~~-~~~~~~d 646 (1053)
|||.|||+|.+|..++..|+..+.+ .++.+.|++.++++..+.. ++. .....
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~------------------~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~-- 60 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDV------------------DEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG-- 60 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCC------------------SEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEE--
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCC------------------CEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCC--
T ss_conf 9799989688899999999954857------------------31899851254016789888611445688774335--
Q ss_pred CCCHHHHHHHHCCCCEEEECCCCC
Q ss_conf 799778997501660999448852
Q 001559 647 VSDHKSLCKCISQVEIVISLLPAS 670 (1053)
Q Consensus 647 ~~d~~~l~~~i~~~DvVI~~~p~~ 670 (1053)
..|. +.++++|+||.+.+..
T Consensus 61 ~~d~----~~~~~adiVvitag~~ 80 (142)
T d1ojua1 61 GADY----SLLKGSEIIVVTAGLA 80 (142)
T ss_dssp ESCG----GGGTTCSEEEECCCCC
T ss_pred CCCH----HHHCCCCEEEEECCCC
T ss_conf 8878----8853056788861456
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=96.29 E-value=0.00096 Score=38.44 Aligned_cols=75 Identities=21% Similarity=0.220 Sum_probs=50.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCC----CEEEEECCCCH
Q ss_conf 94999937430699999999379998432222333443677862799998898889999861999----62899127997
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPN----AEAVQLDVSDH 650 (1053)
Q Consensus 575 ~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~----~~~~~~d~~d~ 650 (1053)
+||.|||+|.+|..++..|+..+-+ .++.+.|++.++++..+..+.. ......-..+
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~------------------~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~- 62 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTA------------------NELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGD- 62 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCS------------------SEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--C-
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCC------------------CEEEEEECCCCCCCEEEEEECCCCCCCCCEEEEECC-
T ss_conf 8499989798899999999866998------------------879999566875540344644675567870475186-
Q ss_pred HHHHHHHCCCCEEEECCCCCC
Q ss_conf 789975016609994488521
Q 001559 651 KSLCKCISQVEIVISLLPASC 671 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~ 671 (1053)
.+.++++|+||.+.+...
T Consensus 63 ---~~~~~~adivvitag~~~ 80 (142)
T d1y6ja1 63 ---YSDVKDCDVIVVTAGANR 80 (142)
T ss_dssp ---GGGGTTCSEEEECCCC--
T ss_pred ---HHHHCCCCEEEEECCCCC
T ss_conf ---898479856999604556
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=96.28 E-value=0.00063 Score=39.62 Aligned_cols=71 Identities=21% Similarity=0.176 Sum_probs=50.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCC-------CCCEEEEECC
Q ss_conf 949999374306999999993799984322223334436778627999988988899998619-------9962899127
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI-------PNAEAVQLDV 647 (1053)
Q Consensus 575 ~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~-------~~~~~~~~d~ 647 (1053)
+||.|+|+|.+|..++..|+..+-. .++.+.|++.++++..+..+ +..... .
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~------------------~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~---~ 59 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFA------------------REMVLIDVDKKRAEGDALDLIHGTPFTRRANIY---A 59 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCC------------------SEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEE---E
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCC------------------CEEEEEECCCCCCCCHHCCCCCCCCCCCCCCCC---C
T ss_conf 9799989698899999999857998------------------779999545443410220010246604566212---7
Q ss_pred CCHHHHHHHHCCCCEEEECCCCC
Q ss_conf 99778997501660999448852
Q 001559 648 SDHKSLCKCISQVEIVISLLPAS 670 (1053)
Q Consensus 648 ~d~~~l~~~i~~~DvVI~~~p~~ 670 (1053)
.|. +.++++|+||.+.+..
T Consensus 60 ~~~----~~~~~adivvitag~~ 78 (140)
T d1a5za1 60 GDY----ADLKGSDVVIVAAGVP 78 (140)
T ss_dssp CCG----GGGTTCSEEEECCCCC
T ss_pred CCH----HHHCCCCEEEEECCCC
T ss_conf 708----8745798899842456
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.25 E-value=0.0027 Score=35.55 Aligned_cols=94 Identities=17% Similarity=0.055 Sum_probs=58.2
Q ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEE-EECCHHHHHHHHHCCCCCEEEEECCCCH
Q ss_conf 899499993-74306999999993799984322223334436778627999-9889888999986199962899127997
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLV-ASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 573 ~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v-~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
+.++|.|+| +|++|+-+++.|.++... ..++.. ++++. .-+.+....+..... + .
T Consensus 1 q~mnVaIvGATGyvG~eli~lL~~~~hP-----------------~~~l~~~~s~~~-~Gk~i~~~~~~~~~~--~---~ 57 (144)
T d2hjsa1 1 QPLNVAVVGATGSVGEALVGLLDERDFP-----------------LHRLHLLASAES-AGQRMGFAESSLRVG--D---V 57 (144)
T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHTTCC-----------------CSCEEEEECTTT-TTCEEEETTEEEECE--E---G
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCC-----------------CEEEEEEEECCC-CCCCEEECCCCCHHC--C---C
T ss_conf 9978999897879999999999865999-----------------469999860365-786323045410000--1---0
Q ss_pred HHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEEC
Q ss_conf 78997501660999448852117999998870790999513
Q 001559 651 KSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASY 691 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~sy 691 (1053)
+ .+...++|+++.++|............+.|+.++|.|.
T Consensus 58 ~--~~~~~~~d~vf~a~p~~~s~~~~~~~~~~g~~VID~Ss 96 (144)
T d2hjsa1 58 D--SFDFSSVGLAFFAAAAEVSRAHAERARAAGCSVIDLSG 96 (144)
T ss_dssp G--GCCGGGCSEEEECSCHHHHHHHHHHHHHTTCEEEETTC
T ss_pred H--HHHHCCCEEEEECCCCCHHHHHCCCCCCCCCEEEEECH
T ss_conf 0--45423323788337963122013201247836886431
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=96.23 E-value=0.0031 Score=35.14 Aligned_cols=93 Identities=17% Similarity=0.199 Sum_probs=55.8
Q ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEE-EEECCHHHHHHHHHCCCCC-EEEEECCCCH
Q ss_conf 99499993-7430699999999379998432222333443677862799-9988988899998619996-2899127997
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVL-VASLYLKDAEEVIEGIPNA-EAVQLDVSDH 650 (1053)
Q Consensus 574 ~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~-v~~r~~~~a~~l~~~~~~~-~~~~~d~~d~ 650 (1053)
|+||.|+| +|++|+-+++.|..++.+ ++. +++++. .-+.+.+..+.. .-..+...+.
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~~-------------------ei~~l~s~~~-aG~~i~~~~p~~~~~~~~~~~~~ 60 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPEA-------------------KITYLSSRTY-AGKKLEEIFPSTLENSILSEFDP 60 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTE-------------------EEEEEECSTT-TTSBHHHHCGGGCCCCBCBCCCH
T ss_pred CEEEEEECCCCHHHHHHHHHHHHCCCC-------------------EEEEEECCCC-CCCCCCCCCCHHHCCCCCCCCCH
T ss_conf 919999797758999999999819984-------------------6998633555-78763345731211343222577
Q ss_pred HHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEEC
Q ss_conf 78997501660999448852117999998870790999513
Q 001559 651 KSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASY 691 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~sy 691 (1053)
+ +...++|+|+.++|.+.....+.. ..++.++|+|-
T Consensus 61 ~---~~~~~~dvvf~a~p~~~s~~~~~~--~~~~~VIDlSa 96 (176)
T d1vkna1 61 E---KVSKNCDVLFTALPAGASYDLVRE--LKGVKIIDLGA 96 (176)
T ss_dssp H---HHHHHCSEEEECCSTTHHHHHHTT--CCSCEEEESSS
T ss_pred H---HHCCCCCEEEECCCCHHHHHHHHH--HCCCEEEECCC
T ss_conf 6---722445168871552778998876--34516984486
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.22 E-value=0.02 Score=29.85 Aligned_cols=71 Identities=14% Similarity=0.135 Sum_probs=45.4
Q ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHH
Q ss_conf 99499993-74306999999993799984322223334436778627999988988899998619996289912799778
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
.++|+|+| +|.+|+.+++.|.+.+.. .+|.+..|+.. ...+. ...+..|..+
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~~------------------~~v~~~~r~~~------~~~~~---~~~~~~d~~~ 54 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPTL------------------AKVIAPARKAL------AEHPR---LDNPVGPLAE 54 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTC------------------CEEECCBSSCC------CCCTT---EECCBSCHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCE------------------EEEEEEECCCH------HHCCC---CCCCCCCHHH
T ss_conf 998999889848999999999968895------------------79999717813------32043---2344321012
Q ss_pred HH-HHHCCCCEEEECCCCCC
Q ss_conf 99-75016609994488521
Q 001559 653 LC-KCISQVEIVISLLPASC 671 (1053)
Q Consensus 653 l~-~~i~~~DvVI~~~p~~~ 671 (1053)
+. .+...+|.|++|++...
T Consensus 55 ~~~~~~~~~d~vi~~~g~~~ 74 (212)
T d2a35a1 55 LLPQLDGSIDTAFCCLGTTI 74 (212)
T ss_dssp HGGGCCSCCSEEEECCCCCH
T ss_pred HHHCCCCCHHEEEEEEEEEC
T ss_conf 22203434001454431101
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=96.11 E-value=0.012 Score=31.33 Aligned_cols=72 Identities=17% Similarity=0.098 Sum_probs=49.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCC--------CCCEEEEEC
Q ss_conf 949999374306999999993799984322223334436778627999988988899998619--------996289912
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI--------PNAEAVQLD 646 (1053)
Q Consensus 575 ~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~--------~~~~~~~~d 646 (1053)
+||.|+|+|.+|..++..|+..+-. .++.+.|++.++++.....+ ........
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~------------------~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~- 61 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLA------------------RELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS- 61 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCC------------------SEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE-
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCC------------------CEEEEECCCCCCCHHHHHHHHCCCCHHCCCCEEEEC-
T ss_conf 9799999698999999999847977------------------369984265553115666533355222046648846-
Q ss_pred CCCHHHHHHHHCCCCEEEECCCCC
Q ss_conf 799778997501660999448852
Q 001559 647 VSDHKSLCKCISQVEIVISLLPAS 670 (1053)
Q Consensus 647 ~~d~~~l~~~i~~~DvVI~~~p~~ 670 (1053)
.|. +.++++|+|+.+.+..
T Consensus 62 -~~~----~~~~dadvvvitag~~ 80 (142)
T d1guza1 62 -NDY----ADTANSDIVIITAGLP 80 (142)
T ss_dssp -SCG----GGGTTCSEEEECCSCC
T ss_pred -CCH----HHHCCCEEEEEEEECC
T ss_conf -878----8853770789998637
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=96.11 E-value=0.0051 Score=33.68 Aligned_cols=71 Identities=14% Similarity=0.098 Sum_probs=48.0
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCH
Q ss_conf 87899499993743069999999937999843222233344367786279999889888999986199962899127997
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
..+.+++.|+|.|.+|+.+++.+...+ .++...++............. . ..
T Consensus 44 ~l~g~tvgIiG~G~IG~~va~~l~~fg--------------------~~v~~~d~~~~~~~~~~~~~~----~-----~~ 94 (191)
T d1gdha1 44 KLDNKTLGIYGFGSIGQALAKRAQGFD--------------------MDIDYFDTHRASSSDEASYQA----T-----FH 94 (191)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTT--------------------CEEEEECSSCCCHHHHHHHTC----E-----EC
T ss_pred EECCCCEEEEECCCCHHHHHHHHHHHC--------------------CCCCCCCCCCCCCCHHHCCCC----C-----CC
T ss_conf 323662478601210489999997531--------------------333224664443210000253----0-----15
Q ss_pred HHHHHHHCCCCEEEECCCCC
Q ss_conf 78997501660999448852
Q 001559 651 KSLCKCISQVEIVISLLPAS 670 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~ 670 (1053)
+++.++++++|+|+.++|..
T Consensus 95 ~~l~~ll~~sD~v~l~~plt 114 (191)
T d1gdha1 95 DSLDSLLSVSQFFSLNAPST 114 (191)
T ss_dssp SSHHHHHHHCSEEEECCCCC
T ss_pred CCHHHHHHHCCEEEECCCCC
T ss_conf 78999974087688417999
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.08 E-value=0.015 Score=30.68 Aligned_cols=26 Identities=15% Similarity=0.018 Sum_probs=21.2
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCE
Q ss_conf 49999855212898999996299925
Q 001559 206 LVFIFTGSGNVSLGAQEIFKLLPHTF 231 (1053)
Q Consensus 206 ~~v~i~G~G~vg~gA~~~~~~Lga~~ 231 (1053)
-+++|+|+|.+|+-|+..++.+|++.
T Consensus 29 ~~vlI~GaG~vG~~a~q~ak~~G~~v 54 (168)
T d1piwa2 29 KKVGIVGLGGIGSMGTLISKAMGAET 54 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 99999788876215788765113210
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=96.08 E-value=0.0014 Score=37.43 Aligned_cols=72 Identities=17% Similarity=0.213 Sum_probs=50.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCC-------CCCEEEEECC
Q ss_conf 949999374306999999993799984322223334436778627999988988899998619-------9962899127
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI-------PNAEAVQLDV 647 (1053)
Q Consensus 575 ~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~-------~~~~~~~~d~ 647 (1053)
.||.|||+|.+|..++..|+..+-+ .++.+.|++.++++..+..+ +.......
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~------------------~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~-- 61 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIA------------------REIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS-- 61 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCC------------------SEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEE--
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCC------------------CEEEEEEECCCCCHHHHHHHHHCCCCCCCCEEECC--
T ss_conf 7899989798899999999844878------------------58999973155310477777742233898515447--
Q ss_pred CCHHHHHHHHCCCCEEEECCCCC
Q ss_conf 99778997501660999448852
Q 001559 648 SDHKSLCKCISQVEIVISLLPAS 670 (1053)
Q Consensus 648 ~d~~~l~~~i~~~DvVI~~~p~~ 670 (1053)
.+. +.++++|+||.+.+..
T Consensus 62 ~~~----~~~~daDvVVitaG~~ 80 (143)
T d1llda1 62 DDP----EICRDADMVVITAGPR 80 (143)
T ss_dssp SCG----GGGTTCSEEEECCCCC
T ss_pred CCH----HHHHCCCEEEEECCCC
T ss_conf 898----8951774899963365
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=96.00 E-value=0.0013 Score=37.55 Aligned_cols=73 Identities=19% Similarity=0.201 Sum_probs=50.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCC------CCEEEEECC
Q ss_conf 99499993743069999999937999843222233344367786279999889888999986199------962899127
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP------NAEAVQLDV 647 (1053)
Q Consensus 574 ~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~------~~~~~~~d~ 647 (1053)
.+||.|+|+|.+|..++..|+..+-. .++.+.|++.++++..+..+. ....... .
T Consensus 1 ~kKI~IIGaG~VG~~~a~~l~~~~~~------------------~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~-~ 61 (146)
T d1hyha1 1 ARKIGIIGLGNVGAAVAHGLIAQGVA------------------DDYVFIDANEAKVKADQIDFQDAMANLEAHGNIV-I 61 (146)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCC------------------SEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEE-E
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCC------------------CEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCEE-C
T ss_conf 98699989688899999999965888------------------6699984045402567876531455547862043-1
Q ss_pred CCHHHHHHHHCCCCEEEECCCC
Q ss_conf 9977899750166099944885
Q 001559 648 SDHKSLCKCISQVEIVISLLPA 669 (1053)
Q Consensus 648 ~d~~~l~~~i~~~DvVI~~~p~ 669 (1053)
.|. +.++++|+||.+.+.
T Consensus 62 ~d~----~~l~~adiVVitaG~ 79 (146)
T d1hyha1 62 NDW----AALADADVVISTLGN 79 (146)
T ss_dssp SCG----GGGTTCSEEEECCSC
T ss_pred CCH----HHHCCCCEEEEECCC
T ss_conf 678----885566489983244
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.99 E-value=0.022 Score=29.57 Aligned_cols=78 Identities=15% Similarity=0.130 Sum_probs=45.6
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCH-
Q ss_conf 7899499993743069999999937999843222233344367786279999889888999986199962899127997-
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH- 650 (1053)
Q Consensus 572 ~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~- 650 (1053)
....+|+|+|+|.+|..++..+...| .+|.+++++.++.+... .+.-..++...-.|.
T Consensus 26 ~~g~~VlV~GaG~vG~~~~~~ak~~G--------------------~~Vi~~~~~~~~~~~a~-~~Ga~~~i~~~~~~~~ 84 (166)
T d1llua2 26 RPGQWVAISGIGGLGHVAVQYARAMG--------------------LHVAAIDIDDAKLELAR-KLGASLTVNARQEDPV 84 (166)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT--------------------CEEEEEESCHHHHHHHH-HTTCSEEEETTTSCHH
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHCC--------------------CCCCEECCHHHHHHHHH-CCCCCCCCCCCCHHHH
T ss_conf 99998999415601789999998739--------------------86512201046787640-3586433222212478
Q ss_pred HHHHHHHCCCCEEEECCCCC
Q ss_conf 78997501660999448852
Q 001559 651 KSLCKCISQVEIVISLLPAS 670 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~ 670 (1053)
+.+.+...+.+.+|.++...
T Consensus 85 ~~~~~~~~g~~~~i~~~~~~ 104 (166)
T d1llua2 85 EAIQRDIGGAHGVLVTAVSN 104 (166)
T ss_dssp HHHHHHHSSEEEEEECCSCH
T ss_pred HHHHHHHCCCCCCCCCCCCC
T ss_conf 89898605874212233322
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.96 E-value=0.018 Score=30.05 Aligned_cols=91 Identities=13% Similarity=0.135 Sum_probs=62.4
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCH
Q ss_conf 87899499993743069999999937999843222233344367786279999889888999986199962899127997
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
....|+++|+|.|.+|+.+|..+...| .+|.+++.++-++-+.. ...+++
T Consensus 21 ~l~Gk~v~V~GyG~iG~g~A~~~rg~G--------------------~~V~v~e~dp~~al~A~--~dG~~v-------- 70 (163)
T d1li4a1 21 MIAGKVAVVAGYGDVGKGCAQALRGFG--------------------ARVIITEIDPINALQAA--MEGYEV-------- 70 (163)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--------------------CEEEEECSCHHHHHHHH--HTTCEE--------
T ss_pred EECCCEEEEECCCCCCHHHHHHHHHCC--------------------CEEEEEECCCCHHHHHH--CCCEEE--------
T ss_conf 455888999565520478899877579--------------------83585413653237755--285486--------
Q ss_pred HHHHHHHCCCCEEEECCCCCCC-HHHHHHHHHHCCEEEEEEC
Q ss_conf 7899750166099944885211-7999998870790999513
Q 001559 651 KSLCKCISQVEIVISLLPASCH-VMVANACIEFKKHLVTASY 691 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~-~~v~~a~i~~g~~~vD~sy 691 (1053)
..+.+.+..+|+||.+|+.... ..-.-..++.|+.+..+.-
T Consensus 71 ~~~~~a~~~adivvtaTGn~~vI~~eh~~~MKdgaIL~N~Gh 112 (163)
T d1li4a1 71 TTMDEACQEGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGH 112 (163)
T ss_dssp CCHHHHTTTCSEEEECSSCSCSBCHHHHTTCCTTEEEEECSS
T ss_pred EEHHHHHHHCCEEEECCCCCCCHHHHHHHHCCCCEEEEEECC
T ss_conf 433443422668874378763033999985569819997145
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=95.95 E-value=0.015 Score=30.58 Aligned_cols=72 Identities=10% Similarity=0.127 Sum_probs=49.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCC--------CEEEEE
Q ss_conf 994999937430699999999379998432222333443677862799998898889999861999--------628991
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPN--------AEAVQL 645 (1053)
Q Consensus 574 ~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~--------~~~~~~ 645 (1053)
+.||.|+|+|.+|..++..|...+ . .++.+.|++.++++..+..+.. ..+...
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~~~-l------------------~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~ 63 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQKN-L------------------GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGS 63 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT-C------------------CEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-C------------------CEEEEEECCCCCCEEEECCHHHHCCCCCCCCEEEEC
T ss_conf 872999898988999999998189-8------------------769998503785326210033035325887589855
Q ss_pred CCCCHHHHHHHHCCCCEEEECCCCC
Q ss_conf 2799778997501660999448852
Q 001559 646 DVSDHKSLCKCISQVEIVISLLPAS 670 (1053)
Q Consensus 646 d~~d~~~l~~~i~~~DvVI~~~p~~ 670 (1053)
+ + .+.++++|+||.+.+..
T Consensus 64 ~--~----~~~~~~advvvitag~~ 82 (150)
T d1t2da1 64 N--T----YDDLAGADVVIVTAGFT 82 (150)
T ss_dssp C--C----GGGGTTCSEEEECCSCS
T ss_pred C--C----CCCCCCCCEEEEECCCC
T ss_conf 6--3----00137876798862355
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.94 E-value=0.034 Score=28.35 Aligned_cols=74 Identities=26% Similarity=0.219 Sum_probs=47.8
Q ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCH--HHHHHHHHCC--------CCCEEE
Q ss_conf 94999937-430699999999379998432222333443677862799998898--8899998619--------996289
Q 001559 575 SSVLIIGA-GRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL--KDAEEVIEGI--------PNAEAV 643 (1053)
Q Consensus 575 ~~vliiGa-G~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~--~~a~~l~~~~--------~~~~~~ 643 (1053)
|||.|+|+ |.+|..++..|+..+-. .++.+.|++. .+++..+..+ .+....
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~------------------~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~ 62 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFM------------------KDLVLIGREHSINKLEGLREDIYDALAGTRSDANIY 62 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTC------------------CEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCC------------------CCCCCCCCHHHHHHHHCCCCCCHHCCCCCCCCCCCC
T ss_conf 97999999976999999999827865------------------333023605566766264432100025556577445
Q ss_pred EECCCCHHHHHHHHCCCCEEEECCCCC
Q ss_conf 912799778997501660999448852
Q 001559 644 QLDVSDHKSLCKCISQVEIVISLLPAS 670 (1053)
Q Consensus 644 ~~d~~d~~~l~~~i~~~DvVI~~~p~~ 670 (1053)
.....| .+.++++|+||.+.+..
T Consensus 63 ~~~~~d----~~~l~~aDvVVitAG~~ 85 (145)
T d1hyea1 63 VESDEN----LRIIDESDVVIITSGVP 85 (145)
T ss_dssp EEETTC----GGGGTTCSEEEECCSCC
T ss_pred CCCCCH----HHHHCCCEEEEEECCCC
T ss_conf 687544----77732434899953565
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=95.88 E-value=0.0066 Score=32.98 Aligned_cols=95 Identities=16% Similarity=0.014 Sum_probs=57.3
Q ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHHH
Q ss_conf 9499993-743069999999937999843222233344367786279999889888999986199962899127997789
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 575 ~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
|||.|+| +|++|+-+++.|.++..+. ...+.....+.. +.+....... ........+.
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p----------------~~~i~~~ss~~~-~gk~~~~~~~-~~~~~~~~~~--- 59 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFD----------------LIEPVFFSTSQI-GVPAPNFGKD-AGMLHDAFDI--- 59 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGG----------------GSEEEEEESSCC-SSBCCCSSSC-CCBCEETTCH---
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCC----------------CEEEEEECCCCC-CCCCCCCCCC-CEEEECCCCH---
T ss_conf 979999984599999999999568999----------------468898214445-6623234885-0343214315---
Q ss_pred HHHHCCCCEEEECCCCCCCHHHHHHHHHHCCE--EEEEEC
Q ss_conf 97501660999448852117999998870790--999513
Q 001559 654 CKCISQVEIVISLLPASCHVMVANACIEFKKH--LVTASY 691 (1053)
Q Consensus 654 ~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~--~vD~sy 691 (1053)
+.++++|+|+.|+|......+...+.+.|.. ++|.|-
T Consensus 60 -~~~~~~DvvF~alp~~~s~~~~~~l~~~g~~~~VIDlSs 98 (147)
T d1mb4a1 60 -ESLKQLDAVITCQGGSYTEKVYPALRQAGWKGYWIDAAS 98 (147)
T ss_dssp -HHHTTCSEEEECSCHHHHHHHHHHHHHTTCCSEEEESSS
T ss_pred -HHHCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf -564366579980682678897699997599569995885
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=95.88 E-value=0.035 Score=28.26 Aligned_cols=91 Identities=12% Similarity=0.105 Sum_probs=56.5
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCC--
Q ss_conf 789949999374306999999993799984322223334436778627999988988899998619996289912799--
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSD-- 649 (1053)
Q Consensus 572 ~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d-- 649 (1053)
....+|+|+|+|++|..++..+...| . ..|.+++.+.+|.+ +++.+....++.....|
T Consensus 27 ~~G~~VlV~G~G~iGl~a~~~ak~~G-a------------------~~Vi~~d~~~~r~~-~a~~~Ga~~~i~~~~~~~~ 86 (174)
T d1e3ia2 27 TPGSTCAVFGLGCVGLSAIIGCKIAG-A------------------SRIIAIDINGEKFP-KAKALGATDCLNPRELDKP 86 (174)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT-C------------------SEEEEECSCGGGHH-HHHHTTCSEEECGGGCSSC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHC-C------------------CEEEEECCCHHHHH-HHHHHCCCCCCCCCCCHHH
T ss_conf 99999999777707888999999838-8------------------43665435248879-9998688712477541366
Q ss_pred HHHHHHH--HCCCCEEEECCCCCCCHHHHHHHHHH
Q ss_conf 7789975--01660999448852117999998870
Q 001559 650 HKSLCKC--ISQVEIVISLLPASCHVMVANACIEF 682 (1053)
Q Consensus 650 ~~~l~~~--i~~~DvVI~~~p~~~~~~v~~a~i~~ 682 (1053)
.....+. -.++|+|+.|++.......+-.+++.
T Consensus 87 ~~~~~~~~~~~G~d~vie~~G~~~~~~~a~~~~~~ 121 (174)
T d1e3ia2 87 VQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVL 121 (174)
T ss_dssp HHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCT
T ss_pred HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHC
T ss_conf 66667653058974899935531689999999636
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=95.85 E-value=0.0024 Score=35.79 Aligned_cols=97 Identities=15% Similarity=0.073 Sum_probs=54.9
Q ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEE-EEECCHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 7899499993-7430699999999379998432222333443677862799-9988988899998619996289912799
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVL-VASLYLKDAEEVIEGIPNAEAVQLDVSD 649 (1053)
Q Consensus 572 ~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~-v~~r~~~~a~~l~~~~~~~~~~~~d~~d 649 (1053)
.++.||.|+| +|++|+-+++.|..++.+ ++. ++++.. ..+.+.+..+..... -+...
T Consensus 3 ~~kikVaIlGATGyvG~elirLL~~HP~~-------------------ei~~l~S~~~-aG~~~~~~~~~~~~~-~~~~~ 61 (183)
T d2cvoa1 3 GEEVRIAVLGASGYTGAEIVRLLANHPQF-------------------RIKVMTADRK-AGEQFGSVFPHLITQ-DLPNL 61 (183)
T ss_dssp SSCEEEEEESCSSHHHHHHHHHHTTCSSE-------------------EEEEEECSTT-TTSCHHHHCGGGTTS-CCCCC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCC-------------------EEEEEECCCC-CCCCCCCCCCCCCCC-CCCCC
T ss_conf 98207999896648999999999828994-------------------6998742465-897442356643333-21110
Q ss_pred HHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEE
Q ss_conf 77899750166099944885211799999887079099951
Q 001559 650 HKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~s 690 (1053)
.........++|+|+.++|......++....+.+ ..+|.+
T Consensus 62 ~~~~~~~~~~~Dvvf~alp~~~s~~~~~~l~~~~-~~v~~~ 101 (183)
T d2cvoa1 62 VAVKDADFSNVDAVFCCLPHGTTQEIIKGLPQEL-KIVDLS 101 (183)
T ss_dssp BCGGGCCGGGCSEEEECCSSSHHHHHHHTSCSSC-EEEECS
T ss_pred HHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCC-CCCCCC
T ss_conf 1466655034334665034321899999998517-642221
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.81 E-value=0.005 Score=33.78 Aligned_cols=101 Identities=17% Similarity=0.192 Sum_probs=65.3
Q ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC-----HHHHHHHHHCCCCCEEEEECCC
Q ss_conf 9499993-743069999999937999843222233344367786279999889-----8889999861999628991279
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY-----LKDAEEVIEGIPNAEAVQLDVS 648 (1053)
Q Consensus 575 ~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~-----~~~a~~l~~~~~~~~~~~~d~~ 648 (1053)
|||+|.| +|.+|+.++..|++.|.. + ..-.++...|.. ...... .....+++.+..|..
