Citrus Sinensis ID: 001565

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050--
Protein Sequence
MSLLSRFFYKRPPDGLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGFLQLLSPLNPFPSQLRYLQYVARRNITPEWPPPERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTLRHYRQADCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMFNTAFIRSNILMLNSENLDILWDSKERYPKGFRAEVLFGDVESISPPRAPTSILNGEEKGGLPIEAFSRVRELFSGVEWVDNSDALWLLKQLSVFSDVKEFTRMQDRGSSYTSPVDSEEENNASSAGDSLDEAFDVFPEPLVDTKKLLLSNAGDSVTSLSKNEGPHDVILVSEPIDQVSNETVLSSLHQQSLVLTEGNPPCFPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPPPGVKSSSVPPPPLPSVGKGKVTSGPASHGRGRLNSGVSHAPKKASLKPLHWVKVTRAMQGSLWADSQKQENHSRAPEIDISELESLFSAASDGSGTNKTGVRRGSNINKPEKVQLVELRRAYNCEIMLTKIKIPLPDMMNAVLALDSSALDIDQVENLIKFCPTKEEMELLKNYAGDKVMLGKCEQVPG
Secondary Structure (PSIPRED)
ccHHHHHHHcccccccEEEEccEEEEEcccccccccccHHHHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHccccEEcccccccccccccHHHHHHHHHHHccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccHHHHHHcccccccccHHHHHHHHHHcccccccccccccccccEEEEEcccccccccccccEEEEccccccccccccccEEEEccccccEEHHcccccccEEEEcccccccccEEEEEEEcccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccEEEccccHHHHHHHHHccccccHHHHHHHHHHcccccccHHHHHHHHHHcccHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHcccccccEEEEcccEEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccccccHcccHHHcccEEcccccHHcccccccHHHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcHHHHHHcccccccccHHHHHHHHHHHHccccccccccccEEEEEEEEEEccccccccccccEEEEEccccccccccccEEEEEcccccccEEEEEEcccEEEEEcccccEcccEEEEEEEcccccHHHcEEEEEEEEEEEccccEEEEcHHHHHHHHcHHHHcccccEEEEEEEcccccccccccccccccccccccHHHHHHHHHHHHccccHcccccHHHHHccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccHHHHHcccccccccccccHHHHHHHHHHccccccccccccccccccccccHEEEccHHHccccHEEEEEccccHHHHHHHHHHccccHccHHHHHHHHHccccHHHHHHHHcccccHHHccccccccc
Coil and Loop (DISEMBL)
msllsrffykrppdglLEFIERVYVfdscfstevvpdgMYQLYLHEILTELheefpdsaflafnfregekqSEFAEILCEYdvtvldyprqyegcpllpmSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKlhsgerrtleivhreapkgflqllsplnpfpsqlRYLQYVARrnitpewppperalsLDCVILRaipnfdaqngcrpiirifgrnfrskgglstQMIFSMSKKRKTLRHYRQADCDVIKIDIQCLVQGDVVLEcvhldldpeREVMMFRVMFNTAFIRSNILmlnsenldilwdskerypkgfraevlfgdvesisppraptsilngeekgglpiEAFSRVRELFsgvewvdnsDALWLLKQLSVFSDVKEFTrmqdrgssytspvdseeennassagdsldeafdvfpeplvdTKKLLlsnagdsvtslsknegphdvilvsepidqvsneTVLSSLHQQSlvltegnppcfppspsspqsiaptpplpphsspasasgviplpmsapppspppppppplpsstnnsflsppppppplpsstnnnfispppppppppcfsskdfspmpsetsrgpppppppppppafsgkdssavrstssivppppppppppsfygkgsstmpstssigppppppppppsfsgkgssslpstssigspppppppppsfsgrssivpsttskgppppppppppppaagpnsskallsapphpsptsrssqpsfhppppppppppppppsslgkitnklqlaptsqpavpppppplpkscstsipmapppppsigckpinaprppppppplgparsgavlpppppapklptapsppsrgvmpspppppgvksssvpppplpsvgkgkvtsgpashgrgrlnsgvshapkkaslkplhWVKVTRAMQgslwadsqkqenhsrapeidiSELESLFsaasdgsgtnktgvrrgsninkpekVQLVELRRAYNCEIMLtkikiplpdMMNAVLAldssaldidQVENLIKFCPTKEEMELLKNyagdkvmlgkceqvpg
Flexible Loop (DISEMBL)
msllsrffykrppdgLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGFLQLLSPLNPFPSQLRYLQYVARRNitpewppperALSLDCVILRAIpnfdaqngcrPIIRIFGrnfrskgglstQMIFSMSKKRKTLRHYRQADCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMFNTAFIRSNILMLNSENLDILWDSKERYPKGFRAevlfgdvesisppraptsilngeekggLPIEAFSRVRELFSGVEWVDNSDALWLLKQLSVFSDVKEFTRMqdrgssytspvdseeenNASSAGDSLDEAFDVFPEPLVDTKKLLLSNAGDsvtslsknegphDVILVSEPIDQVSNETVLSSLHQQSLVLTEGNPPCFPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPPPGVKSSSVPPPPLPSVGKGKvtsgpashgrgrlnsgvshapkkaslkplhWVKVTRAMQGSLWADSQKQENHSRAPEIDISELESLFsaasdgsgtnktgvrrgsninkpekvqlVELRRAYNCEIMLTKIKIPLPDMMNAVLALDSSALDIDQVENLIKFCPTKEEMELLKnyagdkvmlgkceqvpg
Low Complexity Region (SEG)
MSLLSRFFYKRPPDGLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPllafllasllIFRKLHSGERRTLEIVHREAPKGFLQLLSPLNPFPSQLRYLQYVARRNITPEWPPPERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTLRHYRQADCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMFNTAFIRSNILMLNSENLDILWDSKERYPKGFRAEVLFGDVESISPPRAPTSILNGEEKGGLPIEAFSRVRELFSGVEWVDNSDALWLLKQLSVFSDVKEFTRMQDRGSSYTSPVDSEEENNASSAGDSLDEAFDVFPEPLVDTKKLLLSNAGDSVTSLSKNEGPHDVILVSEPIDQVSNETvlsslhqqslvlTEGNppcfppspsspqsiaptpplpphsspasasGVIplpmsapppspppppppplpsstnnsflsppppppplpsstnnnfispppppppppcfsskdfspMPSETSRGpppppppppppAFSGKDSSAVRSTSSIVppppppppppSFYgkgsstmpstssigppppppppppsfsgkgssslpstssigspppppppppsfsgrssIVPSTTSKgppppppppppppaagpNSSKALLSAPPHPSPTSRSSQPSFHppppppppppppppSSLGKITNKLQLAptsqpavpppppplpKSCSTSIPMApppppSIGCKpinaprppppppplgpARSGAVlpppppapklptapsppsrgvmpspppppgvksssvpppplpsvgkgkvTSGPASHGRGRLNSGVSHAPKKASLKPLHWVKVTRAMQGSLWADSQKQENHSRAPEIDISELESLFSAASDGSGTNKTGVRRGSNINKPEKVQLVELRRAYNCEIMLTKIKIPLPDMMNAVLALDSSALDIDQVENLIKFCPTKEEMELLKNYAGDKVMLGKCEQVPG
Disordered region (IsUnstruct)
****SRFFYKRPPDGLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGFLQLLSPLNPFPSQLRYLQYVARRNITPEWPPPERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTLRHYRQADCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMFNTAFIRSNILMLNSENLDILWDSKERYPKGFRAEVLFGDVE******************GLPIEAFSRVRELFSGVEWVDNSDALWLLKQLSVFSDVKEF***********************************F***LV****L*********************ILV**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************LHWVKVTRAMQG*L**************************************************VQLVELRRAYNCEIMLTKIKIPLPDMMNAVLALDSSALDIDQVENLIKFCPTKEEMELLKNYAGDKVMLG*******
Disordered Region (DISOPRED)
*SLLSRFFYKRPPDGLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGFLQLLSPLNPFPSQLRYLQYVARRNITPEWPPPERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTLRHYRQADCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMFNTAFIRSNILMLNSENLDILWDSKERYPKGFRAEVLFGDVESISP***************LPIEAFSRVRELFSGVEWVDNSDALWLLK********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************HWVKVTRAMQGSLWADSQKQENHSRAPEIDISELES*******************************ELRRAYNCEIMLTKIKIPLPDMMNAVLALDSSALDIDQVENLIKFCPTKEEMELLKNYAGDKVMLGKCEQ***
Disordered Region (DISEMBL)
MSLLSRFFYKRPPDGLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGFLQLLSPLNPFPSQLRYLQYVARRNITPEWPPPERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMS********YRQADCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMFNTAFIRSNILMLNSENLDILWDSKERYPKGFRAEVLFGDVESISPPRAPTSILNGEEKGGLPIEAFSRVRELFSGVEWVDNSDALWLLKQLSVFSDVKEFTR************************DSLDEAFDVFPEPLVDTKKLLLSNAGDSVTSLSKNEGPHDVILVSEPIDQVSNETVLSSLHQQSLVLTEGNPPC*************************ASGVIPLPM*******************************PLPSSTNNNFISPPPPPPPPPCFSSKDF*******************************************PPPPPSFYGK***********************************************************************************************************************PSSLGKITNKLQLA******************STSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPK**************************************************RLNSGVSHAPKKASLKPLHWVKVTRAMQGSLW************PEIDISELESLFSAA**********VRRGSNINKPEKVQLVELRRAYNCEIMLTKIKIPLPDMMNAVLALDSSALDIDQVENLIKFCPTKEEMELLKNYAGDKVMLGKCEQVPG
Disordered Region (DISPRO)
MSLLSRFFYKRPPDGLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGFLQLLSPLNPFPSQLRYLQYVARRNITPEWPPPERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTLRHYRQADCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMFNTAFIRSNILMLNSENLDILWDSKERYPKGFRAEVLFGDVE***********LNGEEKGGLPIEAFSRVRELFSGVEWVDNSDALWLLKQLSVFSD*******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************ASLKPLHWVKVTRAMQGSLWADSQK*******PEID*SE*ESLFSA********************PEKVQLVELRRAYNCEIMLTKIKIPLPDMMNAVLALDSSALDIDQVENLIKFCPTKEEMELLKNYAGDKVMLGKCE****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLLSRFFYKRPPDGLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGFLQLLSPLNPFPSQLRYLQYVARRNITPEWPPPERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTLRHYRQADCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMFNTAFIRSNILMLNSENLDILWDSKERYPKGFRAEVLFGDVESISPPRAPTSILNGEEKGGLPIEAFSRVRELFSGVEWVDNSDALWLLKQLSVFSDVKEFTRMQDRGSSYTSPVDSEEENNASSAGDSLDEAFDVFPEPLVDTKKLLLSNAGDSVTSLSKNEGPHDVILVSEPIDQVSNETVLSSLHQQSLVLTEGNPPCFPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPPPGVKSSSVPPPPLPSVGKGKVTSGPASHGRGRLNSGVSHAPKKASLKPLHWVKVTRAMQGSLWADSQKQENHSRAPEIDISELESLFSAASDGSGTNKTGVRRGSNINKPEKVQLVELRRAYNCEIMLTKIKIPLPDMMNAVLALDSSALDIDQVENLIKFCPTKEEMELLKNYAGDKVMLGKCEQVPG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1052	2.2.26 [Sep-21-2011]
Q9C6S1	1230	Formin-like protein 14 OS	yes	no	0.430	0.368	0.755	0.0
Q7G6K7	1234	Formin-like protein 3 OS=	yes	no	0.376	0.320	0.658	1e-168
Q6ZCX3	1364	Formin-like protein 6 OS=	yes	no	0.367	0.283	0.561	1e-141
Q9FLQ7	1649	Formin-like protein 20 OS	no	no	0.337	0.215	0.547	1e-129
Q9LVN1	1266	Formin-like protein 13 OS	no	no	0.372	0.309	0.517	1e-128
Q9SK28	1111	Formin-like protein 18 OS	no	no	0.345	0.326	0.512	1e-117
Q84ZL0	1627	Formin-like protein 5 OS=	yes	no	0.329	0.213	0.489	1e-106
Q7XWS7	1669	Formin-like protein 12 OS	yes	no	0.355	0.224	0.480	1e-104
Q6K8Z4	1385	Formin-like protein 7 OS=	no	no	0.319	0.242	0.395	2e-82
Q9LH02	495	Formin-like protein 17 OS	no	no	0.138	0.294	0.612	1e-49

>sp|Q9C6S1|FH14_ARATH Formin-like protein 14 OS=Arabidopsis thaliana GN=FH14 PE=3 SV=3

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/462 (75%), Positives = 398/462 (86%), Gaps = 9/462 (1%)

Query: 1   MSLLSRFFYKRPPDGLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAF 60
           MSLLSRFFYKRPPDGLLEF +RVYVFDSCF TEV+ D +YQ++LHE++ +LHEEFP+S+F
Sbjct: 1   MSLLSRFFYKRPPDGLLEFADRVYVFDSCFCTEVLADSLYQIFLHEVINDLHEEFPESSF 60

Query: 61  LAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQ 120
           LAFNFREGEK+S FAE LCEYDVTVL+YPRQYEGCP+LP+SLIQHFLRVCE WL  G+ Q
Sbjct: 61  LAFNFREGEKKSVFAETLCEYDVTVLEYPRQYEGCPMLPLSLIQHFLRVCESWLARGNRQ 120

Query: 121 NVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGFLQLLSPLNPFPSQ 180
           +VILLH ERGGWPLLAF+LAS LIFRK+HSGERRTLEIVHREAPKG LQLLSPLNPFPSQ
Sbjct: 121 DVILLHCERGGWPLLAFILASFLIFRKVHSGERRTLEIVHREAPKGLLQLLSPLNPFPSQ 180

Query: 181 LRYLQYVARRNITPEWPPPERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLS 240
           LRYLQYVARRNI  EWPPPERALSLDCVI+R IPNFD+Q+GCRPIIRIFGRN+ SK GLS
Sbjct: 181 LRYLQYVARRNINSEWPPPERALSLDCVIIRGIPNFDSQHGCRPIIRIFGRNYSSKSGLS 240

Query: 241 TQMIFSMSKKRKTLRHYRQADCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMFN 300
           T+M++SMS K+K LRHYRQA+CDVIKIDIQC VQGDVVLECVH+DLDPEREVMMFRVMFN
Sbjct: 241 TEMVYSMSDKKKPLRHYRQAECDVIKIDIQCWVQGDVVLECVHMDLDPEREVMMFRVMFN 300

Query: 301 TAFIRSNILMLNSENLDILWDSKERYPKGFRAEVLFGDVESISPPRAPTSILNGEEKGGL 360
           TAFIRSNILMLNS+NLDILW++K+ YPKGFRAEVLFG+VE+ SP + PT I+NG+E GGL
Sbjct: 301 TAFIRSNILMLNSDNLDILWEAKDHYPKGFRAEVLFGEVENASPQKVPTPIVNGDETGGL 360

Query: 361 PIEAFSRVRELFSGVEWVDNSD--ALWLLKQLSVFSDVKEFTRMQDRGSSYTSPVDSEEE 418
           PIEAFSRV+ELFSGV+  +N D  ALWLLKQL+  +D KEFTR + +GS Y +  DSEEE
Sbjct: 361 PIEAFSRVQELFSGVDLAENGDDAALWLLKQLAAINDAKEFTRFRHKGSFYFNSPDSEEE 420

Query: 419 NNASSAGDSLDEAFDVFPEPLV-------DTKKLLLSNAGDS 453
            N SSA DS DE F+    P +       DT  + LS A +S
Sbjct: 421 TNTSSAADSSDEGFEAIQRPRIHIPFDNDDTDDITLSVAHES 462

Arabidopsis thaliana (taxid: 3702)

>sp|Q7G6K7|FH3_ORYSJ Formin-like protein 3 OS=Oryza sativa subsp. japonica GN=FH3 PE=2 SV=2

 Score =  593 bits (1530), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 272/413 (65%), Positives = 336/413 (81%), Gaps = 17/413 (4%)

Query: 22  RVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEY 81
           RV VFDSCF TEV+P GMY +YL  ILT+LHEE   S+FL  NFR+G+K+S+ A++L EY
Sbjct: 36  RVSVFDSCFCTEVLPHGMYPVYLTGILTDLHEEHSQSSFLGINFRDGDKRSQLADVLREY 95

Query: 82  DVTVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLAS 141
           +V V+DYPR +EGCP+LP+SLIQHFLRVCEHWL  G++QN+ILLH ERGGWP LAF+L+ 
Sbjct: 96  NVPVIDYPRHFEGCPVLPLSLIQHFLRVCEHWLSTGNNQNIILLHCERGGWPSLAFMLSC 155

Query: 142 LLIFRKLHSGERRTLEIVHREAPKGFLQLLSPLNPFPSQLRYLQYVARRNITPEWPPPER 201
           LLIF+KL S E +TL++++REAPKGFLQL S LNP PSQLRYLQYVARRNI+PEWPP ER
Sbjct: 156 LLIFKKLQSAEHKTLDLIYREAPKGFLQLFSALNPMPSQLRYLQYVARRNISPEWPPMER 215

Query: 202 ALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTLRHYRQAD 261
           ALS DC+ILRAIP+FD+ NGCRP++RIFGRN   K   ++ MIFSM KK KTLRHYRQ D
Sbjct: 216 ALSFDCLILRAIPSFDSDNGCRPLVRIFGRNIIGKNASTSNMIFSMPKK-KTLRHYRQED 274

Query: 262 CDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMFNTAFIRSNILMLNSENLDILWD 321
           CDVIKIDIQC VQGDVVLECVHLDLDPE+EVMMFR+MFNTAFIRSN+LMLNS+++DI+W 
Sbjct: 275 CDVIKIDIQCPVQGDVVLECVHLDLDPEKEVMMFRIMFNTAFIRSNVLMLNSDDIDIVWG 334

Query: 322 SKERYPKGFRAEVLFGDVESISPPRAPTSILNGEEKGGLPIEAFSRVRELFSGVEWVDNS 381
           SK++YP+ FRAE+LF ++  ISP R PT+ LNG+ KGGLPIEAFS V+ELF+GV+W+++S
Sbjct: 335 SKDQYPRNFRAEMLFCELGGISPARPPTATLNGDMKGGLPIEAFSAVQELFNGVDWMESS 394

Query: 382 D--ALWLLKQLS-----------VFSDVKEFTRMQDRGSS---YTSPVDSEEE 418
           D  A WLLK+ S           + SD++E ++ Q +        SP+DS+EE
Sbjct: 395 DNAAFWLLKEFSANSLQEKFQKLILSDMEELSKFQAKVGLQIPLMSPLDSDEE 447

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6ZCX3|FH6_ORYSJ Formin-like protein 6 OS=Oryza sativa subsp. japonica GN=FH6 PE=2 SV=2

 Score =  501 bits (1291), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 219/390 (56%), Positives = 299/390 (76%), Gaps = 3/390 (0%)

Query: 1   MSLLSRFFYKRPPDGLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAF 60
           M+L  +FFY++PPDGLLE  ERVYVFDSCF+T+V  D  YQ Y+ +I+ +L   F D++F
Sbjct: 1   MALFRKFFYRKPPDGLLEITERVYVFDSCFTTDVFNDDKYQDYIGDIVAQLQCHFADASF 60

Query: 61  LAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQ 120
           + FNFREGE QS  A IL  Y++ V+DYPRQYEGCPL+ + +I HFLR  E WL L   Q
Sbjct: 61  MVFNFREGESQSLLANILSSYEMVVMDYPRQYEGCPLVTIEMIHHFLRSGESWLSLS-QQ 119

Query: 121 NVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGFLQLLSPLNPFPSQ 180
           NV+++H ERGGW +LAF+LA LL++RK + GE+RTLE+++R+AP+  +QLLSPLNP PSQ
Sbjct: 120 NVLIMHCERGGWAVLAFMLAGLLLYRKQYIGEQRTLEMIYRQAPRELIQLLSPLNPIPSQ 179

Query: 181 LRYLQYVARRNITPEWPPPERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLS 240
           +RYL Y++RRN++  WPP +RAL+LDCVILR IP F+ + GCRPI RI+G++       +
Sbjct: 180 IRYLHYISRRNVSAVWPPGDRALTLDCVILRNIPGFNGEGGCRPIFRIYGKDPLLATSNT 239

Query: 241 TQMIFSMSKKRKTLRHYRQADCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMFN 300
            +++FS  K+ K +R Y++ DC++IKIDI C +QGDVVLEC+ LD D +RE M+FRVMFN
Sbjct: 240 PKVLFSTPKRSKYVRLYKKVDCELIKIDIHCHIQGDVVLECISLDADQQREEMIFRVMFN 299

Query: 301 TAFIRSNILMLNSENLDILWDSKERYPKGFRAEVLFGDVESISPPRAPTSILNGEEKGGL 360
           TAFIRSNILMLN + +DILWD+K+R+PK FRAEVLF +++S++   +   +    EK GL
Sbjct: 300 TAFIRSNILMLNRDEIDILWDAKDRFPKEFRAEVLFSEMDSVNQLDS-MEVGGIGEKEGL 358

Query: 361 PIEAFSRVRELFSGVEWVD-NSDALWLLKQ 389
           P+EAF++V+E+FS V+W+D  +DA  LL Q
Sbjct: 359 PVEAFAKVQEMFSNVDWLDPTADAAALLFQ 388

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FLQ7|FH20_ARATH Formin-like protein 20 OS=Arabidopsis thaliana GN=FH20 PE=2 SV=3

 Score =  463 bits (1191), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 195/356 (54%), Positives = 278/356 (78%), Gaps = 1/356 (0%)

Query: 1   MSLLSRFFYKRPPDGLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAF 60
           M+L  RFFYK+PPD LLE  ERVYVFD CFS++V+ +  Y++YL  I+ +L + FP+++F
Sbjct: 1   MALFRRFFYKKPPDRLLEISERVYVFDCCFSSDVMGEDEYKVYLGGIVAQLQDHFPEASF 60

Query: 61  LAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQ 120
           + FNFREGE++S+ +++L +YD+TV+DYPRQYE CPLLP+ +I HFLR  E WL L   Q
Sbjct: 61  MVFNFREGEQRSQISDVLSQYDMTVMDYPRQYESCPLLPLEMIHHFLRSSESWLSLEGQQ 120

Query: 121 NVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGFLQLLSPLNPFPSQ 180
           NV+L+H ERGGWP+LAF+L+ LL++RK + GE++TLE+VH++APK  L LLSPLNP PSQ
Sbjct: 121 NVLLMHCERGGWPVLAFMLSGLLLYRKQYHGEQKTLEMVHKQAPKELLHLLSPLNPQPSQ 180

Query: 181 LRYLQYVARRNITPEWPPPERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLS 240
           LRYLQY++RRN+  +WPP +  L LDC+ILR +P+F+ + GCRPI+R++G++ +++   S
Sbjct: 181 LRYLQYISRRNLGSDWPPSDTPLLLDCLILRDLPHFEGKKGCRPILRVYGQDPKARTNRS 240

Query: 241 TQMIFSMSKKRKTLRHYRQADCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMFN 300
           + ++FS  K +K  R Y+Q +C ++K+DIQC VQGDVVLEC+HL  D   E M+FR+MF+
Sbjct: 241 SILLFSTLKTKKHTRLYQQEECILVKLDIQCRVQGDVVLECIHLHDDLVSEEMVFRIMFH 300

Query: 301 TAFIRSNILMLNSENLDILWDSKERYPKGFRAEVLFGDVESISPPRAPTSILNGEE 356
           TAF+R+NILML  + +DILWD K+++PK F+AEVLF   +++ PP   TS L+ +E
Sbjct: 301 TAFVRANILMLQRDEMDILWDVKDQFPKEFKAEVLFSGADAVVPP-ITTSTLSDDE 355

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVN1|FH13_ARATH Formin-like protein 13 OS=Arabidopsis thaliana GN=FH13 PE=2 SV=3

 Score =  459 bits (1181), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 208/402 (51%), Positives = 297/402 (73%), Gaps = 10/402 (2%)

Query: 1   MSLLSRFFYKRPPDGLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAF 60
           M+L  + FY++PPDGLLE  +RV+VFD CFST+   +  Y++Y+  ++ +L E FP+++ 
Sbjct: 1   MALFRKLFYRKPPDGLLEICDRVFVFDCCFSTDSWEEENYKVYMAGVVNQLQEHFPEASS 60

Query: 61  LAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQ 120
           L FNFRE   +S  A++L E+ +T++DYPR YEGC LLP+ ++ HFLR  E WL LG + 
Sbjct: 61  LVFNFREVGTRSVMADVLSEHGLTIMDYPRHYEGCSLLPVEVMHHFLRSSESWLSLGPN- 119

Query: 121 NVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGFLQLLSPLNPFPSQ 180
           N++L+H E G WP+LAF+LA+LLI+RK +SGE +TL++++++AP+  L+L SPLNP PSQ
Sbjct: 120 NLLLMHCESGAWPVLAFMLAALLIYRKQYSGESKTLDMIYKQAPRELLRLFSPLNPIPSQ 179

Query: 181 LRYLQYVARRNITPEWPPPERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLS 240
           LRYLQYV+RRN+  EWPP +RAL++DCVILR IP+   Q G RP+ RI+G++        
Sbjct: 180 LRYLQYVSRRNLVSEWPPLDRALTMDCVILRFIPDVSGQGGFRPMFRIYGQDPFFVDDKK 239

Query: 241 TQMIFSMSKKRKTLRHYRQADCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMFN 300
            +++++  KK K LR Y+QA+C+++KIDI C VQGD+V+EC+ L+ D EREVMMFRV+FN
Sbjct: 240 PKLLYTTPKKGKHLRVYKQAECELVKIDINCHVQGDIVIECLSLNDDMEREVMMFRVVFN 299

Query: 301 TAFIRSNILMLNSENLDILWDSKERYPKGFRAEVLFGDVESISPPRAPTSILNG---EEK 357
           TAFIRSNILMLN + +D LW  KE +PKGFR E+LF D+++ S       ++N    EEK
Sbjct: 300 TAFIRSNILMLNRDEVDTLWHIKE-FPKGFRVELLFSDMDAAS----SVDLMNFSSLEEK 354

Query: 358 GGLPIEAFSRVRELFSGVEWVDNSDALW-LLKQLSVFSDVKE 398
            GLPIE FS+V E F+ V+WVD +DA   + +QL++ + V+E
Sbjct: 355 DGLPIEVFSKVHEFFNQVDWVDQTDATRNMFQQLAIANAVQE 396

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK28|FH18_ARATH Formin-like protein 18 OS=Arabidopsis thaliana GN=FH18 PE=2 SV=2

 Score =  424 bits (1090), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 188/367 (51%), Positives = 274/367 (74%), Gaps = 4/367 (1%)

Query: 34  VVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQYE 93
           ++ D  Y++Y+  I+++L E+FP ++F+ FNFR+G+ +S    +L EYD+T++DYPR YE
Sbjct: 1   MLEDEDYRVYVSRIMSQLREQFPGASFMVFNFRDGDSRSRMESVLTEYDMTIMDYPRHYE 60

Query: 94  GCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGER 153
           GCPLL M  + HFL+  E WLLL   QN++L H E GGWP LAF+LASLL++RK  SGE 
Sbjct: 61  GCPLLTMETVHHFLKSAESWLLLS-QQNILLSHCELGGWPTLAFMLASLLLYRKQFSGEH 119

Query: 154 RTLEIVHREAPKGFLQLLSPLNPFPSQLRYLQYVARRNITPEWPPPERALSLDCVILRAI 213
           RTLE+++++AP+  LQL+SPLNP PSQLR+LQY++RRN+  +WPP ++AL+LDCV LR I
Sbjct: 120 RTLEMIYKQAPRELLQLMSPLNPLPSQLRFLQYISRRNVGSQWPPLDQALTLDCVNLRLI 179

Query: 214 PNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTLRHYRQADCDVIKIDIQCLV 273
           P+FD + GCRPI RI+G++       +++++FSM K+ K +R Y+QADC+++KIDI C +
Sbjct: 180 PDFDGEGGCRPIFRIYGQDPFMASDRTSKVLFSMPKRSKAVRQYKQADCELVKIDINCHI 239

Query: 274 QGDVVLECVHLDLDPEREVMMFRVMFNTAFIRSNILMLNSENLDILWDSKERYPKGFRAE 333
            GDVVLEC+ L  D ERE MMFRV+FNTAF+RSNIL LN   +D+LW++ +R+PK F AE
Sbjct: 240 LGDVVLECITLGSDLEREEMMFRVVFNTAFLRSNILTLNRGEIDVLWNTTDRFPKDFSAE 299

Query: 334 VLFGDVESISPPRAPTSILNGEEKGGLPIEAFSRVRELFSGVEWVD-NSD-ALWLLKQLS 391
           V+F ++ +     A   + + EEK  LP+EAF++V+E+FS  EW+D NSD A+ +  Q++
Sbjct: 300 VIFSEMGA-GKKLASVDLPHMEEKDVLPMEAFAKVQEIFSEAEWLDPNSDVAVTVFNQIT 358

Query: 392 VFSDVKE 398
             + ++E
Sbjct: 359 AANILQE 365

Arabidopsis thaliana (taxid: 3702)

>sp|Q84ZL0|FH5_ORYSJ Formin-like protein 5 OS=Oryza sativa subsp. japonica GN=FH5 PE=2 SV=2

 Score =  386 bits (992), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 171/349 (48%), Positives = 247/349 (70%), Gaps = 2/349 (0%)

Query: 1   MSLLSRFFYKRPPDGLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAF 60
           M+L  +FF K+ PD LLE  ERVYVFD CFST+ + +  Y+ YL  I+ +L + FPD++F
Sbjct: 1   MALFRKFFLKKTPDRLLEISERVYVFDCCFSTDSMGEDEYRDYLSGIVAQLQDYFPDASF 60

Query: 61  LAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQ 120
           +  NF  G+K+S  ++IL EYD+TV+DYP+QYEGCPLL + +I HFL+ CE+WL +    
Sbjct: 61  MVSNFWSGDKRSRISDILSEYDMTVMDYPQQYEGCPLLQLEMIHHFLKSCENWLSVEGQH 120