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~---v-----------~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~d~~ 65 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYP---D-----------VPADEVIVLDSLTYAGNRANLAP-VDADPRLRFVHGDIR 65 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCT---T-----------SCCSEEEEEECCCTTCCGGGGGG-GTTCTTEEEEECCTT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCC---C-----------CCCCEEEEEECCCCCCCHHHHHH-HHCCCCEEEEEECCC
T ss_conf 97999888778999999999977997---6-----------67765999967874434767665-412787699981010
Q ss_pred CHHHHHHHHCCCCEEEECCCCCCC------------------HHHHHHHHHHCC-EEEEEE
Q ss_conf 977899750166099944885211------------------799999887079-099951
Q 001559 649 DHKSLCKCISQVEIVISLLPASCH------------------VMVANACIEFKK-HLVTAS 690 (1053)
Q Consensus 649 d~~~l~~~i~~~DvVI~~~p~~~~------------------~~v~~a~i~~g~-~~vD~s 690 (1053)
+...........|+|+++...... ..+.++|.+.+. .++-+|
T Consensus 66 ~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~I~~S 126 (322)
T d1r6da_ 66 DAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVS 126 (322)
T ss_dssp CHHHHHHHTTTCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 0011110345443478610112231212235777661488899999999973986699963
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.77 E-value=0.018 Score=30.13 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=20.2
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCCCEECCCC
Q ss_conf 87884999985521289899999629992524799
Q 001559 202 GICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSR 236 (1053)
Q Consensus 202 ~i~p~~v~i~G~G~vg~gA~~~~~~Lga~~V~~~d 236 (1053)
++...+|+|-|.|+||..+.+.+..+|++.|...|
T Consensus 33 ~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD 67 (293)
T d1hwxa1 33 GFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGE 67 (293)
T ss_dssp SSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 87898899989889999999999987998999984
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.73 E-value=0.0073 Score=32.68 Aligned_cols=99 Identities=14% Similarity=0.086 Sum_probs=67.9
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCCCEECCCCCHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 87884999985521289899999629992524799134320013457998654107874452211100024999875510
Q 001559 202 GICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFGKAKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKA 281 (1053)
Q Consensus 202 ~i~p~~v~i~G~G~vg~gA~~~~~~Lga~~V~~~dl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 281 (1053)
.+.-.++.|+|.|+.|+.....++.+|.+ |..+|-. .. +.+.... .+
T Consensus 41 ~l~~k~vgiiG~G~IG~~va~~~~~fg~~-v~~~d~~-~~-----------------------~~~~~~~-----~~--- 87 (184)
T d1ygya1 41 EIFGKTVGVVGLGRIGQLVAQRIAAFGAY-VVAYDPY-VS-----------------------PARAAQL-----GI--- 87 (184)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTTCE-EEEECTT-SC-----------------------HHHHHHH-----TC---
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCCE-EEEECCC-CC-----------------------HHHHHHC-----CC---
T ss_conf 12201454203531157888876405523-7740688-88-----------------------6677534-----84---
Q ss_pred CCCCCCCCCCCCHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCE
Q ss_conf 1223956767202421059794999720136899964399989985518999439999841389963
Q 001559 282 DYYAHPEHYNPVFHKKIAPYASVIVNCMYWEQRFPRLLSTQQLQDLVRKGCPLVGISDITCDIGGSL 348 (1053)
Q Consensus 282 ~~~~~p~~y~~~f~~~~~~~~diiIn~~~~~~~~P~Lit~e~v~~l~k~~~~gsvIvDis~D~gG~i 348 (1053)
. ...+ +++++.+|+|+.+.-..+..-.||..+.++.| | ++++++-+| .|+-|
T Consensus 88 -------~-~~~l-~ell~~sDiv~~~~Plt~~T~~lin~~~l~~m-k---~~a~lIN~s--RG~iV 139 (184)
T d1ygya1 88 -------E-LLSL-DDLLARADFISVHLPKTPETAGLIDKEALAKT-K---PGVIIVNAA--RGGLV 139 (184)
T ss_dssp -------E-ECCH-HHHHHHCSEEEECCCCSTTTTTCBCHHHHTTS-C---TTEEEEECS--CTTSB
T ss_pred -------E-ECCH-HHHHHHCCEEEECCCCCCHHHHHHHHHHHHHH-C---CCCEEEEEC--CHHHH
T ss_conf -------4-5258-99985599999737998001011069997511-8---875699834--31324
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=95.70 E-value=0.0096 Score=31.90 Aligned_cols=124 Identities=15% Similarity=0.164 Sum_probs=75.3
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHCCCCEECCCCCHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 88788499998552128989999962999252479913432001345799865410787445221110002499987551
Q 001559 201 SGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFGKAKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDK 280 (1053)
Q Consensus 201 ~~i~p~~v~i~G~G~vg~gA~~~~~~Lga~~V~~~dl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 280 (1053)
..+.-.+++|+|.|+.|+.....++.+|.+ |..+|-... ... ...+.
T Consensus 41 ~~l~~ktvgIiG~G~IG~~va~~l~~fg~~-v~~~d~~~~------------------------------~~~-~~~~~- 87 (199)
T d1dxya1 41 KELGQQTVGVMGTGHIGQVAIKLFKGFGAK-VIAYDPYPM------------------------------KGD-HPDFD- 87 (199)
T ss_dssp CCGGGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSCC------------------------------SSC-CTTCE-
T ss_pred CCCCCEEEEEEECCCCCCCCCCCCCCCCEE-EECCCCCCC------------------------------HHH-HCCHH-
T ss_conf 214530356642144533221111122114-540477420------------------------------001-00015-
Q ss_pred CCCCCCCCCCCCCHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCEEEECCCCCCCCC
Q ss_conf 01223956767202421059794999720136899964399989985518999439999841389963210146555687
Q 001559 281 ADYYAHPEHYNPVFHKKIAPYASVIVNCMYWEQRFPRLLSTQQLQDLVRKGCPLVGISDITCDIGGSLEFVNRTTSIDSS 360 (1053)
Q Consensus 281 ~~~~~~p~~y~~~f~~~~~~~~diiIn~~~~~~~~P~Lit~e~v~~l~k~~~~gsvIvDis~D~gG~iE~t~~~tt~~~P 360 (1053)
+.+ + +++.+.+|+++.+.-..+..-.+|..+.++.| | ++++++-+| .|+-+. +.
T Consensus 88 ---------~~~-l-~~l~~~~D~v~~~~plt~~T~~li~~~~l~~m-k---~~a~lIN~a--RG~vvd---------e~ 141 (199)
T d1dxya1 88 ---------YVS-L-EDLFKQSDVIDLHVPGIEQNTHIINEAAFNLM-K---PGAIVINTA--RPNLID---------TQ 141 (199)
T ss_dssp ---------ECC-H-HHHHHHCSEEEECCCCCGGGTTSBCHHHHHHS-C---TTEEEEECS--CTTSBC---------HH
T ss_pred ---------HHH-H-HHHHHHCCCCEEEECCCCCCCCCCCHHHHHCC-C---CCEEEEECC--CHHHHH---------HH
T ss_conf ---------789-9-99987402001210012232111258876224-7---742899516--476642---------68
Q ss_pred EEEECCCCCCCCCCCCCCCEEEEECCCHHHHH
Q ss_conf 27727998876788789983999328810588
Q 001559 361 FFRYDPLSDSYHDDLEGNGLVCQAVDTLPTEF 392 (1053)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~gV~i~~vdnLPs~l 392 (1053)
-.. + -...+-+.-.+.|-.+.|=
T Consensus 142 aL~-~--------aL~~g~i~ga~lDV~~~EP 164 (199)
T d1dxya1 142 AML-S--------NLKSGKLAGVGIDTYEYET 164 (199)
T ss_dssp HHH-H--------HHHTTSEEEEEESSCTTHH
T ss_pred HHH-H--------HHHCCCCCEEECCCCCCCC
T ss_conf 889-8--------9863971047634667789
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=95.63 E-value=0.011 Score=31.48 Aligned_cols=71 Identities=15% Similarity=0.084 Sum_probs=41.2
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCH
Q ss_conf 87899499993743069999999937999843222233344367786279999889888999986199962899127997
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
....+++.|+|+|.+|+.+++.|...+ .+|...++.......... .. +. ..
T Consensus 41 ~l~~~~vgiiG~G~IG~~va~~l~~fg--------------------~~v~~~d~~~~~~~~~~~-~~-~~-------~~ 91 (188)
T d2naca1 41 DLEAMHVGTVAAGRIGLAVLRRLAPFD--------------------VHLHYTDRHRLPESVEKE-LN-LT-------WH 91 (188)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHGGGT--------------------CEEEEECSSCCCHHHHHH-HT-CE-------EC
T ss_pred ECCCCCEEECCCCCCCHHHHHHHHCCC--------------------CEEEEEEECCCCCCCCCC-CC-CC-------CC
T ss_conf 515654363155244103554212258--------------------568887401222233121-23-20-------35
Q ss_pred HHHHHHHCCCCEEEECCCCC
Q ss_conf 78997501660999448852
Q 001559 651 KSLCKCISQVEIVISLLPAS 670 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~ 670 (1053)
.++.++++++|+|+.++|..
T Consensus 92 ~~l~~~l~~sD~v~~~~plt 111 (188)
T d2naca1 92 ATREDMYPVCDVVTLNCPLH 111 (188)
T ss_dssp SSHHHHGGGCSEEEECSCCC
T ss_pred CCHHHHHHHCCCHHHCCCCC
T ss_conf 88999987445212102344
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.63 E-value=0.024 Score=29.25 Aligned_cols=99 Identities=13% Similarity=0.184 Sum_probs=59.0
Q ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCH
Q ss_conf 7899499993-743069999999937999843222233344367786279999889888999986199962899127997
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 572 ~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
....+|+|+| +|.+|..++..+...+. ..|.+++++.++.+.+.+ +.-...+..+..|.
T Consensus 26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~-------------------~~V~~~~~~~~~~~~~~~-~Ga~~~i~~~~~~~ 85 (170)
T d1jvba2 26 DPTKTLLVVGAGGGLGTMAVQIAKAVSG-------------------ATIIGVDVREEAVEAAKR-AGADYVINASMQDP 85 (170)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTC-------------------CEEEEEESSHHHHHHHHH-HTCSEEEETTTSCH
T ss_pred CCCCEEEEEECCCCCEEEEEECCCCCCC-------------------CCCCCCCCCHHHHHHHHH-CCCCEEECCCCCCH
T ss_conf 9989899996235540234210122222-------------------222222220255799998-29950223577588
Q ss_pred -HHHHHHH--CCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEE
Q ss_conf -7899750--166099944885211799999887079099951
Q 001559 651 -KSLCKCI--SQVEIVISLLPASCHVMVANACIEFKKHLVTAS 690 (1053)
Q Consensus 651 -~~l~~~i--~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~s 690 (1053)
+.+.+.. ..+|+|++|++.......+-.+++.+-.++-+.
T Consensus 86 ~~~~~~~~~~~~~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G 128 (170)
T d1jvba2 86 LAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVG 128 (170)
T ss_dssp HHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECC
T ss_pred HHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHCCCCCEEEEEC
T ss_conf 9999997641431233101222057776664034697999944
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=95.59 E-value=0.048 Score=27.34 Aligned_cols=123 Identities=15% Similarity=0.150 Sum_probs=73.3
Q ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECC-----
Q ss_conf 99499993-743069999999937999843222233344367786279999889888999986199962899127-----
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDV----- 647 (1053)
Q Consensus 574 ~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~----- 647 (1053)
|++|.|+| +|-+|....+.+.++++- | +.....++++.+.+.+.+..+.---+...|.
T Consensus 1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~------------f----~v~~Lsa~~N~~~L~~q~~~f~pk~v~i~d~~~~~~ 64 (151)
T d1q0qa2 1 MKQLTILGSTGSIGCSTLDVVRHNPEH------------F----RVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKL 64 (151)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTT------------E----EEEEEEESSCHHHHHHHHHHHCCSEEEESSHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCC------------C----EEEEEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 976999757969999999999939788------------4----899999559688899999987642123355999999
Q ss_pred ---------------CCHHHHHHHHC--CCCEEEECCCCCCCHHHHHHHHHHCCEEEEEECCCHHH-HHHHHHHHHCCCE
Q ss_conf ---------------99778997501--66099944885211799999887079099951367569-9999999975986
Q 001559 648 ---------------SDHKSLCKCIS--QVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSM-SKLDEKAKGAGIT 709 (1053)
Q Consensus 648 ---------------~d~~~l~~~i~--~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~sy~~~~~-~~L~~~Ak~~Gv~ 709 (1053)
...+.+.++++ ++|+||++.....+..-.-++++.|+.+.-..=.+--. -.+-..+++.|..
T Consensus 65 l~~~l~~~~~~~~~~~g~~~l~~~~~~~~~D~vi~AI~G~aGL~~t~~aik~gk~iaLANKEslV~aG~i~~~~~k~~~~ 144 (151)
T d1q0qa2 65 LKTMLQQQGSRTEVLSGQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTILLANKDMRTPIAHTMAWPNRVNSG 144 (151)
T ss_dssp HHHHHHHTTCCCEEEESHHHHHHHHTCTTCCEEEECCSSGGGHHHHHHHHHTTCEEEECCHCTHHHHHHHHHTTSCCCCS
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCC
T ss_conf 98876541124200048688999862777788998058610788999999517839997608999689999999981991
Q ss_pred EEE
Q ss_conf 980
Q 001559 710 ILG 712 (1053)
Q Consensus 710 ii~ 712 (1053)
+++
T Consensus 145 IiP 147 (151)
T d1q0qa2 145 VKP 147 (151)
T ss_dssp CCC
T ss_pred EEC
T ss_conf 884
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.51 E-value=0.046 Score=27.44 Aligned_cols=94 Identities=18% Similarity=0.137 Sum_probs=48.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCC--CH
Q ss_conf 8994999937430699999999379998432222333443677862799998898889999861999628991279--97
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVS--DH 650 (1053)
Q Consensus 573 ~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~--d~ 650 (1053)
+..+|+|.|+|.+|..++..+...+ .+|.+++++.++.+.+.+ +. +..+ .+.. |.
T Consensus 27 ~g~~vlv~G~G~iG~~a~~~a~~~g--------------------~~v~~~~~~~~r~~~~k~-~G-a~~~-~~~~~~~~ 83 (168)
T d1rjwa2 27 PGEWVAIYGIGGLGHVAVQYAKAMG--------------------LNVVAVDIGDEKLELAKE-LG-ADLV-VNPLKEDA 83 (168)
T ss_dssp TTCEEEEECCSTTHHHHHHHHHHTT--------------------CEEEEECSCHHHHHHHHH-TT-CSEE-ECTTTSCH
T ss_pred CCCEEEEEECCCCHHHHHHHHHCCC--------------------CEEECCCCCHHHHHHHHH-CC-CCEE-CCCCCCHH
T ss_conf 9998999405641156667773279--------------------767135799898534563-18-6300-03231101
Q ss_pred -HHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEE
Q ss_conf -789975016609994488521179999988707909995
Q 001559 651 -KSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTA 689 (1053)
Q Consensus 651 -~~l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~ 689 (1053)
+.+.+.-.+.+.+|.+++.......+..+++.+-.++..
T Consensus 84 ~~~~~~~~~~~~~~v~~~~~~~~~~~a~~~l~~~G~i~~~ 123 (168)
T d1rjwa2 84 AKFMKEKVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVLV 123 (168)
T ss_dssp HHHHHHHHSSEEEEEESSCCHHHHHHHHHHEEEEEEEEEC
T ss_pred HHHCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEC
T ss_conf 3320112478733786247788999999985127735711
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=95.48 E-value=0.024 Score=29.36 Aligned_cols=97 Identities=8% Similarity=0.026 Sum_probs=52.1
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCCCEECCCCCHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 87884999985521289899999629992524799134320013457998654107874452211100024999875510
Q 001559 202 GICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFGKAKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKA 281 (1053)
Q Consensus 202 ~i~p~~v~i~G~G~vg~gA~~~~~~Lga~~V~~~dl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 281 (1053)
.+.-.+++|+|.|+.|+...+.++.+|.+ |..+|...- . ..+..
T Consensus 41 ~l~~~~vgiiG~G~IG~~va~~l~~fg~~-v~~~d~~~~------------------------------~-----~~~~~ 84 (188)
T d1sc6a1 41 EARGKKLGIIGYGHIGTQLGILAESLGMY-VYFYDIENK------------------------------L-----PLGNA 84 (188)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSCC------------------------------C-----CCTTC
T ss_pred CCCCEEEEEEECCCCHHHHHHHCCCCCCE-EEECCCCCC------------------------------C-----HHHHH
T ss_conf 00104788863044303444210244415-763133334------------------------------1-----34320
Q ss_pred CCCCCCCCCCCCHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCE
Q ss_conf 1223956767202421059794999720136899964399989985518999439999841389963
Q 001559 282 DYYAHPEHYNPVFHKKIAPYASVIVNCMYWEQRFPRLLSTQQLQDLVRKGCPLVGISDITCDIGGSL 348 (1053)
Q Consensus 282 ~~~~~p~~y~~~f~~~~~~~~diiIn~~~~~~~~P~Lit~e~v~~l~k~~~~gsvIvDis~D~gG~i 348 (1053)
.. + ..+ +++++.+|||+.+.-..+..-.+|+.+.++.| + +++++|-+| .|+-|
T Consensus 85 ~~------~-~~l-~ell~~sDii~i~~plt~~T~~li~~~~l~~m-k---~~a~lIN~a--RG~lv 137 (188)
T d1sc6a1 85 TQ------V-QHL-SDLLNMSDVVSLHVPENPSTKNMMGAKEISLM-K---PGSLLINAS--RGTVV 137 (188)
T ss_dssp EE------C-SCH-HHHHHHCSEEEECCCSSTTTTTCBCHHHHHHS-C---TTEEEEECS--CSSSB
T ss_pred HH------H-HHH-HHHHHHCCCEEECCCCCCCHHHHCCHHHHHHC-C---CCCEEEECC--CHHHH
T ss_conf 12------5-568-88875333024404577002431069999607-9---997899767--27864
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=95.45 E-value=0.043 Score=27.68 Aligned_cols=76 Identities=21% Similarity=0.261 Sum_probs=49.3
Q ss_pred EEEEE-C-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC-CHHHHHHHHHCC----CC-CEEE----
Q ss_conf 49999-3-74306999999993799984322223334436778627999988-988899998619----99-6289----
Q 001559 576 SVLII-G-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASL-YLKDAEEVIEGI----PN-AEAV---- 643 (1053)
Q Consensus 576 ~vlii-G-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r-~~~~a~~l~~~~----~~-~~~~---- 643 (1053)
-|.|| | ++++|+.+++.|++.| .+|.+.++ +.++++++.+.+ +. ...+
T Consensus 3 pVAlITGas~GIG~aiA~~la~~G--------------------a~V~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~ 62 (284)
T d1e7wa_ 3 PVALVTGAAKRLGRSIAEGLHAEG--------------------YAVCLHYHRSAAEANALSATLNARRPNSAITVQADL 62 (284)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTT--------------------CEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf 889994888889999999999869--------------------989998389888999999999853588569997411
Q ss_pred -------------EECCCCHHHHHHHH-------CCCCEEEECCCCCC
Q ss_conf -------------91279977899750-------16609994488521
Q 001559 644 -------------QLDVSDHKSLCKCI-------SQVEIVISLLPASC 671 (1053)
Q Consensus 644 -------------~~d~~d~~~l~~~i-------~~~DvVI~~~p~~~ 671 (1053)
.+|+++.+.+.+++ ...|++||+.+...
T Consensus 63 ~~~~~~~~~~~~~~~dv~~~~~v~~~~~~~~~~~G~iDiLVnnAG~~~ 110 (284)
T d1e7wa_ 63 SNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFY 110 (284)
T ss_dssp SSSCBCCCC----CCCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 222344521112245678899999999999998299778996477668
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=95.43 E-value=0.054 Score=26.98 Aligned_cols=92 Identities=14% Similarity=0.172 Sum_probs=58.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEE-CCCC-
Q ss_conf 78994999937430699999999379998432222333443677862799998898889999861999628991-2799-
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQL-DVSD- 649 (1053)
Q Consensus 572 ~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~-d~~d- 649 (1053)
++...|+|+|+|++|..++..+...+. ..|.+++++.+|.+...+ +....++.. +..+
T Consensus 27 k~GdtVlV~GaGG~G~~~~~~~~~~g~-------------------~~Vi~~~~~~~k~~~a~~-~Ga~~~i~~~~~~~~ 86 (176)
T d2jhfa2 27 TQGSTCAVFGLGGVGLSVIMGCKAAGA-------------------ARIIGVDINKDKFAKAKE-VGATECVNPQDYKKP 86 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC-------------------SEEEEECSCGGGHHHHHH-TTCSEEECGGGCSSC
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC-------------------CEEEEECCCHHHHHHHHH-HCCEEEEECCCCHHH
T ss_conf 999999998898707899999997498-------------------357764372789999998-298369836884127
Q ss_pred HHHHHHHH--CCCCEEEECCCCCCCHHHHHHHHHHC
Q ss_conf 77899750--16609994488521179999988707
Q 001559 650 HKSLCKCI--SQVEIVISLLPASCHVMVANACIEFK 683 (1053)
Q Consensus 650 ~~~l~~~i--~~~DvVI~~~p~~~~~~v~~a~i~~g 683 (1053)
.....+.. .++|++|.+++.......+..++..+
T Consensus 87 ~~~~~~~~~~~G~D~vid~~G~~~~~~~a~~~~~~~ 122 (176)
T d2jhfa2 87 IQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEA 122 (176)
T ss_dssp HHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTT
T ss_pred HHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 999999970489777986477416799999987628
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=95.36 E-value=0.047 Score=27.39 Aligned_cols=67 Identities=22% Similarity=0.266 Sum_probs=50.0
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCH
Q ss_conf 87899499993743069999999937999843222233344367786279999889888999986199962899127997
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
....++|+|+|.|.+|+.+++.|...+ .+|...++.... ....... .
T Consensus 41 ~l~~~~vgiiG~G~IG~~va~~l~~fg--------------------~~v~~~d~~~~~--------~~~~~~~-----~ 87 (188)
T d1sc6a1 41 EARGKKLGIIGYGHIGTQLGILAESLG--------------------MYVYFYDIENKL--------PLGNATQ-----V 87 (188)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTT--------------------CEEEEECSSCCC--------CCTTCEE-----C
T ss_pred CCCCEEEEEEECCCCHHHHHHHCCCCC--------------------CEEEECCCCCCC--------HHHHHHH-----H
T ss_conf 001047888630443034442102444--------------------157631333341--------3432012-----5
Q ss_pred HHHHHHHCCCCEEEECCCCC
Q ss_conf 78997501660999448852
Q 001559 651 KSLCKCISQVEIVISLLPAS 670 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~ 670 (1053)
+.+.++++.+|+|+.++|..
T Consensus 88 ~~l~ell~~sDii~i~~plt 107 (188)
T d1sc6a1 88 QHLSDLLNMSDVVSLHVPEN 107 (188)
T ss_dssp SCHHHHHHHCSEEEECCCSS
T ss_pred HHHHHHHHHCCCEEECCCCC
T ss_conf 56888875333024404577
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.30 E-value=0.06 Score=26.71 Aligned_cols=97 Identities=9% Similarity=-0.004 Sum_probs=54.7
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCC--C
Q ss_conf 78994999937430699999999379998432222333443677862799998898889999861999628991279--9
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVS--D 649 (1053)
Q Consensus 572 ~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~--d 649 (1053)
....+|+|+|+|++|..++..+...+ . ..|.+++++.++.+. +..+....++...-. +
T Consensus 27 ~~G~tVlI~GaGGvG~~aiq~ak~~G-~------------------~~vi~~~~~~~k~~~-ak~lGa~~~i~~~~~~~~ 86 (176)
T d2fzwa2 27 EPGSVCAVFGLGGVGLAVIMGCKVAG-A------------------SRIIGVDINKDKFAR-AKEFGATECINPQDFSKP 86 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHT-C------------------SEEEEECSCGGGHHH-HHHHTCSEEECGGGCSSC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHHH-C------------------CCEEEECCCHHHHHH-HHHHCCCEEEECCCHHHH
T ss_conf 99999999563567899999999985-0------------------846997360888999-998399579817740668
Q ss_pred HHHHHHHH--CCCCEEEECCCCCCCHHHHHHHHHHCCEEEE
Q ss_conf 77899750--1660999448852117999998870790999
Q 001559 650 HKSLCKCI--SQVEIVISLLPASCHVMVANACIEFKKHLVT 688 (1053)
Q Consensus 650 ~~~l~~~i--~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD 688 (1053)
.....+.. .++|+||++++..........+++.|...+-
T Consensus 87 ~~~~~~~~~~~g~D~vid~~G~~~~~~~~~~~~~~g~~~~~ 127 (176)
T d2fzwa2 87 IQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSV 127 (176)
T ss_dssp HHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEE
T ss_pred HHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 99999997299972765548878999999986107962578
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=95.29 E-value=0.021 Score=29.72 Aligned_cols=101 Identities=11% Similarity=0.019 Sum_probs=68.2
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCCCEECCCCCHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 87884999985521289899999629992524799134320013457998654107874452211100024999875510
Q 001559 202 GICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFGKAKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKA 281 (1053)
Q Consensus 202 ~i~p~~v~i~G~G~vg~gA~~~~~~Lga~~V~~~dl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 281 (1053)
.+.-.+++|+|.|+.|+...+.++.+|.+ |..+|-.... +..... ++.
T Consensus 46 eL~gktvgIiG~G~IG~~va~~l~~fg~~-v~~~d~~~~~-------------------------~~~~~~----~~~-- 93 (193)
T d1mx3a1 46 RIRGETLGIIGLGRVGQAVALRAKAFGFN-VLFYDPYLSD-------------------------GVERAL----GLQ-- 93 (193)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTTCE-EEEECTTSCT-------------------------THHHHH----TCE--
T ss_pred EEECCEEEEECCCCCCCCCEEEEECCCCC-EEECCCCCCC-------------------------CCHHHH----CCC--
T ss_conf 54076688833433553110000002321-0212673111-------------------------102331----540--
Q ss_pred CCCCCCCCCCCCHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCEE
Q ss_conf 12239567672024210597949997201368999643999899855189994399998413899632
Q 001559 282 DYYAHPEHYNPVFHKKIAPYASVIVNCMYWEQRFPRLLSTQQLQDLVRKGCPLVGISDITCDIGGSLE 349 (1053)
Q Consensus 282 ~~~~~p~~y~~~f~~~~~~~~diiIn~~~~~~~~P~Lit~e~v~~l~k~~~~gsvIvDis~D~gG~iE 349 (1053)
+.+.+ +++++.+|+|+.+.-..+..-.||..+.++.| | ++++++-+| .|+-+.