Query: 121 NVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGFLQLLSPLNPFPSQ 180
           N++L+H ERGGWP+LAF+LA LL++RK ++GE++TLE+V+++A + F+Q   PLNP  S 
Sbjct: 121 NMLLMHCERGGWPVLAFMLAGLLLYRKTYTGEQKTLEMVYKQARRDFIQQFFPLNPQSSH 180

Query: 181 LRYLQYVARRNITPEWPPPERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLS 240
           +RYL Y+ R+   PE PP  R L LD ++L  +P FDA+ GCRP +R+ G++  S    S
Sbjct: 181 MRYLHYITRQGSGPEKPPISRPLILDSIVLHVVPRFDAEGGCRPYLRVHGQD-SSSSNKS 239

Query: 241 TQMIFSMSKKRKTLRHYRQADCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMFN 300
            ++++ M K +K L+ Y QA+  V K+   C VQGDVVLEC+H+  + + E +MFRVMFN
Sbjct: 240 AKVLYEMPKTKKHLQRYGQAEVPV-KVGAFCRVQGDVVLECIHIGDNLDHEEIMFRVMFN 298

Query: 301 TAFIRSNILMLNSENLDILWDSKERYPKGFRAEVLFGDVESISPPRAPT 349
           TAFI+SNIL LN +++D+ W+S  ++P+ FRAEV+F D  S  P  A  
Sbjct: 299 TAFIQSNILGLNRDDIDVSWNSNNQFPRDFRAEVVFSDPGSFKPAAATV 347

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XWS7|FH12_ORYSJ Formin-like protein 12 OS=Oryza sativa subsp. japonica GN=FH12 PE=3 SV=3

 Score =  380 bits (976), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/377 (48%), Positives = 254/377 (67%), Gaps = 3/377 (0%)

Query: 1   MSLLSRFFYKRPPDGLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAF 60
           M+LL R FY++PPD LLE  +RVYVFD CFSTE +    Y+ YL  I+ +L E+F DS+ 
Sbjct: 1   MALLRRLFYRKPPDRLLEIADRVYVFDCCFSTETMEQFEYKNYLDNIVLQLREQFVDSSL 60

Query: 61  LAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQ 120
           + FNFR+ E +S  + +   Y +TV DYP QY GCPLLP+ ++ HFLR+ E WL+L   Q
Sbjct: 61  MVFNFRD-EGKSLVSGLFSLYGITVKDYPCQYLGCPLLPLEMVLHFLRLSERWLMLEGQQ 119

Query: 121 NVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGFLQLLSPLNPFPSQ 180
           N +L+H E+GGWP+LAF+LA LL++ K ++GE RTL +V+++APK  LQ+L+ LNP PS 
Sbjct: 120 NFLLMHCEKGGWPVLAFMLAGLLLYMKQYNGEERTLVMVYKQAPKELLQMLTTLNPQPSH 179

Query: 181 LRYLQYVARRNITPEWPPPERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLS 240
           LRYLQY+ + +   EWP      +LDCVILR +PNFD   GCRPI+R++G++F +     
Sbjct: 180 LRYLQYICKMDDELEWPIQPIPFTLDCVILREVPNFDGVGGCRPIVRVYGQDFLTVDKRC 239

Query: 241 TQMIFSMSKKRKTLRHYRQ-ADCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMF 299
             M+   SK RK  R Y+Q AD   +K+++   VQGDVVLEC+H+D   E E +MFRVMF
Sbjct: 240 NVML-PPSKPRKHARRYKQQADNISVKLNVGSCVQGDVVLECLHIDDSLEDERLMFRVMF 298

Query: 300 NTAFIRSNILMLNSENLDILWDSKERYPKGFRAEVLFGDVESISPPRAPTSILNGEEKGG 359
           NT FI+S+IL LN EN+D+ WD+++R+ K F+AEVLF + +  S      +    +E   
Sbjct: 299 NTYFIQSHILPLNFENIDVSWDAEQRFTKKFKAEVLFSEFDGESDASIEVASDYDDEVEV 358

Query: 360 LPIEAFSRVRELFSGVE 376
             I+ F    E+FS ++
Sbjct: 359 GSIDVFFEAVEIFSNLD 375

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6K8Z4|FH7_ORYSJ Formin-like protein 7 OS=Oryza sativa subsp. japonica GN=FH7 PE=2 SV=2

 Score =  308 bits (788), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 150/379 (39%), Positives = 234/379 (61%), Gaps = 43/379 (11%)

Query: 1   MSLLSRFFYKRPPDGLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAF 60
           M+L  +FF+K+PPDGLL   + +YVFD CFS + + +  ++ ++  +   L + F D +F
Sbjct: 1   MALFRKFFFKKPPDGLLLITDNIYVFDHCFSMKEMEEDHFEAHIRGVAAHLLDNFGDHSF 60

Query: 61  LAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQ 120
           +  NF   +++S    IL EY +TVLDYP  YEGCPLL M ++   L+  E WL LG  +
Sbjct: 61  MISNFGIRDEESPIYHILSEYGMTVLDYPGHYEGCPLLTMEMVHCILKSSESWLSLG-QR 119

Query: 121 NVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGFLQLLSPLNPFPSQ 180
           N +++H E+G WP+LAF+LA+LLI+   +S E++TL+++++++P   L++ SPLNP PSQ
Sbjct: 120 NFLIMHCEQGCWPILAFMLAALLIYLGQYSDEQKTLDMLYKQSPVELLEMFSPLNPMPSQ 179

Query: 181 LRYLQYVARRNITPEWPPPERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLS 240
           LRYL+YV+ RN+ PEWPP +RAL+LD VILR +P+F  Q G RPI RI+G +       +
Sbjct: 180 LRYLRYVSMRNVVPEWPPADRALTLDSVILRMVPDFHGQGGFRPIFRIYGPDPLMPTDQT 239

Query: 241 TQMIFSMSKKRKTLRHYRQADCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMFN 300
            +++FS  K+   +R Y QAD +++KI++QC VQGDVVLEC++L  D +RE M       
Sbjct: 240 PKVLFSTPKRSNVVRFYSQAD-ELVKINLQCHVQGDVVLECINLYEDLDREDM------- 291

Query: 301 TAFIRSNILMLNSENLDILWDSKERYPKGFRAEVLFGDVESISPPRAPTSILNGEEKGGL 360
                                            V+F D+++ +     T  ++ +EK GL
Sbjct: 292 ---------------------------------VIFSDMDA-TTSHITTEPVSHQEKQGL 317

Query: 361 PIEAFSRVRELFSGVEWVD 379
            IE F++V ++F+ ++W+D
Sbjct: 318 GIEEFAKVLDIFNHLDWLD 336

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LH02|FH17_ARATH Formin-like protein 17 OS=Arabidopsis thaliana GN=FH17 PE=2 SV=2

 Score =  199 bits (506), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 90/147 (61%), Positives = 117/147 (79%), Gaps = 1/147 (0%)

Query: 904  PKKASLKPLHWVKVTRAMQGSLWADSQKQENHSRAPEIDISELESLFSAASDGSGTNKTG 963
             +KA+LKP HW+K+TRA+QGSLWA++QK +  + AP+ DISE+E LFSA +  S +   G
Sbjct: 91   TRKANLKPYHWLKLTRAVQGSLWAEAQKSDEAATAPDFDISEIEKLFSAVNLSSNSENNG 150

Query: 964  VRRGSNIN-KPEKVQLVELRRAYNCEIMLTKIKIPLPDMMNAVLALDSSALDIDQVENLI 1022
             + G     K EKVQL+EL+RAYNCEIML+K+KIPLPD+M++VLALD S +D+DQV+NLI
Sbjct: 151  GKSGRRARPKVEKVQLIELKRAYNCEIMLSKVKIPLPDLMSSVLALDESVIDVDQVDNLI 210

Query: 1023 KFCPTKEEMELLKNYAGDKVMLGKCEQ 1049
            KFCPTKEE ELLK + G+K  LG+CEQ
Sbjct: 211  KFCPTKEEAELLKGFIGNKETLGRCEQ 237

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1052
255557693	820	DNA binding protein, putative [Ricinus c	0.451	0.579	0.801	0.0
225427486	1269	PREDICTED: uncharacterized protein LOC10	0.447	0.371	0.770	0.0
449453312	1256	PREDICTED: formin-like protein 14-like [	0.419	0.351	0.839	0.0
296088480	1082	unnamed protein product [Vitis vinifera]	0.449	0.437	0.769	0.0
449506096	529	PREDICTED: formin-like protein 14-like [	0.419	0.833	0.839	0.0
186479105	1230	formin-like protein 14 [Arabidopsis thal	0.430	0.368	0.755	0.0
302595094	1033	type II formin [Arabidopsis thaliana]	0.430	0.438	0.755	0.0
357484593	612	Formin-like protein, partial [Medicago t	0.451	0.776	0.773	0.0
12321294	1201	unknown protein [Arabidopsis thaliana]	0.399	0.349	0.743	0.0
356508230	1206	PREDICTED: uncharacterized protein LOC10	0.460	0.401	0.719	0.0

>gi|255557693|ref|XP_002519876.1| DNA binding protein, putative [Ricinus communis] gi|223540922|gb|EEF42480.1| DNA binding protein, putative [Ricinus communis]

 Score =  832 bits (2148), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/493 (80%), Positives = 438/493 (88%), Gaps = 18/493 (3%)

Query: 1   MSLLSRFFYKRPPDGLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAF 60
           MSLLSRFFYKRPPDGLLEF++RVYVFDSCFSTEV+PD +YQ+YLHEI+ ELHEEFPDS+F
Sbjct: 1   MSLLSRFFYKRPPDGLLEFVDRVYVFDSCFSTEVLPDELYQIYLHEIVAELHEEFPDSSF 60

Query: 61  LAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQ 120
           LAFNFREGEK+S+FAEILC+YDVTV+DYPRQYEGCPLLP+SLIQHFLRVCE WL LG+HQ
Sbjct: 61  LAFNFREGEKRSQFAEILCQYDVTVMDYPRQYEGCPLLPLSLIQHFLRVCETWLSLGNHQ 120

Query: 121 NVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGFLQLLSPLNPFPSQ 180
           N+IL+H ERGGWP+LAFLLAS LIF KLHSGERRTLE+VHREAPKGFLQLLSPLNPFPSQ
Sbjct: 121 NIILIHCERGGWPILAFLLASFLIFSKLHSGERRTLELVHREAPKGFLQLLSPLNPFPSQ 180

Query: 181 LRYLQYVARRNITPEWPPPERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLS 240
           LRYLQYVARRNI PEWPPPERALSLDC+ILRAIP+FD++ GCRPIIRIFGRN  +K GLS
Sbjct: 181 LRYLQYVARRNIAPEWPPPERALSLDCIILRAIPSFDSEKGCRPIIRIFGRNLHTKSGLS 240

Query: 241 TQMIFSMSKKRK-TLRHYRQADCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMF 299
           TQM+FSMSK++K TLRHY QADCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMF
Sbjct: 241 TQMLFSMSKRKKTTLRHYCQADCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMF 300

Query: 300 NTAFIRSNILMLNSENLDILWDSKERYPKGFRAEVLFGDVESISPPRAPTSILNGEEKGG 359
           NTAFIRSNILMLNSENLDILWDSKERYPKGFRAEVLFGD ESISPP+APT+ILNGEEKGG
Sbjct: 301 NTAFIRSNILMLNSENLDILWDSKERYPKGFRAEVLFGDAESISPPKAPTTILNGEEKGG 360

Query: 360 LPIEAFSRVRELFSGVEWVDNSD--ALWLLKQLSVFSDVKEFTRMQDRGSSYTSPVDSEE 417
           LPIEAFSRV+ELFSGVEWVDN++  ALWLLKQLSV +D +EF+R+Q++ SSYTSP+DSEE
Sbjct: 361 LPIEAFSRVQELFSGVEWVDNNEDAALWLLKQLSVLTDAREFSRLQNKSSSYTSPIDSEE 420

Query: 418 ENNASSAGDSLDEAFDVFPEPLVDTKKLLLSNAG--DSVTSLSKNEGPHDVILVSEPIDQ 475
           E NASS  DS DEAFD+ P+   D+  L + + G  DS  +L   E P           Q
Sbjct: 421 EYNASSTADSSDEAFDLNPKNSADSVLLPIESGGLPDSGNAL---ESPA----------Q 467

Query: 476 VSNETVLSSLHQQ 488
            S ETV SSLHQQ
Sbjct: 468 FSLETVPSSLHQQ 480

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427486|ref|XP_002263093.1| PREDICTED: uncharacterized protein LOC100264917 [Vitis vinifera]

 Score =  815 bits (2104), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/510 (77%), Positives = 427/510 (83%), Gaps = 39/510 (7%)

Query: 1   MSLLSRFFYKRPPDGLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAF 60
           MSLLSRFFY+RPPDGLLEF++RVYVFDSCFSTEV+P+GMYQ+YLHEI+ ELHE++PDS+F
Sbjct: 1   MSLLSRFFYRRPPDGLLEFVDRVYVFDSCFSTEVLPNGMYQIYLHEIINELHEQYPDSSF 60

Query: 61  LAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQ 120
           LAFNFREGEK+S+FAEILCEYDVTVLDYPRQYEGCPLLP+SLIQHFLRVC  WL LG  Q
Sbjct: 61  LAFNFREGEKRSQFAEILCEYDVTVLDYPRQYEGCPLLPLSLIQHFLRVCGSWLSLGSQQ 120

Query: 121 NVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGFLQLLSPLNPFPSQ 180
           N+ILLH ERGGWPLLA LLAS LIFRKLHSGER+TLEIVHREAPKGFLQLLSPLNPFPSQ
Sbjct: 121 NIILLHCERGGWPLLALLLASFLIFRKLHSGERKTLEIVHREAPKGFLQLLSPLNPFPSQ 180

Query: 181 LRYLQYVARRNITPEWPPPERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLS 240
           LRYLQYVARRNI+PEWPPPERALSLDCV LRAIP+FD+QNGCRPIIRIFGRN  SKGGLS
Sbjct: 181 LRYLQYVARRNISPEWPPPERALSLDCVFLRAIPSFDSQNGCRPIIRIFGRNLHSKGGLS 240

Query: 241 TQMIFSMSKKRKTLRHYRQADCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMFN 300
           TQM+FSMSKKRKT+RHY QADCDVIKIDIQC+VQGDVVLECVHLD+D EREVMMFRVMFN
Sbjct: 241 TQMLFSMSKKRKTIRHYCQADCDVIKIDIQCMVQGDVVLECVHLDVDSEREVMMFRVMFN 300

Query: 301 TAFIRSNILMLNSENLDILWDSKERYPKGFRAEVLFGDVESISPPRAPTSILNGEEKGGL 360
           TAFIRSNILMLN ENLDILWDSKERYPKGFRAEVLFGDVESISP RAPT ILNGEE+GGL
Sbjct: 301 TAFIRSNILMLNCENLDILWDSKERYPKGFRAEVLFGDVESISPSRAPTEILNGEEQGGL 360

Query: 361 PIEAFSRVRELFSGVEWVDNSD--ALWLLKQLSVFSDVKEFTRMQDRGSSYTSPVDSEEE 418
           PIEAFSRV+ELFSGVEWVDNSD   LWLLKQLSV +D KE +R  ++ SS TSP DSEEE
Sbjct: 361 PIEAFSRVQELFSGVEWVDNSDDATLWLLKQLSVLNDAKELSRFPNKVSSRTSPADSEEE 420

Query: 419 NNASSAGDSLDEAFDVFPEPLVDTKKLLLSNAGDSVTSLSKNEGPHDVIL---------V 469
           NNASS  DSLD          +D++K         V SL+    P D  L          
Sbjct: 421 NNASSIADSLD---------FMDSEK---------VNSLTNTTEPADNFLDDPSFQDSAS 462

Query: 470 SEPID----------QVSNETVLSSLHQQS 489
            E  D          Q S ET +SS+HQQS
Sbjct: 463 DEATDIIPSPPAASNQASIETAMSSVHQQS 492

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453312|ref|XP_004144402.1| PREDICTED: formin-like protein 14-like [Cucumis sativus]

 Score =  813 bits (2100), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/443 (83%), Positives = 407/443 (91%), Gaps = 2/443 (0%)

Query: 1   MSLLSRFFYKRPPDGLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAF 60
           MSLLSRFFY+RPPDGLLEF+ERVY+FDSCFSTE +PDGMYQ+YLHEI+ ELHEEFPDS+F
Sbjct: 1   MSLLSRFFYRRPPDGLLEFVERVYIFDSCFSTEALPDGMYQIYLHEIINELHEEFPDSSF 60

Query: 61  LAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQ 120
           LAFNFREGEK+S+FAE+LC YDVTV+DYPRQYEGCPLLP+SLIQHFLRVCE WLLLG+ Q
Sbjct: 61  LAFNFREGEKRSQFAEVLCAYDVTVMDYPRQYEGCPLLPLSLIQHFLRVCESWLLLGNQQ 120

Query: 121 NVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGFLQLLSPLNPFPSQ 180
           NVILLH ERGGWPLLAFLLAS LIFRK+HSGER+TLEIVHREAPKGFLQLLSPLNPFPSQ
Sbjct: 121 NVILLHCERGGWPLLAFLLASFLIFRKMHSGERKTLEIVHREAPKGFLQLLSPLNPFPSQ 180

Query: 181 LRYLQYVARRNITPEWPPPERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLS 240
           LRYLQYVARRNI  EWPPPERALSLDCVILR +P FDAQNGCRP+IRIFGRN  SKGGLS
Sbjct: 181 LRYLQYVARRNIVSEWPPPERALSLDCVILRGVPGFDAQNGCRPVIRIFGRNLFSKGGLS 240

Query: 241 TQMIFSMSKKRKTLRHYRQADCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMFN 300
           TQM+FSM KK K LRHY QADCDVIKID+QCLVQGDVVLEC HL+ +PEREVMMFR+MFN
Sbjct: 241 TQMLFSMPKKNKALRHYHQADCDVIKIDVQCLVQGDVVLECSHLESEPEREVMMFRIMFN 300

Query: 301 TAFIRSNILMLNSENLDILWDSKERYPKGFRAEVLFGDVESISPPRAPTSILNGEEKGGL 360
           TAFIRSNILML SENLDILW+SKERYPKGFRAEVLFG++E+ISPPRAPTSILNGEEKGGL
Sbjct: 301 TAFIRSNILMLTSENLDILWESKERYPKGFRAEVLFGEMENISPPRAPTSILNGEEKGGL 360

Query: 361 PIEAFSRVRELFSGVEWVDNSD--ALWLLKQLSVFSDVKEFTRMQDRGSSYTSPVDSEEE 418
           PIEAFSRV+ELFSGVEW+DN+D  ALWLLK LS  SDVKE +R+Q + SSY+SPVDSEEE
Sbjct: 361 PIEAFSRVQELFSGVEWIDNNDDAALWLLKNLSALSDVKELSRLQYKTSSYSSPVDSEEE 420

Query: 419 NNASSAGDSLDEAFDVFPEPLVD 441
           NN SS  DS DE FD+  +P VD
Sbjct: 421 NNTSSTADSSDEVFDIITKPFVD 443

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088480|emb|CBI37471.3| unnamed protein product [Vitis vinifera]

 Score =  810 bits (2091), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/512 (76%), Positives = 428/512 (83%), Gaps = 39/512 (7%)

Query: 1   MSLLSRFFYKRPPDGLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAF 60
           MSLLSRFFY+RPPDGLLEF++RVYVFDSCFSTEV+P+GMYQ+YLHEI+ ELHE++PDS+F
Sbjct: 1   MSLLSRFFYRRPPDGLLEFVDRVYVFDSCFSTEVLPNGMYQIYLHEIINELHEQYPDSSF 60

Query: 61  LAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQ 120
           LAFNFREGEK+S+FAEILCEYDVTVLDYPRQYEGCPLLP+SLIQHFLRVC  WL LG  Q
Sbjct: 61  LAFNFREGEKRSQFAEILCEYDVTVLDYPRQYEGCPLLPLSLIQHFLRVCGSWLSLGSQQ 120

Query: 121 NVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGFLQLLSPLNPFPSQ 180
           N+ILLH ERGGWPLLA LLAS LIFRKLHSGER+TLEIVHREAPKGFLQLLSPLNPFPSQ
Sbjct: 121 NIILLHCERGGWPLLALLLASFLIFRKLHSGERKTLEIVHREAPKGFLQLLSPLNPFPSQ 180

Query: 181 LRYLQYVARRNITPEWPPPERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLS 240
           LRYLQYVARRNI+PEWPPPERALSLDCV LRAIP+FD+QNGCRPIIRIFGRN  SKGGLS
Sbjct: 181 LRYLQYVARRNISPEWPPPERALSLDCVFLRAIPSFDSQNGCRPIIRIFGRNLHSKGGLS 240

Query: 241 TQMIFSMSKKRKTLRHYRQADCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMFN 300
           TQM+FSMSKKRKT+RHY QADCDVIKIDIQC+VQGDVVLECVHLD+D EREVMMFRVMFN
Sbjct: 241 TQMLFSMSKKRKTIRHYCQADCDVIKIDIQCMVQGDVVLECVHLDVDSEREVMMFRVMFN 300

Query: 301 TAFIRSNILMLNSENLDILWDSKERYPKGFRAEVLFGDVESISPPRAPTSILNGEEKGGL 360
           TAFIRSNILMLN ENLDILWDSKERYPKGFRAEVLFGDVESISP RAPT ILNGEE+GGL
Sbjct: 301 TAFIRSNILMLNCENLDILWDSKERYPKGFRAEVLFGDVESISPSRAPTEILNGEEQGGL 360

Query: 361 PIEAFSRVRELFSGVEWVDNSD--ALWLLKQLSVFSDVKEFTRMQDRGSSYTSPVDSEEE 418
           PIEAFSRV+ELFSGVEWVDNSD   LWLLKQLSV +D KE +R  ++ SS TSP DSEEE
Sbjct: 361 PIEAFSRVQELFSGVEWVDNSDDATLWLLKQLSVLNDAKELSRFPNKVSSRTSPADSEEE 420

Query: 419 NNASSAGDSLDEAFDVFPEPLVDTKKLLLSNAGDSVTSLSKNEGPHDVIL---------V 469
           NNASS  DSLD          +D++K         V SL+    P D  L          
Sbjct: 421 NNASSIADSLD---------FMDSEK---------VNSLTNTTEPADNFLDDPSFQDSAS 462

Query: 470 SEPID----------QVSNETVLSSLHQQSLV 491
            E  D          Q S ET +SS+HQQS V
Sbjct: 463 DEATDIIPSPPAASNQASIETAMSSVHQQSSV 494

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449506096|ref|XP_004162651.1| PREDICTED: formin-like protein 14-like [Cucumis sativus]

 Score =  797 bits (2059), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/443 (83%), Positives = 408/443 (92%), Gaps = 2/443 (0%)

Query: 1   MSLLSRFFYKRPPDGLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAF 60
           MSLLSRFFY+RPPDGLLEF+ERVY+FDSCFSTE +PDGMYQ+YLHEI+ ELHEEFPDS+F
Sbjct: 1   MSLLSRFFYRRPPDGLLEFVERVYIFDSCFSTEALPDGMYQIYLHEIINELHEEFPDSSF 60

Query: 61  LAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQ 120
           LAFNFREGEK+S+FAE+LC YDVTV+DYPRQYEGCPLLP+SLIQHFLRVCE WLLLG+ Q
Sbjct: 61  LAFNFREGEKRSQFAEVLCAYDVTVMDYPRQYEGCPLLPLSLIQHFLRVCESWLLLGNQQ 120

Query: 121 NVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGFLQLLSPLNPFPSQ 180
           NVILLH ERGGWPLLAFLLAS LIFRK+HSGER+TLEIVHREAPKGFLQLLSPLNPFPSQ
Sbjct: 121 NVILLHCERGGWPLLAFLLASFLIFRKMHSGERKTLEIVHREAPKGFLQLLSPLNPFPSQ 180

Query: 181 LRYLQYVARRNITPEWPPPERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLS 240
           LRYLQYVARRNI  EWPPPERALSLDCVILR +P FDAQNGCRP+IRIFGRN  SKGGLS
Sbjct: 181 LRYLQYVARRNIVSEWPPPERALSLDCVILRGVPGFDAQNGCRPVIRIFGRNLFSKGGLS 240

Query: 241 TQMIFSMSKKRKTLRHYRQADCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMFN 300
           TQM+FSM KK K LRHY QADCDVIKID+QCLVQGDVVLEC HL+ +PEREVMMFR+MFN
Sbjct: 241 TQMLFSMPKKNKALRHYHQADCDVIKIDVQCLVQGDVVLECSHLESEPEREVMMFRIMFN 300

Query: 301 TAFIRSNILMLNSENLDILWDSKERYPKGFRAEVLFGDVESISPPRAPTSILNGEEKGGL 360
           TAFIRSNILML SENLDILW+SKERYPKGFRAEVLFG++E+ISPPRAPTSILNGEEKGGL
Sbjct: 301 TAFIRSNILMLTSENLDILWESKERYPKGFRAEVLFGEMENISPPRAPTSILNGEEKGGL 360

Query: 361 PIEAFSRVRELFSGVEWVDNSD--ALWLLKQLSVFSDVKEFTRMQDRGSSYTSPVDSEEE 418
           PIEAFSRV+ELFSGVEW+DN+D  ALWLLK LS  SDVKE +R+Q++ SSY+SPVDSEEE
Sbjct: 361 PIEAFSRVQELFSGVEWIDNNDDAALWLLKNLSALSDVKELSRLQNKTSSYSSPVDSEEE 420

Query: 419 NNASSAGDSLDEAFDVFPEPLVD 441
           NN SS  DS DE FD+  +P VD
Sbjct: 421 NNTSSTADSSDEVFDIITKPFVD 443

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186479105|ref|NP_174461.3| formin-like protein 14 [Arabidopsis thaliana] gi|166215071|sp|Q9C6S1.3|FH14_ARATH RecName: Full=Formin-like protein 14; Short=AtFH14 gi|332193274|gb|AEE31395.1| formin-like protein 14 [Arabidopsis thaliana]

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/462 (75%), Positives = 398/462 (86%), Gaps = 9/462 (1%)

Query: 1   MSLLSRFFYKRPPDGLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAF 60
           MSLLSRFFYKRPPDGLLEF +RVYVFDSCF TEV+ D +YQ++LHE++ +LHEEFP+S+F
Sbjct: 1   MSLLSRFFYKRPPDGLLEFADRVYVFDSCFCTEVLADSLYQIFLHEVINDLHEEFPESSF 60

Query: 61  LAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQ 120
           LAFNFREGEK+S FAE LCEYDVTVL+YPRQYEGCP+LP+SLIQHFLRVCE WL  G+ Q
Sbjct: 61  LAFNFREGEKKSVFAETLCEYDVTVLEYPRQYEGCPMLPLSLIQHFLRVCESWLARGNRQ 120

Query: 121 NVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGFLQLLSPLNPFPSQ 180
           +VILLH ERGGWPLLAF+LAS LIFRK+HSGERRTLEIVHREAPKG LQLLSPLNPFPSQ
Sbjct: 121 DVILLHCERGGWPLLAFILASFLIFRKVHSGERRTLEIVHREAPKGLLQLLSPLNPFPSQ 180

Query: 181 LRYLQYVARRNITPEWPPPERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLS 240
           LRYLQYVARRNI  EWPPPERALSLDCVI+R IPNFD+Q+GCRPIIRIFGRN+ SK GLS
Sbjct: 181 LRYLQYVARRNINSEWPPPERALSLDCVIIRGIPNFDSQHGCRPIIRIFGRNYSSKSGLS 240

Query: 241 TQMIFSMSKKRKTLRHYRQADCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMFN 300
           T+M++SMS K+K LRHYRQA+CDVIKIDIQC VQGDVVLECVH+DLDPEREVMMFRVMFN
Sbjct: 241 TEMVYSMSDKKKPLRHYRQAECDVIKIDIQCWVQGDVVLECVHMDLDPEREVMMFRVMFN 300

Query: 301 TAFIRSNILMLNSENLDILWDSKERYPKGFRAEVLFGDVESISPPRAPTSILNGEEKGGL 360
           TAFIRSNILMLNS+NLDILW++K+ YPKGFRAEVLFG+VE+ SP + PT I+NG+E GGL
Sbjct: 301 TAFIRSNILMLNSDNLDILWEAKDHYPKGFRAEVLFGEVENASPQKVPTPIVNGDETGGL 360

Query: 361 PIEAFSRVRELFSGVEWVDNSD--ALWLLKQLSVFSDVKEFTRMQDRGSSYTSPVDSEEE 418
           PIEAFSRV+ELFSGV+  +N D  ALWLLKQL+  +D KEFTR + +GS Y +  DSEEE
Sbjct: 361 PIEAFSRVQELFSGVDLAENGDDAALWLLKQLAAINDAKEFTRFRHKGSFYFNSPDSEEE 420

Query: 419 NNASSAGDSLDEAFDVFPEPLV-------DTKKLLLSNAGDS 453
            N SSA DS DE F+    P +       DT  + LS A +S
Sbjct: 421 TNTSSAADSSDEGFEAIQRPRIHIPFDNDDTDDITLSVAHES 462

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302595094|gb|ADL59580.1| type II formin [Arabidopsis thaliana]

 Score =  763 bits (1971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/462 (75%), Positives = 398/462 (86%), Gaps = 9/462 (1%)

Query: 1   MSLLSRFFYKRPPDGLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAF 60
           MSLLSRFFYKRPPDGLLEF +RVYVFDSCF TEV+ D +YQ++LHE++ +LHEEFP+S+F
Sbjct: 1   MSLLSRFFYKRPPDGLLEFADRVYVFDSCFCTEVLADSLYQIFLHEVINDLHEEFPESSF 60

Query: 61  LAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQ 120
           LAFNFREGEK+S FAE LCEYDVTVL+YPRQYEGCP+LP+SLIQHFLRVCE WL  G+ Q
Sbjct: 61  LAFNFREGEKKSVFAETLCEYDVTVLEYPRQYEGCPMLPLSLIQHFLRVCESWLARGNRQ 120

Query: 121 NVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGFLQLLSPLNPFPSQ 180
           +VILLH ERGGWPLLAF+LAS LIFRK+HSGERRTLEIVHREAPKG LQLLSPLNPFPSQ
Sbjct: 121 DVILLHCERGGWPLLAFILASFLIFRKVHSGERRTLEIVHREAPKGLLQLLSPLNPFPSQ 180