T Consensus 94 --------~~~~l-~~ll~~sD~i~~~~plt~~T~~li~~~~l~~m-k---~~a~lIN~s--RG~ivd 146 (193)
T d1mx3a1 94 --------RVSTL-QDLLFHSDCVTLHCGLNEHNHHLINDFTVKQM-R---QGAFLVNTA--RGGLVD 146 (193)
T ss_dssp --------ECSSH-HHHHHHCSEEEECCCCCTTCTTSBSHHHHTTS-C---TTEEEEECS--CTTSBC
T ss_pred --------CCCCH-HHCCCCCCEEEEEECCCCCCHHHHHHHHHHCC-C---CCCEEEECC--CCEEEC
T ss_conf --------13536-55255677899840113331024668997323-9---997699437--822994
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=95.23 E-value=0.026 Score=29.09 Aligned_cols=88 Identities=15% Similarity=0.282 Sum_probs=59.7
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCEECCCCCHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 88499998552128989999962999252479913432001345799865410787445221110002499987551012
Q 001559 204 CPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFGKAKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKADY 283 (1053)
Q Consensus 204 ~p~~v~i~G~G~vg~gA~~~~~~Lga~~V~~~dl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 283 (1053)
.-.+++|.|-|-||+|..+-++.+|+. |.+.|+..... ++-. -.+|.-
T Consensus 22 aGk~vvV~GYG~vGrG~A~~~rg~Ga~-V~V~E~DPi~a--------------------------lqA~--mdGf~v--- 69 (163)
T d1v8ba1 22 SGKIVVICGYGDVGKGCASSMKGLGAR-VYITEIDPICA--------------------------IQAV--MEGFNV--- 69 (163)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHHTCE-EEEECSCHHHH--------------------------HHHH--TTTCEE---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCE-EEEEECCCHHH--------------------------HHHH--HCCCCC---
T ss_conf 487899953453245689999739899-99983575316--------------------------8898--658815---
Q ss_pred CCCCCCCCCCHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEE
Q ss_conf 239567672024210597949997201368999643999899855189994399998
Q 001559 284 YAHPEHYNPVFHKKIAPYASVIVNCMYWEQRFPRLLSTQQLQDLVRKGCPLVGISDI 340 (1053)
Q Consensus 284 ~~~p~~y~~~f~~~~~~~~diiIn~~~~~~~~P~Lit~e~v~~l~k~~~~gsvIvDi 340 (1053)
... ++.++.+||+|++.-- +..|+.++++.| | .+.+++-+
T Consensus 70 --------~~~-~~a~~~aDi~vTaTGn----~~vI~~~h~~~M-K---dgaIl~N~ 109 (163)
T d1v8ba1 70 --------VTL-DEIVDKGDFFITCTGN----VDVIKLEHLLKM-K---NNAVVGNI 109 (163)
T ss_dssp --------CCH-HHHTTTCSEEEECCSS----SSSBCHHHHTTC-C---TTCEEEEC
T ss_pred --------CCH-HHCCCCCCEEEECCCC----CCCCCHHHHHHH-H---CCEEEEEC
T ss_conf --------764-5712427699975799----763349999973-0---88299801
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=95.14 E-value=0.034 Score=28.29 Aligned_cols=72 Identities=14% Similarity=0.109 Sum_probs=48.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCC--------CCEEEEEC
Q ss_conf 9499993743069999999937999843222233344367786279999889888999986199--------96289912
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP--------NAEAVQLD 646 (1053)
Q Consensus 575 ~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~--------~~~~~~~d 646 (1053)
+||.|+|+|.+|..++..|+..+ . .++.+.|.+.++++..+..+. ...+...
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~-l------------------~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~- 61 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKE-L------------------GDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGT- 61 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHT-C------------------SEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEE-
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-C------------------CEEEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEC-
T ss_conf 86999897989999999998478-3------------------508988502663036998763533326887779815-
Q ss_pred CCCHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 7997789975016609994488521
Q 001559 647 VSDHKSLCKCISQVEIVISLLPASC 671 (1053)
Q Consensus 647 ~~d~~~l~~~i~~~DvVI~~~p~~~ 671 (1053)
.|. +.++++|+||.+++...
T Consensus 62 -~d~----~~~~~advvvitag~~~ 81 (142)
T d1uxja1 62 -NNY----ADTANSDVIVVTSGAPR 81 (142)
T ss_dssp -SCG----GGGTTCSEEEECCSCC-
T ss_pred -CCH----HHHCCCCEEEEEEECCC
T ss_conf -867----88637877999501367
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=95.08 E-value=0.069 Score=26.29 Aligned_cols=101 Identities=17% Similarity=0.230 Sum_probs=62.8
Q ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCC---
Q ss_conf 899499993-7430699999999379998432222333443677862799998898889999861999628991279---
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVS--- 648 (1053)
Q Consensus 573 ~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~--- 648 (1053)
++++|.|+| +|-+|..+.+.+.++++- | ......+.++.+.+.+.+..+.---+...|..
T Consensus 1 ~pK~I~IlGsTGSIG~~tL~Vi~~~~d~------------f----~v~~lsa~~N~~~L~~q~~ef~Pk~v~i~d~~~~~ 64 (150)
T d1r0ka2 1 QPRTVTVLGATGSIGHSTLDLIERNLDR------------Y----QVIALTANRNVKDLADAAKRTNAKRAVIADPSLYN 64 (150)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTGGG------------E----EEEEEEESSCHHHHHHHHHHTTCSEEEESCGGGHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCC------------C----EEEEEEECCCHHHHHHHHHHHCCCCCEECCHHHHH
T ss_conf 9958999887969999999999819777------------1----89999957978998888875344430321187899
Q ss_pred ---------------CHHHHHHH-HCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEE
Q ss_conf ---------------97789975-016609994488521179999988707909995
Q 001559 649 ---------------DHKSLCKC-ISQVEIVISLLPASCHVMVANACIEFKKHLVTA 689 (1053)
Q Consensus 649 ---------------d~~~l~~~-i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~ 689 (1053)
..+.+.++ ..++|+|+++.....+..-..++++.|+.+.-.
T Consensus 65 ~l~~~~~~~~~~v~~g~~~l~~~~~~~~D~vv~Ai~G~~GL~~tl~ai~~gk~iaLA 121 (150)
T d1r0ka2 65 DLKEALAGSSVEAAAGADALVEAAMMGADWTMAAIIGCAGLKATLAAIRKGKTVALA 121 (150)
T ss_dssp HHHHHTTTCSSEEEESHHHHHHHHTSCCSEEEECCCSGGGHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHCCCCCCCCCCCHHEECCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 999985132311125852011000244432343047504788999997469889996
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=95.06 E-value=0.066 Score=26.42 Aligned_cols=26 Identities=8% Similarity=0.155 Sum_probs=18.3
Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCE
Q ss_conf 49999855-212898999996299925
Q 001559 206 LVFIFTGS-GNVSLGAQEIFKLLPHTF 231 (1053)
Q Consensus 206 ~~v~i~G~-G~vg~gA~~~~~~Lga~~ 231 (1053)
-+++|.|+ |.+|+-|++.++.+|++.
T Consensus 29 ~~VlI~ga~G~vG~~aiqlak~~G~~v 55 (171)
T d1iz0a2 29 EKVLVQAAAGALGTAAVQVARAMGLRV 55 (171)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCEE
T ss_pred CEEEEEECCCCCHHHHHHHHCCCCCCC
T ss_conf 989999566432133221111233333
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=95.03 E-value=0.039 Score=27.91 Aligned_cols=76 Identities=16% Similarity=0.106 Sum_probs=37.6
Q ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCC-H
Q ss_conf 899499993-74306999999993799984322223334436778627999988988899998619996289912799-7
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSD-H 650 (1053)
Q Consensus 573 ~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d-~ 650 (1053)
+..+|+|.| +|++|..++......| .+|....++.++.+.+.+ +....++.-+-.+ .
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~G--------------------a~vi~~~~~~~~~~~~~~-~Ga~~vi~~~~~~~~ 87 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLKG--------------------CKVVGAAGSDEKIAYLKQ-IGFDAAFNYKTVNSL 87 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHTT--------------------CEEEEEESSHHHHHHHHH-TTCSEEEETTSCSCH
T ss_pred CCCEEEEEECCCCHHHHHHHHHHCCC--------------------CEEEEECCCHHHHHHHHH-HHHHHHCCCCCCCHH
T ss_conf 99889999678843699999987069--------------------879996787789999975-200111023441178
Q ss_pred HHHHHHH--CCCCEEEECCCC
Q ss_conf 7899750--166099944885
Q 001559 651 KSLCKCI--SQVEIVISLLPA 669 (1053)
Q Consensus 651 ~~l~~~i--~~~DvVI~~~p~ 669 (1053)
+.+.+.. .++|+|+++++.
T Consensus 88 ~~~~~~~~~~Gvd~v~D~vG~ 108 (182)
T d1v3va2 88 EEALKKASPDGYDCYFDNVGG 108 (182)
T ss_dssp HHHHHHHCTTCEEEEEESSCH
T ss_pred HHHHHHHHCCCCCEEEEECCC
T ss_conf 998877623897646872472
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=95.02 E-value=0.072 Score=26.18 Aligned_cols=87 Identities=18% Similarity=0.300 Sum_probs=57.9
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCH
Q ss_conf 87899499993743069999999937999843222233344367786279999889888999986199962899127997
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
....++|.|+|.|.+|+.+++.|...| .+|...++...+. ....+ +.
T Consensus 42 ~l~~ktvgIiG~G~IG~~va~~l~~fg--------------------~~v~~~d~~~~~~-----~~~~~--------~~ 88 (199)
T d1dxya1 42 ELGQQTVGVMGTGHIGQVAIKLFKGFG--------------------AKVIAYDPYPMKG-----DHPDF--------DY 88 (199)
T ss_dssp CGGGSEEEEECCSHHHHHHHHHHHHTT--------------------CEEEEECSSCCSS-----CCTTC--------EE
T ss_pred CCCCEEEEEEECCCCCCCCCCCCCCCC--------------------EEEECCCCCCCHH-----HHCCH--------HH
T ss_conf 145303566421445332211111221--------------------1454047742000-----10001--------57
Q ss_pred HHHHHHHCCCCEEEECCCCCCC--HHHH---HHHHHHCCEEEEEE
Q ss_conf 7899750166099944885211--7999---99887079099951
Q 001559 651 KSLCKCISQVEIVISLLPASCH--VMVA---NACIEFKKHLVTAS 690 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~--~~v~---~a~i~~g~~~vD~s 690 (1053)
.++.++++.+|+|+.++|..-. ..+. -..++.+..++.++
T Consensus 89 ~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~a 133 (199)
T d1dxya1 89 VSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTA 133 (199)
T ss_dssp CCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECS
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHCCCCCEEEEECC
T ss_conf 899999874020012100122321112588762247742899516
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.00 E-value=0.013 Score=31.00 Aligned_cols=94 Identities=12% Similarity=0.056 Sum_probs=58.0
Q ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHH
Q ss_conf 99499993-74306999999993799984322223334436778627999988988899998619996289912799778
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
+.+|.|+| +|++|+-+++.|.+++ +. ...+.....+. .+.+....... .....+..
T Consensus 1 g~kVaIvGATGyvG~eLirlL~~H~-fp----------------~~~l~~~~s~~-s~G~~~~~~~~-~~~~~~~~---- 57 (154)
T d2gz1a1 1 GYTVAVVGATGAVGAQMIKMLEEST-LP----------------IDKIRYLASAR-SAGKSLKFKDQ-DITIEETT---- 57 (154)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCC-SC----------------EEEEEEEECGG-GTTCEEEETTE-EEEEEECC----
T ss_pred CCEEEEECCCCHHHHHHHHHHHCCC-CC----------------CEEEEEECCCC-CCCCCCCCCCC-CCCCCCCC----
T ss_conf 9889998987599999999997199-98----------------15899823555-44655311587-43124320----
Q ss_pred HHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEEC
Q ss_conf 997501660999448852117999998870790999513
Q 001559 653 LCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASY 691 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~sy 691 (1053)
.....++|+++.++|............+.|+.++|.|.
T Consensus 58 -~~~~~~~d~~f~~~~~~~s~~~~~~~~~~~~~VIDlSs 95 (154)
T d2gz1a1 58 -ETAFEGVDIALFSAGSSTSAKYAPYAVKAGVVVVDNTS 95 (154)
T ss_dssp -TTTTTTCSEEEECSCHHHHHHHHHHHHHTTCEEEECSS
T ss_pred -HHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEHHCCH
T ss_conf -45666666654156753025677653244413000573
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=94.94 E-value=0.022 Score=29.51 Aligned_cols=60 Identities=20% Similarity=0.235 Sum_probs=43.2
Q ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHH
Q ss_conf 99499993-74306999999993799984322223334436778627999988988899998619996289912799778
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
++||||.| +|++|+.+++.|++.|. .+.+.+... .+|..|.+.
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~--------------------~vi~~~~~~----------------~~~~~~~~~ 45 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGD--------------------VELVLRTRD----------------ELNLLDSRA 45 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTT--------------------EEEECCCTT----------------TCCTTCHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC--------------------EEEEECCCH----------------HCCCCCHHH
T ss_conf 98899985872899999999997849--------------------899965702----------------425358999
Q ss_pred HHHHHCC--CCEEEECCCC
Q ss_conf 9975016--6099944885
Q 001559 653 LCKCISQ--VEIVISLLPA 669 (1053)
Q Consensus 653 l~~~i~~--~DvVI~~~p~ 669 (1053)
+.+.++. .|.|+++...
T Consensus 46 ~~~~~~~~~~d~v~~~a~~ 64 (315)
T d1e6ua_ 46 VHDFFASERIDQVYLAAAK 64 (315)
T ss_dssp HHHHHHHHCCSEEEECCCC
T ss_pred HHHHHHHCCCCEEEECCHH
T ss_conf 9999864699899985121
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.86 E-value=0.0029 Score=35.27 Aligned_cols=72 Identities=17% Similarity=0.068 Sum_probs=47.5
Q ss_pred EEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHHHH
Q ss_conf 499993-7430699999999379998432222333443677862799998898889999861999628991279977899
Q 001559 576 SVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSLC 654 (1053)
Q Consensus 576 ~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l~ 654 (1053)
.++|-| ++++|+.++..|++.| . +|.+.+|+.++++++..... ....+|+++.++..
T Consensus 2 TAlVTGas~GiG~aiA~~la~~G-a-------------------~V~i~~r~~~~~~~~~~~~~--~~~~~dv~~~~~~~ 59 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAG-H-------------------TVACHDESFKQKDELEAFAE--TYPQLKPMSEQEPA 59 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTT-C-------------------EEEECCGGGGSHHHHHHHHH--HCTTSEECCCCSHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCC-C-------------------EEEEEECCHHHHHHHHHHHC--CEEEECCCCHHHHH
T ss_conf 89998988878999999999879-9-------------------89999798889999986218--18881339999999
Q ss_pred HHH-------CCCCEEEECCCC
Q ss_conf 750-------166099944885
Q 001559 655 KCI-------SQVEIVISLLPA 669 (1053)
Q Consensus 655 ~~i-------~~~DvVI~~~p~ 669 (1053)
+++ ...|++||..+.
T Consensus 60 ~~~~~~~~~~G~iDiLVnNAg~ 81 (252)
T d1zmta1 60 ELIEAVTSAYGQVDVLVSNDIF 81 (252)
T ss_dssp HHHHHHHHHHSCCCEEEEECCC
T ss_pred HHHHHHHHHCCCCCEEEECCCC
T ss_conf 9999999975999999989868
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=94.83 E-value=0.0044 Score=34.11 Aligned_cols=92 Identities=12% Similarity=0.064 Sum_probs=60.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHH
Q ss_conf 89949999374306999999993799984322223334436778627999988988899998619996289912799778
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 573 ~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
+..+|+|+|||.+|+.++.++.....+ .-+.+.|-++++..+. +.++.+.. .+.
T Consensus 2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~------------------~iv~fiDdd~~k~G~~---I~Gi~V~~-----~~~ 55 (126)
T d2dt5a2 2 RKWGLCIVGMGRLGSALADYPGFGESF------------------ELRGFFDVDPEKVGRP---VRGGVIEH-----VDL 55 (126)
T ss_dssp SCEEEEEECCSHHHHHHHHCSCCCSSE------------------EEEEEEESCTTTTTCE---ETTEEEEE-----GGG
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCC------------------EEEEEEECCHHHCCCE---ECCEEEEC-----HHH
T ss_conf 976299996899999999727546995------------------7999990865754979---89999914-----789
Q ss_pred HHHHHC-CCCEEEECCCCCCCHHHHHHHHHHCCE-EEEEE
Q ss_conf 997501-660999448852117999998870790-99951
Q 001559 653 LCKCIS-QVEIVISLLPASCHVMVANACIEFKKH-LVTAS 690 (1053)
Q Consensus 653 l~~~i~-~~DvVI~~~p~~~~~~v~~a~i~~g~~-~vD~s 690 (1053)
+.+.+. ..++++.++|......+.+.|++.|.. +...+
T Consensus 56 l~~~~~~~i~iai~~i~~~~~~~I~d~l~~~gIk~I~~f~ 95 (126)
T d2dt5a2 56 LPQRVPGRIEIALLTVPREAAQKAADLLVAAGIKGILNFA 95 (126)
T ss_dssp HHHHSTTTCCEEEECSCHHHHHHHHHHHHHHTCCEEEECS
T ss_pred HHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 8999851662999908999999999999986999874448
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=94.80 E-value=0.046 Score=27.45 Aligned_cols=79 Identities=13% Similarity=0.144 Sum_probs=49.9
Q ss_pred CCCEEEEECCCHHHHHHH--HHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCC--------CCEE
Q ss_conf 899499993743069999--999937999843222233344367786279999889888999986199--------9628
Q 001559 573 GTSSVLIIGAGRVCRPAA--ELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIP--------NAEA 642 (1053)
Q Consensus 573 ~~~~vliiGaG~vg~~ia--~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~--------~~~~ 642 (1053)
+..+|.|+|+|.++.+.+ ..|...... ...++.+.|.+.++++.....+. ....
T Consensus 2 k~~KI~iIGaGsv~~~~~~~~ll~~~~~l----------------~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~ 65 (167)
T d1u8xx1 2 KSFSIVIAGGGSTFTPGIVLMLLDHLEEF----------------PIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEF 65 (167)
T ss_dssp CCEEEEEECTTSSSHHHHHHHHHHTTTTS----------------CEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHC----------------CCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 98669998887213679999999510316----------------87889998388367799999999887873898634
Q ss_pred EEECCCCHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf 991279977899750166099944885211
Q 001559 643 VQLDVSDHKSLCKCISQVEIVISLLPASCH 672 (1053)
Q Consensus 643 ~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~ 672 (1053)
... .+..+.++++|+||++...+-.
T Consensus 66 ~~~-----~d~~eal~~AD~Vvitag~~~~ 90 (167)
T d1u8xx1 66 AAT-----TDPEEAFTDVDFVMAHIRVGKY 90 (167)
T ss_dssp EEE-----SCHHHHHSSCSEEEECCCTTHH
T ss_pred EEC-----CCHHHCCCCCCEEEECCCCCCC
T ss_conf 761-----7746505899899988876787
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.79 E-value=0.055 Score=26.96 Aligned_cols=108 Identities=19% Similarity=0.208 Sum_probs=72.1
Q ss_pred CCCCEEEEECC----CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECC
Q ss_conf 78994999937----43069999999937999843222233344367786279999889888999986199962899127
Q 001559 572 KGTSSVLIIGA----GRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDV 647 (1053)
Q Consensus 572 ~~~~~vliiGa----G~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~ 647 (1053)
...++|.|+|+ +..|+.+.++|.+.+. -+|..++... +.+.+..+
T Consensus 6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~-------------------g~v~pVnP~~-------~~i~G~~~----- 54 (129)
T d2csua1 6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKK-------------------GKVYPVNIKE-------EEVQGVKA----- 54 (129)
T ss_dssp TSCSEEEEETCCSCTTSHHHHHHHHHTTCCS-------------------SEEEEECSSC-------SEETTEEC-----
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHHCCC-------------------CCEEEECCCC-------CCCCCEEE-----
T ss_conf 7998599983479998708999999997499-------------------7089962676-------23088486-----
Q ss_pred CCHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEE-E-CCC---HH----HHHHHHHHHHCCCEEEE
Q ss_conf 997789975016609994488521179999988707909995-1-367---56----99999999975986980
Q 001559 648 SDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTA-S-YID---DS----MSKLDEKAKGAGITILG 712 (1053)
Q Consensus 648 ~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~-s-y~~---~~----~~~L~~~Ak~~Gv~ii~ 712 (1053)
..++.++-...|+++-++|....+.+.+.|.+.|+..+-+ + .+. ++ ..++.+.|++.|+.++.
T Consensus 55 --y~sl~dlp~~vDlvvi~vp~~~~~~~~~~~~~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~girv~G 126 (129)
T d2csua1 55 --YKSVKDIPDEIDLAIIVVPKRFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIG 126 (129)
T ss_dssp --BSSTTSCSSCCSEEEECSCHHHHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEEC
T ss_pred --ECCHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEC
T ss_conf --653533577886678844867708889999973998898713354644421599999999999985997969
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=94.64 E-value=0.033 Score=28.37 Aligned_cols=42 Identities=21% Similarity=0.233 Sum_probs=35.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHH
Q ss_conf 89949999374306999999993799984322223334436778627999988988899998
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVI 634 (1053)
Q Consensus 573 ~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~ 634 (1053)
..++|.|||+|.+|+.++..++..| .+|.+.|++.+.+++..
T Consensus 3 ~I~~vaViGaG~mG~~iA~~~a~~G--------------------~~V~l~D~~~~~l~~~~ 44 (186)
T d1wdka3 3 DVKQAAVLGAGIMGGGIAYQSASKG--------------------TPILMKDINEHGIEQGL 44 (186)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHTT--------------------CCEEEECSSHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHHHHHHH
T ss_conf 8788999896989999999999689--------------------96999979778876555
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.62 E-value=0.082 Score=25.82 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=10.6
Q ss_pred EEEEEC-CCHHHHHHHHHHHHCCCC
Q ss_conf 999985-521289899999629992
Q 001559 207 VFIFTG-SGNVSLGAQEIFKLLPHT 230 (1053)
Q Consensus 207 ~v~i~G-~G~vg~gA~~~~~~Lga~ 230 (1053)
+++|.| +|.+|+-+++.++.+|++
T Consensus 28 ~VlI~ga~g~vG~~~iqla~~~g~~ 52 (183)
T d1pqwa_ 28 RVLIHSATGGVGMAAVSIAKMIGAR 52 (183)
T ss_dssp EEEETTTTSHHHHHHHHHHHHHTCE
T ss_pred EEEEECCCCCCCCCCCHHHCCCCCC
T ss_conf 9999889888642230120112232
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=94.57 E-value=0.093 Score=25.45 Aligned_cols=77 Identities=18% Similarity=0.129 Sum_probs=51.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCC--C
Q ss_conf 78994999937430699999999379998432222333443677862799998898889999861999628991279--9
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVS--D 649 (1053)
Q Consensus 572 ~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~--d 649 (1053)
....+|+|+|+|.+|..++..+...+ . ..|.+++.+.+|++... .+. +..+ .+.. +
T Consensus 24 ~~G~tVlV~GaG~vGl~a~~~ak~~g-a------------------~~Vi~~d~~~~rl~~a~-~~G-a~~~-~~~~~~~ 81 (195)
T d1kola2 24 GPGSTVYVAGAGPVGLAAAASARLLG-A------------------AVVIVGDLNPARLAHAK-AQG-FEIA-DLSLDTP 81 (195)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT-C------------------SEEEEEESCHHHHHHHH-HTT-CEEE-ETTSSSC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHC-C------------------CCEEEECCCCHHHHHHH-HCC-CCEE-EECCCCC
T ss_conf 99999999895878999999997605-6------------------54145304104667665-246-6279-7079867
Q ss_pred H-HHHHHHHC--CCCEEEECCCCC
Q ss_conf 7-78997501--660999448852
Q 001559 650 H-KSLCKCIS--QVEIVISLLPAS 670 (1053)
Q Consensus 650 ~-~~l~~~i~--~~DvVI~~~p~~ 670 (1053)
. +.+.++.. ++|++|.+++..
T Consensus 82 ~~~~i~~~t~g~g~D~vid~vG~~ 105 (195)
T d1kola2 82 LHEQIAALLGEPEVDCAVDAVGFE 105 (195)
T ss_dssp HHHHHHHHHSSSCEEEEEECCCTT
T ss_pred HHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 999999983899837999876642
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.47 E-value=0.018 Score=30.19 Aligned_cols=114 Identities=12% Similarity=0.213 Sum_probs=66.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCC-------------E
Q ss_conf 949999374306999999993799984322223334436778627999988988899998619996-------------2
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNA-------------E 641 (1053)
Q Consensus 575 ~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~-------------~ 641 (1053)
|||.|+|.|++|-+.|..++ .| + +|...|.+.++.+.+......+ .
T Consensus 1 MkI~ViGlG~vGl~~a~~~a-~g-~-------------------~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~ 59 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS-LQ-N-------------------EVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQL 59 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT-TT-S-------------------EEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCC
T ss_pred CEEEEECCCHHHHHHHHHHH-CC-C-------------------CEEEEECCHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 98999898761899999998-79-9-------------------289998998999997410111101248887432455
Q ss_pred EEEECCCCHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHCCCEEEECCCCCHHHH
Q ss_conf 89912799778997501660999448852117999998870790999513675699999999975986980688982478
Q 001559 642 AVQLDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGEMGLDPGID 721 (1053)
Q Consensus 642 ~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~ii~g~G~dPGi~ 721 (1053)
..... ......+.++|+++-++|..... .....|..+.......+ .....+..++...-.-||..
T Consensus 60 ~~~~~----~~~~~~~~~~~ii~v~vpt~~~~---------~~~~~~~~~v~~~~~~~--~~~~~~~~iii~Stv~pgt~ 124 (196)
T d1dlja2 60 SIKAT----LDSKAAYKEAELVIIATPTNYNS---------RINYFDTQHVETVIKEV--LSVNSHATLIIKSTIPIGFI 124 (196)
T ss_dssp CEEEE----SCHHHHHHHCSEEEECCCCCEET---------TTTEECCHHHHHHHHHH--HHHCSSCEEEECSCCCTTHH
T ss_pred HHHCC----CHHHHHHHCCCCCCCCCCCCCCC---------CCCCCCEEEEEEHHHHH--HHCCCCEEEEEEEECCCEEE
T ss_conf 54102----01566642031234357764566---------67875125875002344--44145306775466486135
Q ss_pred HHH
Q ss_conf 999
Q 001559 722 HMM 724 (1053)
Q Consensus 722 ~ml 724 (1053)
.-+
T Consensus 125 ~~~ 127 (196)
T d1dlja2 125 TEM 127 (196)
T ss_dssp HHH
T ss_pred EEE
T ss_conf 655
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.42 E-value=0.1 Score=25.23 Aligned_cols=79 Identities=16% Similarity=0.178 Sum_probs=52.7
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEE-CCCC-
Q ss_conf 78994999937430699999999379998432222333443677862799998898889999861999628991-2799-
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQL-DVSD- 649 (1053)
Q Consensus 572 ~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~-d~~d- 649 (1053)
+....|+|+|+|++|..++..+...| . .+|.++|++.+|.+.. ..+.-..++.. +..+
T Consensus 28 ~~g~tVlI~G~GgvGl~ai~~ak~~G-~------------------~~Vi~vd~~~~kl~~A-k~~GA~~~in~~~~~~~ 87 (176)
T d1d1ta2 28 KPGSTCVVFGLGGVGLSVIMGCKSAG-A------------------SRIIGIDLNKDKFEKA-MAVGATECISPKDSTKP 87 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT-C------------------SEEEEECSCGGGHHHH-HHHTCSEEECGGGCSSC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHCC-C------------------CEEEEECCCHHHHHHH-HHCCCCEEECCCCCCHH
T ss_conf 99999999887726588999999749-8------------------4589843717899999-85478378776654037
Q ss_pred HHHHHHHH--CCCCEEEECCCCC
Q ss_conf 77899750--1660999448852
Q 001559 650 HKSLCKCI--SQVEIVISLLPAS 670 (1053)
Q Consensus 650 ~~~l~~~i--~~~DvVI~~~p~~ 670 (1053)
.+.+.+.. .++|++|.+++..