Query: 181 LRYLQYVARRNITPEWPPPERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLS 240
           LRYLQYVARRNI  EWPPPERALSLDCVI+R IPNFD+Q+GCRPIIRIFGRN+ SK GLS
Sbjct: 181 LRYLQYVARRNINSEWPPPERALSLDCVIIRGIPNFDSQHGCRPIIRIFGRNYSSKSGLS 240

Query: 241 TQMIFSMSKKRKTLRHYRQADCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMFN 300
           T+M++SMS K+K LRHYRQA+CDVIKIDIQC VQGDVVLECVH+DLDPEREVMMFRVMFN
Sbjct: 241 TEMVYSMSDKKKPLRHYRQAECDVIKIDIQCWVQGDVVLECVHMDLDPEREVMMFRVMFN 300

Query: 301 TAFIRSNILMLNSENLDILWDSKERYPKGFRAEVLFGDVESISPPRAPTSILNGEEKGGL 360
           TAFIRSNILMLNS+NLDILW++K+ YPKGFRAEVLFG+VE+ SP + PT I+NG+E GGL
Sbjct: 301 TAFIRSNILMLNSDNLDILWEAKDHYPKGFRAEVLFGEVENASPQKVPTPIVNGDETGGL 360

Query: 361 PIEAFSRVRELFSGVEWVDNSD--ALWLLKQLSVFSDVKEFTRMQDRGSSYTSPVDSEEE 418
           PIEAFSRV+ELFSGV+  +N D  ALWLLKQL+  +D KEFTR + +GS Y +  DSEEE
Sbjct: 361 PIEAFSRVQELFSGVDLAENGDDAALWLLKQLAAINDAKEFTRFRHKGSFYFNSPDSEEE 420

Query: 419 NNASSAGDSLDEAFDVFPEPLV-------DTKKLLLSNAGDS 453
            N SSA DS DE F+    P +       DT  + LS A +S
Sbjct: 421 TNTSSAADSSDEGFEAIQRPRIHIPFDNDDTDDITLSVAHES 462

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484593|ref|XP_003612584.1| Formin-like protein, partial [Medicago truncatula] gi|355513919|gb|AES95542.1| Formin-like protein, partial [Medicago truncatula]

 Score =  763 bits (1971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/485 (77%), Positives = 418/485 (86%), Gaps = 10/485 (2%)

Query: 1   MSLLSRFFYKRPPDGLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAF 60
           MSLLSRFFYKRPPDGLLEFI+RVYVFDSCFSTE +PDGMYQLYLHEI+TELHEEFP+S+F
Sbjct: 1   MSLLSRFFYKRPPDGLLEFIDRVYVFDSCFSTEALPDGMYQLYLHEIVTELHEEFPESSF 60

Query: 61  LAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQ 120
           LAFNFR+GEK+S FAEI+C+YDV V+DYP+ YEGCPLLP+SLIQHFLRVCE WLLLG+HQ
Sbjct: 61  LAFNFRDGEKRSNFAEIMCDYDVIVMDYPKNYEGCPLLPLSLIQHFLRVCESWLLLGNHQ 120

Query: 121 NVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGFLQLLSPLNPFPSQ 180
           NVIL H ERGGWPLLAFLLASLLIFR++HSGERRTLE+VHREAPKG LQLLSPLNP PSQ
Sbjct: 121 NVILFHCERGGWPLLAFLLASLLIFRRVHSGERRTLEMVHREAPKGLLQLLSPLNPQPSQ 180

Query: 181 LRYLQYVARRNITPEWPPPERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLS 240
           LRY+QYVARRNI PEWPPPERALSLDCVILR IP+FD+ NGCRP+ RIFGRN  S+GGLS
Sbjct: 181 LRYIQYVARRNIAPEWPPPERALSLDCVILRGIPSFDSSNGCRPMFRIFGRNLLSRGGLS 240

Query: 241 TQMIFSMSKKRKTLRHYRQADCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMFN 300
           TQMI++M KK K LRHY Q DCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMFN
Sbjct: 241 TQMIYNMHKK-KHLRHYSQVDCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMFN 299

Query: 301 TAFIRSNILMLNSENLDILWDSKERYPKGFRAEVLFGDVESISPPRAP--TSILNGEEKG 358
           TAFIRSNILMLN+ENLDILWDSKERYPKGFRAE     VE+ISP RAP  T+ILNGEEKG
Sbjct: 300 TAFIRSNILMLNTENLDILWDSKERYPKGFRAE-----VENISPQRAPTETAILNGEEKG 354

Query: 359 GLPIEAFSRVRELFSGVEWVDNSD--ALWLLKQLSVFSDVKEFTRMQDRGSSYTSPVDSE 416
           GLPIEAFSRV+ELFSGVEWVD+ D  A+WLL+QL+V ++ KEF+RMQ +GS ++SP DSE
Sbjct: 355 GLPIEAFSRVQELFSGVEWVDSGDAAAVWLLRQLTVLNEAKEFSRMQGKGSWFSSPADSE 414

Query: 417 EENNASSAGDSLDEAFDVFPEPLVDTKKLLLSNAGDSVTSLSKNEGPHDVILVSEPIDQV 476
           EENN SS  DS DEAFDV P+      KLL S+  D      +N G + V L S   DQ+
Sbjct: 415 EENNGSSIADSSDEAFDVTPKSSAVPSKLLTSDTPDLDHLAFENNGGNCVNLTSRMPDQL 474

Query: 477 SNETV 481
             + V
Sbjct: 475 LTDNV 479

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12321294|gb|AAG50715.1|AC079041_8 unknown protein [Arabidopsis thaliana]

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/429 (74%), Positives = 367/429 (85%), Gaps = 9/429 (2%)

Query: 34  VVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQYE 93
           V+ D +YQ++LHE++ +LHEEFP+S+FLAFNFREGEK+S FAE LCEYDVTVL+YPRQYE
Sbjct: 12  VLADSLYQIFLHEVINDLHEEFPESSFLAFNFREGEKKSVFAETLCEYDVTVLEYPRQYE 71

Query: 94  GCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGER 153
           GCP+LP+SLIQHFLRVCE WL  G+ Q+VILLH ERGGWPLLAF+LAS LIFRK+HSGER
Sbjct: 72  GCPMLPLSLIQHFLRVCESWLARGNRQDVILLHCERGGWPLLAFILASFLIFRKVHSGER 131

Query: 154 RTLEIVHREAPKGFLQLLSPLNPFPSQLRYLQYVARRNITPEWPPPERALSLDCVILRAI 213
           RTLEIVHREAPKG LQLLSPLNPFPSQLRYLQYVARRNI  EWPPPERALSLDCVI+R I
Sbjct: 132 RTLEIVHREAPKGLLQLLSPLNPFPSQLRYLQYVARRNINSEWPPPERALSLDCVIIRGI 191

Query: 214 PNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTLRHYRQADCDVIKIDIQCLV 273
           PNFD+Q+GCRPIIRIFGRN+ SK GLST+M++SMS K+K LRHYRQA+CDVIKIDIQC V
Sbjct: 192 PNFDSQHGCRPIIRIFGRNYSSKSGLSTEMVYSMSDKKKPLRHYRQAECDVIKIDIQCWV 251

Query: 274 QGDVVLECVHLDLDPEREVMMFRVMFNTAFIRSNILMLNSENLDILWDSKERYPKGFRAE 333
           QGDVVLECVH+DLDPEREVMMFRVMFNTAFIRSNILMLNS+NLDILW++K+ YPKGFRAE
Sbjct: 252 QGDVVLECVHMDLDPEREVMMFRVMFNTAFIRSNILMLNSDNLDILWEAKDHYPKGFRAE 311

Query: 334 VLFGDVESISPPRAPTSILNGEEKGGLPIEAFSRVRELFSGVEWVDNSD--ALWLLKQLS 391
           VLFG+VE+ SP + PT I+NG+E GGLPIEAFSRV+ELFSGV+  +N D  ALWLLKQL+
Sbjct: 312 VLFGEVENASPQKVPTPIVNGDETGGLPIEAFSRVQELFSGVDLAENGDDAALWLLKQLA 371

Query: 392 VFSDVKEFTRMQDRGSSYTSPVDSEEENNASSAGDSLDEAFDVFPEPLV-------DTKK 444
             +D KEFTR + +GS Y +  DSEEE N SSA DS DE F+    P +       DT  
Sbjct: 372 AINDAKEFTRFRHKGSFYFNSPDSEEETNTSSAADSSDEGFEAIQRPRIHIPFDNDDTDD 431

Query: 445 LLLSNAGDS 453
           + LS A +S
Sbjct: 432 ITLSVAHES 440

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508230|ref|XP_003522862.1| PREDICTED: uncharacterized protein LOC100809152 [Glycine max]

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/489 (71%), Positives = 402/489 (82%), Gaps = 5/489 (1%)

Query: 1   MSLLSRFFYKRPPDGLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAF 60
           MSLLSRFFYKRPPDGLLE  +RVYVFDSCFSTE +P+GMY LYL +I+++LHE+FP+S F
Sbjct: 1   MSLLSRFFYKRPPDGLLELSDRVYVFDSCFSTEALPEGMYSLYLRQIISDLHEDFPESTF 60

Query: 61  LAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQ 120
           LA NFR+G+ +S F+ +LC+ D TV+DYP+QYEGCPLLP+SL+ HFLR+C+    L D  
Sbjct: 61  LALNFRDGDHRSRFSRVLCDLDATVVDYPKQYEGCPLLPLSLLHHFLRLCDS--CLADPA 118

Query: 121 NVILLHSERGGWPLLAFLLASLLIFRKL-HSGERRTLEIVHREAPKGFLQLLSPLNPFPS 179
            +ILLH ERGGWPLLAFLLA+ L+FRK   +GERR LE+VH+EAPKG LQLLS LNP PS
Sbjct: 119 ALILLHCERGGWPLLAFLLAAFLVFRKAAQTGERRILEMVHKEAPKGLLQLLSALNPLPS 178

Query: 180 QLRYLQYVARRNITPEWPPPERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGL 239
           QLRY+QYVARRNI  EWPPPERALSLDCVILR IP FD  NGCRP+ RIFGRN  SKGGL
Sbjct: 179 QLRYVQYVARRNIGAEWPPPERALSLDCVILRGIPGFDGGNGCRPLFRIFGRNLLSKGGL 238

Query: 240 STQMIFSMSKKRKTLRHYRQADCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMF 299
           STQMI++M KK+K+LRHYRQADCDVIKIDIQCLVQGDVVLECVHLDLD EREVMMFRVMF
Sbjct: 239 STQMIYNMHKKKKSLRHYRQADCDVIKIDIQCLVQGDVVLECVHLDLDLEREVMMFRVMF 298

Query: 300 NTAFIRSNILMLNSENLDILWDSKERYPKGFRAEVLFGDVESISPPRAPTSILNGEEKGG 359
           NTAFIRSNILMLN+ENLDILWDSKERYPKGFRAEVLFG+VESISPPRA TSIL+GE KGG
Sbjct: 299 NTAFIRSNILMLNAENLDILWDSKERYPKGFRAEVLFGEVESISPPRAQTSILDGEVKGG 358

Query: 360 LPIEAFSRVRELFSGVEWVDNSD--ALWLLKQLSVFSDVKEFTRMQDRGSSYTSPVDSEE 417
           LPIEAFSRV+ELFSGVEWV++ D  A+WLLKQL+V +D KE +R Q RGS Y+SP DS+ 
Sbjct: 359 LPIEAFSRVQELFSGVEWVESGDAAAVWLLKQLTVLNDAKELSRFQGRGSWYSSPADSDS 418

Query: 418 ENNASSAGDSLDEAFDVFPEPLVDTKKLLLSNAGDSVTSLSKNEGPHDVILVSEPIDQVS 477
           ENN SS  DS DEAFDV P+   D  KLL+S+  D V    +N G   V L S   DQ  
Sbjct: 419 ENNESSTADSSDEAFDVIPKSYADPSKLLISDNPDLVHLAFENNGGDYVNLTSRTPDQSL 478

Query: 478 NETVLSSLH 486
            + V S  H
Sbjct: 479 TDNVSSPHH 487

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1052
TAIR|locus:2034471	1230	AFH14 "Formin Homology 14" [Ar	0.436	0.373	0.725	2.1e-254
TAIR|locus:2160329	722	AT5G07770 [Arabidopsis thalian	0.127	0.185	0.561	3.1e-33
TAIR|locus:2177801	464	FH19 "formin homolog 19" [Arab	0.129	0.293	0.456	5.9e-23
TAIR|locus:2009869	299	AT1G42980 "AT1G42980" [Arabido	0.065	0.230	0.685	1.2e-18
UNIPROTKB|E7ERH1	780	TNS1 "Tensin-1" [Homo sapiens	0.221	0.298	0.268	1.8e-10
UNIPROTKB|Q9GLM4	1715	TNS1 "Tensin-1" [Bos taurus (t	0.221	0.135	0.272	3.9e-10
UNIPROTKB|E1BNT5	1767	TNS1 "Tensin-1" [Bos taurus (t	0.221	0.131	0.272	4.1e-10
UNIPROTKB|E9PGF5	1714	TNS1 "Tensin-1" [Homo sapiens	0.221	0.135	0.268	5e-10
UNIPROTKB|E9PF55	1721	TNS1 "Tensin-1" [Homo sapiens	0.221	0.135	0.268	5.1e-10
UNIPROTKB|Q9HBL0	1735	TNS1 "Tensin-1" [Homo sapiens	0.221	0.134	0.268	5.1e-10

TAIR|locus:2034471 AFH14 "Formin Homology 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 1822 (646.4 bits), Expect = 2.1e-254, Sum P(3) = 2.1e-254
 Identities = 344/474 (72%), Positives = 394/474 (83%)

Query:     1 MSLLSRFFYKRPPDGLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAF 60
             MSLLSRFFYKRPPDGLLEF +RVYVFDSCF TEV+ D +YQ++LHE++ +LHEEFP+S+F
Sbjct:     1 MSLLSRFFYKRPPDGLLEFADRVYVFDSCFCTEVLADSLYQIFLHEVINDLHEEFPESSF 60

Query:    61 LAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQ 120
             LAFNFREGEK+S FAE LCEYDVTVL+YPRQYEGCP+LP+SLIQHFLRVCE WL  G+ Q
Sbjct:    61 LAFNFREGEKKSVFAETLCEYDVTVLEYPRQYEGCPMLPLSLIQHFLRVCESWLARGNRQ 120

Query:   121 NVILLHSERGGWPXXXXXXXXXXIFRKLHSGERRTLEIVHREAPKGFLQLLSPLNPFPSQ 180
             +VILLH ERGGWP          IFRK+HSGERRTLEIVHREAPKG LQLLSPLNPFPSQ
Sbjct:   121 DVILLHCERGGWPLLAFILASFLIFRKVHSGERRTLEIVHREAPKGLLQLLSPLNPFPSQ 180

Query:   181 LRYLQYVARRNITPEWPPPERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLS 240
             LRYLQYVARRNI  EWPPPERALSLDCVI+R IPNFD+Q+GCRPIIRIFGRN+ SK GLS
Sbjct:   181 LRYLQYVARRNINSEWPPPERALSLDCVIIRGIPNFDSQHGCRPIIRIFGRNYSSKSGLS 240

Query:   241 TQMIFSMSKKRKTLRHYRQADCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMFN 300
             T+M++SMS K+K LRHYRQA+CDVIKIDIQC VQGDVVLECVH+DLDPEREVMMFRVMFN
Sbjct:   241 TEMVYSMSDKKKPLRHYRQAECDVIKIDIQCWVQGDVVLECVHMDLDPEREVMMFRVMFN 300

Query:   301 TAFIRSNILMLNSENLDILWDSKERYPKGFRAEVLFGDVESISPPRAPTSILNGEEKGGL 360
             TAFIRSNILMLNS+NLDILW++K+ YPKGFRAEVLFG+VE+ SP + PT I+NG+E GGL
Sbjct:   301 TAFIRSNILMLNSDNLDILWEAKDHYPKGFRAEVLFGEVENASPQKVPTPIVNGDETGGL 360

Query:   361 PIEAFSRVRELFSGVEWVDNSD--ALWLLKQLSVFSDVKEFTRMQDRGSSYTSPVDSEEE 418
             PIEAFSRV+ELFSGV+  +N D  ALWLLKQL+  +D KEFTR + +GS Y +  DSEEE
Sbjct:   361 PIEAFSRVQELFSGVDLAENGDDAALWLLKQLAAINDAKEFTRFRHKGSFYFNSPDSEEE 420

Query:   419 NNASSAGDSLDEAFDVFPEPLV-------DTKKLLLSNAGDSVTSLSKNEGPHD 465
              N SSA DS DE F+    P +       DT  + LS A +S      +E PH+
Sbjct:   421 TNTSSAADSSDEGFEAIQRPRIHIPFDNDDTDDITLSVAHES------SEEPHE 468

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0016043 "cellular component organization" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0005819 "spindle" evidence=IDA

GO:0008017 "microtubule binding" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0009556 "microsporogenesis" evidence=IMP

GO:0009574 "preprophase band" evidence=IDA

GO:0051015 "actin filament binding" evidence=IDA

GO:0007015 "actin filament organization" evidence=RCA

TAIR|locus:2160329 AT5G07770 [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 3.1e-33, Sum P(2) = 3.1e-33
 Identities = 82/146 (56%), Positives = 105/146 (71%)

Query:   905 KKASLKPLHWVKVTRAMQGSLWADSQKQENHSR-APEIDISELESLFSAASDGSGTNKTG 963
             K++SLKPLHWVK+TRA+QGSLW + Q Q   S+ A E+D+ E+E+LFS  +      K  
Sbjct:   188 KRSSLKPLHWVKITRALQGSLWDELQIQYGESQTAIELDVPEIETLFSVGA------KPR 241

Query:   964 VRRGSNINKPEKVQLVELRRAYNCEIMLTKIKIPLPDMMNAVLALDSSALDIDQVENLIK 1023
              +      KPEKV L++L+RA N  + L  +K+PLPDMM AV+A+D S LD+DQ+ENLI+
Sbjct:   242 PKP-----KPEKVPLIDLKRANNTIVNLKILKMPLPDMMAAVMAMDESVLDVDQIENLIQ 296

Query:  1024 FCPTKEEMELLKNYAGDKVMLGKCEQ 1049
              CPTKEEMELLKNY GDK  LGK EQ
Sbjct:   297 LCPTKEEMELLKNYTGDKATLGKSEQ 322

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0016043 "cellular component organization" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0007015 "actin filament organization" evidence=RCA

TAIR|locus:2177801 FH19 "formin homolog 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 5.9e-23, P = 5.9e-23
 Identities = 73/160 (45%), Positives = 95/160 (59%)

Query:   901 SHAPK-KASLKPLHWVKVTRAMQGSLWADSQKQ--------ENHSRAPEIDISELESLFS 951
             S  PK K SLKPLHWVK TRA+ GSLW + Q++        E    A E+ +SE+E++FS
Sbjct:    69 SRPPKTKCSLKPLHWVKKTRALPGSLWDELQRRQECRDIEDEQILCAIELSVSEIETIFS 128

Query:   952 AASDGSGTNKTGVRRGSNINKPEKVQLVELRRAYNCEIMLTKIKIPLPDMMNAVLALDSS 1011
               +           +     +PEKV L++LRRA N EI L  + I LPDM+ A +A+D S
Sbjct:   129 LGA-----------KPKPKPEPEKVPLIDLRRATNTEIRLMLLNIRLPDMIAAAMAMDES 177

Query:  1012 ALD-IDQVENLIKFCPTKEEMELLKNYAGDKVMLGKCEQV 1050
              LD  DQ+ENLI   PTKE+M+ L  Y GDK   G CEQ+
Sbjct:   178 RLDDFDQIENLINLFPTKEDMKFLLTYTGDK---GNCEQL 214

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0007015 "actin filament organization" evidence=RCA

GO:0045010 "actin nucleation" evidence=IDA

GO:0051016 "barbed-end actin filament capping" evidence=IDA

TAIR|locus:2009869 AT1G42980 "AT1G42980" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 1.2e-18, P = 1.2e-18
 Identities = 48/70 (68%), Positives = 59/70 (84%)

Query:   984 AYNCEIMLTKIKIPLPDMMNAVLALDSSALDIDQVENLIKFCPTKEEMELLKNYAG-DKV 1042
             A NCE ML+KIKIPLPDM+NAVL LDSSA+ IDQ++NLIK C +KEEM+ L+N AG DK 
Sbjct:     2 ASNCEKMLSKIKIPLPDMLNAVLDLDSSAVIIDQIKNLIKICWSKEEMDRLRNSAGGDKE 61

Query:  1043 MLGKCEQVPG 1052
             +LGKCE++ G
Sbjct:    62 VLGKCEEIFG 71

GO:0003779 "actin binding" evidence=ISS

UNIPROTKB|E7ERH1 TNS1 "Tensin-1" [Homo sapiens (taxid:9606)]

 Score = 184 (69.8 bits), Expect = 1.8e-10, P = 1.8e-10
 Identities = 70/261 (26%), Positives = 126/261 (48%)

Query:    82 DVTVLDYPRQYE-GCPLLPMSLIQHFLRVC---EHWLLLGDHQNVILLHSERGGWPXXXX 137
             D+T L + +  E G P L    ++    +C   + WL    H NV++LH+ +G       
Sbjct:   191 DITKL-HAKVLEFGWPDLHTPALEKICSICKAMDTWLNADPH-NVVVLHN-KGNRGRIGV 247

Query:   138 XXXXXXIFRKLHSGERRTLEIVHREAPKGFLQ-LLSPLNPFPSQLRYLQYVARRNITPEW 196
                    +  + +   + L+   R A K F +  + P+   PSQ RY+ Y +   ++   
Sbjct:   248 VIAAYMHYSNISASADQALD---RFAMKRFYEDKIVPIGQ-PSQRRYVHYFSGL-LSGSI 302

Query:   197 PPPERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTLRH 256
                 + L L  VI+  IPNF+++ GCRP +RI+    ++   + T  I+++    +T   
Sbjct:   303 KMNNKPLFLHHVIMHGIPNFESKGGCRPFLRIY----QAMQPVYTSGIYNIPGDSQT--- 355

Query:   257 YRQADCDVIKIDIQCLVQGDVVLECVHLDL-DPEREVMMFRVMFNTAFIRSNILMLNSEN 315
                + C  I I+   L++GD++L+C H     P R+V+ FRV F+T  I    ++   E+
Sbjct:   356 ---SVC--ITIEPGLLLKGDILLKCYHKKFRSPARDVI-FRVQFHTCAIHDLGVVFGKED 409

Query:   316 LDILWDSKERYPKGFRAEVLF 336
             LD  +   +R+P+  + E +F
Sbjct:   410 LDDAFKD-DRFPEYGKVEFVF 429

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005925 "focal adhesion" evidence=IDA

UNIPROTKB|Q9GLM4 TNS1 "Tensin-1" [Bos taurus (taxid:9913)]

 Score = 185 (70.2 bits), Expect = 3.9e-10, P = 3.9e-10
 Identities = 71/261 (27%), Positives = 125/261 (47%)

Query:    82 DVTVLDYPRQYE-GCPLLPMSLIQHFLRVC---EHWLLLGDHQNVILLHSERGGWPXXXX 137
             D+T L + +  E G P L    ++    VC   + WL    H NV++LH+ +G       
Sbjct:    66 DITKL-HAKVLEFGWPDLHTPALEKICSVCKAMDTWLNADPH-NVVVLHN-KGNRGRIGV 122

Query:   138 XXXXXXIFRKLHSGERRTLEIVHREAPKGFLQ-LLSPLNPFPSQLRYLQYVARRNITPEW 196
                    +  + +     L+   R A K F +  + P+   PSQ RY+ Y +   ++   
Sbjct:   123 VIAAYMHYSNISASADHALD---RFAMKRFYEDKIVPIGQ-PSQRRYVHYFSGL-LSGSI 177

Query:   197 PPPERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTLRH 256
                 + L L  VI+  IPNF+++ GCRP +RI+    ++   + T  I+++    +T   
Sbjct:   178 KMNNKPLFLHHVIMHGIPNFESKGGCRPFLRIY----QAMQPVYTSGIYNVQGDSQT--- 230

Query:   257 YRQADCDVIKIDIQCLVQGDVVLECVHLDL-DPEREVMMFRVMFNTAFIRSNILMLNSEN 315
                + C  I I+   L++GD++L+C H     P R+V+ FRV F+T  I    ++   E+
Sbjct:   231 ---SIC--ITIEPGLLLKGDILLKCYHKKFRSPARDVI-FRVQFHTCAIHDLGVVFGKED 284

Query:   316 LDILWDSKERYPKGFRAEVLF 336
             LD  +   +R+P+  + E +F
Sbjct:   285 LDDAFKD-DRFPEYGKVEFVF 304

GO:0005925 "focal adhesion" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|E1BNT5 TNS1 "Tensin-1" [Bos taurus (taxid:9913)]

 Score = 185 (70.2 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 71/261 (27%), Positives = 126/261 (48%)

Query:    82 DVTVLDYPRQYE-GCPLLPMSLIQHFLRVC---EHWLLLGDHQNVILLHSERGGWPXXXX 137
             D+T L + +  E G P L    ++    VC   + WL    H NV++LH+ +G       
Sbjct:   115 DITKL-HAKVLEFGWPDLHTPALEKICSVCKAMDTWLNADPH-NVVVLHN-KGNRGRIGV 171

Query:   138 XXXXXXIFRKLHSGERRTLEIVHREAPKGFLQ-LLSPLNPFPSQLRYLQYVARRNITPEW 196
                    +  + +   + L+   R A K F +  + P+   PSQ RY+ Y +   ++   
Sbjct:   172 VIAAYMHYSNISASADQALD---RFAMKRFYEDKIVPIGQ-PSQRRYVHYFSGL-LSGSI 226

Query:   197 PPPERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTLRH 256
                 + L L  VI+  IPNF+++ GCRP +RI+    ++   + T  I+++    +T   
Sbjct:   227 KMNNKPLFLHHVIMHGIPNFESKGGCRPFLRIY----QAMQPVYTSGIYNVQGDSQT--- 279

Query:   257 YRQADCDVIKIDIQCLVQGDVVLECVHLDL-DPEREVMMFRVMFNTAFIRSNILMLNSEN 315
                + C  I I+   L++GD++L+C H     P R+V+ FRV F+T  I    ++   E+
Sbjct:   280 ---SIC--ITIEPGLLLKGDILLKCYHKKFRSPTRDVI-FRVQFHTCAIHDLGVVFGKED 333

Query:   316 LDILWDSKERYPKGFRAEVLF 336
             LD  +   +R+P+  + E +F
Sbjct:   334 LDDAFRD-DRFPEYGKVEFVF 353

GO:0010761 "fibroblast migration" evidence=IEA

GO:0007044 "cell-substrate junction assembly" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

UNIPROTKB|E9PGF5 TNS1 "Tensin-1" [Homo sapiens (taxid:9606)]

 Score = 184 (69.8 bits), Expect = 5.0e-10, P = 5.0e-10
 Identities = 70/261 (26%), Positives = 126/261 (48%)

Query:    82 DVTVLDYPRQYE-GCPLLPMSLIQHFLRVC---EHWLLLGDHQNVILLHSERGGWPXXXX 137
             D+T L + +  E G P L    ++    +C   + WL    H NV++LH+ +G       
Sbjct:    66 DITKL-HAKVLEFGWPDLHTPALEKICSICKAMDTWLNADPH-NVVVLHN-KGNRGRIGV 122

Query:   138 XXXXXXIFRKLHSGERRTLEIVHREAPKGFLQ-LLSPLNPFPSQLRYLQYVARRNITPEW 196
                    +  + +   + L+   R A K F +  + P+   PSQ RY+ Y +   ++   
Sbjct:   123 VIAAYMHYSNISASADQALD---RFAMKRFYEDKIVPIGQ-PSQRRYVHYFSGL-LSGSI 177

Query:   197 PPPERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTLRH 256
                 + L L  VI+  IPNF+++ GCRP +RI+    ++   + T  I+++    +T   
Sbjct:   178 KMNNKPLFLHHVIMHGIPNFESKGGCRPFLRIY----QAMQPVYTSGIYNIPGDSQT--- 230

Query:   257 YRQADCDVIKIDIQCLVQGDVVLECVHLDL-DPEREVMMFRVMFNTAFIRSNILMLNSEN 315
                + C  I I+   L++GD++L+C H     P R+V+ FRV F+T  I    ++   E+
Sbjct:   231 ---SVC--ITIEPGLLLKGDILLKCYHKKFRSPARDVI-FRVQFHTCAIHDLGVVFGKED 284

Query:   316 LDILWDSKERYPKGFRAEVLF 336
             LD  +   +R+P+  + E +F
Sbjct:   285 LDDAFKD-DRFPEYGKVEFVF 304

GO:0005925 "focal adhesion" evidence=IDA

UNIPROTKB|E9PF55 TNS1 "Tensin-1" [Homo sapiens (taxid:9606)]

 Score = 184 (69.8 bits), Expect = 5.1e-10, P = 5.1e-10
 Identities = 70/261 (26%), Positives = 126/261 (48%)

Query:    82 DVTVLDYPRQYE-GCPLLPMSLIQHFLRVC---EHWLLLGDHQNVILLHSERGGWPXXXX 137
             D+T L + +  E G P L    ++    +C   + WL    H NV++LH+ +G       
Sbjct:    66 DITKL-HAKVLEFGWPDLHTPALEKICSICKAMDTWLNADPH-NVVVLHN-KGNRGRIGV 122

Query:   138 XXXXXXIFRKLHSGERRTLEIVHREAPKGFLQ-LLSPLNPFPSQLRYLQYVARRNITPEW 196
                    +  + +   + L+   R A K F +  + P+   PSQ RY+ Y +   ++   
Sbjct:   123 VIAAYMHYSNISASADQALD---RFAMKRFYEDKIVPIGQ-PSQRRYVHYFSGL-LSGSI 177

Query:   197 PPPERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTLRH 256
                 + L L  VI+  IPNF+++ GCRP +RI+    ++   + T  I+++    +T   
Sbjct:   178 KMNNKPLFLHHVIMHGIPNFESKGGCRPFLRIY----QAMQPVYTSGIYNIPGDSQT--- 230

Query:   257 YRQADCDVIKIDIQCLVQGDVVLECVHLDL-DPEREVMMFRVMFNTAFIRSNILMLNSEN 315
                + C  I I+   L++GD++L+C H     P R+V+ FRV F+T  I    ++   E+
Sbjct:   231 ---SVC--ITIEPGLLLKGDILLKCYHKKFRSPARDVI-FRVQFHTCAIHDLGVVFGKED 284

Query:   316 LDILWDSKERYPKGFRAEVLF 336
             LD  +   +R+P+  + E +F
Sbjct:   285 LDDAFKD-DRFPEYGKVEFVF 304

GO:0005925 "focal adhesion" evidence=IDA

UNIPROTKB|Q9HBL0 TNS1 "Tensin-1" [Homo sapiens (taxid:9606)]

 Score = 184 (69.8 bits), Expect = 5.1e-10, P = 5.1e-10
 Identities = 70/261 (26%), Positives = 126/261 (48%)

Query:    82 DVTVLDYPRQYE-GCPLLPMSLIQHFLRVC---EHWLLLGDHQNVILLHSERGGWPXXXX 137
             D+T L + +  E G P L    ++    +C   + WL    H NV++LH+ +G       
Sbjct:    66 DITKL-HAKVLEFGWPDLHTPALEKICSICKAMDTWLNADPH-NVVVLHN-KGNRGRIGV 122

Query:   138 XXXXXXIFRKLHSGERRTLEIVHREAPKGFLQ-LLSPLNPFPSQLRYLQYVARRNITPEW 196
                    +  + +   + L+   R A K F +  + P+   PSQ RY+ Y +   ++   
Sbjct:   123 VIAAYMHYSNISASADQALD---RFAMKRFYEDKIVPIGQ-PSQRRYVHYFSGL-LSGSI 177

Query:   197 PPPERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTLRH 256
                 + L L  VI+  IPNF+++ GCRP +RI+    ++   + T  I+++    +T   
Sbjct:   178 KMNNKPLFLHHVIMHGIPNFESKGGCRPFLRIY----QAMQPVYTSGIYNIPGDSQT--- 230

Query:   257 YRQADCDVIKIDIQCLVQGDVVLECVHLDL-DPEREVMMFRVMFNTAFIRSNILMLNSEN 315
                + C  I I+   L++GD++L+C H     P R+V+ FRV F+T  I    ++   E+
Sbjct:   231 ---SVC--ITIEPGLLLKGDILLKCYHKKFRSPARDVI-FRVQFHTCAIHDLGVVFGKED 284

Query:   316 LDILWDSKERYPKGFRAEVLF 336
             LD  +   +R+P+  + E +F
Sbjct:   285 LDDAFKD-DRFPEYGKVEFVF 304

GO:0003779 "actin binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007044 "cell-substrate junction assembly" evidence=IEA

GO:0010761 "fibroblast migration" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005925 "focal adhesion" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C6S1	FH14_ARATH	No assigned EC number	0.7554	0.4306	0.3682	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1052
pfam10409	129	pfam10409, PTEN_C2, C2 domain of PTEN tumour-suppr	2e-43
pfam02181	372	pfam02181, FH2, Formin Homology 2 Domain	5e-43
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-36
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	5e-33
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-29
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-29
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-27
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-25
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-25
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-23
smart00498	392	smart00498, FH2, Formin Homology 2 Domain	1e-21
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	5e-21
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	8e-20
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	1e-19
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	8e-18
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-14
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-14
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	3e-14
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	5e-14
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-13
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-13
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-13
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	4e-13
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	4e-13
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	4e-13
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-13
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	6e-13
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	2e-12
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	4e-12
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	3e-11
pfam04652	315	pfam04652, DUF605, Vta1 like	4e-11
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	5e-11
pfam04652	315	pfam04652, DUF605, Vta1 like	8e-11
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	8e-11
pfam04652	315	pfam04652, DUF605, Vta1 like	1e-10
pfam04652	315	pfam04652, DUF605, Vta1 like	1e-10
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	1e-10
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-10
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-10
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	2e-10
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	2e-10
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	3e-10
pfam04652	315	pfam04652, DUF605, Vta1 like	3e-10
pfam04652	315	pfam04652, DUF605, Vta1 like	4e-10
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	5e-10
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	6e-10
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-10
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	1e-09
pfam04652	315	pfam04652, DUF605, Vta1 like	1e-09
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	1e-09
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	2e-09
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-09
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-09
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	3e-09
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-09
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	4e-09
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	5e-09
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	5e-09
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-08
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	1e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-08
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-08
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-08
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-08
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	2e-08
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-08
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	2e-08
pfam05109	830	pfam05109, Herpes_BLLF1, Herpes virus major outer	2e-08
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-08
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	3e-08
pfam04652	315	pfam04652, DUF605, Vta1 like	3e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-08
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	4e-08
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	4e-08
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	4e-08
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-08
pfam04652	315	pfam04652, DUF605, Vta1 like	5e-08
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	5e-08
PHA03132	580	PHA03132, PHA03132, thymidine kinase; Provisional	6e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	9e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-07
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-07
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-07
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	2e-07
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-07
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	4e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-07
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	4e-07
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	4e-07
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	4e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	4e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-07
PHA03132	580	PHA03132, PHA03132, thymidine kinase; Provisional	5e-07
PRK08691	709	PRK08691, PRK08691, DNA polymerase III subunits ga	5e-07
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	7e-07
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	9e-07
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	9e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-06
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	1e-06
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	1e-06
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	1e-06
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	1e-06
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	1e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-06
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	2e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-06
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	2e-06
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	3e-06
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	4e-06
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	4e-06
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	4e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-06
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	4e-06
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	5e-06
pfam05109	830	pfam05109, Herpes_BLLF1, Herpes virus major outer	6e-06
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	6e-06
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	6e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	7e-06
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	7e-06
pfam05109	830	pfam05109, Herpes_BLLF1, Herpes virus major outer	7e-06
pfam05109	830	pfam05109, Herpes_BLLF1, Herpes virus major outer	7e-06
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	7e-06
PHA03132	580	PHA03132, PHA03132, thymidine kinase; Provisional	7e-06
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	7e-06
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	7e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	8e-06
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	8e-06
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	8e-06
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	9e-06
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	9e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-05
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	1e-05
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	1e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-05
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	1e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-05
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	2e-05
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	2e-05
pfam06070	777	pfam06070, Herpes_UL32, Herpesvirus large structur	2e-05
pfam05109	830	pfam05109, Herpes_BLLF1, Herpes virus major outer	3e-05
PHA03132	580	PHA03132, PHA03132, thymidine kinase; Provisional	3e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-05
PRK08691	709	PRK08691, PRK08691, DNA polymerase III subunits ga	3e-05
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	3e-05
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	3e-05
pfam06003	264	pfam06003, SMN, Survival motor neuron protein (SMN	3e-05
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	3e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	4e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	4e-05
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	4e-05
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	4e-05
pfam05109	830	pfam05109, Herpes_BLLF1, Herpes virus major outer	4e-05
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	4e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-05
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	4e-05
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	5e-05
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	5e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	6e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	6e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	6e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	6e-05
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	6e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	8e-05
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	9e-05
PHA03377	1000	PHA03377, PHA03377, EBNA-3C; Provisional	9e-05
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	9e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-04
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	1e-04
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	1e-04
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	1e-04
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	1e-04
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	1e-04
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	1e-04
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	2e-04
pfam05109	830	pfam05109, Herpes_BLLF1, Herpes virus major outer	2e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-04
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	2e-04
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	2e-04
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	2e-04
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	2e-04
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	2e-04
PHA03377	1000	PHA03377, PHA03377, EBNA-3C; Provisional	2e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	2e-04
PRK11901	327	PRK11901, PRK11901, hypothetical protein; Reviewed	2e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	3e-04
pfam04652	315	pfam04652, DUF605, Vta1 like	3e-04
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	3e-04
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	3e-04
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	3e-04
pfam06070	777	pfam06070, Herpes_UL32, Herpesvirus large structur	3e-04
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	3e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	3e-04
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	4e-04
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	4e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	4e-04
pfam08580	626	pfam08580, KAR9, Yeast cortical protein KAR9	4e-04
PRK12799	421	PRK12799, motB, flagellar motor protein MotB; Revi	4e-04
PRK12727	559	PRK12727, PRK12727, flagellar biosynthesis regulat	4e-04
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	4e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-04
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	5e-04
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	5e-04
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	5e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	6e-04
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	6e-04
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	6e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	6e-04
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	6e-04
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	6e-04
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	7e-04
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	7e-04
PHA03377	1000	PHA03377, PHA03377, EBNA-3C; Provisional	7e-04
TIGR01645	612	TIGR01645, half-pint, poly-U binding splicing fact	7e-04
pfam03326	500	pfam03326, Herpes_TAF50, Herpesvirus transcription	7e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	8e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	8e-04
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	8e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	9e-04
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	9e-04
pfam05110	1154	pfam05110, AF-4, AF-4 proto-oncoprotein	9e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.001
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	0.001
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.001
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.001
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.001
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.001
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	0.001
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	0.001
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	0.001
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	0.001
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	0.001
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	0.001
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	0.001
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	0.001
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	0.001
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	0.001
pfam05110	1154	pfam05110, AF-4, AF-4 proto-oncoprotein	0.001
pfam09507	427	pfam09507, CDC27, DNA polymerase subunit Cdc27	0.001
PHA03201	318	PHA03201, PHA03201, uracil DNA glycosylase; Provis	0.001
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	0.001
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	0.001
pfam10428	419	pfam10428, SOG2, RAM signalling pathway protein	0.001
pfam10428	419	pfam10428, SOG2, RAM signalling pathway protein	0.001
pfam13254	414	pfam13254, DUF4045, Domain of unknown function (DU	0.001
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.002
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.002
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	0.002
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.002
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	0.002
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	0.002
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	0.002
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	0.002
pfam03251	458	pfam03251, Tymo_45kd_70kd, Tymovirus 45/70Kd prote	0.002
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	0.003
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.003
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.003
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	0.003
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	0.003
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	0.003
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	0.003
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	0.003
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	0.003
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	0.003
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	0.003
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	0.003
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	0.003
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	0.003
pfam10428	419	pfam10428, SOG2, RAM signalling pathway protein	0.003
TIGR01347	403	TIGR01347, sucB, 2-oxoglutarate dehydrogenase comp	0.003
pfam06409	350	pfam06409, NPIP, Nuclear pore complex interacting	0.003
pfam05539	408	pfam05539, Pneumo_att_G, Pneumovirinae attachment	0.003
pfam01044	850	pfam01044, Vinculin, Vinculin family	0.003
pfam12737	418	pfam12737, Mating_C, C-terminal domain of homeodom	0.003
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	0.004
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.004
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	0.004
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	0.004
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	0.004
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	0.004
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	0.004
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	0.004
pfam08580	626	pfam08580, KAR9, Yeast cortical protein KAR9	0.004
PRK12727	559	PRK12727, PRK12727, flagellar biosynthesis regulat	0.004
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	0.004
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	0.004
TIGR01645	612	TIGR01645, half-pint, poly-U binding splicing fact	0.004
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	0.004
PRK06305	451	PRK06305, PRK06305, DNA polymerase III subunits ga	0.004
PLN02712	667	PLN02712, PLN02712, arogenate dehydrogenase	0.004

>gnl|CDD|220736 pfam10409, PTEN_C2, C2 domain of PTEN tumour-suppressor protein

 Score =  153 bits (388), Expect = 2e-43
 Identities = 53/141 (37%), Positives = 73/141 (51%), Gaps = 12/141 (8%)

Query: 198 PPERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTLRHY 257
           PP + L L  +IL  IPNF +  GCRP IRI+  +         + + S SKK + L+ Y
Sbjct: 1   PPPKPLFLKSIILHGIPNFKSGGGCRPYIRIYNND---------KKV-STSKKYEILKKY 50

Query: 258 RQADCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMFNTAFIRSNILMLNSENLD 317
           +Q DC +I       VQGDV++E  H       E  MFR  FNT+FI  N L      LD
Sbjct: 51  QQKDC-IILFPKGLPVQGDVLIEFYHKG-LKLSEEKMFRFWFNTSFIEDNRLTFPKNELD 108

Query: 318 ILWDSKERYPKGFRAEVLFGD 338
                K+R+P  F+ E++F +
Sbjct: 109 KADKDKKRFPPDFKVELVFSE 129

This is the C2 domain-like domain, in greek key form, of the PTEN protein, phosphatidyl-inositol triphosphate phosphatase, and it is the C-terminus. This domain may well include a CBR3 loop which means it plays a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc (pfam00782) suggesting that the C2 domain productively positions the catalytic part of the protein onto the membrane. Length = 129

>gnl|CDD|216919 pfam02181, FH2, Formin Homology 2 Domain

 Score =  160 bits (408), Expect = 5e-43
 Identities = 54/147 (36%), Positives = 92/147 (62%), Gaps = 5/147 (3%)

Query: 904  PKKASLKPLHWVKVTRA-MQGSLWADSQKQENHSRAPEIDISELESLFSAASDGSGTNKT 962
              K  LKPLHW KV  A  +G++W +  ++       ++D+SELE LFSA +    + K+
Sbjct: 6    KPKKKLKPLHWDKVNPAQDRGTVWDELDEESFEK---DLDLSELEELFSAKAKKKKSKKS 62

Query: 963  GVRRGSNINKPEKVQLVELRRAYNCEIMLTKIKIPLPDMMNAVLALDSSALDIDQVENLI 1022
              ++ S+  K +++ +++ +R+ N  I+L K+K+P  +++ A+L +D S L ++ +ENL+
Sbjct: 63   E-KKSSSKKKKKEISVLDPKRSQNIAILLRKLKLPPEEIVQAILEMDESVLGLELLENLL 121

Query: 1023 KFCPTKEEMELLKNYAGDKVMLGKCEQ 1049
            K  PTKEE++ LK Y GD   LG+ EQ
Sbjct: 122  KMAPTKEELKKLKEYKGDPSKLGRAEQ 148

Length = 372

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score =  149 bits (378), Expect = 3e-36
 Identities = 103/432 (23%), Positives = 139/432 (32%), Gaps = 38/432 (8%)

Query: 487  QQSLVLTEGNPPCFPPSPSSPQSIAP--TPPLPPHSSPASASGVIPLPMSAPPPSPPPPP 544
            Q +      +    P  P+ P  + P    P PP  SP+ A+           P P  P 
Sbjct: 2594 QSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPR 2653

Query: 545  PPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPP 604
              P P   +    +         SS           P      S  D  P        PP
Sbjct: 2654 DDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPP--------PP 2705

Query: 605  PPPPPPPPPAFSGKDSSAVRSTSSIVPPPPP--PPPPPSFYGKGSSTMPSTSSIGPPPPP 662
            P P P P    S        + +    P  P  P PP           P+  +    P  
Sbjct: 2706 PTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAV---------PAGPATPGGPAR 2756

Query: 663  PPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPP 722
            P  PP+ +G  + + P+  + G P     P  +     S+  S  S  P P  P  PP  
Sbjct: 2757 PARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVA-----SLSESRES-LPSPWDPADPPAA 2810

Query: 723  AAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKIT---NKLQLAP 779
               P ++    ++P  P P   S+QP+    PPPPP PPPP     G +    +  +  P
Sbjct: 2811 VLAPAAALPPAASPAGPLPPPTSAQPT---APPPPPGPPPPSLPLGGSVAPGGDVRRRPP 2867

Query: 780  TSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPP 839
            +  PA  P  P  P     + P       S    P    RPP P  P  P       PPP
Sbjct: 2868 SRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPP 2927

Query: 840  PPAPKLPTAPSPPSRGVMPSPPPPPGVKSSSVPPPPLPSVGKGKVTSGPASHGRGRLNSG 899
             P P  P  P P      P   P      +  P   +P    G +  G  +  R R+   
Sbjct: 2928 QPQPPPPPPPRPQ-----PPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQP 2982

Query: 900  VSHAPKKASLKP 911
                   AS  P
Sbjct: 2983 APSREAPASSTP 2994

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score =  138 bits (350), Expect = 5e-33
 Identities = 97/387 (25%), Positives = 122/387 (31%), Gaps = 52/387 (13%)

Query: 512  PTPPLPPHSSPASASGVIPLPMSAPPPS-------------PPPPPPPPLPSSTNNSFLS 558
            P PPLPP + PA+    +P P  AP PS             PP    P  P         
Sbjct: 2551 PPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRG 2610

Query: 559  PPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGK 618
            P PP P  P            P PPPP  S     P P      PPP  P   P    G+
Sbjct: 2611 PAPPSPLPPD--------THAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAP--GR 2660

Query: 619  DSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLP 678
             S   R+           PP          T+ S +S+  PPPPPP P        S+ P
Sbjct: 2661 VSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATP 2720

Query: 679  STSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPH 738
                  +     P  P+                P PP  P  P   G  +  A    PP 
Sbjct: 2721 LPPGPAAARQASPALPA---------------APAPPAVPAGPATPGGPARPA---RPPT 2762

Query: 739  PSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCST 798
             +     + P+  P   PP     P  +SL +    L               P       
Sbjct: 2763 TAGPPAPAPPA-APAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPA 2821

Query: 799  SIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLP--------PPPPAPKLPTAPS 850
            + P  P PPP+        P P PPPP L     G+V P        P       P AP+
Sbjct: 2822 ASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLG--GSVAPGGDVRRRPPSRSPAAKPAAPA 2879

Query: 851  PPSRGVMPSPPPPPGVKSSSVPPPPLP 877
             P    +  P      +S ++PP    
Sbjct: 2880 RPPVRRLARPAVSRSTESFALPPDQPE 2906

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score =  127 bits (321), Expect = 2e-29
 Identities = 96/405 (23%), Positives = 124/405 (30%), Gaps = 44/405 (10%)

Query: 460  NEGPHDVILVSEPIDQVSNETVLSSLHQQSLVLTEGNPPCFPPSPSSPQSIAPTPPLPPH 519
            NE          P ++  ++     + +       G        P  P+  A  P +   
Sbjct: 2636 NEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSL 2695

Query: 520  SSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPP 579
            +S A      P P  AP       P PP P++   +  + P  P P            P 
Sbjct: 2696 TSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPA 2755

Query: 580  PPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPP 639
             P  PP  +       P+  + GPP     P   + S    S         PP     P 
Sbjct: 2756 RPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPA 2815

Query: 640  PSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGR 699
             +     S   P        P  PPP                      PP PPPPS    
Sbjct: 2816 AALPPAASPAGPLPPPTSAQPTAPPP----------------------PPGPPPPSLPLG 2853

Query: 700  SSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPP 759
             S+ P    +   PP   P   PAA        L+ P     T   + P   P  PP P 
Sbjct: 2854 GSVAPGGDVR-RRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQ 2912

Query: 760  PPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPR 819
             PPPP         + Q  P  QP  PPPPPP P+         PP  P+        P 
Sbjct: 2913 APPPP-------QPQPQPPPPPQPQPPPPPPPRPQ---------PPLAPTTDPAGAGEPS 2956

Query: 820  PPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPPP 864
               P P L     GA++P     P+       PSR    S  PP 
Sbjct: 2957 GAVPQPWL-----GALVPGRVAVPRFRVPQPAPSREAPASSTPPL 2996

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score =  127 bits (320), Expect = 2e-29
 Identities = 98/401 (24%), Positives = 128/401 (31%), Gaps = 35/401 (8%)

Query: 511  APTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPPPPPPP----- 565
            AP    P  +    A+G  P P    PP P  PP P   +           P  P     
Sbjct: 2477 APVYRRPAEARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPRMLTW 2536

Query: 566  ---LPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPP-----------PPPPP 611
               L    +++   PPPP PP    ++ D S  P   +  P  P           PP   
Sbjct: 2537 IRGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSA 2596

Query: 612  PPAFSGKDSSAVRSTSSIVPPPP--PPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSF 669
             P     D    R  +   P PP    P PP      ++  P        PPP  P    
Sbjct: 2597 RPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDP 2656

Query: 670  SGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSS 729
            +  G  S P  +           PP    R +  P+  S      PPPPPP P   P++ 
Sbjct: 2657 AP-GRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHAL 2715

Query: 730  KALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPP 789
             +    PP P+   ++S        P  P  P PP    G  T      P   P    PP
Sbjct: 2716 VSATPLPPGPAAARQAS--------PALPAAPAPPAVPAGPATPGGPARPARPPTTAGPP 2767

Query: 790  PPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAP 849
             P P +   + P      P++     +    P P  P  P  +        P    P  P
Sbjct: 2768 APAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGP 2827

Query: 850  SPPSRGVMPSPPPPPGVKSSSVPPPPLPSVGKGKVTSGPAS 890
             PP     P+ PPPP       PPPP   +G      G   
Sbjct: 2828 LPPPTSAQPTAPPPP-----PGPPPPSLPLGGSVAPGGDVR 2863

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score =  121 bits (305), Expect = 1e-27
 Identities = 104/437 (23%), Positives = 134/437 (30%), Gaps = 66/437 (15%)

Query: 501  PPSPSSPQSIAPTPPLPPH--SSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLS 558
             P  +     A     PP      A+   V  L   A PP PPPP P P P +  ++   
Sbjct: 2663 RPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPP-PPPPTPEPAPHALVSATPL 2721

Query: 559  PPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPP-----PPPP 613
            PP P     +S        PP  P  P        P    T+ GPP P PP      PP 
Sbjct: 2722 PPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPR 2781

Query: 614  AFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKG 673
              +    +++  +   +P P  P  PP+     ++ +P  +S   P PPP          
Sbjct: 2782 RLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPT--------- 2832

Query: 674  SSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALL 733
                 S      PPPP PPPPS     S+ P    +  PP   P   P A      + L 
Sbjct: 2833 -----SAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLA 2887

Query: 734  SAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLP 793
                  S  S +  P     PP P  PPPP P        + Q  P   P   PP  P  
Sbjct: 2888 RPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTT 2947

Query: 794  KSCSTSIPMAPPPPPSIGCK------------PINAPRPPPPPPPLGPARSGAVL----- 836
                   P    P P +G              P  AP    P     P    ++      
Sbjct: 2948 DPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSSW 3007

Query: 837  ---------PPPPPAPKLPTAPSP---------------PSRGVMPSP---PPPPGVKSS 869
                       PPP     T   P                 R  + +    PP P    +
Sbjct: 3008 ASSLALHEETDPPPVSLKQTLWPPDDTEDSDADSLFDSDSERSDLEALDPLPPEPHDPFA 3067

Query: 870  SVPPPPLPSVGKGKVTS 886
              P P  P  G  +  S
Sbjct: 3068 HEPDPATPEAGARESPS 3084

Length = 3151

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score =  113 bits (285), Expect = 2e-25
 Identities = 92/380 (24%), Positives = 120/380 (31%), Gaps = 31/380 (8%)

Query: 501 PPSPSSPQSIAPTPPLPPHS-SPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSP 559
                S  ++AP  P    S +P   S   P P + PP SPPP P P L           
Sbjct: 86  STPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPG 145

Query: 560 PPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPP--PAFSG 617
           PPP    P++  +                +      P ET+R P  PP  PPP  P  + 
Sbjct: 146 PPPAASPPAAGAS---PAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAA 202

Query: 618 KDSSAVRSTSSIVPPPPPPPPPP--SFYGKGSSTMPSTSSIGPPPP-------PPPPPPS 668
                 RS+        P P P   +    G+S+  S+SS             P P P  
Sbjct: 203 SPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAP 262

Query: 669 FSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNS 728
            +        S  +  S  P P    S     S  PS +S G  P P  P    ++  + 
Sbjct: 263 ITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSR 322

Query: 729 SKAL---LSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAV 785
             +     S+       + S  PS    P P  PPPP  PSS                  
Sbjct: 323 ESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSS----------PRKRPRPS 372

Query: 786 PPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKL 845
             P  P   +   +   A         +     R P   P   P  +GA          L
Sbjct: 373 RAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYARYPL 432

Query: 846 PTAPSPPSRGVMPSPPPPPG 865
            T    P  G   SPPPPPG
Sbjct: 433 LTPSGEPWPG---SPPPPPG 449

Length = 1352

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score =  112 bits (282), Expect = 6e-25
 Identities = 101/431 (23%), Positives = 125/431 (29%), Gaps = 89/431 (20%)

Query: 497  PPCFPPSPSSPQSIA--PTPPLPPHSSPASASGVIPLPM------SAPPPSPPPPPPPPL 548
                 P+  S  S+A  P PP  P  +P +     PLP        A P  P  P PP +
Sbjct: 2685 RRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAV 2744

Query: 549  PSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPP 608
            P+          P  PP  +          P   PP   +    + +       P P  P
Sbjct: 2745 PAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDP 2804

Query: 609  PPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPS 668
              PP A     ++   + S   P PPP    P+                PPPPP PPPPS
Sbjct: 2805 ADPPAAVLAPAAALPPAASPAGPLPPPTSAQPT---------------APPPPPGPPPPS 2849

Query: 669  FSGKGSSS--------LPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPP 720
                GS +         PS S    P  P  PP     R ++  ST S   PP  P  PP
Sbjct: 2850 LPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPP 2909

Query: 721  PPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKL----- 775
             P A P   +     PP P P      P    PP  P   P       G +         
Sbjct: 2910 QPQA-PPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALV 2968

Query: 776  --------QLAPTSQPAVPPPPPPLPKSCSTSIPM-------------APPPPPSI---- 810
                       P   P+   P    P     S+                 PPP S+    
Sbjct: 2969 PGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASSLALHEETDPPPVSLKQTL 3028

Query: 811  -------------------GCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSP 851
                                   + A  P PP P    A          P P  P A + 
Sbjct: 3029 WPPDDTEDSDADSLFDSDSERSDLEALDPLPPEPHDPFAH--------EPDPATPEAGAR 3080

Query: 852  PSRGVMPSPPP 862
             S      PPP
Sbjct: 3081 ESPSSQFGPPP 3091

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score =  107 bits (268), Expect = 3e-23
 Identities = 98/420 (23%), Positives = 120/420 (28%), Gaps = 45/420 (10%)

Query: 450  AGDSVTSLSKNEGPHDVILVSEPIDQVSNETVLSSLHQQSLVLTEGNPPCFPPSPSSPQS 509
            A  +V SL+    P       EP                +        P  P  P+ P  
Sbjct: 2688 ARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAG 2747

Query: 510  -IAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPS 568
               P  P  P   P +A    P P +AP   PP     P  +S + S  S P P  P   
Sbjct: 2748 PATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADP 2807

Query: 569  STNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSS 628
                      P    PP  S     P P+      PPPPP PPPP+     S A      
Sbjct: 2808 PA----AVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVR 2863

Query: 629  IVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPP 688
              PP   P   P+     +   P    +  P                +LP       P P
Sbjct: 2864 RRPPSRSPAAKPA-----APARPPVRRLARPAVSRSTESF-------ALPPDQPERPPQP 2911

Query: 689  PPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPS-------- 740
              PPPP    +    P      PPPP P PP  P   P  +     A P P         
Sbjct: 2912 QAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGR 2971

Query: 741  ---PTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPP--------PP 789
               P  R  QP+     P    PP    S     +    LA   +   PP        PP
Sbjct: 2972 VAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASSLALHEETDPPPVSLKQTLWPP 3031

Query: 790  PPLPKSCSTSIPM---------APPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPP 840
                 S + S+           A  P P     P      P  P         +   PPP
Sbjct: 3032 DDTEDSDADSLFDSDSERSDLEALDPLPPEPHDPFAHEPDPATPEAGARESPSSQFGPPP 3091

Length = 3151

>gnl|CDD|214697 smart00498, FH2, Formin Homology 2 Domain

 Score = 98.2 bits (245), Expect = 1e-21
 Identities = 47/152 (30%), Positives = 78/152 (51%), Gaps = 11/152 (7%)

Query: 902  HAPKKASLKPLHWVKV-TRAMQGSLWADSQKQENHSRAPEIDISELESLFSAASDGSGTN 960
              PKK  LKPLHW K+    + G++W      E        D+ ELE LFSA       +
Sbjct: 4    PKPKK-KLKPLHWDKLNPSDLSGTVWDK--IDEESEG----DLDELEELFSAKEKTKSAS 56

Query: 961  KTGVRRGSNINKP--EKVQLVELRRAYNCEIMLTKIKIPLPDMMNAVLALDSSALDIDQV 1018
            K    + S + K   ++ ++++ +R+ N  I+L K+ +   ++  A+L  D   L +D +
Sbjct: 57   KDVSEKKSILKKKASQEFKILDPKRSQNLAILLRKLHMSYEEIKEAILEGDEDVLSVDLL 116

Query: 1019 ENLIKFCPTKEEMELLKNYAGDKVM-LGKCEQ 1049
            E L+K+ PTKEE++ L+ Y  +    L + EQ
Sbjct: 117  EQLLKYAPTKEELKKLREYKEEDPEELARAEQ 148

FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain. Length = 392

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 99.5 bits (248), Expect = 5e-21
 Identities = 82/342 (23%), Positives = 107/342 (31%), Gaps = 13/342 (3%)

Query: 501 PPSPSSPQSIAPTPP--LPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLS 558
           PP    P S  P+P   L     P  + G  P        + P        SS   +   
Sbjct: 117 PPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPL 176

Query: 559 PPPPP--PPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFS 616
             P        S       S PP    P            + +    P         A S
Sbjct: 177 SSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASS 236

Query: 617 GKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSS 676
              SS+  S     P    P P P+     +    ++   GP   P P   S S +  S 
Sbjct: 237 SDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSP 296

Query: 677 LPSTSSIGSPPPPPPPPPSFSG---RSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALL 733
            PS SS GS P P  P  S S    R S   ST+S           P P+   + S +  
Sbjct: 297 SPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRP 356

Query: 734 SAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKI--TNKLQLAPTSQPAVPPPPPP 791
             P  PS   +  +PS  P  P      P    +   +    + + A    PA  P P P
Sbjct: 357 PPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSP 416

Query: 792 LPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSG 833
           L    ++    A  P  +    P   P P  PPPP G  R G
Sbjct: 417 LDAGAASGAFYARYPLLT----PSGEPWPGSPPPPPGRVRYG 454