T Consensus 88 ~~~~~~~~~g~G~d~vi~~~g~~ 110 (176)
T d1d1ta2 88 ISEVLSEMTGNNVGYTFEVIGHL 110 (176)
T ss_dssp HHHHHHHHHTSCCCEEEECSCCH
T ss_pred HHHHHHHHCCCCCEEEEEECCCH
T ss_conf 88999873254320899907856
|
| >d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Escherichia coli [TaxId: 562]
Probab=94.29 E-value=0.11 Score=25.05 Aligned_cols=97 Identities=16% Similarity=0.008 Sum_probs=61.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCC------CC----C----
Q ss_conf 949999374306999999993799984322223334436778627999988988899998619------99----6----
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI------PN----A---- 640 (1053)
Q Consensus 575 ~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~------~~----~---- 640 (1053)
+||.|=|.|++||.+++.+.++++ .++..++-. ...+.++-.+ .+ +
T Consensus 2 ikigINGFGRIGR~v~R~~~~~~~-------------------i~ivaINd~-~~~~~~ayLl~yDSvhG~~~~~v~~~~ 61 (166)
T d1gado1 2 IKVGINGFGRIGRIVFRAAQKRSD-------------------IEIVAINDL-LDADYMAYMLKYDSTHGRFDGTVEVKD 61 (166)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCSS-------------------EEEEEEECS-SCHHHHHHHHHCCTTTCSCSSCEEEET
T ss_pred EEEEEECCCHHHHHHHHHHHHCCC-------------------EEEEEEECC-CCHHHHHHHHEECCCCCCCCCEEEEEC
T ss_conf 599997872799999999831898-------------------199999579-887877441120477888288599849
Q ss_pred --------EEEEECCCCHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEEC
Q ss_conf --------289912799778997501660999448852117999998870790999513
Q 001559 641 --------EAVQLDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASY 691 (1053)
Q Consensus 641 --------~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~sy 691 (1053)
++......+++++.=--.++|+||.||+.+....-+...++.|+.-|-+|.
T Consensus 62 ~~l~ing~~I~i~~~~~p~~i~W~~~gvDiViEcTG~f~t~~~~~~hl~~gakkViiSa 120 (166)
T d1gado1 62 GHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTG 120 (166)
T ss_dssp TEEEETTEEEEEECCSSGGGGCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESS
T ss_pred CEEEECCEEEEEEECCCHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHCCCCCEEEEEC
T ss_conf 97999999999995899678994524897999715434677889978617973688603
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=94.29 E-value=0.039 Score=27.90 Aligned_cols=101 Identities=4% Similarity=-0.033 Sum_probs=66.6
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCCCEECCCCCHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 87884999985521289899999629992524799134320013457998654107874452211100024999875510
Q 001559 202 GICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFGKAKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDKA 281 (1053)
Q Consensus 202 ~i~p~~v~i~G~G~vg~gA~~~~~~Lga~~V~~~dl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 281 (1053)
.+.-.++.|+|.|+.|+.-.+.++.+|.+ |..+|..... ........ ..
T Consensus 44 ~l~g~tvgIiG~G~IG~~va~~l~~fg~~-v~~~d~~~~~------------------------~~~~~~~~--~~---- 92 (191)
T d1gdha1 44 KLDNKTLGIYGFGSIGQALAKRAQGFDMD-IDYFDTHRAS------------------------SSDEASYQ--AT---- 92 (191)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTTCE-EEEECSSCCC------------------------HHHHHHHT--CE----
T ss_pred EECCCCEEEEECCCCHHHHHHHHHHHCCC-CCCCCCCCCC------------------------CCHHHCCC--CC----
T ss_conf 32366247860121048999999753133-3224664443------------------------21000025--30----
Q ss_pred CCCCCCCCCCCCHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCE
Q ss_conf 1223956767202421059794999720136899964399989985518999439999841389963
Q 001559 282 DYYAHPEHYNPVFHKKIAPYASVIVNCMYWEQRFPRLLSTQQLQDLVRKGCPLVGISDITCDIGGSL 348 (1053)
Q Consensus 282 ~~~~~p~~y~~~f~~~~~~~~diiIn~~~~~~~~P~Lit~e~v~~l~k~~~~gsvIvDis~D~gG~i 348 (1053)
+...+ .+..+.+|+|+.+.-..+..-.||+++.++.| | +++++|-+| .|+-+
T Consensus 93 --------~~~~l-~~ll~~sD~v~l~~plt~~T~~li~~~~l~~m-k---~~a~lIN~s--RG~iv 144 (191)
T d1gdha1 93 --------FHDSL-DSLLSVSQFFSLNAPSTPETRYFFNKATIKSL-P---QGAIVVNTA--RGDLV 144 (191)
T ss_dssp --------ECSSH-HHHHHHCSEEEECCCCCTTTTTCBSHHHHTTS-C---TTEEEEECS--CGGGB
T ss_pred --------CCCCH-HHHHHHCCEEEECCCCCCHHHHEECHHHHHCC-C---CCCEEEECC--CCCCH
T ss_conf --------15789-99974087688417999057535268886284-8---760799657--86301
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=94.28 E-value=0.078 Score=25.95 Aligned_cols=97 Identities=8% Similarity=0.088 Sum_probs=65.2
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHCCCCEECCCCCHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 88788499998552128989999962999252479913432001345799865410787445221110002499987551
Q 001559 201 SGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPELFGKAKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDK 280 (1053)
Q Consensus 201 ~~i~p~~v~i~G~G~vg~gA~~~~~~Lga~~V~~~dl~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 280 (1053)
..+.-.++.|+|.|+.|+.-...++.+|.+ |..+|-.... ....... ++.
T Consensus 40 ~~l~~~~vgiiG~G~IG~~va~~l~~fg~~-v~~~d~~~~~------------------------~~~~~~~----~~~- 89 (188)
T d2naca1 40 YDLEAMHVGTVAAGRIGLAVLRRLAPFDVH-LHYTDRHRLP------------------------ESVEKEL----NLT- 89 (188)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHGGGTCE-EEEECSSCCC------------------------HHHHHHH----TCE-
T ss_pred EECCCCCEEECCCCCCCHHHHHHHHCCCCE-EEEEEECCCC------------------------CCCCCCC----CCC-
T ss_conf 551565436315524410355421225856-8887401222------------------------2331212----320-
Q ss_pred CCCCCCCCCCCCCHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 0122395676720242105979499972013689996439998998551899943999984
Q 001559 281 ADYYAHPEHYNPVFHKKIAPYASVIVNCMYWEQRFPRLLSTQQLQDLVRKGCPLVGISDIT 341 (1053)
Q Consensus 281 ~~~~~~p~~y~~~f~~~~~~~~diiIn~~~~~~~~P~Lit~e~v~~l~k~~~~gsvIvDis 341 (1053)
+...+ .+.++.+|+++.+.-..+..-.+|+.+.++.| | +++++|-+|
T Consensus 90 ---------~~~~l-~~~l~~sD~v~~~~plt~~T~~li~~~~l~~m-k---~ga~lIN~a 136 (188)
T d2naca1 90 ---------WHATR-EDMYPVCDVVTLNCPLHPETEHMINDETLKLF-K---RGAYIVNTA 136 (188)
T ss_dssp ---------ECSSH-HHHGGGCSEEEECSCCCTTTTTCBSHHHHTTS-C---TTEEEEECS
T ss_pred ---------CCCCH-HHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHC-C---CCCEEEECC
T ss_conf ---------35889-99987445212102344553333279999857-9---998899627
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=94.23 E-value=0.09 Score=25.53 Aligned_cols=74 Identities=20% Similarity=0.232 Sum_probs=47.3
Q ss_pred EEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHH-HHHHHHHCC----C-CCEEEEECCCC
Q ss_conf 99993-74306999999993799984322223334436778627999988988-899998619----9-96289912799
Q 001559 577 VLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK-DAEEVIEGI----P-NAEAVQLDVSD 649 (1053)
Q Consensus 577 vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~-~a~~l~~~~----~-~~~~~~~d~~d 649 (1053)
++|.| ++++|+.+++.|++.| .+|.+.+|+.+ .++++++.+ + +......+..+
T Consensus 4 AlVTGas~GIG~aia~~la~~G--------------------~~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (266)
T d1mxha_ 4 AVITGGARRIGHSIAVRLHQQG--------------------FRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSL 63 (266)
T ss_dssp EEETTCSSHHHHHHHHHHHHTT--------------------CEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSS
T ss_pred EEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 9990898789999999999879--------------------98999979816789999999976128845887403201
Q ss_pred ----HHHHHH-------HHCCCCEEEECCCCC
Q ss_conf ----778997-------501660999448852
Q 001559 650 ----HKSLCK-------CISQVEIVISLLPAS 670 (1053)
Q Consensus 650 ----~~~l~~-------~i~~~DvVI~~~p~~ 670 (1053)
.+.+.+ .....|++||..+..
T Consensus 64 ~~~~~~~~~~~~~~~~~~~g~iDilvnnAG~~ 95 (266)
T d1mxha_ 64 SSSLLDCCEDIIDCSFRAFGRCDVLVNNASAY 95 (266)
T ss_dssp STTHHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 03489999999999999829988999778567
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.22 E-value=0.11 Score=24.96 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=11.1
Q ss_pred CCEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 99499993-7430699999999379
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFG 597 (1053)
Q Consensus 574 ~~~vliiG-aG~vg~~ia~~L~~~g 597 (1053)
..+|+|.| +|.+|..++..+...|
T Consensus 29 g~~VlV~Ga~G~vG~~aiq~a~~~G 53 (174)
T d1yb5a2 29 GESVLVHGASGGVGLAACQIARAYG 53 (174)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 9989998446554212321100368
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=94.19 E-value=0.11 Score=24.92 Aligned_cols=89 Identities=11% Similarity=0.066 Sum_probs=56.0
Q ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHH-HHHHHHHCCCCCEEEEECCC
Q ss_conf 8789949999374306-999999993799984322223334436778627999988988-89999861999628991279
Q 001559 571 TKGTSSVLIIGAGRVC-RPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK-DAEEVIEGIPNAEAVQLDVS 648 (1053)
Q Consensus 571 ~~~~~~vliiGaG~vg-~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~-~a~~l~~~~~~~~~~~~d~~ 648 (1053)
..+.+++.++|.|++| +++|.+|.+.| + .|...|+... ..+.+.+ . ++.+...+
T Consensus 5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G-~-------------------~VsGSD~~~~~~~~~L~~-~-Gi~v~~g~-- 60 (96)
T d1p3da1 5 MRRVQQIHFIGIGGAGMSGIAEILLNEG-Y-------------------QISGSDIADGVVTQRLAQ-A-GAKIYIGH-- 60 (96)
T ss_dssp CTTCCEEEEETTTSTTHHHHHHHHHHHT-C-------------------EEEEEESCCSHHHHHHHH-T-TCEEEESC--
T ss_pred CHHCCEEEEEEECHHHHHHHHHHHHHCC-C-------------------EEEEEECCCCHHHHHHHH-C-CCEEEECC--
T ss_conf 2007779999877999999999998489-7-------------------799970887801268997-7-98577787--
Q ss_pred CHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEE
Q ss_conf 977899750166099944885211799999887079099
Q 001559 649 DHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLV 687 (1053)
Q Consensus 649 d~~~l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~v 687 (1053)
+. +.+.+.|+||-........+-..+|.+.|..++
T Consensus 61 ~~----~~i~~~d~vV~S~AI~~~npel~~A~~~gipii 95 (96)
T d1p3da1 61 AE----EHIEGASVVVVSSAIKDDNPELVTSKQKRIPVI 95 (96)
T ss_dssp CG----GGGTTCSEEEECTTSCTTCHHHHHHHHTTCCEE
T ss_pred CC----CCCCCCCEEEECCCCCCCCHHHHHHHHCCCCEE
T ss_conf 43----457899899988872998999999998599888
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=94.06 E-value=0.075 Score=26.09 Aligned_cols=108 Identities=21% Similarity=0.249 Sum_probs=72.2
Q ss_pred CCCEEEEECC----CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 8994999937----430699999999379998432222333443677862799998898889999861999628991279
Q 001559 573 GTSSVLIIGA----GRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVS 648 (1053)
Q Consensus 573 ~~~~vliiGa----G~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~ 648 (1053)
..++|.|+|+ +..|..++++|.+.| + .+.+..-+... ..+.+..+
T Consensus 12 ~pksIAVVGaS~~~~k~g~~v~~~L~~~g-~-------------------~~~~v~~~~~~-----~~i~g~~~------ 60 (136)
T d1iuka_ 12 QAKTIAVLGAHKDPSRPAHYVPRYLREQG-Y-------------------RVLPVNPRFQG-----EELFGEEA------ 60 (136)
T ss_dssp HCCEEEEETCCSSTTSHHHHHHHHHHHTT-C-------------------EEEEECGGGTT-----SEETTEEC------
T ss_pred CCCEEEEEEECCCCCCCHHHHHHHHHCCC-C-------------------CCEEEEECCCC-----CEEECEEC------
T ss_conf 78969999646999973689999996389-9-------------------71488730354-----33400003------
Q ss_pred CHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHCCCEEEEC
Q ss_conf 97789975016609994488521179999988707909995136756999999999759869806
Q 001559 649 DHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGE 713 (1053)
Q Consensus 649 d~~~l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~ii~g 713 (1053)
..++.++-...|+|+-++|+.....+.+.|++.|...+-+.--..+ .++.+.|+++|+.++.+
T Consensus 61 -~~~l~~i~~~iD~v~v~~p~~~v~~~v~~~~~~g~k~i~~q~G~~~-~e~~~~a~~~Gi~vV~~ 123 (136)
T d1iuka_ 61 -VASLLDLKEPVDILDVFRPPSALMDHLPEVLALRPGLVWLQSGIRH-PEFEKALKEAGIPVVAD 123 (136)
T ss_dssp -BSSGGGCCSCCSEEEECSCHHHHTTTHHHHHHHCCSCEEECTTCCC-HHHHHHHHHTTCCEEES
T ss_pred -CCCHHHCCCCCCEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCCC-HHHHHHHHHCCCEEECC
T ss_conf -4644440578735788414788999999998517885998558558-99999999959979938
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.03 E-value=0.047 Score=27.38 Aligned_cols=71 Identities=13% Similarity=0.166 Sum_probs=43.5
Q ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCHH
Q ss_conf 899499993-7430699999999379998432222333443677862799998898889999861999628991279977
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 573 ~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
+.|+|+|.| ++++|+.+++.|++.| .+|.+++++..+. ........++..+.+
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G--------------------~~V~~~~~~~~~~------~~~~~~~~~~~~~~~ 54 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARN--------------------WWVASIDVVENEE------ASASVIVKMTDSFTE 54 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTT--------------------CEEEEEESSCCTT------SSEEEECCCCSCHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCCCCC------CCCCCEEECCCCCHH
T ss_conf 97999998989889999999999879--------------------9999996884400------256636622567589
Q ss_pred HH-------HHHHC--CCCEEEECCCC
Q ss_conf 89-------97501--66099944885
Q 001559 652 SL-------CKCIS--QVEIVISLLPA 669 (1053)
Q Consensus 652 ~l-------~~~i~--~~DvVI~~~p~ 669 (1053)
.. .+... ..|++||+.+.
T Consensus 55 ~~~~~~~~~~~~~~~~~iD~lInnAG~ 81 (236)
T d1dhra_ 55 QADQVTAEVGKLLGDQKVDAILCVAGG 81 (236)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 999999999998578982699998733
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.03 E-value=0.12 Score=24.71 Aligned_cols=108 Identities=17% Similarity=0.172 Sum_probs=74.2
Q ss_pred CCCEEEEECC----CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 8994999937----430699999999379998432222333443677862799998898889999861999628991279
Q 001559 573 GTSSVLIIGA----GRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVS 648 (1053)
Q Consensus 573 ~~~~vliiGa----G~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~ 648 (1053)
+.++|.|+|+ +..|+.++++|.+.| + +|..++... ..+.+..+
T Consensus 18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g-~-------------------~v~pVnP~~-------~~i~G~~~------ 64 (139)
T d2d59a1 18 RYKKIALVGASPKPERDANIVMKYLLEHG-Y-------------------DVYPVNPKY-------EEVLGRKC------ 64 (139)
T ss_dssp HCCEEEEETCCSCTTSHHHHHHHHHHHTT-C-------------------EEEEECTTC-------SEETTEEC------
T ss_pred CCCEEEEEEECCCCCCCHHHHHHHHHHCC-C-------------------EEEEECCCC-------CCCCCCCC------
T ss_conf 68969999105999982599999999789-9-------------------799989734-------31379714------
Q ss_pred CHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHCCCEEEEC-CC
Q ss_conf 97789975016609994488521179999988707909995136756999999999759869806-88
Q 001559 649 DHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGE-MG 715 (1053)
Q Consensus 649 d~~~l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~ii~g-~G 715 (1053)
..++.++-...|+++-++|+.....+.+.|++.|...+-+..-... .+..+.|+++|+.++.. |-
T Consensus 65 -~~sl~dlp~~iD~v~i~vp~~~~~~~~~e~~~~g~k~v~~~~G~~~-ee~~~~a~~~gi~vig~~C~ 130 (139)
T d2d59a1 65 -YPSVLDIPDKIEVVDLFVKPKLTMEYVEQAIKKGAKVVWFQYNTYN-REASKKADEAGLIIVANRCM 130 (139)
T ss_dssp -BSSGGGCSSCCSEEEECSCHHHHHHHHHHHHHHTCSEEEECTTCCC-HHHHHHHHHTTCEEEESCCH
T ss_pred -CCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCEEEEECCCCC-HHHHHHHHHCCCEEECCCCC
T ss_conf -5653135766518999838899788999999709999999426439-99999999979988957847
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.89 E-value=0.071 Score=26.22 Aligned_cols=80 Identities=19% Similarity=0.128 Sum_probs=57.4
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCHH
Q ss_conf 78994999937430699999999379998432222333443677862799998898889999861999628991279977
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 572 ~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
.+.++|.|||.|--|++-+..|...| + .|.|.-|.-.+..+.++.- .+++ -
T Consensus 14 ik~k~IaViGYGsQG~AhAlNLrDSG-~-------------------~V~VGLr~gs~s~~~A~~~-Gf~v--------~ 64 (182)
T d1np3a2 14 IQGKKVAIIGYGSQGHAHACNLKDSG-V-------------------DVTVGLRSGSATVAKAEAH-GLKV--------A 64 (182)
T ss_dssp HHTSCEEEECCSHHHHHHHHHHHHTT-C-------------------CEEEECCTTCHHHHHHHHT-TCEE--------E
T ss_pred HCCCEEEEEEECCHHHHHHHHHHHCC-C-------------------CEEEECCCCCCCHHHHHHH-CCCC--------C
T ss_conf 77997999913717688875516349-9-------------------8899757888437777540-5343--------4
Q ss_pred HHHHHHCCCCEEEECCCCCCCHHHHHHHH
Q ss_conf 89975016609994488521179999988
Q 001559 652 SLCKCISQVEIVISLLPASCHVMVANACI 680 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~~~~~~v~~a~i 680 (1053)
++.+..+.+|+|+.++|-..+..+-+.-+
T Consensus 65 ~~~eA~~~aDiim~L~PD~~q~~vy~~~I 93 (182)
T d1np3a2 65 DVKTAVAAADVVMILTPDEFQGRLYKEEI 93 (182)
T ss_dssp CHHHHHHTCSEEEECSCHHHHHHHHHHHT
T ss_pred CHHHHHHHCCEEEEECCHHHHHHHHHHHH
T ss_conf 68998644682001040677789998766
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.88 E-value=0.066 Score=26.44 Aligned_cols=77 Identities=13% Similarity=0.093 Sum_probs=49.5
Q ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 87899499993-74306999999993799984322223334436778627999988988899998619996289912799
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSD 649 (1053)
Q Consensus 571 ~~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d 649 (1053)
...+++|+|+| +.-+|+|++..|+..+ ..|++++..-
T Consensus 36 ~l~Gk~vvVIGrS~iVGrPLa~lL~~~g--------------------atVt~~~~~t---------------------- 73 (170)
T d1a4ia1 36 PIAGRHAVVVGRSKIVGAPMHDLLLWNN--------------------ATVTTCHSKT---------------------- 73 (170)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTT--------------------CEEEEECTTC----------------------
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHCC--------------------CCEEEEECCC----------------------
T ss_conf 5100258998517766639999987546--------------------8668985046----------------------
Q ss_pred HHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEECC
Q ss_conf 7789975016609994488521179999988707909995136
Q 001559 650 HKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYI 692 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~sy~ 692 (1053)
..+.+.++++|++|++++-.-. +....++.|..++|....
T Consensus 74 -~~l~~~~~~aDivi~a~G~~~~--i~~~~vk~g~iviDvgi~ 113 (170)
T d1a4ia1 74 -AHLDEEVNKGDILVVATGQPEM--VKGEWIKPGAIVIDCGIN 113 (170)
T ss_dssp -SSHHHHHTTCSEEEECCCCTTC--BCGGGSCTTCEEEECCCB
T ss_pred -CCHHHHHHHCCCHHHCCCCCCC--CCCCCCCCCCEEECCCCC
T ss_conf -5278887613531100345553--410104689768326865
|
| >d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Achromobacter xylosoxidans [TaxId: 85698]
Probab=93.88 E-value=0.13 Score=24.53 Aligned_cols=101 Identities=19% Similarity=0.072 Sum_probs=63.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEE--CCHHHHHHHHHC------CCC-C-----
Q ss_conf 94999937430699999999379998432222333443677862799998--898889999861------999-6-----
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVAS--LYLKDAEEVIEG------IPN-A----- 640 (1053)
Q Consensus 575 ~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~--r~~~~a~~l~~~------~~~-~----- 640 (1053)
+||.|=|.|++||.+++.+.+.+.. .+.+|...+ .+.+....+.+. ++. +
T Consensus 2 ikigINGfGRIGR~v~R~~~~~~~~----------------~~~~vvaINd~~~~~~~ayLlkyDS~hG~~~~~v~~~~~ 65 (173)
T d1obfo1 2 IRVAINGYGRIGRNILRAHYEGGKS----------------HDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGS 65 (173)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTSC----------------SSEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETT
T ss_pred EEEEEECCCHHHHHHHHHHHHCCCC----------------CCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCEEEECCC
T ss_conf 6999989758999999999867988----------------976999973787768887764135537976755996011
Q ss_pred -------EEEEECCCCHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEEC
Q ss_conf -------289912799778997501660999448852117999998870790999513
Q 001559 641 -------EAVQLDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASY 691 (1053)
Q Consensus 641 -------~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~sy 691 (1053)
.+......|++++.=.-.++|+||.|++.+....-+...+++|+..|-+|.
T Consensus 66 ~l~i~g~~i~i~~~~~p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~GakkViiSA 123 (173)
T d1obfo1 66 YMVVNGDKIRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISA 123 (173)
T ss_dssp EEEETTEEEEEECCSCGGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEESS
T ss_pred EEEECCEEEEEEECCCHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCEEEEC
T ss_conf 4888998899772589878766544555599805655689999977454775269856
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=93.83 E-value=0.045 Score=27.55 Aligned_cols=74 Identities=15% Similarity=0.192 Sum_probs=45.0
Q ss_pred CEEEEEC-CCHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCC---C-CCEEEEECCC
Q ss_conf 9499993-74306999999993-799984322223334436778627999988988899998619---9-9628991279
Q 001559 575 SSVLIIG-AGRVCRPAAELLAS-FGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI---P-NAEAVQLDVS 648 (1053)
Q Consensus 575 ~~vliiG-aG~vg~~ia~~L~~-~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~---~-~~~~~~~d~~ 648 (1053)
|||.|+| +|.+|+.++..|+. .+.. .++.+.|... .++..+..+ . .........+
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~------------------~el~L~D~~~-~~~g~a~Dl~h~~~~~~~~~~~~~ 61 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSG------------------SELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGE 61 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTT------------------CEEEEECSST-THHHHHHHHHTSCSSCEEEEECSS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCC------------------CEEEEECCCC-CCHHHHHHHHCCCCCCCCCEEECC
T ss_conf 979999599849999999999578977------------------5788751555-026599998778220478689768
Q ss_pred CHHHHHHHHCCCCEEEECCCCC
Q ss_conf 9778997501660999448852
Q 001559 649 DHKSLCKCISQVEIVISLLPAS 670 (1053)
Q Consensus 649 d~~~l~~~i~~~DvVI~~~p~~ 670 (1053)
.. .+.++++|+||.+.+..
T Consensus 62 --~~-~~~~~~aDvvvitaG~~ 80 (145)
T d2cmda1 62 --DA-TPALEGADVVLISAGVR 80 (145)
T ss_dssp --CC-HHHHTTCSEEEECCSCC
T ss_pred --CC-CCCCCCCCEEEECCCCC
T ss_conf --97-54567788999888866
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.80 E-value=0.0098 Score=31.84 Aligned_cols=29 Identities=14% Similarity=-0.086 Sum_probs=15.7
Q ss_pred CEEEEEECCC-HHHHHHHHHHHHCCCCEECC
Q ss_conf 8499998552-12898999996299925247
Q 001559 205 PLVFIFTGSG-NVSLGAQEIFKLLPHTFVEP 234 (1053)
Q Consensus 205 p~~v~i~G~G-~vg~gA~~~~~~Lga~~V~~ 234 (1053)
=..++|+|.+ .||+-...++.+.||. |+.
T Consensus 29 GK~vvVIGrS~iVG~Pla~lL~~~gaT-Vt~ 58 (171)
T d1edza1 29 GKKCIVINRSEIVGRPLAALLANDGAT-VYS 58 (171)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHTTSCE-EEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCE-EEE
T ss_conf 988999888511179999999878997-999
|
| >d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Human(Homo sapiens), liver isoform [TaxId: 9606]
Probab=93.74 E-value=0.14 Score=24.37 Aligned_cols=99 Identities=14% Similarity=0.022 Sum_probs=62.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC---CHHHHHHHHHCC------CC-C---
Q ss_conf 9949999374306999999993799984322223334436778627999988---988899998619------99-6---
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASL---YLKDAEEVIEGI------PN-A--- 640 (1053)
Q Consensus 574 ~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r---~~~~a~~l~~~~------~~-~--- 640 (1053)
+.||.|=|.|++||.+.+.+...+. .++..++- +++....+.+.- +. +
T Consensus 1 kikIgINGFGRIGR~v~R~~~~~~~-------------------~~ivaINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~ 61 (169)
T d1u8fo1 1 KVKVGVNGFGRIGRLVTRAAFNSGK-------------------VDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAE 61 (169)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCS-------------------SEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-------------------CEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEE
T ss_conf 9699997985789999999977899-------------------579996687746899999986433468868759997
Q ss_pred ---------EEEEECCCCHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEEC
Q ss_conf ---------289912799778997501660999448852117999998870790999513
Q 001559 641 ---------EAVQLDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASY 691 (1053)
Q Consensus 641 ---------~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~sy 691 (1053)
.+......+++++.=.-.++|+||.||+.+.....+..-++.|+..|-+|.
T Consensus 62 ~~~l~i~~~~I~~~~~~~p~~i~W~~~~vDiViEcTG~f~~~~~~~~hl~~gakkViiSa 121 (169)
T d1u8fo1 62 NGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISA 121 (169)
T ss_dssp TTEEEETTEEEEEECCSSGGGCCTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESS
T ss_pred CCEEEECCEEEEEEECCCHHHCCCCCCCCCEEEEECCEECCHHHHHHHHHCCCCEEEECC
T ss_conf 998999999999997799556981011997999826502458988888765985476314
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=93.60 E-value=0.14 Score=24.22 Aligned_cols=77 Identities=14% Similarity=0.123 Sum_probs=49.1
Q ss_pred CCEEEEECCCHHHHHH--HHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHC-------CC-CCEEE
Q ss_conf 9949999374306999--99999379998432222333443677862799998898889999861-------99-96289
Q 001559 574 TSSVLIIGAGRVCRPA--AELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEG-------IP-NAEAV 643 (1053)
Q Consensus 574 ~~~vliiGaG~vg~~i--a~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~-------~~-~~~~~ 643 (1053)
.+||.|||+|.+|... ...|+..... ...++.+.|.++++++..... ++ ..++.
T Consensus 2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l----------------~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~ 65 (171)
T d1obba1 2 SVKIGIIGAGSAVFSLRLVSDLCKTPGL----------------SGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFE 65 (171)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGG----------------TTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHCCCC----------------CCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9679998978788689999999854536----------------898899996893078999999999888629970899
Q ss_pred EECCCCHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 9127997789975016609994488521
Q 001559 644 QLDVSDHKSLCKCISQVEIVISLLPASC 671 (1053)
Q Consensus 644 ~~d~~d~~~l~~~i~~~DvVI~~~p~~~ 671 (1053)
. ..++.+.++++|+|+++...+-
T Consensus 66 ~-----~td~~eaL~dad~Vv~~~~~g~ 88 (171)
T d1obba1 66 K-----TMNLDDVIIDADFVINTAMVGG 88 (171)
T ss_dssp E-----ESCHHHHHTTCSEEEECCCTTH
T ss_pred E-----ECCHHHCCCCCCEEEEECCCCC
T ss_conf 7-----0780220467876764035566
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=93.54 E-value=0.15 Score=24.15 Aligned_cols=76 Identities=14% Similarity=0.185 Sum_probs=45.0
Q ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCH
Q ss_conf 7899499993-743069999999937999843222233344367786279999889888999986199962899127997
Q 001559 572 KGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 572 ~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
....+|+|.| +|++|..++..+...| .+|.+.+++.++.+.+.+ ++--.+ +|.++.
T Consensus 27 ~~g~~Vlv~ga~g~vG~~~iqlak~~G--------------------a~Vi~~~~s~~k~~~~~~-lGa~~v--i~~~~~ 83 (179)
T d1qora2 27 KPDEQFLFHAAAGGVGLIACQWAKALG--------------------AKLIGTVGTAQKAQSALK-AGAWQV--INYREE 83 (179)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHHT--------------------CEEEEEESSHHHHHHHHH-HTCSEE--EETTTS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHC--------------------CEEEECCCCHHHHHHHHH-CCCEEE--EECCCC
T ss_conf 999989998055432068999998829--------------------847531320378888870-397299--989998
Q ss_pred ---HHHHHHHC--CCCEEEECCCCC
Q ss_conf ---78997501--660999448852
Q 001559 651 ---KSLCKCIS--QVEIVISLLPAS 670 (1053)
Q Consensus 651 ---~~l~~~i~--~~DvVI~~~p~~ 670 (1053)
+.+.++-. .+|+|+++++..
T Consensus 84 d~~~~v~~~t~g~g~d~v~d~~g~~ 108 (179)
T d1qora2 84 DLVERLKEITGGKKVRVVYDSVGRD 108 (179)
T ss_dssp CHHHHHHHHTTTCCEEEEEECSCGG
T ss_pred CHHHHHHHHHCCCCEEEEEECCCHH
T ss_conf 8999999985899709999676478
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=93.53 E-value=0.013 Score=31.12 Aligned_cols=77 Identities=13% Similarity=0.169 Sum_probs=48.3
Q ss_pred CEEEEECCCHHHHHHHHH-HHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCC-----CCCEEEEECCC
Q ss_conf 949999374306999999-993799984322223334436778627999988988899998619-----99628991279
Q 001559 575 SSVLIIGAGRVCRPAAEL-LASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI-----PNAEAVQLDVS 648 (1053)
Q Consensus 575 ~~vliiGaG~vg~~ia~~-L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~-----~~~~~~~~d~~ 648 (1053)
+||.|+|+|.+|.+.+.. |+....- ....++.+.|.+.++++...+.. ...... . +
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~---------------~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~-~--t 62 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISED---------------VRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVL-I--S 62 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTT---------------SCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEE-E--C
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCC---------------CCCCEEEEEECCCHHHHHHHHHHHHHHCCCCEEE-E--E
T ss_conf 98999997888889999999840101---------------6866899992670778889999976424671699-9--5
Q ss_pred CHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 97789975016609994488521
Q 001559 649 DHKSLCKCISQVEIVISLLPASC 671 (1053)
Q Consensus 649 d~~~l~~~i~~~DvVI~~~p~~~ 671 (1053)
....+.++++|+||.+...+-
T Consensus 63 --~~~~~~l~~aDvVVita~~~~ 83 (162)
T d1up7a1 63 --DTFEGAVVDAKYVIFQFRPGG 83 (162)
T ss_dssp --SSHHHHHTTCSEEEECCCTTH
T ss_pred --CCCCCCCCCCCEEEEECCCCC
T ss_conf --486233579999999335589
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=93.44 E-value=0.073 Score=26.14 Aligned_cols=31 Identities=13% Similarity=0.050 Sum_probs=25.0
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEECCCC
Q ss_conf 84999985521289899999629992524799
Q 001559 205 PLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSR 236 (1053)
Q Consensus 205 p~~v~i~G~G~vg~gA~~~~~~Lga~~V~~~d 236 (1053)
..+|+|+|+|.+|+.|...+...|++ |...|
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~-V~viE 32 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQ-VHIID 32 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCE-EEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCC-EEEEE
T ss_conf 98799989749999999999968997-89997
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=93.43 E-value=0.15 Score=24.04 Aligned_cols=79 Identities=13% Similarity=0.026 Sum_probs=50.7
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCC--
Q ss_conf 789949999374306999999993799984322223334436778627999988988899998619996289912799--
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSD-- 649 (1053)
Q Consensus 572 ~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d-- 649 (1053)
....+|+|+|+|++|..++..+...| . ..|.+++++.+|.+.. ..+....++...-.|
T Consensus 26 ~~G~~VlV~GaGgvGl~a~~~ak~~G-~------------------~~Vi~~d~~~~kl~~a-~~lGa~~~i~~~~~d~~ 85 (174)
T d1p0fa2 26 TPGSTCAVFGLGGVGFSAIVGCKAAG-A------------------SRIIGVGTHKDKFPKA-IELGATECLNPKDYDKP 85 (174)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHT-C------------------SEEEEECSCGGGHHHH-HHTTCSEEECGGGCSSC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHCC-C------------------CEEECCCCHHHHHHHH-HHCCCCEEECCCCCHHH
T ss_conf 99999999877716589999999819-8------------------5123127817899999-97199179768773067
Q ss_pred HHHHHHHH--CCCCEEEECCCCC
Q ss_conf 77899750--1660999448852
Q 001559 650 HKSLCKCI--SQVEIVISLLPAS 670 (1053)
Q Consensus 650 ~~~l~~~i--~~~DvVI~~~p~~ 670 (1053)
.+...+.. .++|+||.+++..
T Consensus 86 ~~~~~~~~~~~G~d~vid~~g~~ 108 (174)
T d1p0fa2 86 IYEVICEKTNGGVDYAVECAGRI 108 (174)
T ss_dssp HHHHHHHHTTSCBSEEEECSCCH
T ss_pred HHHHHHHHCCCCCCEEEECCCCC
T ss_conf 78888872279885899837871
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.37 E-value=0.073 Score=26.15 Aligned_cols=121 Identities=16% Similarity=0.147 Sum_probs=71.5
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEE----------CCHHHHHHHHHCCCCC
Q ss_conf 878994999937430699999999379998432222333443677862799998----------8988899998619996
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVAS----------LYLKDAEEVIEGIPNA 640 (1053)
Q Consensus 571 ~~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~----------r~~~~a~~l~~~~~~~ 640 (1053)
..+.++|+|-|.|.||+.++++|.+.| . .-|.|.| .+.+.+.+.......+
T Consensus 33 ~L~gktvaIqGfGnVG~~~A~~L~e~G-a------------------kvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~ 93 (293)
T d1hwxa1 33 GFGDKTFAVQGFGNVGLHSMRYLHRFG-A------------------KCVAVGESDGSIWNPDGIDPKELEDFKLQHGTI 93 (293)
T ss_dssp SSTTCEEEEECCSHHHHHHHHHHHHTT-C------------------EEEEEEETTEEECCTTCCCHHHHHHHHHTTSSS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC-C------------------EEEEEECCCHHHCCCCCCCHHHHHHHHHHCCCE
T ss_conf 878988999898899999999999879-9------------------899998452232066521168999999970970
Q ss_pred EEEE-ECCCCHHHHHHHHCCCCEEEECCCC-CCCHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHCCCEEEECCCC
Q ss_conf 2899-1279977899750166099944885-21179999988707909995136756999999999759869806889
Q 001559 641 EAVQ-LDVSDHKSLCKCISQVEIVISLLPA-SCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGEMGL 716 (1053)
Q Consensus 641 ~~~~-~d~~d~~~l~~~i~~~DvVI~~~p~-~~~~~v~~a~i~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~ii~g~G~ 716 (1053)
.... ... ..+.+ +-.+||++|-|.-. ..+...+. +-++.+|--.-+-|.+.+-++..+++|+.++++.=.
T Consensus 94 ~~~~~~~~-~~~~~--~~~~~DIliPaA~~~~I~~~~a~---~l~ak~I~EgAN~P~t~eA~~~L~~~gI~viPD~la 165 (293)
T d1hwxa1 94 LGFPKAKI-YEGSI--LEVDCDILIPAASEKQLTKSNAP---RVKAKIIAEGANGPTTPQADKIFLERNIMVIPDLYL 165 (293)
T ss_dssp TTCTTSCB-CCSCG--GGCCCSEEEECSSSSCBCTTTGG---GCCCSEEECCSSSCBCHHHHHHHHHTTCEEECHHHH
T ss_pred ECCCCCCC-CCCCC--CCCCCCEEEECCCCCCCCHHHHH---HHHHCEEECCCCCCCCCCHHHHHHHCCCEEECHHHH
T ss_conf 11332246-77420--16775588325431643387799---885387753278988833689999789878172652
|
| >d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]
Probab=93.23 E-value=0.16 Score=23.83 Aligned_cols=97 Identities=22% Similarity=0.117 Sum_probs=60.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCC---------C-CC----
Q ss_conf 949999374306999999993799984322223334436778627999988988899998619---------9-96----
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI---------P-NA---- 640 (1053)
Q Consensus 575 ~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~---------~-~~---- 640 (1053)
-||.|=|.|++||.+.+.+.+++. .++..++- +...+.++-.+ + .+
T Consensus 2 ikIgINGfGRIGR~v~R~~l~~~~-------------------~~ivaINd-~~d~~~~ayll~yDS~hG~~~~~v~~~~ 61 (171)
T d3cmco1 2 VKVGINGFGRIGRNVFRAALKNPD-------------------IEVVAVND-LTDANTLAHLLKYDSVHGRLDAEVSVNG 61 (171)
T ss_dssp EEEEEESCSHHHHHHHHHHTTCTT-------------------EEEEEEEC-SSCHHHHHHHHHEETTTEECSSCEEEET
T ss_pred EEEEEECCCHHHHHHHHHHHHCCC-------------------CEEEEECC-CCCHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 299997887899999999965899-------------------68999758-8877787555216544783013131169
Q ss_pred --------EEEEECCCCHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEEC
Q ss_conf --------289912799778997501660999448852117999998870790999513
Q 001559 641 --------EAVQLDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASY 691 (1053)
Q Consensus 641 --------~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~sy 691 (1053)
........|++++.=--.++|+||.|++.+....-+...++.|+.-|-+|.
T Consensus 62 ~~l~i~g~~i~i~~~~~p~~i~W~~~~vDiViEcTG~f~t~~~~~~hl~~gakkViiSa 120 (171)
T d3cmco1 62 NNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISA 120 (171)
T ss_dssp TEEEETTEEEEEECCSSGGGCCTGGGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESS
T ss_pred CCEEECCCCEEEEECCCHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEEC
T ss_conf 97796796304574289889665436986999816756788898998847874698721
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=93.04 E-value=0.18 Score=23.65 Aligned_cols=35 Identities=20% Similarity=0.175 Sum_probs=30.4
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCCCEECCCC
Q ss_conf 87884999985521289899999629992524799
Q 001559 202 GICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSR 236 (1053)
Q Consensus 202 ~i~p~~v~i~G~G~vg~gA~~~~~~Lga~~V~~~d 236 (1053)
++.-.+|+|-|.|+||..+.+.+..+|++.|...|
T Consensus 28 ~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD 62 (242)
T d1v9la1 28 GIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSD 62 (242)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 97999999989889999999999976983799606
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=92.87 E-value=0.19 Score=23.49 Aligned_cols=104 Identities=15% Similarity=0.138 Sum_probs=70.2
Q ss_pred CEEEEECC----CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCH
Q ss_conf 94999937----43069999999937999843222233344367786279999889888999986199962899127997
Q 001559 575 SSVLIIGA----GRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 575 ~~vliiGa----G~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
++|.|+|+ +..|+.+.+.|.+.| + +|.-.+.+. +.+.+.. -.
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g-~-------------------~V~pVnP~~-------~~i~G~~-------~y 47 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKG-F-------------------EVLPVNPNY-------DEIEGLK-------CY 47 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTT-C-------------------EEEEECTTC-------SEETTEE-------CB
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHCC-C-------------------EEEEECCCC-------CCCCCCC-------CC
T ss_conf 679998426999980999999999889-9-------------------799981334-------2215854-------55
Q ss_pred HHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHCCCEEEEC
Q ss_conf 789975016609994488521179999988707909995136756999999999759869806
Q 001559 651 KSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILGE 713 (1053)
Q Consensus 651 ~~l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~ii~g 713 (1053)
.++.++-...|+++-++|+.....+.+.|++.|...+-+---.. -.++.+.|+++|+.++..
T Consensus 48 ~sl~~lp~~~D~vvi~vp~~~~~~~l~~~~~~g~k~v~~~~g~~-~~~~~~~a~~~gi~vigp 109 (116)
T d1y81a1 48 RSVRELPKDVDVIVFVVPPKVGLQVAKEAVEAGFKKLWFQPGAE-SEEIRRFLEKAGVEYSFG 109 (116)
T ss_dssp SSGGGSCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSC-CHHHHHHHHHHTCEEECS
T ss_pred CCCHHCCCCCEEEEEEECHHHHHHHHHHHHHCCCCEEEECCCHH-HHHHHHHHHHCCCEEECC
T ss_conf 66111021103799981789999999999866996588506521-199999999859989938
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=92.86 E-value=0.19 Score=23.49 Aligned_cols=96 Identities=23% Similarity=0.141 Sum_probs=61.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHC--CC----C----C----
Q ss_conf 94999937430699999999379998432222333443677862799998898889999861--99----9----6----
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEG--IP----N----A---- 640 (1053)
Q Consensus 575 ~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~--~~----~----~---- 640 (1053)
+||.|=|.|++||.+.+.|...+ + ++..++- ....+.++-. +. + +
T Consensus 1 ikigINGfGRIGR~~~R~l~~~~-i-------------------~iv~INd-~~~~~~~ayLl~yDS~hG~~~~~v~~~~ 59 (168)
T d2g82a1 1 MKVGINGFGRIGRQVFRILHSRG-V-------------------EVALIND-LTDNKTLAHLLKYDSIYHRFPGEVAYDD 59 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHT-C-------------------CEEEEEC-SSCHHHHHHHHHCCTTTCSCSSCEEECS
T ss_pred CEEEEECCCHHHHHHHHHHHCCC-C-------------------EEEEECC-CCCHHHHHHEEECCCCCCCCCCCCCCCC
T ss_conf 98999778689999999985599-8-------------------7999777-8531001020220456576533333566
Q ss_pred -------E-EEEECCCCHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEEC
Q ss_conf -------2-89912799778997501660999448852117999998870790999513
Q 001559 641 -------E-AVQLDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASY 691 (1053)
Q Consensus 641 -------~-~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~sy 691 (1053)
. +......|++++.-.-.++|+||.|++.+....-+...++.|+.-|-+|.
T Consensus 60 ~~l~i~g~~I~~~~~~~p~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSA 118 (168)
T d2g82a1 60 QYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITA 118 (168)
T ss_dssp SEEEETTEEEEEECCSSGGGCCTGGGTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESS
T ss_pred CEEEECCEEEEEEECCCHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHCCCCCEEEECC
T ss_conf 41676656689872599678733202775267514333556776522035663455214
|
| >d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Thermus thermophilus [TaxId: 274]
Probab=92.82 E-value=0.15 Score=24.14 Aligned_cols=112 Identities=20% Similarity=0.222 Sum_probs=73.3
Q ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCHH
Q ss_conf 899499993-7430699999999379998432222333443677862799998898889999861999628991279977
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 573 ~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
+..||++-| .|..|+..++...+.| .-.|+.-++.+.-.-.+ ++.+. | ..+
T Consensus 6 k~trVivQGiTG~~G~~ht~~m~~yG---------------------T~iVaGVtPgkgG~~~~---giPVf--~--tV~ 57 (121)
T d1oi7a1 6 RETRVLVQGITGREGQFHTKQMLTYG---------------------TKIVAGVTPGKGGMEVL---GVPVY--D--TVK 57 (121)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHT---------------------CEEEEEECTTCTTCEET---TEEEE--S--SHH
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHC---------------------CCEEEEEECCCCCCEEE---CCCHH--H--HHH
T ss_conf 99968997688808889999999858---------------------70276352289985797---77107--1--699
Q ss_pred HHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEE--CCC-HHHHHHHHHHHHCCCEEEEC
Q ss_conf 899750166099944885211799999887079099951--367-56999999999759869806
Q 001559 652 SLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTAS--YID-DSMSKLDEKAKGAGITILGE 713 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~s--y~~-~~~~~L~~~Ak~~Gv~ii~g 713 (1053)
+..+. .++|+-+-.+|+.+...-+..++++|..++-+. .+| .+|..+.+.+++.+..+++|
T Consensus 58 eAv~~-~~~d~SvIfVPp~~a~dAi~EAi~agI~liv~ITEgVPv~Dm~~i~~~~~~~~~~liGg 121 (121)
T d1oi7a1 58 EAVAH-HEVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALGSRLIGG 121 (121)
T ss_dssp HHHHH-SCCSEEEECCCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCEEEES
T ss_pred HHHHH-CCCEEEEEEECHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECC
T ss_conf 99871-29769999627778899999998679968999559998799999999997689988487
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=92.81 E-value=0.11 Score=24.92 Aligned_cols=35 Identities=23% Similarity=0.314 Sum_probs=30.6
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 7899499993743069999999937999843222233344367786279999889
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY 626 (1053)
Q Consensus 572 ~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~ 626 (1053)
...++|+|||+|-+|-.+|..|+++| + +|+|.+|.
T Consensus 4 ~~~~kVvVIGaGiaGl~~A~~L~~~G-~-------------------~V~vier~ 38 (268)
T d1c0pa1 4 HSQKRVVVLGSGVIGLSSALILARKG-Y-------------------SVHILARD 38 (268)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHHHTT-C-------------------EEEEEESS
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC-C-------------------CEEEEECC
T ss_conf 89996899995099999999999789-9-------------------78999688
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=92.67 E-value=0.092 Score=25.50 Aligned_cols=70 Identities=20% Similarity=0.228 Sum_probs=43.1
Q ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHH
Q ss_conf 99499993-74306999999993799984322223334436778627999988988899998619996289912799778
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
..||+|.| ++++|+.+++.|++.| .+|.+++|+.++.. ........++.+.+.
T Consensus 2 ~gkVlITGas~GIG~aia~~l~~~G--------------------~~V~~~~~~~~~~~------~~~~~~~~~~~~~~~ 55 (235)
T d1ooea_ 2 SGKVIVYGGKGALGSAILEFFKKNG--------------------YTVLNIDLSANDQA------DSNILVDGNKNWTEQ 55 (235)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTT--------------------EEEEEEESSCCTTS------SEEEECCTTSCHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCCHHCC------CCCCEECCCCCCHHH
T ss_conf 8879999788989999999999879--------------------99999979810211------235342155673048
Q ss_pred -------HHHHH--CCCCEEEECCCC
Q ss_conf -------99750--166099944885
Q 001559 653 -------LCKCI--SQVEIVISLLPA 669 (1053)
Q Consensus 653 -------l~~~i--~~~DvVI~~~p~ 669 (1053)
..... ...|++||+.+.
T Consensus 56 ~~~~~~~~~~~~~~g~iD~linnAG~ 81 (235)
T d1ooea_ 56 EQSILEQTASSLQGSQVDGVFCVAGG 81 (235)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 99999999998457983699977733
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=92.62 E-value=0.2 Score=23.28 Aligned_cols=90 Identities=12% Similarity=0.214 Sum_probs=57.0
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCH
Q ss_conf 87899499993743069999999937999843222233344367786279999889888999986199962899127997
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDH 650 (1053)
Q Consensus 571 ~~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~ 650 (1053)
.....||.|||+|-.|+-++....+.| .++.+.|.+.+.-- ..+. -+.+..+..|.
T Consensus 8 ~~~~~kigIlGgGQL~rMla~aA~~lG--------------------~~v~v~d~~~~~PA---~~va-~~~i~~~~~d~ 63 (111)
T d1kjqa2 8 RPAATRVMLLGSGELGKEVAIECQRLG--------------------VEVIAVDRYADAPA---MHVA-HRSHVINMLDG 63 (111)
T ss_dssp STTCCEEEEESCSHHHHHHHHHHHTTT--------------------CEEEEEESSTTCGG---GGGS-SEEEECCTTCH
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHCC--------------------CEEEEECCCCCCCH---HHCC-CEEEECCCCCH
T ss_conf 999979999937798999999999889--------------------98999849999836---5517-76899887899
Q ss_pred HHHHHHHC--CCCEEEECCCCCCCHHHHHHHHHHCCE
Q ss_conf 78997501--660999448852117999998870790
Q 001559 651 KSLCKCIS--QVEIVISLLPASCHVMVANACIEFKKH 685 (1053)
Q Consensus 651 ~~l~~~i~--~~DvVI~~~p~~~~~~v~~a~i~~g~~ 685 (1053)
+.+.++.. ++|+|.--.-. ....+.+.+-+.|+.
T Consensus 64 ~~l~~~~~~~~~DviT~E~En-I~~~~L~~le~~g~~ 99 (111)
T d1kjqa2 64 DALRRVVELEKPHYIVPEIEA-IATDMLIQLEEEGLN 99 (111)
T ss_dssp HHHHHHHHHHCCSEEEECSSC-SCHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHCCCEEEEEECC-CCHHHHHHHHHCCCE
T ss_conf 999999986277568887367-689999999977985
|
| >d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Homoserine dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.62 E-value=0.033 Score=28.41 Aligned_cols=118 Identities=15% Similarity=0.140 Sum_probs=61.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEE-EEEECCH-------------HHHHHHHHCCC
Q ss_conf 899499993743069999999937999843222233344367786279-9998898-------------88999986199
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRV-LVASLYL-------------KDAEEVIEGIP 638 (1053)
Q Consensus 573 ~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v-~v~~r~~-------------~~a~~l~~~~~ 638 (1053)
++.+|.++|.|.||+.+++.|.+.... + +.++ .+++... ...++.... .
T Consensus 3 k~i~I~l~G~G~VG~~l~~~l~~~~~~-----l-----------~~~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~-~ 65 (168)
T d1ebfa1 3 KVVNVAVIGAGVVGSAFLDQLLAMKST-----I-----------TYNLVLLAEAERSLISKDFSPLNVGSDWKAALAA-S 65 (168)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHCCCS-----S-----------EEEEEEEECSSBEEECSSCSCCSCTTCHHHHHHT-C
T ss_pred CEEEEEEEECCHHHHHHHHHHHHHHHH-----H-----------HHHEEEEEEEEEEEECCCCCCHHHHHHHHHHHHH-C
T ss_conf 778899990788999999999986777-----6-----------5423778875444643445654766666643002-0
Q ss_pred CCEEEEECCCCHHHHHHHHC---CCCEEEECCCCCCCHHHHHHHHHHCCEEEEEEC--CCHH---HHHHHHHHHHCCCEE
Q ss_conf 96289912799778997501---660999448852117999998870790999513--6756---999999999759869
Q 001559 639 NAEAVQLDVSDHKSLCKCIS---QVEIVISLLPASCHVMVANACIEFKKHLVTASY--IDDS---MSKLDEKAKGAGITI 710 (1053)
Q Consensus 639 ~~~~~~~d~~d~~~l~~~i~---~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~sy--~~~~---~~~L~~~Ak~~Gv~i 710 (1053)
. ....+.+.+.+.+. ..++++.|+...-.......+++.|+|+|+..= .... -.+|.+.+++.+. +
T Consensus 66 ~-----~~~~~~~~~~~~~~~~~~~~vivd~t~~~~~~~~~~~aL~~G~hVVTANK~~la~~~~~~~~L~~~a~~~~~-~ 139 (168)
T d1ebfa1 66 T-----TKTLPLDDLIAHLKTSPKPVILVDNTSSAYIAGFYTKFVENGISIATPNKKAFSSDLATWKALFSNKPTNGF-V 139 (168)
T ss_dssp C-----CBCCCHHHHHHHHTTCSSCEEEEECSCCHHHHTTHHHHHHTTCEEECCCCGGGSSCHHHHHHHTCCCTTCCC-E
T ss_pred C-----CCCCCHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCC-E
T ss_conf 2-----666648899998614887608997158827999999999869839925852255788999999999997895-7
Q ss_pred EEC
Q ss_conf 806
Q 001559 711 LGE 713 (1053)
Q Consensus 711 i~g 713 (1053)
.-+
T Consensus 140 ~yE 142 (168)
T d1ebfa1 140 YHE 142 (168)
T ss_dssp ECG
T ss_pred EEE
T ss_conf 995
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.52 E-value=0.21 Score=23.19 Aligned_cols=36 Identities=22% Similarity=0.248 Sum_probs=30.3
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 87899499993743069999999937999843222233344367786279999889
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY 626 (1053)
Q Consensus 571 ~~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~ 626 (1053)
..+.++|+|+|+|.+|..-++.|.+.| .+|+|++..
T Consensus 10 ~l~gkrvLViGgG~va~~ka~~Ll~~G--------------------A~VtVvap~ 45 (150)
T d1kyqa1 10 QLKDKRILLIGGGEVGLTRLYKLMPTG--------------------CKLTLVSPD 45 (150)
T ss_dssp CCTTCEEEEEEESHHHHHHHHHHGGGT--------------------CEEEEEEEE
T ss_pred EECCCEEEEECCCHHHHHHHHHHHHCC--------------------CEEEEEECC
T ss_conf 108987999897999999999999789--------------------979999188
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=92.47 E-value=0.15 Score=24.08 Aligned_cols=37 Identities=19% Similarity=0.126 Sum_probs=31.5
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCH
Q ss_conf 878994999937430699999999379998432222333443677862799998898
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL 627 (1053)
Q Consensus 571 ~~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~ 627 (1053)
..+.++|+|||+|-+|-.+|.+|+++| + +|+|.+++.
T Consensus 40 ~~~~k~V~IIGaGPAGL~AA~~la~~G-~-------------------~Vtl~E~~~ 76 (179)
T d1ps9a3 40 AVQKKNLAVVGAGPAGLAFAINAAARG-H-------------------QVTLFDAHS 76 (179)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHTTT-C-------------------EEEEEESSS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHC-C-------------------CEEEEECCC
T ss_conf 777758999896599999999998632-4-------------------568983367
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=92.28 E-value=0.1 Score=25.18 Aligned_cols=30 Identities=20% Similarity=0.117 Sum_probs=19.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEECCCC
Q ss_conf 4999985521289899999629992524799
Q 001559 206 LVFIFTGSGNVSLGAQEIFKLLPHTFVEPSR 236 (1053)
Q Consensus 206 ~~v~i~G~G~vg~gA~~~~~~Lga~~V~~~d 236 (1053)
.+|+|+|+|.+|+.|...|.+.|.+ |+..|
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~G~~-V~vlE 31 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIHGLN-VTVFE 31 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTSCE-EEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCC-EEEEE
T ss_conf 9899989688999999999868998-99995
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=92.07 E-value=0.22 Score=23.07 Aligned_cols=77 Identities=16% Similarity=0.188 Sum_probs=50.8
Q ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 87899499993-74306999999993799984322223334436778627999988988899998619996289912799
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSD 649 (1053)
Q Consensus 571 ~~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d 649 (1053)
...+++|+|+| +.-+|++++..|...+ ..|+++...-
T Consensus 34 ~l~GK~v~VIGrS~~VG~Pla~lL~~~g--------------------atVt~~h~~t---------------------- 71 (166)
T d1b0aa1 34 DTFGLNAVVIGASNIVGRPMSMELLLAG--------------------CTTTVTHRFT---------------------- 71 (166)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHTTT--------------------CEEEEECSSC----------------------
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHH--------------------CCCCCCCCCC----------------------
T ss_conf 6135269998445434489999988753--------------------4432023456----------------------
Q ss_pred HHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEECC
Q ss_conf 7789975016609994488521179999988707909995136
Q 001559 650 HKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYI 692 (1053)
Q Consensus 650 ~~~l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~sy~ 692 (1053)
..+.+.++++|+||++++-.-. +....++.|..++|....