Length = 1352

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 95.6 bits (238), Expect = 8e-20
 Identities = 80/381 (20%), Positives = 107/381 (28%), Gaps = 27/381 (7%)

Query: 532 PMSAPPPSPPPPPPPPLPSSTNNSFLSP----PPPPPPLPSSTNNNFISPPPPPPPPPCF 587
           P + PPP P    P     ST    LS      P     P+    +   PPPP PPP   
Sbjct: 67  PPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASP 126

Query: 588 SSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRST----------SSIVPPPPPPP 637
                  +         P PPP   P  +G   +AV S            S        P
Sbjct: 127 PPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAP 186

Query: 638 PPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFS 697
             P      +   PST      P PP      S   SS  P+     +         S S
Sbjct: 187 SSP-----PAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSS 241

Query: 698 GRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPP 757
             SS          P P P P   P     +S     +      +S SS     P P P 
Sbjct: 242 SESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPS 301

Query: 758 PPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINA 817
            P   P PSS  + ++    +  S  +         +  + S   +P   PS        
Sbjct: 302 SPGSGPAPSS-PRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPS-------P 353

Query: 818 PRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPPPGVKSSSVPPPPLP 877
            RPPPP  P  P +       P         P+        +        +   P     
Sbjct: 354 SRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPR 413

Query: 878 SVGKGKVTSGPASHGRGRLNS 898
                   +  A + R  L +
Sbjct: 414 PSPLDAGAASGAFYARYPLLT 434

Length = 1352

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 94.8 bits (235), Expect = 1e-19
 Identities = 96/381 (25%), Positives = 124/381 (32%), Gaps = 29/381 (7%)

Query: 502 PSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPP--PPLPSSTNNSFLSP 559
           PSP   +S + +        P     +   P +A  PS PPP P    +P   +     P
Sbjct: 155 PSPQDNESDSDSSAQQQLLQPQGPPSIQVPPGAALAPSAPPPTPSAQAVPPQGSPIAAQP 214

Query: 560 PPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKD 619
            P P      +  +  S  P   P P        P+  +T+    P PP P         
Sbjct: 215 APQPQQPSPLSLISAPSLHPQRLPSP------HPPLQPQTASQQSPQPPAPSSRHPQSSH 268

Query: 620 SSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPS 679
                     +   P     PS     +   P   +    PP P P  +     +    S
Sbjct: 269 HGPGPPMPHALQQGPVFLQHPSS----NPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQS 324

Query: 680 TSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLS-APPH 738
                 PP   P PP+ S      P TT     P      PP   GP+    + S  PP 
Sbjct: 325 ALQPQQPPREQPLPPAPSMPHIKPPPTTPIPQLPNQSHKHPPHLQGPSPFPQMPSNLPPP 384

Query: 739 PSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCST 798
           P+    SS P+ HPP   PPP               LQL P SQP    P  P   + S 
Sbjct: 385 PALKPLSSLPTHHPPSAHPPP---------------LQLMPQSQPLQSVPAQPPVLTQSQ 429

Query: 799 SIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMP 858
           S+P      P  G      P+ P    P       A+ PPP      P AP   S G  P
Sbjct: 430 SLPPKASTHPHSG-LHSGPPQSPFAQHPFTSGGLPAIGPPPSLPTSTPAAPPRASSGSQP 488

Query: 859 SPPPPPGVKSSSVPPPPLPSV 879
                P     + P PPLP +
Sbjct: 489 PGSALPSSGGCAGPGPPLPPI 509

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 89.1 bits (221), Expect = 8e-18
 Identities = 75/371 (20%), Positives = 99/371 (26%), Gaps = 29/371 (7%)

Query: 532 PMSAPPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKD 591
                PP+ P      L S +    +S       +             PP  PP      
Sbjct: 19  EFFPRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPP---PGP 75

Query: 592 FSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMP 651
            +  P+  SR  P        PA   ++ S      S   PPPP PPP S         P
Sbjct: 76  GTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPAS-------PPP 128

Query: 652 STSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGP 711
           S +        P   P      S      S             +    SS   +  +   
Sbjct: 129 SPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSS 188

Query: 712 PPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKI 771
           PP  PPP  PPAA           PP  S    +S  S  P P           SS    
Sbjct: 189 PPAEPPPSTPPAAAS-------PRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSS 241

Query: 772 TNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPP-PPLGPA 830
           +         +   P P P      +     +    PS    P ++   P    P   P+
Sbjct: 242 SESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPS 301

Query: 831 RSGAVLPPPPPAPKLP-----------TAPSPPSRGVMPSPPPPPGVKSSSVPPPPLPSV 879
             G+   P  P                T+ S  S       P P   +S S   PP P+ 
Sbjct: 302 SPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPAD 361

Query: 880 GKGKVTSGPAS 890
                     S
Sbjct: 362 PSSPRKRPRPS 372

Length = 1352

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 78.5 bits (194), Expect = 1e-14
 Identities = 49/232 (21%), Positives = 65/232 (28%), Gaps = 23/232 (9%)

Query: 622 AVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTS 681
           AV   +        PP P S      +  P+  +    P  P P  + +    +S     
Sbjct: 586 AVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAP 645

Query: 682 SIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSP 741
            + +P   P                   G   P  PPP P  A P +      A P P+P
Sbjct: 646 GVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAP 705

Query: 742 TSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIP 801
            +        P      P   PP ++ G        AP+     P P PP          
Sbjct: 706 AATP------PAGQADDPAAQPPQAAQG------ASAPSPAADDPVPLPP---------- 743

Query: 802 MAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPS 853
             P  PP     P   P PP P P   PA +    PP               
Sbjct: 744 -EPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMD 794

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 78.1 bits (193), Expect = 1e-14
 Identities = 42/232 (18%), Positives = 61/232 (26%), Gaps = 28/232 (12%)

Query: 535 APPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSP 594
           AP  +    PP P  S        P  P  P          + P  P P    ++   + 
Sbjct: 591 APGAAGGEGPPAPASSGPPEEAARPAAPAAP----------AAPAAPAPAG--AAAAPAE 638

Query: 595 MPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTS 654
             +  + G   P   P   A            +      P  PPP               
Sbjct: 639 ASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAP------------- 685

Query: 655 SIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPP 714
               P  P  P  +   + + +  +T   G    P   PP  +  +S          P P
Sbjct: 686 ---APAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLP 742

Query: 715 PPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPS 766
           P P  PP  AG  +      AP   +  + +  PS             P   
Sbjct: 743 PEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMD 794

Length = 824

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 76.8 bits (189), Expect = 3e-14
 Identities = 46/228 (20%), Positives = 76/228 (33%), Gaps = 28/228 (12%)

Query: 596 PSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSS 655
           P ++  G  P      P A   + + A  + ++  P P  PP  P+     ++   + ++
Sbjct: 365 PGQSGGGAGPATAAAAPVA---QPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAA 421

Query: 656 IGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPP 715
                 P P   + + + S+  P  +   +P P   P  +                P   
Sbjct: 422 APARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAA--------------ARPAAA 467

Query: 716 PPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPP--PPPPPPPPPPPSSLGKITN 773
            P P   AA    ++A  +A P P+           PPP    PP    P P+       
Sbjct: 468 GPRPVAAAAAAAPARAAPAAAPAPADDD--------PPPWEELPPEFASPAPAQPDAAPA 519

Query: 774 KLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPP 821
                    PA   P        + +   AP P  +   +P+ APRPP
Sbjct: 520 GWVAESIPDPATADPDDAFETL-APAPAAAPAPRAAAATEPVVAPRPP 566

Length = 700

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 76.6 bits (188), Expect = 5e-14
 Identities = 83/343 (24%), Positives = 108/343 (31%), Gaps = 22/343 (6%)

Query: 539 SPPPPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSE 598
           S P  P P    S ++S        P  P S      +   P  PPP  S++   P  S 
Sbjct: 150 SSPSIPSPQDNESDSDSSAQQQLLQPQGPPSIQVPPGAALAPSAPPPTPSAQAVPPQGSP 209

Query: 599 TSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGP 658
            +  P P P  P           ++ S  S+ P   P P PP          P T+S   
Sbjct: 210 IAAQPAPQPQQPS--------PLSLISAPSLHPQRLPSPHPP--------LQPQTASQQS 253

Query: 659 PPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPP 718
           P PP P             P         P     PS +       + +   P P P   
Sbjct: 254 PQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSSNPPQPFGLAQSQVPPLPLPSQA 313

Query: 719 PPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLA 778
            P     P+ S      PP   P   +       PPP  P P  P  S       +    
Sbjct: 314 QPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKPPPTTPIPQLPNQSHKHPPHLQGPSP 373

Query: 779 PTSQPAVPPPPP---PLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAV 835
               P+  PPPP   PL    +   P A PPP  +  +       P  PP L  ++S   
Sbjct: 374 FPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQLMPQSQPLQSVPAQPPVLTQSQS--- 430

Query: 836 LPPPPPAPKLPTAPSPPSRGVMPSPPPPPGVKSSSVPPPPLPS 878
           LPP           S P +      P   G   +  PPP LP+
Sbjct: 431 LPPKASTHPHSGLHSGPPQSPFAQHPFTSGGLPAIGPPPSLPT 473

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 75.0 bits (185), Expect = 1e-13
 Identities = 48/226 (21%), Positives = 62/226 (27%), Gaps = 36/226 (15%)

Query: 656 IGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPP 715
           +GP P         +   S      +   +P  P  P                 G    P
Sbjct: 588 VGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPA-----------GAAAAP 636

Query: 716 PPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKL 775
                 PA G  + +        P  +              P  PPP P           
Sbjct: 637 AEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAP--------- 687

Query: 776 QLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLG---PARS 832
             A  + PA   P  P P       P A PP         + P   PP    G   P+ +
Sbjct: 688 --AAPAAPAGAAPAQPAPA------PAATPPAG-----QADDPAAQPPQAAQGASAPSPA 734

Query: 833 GAVLPPPPPAPKLPTAPSPPSRGVMPSPPPPPGVKSSSVPPPPLPS 878
                P PP P  P  P+       P P P P    ++ PPP  PS
Sbjct: 735 ADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPS 780

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 74.3 bits (183), Expect = 2e-13
 Identities = 43/236 (18%), Positives = 60/236 (25%), Gaps = 45/236 (19%)

Query: 558 SPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSG 617
               PP P  S        P  P  P                    P  P P    A   
Sbjct: 596 GGEGPPAPASSGPPEEAARPAAPAAP------------------AAPAAPAPAGAAAAPA 637

Query: 618 KDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSL 677
           + S+A       V  P   P   +            +  G   P  PPP       ++  
Sbjct: 638 EASAAPAPG---VAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPA 694

Query: 678 PSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPP 737
            +  +  +P P   PP              +  P   PP      +A   ++   +  PP
Sbjct: 695 GAAPAQPAPAPAATPPAG-----------QADDPAAQPPQAAQGASAPSPAADDPVPLPP 743

Query: 738 HPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLP 793
            P      +     PPPPP P P   P             A    P+ P     + 
Sbjct: 744 EPDDPPDPAGAPAQPPPPPAPAPAAAP-------------AAAPPPSPPSEEEEMA 786

Length = 824

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 74.1 bits (182), Expect = 2e-13
 Identities = 41/223 (18%), Positives = 60/223 (26%), Gaps = 14/223 (6%)

Query: 678 PSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPP 737
           P  S  G+ P      P      +      +   P  PP  P    A   +++A+ +AP 
Sbjct: 365 PGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPA 424

Query: 738 HPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCS 797
             SP   +   +       P   P P P+           A     A  P         +
Sbjct: 425 RRSPAPEALAAARQASARGPGGAPAPAPAP----------AAAPAAAARPAAAGPRPVAA 474

Query: 798 TSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVM 857
            +     P   +    P  A   PPP   L P  +      P  AP    A S P     
Sbjct: 475 AAAA--APARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATA 532

Query: 858 PSPP--PPPGVKSSSVPPPPLPSVGKGKVTSGPASHGRGRLNS 898
                        ++ P P   +  +  V   P       L  
Sbjct: 533 DPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPD 575

Length = 700

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 73.6 bits (180), Expect = 4e-13
 Identities = 93/358 (25%), Positives = 109/358 (30%), Gaps = 39/358 (10%)

Query: 498 PCFPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFL 557
           P   P   SP S+   P L P   P+    + P   S   P PP P      SS      
Sbjct: 214 PAPQPQQPSPLSLISAPSLHPQRLPSPHPPLQPQTASQQSPQPPAPSSRHPQSS-----H 268

Query: 558 SPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSG 617
             P PP P        F+  P   PP P   ++   P     S+  P    PP   A   
Sbjct: 269 HGPGPPMPHALQQGPVFLQHPSSNPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQP 328

Query: 618 KDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPP-PPPPSFSGKGSSS 676
           +             PP   P PP+         PS   I PPP  P P  P+ S K    
Sbjct: 329 QQ------------PPREQPLPPA---------PSMPHIKPPPTTPIPQLPNQSHKHPPH 367

Query: 677 LPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPP--PPPPPPAAGPNSSKALLS 734
           L   S     P   PPPP+    SS+         PPP    P   P  + P     L  
Sbjct: 368 LQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQLMPQSQPLQSVPAQPPVLTQ 427

Query: 735 APPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPP-PPPLP 793
           +   P   S       H  PP  P    P  S            PTS PA PP       
Sbjct: 428 SQSLPPKASTHPHSGLHSGPPQSPFAQHPFTSGGLPAIGPPPSLPTSTPAAPPRASSGSQ 487

Query: 794 KSCSTSIPMAPPPPPSIGCKPINAPRPP---------PPPPPLGPARSGAVLPPPPPA 842
              S          P     PI     P         PPPPP  P+    V+  P  A
Sbjct: 488 PPGSALPSSGGCAGPGPPLPPIQIKEEPLDEAEEPESPPPPPRSPSPEPTVVNTPSHA 545

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 73.4 bits (180), Expect = 4e-13
 Identities = 40/236 (16%), Positives = 67/236 (28%), Gaps = 23/236 (9%)

Query: 500 FPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSP 559
           F P  S   +   T    P + PA A+   P   +  P +PP  P     ++      + 
Sbjct: 363 FRPGQSGGGAGPATAAAAPVAQPAPAA-AAPAAAAPAPAAPPAAPAAAPAAA------AA 415

Query: 560 PPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKD 619
                  P+            P P    +++  S      +  P P P   P  A     
Sbjct: 416 ARAVAAAPA---------RRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAA----- 461

Query: 620 SSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPS 679
             A  + +   P        P+     ++  P+     P    PP   S +     + P+
Sbjct: 462 --ARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPA 519

Query: 680 TSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSA 735
                S P P    P  +  +       +  P       P      P +S + L  
Sbjct: 520 GWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPD 575

Length = 700

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 73.4 bits (180), Expect = 4e-13
 Identities = 43/233 (18%), Positives = 61/233 (26%), Gaps = 30/233 (12%)

Query: 637 PPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSF 696
            P  +     +   P+ ++     P P  PP+      ++  +  ++ + P    P P  
Sbjct: 373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEA 432

Query: 697 SGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPP 756
              +    +    G P P P P   PAA           P    P               
Sbjct: 433 LAAARQASARGPGGAPAPAPAPAAAPAAAA--------RPAAAGPRPV-------AAAAA 477

Query: 757 PPPPPPPPPSSLGKITNKLQLAPTSQPAVPPP----PPPLPKSCSTSIPMAPPPPPSIGC 812
             P    P +           AP      PPP    PP            AP    +   
Sbjct: 478 AAPARAAPAA-----------APAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESI 526

Query: 813 KPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPPPG 865
                  P      L PA + A  P    A +   AP PP       P    G
Sbjct: 527 PDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDG 579

Length = 700

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 73.1 bits (180), Expect = 5e-13
 Identities = 43/224 (19%), Positives = 65/224 (29%), Gaps = 27/224 (12%)

Query: 503 SPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPPPP 562
               P + A + P    + PA+ +     P +   P+P      P  +S   +     P 
Sbjct: 596 GGEGPPAPASSGPPEEAARPAAPAA----PAAPAAPAPAGAAAAPAEASAAPAPGVAAPE 651

Query: 563 PPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSA 622
             P   +        P        + +K     P+     P P  P  P  A   + + A
Sbjct: 652 HHPKHVAV-------PDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPA 704

Query: 623 VRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSS 682
             +T        P   PP      S+  P+     P PP P  PP  +G  +   P  + 
Sbjct: 705 PAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAP 764

Query: 683 IGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGP 726
             +  P   PPPS                PP          A  
Sbjct: 765 APAAAPAAAPPPS----------------PPSEEEEMAEDDAPS 792

Length = 824

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 72.9 bits (179), Expect = 6e-13
 Identities = 60/266 (22%), Positives = 70/266 (26%), Gaps = 44/266 (16%)

Query: 501 PPSPSSPQSIAPTPPLPPHSSPASAS--GVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLS 558
             SP      A T P          S  G  P P   PP +P   P P  P+      LS
Sbjct: 99  TFSPCQSGYEASTDPEYIPDLQPDPSLWGTAPKPEPQPPQAPESQPQPQTPAQK---MLS 155

Query: 559 PPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGK 618
                  L        +  PP    P          MP       P   PP  PP +   
Sbjct: 156 LEEVEAQLQQRQQAPQLPQPPQQVLPQ--------GMP-PRQAAFPQQGPPEQPPGY--- 203

Query: 619 DSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLP 678
                          P PP       +    +P+ S     PP PP  P           
Sbjct: 204 ---------------PQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQF 248

Query: 679 STSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPH 738
              S   PPPPP PP     +    P   ++ PP   P P P    G N         P 
Sbjct: 249 PGLSQQMPPPPPQPPQ----QQQQPPQPQAQPPPQNQPTPHPGLPQGQN--------APL 296

Query: 739 PSPTSRSSQPSFHPPPPPPPPPPPPP 764
           P P      P    P      P    
Sbjct: 297 PPPQQPQLLPLVQQPQGQQRGPQFRE 322

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 71.3 bits (175), Expect = 2e-12
 Identities = 44/246 (17%), Positives = 65/246 (26%), Gaps = 14/246 (5%)

Query: 670 SGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSI-----VPS--TTSKGPPPPPPPPPPPP 722
           +         +    +  P      + +    I      PS   T+  P P PP  P   
Sbjct: 84  APSVGPDSDLSQKTSTFSPCQSGYEASTDPEYIPDLQPDPSLWGTAPKPEPQPPQAPESQ 143

Query: 723 AAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQ 782
                 ++ +LS     +   +  Q    P PP    P   PP             P   
Sbjct: 144 PQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGY 203

Query: 783 PAVPPPPPPLPKSCS-----TSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLP 837
           P  P   P   +        +  P  PP PP +  +P    +P  P             P
Sbjct: 204 PQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPP 263

Query: 838 PPPPAPKLPTAPSPPSRGVMPSPPPPPGVKSSSVPPPPLPSVGKGKVTSGPASHGRGRLN 897
                P  P A  PP     P+P P      ++  PPP        V          +  
Sbjct: 264 QQQQQPPQPQAQPPPQN--QPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFR 321

Query: 898 SGVSHA 903
             +   
Sbjct: 322 EQLVQL 327

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 70.2 bits (172), Expect = 4e-12
 Identities = 57/261 (21%), Positives = 69/261 (26%), Gaps = 30/261 (11%)

Query: 603 PPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPP 662
                     P  SG ++S            P   P PS +G    T P      P  P 
Sbjct: 92  DLSQKTSTFSPCQSGYEASTDPE------YIPDLQPDPSLWG----TAPKPEPQPPQAPE 141

Query: 663 PPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPP 722
             P P    +   SL    +        P  P    +         +   P   PP  PP
Sbjct: 142 SQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPP 201

Query: 723 AAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQ 782
                         P     + S  P+  P PP  P  PPP            Q    SQ
Sbjct: 202 GYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQP--------QFPGLSQ 253

Query: 783 PAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPA 842
              PPPP P  +      P A PPP             P P P  G  +      PPP  
Sbjct: 254 QMPPPPPQPPQQQQQPPQPQAQPPPQ----------NQPTPHP--GLPQGQNAPLPPPQQ 301

Query: 843 PKLPTAPSPPSRGVMPSPPPP 863
           P+L      P           
Sbjct: 302 PQLLPLVQQPQGQQRGPQFRE 322

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 67.2 bits (164), Expect = 3e-11
 Identities = 42/200 (21%), Positives = 54/200 (27%), Gaps = 9/200 (4%)

Query: 651 PSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKG 710
               S G P PPPP     S             G   P     P    R   +P+     
Sbjct: 87  TVDPSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAY 146

Query: 711 PP--PPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSL 768
           P     P P   P AA     +      P  +P +  +  +        P     P    
Sbjct: 147 PAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQ 206

Query: 769 GKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLG 828
            +           +P       P P   +  +    P PP     P+   RP  P P   
Sbjct: 207 RRRDYDHPRPDWDRPRRDRTDRPEPPPGAGHVHRGGPGPPERDDAPVVPIRPSAPGPL-- 264

Query: 829 PARSGAVLPPPPPAPKLPTA 848
                A  P P P P  PTA
Sbjct: 265 -----AAQPAPAPGPGEPTA 279

Length = 617

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 65.1 bits (159), Expect = 4e-11
 Identities = 34/144 (23%), Positives = 43/144 (29%), Gaps = 16/144 (11%)

Query: 605 PPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPP 664
            P P PP          A  ++ +  P     P                +S   PP   P
Sbjct: 147 DPNPGPPLDEEDEDADVATTNSDNSFPGEDADPAS--------------ASPSDPPSSSP 192

Query: 665 PPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAA 724
             PSF          + S  S PP P    S +   S    T    PP P  PPPPP   
Sbjct: 193 GVPSFPSPPEDPSSPSDS--SLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQ 250

Query: 725 GPNSSKALLSAPPHPSPTSRSSQP 748
            P  S A  + P   +  +     
Sbjct: 251 VPPLSTAKPTPPSASATPAPIGGI 274

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 66.4 bits (162), Expect = 5e-11
 Identities = 45/284 (15%), Positives = 70/284 (24%), Gaps = 26/284 (9%)

Query: 592 FSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMP 651
           F P  +         P        +    +A    +S VP                +   
Sbjct: 358 FEPAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAA 417

Query: 652 STSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGP 711
           + ++    PP  P PP+ + +G  +    + + +         S        P   S   
Sbjct: 418 AAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSA 477

Query: 712 PPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKI 771
             P    PP  A  P    A  SA    +     +  +      P    PP P       
Sbjct: 478 SAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAP------- 530

Query: 772 TNKLQLAPTSQPAVPPPPPPLPKSC-------------STSIPMAPPPPPSIGCKPINAP 818
                 A    PA   P      +              S+               P  AP
Sbjct: 531 -----EARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAP 585

Query: 819 RPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPP 862
           +P  P   +      A       AP    A +  +     +PPP
Sbjct: 586 KPAAPRVAVQVPTPRAR-AATGDAPPNGAARAEQAAESRGAPPP 628

Length = 830

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 64.3 bits (157), Expect = 8e-11
 Identities = 31/137 (22%), Positives = 37/137 (27%), Gaps = 10/137 (7%)

Query: 593 SPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPS 652
            P   E                       A  +++S   PP   P  PSF          
Sbjct: 151 GPPLDEEDEDADVATTNSDNSFP---GEDADPASASPSDPPSSSPGVPSFPSPPEDPSSP 207

Query: 653 TSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPP 712
                     PP P SF        P + +  SPPP P  PP    +     ST    P 
Sbjct: 208 -----SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAK--PT 260

Query: 713 PPPPPPPPPPAAGPNSS 729
           PP     P P  G    
Sbjct: 261 PPSASATPAPIGGITLD 277

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 65.9 bits (161), Expect = 8e-11
 Identities = 26/140 (18%), Positives = 43/140 (30%), Gaps = 27/140 (19%)

Query: 501 PPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPP 560
            P+     + A  P     ++PA A        +A  P+ PP   PP P +   +  +P 
Sbjct: 380 TPARPEAAAPAAAPVAQAAAAPAPA---AAPAAAASAPAAPPAAAPPAPVAAPAA-AAPA 435

Query: 561 PPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDS 620
             P   P++     ++  P PP      + +   +P   +  P      P P A      
Sbjct: 436 AAPAAAPAA-----VALAPAPPAQA---APETVAIPVRVAPEPAVASAAPAPAA------ 481

Query: 621 SAVRSTSSIVPPPPPPPPPP 640
                     P      P  
Sbjct: 482 ---------APAAARLTPTE 492

Length = 618

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 63.6 bits (155), Expect = 1e-10
 Identities = 40/151 (26%), Positives = 47/151 (31%), Gaps = 20/151 (13%)

Query: 492 LTEGNPPCFPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPP--PPPPPLP 549
           L EG  P   P P   +       +   +S  S  G    P SA P  PP   P  P  P
Sbjct: 142 LKEGEDP--NPGPPLDEE-DEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFP 198

Query: 550 SSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPP 609
           S   +         PP PSS  ++   P P  P  P                 PP P  P
Sbjct: 199 SPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNP---------------SPPPGPAAP 243

Query: 610 PPPPAFSGKDSSAVRSTSSIVPPPPPPPPPP 640
           PPPP       S  + T       P P    
Sbjct: 244 PPPPVQQVPPLSTAKPTPPSASATPAPIGGI 274

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 63.6 bits (155), Expect = 1e-10
 Identities = 33/153 (21%), Positives = 44/153 (28%), Gaps = 25/153 (16%)

Query: 541 PPPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETS 600
            P P PPL     ++ ++        P    +   +   P  PP         P P E  
Sbjct: 147 DPNPGPPLDEEDEDADVATTNSDNSFPGEDADP--ASASPSDPPSSSPGVPSFPSPPEDP 204

Query: 601 RGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPP 660
             P     PP P +F                 P  P PPP                  P 
Sbjct: 205 SSPSDSSLPPAPSSFQSDT------PPPSPESPTNPSPPP-----------------GPA 241

Query: 661 PPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPP 693
            PPPPP       S++ P+  S  + P P    
Sbjct: 242 APPPPPVQQVPPLSTAKPTPPSASATPAPIGGI 274

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 64.7 bits (158), Expect = 1e-10
 Identities = 33/158 (20%), Positives = 47/158 (29%), Gaps = 28/158 (17%)

Query: 694 PSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPP 753
           P+ +  ++            P  P    PAA P +  A   AP      + S       P
Sbjct: 366 PAAAAEAAAPAEKK-----TPARPEAAAPAAAPVAQAAAAPAPAAAPAAAAS------AP 414

Query: 754 PPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCK 813
             PP   PP P ++             + PA  P   P   + + + P A   P ++   
Sbjct: 415 AAPPAAAPPAPVAA----------PAAAAPAAAPAAAPAAVALAPA-PPAQAAPETVAIP 463

Query: 814 PINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSP 851
              AP P        PA        P  A   PT    
Sbjct: 464 VRVAPEPAVASAAPAPA------AAPAAARLTPTEEGD 495

Length = 618

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 64.5 bits (157), Expect = 2e-10
 Identities = 44/236 (18%), Positives = 65/236 (27%), Gaps = 44/236 (18%)

Query: 560 PPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKD 619
            P   P P++      +P P  PP    ++   +      +  P    P P   A + + 
Sbjct: 380 APVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQA 439

Query: 620 SSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPS 679
           S+     +    P P   P                +  P    P P              
Sbjct: 440 SARGPGGAPAPAPAPAAAPAA--------------AARPAAAGPRPVA------------ 473

Query: 680 TSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHP 739
             +  +  P    P +    +   P    + PP    P P  P A P    A   A   P
Sbjct: 474 --AAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAP----AGWVAESIP 527

Query: 740 SPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKS 795
            P +     +F    P P   P P              A  ++P V P PP    S
Sbjct: 528 DPATADPDDAFETLAPAPAAAPAPRA------------AAATEPVVAPRPPRASAS 571

Length = 700

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 62.8 bits (153), Expect = 2e-10
 Identities = 35/165 (21%), Positives = 42/165 (25%), Gaps = 27/165 (16%)

Query: 607 PPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPP 666
            P P PP     + + V                P      +S  PS      P  P  P 
Sbjct: 147 DPNPGPPLDEEDEDADV-------ATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPS 199

Query: 667 PSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGP 726
           P            +S   S  PP P             S T+  PPP P  PPPPP    
Sbjct: 200 PPED--------PSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQV 251

Query: 727 NSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKI 771
                         PT     P      P P         ++ K 
Sbjct: 252 PP-------LSTAKPT-----PPSASATPAPIGGITLDDDAIAKA 284

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 64.5 bits (157), Expect = 2e-10
 Identities = 47/283 (16%), Positives = 80/283 (28%), Gaps = 23/283 (8%)

Query: 493 TEGNPPCFPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSST 552
           T G  P          ++       P +  A+A G   +P              P  ++ 
Sbjct: 363 TGGGAPGGGVPARVAGAVPA-----PGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAA 417

Query: 553 NNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPP 612
             +  +  PP  P P +T +          P P  ++   S       R   PP      
Sbjct: 418 AAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSA 477

Query: 613 PAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPP------- 665
            A +           +     P    P +     +    S         PP P       
Sbjct: 478 SAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTP 537

Query: 666 ----PPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPP 721
               P + +G  +++L    + G          S  G  +   +  +  P   P P  P 
Sbjct: 538 AAAAPAARAGGAAAALDVLRNAGM------RVSSDRGARAAAAAKPAAAPAAAPKPAAPR 591

Query: 722 PAAGPNSSKALLSAPPH-PSPTSRSSQPSFHPPPPPPPPPPPP 763
            A    + +A  +     P+  +R+ Q +     PPP    PP
Sbjct: 592 VAVQVPTPRARAATGDAPPNGAARAEQAAESRGAPPPWEDIPP 634

Length = 830

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 64.5 bits (158), Expect = 2e-10
 Identities = 29/164 (17%), Positives = 42/164 (25%), Gaps = 9/164 (5%)

Query: 704 PSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPP 763
           P+     P  PP    P  +A   ++     APP           +   P   P  P P 
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASA---PQQAPAVPLPE 417

Query: 764 PPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPP 823
             S L     +LQ                P + S + P+          +P  AP     
Sbjct: 418 TTSQLLAARQQLQ----RAQGATKAKKSEPAAASRARPVNSALERLASVRP--APSALEK 471