T Consensus 72 -~~l~~~~~~ADivI~a~G~p~~--i~~~~vk~g~vvIDvGi~ 111 (166)
T d1b0aa1 72 -KNLRHHVENADLLIVAVGKPGF--IPGDWIKEGAIVIDVGIN 111 (166)
T ss_dssp -SCHHHHHHHCSEEEECSCCTTC--BCTTTSCTTCEEEECCCE
T ss_pred -CHHHHHHHHHHHHHHHCCCCCC--CCCCCCCCCCEEEECCCE
T ss_conf -1267777666676553157442--421114799578843740
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=92.01 E-value=0.24 Score=22.80 Aligned_cols=116 Identities=20% Similarity=0.212 Sum_probs=65.0
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC----------HHHHH---------
Q ss_conf 87899499993743069999999937999843222233344367786279999889----------88899---------
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY----------LKDAE--------- 631 (1053)
Q Consensus 571 ~~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~----------~~~a~--------- 631 (1053)
+.+.++|+|-|.|.||+.++++|.+.| . .-+.+.|.+ .+...
T Consensus 28 ~l~g~~v~IqGfGnVG~~~a~~L~~~G-a------------------kvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~ 88 (242)
T d1v9la1 28 GIEGKTVAIQGMGNVGRWTAYWLEKMG-A------------------KVIAVSDINGVAYRKEGLNVELIQKNKGLTGPA 88 (242)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTT-C------------------EEEEEECSSCEEECTTCCCTHHHHHTTTSCHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC-C------------------EEEEEECCCCCCCCCCCCCHHHHHHHHHCCHHH
T ss_conf 979999999898899999999999769-8------------------379960654210165544289999986400366
Q ss_pred --HHHHCCCCCEEEEECCCCHHHHHHHHCCCCEEEECCCCC-CCHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHCCC
Q ss_conf --998619996289912799778997501660999448852-11799999887079099951367569999999997598
Q 001559 632 --EVIEGIPNAEAVQLDVSDHKSLCKCISQVEIVISLLPAS-CHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGI 708 (1053)
Q Consensus 632 --~l~~~~~~~~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~-~~~~v~~a~i~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv 708 (1053)
+.....+..+.+ .+.+.+-. .+||+++-|.... .+...+. +.++.+|--.-+-+-+.+-++..+++|+
T Consensus 89 ~~~~~~~~~~~~~~----~~~~~i~~--~~~DIliPcA~~~~I~~~~a~---~i~ak~IvegAN~p~t~~a~~~L~~rgI 159 (242)
T d1v9la1 89 LVELFTTKDNAEFV----KNPDAIFK--LDVDIFVPAAIENVIRGDNAG---LVKARLVVEGANGPTTPEAERILYERGV 159 (242)
T ss_dssp HHHHHHHTSCCCCC----SSTTGGGG--CCCSEEEECSCSSCBCTTTTT---TCCCSEEECCSSSCBCHHHHHHHHTTTC
T ss_pred HHHHHHHCCCCEEE----ECCCHHCC--CCCCEEEECCHHCCCCHHHHH---HCCCCEEEECCCCCCCHHHHHHHHHCCE
T ss_conf 77765521475575----17602103--354278424411003488887---4256779843788787338999873886
Q ss_pred EEEECC
Q ss_conf 698068
Q 001559 709 TILGEM 714 (1053)
Q Consensus 709 ~ii~g~ 714 (1053)
.++++.
T Consensus 160 ~~~PD~ 165 (242)
T d1v9la1 160 VVVPDI 165 (242)
T ss_dssp EEECHH
T ss_pred EEECCH
T ss_conf 995736
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=91.77 E-value=0.024 Score=29.30 Aligned_cols=71 Identities=17% Similarity=0.105 Sum_probs=45.4
Q ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC--HHHHHHHHHC------CC-CCEEEE
Q ss_conf 9499993-743069999999937999843222233344367786279999889--8889999861------99-962899
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY--LKDAEEVIEG------IP-NAEAVQ 644 (1053)
Q Consensus 575 ~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~--~~~a~~l~~~------~~-~~~~~~ 644 (1053)
.||.|+| +|.+|..++..|...+-. .++.+.|.+ .+.++..+.. ++ ...+..
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~l~------------------~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~ 62 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRDIA------------------DEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ 62 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCC------------------SEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCC------------------CEEEEEECCCCCCCCCEEECCHHHCCCCCCCCEEEE
T ss_conf 96999979981899999999837988------------------789999467860346354213320444368856864
Q ss_pred ECCCCHHHHHHHHCCCCEEEECCCCC
Q ss_conf 12799778997501660999448852
Q 001559 645 LDVSDHKSLCKCISQVEIVISLLPAS 670 (1053)
Q Consensus 645 ~d~~d~~~l~~~i~~~DvVI~~~p~~ 670 (1053)
. +. +.++++|+||.+.+..
T Consensus 63 ~---~~----~~~~~aDiVvitaG~~ 81 (142)
T d1o6za1 63 G---GY----EDTAGSDVVVITAGIP 81 (142)
T ss_dssp C---CG----GGGTTCSEEEECCCCC
T ss_pred C---CH----HHHHHCCEEEEECCCC
T ss_conf 8---77----7741347899962254
|
| >d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=91.65 E-value=0.26 Score=22.54 Aligned_cols=97 Identities=16% Similarity=0.043 Sum_probs=63.3
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC---CHHHHHHHHHCC------CC-C-----
Q ss_conf 49999374306999999993799984322223334436778627999988---988899998619------99-6-----
Q 001559 576 SVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASL---YLKDAEEVIEGI------PN-A----- 640 (1053)
Q Consensus 576 ~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r---~~~~a~~l~~~~------~~-~----- 640 (1053)
||.|=|.|++||.+.+.+..++. .++..++- +.+.+..+.+.- +. +
T Consensus 2 kigINGfGRIGR~v~R~~~~~~~-------------------~~iv~INd~~~d~~~~ayLlkyDS~hG~~~~~v~~~~~ 62 (166)
T d2b4ro1 2 KLGINGFGRIGRLVFRAAFGRKD-------------------IEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADG 62 (166)
T ss_dssp EEEEECCSHHHHHHHHHHHTCSS-------------------EEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETT
T ss_pred EEEEECCCHHHHHHHHHHHHCCC-------------------CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC
T ss_conf 69997887899999999965899-------------------68999789988867764554166435540011014786
Q ss_pred -------EEEEECCCCHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEEC
Q ss_conf -------289912799778997501660999448852117999998870790999513
Q 001559 641 -------EAVQLDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASY 691 (1053)
Q Consensus 641 -------~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~sy 691 (1053)
.+......|+..+.=.-.++|+||.|++.+....-+...++.|+..|-+|.
T Consensus 63 ~l~i~~~~I~i~~~~~p~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSA 120 (166)
T d2b4ro1 63 FLLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMSA 120 (166)
T ss_dssp EEEESSCEEEEECCSSGGGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESS
T ss_pred EEEECCCEEEEEECCCHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEC
T ss_conf 6996696899996799678644335787799821313320344555335887799823
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=91.55 E-value=0.14 Score=24.29 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=32.2
Q ss_pred CCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCEECCCC
Q ss_conf 15999887884999985521289899999629992524799
Q 001559 196 TLGLPSGICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSR 236 (1053)
Q Consensus 196 ~~g~p~~i~p~~v~i~G~G~vg~gA~~~~~~Lga~~V~~~d 236 (1053)
..+++..-.|.+|+|+|+|.+|+-|...|.+.|++ |+..|
T Consensus 21 ~~~~~~~~~pkkV~IIGaG~aGLsaA~~L~~~G~~-V~vlE 60 (370)
T d2iida1 21 RNGLKATSNPKHVVIVGAGMAGLSAAYVLAGAGHQ-VTVLE 60 (370)
T ss_dssp HHCSCCCSSCCEEEEECCBHHHHHHHHHHHHHTCE-EEEEC
T ss_pred HCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCC-EEEEE
T ss_conf 64799999999699989888999999999878998-89995
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=91.50 E-value=0.18 Score=23.52 Aligned_cols=24 Identities=29% Similarity=0.263 Sum_probs=12.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCC
Q ss_conf 994999937430699999999379
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFG 597 (1053)
Q Consensus 574 ~~~vliiGaG~vg~~ia~~L~~~g 597 (1053)
++||+|||||-.|-.+|..|++.+
T Consensus 4 ~KrVaIIGaG~sGl~~A~~L~~~~ 27 (335)
T d2gv8a1 4 IRKIAIIGAGPSGLVTAKALLAEK 27 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHHC
T ss_conf 986999895999999999999829
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=91.50 E-value=0.27 Score=22.44 Aligned_cols=35 Identities=26% Similarity=0.251 Sum_probs=29.4
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCCCEECCCC
Q ss_conf 87884999985521289899999629992524799
Q 001559 202 GICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSR 236 (1053)
Q Consensus 202 ~i~p~~v~i~G~G~vg~gA~~~~~~Lga~~V~~~d 236 (1053)
++.-.+|+|-|.|+||..+.+.+..+|++.|.+.|
T Consensus 33 ~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD 67 (255)
T d1bgva1 33 TLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSG 67 (255)
T ss_dssp CSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 97899999979788999999999985985899965
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=91.48 E-value=0.042 Score=27.73 Aligned_cols=83 Identities=13% Similarity=0.094 Sum_probs=49.0
Q ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--EEEEEECCHHHHHHHHHCCC-----CCEEE
Q ss_conf 78994999937-430699999999379998432222333443677862--79999889888999986199-----96289
Q 001559 572 KGTSSVLIIGA-GRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDI--RVLVASLYLKDAEEVIEGIP-----NAEAV 643 (1053)
Q Consensus 572 ~~~~~vliiGa-G~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~--~v~v~~r~~~~a~~l~~~~~-----~~~~~ 643 (1053)
++.+||.|+|| |.+|+.++..|+..+-+ .+.... ++...+++.++++.....+. ....+
T Consensus 2 ~~p~KV~IiGA~G~VG~~~a~~l~~~~l~-------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (154)
T d1y7ta1 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEML-------------GKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGL 68 (154)
T ss_dssp CCCEEEEESSTTSHHHHHHHHHHHTTTTT-------------CTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCC-------------CCCCCHHHHHHCCCCCHHHHCCCHHHHHCCCCCCCCCC
T ss_conf 99988999899977999999999846413-------------66541037675053305667175465413554445665
Q ss_pred EECCCCHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 9127997789975016609994488521
Q 001559 644 QLDVSDHKSLCKCISQVEIVISLLPASC 671 (1053)
Q Consensus 644 ~~d~~d~~~l~~~i~~~DvVI~~~p~~~ 671 (1053)
... ....+.++++|+||.+.+...
T Consensus 69 ~~~----~~~~~~~~~advViitaG~~~ 92 (154)
T d1y7ta1 69 EAT----DDPKVAFKDADYALLVGAAPR 92 (154)
T ss_dssp EEE----SCHHHHTTTCSEEEECCCCCC
T ss_pred CCC----CCHHHHCCCCCEEEEECCCCC
T ss_conf 467----750210353357876057678
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=91.43 E-value=0.17 Score=23.73 Aligned_cols=35 Identities=23% Similarity=0.192 Sum_probs=31.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCH
Q ss_conf 8994999937430699999999379998432222333443677862799998898
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL 627 (1053)
Q Consensus 573 ~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~ 627 (1053)
...||+|||+|-.|-.+|..|++.| ++|+|.+++.
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~~G--------------------~~v~v~Er~~ 37 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRDAG--------------------VDVDVYERSP 37 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTT--------------------CEEEEECSSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--------------------CCEEEEECCC
T ss_conf 9992999894889999999999779--------------------9999992899
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.42 E-value=0.19 Score=23.37 Aligned_cols=32 Identities=22% Similarity=0.141 Sum_probs=27.3
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCEECCCC
Q ss_conf 884999985521289899999629992524799
Q 001559 204 CPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSR 236 (1053)
Q Consensus 204 ~p~~v~i~G~G~vg~gA~~~~~~Lga~~V~~~d 236 (1053)
+..+|+|+|+|.+|+-|...|.+.|++ |++.|
T Consensus 4 ~~~kViVIGaG~aGL~aA~~L~~~G~~-V~VlE 35 (449)
T d2dw4a2 4 KTGKVIIIGSGVSGLAAARQLQSFGMD-VTLLE 35 (449)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTCE-EEEEC
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCC-EEEEE
T ss_conf 999489989888999999999858999-89990
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.39 E-value=0.22 Score=23.07 Aligned_cols=27 Identities=22% Similarity=0.119 Sum_probs=21.8
Q ss_pred EEEEEEC-CCHHHHHHHHHHHHCCCCEE
Q ss_conf 4999985-52128989999962999252
Q 001559 206 LVFIFTG-SGNVSLGAQEIFKLLPHTFV 232 (1053)
Q Consensus 206 ~~v~i~G-~G~vg~gA~~~~~~Lga~~V 232 (1053)
-.++|.| +|-||.-|+++++.+|++.+
T Consensus 33 ~~VLI~gaaGGVG~~aiQlak~~Ga~Vi 60 (176)
T d1xa0a2 33 GPVLVTGATGGVGSLAVSMLAKRGYTVE 60 (176)
T ss_dssp CCEEESSTTSHHHHHHHHHHHHTTCCEE
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEE
T ss_conf 8899994431488999999998199417
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.31 E-value=0.28 Score=22.32 Aligned_cols=35 Identities=17% Similarity=0.130 Sum_probs=21.2
Q ss_pred CCCCEEEEEECCCHHHHHHHHHH-HHCCCCEECCCC
Q ss_conf 87884999985521289899999-629992524799
Q 001559 202 GICPLVFIFTGSGNVSLGAQEIF-KLLPHTFVEPSR 236 (1053)
Q Consensus 202 ~i~p~~v~i~G~G~vg~gA~~~~-~~Lga~~V~~~d 236 (1053)
++.-.+|+|-|.|+||..+.+.+ +.+|++.|...|
T Consensus 29 ~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD 64 (239)
T d1gtma1 29 TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSD 64 (239)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEECCC
T ss_conf 768999999798899999999999836720020013
|
| >d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Escherichia coli [TaxId: 562]
Probab=91.28 E-value=0.28 Score=22.30 Aligned_cols=111 Identities=15% Similarity=0.187 Sum_probs=71.2
Q ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCHH
Q ss_conf 899499993-7430699999999379998432222333443677862799998898889999861999628991279977
Q 001559 573 GTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHK 651 (1053)
Q Consensus 573 ~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~ 651 (1053)
+..||+|-| .|..|+..++...+.| .-.|+.-++.+.-+.... +.+. |. -.+
T Consensus 5 k~trVlvQGiTG~~G~~ht~~m~~yG---------------------T~vVaGVtPgkgG~~~~g---iPVf--~s-V~e 57 (119)
T d2nu7a1 5 KNTKVICQGFTGSQGTFHSEQAIAYG---------------------TKMVGGVTPGKGGTTHLG---LPVF--NT-VRE 57 (119)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHT---------------------CEEEEEECTTCTTEEETT---EEEE--SS-HHH
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHC---------------------CCEEEEECCCCCCCCCCC---CCHH--HH-HHH
T ss_conf 99828997688848789999999858---------------------832898725988763079---8615--58-999
Q ss_pred HHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEE--CCC-HHHHHHHHHHHHCCCEEEE
Q ss_conf 899750166099944885211799999887079099951--367-5699999999975986980
Q 001559 652 SLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTAS--YID-DSMSKLDEKAKGAGITILG 712 (1053)
Q Consensus 652 ~l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~s--y~~-~~~~~L~~~Ak~~Gv~ii~ 712 (1053)
.+.+ .++|.-+-.+|+.+...-+..++++|..++-+. .+| .+|..+...++++|+.++.
T Consensus 58 Av~~--~~~~~SvIfVPp~~a~dA~~EAi~agI~~iV~ITEgIP~~D~~~i~~~~~~~~~~liG 119 (119)
T d2nu7a1 58 AVAA--TGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMIG 119 (119)
T ss_dssp HHHH--HCCCEEEECCCGGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEEC
T ss_pred HHHH--HCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEC
T ss_conf 9997--6998699962478888999999977998799935999879999999998537999859
|
| >d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]
Probab=91.00 E-value=0.3 Score=22.13 Aligned_cols=98 Identities=15% Similarity=0.032 Sum_probs=60.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC--CHHHHHHHHHCC---CC----C-----
Q ss_conf 949999374306999999993799984322223334436778627999988--988899998619---99----6-----
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASL--YLKDAEEVIEGI---PN----A----- 640 (1053)
Q Consensus 575 ~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r--~~~~a~~l~~~~---~~----~----- 640 (1053)
.||.|=|.|++||.+.+.+.+.+ + .-+.|-+. +.+....+.+.- ++ +
T Consensus 1 ~kIgINGfGRIGR~~~R~~~~~~-~------------------~ivaINd~~~~~~~~~yLlkyDS~hG~~~~~i~~~~~ 61 (169)
T d1dssg1 1 SKIGINGFGRIGRLVLRAALEMG-A------------------QVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDG 61 (169)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHT-C------------------CEEEEECTTSCHHHHHHHHHCCTTTCCCSSCEEEETT
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-C------------------CEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECC
T ss_conf 95899787689999999998599-9------------------4999788874789999987122416885885999699
Q ss_pred -------EEEEECCCCHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEEC
Q ss_conf -------289912799778997501660999448852117999998870790999513
Q 001559 641 -------EAVQLDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASY 691 (1053)
Q Consensus 641 -------~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~sy 691 (1053)
++......+++++.=.-.++|+||.|++.+....-+...++.|+..|-++.
T Consensus 62 ~l~ing~~I~~~~~~~p~~i~W~~~gvD~ViEcTG~f~~~~~~~~hl~~gakkViisa 119 (169)
T d1dssg1 62 ALVVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIISA 119 (169)
T ss_dssp EEEETTEEEEEECCSSGGGCCHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESS
T ss_pred EEEECCEEEEEEECCCHHHCCCCCCCCCEEEECCCEECCHHHHHHHHHCCCCEEEECC
T ss_conf 9999999999996699688884313898899647517589999999866986476438
|
| >d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: L-alanine dehydrogenase-like domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=90.84 E-value=0.24 Score=22.74 Aligned_cols=114 Identities=17% Similarity=0.191 Sum_probs=71.7
Q ss_pred HHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCEEEECCCCCCCCCEEEECCCCCCCCCCC
Q ss_conf 21059794999720136899964399989985518999439999841389963210146555687277279988767887
Q 001559 296 KKIAPYASVIVNCMYWEQRFPRLLSTQQLQDLVRKGCPLVGISDITCDIGGSLEFVNRTTSIDSSFFRYDPLSDSYHDDL 375 (1053)
Q Consensus 296 ~~~~~~~diiIn~~~~~~~~P~Lit~e~v~~l~k~~~~gsvIvDis~D~gG~iE~t~~~tt~~~P~~~~~~~~~~~~~~~ 375 (1053)
++....+|+|+.-- .+.+.-...+.++.| | ++++++-.- +.-.+-|.+.. .
T Consensus 62 ~~~~~~~diilkV~---~P~~~e~~~~ei~~l-k---~g~~li~~l-~p~~~~~~~~~---------------------l 112 (194)
T d1l7da2 62 AQALSQADVVWKVQ---RPMTAEEGTDEVALI-K---EGAVLMCHL-GALTNRPVVEA---------------------L 112 (194)
T ss_dssp HHHHSSCSEEEEEE---CCCCGGGSCCGGGGS-C---TTCEEEEEC-CGGGCHHHHHH---------------------H
T ss_pred HHHHHCCCCEEEEC---CCCCCCCCHHHHHHC-C---CCEEEEEEC-CCCCCHHHHHH---------------------H
T ss_conf 56542133126745---875454564676432-6---763999851-64446167789---------------------8
Q ss_pred CCCCEEEEECCCHH--H-------------HHHHHHHHHHHHHHHHHHHHHHCCCCCC---CC-CHHHHHHHHHCCCEEC
Q ss_conf 89983999328810--5-------------8899999999999999999820699877---67-8887724534298551
Q 001559 376 EGNGLVCQAVDTLP--T-------------EFAKEASQHFGDILLEFIGSLSSTVDFT---EL-PSHLRRACIAHGGALT 436 (1053)
Q Consensus 376 ~~~gV~i~~vdnLP--s-------------~lp~~AS~~fs~~l~~~l~~l~~~~~~~---~~-~~~l~~a~i~~~G~lt 436 (1053)
..++|+.++.+-+| + ..-+.|+..++++|.+|+..+.+..... ++ +..+.+.+++++|.++
T Consensus 113 ~~~~it~~a~e~ipRisraQ~md~Lssqa~iaG~~a~~~~a~~l~~~~~~~~~~~~~~lvig~~~~~l~~i~~~~~G~iv 192 (194)
T d1l7da2 113 TKRKITAYAMELMPRISRAQSMDILSSQSNLVAADASPLFAKNLLNFLTPHVDKDTKTLVMKLEDETVSGTCVTRDGAIV 192 (194)
T ss_dssp HHTTCEEEEGGGCCCSGGGGGGCHHHHHHHHGHHHHHHHHHHHHHHHHGGGEETTTTEECCCTTCHHHHHHEEEETTEEC
T ss_pred HHCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHEEECCCCEE
T ss_conf 75673698500034357788647767623344376899999998865432046677679978528765452252377460
Q ss_pred CC
Q ss_conf 89
Q 001559 437 TL 438 (1053)
Q Consensus 437 ~~ 438 (1053)
||
T Consensus 193 ~~ 194 (194)
T d1l7da2 193 HP 194 (194)
T ss_dssp CC
T ss_pred CC
T ss_conf 85
|
| >d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=90.32 E-value=0.34 Score=21.74 Aligned_cols=99 Identities=13% Similarity=0.034 Sum_probs=57.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCC------CC----C----
Q ss_conf 949999374306999999993799984322223334436778627999988988899998619------99----6----
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI------PN----A---- 640 (1053)
Q Consensus 575 ~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~------~~----~---- 640 (1053)
+||.|=|.|++||.+.+.+..+... ++++..++-. ...+.++-.+ ++ +
T Consensus 1 ikIgINGfGRIGR~v~R~~~~~~~~-----------------~i~ivaINd~-~~~~~~ayLlkyDSvhG~~~~~i~~~~ 62 (172)
T d1rm4a1 1 LKVAINGFGRIGRNFLRCWHGRKDS-----------------PLDVVVINDT-GGVKQASHLLKYDSILGTFDADVKTAG 62 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCSSC-----------------SEEEEEEECT-TCHHHHHHHHHCCTTTCSCSSCEEECT
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCC-----------------CEEEEEECCC-CCHHHHHHHHHCCCCCCCCCCEEEECC
T ss_conf 9899978777999999999868899-----------------8899998489-998999999805765333465067417
Q ss_pred --------EEEE-ECCCCHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEEC
Q ss_conf --------2899-12799778997501660999448852117999998870790999513
Q 001559 641 --------EAVQ-LDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASY 691 (1053)
Q Consensus 641 --------~~~~-~d~~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~sy 691 (1053)
..+. ....|++++.=.-.++|+||.||+.+....-+..-++.|+..|-+|.
T Consensus 63 ~~~~~ing~~I~~~~~~~p~~i~W~~~gvDiViEcTG~f~~~~~~~~hl~~GakkViiSA 122 (172)
T d1rm4a1 63 DSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITA 122 (172)
T ss_dssp TSEEEETTEEEEEECCSCGGGSCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSCEEESS
T ss_pred CCCEEECCEEEEEECCCCHHHCCHHHCCCCEEEECCCEECCHHHHHHHHHCCCCEEEEEC
T ss_conf 763377999999861799678981031998999647267558999888756973687604
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=90.30 E-value=0.11 Score=24.96 Aligned_cols=36 Identities=36% Similarity=0.393 Sum_probs=31.0
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 87899499993743069999999937999843222233344367786279999889
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY 626 (1053)
Q Consensus 571 ~~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~ 626 (1053)
+...++|+|||+|-.|-.+|.+|++.| + +|+|.+++
T Consensus 27 ~~~pkkV~IIGaG~aGLsaA~~L~~~G-~-------------------~V~vlE~~ 62 (370)
T d2iida1 27 TSNPKHVVIVGAGMAGLSAAYVLAGAG-H-------------------QVTVLEAS 62 (370)
T ss_dssp CSSCCEEEEECCBHHHHHHHHHHHHHT-C-------------------EEEEECSS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC-C-------------------CEEEEECC
T ss_conf 999996999898889999999998789-9-------------------88999589
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=90.15 E-value=0.36 Score=21.65 Aligned_cols=54 Identities=30% Similarity=0.337 Sum_probs=39.4
Q ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHHH
Q ss_conf 9499993-743069999999937999843222233344367786279999889888999986199962899127997789
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKSL 653 (1053)
Q Consensus 575 ~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~l 653 (1053)
|.++|.| ++++|+.+++.|++.| .+|.+++|+.+. .+......|+++....
T Consensus 2 K~alITGas~GIG~aiA~~la~~G--------------------a~V~i~~~~~~~--------~~~~~~~~d~~~~~~~ 53 (241)
T d1uaya_ 2 RSALVTGGASGLGRAAALALKARG--------------------YRVVVLDLRREG--------EDLIYVEGDVTREEDV 53 (241)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHT--------------------CEEEEEESSCCS--------SSSEEEECCTTCHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCCCC--------CCCEEEECCCCCHHHH
T ss_conf 889992898889999999999879--------------------989999787324--------6541864352320456
Q ss_pred HHH
Q ss_conf 975
Q 001559 654 CKC 656 (1053)
Q Consensus 654 ~~~ 656 (1053)
...
T Consensus 54 ~~~ 56 (241)
T d1uaya_ 54 RRA 56 (241)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 778
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=90.15 E-value=0.18 Score=23.56 Aligned_cols=57 Identities=39% Similarity=0.609 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHH-CCCEEEEEC
Q ss_conf 666211023589999999987383089835545588861799999986-799899981
Q 001559 996 MISAMALTVGIPAGIAAMLLLVNKIKTRGVLRPIEPEVYVPALDMLQA-YGIKLVEKS 1052 (1053)
Q Consensus 996 g~samarttG~p~aiaA~lil~g~i~~~GV~~P~~~~~y~p~l~~L~~-~GI~~~e~~ 1052 (1053)
+...+.+.++.+.+.++..+.++.+...|+..|+....+.|++++|.. +||.+.|+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~lk~l~~~~~i~~~ek~ 180 (182)
T d1e5qa1 123 GYSAMAKLVGVPCAVAVKFVLDGTISDRGVLAPMNSKINDPLMKELKEKYGIECKEKV 180 (182)
T ss_dssp BCCHHHHHHHHHHHHHHHHHHTTSSCCCEEECSCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_pred HCCHHHHHHCCHHHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 0220466634225899999713658993797576521333899998887398748886
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=90.03 E-value=0.22 Score=22.96 Aligned_cols=82 Identities=17% Similarity=0.128 Sum_probs=48.5
Q ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCH--HHHHHHHHCC-----CCCEEE
Q ss_conf 78994999937-430699999999379998432222333443677862799998898--8899998619-----996289
Q 001559 572 KGTSSVLIIGA-GRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL--KDAEEVIEGI-----PNAEAV 643 (1053)
Q Consensus 572 ~~~~~vliiGa-G~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~--~~a~~l~~~~-----~~~~~~ 643 (1053)
++..+|.|+|| |.+|+.++..|+... + |.......+.+.|... ..++.+.-.+ +.....
T Consensus 22 k~~~kV~I~GA~G~Ig~~l~~~La~g~-v------------~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~ 88 (175)
T d7mdha1 22 KKLVNIAVSGAAGMISNHLLFKLASGE-V------------FGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREV 88 (175)
T ss_dssp CCCEEEEEETTTSHHHHHHHHHHHHTT-T------------TCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCC-C------------CCCCCEEEEEEECCCCCCCHHCCHHHHHCCCCCCCCCCC
T ss_conf 788679998998589999999997275-2------------489964799985375542212011212000333454674
Q ss_pred EECCCCHHHHHHHHCCCCEEEECCCCC
Q ss_conf 912799778997501660999448852
Q 001559 644 QLDVSDHKSLCKCISQVEIVISLLPAS 670 (1053)
Q Consensus 644 ~~d~~d~~~l~~~i~~~DvVI~~~p~~ 670 (1053)
.. .....+.++++|+||-+.+..
T Consensus 89 ~~----~~~~~~~~~~aDvVvi~ag~~ 111 (175)
T d7mdha1 89 SI----GIDPYEVFEDVDWALLIGAKP 111 (175)
T ss_dssp EE----ESCHHHHTTTCSEEEECCCCC
T ss_pred CC----CCCCHHHCCCCCEEEEEECCC
T ss_conf 23----441021216773599952368
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=89.93 E-value=0.16 Score=23.97 Aligned_cols=34 Identities=18% Similarity=0.107 Sum_probs=29.6
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCH
Q ss_conf 994999937430699999999379998432222333443677862799998898
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL 627 (1053)
Q Consensus 574 ~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~ 627 (1053)
...|+|||+|-+|..+|.+|+++| .+|+|.+++.
T Consensus 4 ~~DvvIIGaGi~Gls~A~~La~~G--------------------~~V~vlE~~~ 37 (276)
T d1ryia1 4 HYEAVVIGGGIIGSAIAYYLAKEN--------------------KNTALFESGT 37 (276)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--------------------CCEEEECSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--------------------CCEEEEECCC
T ss_conf 187999996899999999999889--------------------9589995899
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=89.89 E-value=0.37 Score=21.51 Aligned_cols=35 Identities=23% Similarity=0.110 Sum_probs=23.2
Q ss_pred CCCCEEEEEECCCHHHHHHHHHH-HHCCCCEECCCC
Q ss_conf 87884999985521289899999-629992524799
Q 001559 202 GICPLVFIFTGSGNVSLGAQEIF-KLLPHTFVEPSR 236 (1053)
Q Consensus 202 ~i~p~~v~i~G~G~vg~gA~~~~-~~Lga~~V~~~d 236 (1053)
++.-.+|+|-|.|+||..+.+.+ +.+|++.|...|
T Consensus 28 ~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd 63 (234)
T d1b26a1 28 DPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSD 63 (234)
T ss_dssp CTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 868898999898889999999999866875487645
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=89.89 E-value=0.22 Score=23.05 Aligned_cols=33 Identities=30% Similarity=0.302 Sum_probs=28.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 9499993743069999999937999843222233344367786279999889
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY 626 (1053)
Q Consensus 575 ~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~ 626 (1053)
.+|+|||+|-+|-.+|.+|+++|. .+|+|.+++
T Consensus 2 ~dViIIGaGi~G~s~A~~La~~G~-------------------~~V~liE~~ 34 (305)
T d1pj5a2 2 PRIVIIGAGIVGTNLADELVTRGW-------------------NNITVLDQG 34 (305)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTC-------------------CCEEEECSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC-------------------CCEEEEECC
T ss_conf 989998948999999999997699-------------------818999688
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.88 E-value=0.21 Score=23.13 Aligned_cols=24 Identities=29% Similarity=0.598 Sum_probs=12.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCC
Q ss_conf 994999937430699999999379
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFG 597 (1053)
Q Consensus 574 ~~~vliiGaG~vg~~ia~~L~~~g 597 (1053)
.+||+|||+|-+|-.+|.+|++.|
T Consensus 4 ~~kVaIIGaGpaGl~aA~~l~~~G 27 (196)
T d1gtea4 4 SAKIALLGAGPASISCASFLARLG 27 (196)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTT
T ss_pred CCEEEEECCHHHHHHHHHHHHHCC
T ss_conf 997999997099999999999879
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.71 E-value=0.15 Score=24.18 Aligned_cols=29 Identities=24% Similarity=0.213 Sum_probs=22.7
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEECCCC
Q ss_conf 999985521289899999629992524799
Q 001559 207 VFIFTGSGNVSLGAQEIFKLLPHTFVEPSR 236 (1053)
Q Consensus 207 ~v~i~G~G~vg~gA~~~~~~Lga~~V~~~d 236 (1053)
.++|+|+|-+|+.|...+...|.+ |...|
T Consensus 3 dv~IIGaG~sGl~~A~~L~~~g~~-V~iiE 31 (298)
T d1i8ta1 3 DYIIVGSGLFGAVCANELKKLNKK-VLVIE 31 (298)
T ss_dssp EEEEECCSHHHHHHHHHHGGGTCC-EEEEC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCC-EEEEE
T ss_conf 599989759999999999968996-79998
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=89.62 E-value=0.2 Score=23.35 Aligned_cols=30 Identities=10% Similarity=0.063 Sum_probs=25.2
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEECCCC
Q ss_conf 4999985521289899999629992524799
Q 001559 206 LVFIFTGSGNVSLGAQEIFKLLPHTFVEPSR 236 (1053)
Q Consensus 206 ~~v~i~G~G~vg~gA~~~~~~Lga~~V~~~d 236 (1053)
++|+|+|+|.+|+-|...+.+.|++ |+..|
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~G~~-V~vlE 30 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSRGTD-AVLLE 30 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTTTCC-EEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCC-EEEEE
T ss_conf 9499999778999999999868998-99992
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.55 E-value=0.4 Score=21.34 Aligned_cols=74 Identities=14% Similarity=0.122 Sum_probs=40.8
Q ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCC--H-
Q ss_conf 9499993-74306999999993799984322223334436778627999988988899998619996289912799--7-
Q 001559 575 SSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSD--H- 650 (1053)
Q Consensus 575 ~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d--~- 650 (1053)
..|+|.| +|++|..++..+...| . ..|..+....++..++...+..-.+ +|..+ .
T Consensus 32 etVLI~gaaGgVG~~aiQlak~~G-a------------------~~vi~~~~~~e~~~~l~~~~gad~v--i~~~~~~~~ 90 (187)
T d1vj1a2 32 QTMVVSGAAGACGSLAGQIGHLLG-C------------------SRVVGICGTQEKCLFLTSELGFDAA--VNYKTGNVA 90 (187)
T ss_dssp CEEEESSTTSTTGGGHHHHHHHTT-C------------------SEEEEEESSHHHHHHHHHHSCCSEE--EETTSSCHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-C------------------CCEECCCCHHHHHHHHHHCCCCEEE--EECCCHHHH
T ss_conf 889997897436388999999829-8------------------6200233407777666403452378--631101589
Q ss_pred HHHHHHH-CCCCEEEECCCC
Q ss_conf 7899750-166099944885
Q 001559 651 KSLCKCI-SQVEIVISLLPA 669 (1053)
Q Consensus 651 ~~l~~~i-~~~DvVI~~~p~ 669 (1053)
+.+.+.. .++|+|+++++.
T Consensus 91 ~~~~~~~~~GvDvv~D~vGg 110 (187)
T d1vj1a2 91 EQLREACPGGVDVYFDNVGG 110 (187)
T ss_dssp HHHHHHCTTCEEEEEESSCH
T ss_pred HHHHHHHCCCCEEEEECCCC
T ss_conf 99999856586599955874
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=89.32 E-value=0.41 Score=21.24 Aligned_cols=92 Identities=14% Similarity=0.059 Sum_probs=56.2
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCC--
Q ss_conf 789949999374306999999993799984322223334436778627999988988899998619996289912799--
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSD-- 649 (1053)
Q Consensus 572 ~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d-- 649 (1053)
+...+|+|+|+|++|-.++..+...+. ..|.+.+++.+|.+... .+.-..++...-.+
T Consensus 27 k~g~~VlI~G~Gg~g~~~~~~~~~~g~-------------------~~Vi~~~~~~~rl~~a~-~~GAd~~in~~~~~~~ 86 (175)
T d1cdoa2 27 EPGSTCAVFGLGAVGLAAVMGCHSAGA-------------------KRIIAVDLNPDKFEKAK-VFGATDFVNPNDHSEP 86 (175)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC-------------------SEEEEECSCGGGHHHHH-HTTCCEEECGGGCSSC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH-------------------CHHEEECCHHHHHHHHH-HCCCCEEECCCCCCHH
T ss_conf 999999998368850068999999740-------------------21202435477878899-7298389758775215
Q ss_pred HHHHHHHH--CCCCEEEECCCCCCCHHHHHHHHHHC
Q ss_conf 77899750--16609994488521179999988707
Q 001559 650 HKSLCKCI--SQVEIVISLLPASCHVMVANACIEFK 683 (1053)
Q Consensus 650 ~~~l~~~i--~~~DvVI~~~p~~~~~~v~~a~i~~g 683 (1053)
.+...+.. .++|+++.+++..........+...+
T Consensus 87 ~~~~~~~~~~~G~d~vid~~G~~~~~~~a~~~~~~g 122 (175)
T d1cdoa2 87 ISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKG 122 (175)
T ss_dssp HHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTT
T ss_pred HHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCC
T ss_conf 777777611588624434158789999999973479
|
| >d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=89.29 E-value=0.41 Score=21.22 Aligned_cols=100 Identities=20% Similarity=0.144 Sum_probs=59.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC--CHHHHHHHHHC------CC-CC-----
Q ss_conf 949999374306999999993799984322223334436778627999988--98889999861------99-96-----
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASL--YLKDAEEVIEG------IP-NA----- 640 (1053)
Q Consensus 575 ~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r--~~~~a~~l~~~------~~-~~----- 640 (1053)
.||.|=|.|++||.+.+.+.++... +.++..++- +.+....+.+. ++ .+
T Consensus 1 ~kIgINGfGRIGR~v~R~~~~~~~~-----------------~i~vvaINd~~~~e~~ayLlkyDS~hG~~~~~v~~~~~ 63 (169)
T d1hdgo1 1 ARVAINGFGRIGRLVYRIIYERKNP-----------------DIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTEN 63 (169)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCT-----------------TCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSS
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCC-----------------CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCEEEEECC
T ss_conf 9799978896899999999866598-----------------98999963686378999997415504666855999799
Q ss_pred -------EEEEECCCCHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEEC
Q ss_conf -------289912799778997501660999448852117999998870790999513
Q 001559 641 -------EAVQLDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASY 691 (1053)
Q Consensus 641 -------~~~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~sy 691 (1053)
++......+++++.=--.++|+||.||+.+....-+...++.|+..|-+|.
T Consensus 64 ~l~ing~~I~~~~~~~p~~i~W~~~gvD~ViEcTG~f~t~~~~~~hl~~GakkViiSA 121 (169)
T d1hdgo1 64 SLIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITA 121 (169)
T ss_dssp EEEETTEEEEEECCSSGGGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESS
T ss_pred EEEECCEEEEEEECCCHHHCCCCCCCCCEEEEECCEECCCCCHHHHCCCCCCEEEEEC
T ss_conf 8999999999996799556994511997999844344335102431247873688721
|
| >d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.97 E-value=0.43 Score=21.08 Aligned_cols=28 Identities=21% Similarity=0.396 Sum_probs=21.7
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCC
Q ss_conf 8788499998552128989999962999
Q 001559 202 GICPLVFIFTGSGNVSLGAQEIFKLLPH 229 (1053)
Q Consensus 202 ~i~p~~v~i~G~G~vg~gA~~~~~~Lga 229 (1053)
.+.-.+|+|.|+|-+|.|..+.+...++
T Consensus 22 ~l~d~kiv~~GAGsAg~gia~ll~~~~~ 49 (294)
T d1pj3a1 22 PISEHKILFLGAGEAALGIANLIVMSMV 49 (294)
T ss_dssp CGGGCCEEEECCSHHHHHHHHHHHHHHH
T ss_pred CHHHCEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 8888289997865999999999999877
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.43 E-value=0.1 Score=25.25 Aligned_cols=33 Identities=12% Similarity=0.132 Sum_probs=28.0
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCEECCCC
Q ss_conf 884999985521289899999629992524799
Q 001559 204 CPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSR 236 (1053)
Q Consensus 204 ~p~~v~i~G~G~vg~gA~~~~~~Lga~~V~~~d 236 (1053)
.|.+|+|+|+|.+|+.|...+.++|++.|+..|
T Consensus 3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E 35 (196)
T d1gtea4 3 YSAKIALLGAGPASISCASFLARLGYSDITIFE 35 (196)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 999799999709999999999987998599998
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=88.30 E-value=0.46 Score=20.94 Aligned_cols=63 Identities=17% Similarity=0.218 Sum_probs=40.3
Q ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHH
Q ss_conf 99499993-74306999999993799984322223334436778627999988988899998619996289912799778
Q 001559 574 TSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
+|.|+|.| ++++|+++++.|++.| .+|.+++|+.++ ...|+.+...
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~G--------------------a~V~~~~~~~~~-------------~~~d~~~~~~ 47 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAG--------------------HQIVGIDIRDAE-------------VIADLSTAEG 47 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT--------------------CEEEEEESSSSS-------------EECCTTSHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHH-------------HHHHHCCHHH
T ss_conf 9899990888899999999999879--------------------989999798488-------------8877428887
Q ss_pred HH--------HHHCCCCEEEECCCC
Q ss_conf 99--------750166099944885
Q 001559 653 LC--------KCISQVEIVISLLPA 669 (1053)
Q Consensus 653 l~--------~~i~~~DvVI~~~p~ 669 (1053)
.. +.-...|+++++...
T Consensus 48 ~~~~~~~~~~~~~~~id~lv~~Ag~ 72 (257)
T d1fjha_ 48 RKQAIADVLAKCSKGMDGLVLCAGL 72 (257)
T ss_dssp HHHHHHHHHTTCTTCCSEEEECCCC
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf 9999999999838987499986877
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=88.23 E-value=0.49 Score=20.76 Aligned_cols=36 Identities=39% Similarity=0.430 Sum_probs=29.7
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 87899499993743069999999937999843222233344367786279999889
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY 626 (1053)
Q Consensus 571 ~~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~ 626 (1053)
....++|+|||+|..|-.+|..|++.| + .++|.+++
T Consensus 46 ~~~~k~VvIIGaGpAGl~aA~~l~~~G-~-------------------~v~l~E~~ 81 (233)
T d1djqa3 46 TKNKDSVLIVGAGPSGSEAARVLMESG-Y-------------------TVHLTDTA 81 (233)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHHTT-C-------------------EEEEECSS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHC-C-------------------CEEEEEEC
T ss_conf 667853899863489999999998733-5-------------------30268523
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=88.04 E-value=0.5 Score=20.69 Aligned_cols=87 Identities=9% Similarity=-0.031 Sum_probs=53.3
Q ss_pred CCEEEEECCCHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHH
Q ss_conf 99499993743069-99999993799984322223334436778627999988988899998619996289912799778
Q 001559 574 TSSVLIIGAGRVCR-PAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGIPNAEAVQLDVSDHKS 652 (1053)
Q Consensus 574 ~~~vliiGaG~vg~-~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~~~~~~~~~d~~d~~~ 652 (1053)
.+||-++|-|++|- ++|.+|.+.| ..|...|+.....-+..+... +.+... .+.
T Consensus 1 ~~~ihfiGIgG~GMs~LA~~L~~~G--------------------~~VsGSD~~~~~~t~~L~~~G-i~i~~g--h~~-- 55 (89)
T d1j6ua1 1 HMKIHFVGIGGIGMSAVALHEFSNG--------------------NDVYGSNIEETERTAYLRKLG-IPIFVP--HSA-- 55 (89)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT--------------------CEEEEECSSCCHHHHHHHHTT-CCEESS--CCT--
T ss_pred CCEEEEEEECHHHHHHHHHHHHHCC--------------------CEEEEEECCCCHHHHHHHHCC-CEEEEE--ECC--
T ss_conf 9689999577899999999999689--------------------969987277886689999779-868963--110--
Q ss_pred HHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEE
Q ss_conf 99750166099944885211799999887079099
Q 001559 653 LCKCISQVEIVISLLPASCHVMVANACIEFKKHLV 687 (1053)
Q Consensus 653 l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~v 687 (1053)
+.+.+.|+||-.....-..+...++.+.|.+++
T Consensus 56 --~~i~~~d~vV~SsAI~~~npel~~A~~~gIpv~ 88 (89)
T d1j6ua1 56 --DNWYDPDLVIKTPAVRDDNPEIVRARMERVPIE 88 (89)
T ss_dssp --TSCCCCSEEEECTTCCTTCHHHHHHHHTTCCEE
T ss_pred --CCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCC
T ss_conf --256799789982575998999999998599803
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=87.58 E-value=0.53 Score=20.51 Aligned_cols=31 Identities=19% Similarity=0.145 Sum_probs=25.7
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEECCC
Q ss_conf 8499998552128989999962999252479
Q 001559 205 PLVFIFTGSGNVSLGAQEIFKLLPHTFVEPS 235 (1053)
Q Consensus 205 p~~v~i~G~G~vg~gA~~~~~~Lga~~V~~~ 235 (1053)
..+++|+|+|-+++.++..+..+|+..|...
T Consensus 17 ~~~vlIlGaGGaarai~~aL~~~g~~~I~I~ 47 (167)
T d1npya1 17 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIY 47 (167)
T ss_dssp TSCEEEECSSTTHHHHHHHHHHTTCCCEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9969998987899999999997799889996
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=87.52 E-value=0.074 Score=26.09 Aligned_cols=26 Identities=23% Similarity=0.211 Sum_probs=21.7
Q ss_pred EEEEEC-CCHHHHHHHHHHHHCCCCEE
Q ss_conf 999985-52128989999962999252
Q 001559 207 VFIFTG-SGNVSLGAQEIFKLLPHTFV 232 (1053)
Q Consensus 207 ~v~i~G-~G~vg~gA~~~~~~Lga~~V 232 (1053)
.|+|.| +|-||.-|++.++.+|++.|
T Consensus 26 ~VLV~gaaGgVG~~avQlAk~~Ga~Vi 52 (167)
T d1tt7a2 26 SVLVTGATGGVGGIAVSMLNKRGYDVV 52 (167)
T ss_dssp CEEEESTTSHHHHHHHHHHHHHTCCEE
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEE
T ss_conf 899967865588999999987699659
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.41 E-value=0.54 Score=20.44 Aligned_cols=101 Identities=19% Similarity=0.157 Sum_probs=63.4
Q ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHC--CCCCEEEEECC
Q ss_conf 87899499993-7430699999999379998432222333443677862799998898889999861--99962899127
Q 001559 571 TKGTSSVLIIG-AGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEG--IPNAEAVQLDV 647 (1053)
Q Consensus 571 ~~~~~~vliiG-aG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~--~~~~~~~~~d~ 647 (1053)
..++++++|+| +.-+|+|++..|+..+ ..|++++.+-......... ........+..
T Consensus 26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~g--------------------aTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (171)
T d1edza1 26 RLYGKKCIVINRSEIVGRPLAALLANDG--------------------ATVYSVDVNNIQKFTRGESLKLNKHHVEDLGE 85 (171)
T ss_dssp TTTTCEEEEECCCTTTHHHHHHHHHTTS--------------------CEEEEECSSEEEEEESCCCSSCCCCEEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHCC--------------------CEEEEECCCCCCCCCCCCCEEEEEECCCCCCC
T ss_conf 7789889998885111799999998789--------------------97999445660003555432565402343121
Q ss_pred CCHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEECC
Q ss_conf 997789975016609994488521179999988707909995136
Q 001559 648 SDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYI 692 (1053)
Q Consensus 648 ~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~sy~ 692 (1053)
...+.+.+...++|+||+++|..-. .+-...++.|..++|....
T Consensus 86 ~~~~~lk~~~~~aDIvIsavG~p~~-~i~~d~ik~GavvIDvGi~ 129 (171)
T d1edza1 86 YSEDLLKKCSLDSDVVITGVPSENY-KFPTEYIKEGAVCINFACT 129 (171)
T ss_dssp CCHHHHHHHHHHCSEEEECCCCTTC-CBCTTTSCTTEEEEECSSS
T ss_pred CCHHHHHHCCCCCCEEEECCCCCCC-CCCHHHCCCCCEEEECCCC
T ss_conf 2366776416237899990488766-5576246167468602556
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.99 E-value=0.36 Score=21.65 Aligned_cols=33 Identities=24% Similarity=0.274 Sum_probs=28.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 99499993743069999999937999843222233344367786279999889
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY 626 (1053)
Q Consensus 574 ~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~ 626 (1053)
...|+|||+|..|-.+|.+|++.| . +|+|.+++
T Consensus 5 ~yDviViGaG~~Gl~~A~~La~~G-~-------------------~V~vlE~~ 37 (297)
T d2bcgg1 5 DYDVIVLGTGITECILSGLLSVDG-K-------------------KVLHIDKQ 37 (297)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHTT-C-------------------CEEEECSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC-C-------------------CEEEECCC
T ss_conf 678899896989999999999889-9-------------------89999489
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=86.68 E-value=0.6 Score=20.18 Aligned_cols=95 Identities=18% Similarity=0.185 Sum_probs=57.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC----HHHHHHHHHCCCCCEEEEECCC
Q ss_conf 899499993743069999999937999843222233344367786279999889----8889999861999628991279
Q 001559 573 GTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY----LKDAEEVIEGIPNAEAVQLDVS 648 (1053)
Q Consensus 573 ~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~----~~~a~~l~~~~~~~~~~~~d~~ 648 (1053)
..++|.|||+|--|++-|..|.+.| + +..++..|.|.-|. .++|++ +.+. .. +.
T Consensus 43 g~KkIaViGYGsQG~AhAlNLrDSG-~-------------~~~sgv~V~VGLr~gs~S~~kA~~--dGf~---v~--~~- 100 (226)
T d1qmga2 43 GIKQIGVIGWGSQAPAQAQNLKDSL-T-------------EAKSDVVVKIGLRKGSNSFAEARA--AGFS---EE--NG- 100 (226)
T ss_dssp TCSEEEEECCSSHHHHHHHHHHHHH-H-------------HTTCCCEEEEEECTTCSCHHHHHH--TTCC---GG--GT-
T ss_pred CCCEEEEEEECCHHHHHHHHCHHHC-C-------------CCCCCCEEEEEECCCCHHHHHHHH--CCCC---CC--CC-
T ss_conf 8877999974617799987574105-5-------------446783399996889765999997--4885---57--87-
Q ss_pred CHHHHHHHHCCCCEEEECCCCCCCHHHHHH---HHHHCCEEEEE
Q ss_conf 977899750166099944885211799999---88707909995
Q 001559 649 DHKSLCKCISQVEIVISLLPASCHVMVANA---CIEFKKHLVTA 689 (1053)
Q Consensus 649 d~~~l~~~i~~~DvVI~~~p~~~~~~v~~a---~i~~g~~~vD~ 689 (1053)
..-+..+.++.+|+|+.++|-..+..+-+. -++.|..+.-.
T Consensus 101 ~v~~v~EAv~~ADiVmiLlPDe~Q~~vy~~I~p~Lk~G~~L~Fa 144 (226)
T d1qmga2 101 TLGDMWETISGSDLVLLLISDSAQADNYEKVFSHMKPNSILGLS 144 (226)
T ss_dssp CEEEHHHHHHTCSEEEECSCHHHHHHHHHHHHHHSCTTCEEEES
T ss_pred CCCCHHHHHHHCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 63679999862887888366677999999999744898624321
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=86.61 E-value=0.6 Score=20.16 Aligned_cols=80 Identities=11% Similarity=0.076 Sum_probs=50.6
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCCCEECCCCCHH-HHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 87884999985521289899999629992524799134-32001345799865410787445221110002499987551
Q 001559 202 GICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSRLPE-LFGKAKDQHGGASKRIFQVYGCVVTSEDMVEHKDPTKGFDK 280 (1053)
Q Consensus 202 ~i~p~~v~i~G~G~vg~gA~~~~~~Lga~~V~~~dl~~-~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 280 (1053)
++.-.+|+|.|.|+||..+.+.+...|++ |.+.|... ..+ .... .+.....
T Consensus 24 ~L~gk~v~IqG~G~VG~~~A~~L~~~Gak-vvv~d~d~~~~~-------------------------~~~~-~g~~~~~- 75 (201)
T d1c1da1 24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQ-LLVADTDTERVA-------------------------HAVA-LGHTAVA- 75 (201)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHHHHH-------------------------HHHH-TTCEECC-
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEECCHHHHHH-------------------------HHHH-HCCCCCC-
T ss_conf 88999999989888999999999977998-999616077777-------------------------7776-2355567-
Q ss_pred CCCCCCCCCCCCCHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHH
Q ss_conf 01223956767202421059794999720136899964399989985
Q 001559 281 ADYYAHPEHYNPVFHKKIAPYASVIVNCMYWEQRFPRLLSTQQLQDL 327 (1053)
Q Consensus 281 ~~~~~~p~~y~~~f~~~~~~~~diiIn~~~~~~~~P~Lit~e~v~~l 327 (1053)
++ +-+.-.+||+|-|+.- ..||.+.++++
T Consensus 76 ------~~-------~~~~~~~DI~iPcA~~-----~~I~~~~a~~i 104 (201)
T d1c1da1 76 ------LE-------DVLSTPCDVFAPCAMG-----GVITTEVARTL 104 (201)
T ss_dssp ------GG-------GGGGCCCSEEEECSCS-----CCBCHHHHHHC
T ss_pred ------CC-------CCCCCCCEEEECCCCC-----CCCCHHHHHHH
T ss_conf ------43-------1234354266024545-----66668887301
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=86.59 E-value=0.6 Score=20.16 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=15.4
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCC
Q ss_conf 84999985521289899999629992
Q 001559 205 PLVFIFTGSGNVSLGAQEIFKLLPHT 230 (1053)
Q Consensus 205 p~~v~i~G~G~vg~gA~~~~~~Lga~ 230 (1053)
+.+++|+|+|.+|..+.+.+.++|.+
T Consensus 30 ~k~vvViGgG~iG~E~A~~l~~~g~~ 55 (123)
T d1nhpa2 30 VNNVVVIGSGYIGIEAAEAFAKAGKK 55 (123)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred CCEEEEECCHHHHHHHHHHHHCCCEE
T ss_conf 97899999718799999986104537
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=86.52 E-value=0.48 Score=20.80 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=13.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCCC
Q ss_conf 99998552128989999962999
Q 001559 207 VFIFTGSGNVSLGAQEIFKLLPH 229 (1053)
Q Consensus 207 ~v~i~G~G~vg~gA~~~~~~Lga 229 (1053)
+++|+|+|.+|..+...+++++.
T Consensus 4 rivIvGgG~~G~e~A~~l~~~~~ 26 (186)
T d1fcda1 4 KVVVVGGGTGGATAAKYIKLADP 26 (186)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCT
T ss_pred CEEEECCCHHHHHHHHHHHHCCC
T ss_conf 59999962999999999997198
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=86.06 E-value=0.64 Score=19.98 Aligned_cols=25 Identities=12% Similarity=0.159 Sum_probs=12.0
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCC
Q ss_conf 4999985521289899999629992
Q 001559 206 LVFIFTGSGNVSLGAQEIFKLLPHT 230 (1053)
Q Consensus 206 ~~v~i~G~G~vg~gA~~~~~~Lga~ 230 (1053)
..++|+|+|.+|....+.+..+|.+
T Consensus 31 ~~vvIIGgG~iG~E~A~~l~~~g~~ 55 (121)
T d1d7ya2 31 SRLLIVGGGVIGLELAATARTAGVH 55 (121)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred CEEEEECCCHHHHHHHHHHHCCCCE
T ss_conf 8599999633499988886066616
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=85.87 E-value=0.65 Score=19.92 Aligned_cols=40 Identities=20% Similarity=0.119 Sum_probs=32.9
Q ss_pred CCCCCCEEEEECC-C--HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHH
Q ss_conf 9878994999937-4--3069999999937999843222233344367786279999889888
Q 001559 570 GTKGTSSVLIIGA-G--RVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKD 629 (1053)
Q Consensus 570 ~~~~~~~vliiGa-G--~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~ 629 (1053)
.+.++|+++|.|+ | ++|+.+++.|++.| .+|.+.+|+...