Query: 824 PPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPPPGVK 867
            P    A       P     +    P    + +     P    K
Sbjct: 472 APAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAAK 515

Length = 647

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 64.0 bits (156), Expect = 3e-10
 Identities = 53/262 (20%), Positives = 66/262 (25%), Gaps = 22/262 (8%)

Query: 532 PMSAPPPSPPPPPPPPLPSSTNNSFLSPPPPPPPL---PSSTNNNFISPPPPPPPPPCFS 588
              +   S   P      +ST+  ++    P P L              P   P P   +
Sbjct: 91  SDLSQKTSTFSPCQSGYEASTDPEYIPDLQPDPSLWGTAPKPEPQPPQAPESQPQPQTPA 150

Query: 589 SKDFSPMPSETS-RGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGS 647
            K  S    E   +     P  P PP                V P   PP   +F  +G 
Sbjct: 151 QKMLSLEEVEAQLQQRQQAPQLPQPPQQ--------------VLPQGMPPRQAAFPQQGP 196

Query: 648 STMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTT 707
              P      P   P    P       S  P+   +  PP  P  PP          S  
Sbjct: 197 PEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPL--PPQLPQQPPPLQQPQFPGLSQQ 254

Query: 708 SKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPP-PPPPPS 766
              PPP PP     P              PHP    +       PP  P   P    P  
Sbjct: 255 MPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLP-QGQNAPLPPPQQPQLLPLVQQPQG 313

Query: 767 SLGKITNKLQLAPTSQPAVPPP 788
                  + QL   SQ      
Sbjct: 314 QQRGPQFREQLVQLSQQQREAL 335

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 62.4 bits (152), Expect = 3e-10
 Identities = 34/145 (23%), Positives = 42/145 (28%), Gaps = 27/145 (18%)

Query: 658 PPPPPPPP---------PPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTS 708
            P P PP            + S        +  +  SP  PP   P      S     +S
Sbjct: 147 DPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSS 206

Query: 709 KGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSL 768
                 PP P    +  P  S          SPT+ S  P    PPPPP    PP  ++ 
Sbjct: 207 PSDSSLPPAPSSFQSDTPPPS--------PESPTNPSPPPGPAAPPPPPVQQVPPLSTA- 257

Query: 769 GKITNKLQLAPTSQPAVPPPPPPLP 793
                     PT   A   P P   
Sbjct: 258 ---------KPTPPSASATPAPIGG 273

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 62.0 bits (151), Expect = 4e-10
 Identities = 32/152 (21%), Positives = 41/152 (26%), Gaps = 17/152 (11%)

Query: 709 KGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSL 768
           +G  P P PP        + +               +S       PP   P  P  PS  
Sbjct: 144 EGEDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASP--SDPPSSSPGVPSFPSP- 200

Query: 769 GKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLG 828
                                PP P S       +  PPPS       +P P P  PP  
Sbjct: 201 ---------PEDPSSPSDSSLPPAPSS-----FQSDTPPPSPESPTNPSPPPGPAAPPPP 246

Query: 829 PARSGAVLPPPPPAPKLPTAPSPPSRGVMPSP 860
           P +    L    P P   +A   P  G+    
Sbjct: 247 PVQQVPPLSTAKPTPPSASATPAPIGGITLDD 278

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 63.8 bits (155), Expect = 5e-10
 Identities = 55/235 (23%), Positives = 78/235 (33%), Gaps = 17/235 (7%)

Query: 580 PPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDS----SAVRSTSSIVPPPPP 635
           P PPP      D +P  +  + GPPPPP    P   +        +A+      +P PP 
Sbjct: 255 PAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAPLALPAPPD 314

Query: 636 PPPPPSFYGKGSS-----TMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTS---SIGSPP 687
           PPPP               M   S +  P    P       + + + PS+    S G   
Sbjct: 315 PPPPAPAGDAEEEDDEDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTPPSSLEDLSAGRHH 374

Query: 688 PPPPPPPSFSGRS-----SIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPT 742
           P     P+   RS     +             P  P P     P  +    SAPP P+  
Sbjct: 375 PKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPATP 434

Query: 743 SRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCS 797
             S++P     P PPP   PP P++     +       +  A+    PP P    
Sbjct: 435 LPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDATRKALDALRERRPPEPPGAD 489

Length = 3151

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 63.2 bits (153), Expect = 6e-10
 Identities = 76/285 (26%), Positives = 93/285 (32%), Gaps = 37/285 (12%)

Query: 497 PPCFPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSF 556
                P P  P ++   P    H S              PP   P    P   +  + S 
Sbjct: 266 SSHHGPGPPMPHALQQGPVFLQHPSSNPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSA 325

Query: 557 LSPPPPP--PPLPSSTNNNFISPPPPPPPPPCFS-SKDFSPMPSETSRGPPPPPPPPPPP 613
           L P  PP   PLP + +   I PPP  P P   + S    P     S  P  P   PPPP
Sbjct: 326 LQPQQPPREQPLPPAPSMPHIKPPPTTPIPQLPNQSHKHPPHLQGPSPFPQMPSNLPPPP 385

Query: 614 AFSGKDSSAVRSTSSIVPPP-----------PPPPPPP------SFYGKGSSTMPSTSSI 656
           A     S       S  PPP             P  PP      S   K S+   S    
Sbjct: 386 ALKPLSSLPTHHPPSAHPPPLQLMPQSQPLQSVPAQPPVLTQSQSLPPKASTHPHSGLHS 445

Query: 657 GPPPPPPPPPPSFSGKGSSSLPSTSSIGS-PPPPPPPPPSFSGRSSIVPSTTSKGPPPPP 715
           GPP  P    P  SG   +  P  S   S P  PP          S +PS+     P PP
Sbjct: 446 GPPQSPFAQHPFTSGGLPAIGPPPSLPTSTPAAPPRASSGSQPPGSALPSSGGCAGPGPP 505

Query: 716 PPP----------------PPPPAAGPNSSKALLSAPPHPSPTSR 744
            PP                PPPP   P+    +++ P H S ++R
Sbjct: 506 LPPIQIKEEPLDEAEEPESPPPPPRSPSPEPTVVNTPSHASQSAR 550

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 62.7 bits (153), Expect = 8e-10
 Identities = 35/168 (20%), Positives = 51/168 (30%), Gaps = 13/168 (7%)

Query: 501 PPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPP 560
            P+  +P   A  P     +     +     P     P            +   +  +PP
Sbjct: 623 APAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPP 682

Query: 561 PPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDS 620
           P P P   +      +P    P  P       +P P+ T        P   PP  +   S
Sbjct: 683 PAPAPAAPA------APAGAAPAQP-------APAPAATPPAGQADDPAAQPPQAAQGAS 729

Query: 621 SAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPS 668
           +   +    VP PP P  PP   G  +   P  +      P   PPPS
Sbjct: 730 APSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPS 777

Length = 824

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 61.8 bits (150), Expect = 1e-09
 Identities = 44/217 (20%), Positives = 52/217 (23%), Gaps = 27/217 (12%)

Query: 559 PPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGK 618
            P PPPP    T+     P P   P   +        P    R    P   P  PA+  +
Sbjct: 94  EPAPPPPHARRTSEP-ELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYPAYQQR 152

Query: 619 DSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLP 678
                       P P   P     YG           +G PP  P   P+          
Sbjct: 153 ------------PEPGAWPRAADDYG------WQQQRLGFPPRAPYASPASYAPEQERDR 194

Query: 679 STSSIGSPPPPPP-PPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPP 737
                G P                  P       P PPP        GP           
Sbjct: 195 EPYDAGRPEYDQRRRDYDHPRPDWDRPRRDRTDRPEPPPGAGHVHRGGPGPP----ERDD 250

Query: 738 HPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNK 774
            P    R S P    P    P P P P     ++  K
Sbjct: 251 APVVPIRPSAPG---PLAAQPAPAPGPGEPTARLNPK 284

Length = 617

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 60.5 bits (147), Expect = 1e-09
 Identities = 37/127 (29%), Positives = 42/127 (33%), Gaps = 9/127 (7%)

Query: 753 PPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGC 812
            P P PP       +    TN     P          P  P S S  +P  P PP     
Sbjct: 147 DPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDP-- 204

Query: 813 KPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPPPGVKSSSVP 872
              +    PP P              PPP+P+ PT PSPP     P PPP   V   S  
Sbjct: 205 SSPSDSSLPPAPSSFQS-------DTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTA 257

Query: 873 PPPLPSV 879
            P  PS 
Sbjct: 258 KPTPPSA 264

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 62.0 bits (151), Expect = 1e-09
 Identities = 28/178 (15%), Positives = 44/178 (24%), Gaps = 47/178 (26%)

Query: 592 FSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMP 651
           F P  +  +  P     P  P A                  P   P   +      +  P
Sbjct: 364 FKPAAAAEAAAPAEKKTPARPEA----------------AAPAAAPVAQAAAAPAPAAAP 407

Query: 652 STSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGP 711
           + ++  P  PP   PP+          +  +  +P   P   P+                
Sbjct: 408 AAAASAPAAPPAAAPPA--------PVAAPAAAAPAAAPAAAPA---------------A 444

Query: 712 PPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLG 769
               P PP   A    +    ++  P           S  P P   P      P+  G
Sbjct: 445 VALAPAPPAQAAPETVAIPVRVAPEPAV--------ASAAPAPAAAPAAARLTPTEEG 494

Length = 618

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 61.2 bits (148), Expect = 2e-09
 Identities = 82/362 (22%), Positives = 111/362 (30%), Gaps = 58/362 (16%)

Query: 492 LTEGNPPCFPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSS 551
           L    PP  P + + P   +P    P       +   +    S  P   P P PP  P +
Sbjct: 189 LAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQRLPSPHPPLQPQT 248

Query: 552 TNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPP 611
            +     PP P    P S+++    P P          +  S  P +         PP P
Sbjct: 249 ASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSSNPPQPFGLAQSQVPPLP 308

Query: 612 PPAFSGKDSSAVRSTSSIVP------------------PPPPPPPPPSFYGKGSSTMPST 653
            P+ +   S    S S++ P                   PPP  P P    +     P  
Sbjct: 309 LPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKPPPTTPIPQLPNQSHKHPPHL 368

Query: 654 SSIGPPPPPP---PPPPSFSGKGSSSLPSTSSIGSPPPP-------------PPPPPSFS 697
               P P  P   PPPP+   K  SSLP+     + PPP             P  PP  +
Sbjct: 369 QGPSPFPQMPSNLPPPPAL--KPLSSLPTHHPPSAHPPPLQLMPQSQPLQSVPAQPPVLT 426

Query: 698 GRSSIVPSTTSKGPPPPPPPPPPP------------PAAGPNSSKALLSAPPHPSPTSRS 745
              S+ P  ++         PP              PA GP  S    +    P  +S S
Sbjct: 427 QSQSLPPKASTHPHSGLHSGPPQSPFAQHPFTSGGLPAIGPPPSLPTSTPAAPPRASSGS 486

Query: 746 SQPS----FHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIP 801
             P            P PP PP          +  L    +P  PPPPP  P    T + 
Sbjct: 487 QPPGSALPSSGGCAGPGPPLPPIQ------IKEEPLDEAEEPESPPPPPRSPSPEPTVVN 540

Query: 802 MA 803
             
Sbjct: 541 TP 542

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 59.7 bits (145), Expect = 2e-09
 Identities = 30/136 (22%), Positives = 40/136 (29%), Gaps = 12/136 (8%)

Query: 535 APPPSPPPPPPPPL----PSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSK 590
            P P PP            ++++NSF      P     S   +     P  P PP   S 
Sbjct: 147 DPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSS 206

Query: 591 DFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTM 650
                       P P       P  S +  +   + S    P  PPPPP       S+  
Sbjct: 207 PSDSSLP-----PAPSSFQSDTPPPSPESPT---NPSPPPGPAAPPPPPVQQVPPLSTAK 258

Query: 651 PSTSSIGPPPPPPPPP 666
           P+  S    P P    
Sbjct: 259 PTPPSASATPAPIGGI 274

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 59.7 bits (145), Expect = 2e-09
 Identities = 35/145 (24%), Positives = 43/145 (29%), Gaps = 17/145 (11%)

Query: 687 PPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSS 746
            P P PP       + V +T S    P     P   +     S +         P   SS
Sbjct: 147 DPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSS 206

Query: 747 QPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPP--PPPLPKSCSTSIPMAP 804
                 PP P       PP S          +PT+    P P  PPP P      +  A 
Sbjct: 207 PSDSSLPPAPSSFQSDTPPPSPE--------SPTNPSPPPGPAAPPPPPVQQVPPLSTAK 258

Query: 805 PPPPSIGCKPINAPRPPPPPPPLGP 829
           P PPS       A   P P   +  
Sbjct: 259 PTPPS-------ASATPAPIGGITL 276

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 60.7 bits (147), Expect = 3e-09
 Identities = 28/150 (18%), Positives = 46/150 (30%)

Query: 501 PPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPP 560
            P+P +  +        P  +PA A      P +A  P+   P P    ++   +  +P 
Sbjct: 427 SPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPA 486

Query: 561 PPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDS 620
             P P           PP    P P       +   +E+   P    P       +   +
Sbjct: 487 AAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPA 546

Query: 621 SAVRSTSSIVPPPPPPPPPPSFYGKGSSTM 650
           +A    ++    P   P PP     G   M
Sbjct: 547 AAPAPRAAAATEPVVAPRPPRASASGLPDM 576

Length = 700

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 60.4 bits (147), Expect = 4e-09
 Identities = 39/144 (27%), Positives = 45/144 (31%), Gaps = 25/144 (17%)

Query: 710 GPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLG 769
           G    P    P  AA          A P  +P   ++ P+    P P   P P P     
Sbjct: 389 GGAGAPAAAAPSAAA----------AAPAAAPAPAAAAPAAAAAPAPAAAPQPAP----- 433

Query: 770 KITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGP 829
                   AP   PA P P    P   + S P A  P       P  AP P   P P  P
Sbjct: 434 --------APAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPP 485

Query: 830 ARSGAVLPPPPPAPKLPTAPSPPS 853
           A       P  PA   P AP+   
Sbjct: 486 AAPAPAAAPAAPAA--PAAPAGAD 507

Length = 824

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 60.1 bits (146), Expect = 4e-09
 Identities = 27/142 (19%), Positives = 43/142 (30%), Gaps = 20/142 (14%)

Query: 500 FPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSP 559
           F P  ++ ++ AP     P    A+A    P+  +A  P+P   P             + 
Sbjct: 364 FKP-AAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPA----------AAAS 412

Query: 560 PPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKD 619
            P  PP            PP P   P  ++   +P  +  +    P PP    P      
Sbjct: 413 APAAPPAA---------APPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIP 463

Query: 620 SSAVRSTSSIVPPPPPPPPPPS 641
                  +     P P   P +
Sbjct: 464 VRVAPEPAVASAAPAPAAAPAA 485

Length = 618

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 60.3 bits (146), Expect = 5e-09
 Identities = 57/257 (22%), Positives = 77/257 (29%), Gaps = 50/257 (19%)

Query: 635 PPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPP 694
           P PPP    G   +   +  + GPPPPP    P+ +      +   +  G+P   P PP 
Sbjct: 255 PAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAPLALPAPPD 314

Query: 695 SFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSS-------Q 747
                             PPPP P        +   A+    P P P            +
Sbjct: 315 ------------------PPPPAPAGDAEEEDDEDGAMEVVSPLPRPRQHYPLGFPKRRR 356

Query: 748 PSFHPP-----------PPPPPPPPPPPPSSLGKITNKLQLAP---TSQPAVPPPPPPLP 793
           P++ PP            P     P     S           P          P P  +P
Sbjct: 357 PTWTPPSSLEDLSAGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVP 416

Query: 794 KSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPS 853
               T +P + PPPP+             P    GPA      PP P     P  P   +
Sbjct: 417 TPAPTPVPASAPPPPA------TPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDAT 470

Query: 854 RGVMPS-----PPPPPG 865
           R  + +     PP PPG
Sbjct: 471 RKALDALRERRPPEPPG 487

Length = 3151

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 60.1 bits (146), Expect = 5e-09
 Identities = 31/178 (17%), Positives = 47/178 (26%), Gaps = 42/178 (23%)

Query: 658 PPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPP 717
           P        P+         P+     +P   P    + +   +  P+  +  P  PP  
Sbjct: 366 PAAAAEAAAPA-----EKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAA 420

Query: 718 PPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQL 777
            PP P A P ++    +A P  +P +           P PP    P   ++         
Sbjct: 421 APPAPVAAPAAAAP--AAAPAAAPAAV-------ALAPAPPAQAAPETVAIPVRV----- 466

Query: 778 APTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAV 835
               +PAV    P          P A P                  P   G      V
Sbjct: 467 --APEPAVASAAPA---------PAAAPAA------------ARLTPTEEGDVWHATV 501

Length = 618

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 58.8 bits (143), Expect = 1e-08
 Identities = 32/145 (22%), Positives = 48/145 (33%), Gaps = 2/145 (1%)

Query: 497 PPCFPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSF 556
            P    +  +P   AP       + P ++ G    P  A   +P  PPP P P++     
Sbjct: 635 APAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAP- 693

Query: 557 LSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFS 616
            +   P  P P+            P   P  +++  S          P PP P  PP  +
Sbjct: 694 -AGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPA 752

Query: 617 GKDSSAVRSTSSIVPPPPPPPPPPS 641
           G  +      +      P   PPPS
Sbjct: 753 GAPAQPPPPPAPAPAAAPAAAPPPS 777

Length = 824

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 58.7 bits (143), Expect = 1e-08
 Identities = 23/158 (14%), Positives = 41/158 (25%), Gaps = 4/158 (2%)

Query: 669 FSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNS 728
           F        P      + P       +    +   P   +  PPP   P   P    P +
Sbjct: 359 FHPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPET 418

Query: 729 SKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPP 788
           +  LL+A         +++       P       P  S+L ++ +        + A    
Sbjct: 419 TSQLLAARQQLQRAQGATKAK--KSEPAAASRARPVNSALERLASVRPAPSALEKAPAKK 476

Query: 789 PPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPP 826
                K  +T+       P +       A      P  
Sbjct: 477 EAYRWK--ATNPVEVKKEPVATPKALKKALEHEKTPEL 512

Length = 647

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 58.4 bits (141), Expect = 2e-08
 Identities = 68/271 (25%), Positives = 84/271 (30%), Gaps = 65/271 (23%)

Query: 515 PLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPPP---------PPPP 565
           P PP      A         A  P PPP    P      N   +PP           P  
Sbjct: 255 PAPPPVVGEGADRAPETARGATGPPPPPEAAAP------NGAAAPPDGVWGAALAGAPLA 308

Query: 566 LPSSTNNNFISPPPPPPPPPCFSSKD----------FSPMPSETSRGP---PPPPPPPPP 612
           LP        +PP PPPP P   +++           SP+P      P   P    P   
Sbjct: 309 LP--------APPDPPPPAPAGDAEEEDDEDGAMEVVSPLPRPRQHYPLGFPKRRRPTWT 360

Query: 613 PAFSGKDSSAVRSTSSIVPPPP----PPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPS 668
           P  S +D SA R        P           + + +G      T    P P   P P  
Sbjct: 361 PPSSLEDLSAGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTP-- 418

Query: 669 FSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNS 728
                    P+     +PPPP  P PS           +  GP PPP   PP PA  P  
Sbjct: 419 --------APTPVPASAPPPPATPLPSAEP-------GSDDGPAPPPERQPPAPATEP-- 461

Query: 729 SKALLSAPPHPSPTSRSSQPSFHPPPPPPPP 759
                 AP  P   +R +  +     PP PP
Sbjct: 462 ------APDDPDDATRKALDALRERRPPEPP 486

Length = 3151

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 58.3 bits (141), Expect = 2e-08
 Identities = 43/242 (17%), Positives = 56/242 (23%), Gaps = 27/242 (11%)

Query: 673 GSSSLPSTSSIGSPPPPPP--------PPPSFSGRSSIVPSTTSKGPPPPPP--PPPPPP 722
           G    P   +                    S    +  V +  +      PP  PPP P 
Sbjct: 17  GGEFFPRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPG 76

Query: 723 AAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQ 782
              P +           +    S      P PP P  P PPPP                 
Sbjct: 77  TEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPP----------------- 119

Query: 783 PAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPA 842
              P  PPP P    + +      P         A    P       A S     P    
Sbjct: 120 TPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSP 179

Query: 843 PKLPTAPSPPSRGVMPSPPPPPGVKSSSVPPPPLPSVGKGKVTSGPASHGRGRLNSGVSH 902
            +   APS P     PS PP            P+ +       +   S       S    
Sbjct: 180 EETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDS 239

Query: 903 AP 904
           + 
Sbjct: 240 SS 241

Length = 1352

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 58.3 bits (141), Expect = 2e-08
 Identities = 35/198 (17%), Positives = 55/198 (27%), Gaps = 31/198 (15%)

Query: 497 PPCFPPSPSSPQSIAPTPPLPP-------HSSPASASGVIPLPMSAPPPSPPPPPPPPLP 549
                 + +   + AP    P          + A   G  P P  AP  +P     P   
Sbjct: 408 AAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAA 467

Query: 550 SSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPP 609
                    P P      +         P    P    +  D  P P E        P P
Sbjct: 468 G--------PRPVAAAAAA--------APARAAPAAAPAPADDDPPPWEELPPEFASPAP 511

Query: 610 -PPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPS 668
             P  A +G  + ++   ++  P        P+     ++  P  ++   P   P PP +
Sbjct: 512 AQPDAAPAGWVAESIPDPATADPDDAFETLAPA---PAAAPAPRAAAATEPVVAPRPPRA 568

Query: 669 FSGKGSSSLPSTSSIGSP 686
                +S LP       P
Sbjct: 569 ----SASGLPDMFDGDWP 582

Length = 700

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 57.0 bits (138), Expect = 2e-08
 Identities = 26/101 (25%), Positives = 32/101 (31%)

Query: 500 FPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSP 559
              SPS P S +P  P  P      +S        AP       PPP   S TN S    
Sbjct: 180 ASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPG 239

Query: 560 PPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETS 600
           P  PPP P        +  P PP      +        + +
Sbjct: 240 PAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITLDDDA 280

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 57.9 bits (140), Expect = 2e-08
 Identities = 29/183 (15%), Positives = 48/183 (26%), Gaps = 5/183 (2%)

Query: 691 PPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSF 750
           P           VP+  +   P P         A    +   ++     +   +++  + 
Sbjct: 360 PAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAA- 418

Query: 751 HPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSI 810
                  PP  P PP++  +  +                                PP   
Sbjct: 419 AATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADS----RCDERDAQPPADS 474

Query: 811 GCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPPPGVKSSS 870
           G     A   PP        R+ A     P A     AP+  SR   P+   PP  ++  
Sbjct: 475 GSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARP 534

Query: 871 VPP 873
             P
Sbjct: 535 PTP 537

Length = 830

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 57.8 bits (140), Expect = 2e-08
 Identities = 26/134 (19%), Positives = 36/134 (26%), Gaps = 12/134 (8%)

Query: 744 RSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMA 803
            ++  +  P     P  P     +         +A  +    P   P    S   + P A
Sbjct: 367 AAAAEAAAPAEKKTPARPEAAAPA------AAPVAQAAAAPAPAAAPAAAASAPAAPPAA 420

Query: 804 PPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPP 863
            PP P        A   P   P   PA     L P PPA   P   + P R         
Sbjct: 421 APPAPVAA----PAAAAPAAAPAAAPAA--VALAPAPPAQAAPETVAIPVRVAPEPAVAS 474

Query: 864 PGVKSSSVPPPPLP 877
                ++ P     
Sbjct: 475 AAPAPAAAPAAARL 488

Length = 618

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 57.3 bits (138), Expect = 2e-08
 Identities = 61/264 (23%), Positives = 75/264 (28%), Gaps = 12/264 (4%)

Query: 472 PIDQVSNETVLSSLHQQSLVLTEGNPPCFPPSPSSPQSIAPTPPLPPHSSPASASGVIPL 531
           P     +E   + L Q +  L     P  P      QS AP     P   P      +P 
Sbjct: 53  PEQVAKHELADAPLQQVNAALPPAPAPQSPQPDQQQQSQAPPSHQYPSQLPPQQVQSVPQ 112

Query: 532 PMSAPPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKD 591
             +       PPP  P P          P PPP +P          PP  P         
Sbjct: 113 QPTPQQEPYYPPPSQPQPPPAQQPQAQQPQPPPQVPQQQQ---YQSPPQQPQYQQNPPPQ 169

Query: 592 FSPMPSETSRGPPPPPPPPP--PPAFSGKDSSAVRSTSSIVPPPP----PPPPPPSFYGK 645
               P  +   P   P  P   PP      S A++   S  PP      PP P P  YG 
Sbjct: 170 AQSAPQVSGLYPEESPYQPQSYPPNEPLPSSMAMQPPYSGAPPSQQFYGPPQPSPYMYGG 229

Query: 646 GSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPS 705
                 S    G  PPP      +   G    P +           P  S    S+  PS
Sbjct: 230 PGGRPNSGFPSGQQPPPSQGQEGYGYSGP---PPSKGNHGSVASYAPQGSSQSYSTAYPS 286

Query: 706 TTSKGPPPPPPPPPPPPAAGPNSS 729
             +    P   P    P +G  S 
Sbjct: 287 LPAATVLPQALPMSSAPMSGGGSG 310

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1)

 Score = 58.3 bits (140), Expect = 2e-08
 Identities = 67/347 (19%), Positives = 99/347 (28%), Gaps = 20/347 (5%)

Query: 524 SASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPP 583
           S   V  L    P  +   P  P LP ++    +S   P    P+ T +   S  P    
Sbjct: 431 SVIFVYTLVHVEPHKTTAVPTTPSLPPASTGPTVSTADPTSGTPTGTTS---STLPEDTS 487

Query: 584 PPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFY 643
           P   ++       S T     P    P     S   ++   +   I        PP    
Sbjct: 488 PTSRTTSATPNATSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGTT 547

Query: 644 GKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIV 703
              ++T P  +   P      P  + +    +S  +T   G+   P    P     S   
Sbjct: 548 SVPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSSHST 607

Query: 704 PSTTSKGPPPPPPPPPP---------PPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPP 754
           P + S    P      P          P+    +  + LS  P P  TS+ S P      
Sbjct: 608 PRSNSTSTTPLLTSAHPTGGENITEETPSVPSTTHVSTLSPGPGPGTTSQVSGPGNSSTS 667

Query: 755 PPPPPPP-----PPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPS 809
             P         P P ++     +  + A  +  +         K  S S  MA   P +
Sbjct: 668 RYPGEVHVTEGMPNPNATSPSAPSGQKTAVPTVTSTGGKANSTTKETSGSTLMASTSPHT 727

Query: 810 IGCKPINAPRP---PPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPS 853
                   P       PP      R       PP   K  T P PP+
Sbjct: 728 NEGAFRTTPYNATTYLPPSTSSKLRPRWTFTSPPVTTKQATVPVPPT 774

This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 57.5 bits (139), Expect = 2e-08
 Identities = 26/107 (24%), Positives = 36/107 (33%), Gaps = 14/107 (13%)

Query: 718 PPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQL 777
           P P P     ++ A     P P+P++R    +    PP  P      P  +         
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVP-------- 413

Query: 778 APTSQPAVPPPPPPLPKSCSTSIPM------APPPPPSIGCKPINAP 818
                P VP  P   PK    +IP+       PP PP    K + A 
Sbjct: 414 PRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKALIAD 460

Length = 585

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 57.7 bits (140), Expect = 3e-08
 Identities = 27/139 (19%), Positives = 40/139 (28%), Gaps = 17/139 (12%)

Query: 653 TSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPP 712
            +     P    P  + +   ++  P      +  P     P+ +      P+      P
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAP-----AAAAPAAAAAPAPAAAPQPAPAPAPAPAP 441

Query: 713 PPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKIT 772
           P P    P   A      A  SA P P+P +     +   P PP  P P   P       
Sbjct: 442 PSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAP------- 494

Query: 773 NKLQLAPTSQPAVPPPPPP 791
                A  + PA P     
Sbjct: 495 -----AAPAAPAAPAGADD 508

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 57.3 bits (139), Expect = 3e-08
 Identities = 30/133 (22%), Positives = 42/133 (31%), Gaps = 10/133 (7%)

Query: 704 PSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPP 763
            +       P      P  A  P ++     AP   +  + ++ P    P P P P PP 
Sbjct: 390 GAGAPAAAAPSAAAAAPAAAPAPAAA-----APAAAAAPAPAAAPQ-PAPAPAPAPAPPS 443

Query: 764 PPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPP 823
           P  +             +  A P P P      + +   APP  P+    P  AP  P  
Sbjct: 444 PAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPA----PAAAPAAPAA 499

Query: 824 PPPLGPARSGAVL 836
           P     A   A L
Sbjct: 500 PAAPAGADDAATL 512

Length = 824

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 57.1 bits (138), Expect = 3e-08
 Identities = 43/216 (19%), Positives = 53/216 (24%), Gaps = 21/216 (9%)

Query: 529 IPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFS 588
           I +  SA  P+PPPP               P P   P            PP  P      
Sbjct: 86  ITVDPSAGEPAPPPPHARRTSEPE-----LPRPGRRPYEGYGGPRADDRPPGLPRQDQLP 140

Query: 589 SKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSS 648
           +      P+   R  P   P         +             PP  P   P+ Y     
Sbjct: 141 TAR-PAYPAYQQRPEPGAWPRAADDYGWQQQRLG--------FPPRAPYASPASYAPEQE 191

Query: 649 TMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTS 708
                   G P            +     P      +  P PPP      R    P    
Sbjct: 192 RDREPYDAGRPEYDQRRRDYDHPRPDWDRPRRDR--TDRPEPPPGAGHVHRGGPGPPERD 249

Query: 709 KGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSR 744
             P  P  P  P P A   +      AP    PT+R
Sbjct: 250 DAPVVPIRPSAPGPLAAQPA-----PAPGPGEPTAR 280

Length = 617

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 56.2 bits (136), Expect = 3e-08
 Identities = 33/130 (25%), Positives = 41/130 (31%), Gaps = 9/130 (6%)

Query: 489 SLVLTEGNPPCFPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPP-----SPPPP 543
              L E +      + +S  S       P  +SP+      P   S P P     SP   
Sbjct: 151 GPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDS 210