T Consensus 4 ~~L~gK~alVTGass~~GIG~aiA~~la~~G--------------------a~Vvi~~~~~~~ 46 (297)
T d1d7oa_ 4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAG--------------------AEILVGTWVPAL 46 (297)
T ss_dssp CCCTTCEEEEECCSSSSSHHHHHHHHHHHTT--------------------CEEEEEEEHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCC--------------------CEEEEEECCHHH
T ss_conf 0789997999899999669999999999879--------------------989998476255
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=85.82 E-value=0.66 Score=19.90 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=16.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCC
Q ss_conf 994999937430699999999379
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFG 597 (1053)
Q Consensus 574 ~~~vliiGaG~vg~~ia~~L~~~g 597 (1053)
.++++|+|+|.+|--+|..|++.|
T Consensus 22 p~~v~IiGgG~ig~E~A~~l~~~G 45 (117)
T d1ebda2 22 PKSLVVIGGGYIGIELGTAYANFG 45 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCEEEEEEECCCC
T ss_conf 986999999865216443001255
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=85.69 E-value=0.67 Score=19.86 Aligned_cols=81 Identities=12% Similarity=0.133 Sum_probs=47.4
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC--HHHHHHHHHC-----CCCCEEEE
Q ss_conf 8994999937-43069999999937999843222233344367786279999889--8889999861-----99962899
Q 001559 573 GTSSVLIIGA-GRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY--LKDAEEVIEG-----IPNAEAVQ 644 (1053)
Q Consensus 573 ~~~~vliiGa-G~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~--~~~a~~l~~~-----~~~~~~~~ 644 (1053)
+.+||.|+|| |.+|+.++..|+..+-+ .......+.+.|.+ .++++.+.-. .+....+.
T Consensus 2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~-------------~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~ 68 (154)
T d5mdha1 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVF-------------GKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVI 68 (154)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTTTTT-------------CTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEE
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHC-------------CCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 9629999899977999999999977761-------------799851899953754234552032451104545656654
Q ss_pred ECCCCHHHHHHHHCCCCEEEECCCCC
Q ss_conf 12799778997501660999448852
Q 001559 645 LDVSDHKSLCKCISQVEIVISLLPAS 670 (1053)
Q Consensus 645 ~d~~d~~~l~~~i~~~DvVI~~~p~~ 670 (1053)
. . ....+.++++|+||-+.+..
T Consensus 69 ~--~--~~~~~~~~~~dvVVitag~~ 90 (154)
T d5mdha1 69 A--T--DKEEIAFKDLDVAILVGSMP 90 (154)
T ss_dssp E--E--SCHHHHTTTCSEEEECCSCC
T ss_pred C--C--CCCCCCCCCCEEEEEECCCC
T ss_conf 5--7--65212357851999825667
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=85.58 E-value=0.68 Score=19.83 Aligned_cols=79 Identities=10% Similarity=0.027 Sum_probs=45.2
Q ss_pred CCEEEEECCCHHHH--HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHH--HHHHHH-------CCCCCEE
Q ss_conf 99499993743069--999999937999843222233344367786279999889888--999986-------1999628
Q 001559 574 TSSVLIIGAGRVCR--PAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKD--AEEVIE-------GIPNAEA 642 (1053)
Q Consensus 574 ~~~vliiGaG~vg~--~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~--a~~l~~-------~~~~~~~ 642 (1053)
++||.|||+|.++. .++..+.....+ ...++.+.|.+.++ ++.+-. .. +...
T Consensus 1 k~KI~iIGaGs~~~~~~~~~l~~~~~~~----------------~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~-~~~~ 63 (169)
T d1s6ya1 1 RLKIATIGGGSSYTPELVEGLIKRYHEL----------------PVGELWLVDIPEGKEKLEIVGALAKRMVEKA-GVPI 63 (169)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTTC----------------CEEEEEEECCGGGHHHHHHHHHHHHHHHHHT-TCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHCCCC----------------CCCEEEEECCCCCHHHHHHHHHHHHHHHHHC-CCCC
T ss_conf 9689998987535799999999733006----------------8778999718865877799999988788765-9982
Q ss_pred EEECCCCHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf 991279977899750166099944885211
Q 001559 643 VQLDVSDHKSLCKCISQVEIVISLLPASCH 672 (1053)
Q Consensus 643 ~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~ 672 (1053)
.....+| ..+.++++|+||++.+.+-.
T Consensus 64 ~~~~~td---~~~al~gaDvVv~ta~~~~~ 90 (169)
T d1s6ya1 64 EIHLTLD---RRRALDGADFVTTQFRVGGL 90 (169)
T ss_dssp EEEEESC---HHHHHTTCSEEEECCCTTHH
T ss_pred EEEECCC---CHHHCCCCCEEEECCCCCCC
T ss_conf 1565277---14312789889986556898
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.13 E-value=0.35 Score=21.67 Aligned_cols=34 Identities=29% Similarity=0.308 Sum_probs=30.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHH
Q ss_conf 949999374306999999993799984322223334436778627999988988
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLK 628 (1053)
Q Consensus 575 ~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~ 628 (1053)
.+|+|+|+|-+|-.+|..|++.| ++|.|.++...
T Consensus 3 ~~V~IvGaGp~Gl~~A~~L~~~G--------------------~~v~vlE~~~~ 36 (292)
T d1k0ia1 3 TQVAIIGAGPSGLLLGQLLHKAG--------------------IDNVILERQTP 36 (292)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHT--------------------CCEEEECSSCH
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--------------------CCEEEEECCCC
T ss_conf 99999895989999999999789--------------------99999957999
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=84.68 E-value=0.57 Score=20.28 Aligned_cols=33 Identities=27% Similarity=0.492 Sum_probs=28.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 99499993743069999999937999843222233344367786279999889
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY 626 (1053)
Q Consensus 574 ~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~ 626 (1053)
...|+|||+|-+|-.+|.+|+++| .+|+|.++.
T Consensus 3 ~yDvvIIGaGi~Gls~A~~La~~G--------------------~~V~viE~~ 35 (281)
T d2gf3a1 3 HFDVIVVGAGSMGMAAGYQLAKQG--------------------VKTLLVDAF 35 (281)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTT--------------------CCEEEECSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--------------------CCEEEEECC
T ss_conf 189999994799999999999889--------------------958999678
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.64 E-value=0.33 Score=21.84 Aligned_cols=34 Identities=26% Similarity=0.140 Sum_probs=29.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCH
Q ss_conf 94999937430699999999379998432222333443677862799998898
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL 627 (1053)
Q Consensus 575 ~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~ 627 (1053)
.+|+|||+|-+|-.+|..|++.| . ..|+|.++..
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~G-i------------------~~V~V~Er~~ 35 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAG-I------------------GKVTLLESSS 35 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-C------------------SEEEEEESSS
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-C------------------CEEEEEECCC
T ss_conf 88999996989999999999589-9------------------8399996899
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=84.62 E-value=0.53 Score=20.50 Aligned_cols=27 Identities=33% Similarity=0.277 Sum_probs=17.9
Q ss_pred EEEEEE-CCCHHHHHHHHHHHHCCCCEE
Q ss_conf 499998-552128989999962999252
Q 001559 206 LVFIFT-GSGNVSLGAQEIFKLLPHTFV 232 (1053)
Q Consensus 206 ~~v~i~-G~G~vg~gA~~~~~~Lga~~V 232 (1053)
.++++. |+|.+|+-|++.++.+|++.|
T Consensus 31 ~vli~~ga~g~vG~~aiqlAk~~Ga~vI 58 (189)
T d1gu7a2 31 DWFIQNGGTSAVGKYASQIGKLLNFNSI 58 (189)
T ss_dssp CEEEESCTTSHHHHHHHHHHHHHTCEEE
T ss_pred EEEEEECCCCHHHHHHHHHHHHCCCEEE
T ss_conf 7999957884688999999852388289
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=84.61 E-value=0.49 Score=20.72 Aligned_cols=34 Identities=15% Similarity=0.044 Sum_probs=29.5
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCCCEECCCC
Q ss_conf 87884999985521289899999629992524799
Q 001559 202 GICPLVFIFTGSGNVSLGAQEIFKLLPHTFVEPSR 236 (1053)
Q Consensus 202 ~i~p~~v~i~G~G~vg~gA~~~~~~Lga~~V~~~d 236 (1053)
...|.+|+|+|+|.+|+.|...+.+.|++ |+.+|
T Consensus 40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~~-Vtl~E 73 (179)
T d1ps9a3 40 AVQKKNLAVVGAGPAGLAFAINAAARGHQ-VTLFD 73 (179)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHTTTCE-EEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHCCC-EEEEE
T ss_conf 77775899989659999999999863245-68983
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=84.53 E-value=0.75 Score=19.52 Aligned_cols=24 Identities=17% Similarity=0.454 Sum_probs=15.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCC
Q ss_conf 994999937430699999999379
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFG 597 (1053)
Q Consensus 574 ~~~vliiGaG~vg~~ia~~L~~~g 597 (1053)
.++|+|+|+|.+|--+|..|++.|
T Consensus 22 p~~v~IiGgG~iG~E~A~~l~~~g 45 (117)
T d1onfa2 22 SKKIGIVGSGYIAVELINVIKRLG 45 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC
T ss_conf 987999899657999999998606
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.22 E-value=0.53 Score=20.53 Aligned_cols=36 Identities=42% Similarity=0.460 Sum_probs=27.7
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 87899499993743069999999937999843222233344367786279999889
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY 626 (1053)
Q Consensus 571 ~~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~ 626 (1053)
..+..||+|||+|-.|-.+|..|++.| + +|+|.+++
T Consensus 2 ~~~~~kViVIGaG~aGL~aA~~L~~~G-~-------------------~V~VlEa~ 37 (449)
T d2dw4a2 2 TKKTGKVIIIGSGVSGLAAARQLQSFG-M-------------------DVTLLEAR 37 (449)
T ss_dssp SSCCCEEEEECCBHHHHHHHHHHHHTT-C-------------------EEEEECSS
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCC-C-------------------CEEEEECC
T ss_conf 999994899898889999999998589-9-------------------98999079
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=84.05 E-value=0.79 Score=19.39 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=12.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCC
Q ss_conf 4999985521289899999629992
Q 001559 206 LVFIFTGSGNVSLGAQEIFKLLPHT 230 (1053)
Q Consensus 206 ~~v~i~G~G~vg~gA~~~~~~Lga~ 230 (1053)
.+++|+|+|.+|..+...+.++|++
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~G~~ 46 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGLGAK 46 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred CEEEEECCCHHHHHHHHHHHCCCCE
T ss_conf 7899988972357778875426638
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=83.77 E-value=0.65 Score=19.92 Aligned_cols=30 Identities=17% Similarity=0.057 Sum_probs=22.6
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEECCCC
Q ss_conf 999985521289899999629992524799
Q 001559 207 VFIFTGSGNVSLGAQEIFKLLPHTFVEPSR 236 (1053)
Q Consensus 207 ~v~i~G~G~vg~gA~~~~~~Lga~~V~~~d 236 (1053)
+|+|+|+|.+|+.|...|.+.|...|++.|
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE 31 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEAGITDLLILE 31 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHTTCCCEEEEC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 899989838999999999867998389997
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.72 E-value=0.81 Score=19.30 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=13.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCC
Q ss_conf 994999937430699999999379
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFG 597 (1053)
Q Consensus 574 ~~~vliiGaG~vg~~ia~~L~~~g 597 (1053)
.++++|+|+|.+|--+|..|++.|
T Consensus 23 p~~~vIiG~G~ig~E~A~~l~~lG 46 (122)
T d1v59a2 23 PKRLTIIGGGIIGLEMGSVYSRLG 46 (122)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC
T ss_conf 983999987706889999998608
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=82.81 E-value=0.59 Score=20.21 Aligned_cols=121 Identities=12% Similarity=0.046 Sum_probs=68.7
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC----------HHHHHHHHHC----
Q ss_conf 87899499993743069999999937999843222233344367786279999889----------8889999861----
Q 001559 571 TKGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY----------LKDAEEVIEG---- 636 (1053)
Q Consensus 571 ~~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~----------~~~a~~l~~~---- 636 (1053)
+.+.++|.|-|.|.||+.++++|.+.| . .-+.|.|.+ .+...+....
T Consensus 33 ~l~g~~v~IQGfGnVG~~~a~~L~e~G-a------------------kvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~ 93 (255)
T d1bgva1 33 TLVGKTVALAGFGNVAWGAAKKLAELG-A------------------KAVTLSGPDGYIYDPEGITTEEKINYMLEMRAS 93 (255)
T ss_dssp CSTTCEEEECCSSHHHHHHHHHHHHHT-C------------------EEEEEEETTEEEECTTCSCSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC-C------------------EEEEEECCCCEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 978999999797889999999999859-8------------------589996588617658888878999999988641
Q ss_pred -CCCC-------EEEEECCCCHHHHHHHHCCCCEEEECCC-CCCCHHHHHHHHHHCCEEEEEECCCHHHHHHHH-HHHHC
Q ss_conf -9996-------2899127997789975016609994488-521179999988707909995136756999999-99975
Q 001559 637 -IPNA-------EAVQLDVSDHKSLCKCISQVEIVISLLP-ASCHVMVANACIEFKKHLVTASYIDDSMSKLDE-KAKGA 706 (1053)
Q Consensus 637 -~~~~-------~~~~~d~~d~~~l~~~i~~~DvVI~~~p-~~~~~~v~~a~i~~g~~~vD~sy~~~~~~~L~~-~Ak~~ 706 (1053)
...+ ....++. +++ +-.+||+++-|.- ...+...+......++.+|--.-+-|-+.+=++ ..+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~---~~~--~~~~~DiliPcA~~~~I~~~~a~~l~a~~ck~I~EgAN~p~t~ea~~~ll~~~ 168 (255)
T d1bgva1 94 GRNKVQDYADKFGVQFFPG---EKP--WGQKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEALRFLMQQP 168 (255)
T ss_dssp CCCCTHHHHHHHTCEEEET---CCG--GGSCCSEEECCSCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHHHHHHHHCT
T ss_pred CCCCHHHHHHHCCCEEECH---HHC--CCCCCCEEEECCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHC
T ss_conf 4761444443038502024---220--45664278312323425588887665247339954777876557899999736
Q ss_pred CCEEEECCC
Q ss_conf 986980688
Q 001559 707 GITILGEMG 715 (1053)
Q Consensus 707 Gv~ii~g~G 715 (1053)
|+.++++.=
T Consensus 169 gI~vvPD~l 177 (255)
T d1bgva1 169 NMVVAPSKA 177 (255)
T ss_dssp TCEEECHHH
T ss_pred CCEEEHHHH
T ss_conf 977865766
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.63 E-value=0.89 Score=19.05 Aligned_cols=28 Identities=14% Similarity=0.175 Sum_probs=23.5
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEECCCC
Q ss_conf 99985521289899999629992524799
Q 001559 208 FIFTGSGNVSLGAQEIFKLLPHTFVEPSR 236 (1053)
Q Consensus 208 v~i~G~G~vg~gA~~~~~~Lga~~V~~~d 236 (1053)
|+|+|+|.+|+.|...+.+.|.+ |++.|
T Consensus 2 ViVIGaG~aGL~aA~~L~~~G~~-V~VlE 29 (383)
T d2v5za1 2 VVVVGGGISGMAAAKLLHDSGLN-VVVLE 29 (383)
T ss_dssp EEEECCBHHHHHHHHHHHHTTCC-EEEEE
T ss_pred EEEECCCHHHHHHHHHHHHCCCC-EEEEE
T ss_conf 89989788999999999868997-89993
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=82.56 E-value=0.34 Score=21.79 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=21.2
Q ss_pred EEEEEC-CCHHHHHHHHHHHHCCCCEE
Q ss_conf 999985-52128989999962999252
Q 001559 207 VFIFTG-SGNVSLGAQEIFKLLPHTFV 232 (1053)
Q Consensus 207 ~v~i~G-~G~vg~gA~~~~~~Lga~~V 232 (1053)
.++|.| +|-||.-|++.++.+|++.|
T Consensus 34 ~vlV~gasGGVG~~aiQlAk~~Ga~Vi 60 (177)
T d1o89a2 34 EIVVTGASGGVGSTAVALLHKLGYQVV 60 (177)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCCEE
T ss_pred CEEEEECCCCCHHHHHHHHHHCCCCEE
T ss_conf 289997244406889999998599729
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.27 E-value=0.92 Score=18.93 Aligned_cols=106 Identities=12% Similarity=0.052 Sum_probs=58.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHC---------CCCCEE
Q ss_conf 78994999937430699999999379998432222333443677862799998898889999861---------999628
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEG---------IPNAEA 642 (1053)
Q Consensus 572 ~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~---------~~~~~~ 642 (1053)
...++|||+|.|.- .+++.+.+.... .++++++.+++-.+-..+. -+++++
T Consensus 77 ~~pk~vLiiGgG~G--~~~~~~l~~~~~------------------~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i 136 (285)
T d2o07a1 77 PNPRKVLIIGGGDG--GVLREVVKHPSV------------------ESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTL 136 (285)
T ss_dssp SSCCEEEEEECTTS--HHHHHHTTCTTC------------------CEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEE
T ss_pred CCCCEEEEECCCCH--HHHHHHHHCCCC------------------CEEEECCCCHHHHHHHHHHCHHHCCCCCCCCCEE
T ss_conf 67676898679964--999999975995------------------3136506778999999763665415557987569
Q ss_pred EEECCCCHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 9912799778997501660999448852117999998870790999513675699999999975986980
Q 001559 643 VQLDVSDHKSLCKCISQVEIVISLLPASCHVMVANACIEFKKHLVTASYIDDSMSKLDEKAKGAGITILG 712 (1053)
Q Consensus 643 ~~~d~~d~~~l~~~i~~~DvVI~~~p~~~~~~v~~a~i~~g~~~vD~sy~~~~~~~L~~~Ak~~Gv~ii~ 712 (1053)
+..|+ .+-+.+.-++.|+||.-.+....++ .++ |..+-...+.+.-+..|+.+++
T Consensus 137 ~~~Da--~~~l~~~~~~yDvIi~D~~~p~~~~---------~~L----~t~eF~~~~~~~L~~~Gi~v~q 191 (285)
T d2o07a1 137 HVGDG--FEFMKQNQDAFDVIITDSSDPMGPA---------ESL----FKESYYQLMKTALKEDGVLCCQ 191 (285)
T ss_dssp EESCH--HHHHHTCSSCEEEEEEECC------------------------CHHHHHHHHHEEEEEEEEEE
T ss_pred EECCH--HHHHHCCCCCCCEEEECCCCCCCCC---------CCC----CCHHHHHHHHHHCCCCCEEEEE
T ss_conf 98548--9997427877778999478988744---------011----4699999999855899759994
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=82.19 E-value=0.76 Score=19.49 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=28.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 99499993743069999999937999843222233344367786279999889
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY 626 (1053)
Q Consensus 574 ~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~ 626 (1053)
...|+|||+|..|..+|.++++.| .+|.|+++.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~a~~~G--------------------~kV~iiE~~ 34 (217)
T d1gesa1 2 HYDYIAIGGGSGGIASINRAAMYG--------------------QKCALIEAK 34 (217)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTT--------------------CCEEEEESS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--------------------CEEEEEECC
T ss_conf 678899897999999999999789--------------------979999616
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=81.01 E-value=0.97 Score=18.79 Aligned_cols=36 Identities=28% Similarity=0.169 Sum_probs=29.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCH
Q ss_conf 78994999937430699999999379998432222333443677862799998898
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYL 627 (1053)
Q Consensus 572 ~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~ 627 (1053)
....+|+|||||-.|-.++..|.+.| ..++|.+++.
T Consensus 5 ~~~~dV~IIGAG~sGl~~a~~L~~~G--------------------~~v~i~Ek~~ 40 (298)
T d1w4xa1 5 PEEVDVLVVGAGFSGLYALYRLRELG--------------------RSVHVIETAG 40 (298)
T ss_dssp CSEEEEEEECCSHHHHHHHHHHHHTT--------------------CCEEEECSSS
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC--------------------CCEEEEECCC
T ss_conf 98798999896599999999998689--------------------8989997689
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=80.94 E-value=1 Score=18.63 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=19.4
Q ss_pred EEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 99993-7430699999999379
Q 001559 577 VLIIG-AGRVCRPAAELLASFG 597 (1053)
Q Consensus 577 vliiG-aG~vg~~ia~~L~~~g 597 (1053)
|||.| +|.+|+.++..|.+.|
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g 23 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKG 23 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTT
T ss_pred EEEECCCCHHHHHHHHHHHHCC
T ss_conf 9995485399999999999679
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=80.78 E-value=1 Score=18.60 Aligned_cols=26 Identities=12% Similarity=0.091 Sum_probs=14.4
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCC
Q ss_conf 84999985521289899999629992
Q 001559 205 PLVFIFTGSGNVSLGAQEIFKLLPHT 230 (1053)
Q Consensus 205 p~~v~i~G~G~vg~gA~~~~~~Lga~ 230 (1053)
+.+++|+|+|.+|..+.+.+..+|.+
T Consensus 35 ~k~v~VIGgG~iG~E~A~~l~~~g~~ 60 (133)
T d1q1ra2 35 DNRLVVIGGGYIGLEVAATAIKANMH 60 (133)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCC
T ss_conf 88899999833789998998762721
|
| >d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Pseudomonas aeruginosa [TaxId: 287]
Probab=80.61 E-value=1.1 Score=18.56 Aligned_cols=102 Identities=16% Similarity=0.195 Sum_probs=62.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHH------------HHHCCC-CC-
Q ss_conf 9499993743069999999937999843222233344367786279999889888999------------986199-96-
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEE------------VIEGIP-NA- 640 (1053)
Q Consensus 575 ~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~------------l~~~~~-~~- 640 (1053)
..|.|+|-|+.|..++..+.+.+.. +.+...++-+.+.+.. +...+. ..
T Consensus 2 a~IkViGvGGaG~n~v~~~~~~~~~-----------------~v~~iainTD~~~L~~~~~~~ki~iG~~~~~g~G~gg~ 64 (198)
T d1ofua1 2 AVIKVIGVGGGGGNAVNHMAKNNVE-----------------GVEFICANTDAQALKNIAARTVLQLGPGVTKGLGAGAN 64 (198)
T ss_dssp CCEEEEEEHHHHHHHHHHHHHTTCC-----------------SEEEEEEESBTGGGSSCSCSEEEECCHHHHTTBCCCSC
T ss_pred CEEEEEEECCHHHHHHHHHHHCCCC-----------------CEEEEEEECCHHHHHCCCCCCEECCCCCCCCCCCCCCC
T ss_conf 6599998794189999999981999-----------------75899993759988268722255266655647787889
Q ss_pred -EE-EEECCCCHHHHHHHHCCCCEEEECCCCC--C----CHHHHHHHHHHCCEEEEEECCC
Q ss_conf -28-9912799778997501660999448852--1----1799999887079099951367
Q 001559 641 -EA-VQLDVSDHKSLCKCISQVEIVISLLPAS--C----HVMVANACIEFKKHLVTASYID 693 (1053)
Q Consensus 641 -~~-~~~d~~d~~~l~~~i~~~DvVI~~~p~~--~----~~~v~~a~i~~g~~~vD~sy~~ 693 (1053)
+. ...-..+.+.+.+.++++|+|+-+.+.+ + .+.+++.|-+.|..++-+...|
T Consensus 65 p~~g~~aa~e~~~~I~~~l~~~d~vfi~AGlGGGTGtgaapviA~~ake~g~lvvaivtlP 125 (198)
T d1ofua1 65 PEVGRQAALEDRERISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAKEMGILTVAVVTRP 125 (198)
T ss_dssp HHHHHHHHHHTHHHHHHHHTTCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 4889988999899999984789869999617998643089999999998599779999533
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=80.46 E-value=1.1 Score=18.53 Aligned_cols=76 Identities=16% Similarity=0.109 Sum_probs=46.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCC---------CCCEE
Q ss_conf 789949999374306999999993799984322223334436778627999988988899998619---------99628
Q 001559 572 KGTSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEEVIEGI---------PNAEA 642 (1053)
Q Consensus 572 ~~~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~l~~~~---------~~~~~ 642 (1053)
...++|||||.|.-+ +++.+.+...+ .+|.+++.+++-.+-....+ +++++
T Consensus 105 ~~pk~VLIiGgG~G~--~~rellk~~~v------------------~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i 164 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGG--ILREVLKHESV------------------EKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDL 164 (312)
T ss_dssp SSCCEEEEESCTTSH--HHHHHTTCTTC------------------CEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEE
T ss_pred CCCCEEEEECCCCHH--HHHHHHHCCCC------------------CEEEEECCCHHHHHHHHHHCHHHCCCCCCCCEEE
T ss_conf 987869994798469--99999973994------------------3389972568999998763522114557997389
Q ss_pred EEECCCCHHHHHHHHCCCCEEEECCCC
Q ss_conf 991279977899750166099944885
Q 001559 643 VQLDVSDHKSLCKCISQVEIVISLLPA 669 (1053)
Q Consensus 643 ~~~d~~d~~~l~~~i~~~DvVI~~~p~ 669 (1053)
+..|+ .+-+.+.-..+|+||.-.+.
T Consensus 165 ~i~Da--~~~l~~~~~~yDvII~D~~d 189 (312)
T d2b2ca1 165 FCGDG--FEFLKNHKNEFDVIITDSSD 189 (312)
T ss_dssp ECSCH--HHHHHHCTTCEEEEEECCC-
T ss_pred EECHH--HHHHHHCCCCCCEEEECCCC
T ss_conf 97159--99997378877789992788
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=80.25 E-value=0.74 Score=19.56 Aligned_cols=39 Identities=33% Similarity=0.227 Sum_probs=31.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHH
Q ss_conf 99499993743069999999937999843222233344367786279999889888999
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLYLKDAEE 632 (1053)
Q Consensus 574 ~~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~~~~a~~ 632 (1053)
...|+|||+|..|-.+|..|++.| .+|.|.+++..-..+
T Consensus 4 ~~DViIIGaG~aGl~aA~~la~~G--------------------~~V~vlEk~~~~G~k 42 (253)
T d2gqfa1 4 YSENIIIGAGAAGLFCAAQLAKLG--------------------KSVTVFDNGKKIGRK 42 (253)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTT--------------------CCEEEECSSSSSCHH
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--------------------CCEEEEECCCCCCCC
T ss_conf 872999874899999999999789--------------------968999648989974
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=80.16 E-value=1.1 Score=18.47 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=24.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 9499993743069999999937999843222233344367786279999889
Q 001559 575 SSVLIIGAGRVCRPAAELLASFGSPSHQMQKTCMETDFEWQNDIRVLVASLY 626 (1053)
Q Consensus 575 ~~vliiGaG~vg~~ia~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~v~~r~ 626 (1053)
|||+|||+|.+|-.+|..|.+.+. +.+|++.+|.
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~~------------------~~~V~v~~~~ 34 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLHP------------------DAEIQWYEKG 34 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCT------------------TSEEEEEESS
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC------------------CCEEEEEECC
T ss_conf 979999972999999999985599------------------9859999478
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.16 E-value=1.1 Score=18.46 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=15.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCC
Q ss_conf 994999937430699999999379
Q 001559 574 TSSVLIIGAGRVCRPAAELLASFG 597 (1053)
Q Consensus 574 ~~~vliiGaG~vg~~ia~~L~~~g 597 (1053)
.++++|+|+|.+|--+|..|++.|
T Consensus 22 pk~vvIvGgG~iG~E~A~~l~~~G 45 (125)
T d3grsa2 22 PGRSVIVGAGYIAVEMAGILSALG 45 (125)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCHHHHHHHHHCCC
T ss_conf 987999868832899999875178
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=80.14 E-value=1.1 Score=18.46 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=12.4
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCC
Q ss_conf 84999985521289899999629992
Q 001559 205 PLVFIFTGSGNVSLGAQEIFKLLPHT 230 (1053)
Q Consensus 205 p~~v~i~G~G~vg~gA~~~~~~Lga~ 230 (1053)
|.+++|+|+|..|.-..+++.+||++
T Consensus 20 P~~vvIIGgG~iG~E~A~~l~~lG~~ 45 (122)
T d1h6va2 20 PGKTLVVGASYVALECAGFLAGIGLD 45 (122)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCC
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCE
T ss_conf 98099998872189999998612976
|