Query: 544 PPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGP 603
             PP PSS  +    P P  P  PS        P  PPPPP        +  P+  S   
Sbjct: 211 SLPPAPSSFQSDTPPPSPESPTNPSPPP----GPAAPPPPPVQQVPPLSTAKPTPPSASA 266

Query: 604 PPPPPPPPPP 613
            P P      
Sbjct: 267 TPAPIGGITL 276

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 57.3 bits (139), Expect = 4e-08
 Identities = 32/123 (26%), Positives = 47/123 (38%), Gaps = 8/123 (6%)

Query: 495 GNPPCFPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNN 554
              P      ++  + A  P  P  ++PA+A+   P     P P+P P P PP P+    
Sbjct: 391 AGAPAAAAPSAAAAAPAAAPA-PAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAP 449

Query: 555 SFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPA 614
           +  +P PPP   PS+      +  P P   P       +P P         P  P  P A
Sbjct: 450 AGGAPSPPPAAAPSAQPAPAPAAAPEPTAAP-------APAPPAAPAPAAAPAAPAAPAA 502

Query: 615 FSG 617
            +G
Sbjct: 503 PAG 505

Length = 824

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 57.2 bits (138), Expect = 4e-08
 Identities = 59/375 (15%), Positives = 95/375 (25%), Gaps = 50/375 (13%)

Query: 515 PLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNF 574
           P               +  + P P           +    + ++        P +     
Sbjct: 360 PAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAA 419

Query: 575 ISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPP 634
            +    PP  P       +P  +            P P        ++  S        P
Sbjct: 420 ATRAEAPPAAP-------APPATADRGDDAADGDAPVPAK--ANARASADSRCDERDAQP 470

Query: 635 PPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPP 694
           P     +      +   +     P    P      +   + +  + S   +P    PP P
Sbjct: 471 PADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAP 530

Query: 695 SFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPP 754
                           PP P    P   A G  ++  +L        + R ++ +    P
Sbjct: 531 EAR-------------PPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKP 577

Query: 755 PPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKP 814
              P   P P             AP     VP P        +     A     +     
Sbjct: 578 AAAPAAAPKPA------------APRVAVQVPTPRARAATGDAPPNGAARAEQAA----- 620

Query: 815 INAPRPPPP----PP----PLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPPPGV 866
             +   PPP    PP    PL  A  G   P     P   + P        P+  P P V
Sbjct: 621 -ESRGAPPPWEDIPPDDYVPLS-ADEGFGGPDDGFVPVFDSGPDDVRVAPKPADAPAPPV 678

Query: 867 KSSSVPPP-PLPSVG 880
            +  +PP  PL ++G
Sbjct: 679 DTRPLPPAIPLDAIG 693

Length = 830

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 57.0 bits (138), Expect = 4e-08
 Identities = 26/144 (18%), Positives = 40/144 (27%), Gaps = 24/144 (16%)

Query: 721 PPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPT 780
           P AA   ++ A    P  P   + ++ P         P P   P ++             
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPV--AQAAAAPAPAAAPAAA------------- 410

Query: 781 SQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPP 840
           +     PP    P   +     AP   P        A     P PP   A     +P   
Sbjct: 411 ASAPAAPPAAAPPAPVAAPAAAAPAAAP----AAAPAAVALAPAPPAQAAPETVAIP--- 463

Query: 841 PAPKLPTAPSPPSRGVMPSPPPPP 864
              ++   P+  S    P+  P  
Sbjct: 464 --VRVAPEPAVASAAPAPAAAPAA 485

Length = 618

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 57.4 bits (138), Expect = 4e-08
 Identities = 64/290 (22%), Positives = 86/290 (29%), Gaps = 15/290 (5%)

Query: 633 PPPPPPPPSFYGKGSSTMPSTSSIGPP----PPPPPPPPSFSGKGS--SSLPSTSSIGSP 686
           P P   P       S T    +S  P     P P P P       +  S +P TS+    
Sbjct: 565 PAPGLGPLQIQPLTSPTTSQLASSAPSYAQTPWPVPHPSQTPEPPTTQSHIPETSAPRQW 624

Query: 687 PPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSK-ALLSAPPHPSPTSRS 745
           P P  P P    R   +       P P  PP        P  ++   +   P P+  +  
Sbjct: 625 PMPLRPIPMRPLRMQPITFNVLVFPTPHQPPQVEITPYKPTWTQIGHIPYQPSPTGANTM 684

Query: 746 SQPSFHPP---PPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPM 802
               + P    PPP  P P  PP++      +   A          P       +     
Sbjct: 685 LPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRA 744

Query: 803 APPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPP 862
            PP       +P  A      PP   P       P P P P+ P AP    RG     PP
Sbjct: 745 RPPAAAPGRARPPAAAPGRARPPAAAPGA-----PTPQPPPQAPPAPQQRPRGAPTPQPP 799

Query: 863 PPGVKSSSVPPPPLPSVGKGKVTSGPASHGRGRLNSGVSHAPKKASLKPL 912
           P    +S    P      +G           G +  G     K A+L+  
Sbjct: 800 PQAGPTSMQLMPRAAPGQQGPTKQILRQLLTGGVKRGRPSLKKPAALERQ 849

Length = 991

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 56.9 bits (138), Expect = 4e-08
 Identities = 40/246 (16%), Positives = 54/246 (21%), Gaps = 68/246 (27%)

Query: 675 SSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLS 734
            S   +    +  P  P P             ++         P PPPA           
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 735 APPHPSPTSRSSQPSFHPPPPPPPPPPP--------------PPPSS------------- 767
                            PP      PP                 PS+             
Sbjct: 421 PTEPSPT----------PPANAANAPPSLNLEELWQQILAKLELPSTRMLLSQQAELVSL 470

Query: 768 -------------LGKITNKLQLAP----------------TSQPAVPPPPPPLPKSCST 798
                        LG + ++  L                  +   +        P    +
Sbjct: 471 DSNRAVIAVSPNWLGMVQSRKPLLEQAFAKVLGRSIKLNLESQSGSASNTAKTPPPPQKS 530

Query: 799 SIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMP 858
             P AP PP          P PPPPPP    A S A    P  +   P  P  P+    P
Sbjct: 531 PPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTP--SP 588

Query: 859 SPPPPP 864
           +    P
Sbjct: 589 TKDSSP 594

Length = 620

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 55.8 bits (135), Expect = 5e-08
 Identities = 34/168 (20%), Positives = 38/168 (22%), Gaps = 34/168 (20%)

Query: 714 PPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITN 773
            P P PP      +              T+ S          P    P  PPSS      
Sbjct: 147 DPNPGPPLDEEDED----------ADVATTNSDNSFPGEDADPASASPSDPPSS------ 190

Query: 774 KLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSG 833
                    P VP  P P     S S    PP P S            P  P        
Sbjct: 191 --------SPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPS------- 235

Query: 834 AVLPPPPPAPKLPTAPSPPSRGVMPSPPPPPGVKSSSVPPPPLPSVGK 881
              PPP PA   P             P PP    + +           
Sbjct: 236 ---PPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITLDDDA 280

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 56.7 bits (137), Expect = 5e-08
 Identities = 26/120 (21%), Positives = 35/120 (29%), Gaps = 19/120 (15%)

Query: 654 SSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPP 713
           + + P P P P  P+ +   S   P+ +    P                 P         
Sbjct: 358 ALLVPVPAPQPAKPTAAAP-SPVRPTPAPSTRPKAAAAANI---------PPKEPVRETA 407

Query: 714 PPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITN 773
            PPP PP P A P          PH   ++     +  P    P   PP PP    K   
Sbjct: 408 TPPPVPPRPVAPP---------VPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKALI 458

Length = 585

>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional

 Score = 56.3 bits (136), Expect = 6e-08
 Identities = 35/203 (17%), Positives = 45/203 (22%), Gaps = 13/203 (6%)

Query: 527 GVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPC 586
            + P   +             +P          P      P S   +   PP P P PP 
Sbjct: 53  DLYPPRETGSGGGVATSTIYTVPRP-----PRGPEQTLDKPDSLPASRELPPGPTPVPPG 107

Query: 587 FSSKDFSPMPSETSRGPPP--PPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYG 644
                 SP     S  P        P   A  G+ +S+    S       PPP       
Sbjct: 108 GFRGASSPRLGADSTSPRFLYQVNFPVILAPIGESNSSSEELSEEEEHSRPPPSESLKVK 167

Query: 645 KGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVP 704
            G    P   S            S     +    +    GS    P      SG    + 
Sbjct: 168 NGGKVYPKGFSK-----HKTHKRSEFSGLTKK-AARKRKGSFVFKPSQLKELSGSLKNLL 221

Query: 705 STTSKGPPPPPPPPPPPPAAGPN 727
                    P     P P     
Sbjct: 222 HLDDSAETDPATRQVPVPVHVLY 244

Length = 580

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 56.1 bits (136), Expect = 8e-08
 Identities = 30/126 (23%), Positives = 47/126 (37%), Gaps = 10/126 (7%)

Query: 644 GKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIV 703
           G G+    + S+    P   P P + +   +++ P+ ++   P P P P P         
Sbjct: 390 GAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAA-PAPAAAPQPAPAPAPAP--------- 439

Query: 704 PSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPP 763
              +  G  P    P PPPAA P++  A   A       + +  P   P P   P  P  
Sbjct: 440 APPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAA 499

Query: 764 PPSSLG 769
           P +  G
Sbjct: 500 PAAPAG 505

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 56.1 bits (136), Expect = 9e-08
 Identities = 24/136 (17%), Positives = 37/136 (27%), Gaps = 23/136 (16%)

Query: 632 PPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPP 691
             P    P +     ++     ++       P P  +                +P P P 
Sbjct: 392 GAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAA-----------PQPAPAPAPAPA 440

Query: 692 PPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFH 751
           PP       +          PPP   P   PA  P       +A P P+     + P+  
Sbjct: 441 PPS-----PAGNAPAGGAPSPPPAAAPSAQPAPAP-------AAAPEPTAAPAPAPPAAP 488

Query: 752 PPPPPPPPPPPPPPSS 767
            P   P  P  P   +
Sbjct: 489 APAAAPAAPAAPAAPA 504

Length = 824

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 56.1 bits (135), Expect = 1e-07
 Identities = 48/212 (22%), Positives = 63/212 (29%), Gaps = 23/212 (10%)

Query: 713  PPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKIT 772
            P      P P  G         AP   +P             P  P   P  P  L  I 
Sbjct: 2489 PFAAGAAPDPGGGGPPDPDAPPAPSRLAPAIL----------PDEPVGEPVHPRMLTWIR 2538

Query: 773  NKLQLAPTSQPAVPPPPPPLP------KSCSTSIPMAPPPPPSIGCKPINAPRPPPPPP- 825
               +LA       PPP PP        +S     P   P  P++  +      PP     
Sbjct: 2539 GLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARP 2598

Query: 826  --PLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPPPGVKSSSVPPPP----LPSV 879
              P+          PP P P    AP PP     P+   P      +VPPP      P+ 
Sbjct: 2599 RAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAP 2658

Query: 880  GKGKVTSGPASHGRGRLNSGVSHAPKKASLKP 911
            G+          GR    S     P++ + +P
Sbjct: 2659 GRVSRPRRARRLGRAAQASSPPQRPRRRAARP 2690

Length = 3151

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 55.9 bits (135), Expect = 1e-07
 Identities = 34/175 (19%), Positives = 42/175 (24%), Gaps = 16/175 (9%)

Query: 687 PPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSS 746
            P   P       + + P+   +G    PP         P   +    A    S T+   
Sbjct: 760 NPSLVPAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKR 819

Query: 747 QPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPP 806
           +   H P        P  P                  A   PPP      S S P A   
Sbjct: 820 KSRSHTPDGGSESSGPARPP----------------GAAARPPPARSSESSKSKPAAAGG 863

Query: 807 PPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPP 861
                        P P   P   A   A    PP     P     P   + P PP
Sbjct: 864 RARGKNGRRRPRPPEPRARPGAAAPPKAAAAAPPAGAPAPRPRPAPRVKLGPMPP 918

Length = 1352

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 55.3 bits (133), Expect = 2e-07
 Identities = 53/237 (22%), Positives = 71/237 (29%), Gaps = 17/237 (7%)

Query: 690 PPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPS 749
           P PPP     +   P T      PPPPP    P         +  A    +P        
Sbjct: 255 PAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAP-------- 306

Query: 750 FHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPS 809
                P PP PPPP P+   +  +    A      +P P    P            PP S
Sbjct: 307 --LALPAPPDPPPPAPAGDAEEEDDEDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTPPSS 364

Query: 810 I---GCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPPPGV 866
           +        +  R   P      AR  A      P     T P+ P    +P+P P P  
Sbjct: 365 LEDLSAGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVP 424

Query: 867 KSSSVPPPPLPSVGKGKVTSGPASHGRGR----LNSGVSHAPKKASLKPLHWVKVTR 919
            S+  PP       +     GPA     +            P  A+ K L  ++  R
Sbjct: 425 ASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDATRKALDALRERR 481

Length = 3151

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 54.9 bits (133), Expect = 2e-07
 Identities = 23/140 (16%), Positives = 38/140 (27%), Gaps = 6/140 (4%)

Query: 501 PPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPP 560
           PP  ++P + A     P  +     +  +P P ++ P   P  P P   S      L+  
Sbjct: 371 PPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTS----QLLAAR 426

Query: 561 PPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDS 620
                   +T      P       P   +     + S           P    A+  K +
Sbjct: 427 QQLQRAQGATKAKKSEPAAASRARP--VNSALERLASVRPAPSALEKAPAKKEAYRWKAT 484

Query: 621 SAVRSTSSIVPPPPPPPPPP 640
           + V      V  P       
Sbjct: 485 NPVEVKKEPVATPKALKKAL 504

Length = 647

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.8 bits (132), Expect = 2e-07
 Identities = 28/120 (23%), Positives = 34/120 (28%), Gaps = 27/120 (22%)

Query: 752 PPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIG 811
           P P P  P    P             AP+++P         PK           P     
Sbjct: 364 PAPQPAKPTAAAPSPVRPTP------APSTRPKAAAAANIPPK----------EPVRETA 407

Query: 812 CKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSP-PSRGVMPSPPPPPGVKSSS 870
             P   PRP  PP P            P  APKL  A  P   +     P PP   + + 
Sbjct: 408 TPPPVPPRPVAPPVP----------HTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKAL 457

Length = 585

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 54.0 bits (130), Expect = 4e-07
 Identities = 35/179 (19%), Positives = 47/179 (26%), Gaps = 13/179 (7%)

Query: 651 PSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKG 710
              +         PP  + +          S   +           S   +    + S G
Sbjct: 775 LEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESSG 834

Query: 711 PPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGK 770
           P  PP     PP A  + S     A        ++ +    PP P   P    PP +   
Sbjct: 835 PARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKA--- 891

Query: 771 ITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGC---KPINAPRPPPPPPP 826
                  A  + PA  P P P P       PM P  P   G     P      P P   
Sbjct: 892 -------AAAAPPAGAPAPRPRPAPRVKLGPMPPGGPDPRGGFRRVPPGDLHTPAPSAA 943

Length = 1352

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 53.8 bits (130), Expect = 4e-07
 Identities = 30/165 (18%), Positives = 44/165 (26%), Gaps = 26/165 (15%)

Query: 477 SNETVLSSLHQQSLVLTEGNPPCFPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAP 536
           S       L  +   L             +  + +     P  +   +A+        AP
Sbjct: 366 SASDDERGLLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAP 425

Query: 537 PPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMP 596
             +P P P P             P PP P  ++      SPPP   P    +    +   
Sbjct: 426 AAAPQPAPAPA----------PAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPE 475

Query: 597 SETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPS 641
              +  P PP  P P  A                P  P  P  P+
Sbjct: 476 PTAAPAPAPPAAPAPAAA----------------PAAPAAPAAPA 504

Length = 824

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 54.0 bits (130), Expect = 4e-07
 Identities = 39/185 (21%), Positives = 47/185 (25%), Gaps = 18/185 (9%)

Query: 488 QSLVLTEGNPPCFPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPP 547
           Q ++  E           +PQ   P   + P   P   +          PP  P PP   
Sbjct: 151 QKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGH 210

Query: 548 LPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPP--P 605
                   FL  P   P  P         PP  P  PP        P+      G     
Sbjct: 211 PEQVQPQQFLPAPSQAPAQP-------PLPPQLPQQPP--------PLQQPQFPGLSQQM 255

Query: 606 PPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKG-SSTMPSTSSIGPPPPPPP 664
           PPPPP PP    +             P P P  P            P    +   P    
Sbjct: 256 PPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQ 315

Query: 665 PPPSF 669
             P F
Sbjct: 316 RGPQF 320

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.0 bits (130), Expect = 4e-07
 Identities = 26/121 (21%), Positives = 37/121 (30%), Gaps = 20/121 (16%)

Query: 503 SPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPPPP 562
              +PQ   PT   P    P  A    P        +   PP  P+  +      + PPP
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPTPA----PSTRPKAAAAANIPPKEPVRET------ATPPP 411

Query: 563 PPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSA 622
            PP P +       P P  P      ++   P+  +    P   PP PP        +  
Sbjct: 412 VPPRPVAP------PVPHTPESAPKLTRAAIPVDEK----PKYTPPAPPKEEEKALIADG 461

Query: 623 V 623
            
Sbjct: 462 D 462

Length = 585

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score = 53.8 bits (129), Expect = 4e-07
 Identities = 60/234 (25%), Positives = 74/234 (31%), Gaps = 22/234 (9%)

Query: 659 PPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPP----PPPPSFSGRSSIVPSTTSKGPPPP 714
           P    PP  S +  G   +P+       P PP    PP P       + P T  +   PP
Sbjct: 324 PSQRVPPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPYTAYEDLKPP 383

Query: 715 PPPPPPPPAAGPNSSK------ALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSL 768
             P P PP++ P SSK              PSP S S+ P   P         P  P   
Sbjct: 384 TSPIPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSP--- 440

Query: 769 GKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLG 828
                   L P + P+   P    P   STS   A P           A  PP    PL 
Sbjct: 441 --YARYEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPLS 498

Query: 829 PARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPPPGVKSSSVPPPPLPSVGKG 882
           P      L PP       T+PSP +     +P     V       PP     + 
Sbjct: 499 PYAVYDDLKPP-------TSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQ 545

Length = 576

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 54.1 bits (131), Expect = 4e-07
 Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 17/98 (17%)

Query: 669 FSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNS 728
           F+  G  S  + ++  +        P+         +  +K P  P P PP   A     
Sbjct: 33  FADYGPGSTAAPTAAAAAAAAAASAPA--------AAPAAKAPAAPAPAPPAAAAP---- 80

Query: 729 SKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPS 766
                +APP P+  + ++     PP       P     
Sbjct: 81  -----AAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAV 113

Length = 1228

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 53.8 bits (130), Expect = 5e-07
 Identities = 30/115 (26%), Positives = 36/115 (31%), Gaps = 10/115 (8%)

Query: 501 PPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPP 560
           PP+P+     AP    P   +PA A+         P   PP         S       P 
Sbjct: 682 PPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPL 741

Query: 561 PPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAF 615
           PP P  P         PPPPP P P           +  +  PPP PP       
Sbjct: 742 PPEPDDPPDPAGAPAQPPPPPAPAP----------AAAPAAAPPPSPPSEEEEMA 786

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 53.8 bits (130), Expect = 5e-07
 Identities = 28/143 (19%), Positives = 38/143 (26%), Gaps = 24/143 (16%)

Query: 602 GPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPP 661
             P      P  A                 P P    P +      +   +      P P
Sbjct: 397 AAPSAAAAAPAAA-----------------PAPAAAAPAA--AAAPAPAAAPQPAPAPAP 437

Query: 662 PPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPP 721
            P PP       +   PS     +P   P P P+ +        T +  P PP  P P  
Sbjct: 438 APAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAA-----PEPTAAPAPAPPAAPAPAA 492

Query: 722 PAAGPNSSKALLSAPPHPSPTSR 744
             A P +  A   A    +   R
Sbjct: 493 APAAPAAPAAPAGADDAATLRER 515

Length = 824

>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional

 Score = 53.2 bits (128), Expect = 5e-07
 Identities = 40/235 (17%), Positives = 52/235 (22%), Gaps = 34/235 (14%)

Query: 497 PPCFPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSF 556
           P           S   T P PP     +      LP S   P  P P PP          
Sbjct: 57  PRETGSGGGVATSTIYTVPRPPRGPEQTLDKPDSLPASRELPPGPTPVPP--------GG 108

Query: 557 LSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFS 616
                 P     ST+  F+     P      +    S   SE          PPP  +  
Sbjct: 109 FRGASSPRLGADSTSPRFLYQVNFPVIL---APIGESNSSSEELSEEEEHSRPPPSESLK 165

Query: 617 GKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSS 676
            K+   V                 S +   +    +    G     P      SG    S
Sbjct: 166 VKNGGKVYPKGF----SKHKTHKRSEFSGLTK-KAARKRKGSFVFKPSQLKELSG----S 216

Query: 677 LPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKA 731
           L +   +       P                 + P P     PP          A
Sbjct: 217 LKNLLHLDDSAETDPATR--------------QVPVPVHVLYPPLLTEYVPYKPA 257

Length = 580

>gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau; Validated

 Score = 53.6 bits (128), Expect = 5e-07
 Identities = 31/174 (17%), Positives = 47/174 (27%), Gaps = 11/174 (6%)

Query: 506 SPQSIAPTPPLPPHSSPASASGV-----IPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPP 560
           +P   A    +P     A          +P    AP  +          + +  +     
Sbjct: 405 TPVQTASAAAMPSEGKTAGPVSNQENNDVPPWEDAPDEAQTAAGTAQTSAKSIQTASEAE 464

Query: 561 PPPPPLPS----STNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFS 616
            PP    S    + N         P   P  ++ +   + +ET     P  P        
Sbjct: 465 TPPENQVSKNKAADNETDAPLSEVPSENPIQATPNDEAVETETFAHEAPAEPFYGYGF-- 522

Query: 617 GKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFS 670
             +       + I PP      P    G G+        IG    P  PPP FS
Sbjct: 523 PDNDCPPEDGAEIPPPDWEHAAPADTAGGGADEEAEAGGIGGNNTPSAPPPEFS 576

Length = 709

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 52.9 bits (127), Expect = 7e-07
 Identities = 34/152 (22%), Positives = 45/152 (29%), Gaps = 28/152 (18%)

Query: 643 YGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSI 702
           +G+ +      S   P      P P ++  G +  P           P P P      + 
Sbjct: 622 FGRATVGEMIISGFPPVFKTALPRPDYNRGGEAGGP---------GVPGPVPVGMPAHTA 672

Query: 703 VPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPP 762
            PS  ++G P             P +  A L AP  P P          PPPP  P    
Sbjct: 673 RPSRVARGDP-----------VRPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPAAAG 721

Query: 763 PPPSSLGKITNKLQLAPTSQPAVPPPPPPLPK 794
           P P               S  A P P PP  +
Sbjct: 722 PAPCGSSL--------IASPTAPPEPEPPGAE 745

Length = 753

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 52.6 bits (127), Expect = 9e-07
 Identities = 22/126 (17%), Positives = 34/126 (26%), Gaps = 9/126 (7%)

Query: 750 FHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPS 809
           FHP  P P P  PP  ++          A  +    PP  P +P   +++   AP  P  
Sbjct: 359 FHPAAPLPEPEVPPQSAAPAASAQ--ATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLP 416

Query: 810 IGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPPPGVKSS 869
                + A R                       P   +   P +  +       P   + 
Sbjct: 417 ETTSQLLAARQQLQRAQ-------GATKAKKSEPAAASRARPVNSALERLASVRPAPSAL 469

Query: 870 SVPPPP 875
              P  
Sbjct: 470 EKAPAK 475

Length = 647

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.5 bits (126), Expect = 9e-07
 Identities = 22/119 (18%), Positives = 34/119 (28%), Gaps = 21/119 (17%)

Query: 627 SSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSP 686
           + +VP P P P  P+     ++  P   +  P   P     +       ++P    +   
Sbjct: 358 ALLVPVPAPQPAKPT----AAAPSPVRPTPAPSTRPKAAAAA-------NIPPKEPVRET 406

Query: 687 PPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRS 745
             PPP PP             +   P  P   P    A     +     PP P      
Sbjct: 407 ATPPPVPPR----------PVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEK 455

Length = 585

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 52.7 bits (127), Expect = 1e-06
 Identities = 28/151 (18%), Positives = 36/151 (23%), Gaps = 22/151 (14%)

Query: 744 RSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMA 803
           R    +     P    P     +                 A P P    P         A
Sbjct: 383 RRLGVAGGAGAPAAAAPSAAAAA---------------PAAAPAPAAAAP-------AAA 420

Query: 804 PPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPP 863
             P P+   +P  AP P P PP           P PPPA      P+P           P
Sbjct: 421 AAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAP 480

Query: 864 PGVKSSSVPPPPLPSVGKGKVTSGPASHGRG 894
                ++  P   P+          A     
Sbjct: 481 APAPPAAPAPAAAPAAPAAPAAPAGADDAAT 511

Length = 824

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 52.1 bits (125), Expect = 1e-06
 Identities = 38/195 (19%), Positives = 45/195 (23%), Gaps = 23/195 (11%)

Query: 474 DQVSNETVLSSLHQQSLVLTEGNPPCFPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPM 533
             +S E V + L Q+        PP        P   A  P   P   P           
Sbjct: 152 KMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHP 211

Query: 534 SAPPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFS 593
               P    P P   P+        PP  P   P      F       PPPP    +   
Sbjct: 212 EQVQPQQFLPAPSQAPAQ----PPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQ 267

Query: 594 PMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPST 653
             P   ++ PP   P P P                   P PPP  P           P  
Sbjct: 268 QPPQPQAQPPPQNQPTPHPG-----------LPQGQNAPLPPPQQPQLL--------PLV 308

Query: 654 SSIGPPPPPPPPPPS 668
                    P     
Sbjct: 309 QQPQGQQRGPQFREQ 323

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 52.2 bits (126), Expect = 1e-06
 Identities = 27/184 (14%), Positives = 48/184 (26%), Gaps = 19/184 (10%)

Query: 614 AFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKG 673
           AF              VPP    P   +     ++  P+ +   P  P  PPPP+     
Sbjct: 358 AFHPAAPLP----EPEVPPQSAAPAASA----QATAAPTAAVAPPQAPAVPPPPA----- 404

Query: 674 SSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALL 733
                +     + P P       + R  +  +  +         P     A P +S    
Sbjct: 405 ----SAPQQAPAVPLPETTSQLLAARQQLQRAQGA--TKAKKSEPAAASRARPVNSALER 458

Query: 734 SAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLP 793
            A   P+P++    P+           P             L+ A   +           
Sbjct: 459 LASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAAKLAA 518

Query: 794 KSCS 797
           ++  
Sbjct: 519 EAIE 522

Length = 647

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 52.2 bits (126), Expect = 1e-06
 Identities = 31/159 (19%), Positives = 42/159 (26%), Gaps = 21/159 (13%)

Query: 726 PNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAV 785
           P +       PP  +  + S+Q +  P     PP  P  P             P S P  
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPP-----------PPASAPQQ 409

Query: 786 PPPPPPLPKSCS-----TSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPP 840
            P  P    +         +  A     +   +P  A R  P    L   R  +V P P 
Sbjct: 410 APAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSAL--ERLASVRPAPS 467

Query: 841 PAPKLPTAPSPPSRGVMPSPPPPPGVKSSSVPPPPLPSV 879
              K P            +  P    K     P  L   
Sbjct: 468 ALEKAPAKKEAYRW---KATNPVEVKKEPVATPKALKKA 503

Length = 647

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.5 bits (126), Expect = 1e-06
 Identities = 24/123 (19%), Positives = 28/123 (22%), Gaps = 24/123 (19%)

Query: 604 PPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPP 663
           P P P P  P  +           S  P        P                  PPP P
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIP--------PKEPVRETATPPPVP 413

Query: 664 PPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPA 723
           P P +                 P P  P       R++I      K  PP PP       
Sbjct: 414 PRPVA----------------PPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKAL 457

Query: 724 AGP 726
              
Sbjct: 458 IAD 460

Length = 585

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score = 51.9 bits (124), Expect = 1e-06
 Identities = 59/275 (21%), Positives = 81/275 (29%), Gaps = 32/275 (11%)

Query: 593 SPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPS 652
           +PM    ++ P    PP    A  G      +  +   P PP    PP    K     P 
Sbjct: 314 TPMEELLAKIPSQRVPPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQ--PKAVVPRPL 371

Query: 653 TSSIG----PPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTS 708
           +         PP  P P P  S   SS      +  + P   P P S S    + P+   
Sbjct: 372 SPYTAYEDLKPPTSPIPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVE 431

Query: 709 K---------------GPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPP 753
                            PP  P P  P   +   SS + + A P  +P + ++  +  PP
Sbjct: 432 AKKTRPLSPYARYEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPP 491

Query: 754 PPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCK 813
               P  P      L   T     +P+    V    P            APP   +    
Sbjct: 492 ANMRPLSPYAVYDDLKPPT-----SPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQH 546

Query: 814 PINAPRPPPPPPPLGP-ARSGAVLPPPPPAPKLPT 847
                   P P PL P      + PP  P P    
Sbjct: 547 HAQ-----PKPRPLSPYTMYEDLKPPTSPTPSPVL 576

Length = 576

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 51.5 bits (124), Expect = 2e-06
 Identities = 26/159 (16%), Positives = 42/159 (26%), Gaps = 8/159 (5%)

Query: 731 ALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPP 790
           A++   P  +       P+   PP     P  P   +          A  +       P 
Sbjct: 586 AVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPA--------APAAPAPAGAAAAPA 637

Query: 791 PLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPS 850
               + +  +      P  +     +      P    G A +     P P AP  P   +
Sbjct: 638 EASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAA 697

Query: 851 PPSRGVMPSPPPPPGVKSSSVPPPPLPSVGKGKVTSGPA 889
           P      P+  PP G        PP  + G    +    
Sbjct: 698 PAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAAD 736

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 51.5 bits (124), Expect = 2e-06
 Identities = 27/134 (20%), Positives = 37/134 (27%), Gaps = 17/134 (12%)

Query: 596 PSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSS 655
           PS  +  P   P P      +    +   +      P P P PP       +   PS   
Sbjct: 399 PSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPP 458

Query: 656 IGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPP 715
              P   P P P+          +     +P P PP  P+        P+     P  P 
Sbjct: 459 AAAPSAQPAPAPA---------AAPEPTAAPAPAPPAAPA--------PAAAPAAPAAPA 501

Query: 716 PPPPPPPAAGPNSS 729
            P     AA     
Sbjct: 502 APAGADDAATLRER 515

Length = 824

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 51.8 bits (125), Expect = 2e-06
 Identities = 24/135 (17%), Positives = 34/135 (25%), Gaps = 20/135 (14%)

Query: 507 PQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPPPPPPPL 566
           P +  P P +PP S+        P   +    +P     PP   +        PPPP   
Sbjct: 361 PAAPLPEPEVPPQSAA-------PAASAQATAAPTAAVAPPQAPA-------VPPPPASA 406

Query: 567 PSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRST 626
           P        +P  P P            +             P         +S+  R  
Sbjct: 407 PQQ------APAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLA 460

Query: 627 SSIVPPPPPPPPPPS 641
           S    P      P  
Sbjct: 461 SVRPAPSALEKAPAK 475

Length = 647

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.5 bits (124), Expect = 2e-06
 Identities = 28/102 (27%), Positives = 38/102 (37%), Gaps = 9/102 (8%)

Query: 674 SSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALL 733
           S S  ++++  +PPPP   PP           T     P    PPP PP   P +++A  
Sbjct: 512 SQSGSASNTAKTPPPPQKSPPPP-------APTPPLPQPTATAPPPTPPPPPPTATQASS 564

Query: 734 SAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKL 775
           +AP      S    P   P  P P P     P  + K    L
Sbjct: 565 NAPAQIPADSSPPPPI--PEEPTPSPTKDSSPEEIDKAAKNL 604

Length = 620

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 51.1 bits (123), Expect = 2e-06
 Identities = 20/126 (15%), Positives = 29/126 (23%), Gaps = 27/126 (21%)

Query: 700 SSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPP 759
           +++ P   +      PPP   P A                              P  P  
Sbjct: 49  AALAPPAAAAPAAAQPPPAAAPAAVSR---------------------------PAAPAA 81

Query: 760 PPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPR 819
            P P      K     +    ++ A P  P     +       A      +      APR
Sbjct: 82  EPAPWLVEHAKRLTAQREQLVARAAAPAAPEAQAPAAPAERAAAENAARRLARAAAAAPR 141

Query: 820 PPPPPP 825
           P  P  
Sbjct: 142 PRVPAD 147

Length = 484

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.0 bits (122), Expect = 3e-06
 Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 5/91 (5%)

Query: 498 PCFPPSPSSPQSIAPTPPLP---PHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNN 554
           P   P P+ P + AP+P  P   P + P +A+     P      +  PPP PP P +   
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPV 421

Query: 555 SFLSPPPPPPPLPSSTNNNFISPPPPPPPPP 585
                P   P L  +       P   PP PP
Sbjct: 422 P--HTPESAPKLTRAAIPVDEKPKYTPPAPP 450

Length = 585

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 50.9 bits (122), Expect = 4e-06
 Identities = 33/167 (19%), Positives = 45/167 (26%), Gaps = 8/167 (4%)

Query: 608 PPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYG--KGSSTMPSTSSIGPPPPPPPP 665
             P  P      S  VR+ ++   P       P+     + +S   S S           
Sbjct: 775 LEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESSG 834

Query: 666 PPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAG 725
           P    G  +   P+ SS  S   P        G++        +    P    PP  AA 
Sbjct: 835 PARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAA 894

Query: 726 PNSSKALLSAPPHPSPTSRSSQPSFHPPP------PPPPPPPPPPPS 766
              + A    P           P   P P       PP     P PS
Sbjct: 895 APPAGAPAPRPRPAPRVKLGPMPPGGPDPRGGFRRVPPGDLHTPAPS 941

Length = 1352

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.5 bits (121), Expect = 4e-06
 Identities = 27/196 (13%), Positives = 43/196 (21%), Gaps = 59/196 (30%)

Query: 531 LPMSAPPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSK 590
           L + A  P+       P    T     + P    P  +        P       P     
Sbjct: 359 LRLLAFKPAAAAEAAAPAEKKT----PARPEAAAPAAA--------PVAQAAAAP----- 401

Query: 591 DFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTM 650
             +P  +  +    P  PP   P        A  +  +   P   P   P+         
Sbjct: 402 --APAAAPAAAASAPAAPPAAAP-------PAPVAAPAAAAPAAAPAAAPA--------- 443

Query: 651 PSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKG 710
                        P PP+ +   + ++P   +         P P                
Sbjct: 444 --------AVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAP---------------- 479

Query: 711 PPPPPPPPPPPPAAGP 726
              P      P   G 
Sbjct: 480 AAAPAAARLTPTEEGD 495

Length = 618

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.2 bits (120), Expect = 4e-06
 Identities = 27/113 (23%), Positives = 33/113 (29%), Gaps = 23/113 (20%)

Query: 580 PPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPP 639
           P P P        +P P   +  P   P          K    VR T      PPP PP 
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPK--EPVRET----ATPPPVPPR 415

Query: 640 PSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPP 692
           P          P      P P  P   P  +    +++P        PP PP 
Sbjct: 416 P--------VAP------PVPHTPESAPKLTR---AAIPVDEKPKYTPPAPPK 451

Length = 585

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.7 bits (122), Expect = 4e-06
 Identities = 23/76 (30%), Positives = 30/76 (39%)

Query: 539 SPPPPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSE 598
           S         P     S   P P PP    +      +PPPPPP     SS   + +P++
Sbjct: 514 SGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPAD 573

Query: 599 TSRGPPPPPPPPPPPA 614
           +S  PP P  P P P 
Sbjct: 574 SSPPPPIPEEPTPSPT 589

Length = 620

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 50.6 bits (121), Expect = 4e-06
 Identities = 31/168 (18%), Positives = 36/168 (21%), Gaps = 50/168 (29%)

Query: 558 SPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPM-PSETSRGPPPPPPPPPPPAFS 616
            PP     LP    N       P  P P           PS  +RG P  P         
Sbjct: 635 FPPVFKTALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDPVRPTA------- 687

Query: 617 GKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSS 676
                     +++  P  P P  P   G G         + PPP  P          S  
Sbjct: 688 --------HHAALRAPQAPRPGGPPGGGGG---------LPPPPDLPAAAGPAPCGSSLI 730

Query: 677 LPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAA 724
                      P  PP P                 PP           
Sbjct: 731 ---------ASPTAPPEP----------------EPPGAEQADGAENQ 753

Length = 753

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score = 49.9 bits (119), Expect = 5e-06
 Identities = 53/251 (21%), Positives = 76/251 (30%), Gaps = 28/251 (11%)

Query: 540 PPPPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSET 599
           P    PP    + +     P  P  P   S           PP P     +  SP  +  
Sbjct: 324 PSQRVPPKESDAADGPKPVPTKPVTPEAPSPPIE-----EEPPQPKAVVPRPLSPYTAYE 378

Query: 600 SRGPPPPPPPPPP----PAFSGKDSSAVRSTSSIVPPPPPPP--------PPPSFYGKGS 647
              PP  P P PP     +    D+ A  +   +VP P               +   +  
Sbjct: 379 DLKPPTSPIPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPL 438

Query: 648 STMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPP------PPPPPSFSGRSS 701
           S       + PP  P P  P+      SS  S  ++    P         PPP+     S
Sbjct: 439 SPYARYEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPLS 498

Query: 702 IVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPP 761
                    PP  P P  P     P+S+  ++       PT+ + +     P P P  P 
Sbjct: 499 PYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHHAQPKPRPLSPY 558

Query: 762 P-----PPPSS 767
                  PP+S
Sbjct: 559 TMYEDLKPPTS 569

Length = 576

>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1)

 Score = 50.2 bits (119), Expect = 6e-06
 Identities = 49/354 (13%), Positives = 83/354 (23%), Gaps = 22/354 (6%)

Query: 563 PPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSA 622
           P    S      +    P       ++    P  +  +     P    P    S      
Sbjct: 426 PDTTKSVIFVYTLVHVEPHKTTAVPTTPSLPPASTGPTVSTADPTSGTPTGTTSSTLPED 485

Query: 623 VRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSS 682
              TS      P    P       ++T P+T      P    P P   G  +++    + 
Sbjct: 486 TSPTSRTTSATPNATSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPPTG 545

Query: 683 IGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSS--KALLSAPPHPS 740
             S P    P  +     +   +      P            G  SS        P    
Sbjct: 546 TTSVPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSSH 605

Query: 741 PTSRSSQPSFHPPPPPPPP----------PPPPPPSSLGKITNKLQLAPTSQPAVPPPPP 790
            T RS+  S  P      P          P  P  + +  ++       TSQ + P    
Sbjct: 606 STPRSNSTSTTPLLTSAHPTGGENITEETPSVPSTTHVSTLSPGPGPGTTSQVSGPGNSS 665

Query: 791 PLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPAR----------SGAVLPPPP 840
                    +    P P +      +  +   P       +          S  +    P
Sbjct: 666 TSRYPGEVHVTEGMPNPNATSPSAPSGQKTAVPTVTSTGGKANSTTKETSGSTLMASTSP 725

Query: 841 PAPKLPTAPSPPSRGVMPSPPPPPGVKSSSVPPPPLPSVGKGKVTSGPASHGRG 894
              +     +P +      P     ++       P  +  +  V   P  H   
Sbjct: 726 HTNEGAFRTTPYNATTYLPPSTSSKLRPRWTFTSPPVTTKQATVPVPPTQHPDH 779

This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.8 bits (119), Expect = 6e-06
 Identities = 28/136 (20%), Positives = 36/136 (26%), Gaps = 28/136 (20%)

Query: 598 ETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIG 657
           E    P P P P  P            + S + P P P   P +                
Sbjct: 357 EALLVPVPAPQPAKP---------TAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETA 407

Query: 658 PPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPP 717
            PPP PP P +                 P P  P       R++I        P   PP 
Sbjct: 408 TPPPVPPRPVA----------------PPVPHTPESAPKLTRAAIPVDEK---PKYTPPA 448

Query: 718 PPPPPAAGPNSSKALL 733
           PP        +   +L
Sbjct: 449 PPKEEEKALIADGDVL 464

Length = 585

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 50.1 bits (119), Expect = 6e-06
 Identities = 73/364 (20%), Positives = 100/364 (27%), Gaps = 33/364 (9%)

Query: 530 PLPMSAPPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSS 589
           P P+  P  +P PP        T+     P P  P          I+      P P    
Sbjct: 596 PWPVPHPSQTPEPPTTQSHIPETSAPRQWPMPLRPIPMRPLRMQPITFNVLVFPTPHQPP 655

Query: 590 KDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSST 649
           +     P + +       P  P P  +        +  ++ PPP  P P           
Sbjct: 656 Q-VEITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRA 714

Query: 650 MPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSK 709
               ++ G   PP   P       ++   +     +P    PP               + 
Sbjct: 715 QRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPP---------------AA 759

Query: 710 GPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPP----PPPPP 765
            P    PP   P A  P        APP P    R + P+  PPP   P      P   P
Sbjct: 760 APGRARPPAAAPGAPTPQPPP---QAPPAPQQRPRGA-PTPQPPPQAGPTSMQLMPRAAP 815

Query: 766 SSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPP 825
              G     L+   T       P    P +        P P P  G        P   PP
Sbjct: 816 GQQGPTKQILRQLLTGGVKRGRPSLKKPAALERQAAAGPTPSPGSGTSDKIVQAPVFYPP 875

Query: 826 PLGPARSGAVLPPPPP-----APKLPTAPSPPSRGVMPSP----PPPPGVKSSSVPPPPL 876
            L P +    L            + PT  +   RGV P      PP    K+ +      
Sbjct: 876 VLQPIQVMRQLGSVRAAAASTVTQAPTEYTGERRGVGPMHPTDIPPSKRAKTDAYVESQP 935

Query: 877 PSVG 880
           P  G
Sbjct: 936 PHGG 939

Length = 991

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 50.0 bits (120), Expect = 7e-06
 Identities = 24/141 (17%), Positives = 41/141 (29%), Gaps = 7/141 (4%)

Query: 501 PPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPP 560
           P +    + +             +     P   +    +  P   P   ++       P 
Sbjct: 365 PSASDDERGLLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAA------PA 418

Query: 561 PPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDS 620
               P P++      +P P P PP    +      PS       P   P P PA + + +
Sbjct: 419 AAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPS-PPPAAAPSAQPAPAPAAAPEPT 477

Query: 621 SAVRSTSSIVPPPPPPPPPPS 641
           +A        P P   P  P+
Sbjct: 478 AAPAPAPPAAPAPAAAPAAPA 498

Length = 824

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 49.5 bits (119), Expect = 7e-06
 Identities = 32/180 (17%), Positives = 41/180 (22%), Gaps = 22/180 (12%)

Query: 592 FSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMP 651
           F P         PP    P   A +    +A  +       PPPP   P           
Sbjct: 359 FHPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQ---------- 408

Query: 652 STSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGP 711
                  P  P P   S        L             P   S   R+  V S   +  
Sbjct: 409 -----QAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAAS---RARPVNSALERLA 460

Query: 712 PPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKI 771
              P P     A  P   +A      +P       +P   P            P    K+
Sbjct: 461 SVRPAPSALEKA--PAKKEAYRWKATNPVEV--KKEPVATPKALKKALEHEKTPELAAKL 516

Length = 647

>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1)

 Score = 49.8 bits (118), Expect = 7e-06
 Identities = 57/304 (18%), Positives = 86/304 (28%), Gaps = 33/304 (10%)

Query: 502 PSPSSPQSIAPTPPL-PPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPP 560
           P+ +SP     TP    P +   S +     P             PP  +++  +  SP 
Sbjct: 497 PNATSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGTTSVPNATSPQ 556

Query: 561 PPP-PPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKD 619
                P+ ++      S P                 P+    G P      P        
Sbjct: 557 VTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSSHSTP-------- 608

Query: 620 SSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPS 679
               RS S+   P      P         T    S+       P P P  + + S    S
Sbjct: 609 ----RSNSTSTTPLLTSAHPTGGENITEETPSVPSTTHVSTLSPGPGPGTTSQVSGPGNS 664

Query: 680 TSSI---------GSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSK 730
           ++S          G P P    P + SG+ + VP+ TS              +    +S 
Sbjct: 665 STSRYPGEVHVTEGMPNPNATSPSAPSGQKTAVPTVTS--------TGGKANSTTKETSG 716

Query: 731 ALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPP 790
           + L A   P     + + +  P       PP        + T       T Q  VP PP 
Sbjct: 717 STLMASTSPHTNEGAFRTT--PYNATTYLPPSTSSKLRPRWTFTSPPVTTKQATVPVPPT 774

Query: 791 PLPK 794
             P 
Sbjct: 775 QHPD 778

This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830

>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1)

 Score = 49.8 bits (118), Expect = 7e-06
 Identities = 60/296 (20%), Positives = 97/296 (32%), Gaps = 11/296 (3%)

Query: 410 TSPVDSEEENNASS--AGDSLDEAFDVFPEPLVDTKKLLLSNAGDSVTSLSKNEGPHDVI 467
           TSP  +    NA+S     + D      P P+V       ++     TS+     P   +
Sbjct: 500 TSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGTTSVPNATSPQ--V 557

Query: 468 LVSEPIDQVSNETVLSSLHQQSLVLTEGNPPCFPPSPSSPQSIAPTPPLPPHSSPASASG 527
               P++  +   V S+      VLT         + SSP S  P  P   HS+P S S 
Sbjct: 558 TEESPVNNTNTPVVTSA----PSVLTSAVTTGQHGTGSSPTSQQPGIPSSSHSTPRSNST 613

Query: 528 VIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCF 587
                +++  P+         PS  + + +S   P P   +++  +          P   
Sbjct: 614 STTPLLTSAHPTGGENITEETPSVPSTTHVSTLSPGPGPGTTSQVSGPGNSSTSRYPGEV 673

Query: 588 SSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGS 647
              +  P P+ TS   P       P   S    +   +  +          P +  G   
Sbjct: 674 HVTEGMPNPNATSPSAPSGQKTAVPTVTSTGGKANSTTKETSGSTLMASTSPHTNEG-AF 732

Query: 648 STMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIV 703
            T P  ++     PP            +S P T+   + P PP   P  S  S +V
Sbjct: 733 RTTPYNAT--TYLPPSTSSKLRPRWTFTSPPVTTKQATVPVPPTQHPDHSNLSMLV 786

This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.8 bits (119), Expect = 7e-06
 Identities = 34/157 (21%), Positives = 43/157 (27%), Gaps = 50/157 (31%)

Query: 519 HSSPASASGVIPLPMS------APPPSPPPPPP-PPLPSSTNNSFLSPPPPPPPLPSSTN 571
                ++ G +PL ++       P P+P P  P    PS         P  P P PS+  
Sbjct: 339 FQLRTTSYGQLPLELAVIEALLVPVPAPQPAKPTAAAPS---------PVRPTPAPSTRP 389

Query: 572 NNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVP 631
               +   PP  P                R    PPP PP P                 P
Sbjct: 390 KAAAAANIPPKEP---------------VRETATPPPVPPRPVAP--------------P 420

Query: 632 PPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPS 668
            P  P   P       +         P   PP PP  
Sbjct: 421 VPHTPESAPK-----LTRAAIPVDEKPKYTPPAPPKE 452

Length = 585

>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional

 Score = 49.8 bits (119), Expect = 7e-06
 Identities = 35/220 (15%), Positives = 47/220 (21%), Gaps = 28/220 (12%)

Query: 571 NNNFISPPPPPPPPPCFSSKDFS------PMPSETSRGPPPPPPPPP----PPAFSGKDS 620
           + NF +       P   +S+  S        P ET  G             PP    +  
Sbjct: 26  DENFDAERDDFLTPLGSTSEATSEDDDDLYPPRETGSGGGVATSTIYTVPRPPRGPEQTL 85

Query: 621 SA-VRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPS 679
                  +S   PP P P PP  +   SS      S  P        P        S  S
Sbjct: 86  DKPDSLPASRELPPGPTPVPPGGFRGASSPRLGADSTSPRFLYQVNFPVILAPIGESNSS 145

Query: 680 TSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHP 739
           +  +        PPPS S +                            + KA        
Sbjct: 146 SEELSEEEEHSRPPPSESLKVK--NGGKVYPKGFSKHKTHKRSEFSGLTKKAARKRKGSF 203

Query: 740 ---------------SPTSRSSQPSFHPPPPPPPPPPPPP 764
                          +           P     P P    
Sbjct: 204 VFKPSQLKELSGSLKNLLHLDDSAETDPATRQVPVPVHVL 243

Length = 580

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 49.8 bits (119), Expect = 7e-06
 Identities = 28/132 (21%), Positives = 33/132 (25%), Gaps = 31/132 (23%)

Query: 605 PPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGP------ 658
           PP      P                   P  P P P      ++     +   P      
Sbjct: 636 PPVFKTALPRPDYNRGGEA-------GGPGVPGPVPVGMPAHTARPSRVARGDPVRPTAH 688

Query: 659 ----PPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPP 714
                 P  P P    G G          G  PPPP  P +        P  +S    P 
Sbjct: 689 HAALRAPQAPRPGGPPGGG----------GGLPPPPDLPAAAGP----APCGSSLIASPT 734

Query: 715 PPPPPPPPAAGP 726
            PP P PP A  
Sbjct: 735 APPEPEPPGAEQ 746

Length = 753

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 49.3 bits (118), Expect = 7e-06
 Identities = 23/133 (17%), Positives = 30/133 (22%), Gaps = 15/133 (11%)

Query: 657 GPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPP 716
                P       + + S          S  P  P                      PP 
Sbjct: 70  RVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPE-------------AQVPPQ 116

Query: 717 PPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQ 776
             P P    P   +     P    P  +   P   P P P    P P   +      +  
Sbjct: 117 HAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPA--EPV 174

Query: 777 LAPTSQPAVPPPP 789
            AP  +P   P P
Sbjct: 175 AAPQPEPVAEPAP 187

Length = 333

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.6 bits (119), Expect = 8e-06
 Identities = 28/86 (32%), Positives = 35/86 (40%), Gaps = 7/86 (8%)

Query: 524 SASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPP 583
           SAS     P       PPP P PPLP  T  +    PPPPPP  +  ++N  +  P    
Sbjct: 516 SASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSS 575

Query: 584 PPCFSSKDFSPMPSETSRGPPPPPPP 609
           PP        P+P E +  P     P
Sbjct: 576 PP-------PPIPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.6 bits (118), Expect = 8e-06
 Identities = 26/121 (21%), Positives = 36/121 (29%), Gaps = 17/121 (14%)

Query: 791 PLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPS 850
           P P         AP P           P+P   P P  P   GA  P   P+P     P 
Sbjct: 382 PSPAGSPDVKKKAPEPDL---------PQPDRHPGPAKPEAPGA-RPAELPSPASAPTPE 431

Query: 851 PPSRGVMPSPPPPPGVKSSSVPPPPLPSVGKGKVTSGPASHGRGRLNSGVSHAPKKASLK 910
                  P     P   S     P   + GK  V  G     +G+  +   +  +K  ++
Sbjct: 432 ----QQPPVARSAPLPPSPQASAPRNVASGKPGVDLGS---WQGKFMNFTRNGSRKQPVQ 484

Query: 911 P 911
            
Sbjct: 485 A 485

Length = 620

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.4 bits (118), Expect = 8e-06
 Identities = 24/101 (23%), Positives = 31/101 (30%), Gaps = 6/101 (5%)

Query: 688 PPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQ 747
           P   P PS +  +S  PS +S    P  P     PA    +   +   PP   P +  S 
Sbjct: 386 PAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAG---TPPTVSVDPPAAVPVNPPST 442

Query: 748 PSFHPPPPPPPPPPPPPP---SSLGKITNKLQLAPTSQPAV 785
                 P         P    SSLG  T +       Q   
Sbjct: 443 APQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQEKAEQATG 483

Length = 614

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 49.4 bits (118), Expect = 9e-06
 Identities = 30/156 (19%), Positives = 39/156 (25%), Gaps = 35/156 (22%)

Query: 617 GKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSS 676
           G+ +      S   P      P P +   G             P  P P P      ++ 
Sbjct: 623 GRATVGEMIISGFPPVFKTALPRPDYNRGGE---------AGGPGVPGPVPVGMPAHTAR 673

Query: 677 LPSTSSIGSPPP-------PPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSS 729
               +      P         P  P         P     G    PPPP  P A      
Sbjct: 674 PSRVARGDPVRPTAHHAALRAPQAPR--------PGGPPGGGGGLPPPPDLPAA------ 719

Query: 730 KALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPP 765
                A P P  +S  + P+  P P PP        
Sbjct: 720 -----AGPAPCGSSLIASPTAPPEPEPPGAEQADGA 750

Length = 753

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.4 bits (118), Expect = 9e-06
 Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 4/94 (4%)

Query: 657 GPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPP----PPPPPSFSGRSSIVPSTTSKGPP 712
           G   P     P F+   ++  PS ++  SP P        P +    +    +  +    
Sbjct: 371 GGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVD 430

Query: 713 PPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSS 746
           PP   P  PP+  P + +          P S+ S
Sbjct: 431 PPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVS 464

Length = 614

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 49.2 bits (117), Expect = 1e-05
 Identities = 49/231 (21%), Positives = 66/231 (28%), Gaps = 22/231 (9%)

Query: 501 PPSPSSPQSIAPTPPL-PPHSSPASASGVIPLPMSAPPPSPPPPP--------------- 544
              P  P++ AP     PP     +A    PL + APP  PPP P               
Sbjct: 276 TGPPPPPEAAAPNGAAAPPDGVWGAALAGAPLALPAPPDPPPPAPAGDAEEEDDEDGAME 335

Query: 545 ---PPPLPSSTNNSFLSPPPPPPPLPSSTNNNFIS--PPPPPPPPPCFSSKDFSPMPSET 599
              P P P             P   P S+  +  +    P     P    +      +  
Sbjct: 336 VVSPLPRPRQHYPLGFPKRRRPTWTPPSSLEDLSAGRHHPKRASLPTRKRRSARHAATPF 395

Query: 600 SRGPP-PPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGP 658
           +RGP       P  P  +   + A     +  PPPP  P P +  G      P      P
Sbjct: 396 ARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPP 455

Query: 659 PPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSK 709
            P   P P         +L +      P PP        GR      T  +
Sbjct: 456 APATEPAPDDPDDATRKALDALRERRPPEPPGADLAELLGRHPDTAGTVVR 506

Length = 3151

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.9 bits (117), Expect = 1e-05
 Identities = 27/131 (20%), Positives = 33/131 (25%), Gaps = 24/131 (18%)

Query: 778 APTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAP---RPPPPPPPLGPARSGA 834
           A    PA P    P           AP    +    P  AP      P  PP       A
Sbjct: 376 AEKKTPARPEAAAPAA---------APVAQAAAAPAPAAAPAAAASAPAAPP-------A 419

Query: 835 VLPPPPPAPKLPTAP-SPPSRGVMPSPPPPPGVKSSSVPPPPLPSVGKGKVTSGPASHGR 893
             PP P A     AP + P+         P    +      P       +V   PA    
Sbjct: 420 AAPPAPVAAPAAAAPAAAPAAAPAAVALAP----APPAQAAPETVAIPVRVAPEPAVASA 475

Query: 894 GRLNSGVSHAP 904
               +    A 
Sbjct: 476 APAPAAAPAAA 486

Length = 618

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.7 bits (117), Expect = 1e-05
 Identities = 24/135 (17%), Positives = 35/135 (25%), Gaps = 24/135 (17%)

Query: 533 MSAPPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDF 592
              P P  PP    P  S+   +  +    PP  P+        PPPP   P        
Sbjct: 363 APLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAV-------PPPPASAPQ------- 408

Query: 593 SPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPS 652
                       P  P P   +        ++            P   S     +S +  
Sbjct: 409 ----------QAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALER 458

Query: 653 TSSIGPPPPPPPPPP 667
            +S+ P P      P
Sbjct: 459 LASVRPAPSALEKAP 473

Length = 647

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 49.1 bits (118), Expect = 1e-05
 Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 5/90 (5%)

Query: 643 YGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSI 702
           YG GS+  P+ ++         P  +      ++    +   +PP    P       ++ 
Sbjct: 36  YGPGSTAAPTAAAAAAAAAASAPAAA-----PAAKAPAAPAPAPPAAAAPAAPPKPAAAA 90

Query: 703 VPSTTSKGPPPPPPPPPPPPAAGPNSSKAL 732
             +     PP       P  AA  +    L
Sbjct: 91  AAAAAPAAPPAAAAAAAPAAAAVEDEVTPL 120

Length = 1228

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 49.0 bits (117), Expect = 1e-05
 Identities = 29/127 (22%), Positives = 35/127 (27%), Gaps = 19/127 (14%)

Query: 755 PPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKP 814
           PP      P P                +   P  P P+P         A P   + G  P
Sbjct: 636 PPVFKTALPRPD----------YNRGGEAGGPGVPGPVPVGMPAH--TARPSRVARG-DP 682

Query: 815 IN------APRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPPPGVKS 868
           +       A R P  P P GP   G  LPPPP  P         S  +     PP     
Sbjct: 683 VRPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEPP 742

Query: 869 SSVPPPP 875
            +     
Sbjct: 743 GAEQADG 749

Length = 753

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.1 bits (115), Expect = 2e-05
 Identities = 28/142 (19%), Positives = 34/142 (23%), Gaps = 17/142 (11%)

Query: 501 PPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPP 560
                           P    PA A      P  A P  P P P    P+   +   + P
Sbjct: 662 ASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQP 721

Query: 561 PPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDS 620
           P      S+ +     P P PP P        +P        P P   P   P       
Sbjct: 722 PQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAP------- 774

Query: 621 SAVRSTSSIVPPPPPPPPPPSF 642
                     PP PP       
Sbjct: 775 ----------PPSPPSEEEEMA 786

Length = 824

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.4 bits (116), Expect = 2e-05
 Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 5/87 (5%)

Query: 644 GKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIV 703
             GS++  +      PPPP   PP  +       P+ ++   P PPPPPP +    S+  
Sbjct: 513 QSGSASNTAK----TPPPPQKSPPPPAPTPPLPQPTATA-PPPTPPPPPPTATQASSNAP 567

Query: 704 PSTTSKGPPPPPPPPPPPPAAGPNSSK 730
               +   PPPP P  P P+   +SS 
Sbjct: 568 AQIPADSSPPPPIPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 48.7 bits (117), Expect = 2e-05
 Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 9/92 (9%)

Query: 657 GPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPP 716
           GP     P   + +   ++S P+ +     P  P P P  +   +  P   +       P
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP 96

Query: 717 PPPPPPAAGPNSSKALLSAPPHPSPTSRSSQP 748
             PP  AA         +A P  +       P
Sbjct: 97  AAPPAAAA---------AAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 48.3 bits (116), Expect = 2e-05
 Identities = 21/96 (21%), Positives = 28/96 (29%), Gaps = 14/96 (14%)

Query: 754 PPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCK 813
           P     P     ++          AP + PA   P  P P   + + P APP P      
Sbjct: 38  PGSTAAPTAAAAAAAAA-----ASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKP------ 86

Query: 814 PINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAP 849
              A        P  P  + A   P   A +    P
Sbjct: 87  ---AAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 48.3 bits (116), Expect = 2e-05
 Identities = 22/110 (20%), Positives = 29/110 (26%), Gaps = 25/110 (22%)

Query: 749 SFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPP 808
            + P     P       ++          AP + PA   P  P P   + + P APP P 
Sbjct: 35  DYGPGSTAAPTAAAAAAAAAAS-------APAAAPAAKAPAAPAPAPPAAAAPAAPPKP- 86

Query: 809 SIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMP 858
                   A        P           PP  A     A +     V P
Sbjct: 87  --------AAAAAAAAAPA---------APPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 48.3 bits (116), Expect = 2e-05
 Identities = 14/105 (13%), Positives = 24/105 (22%), Gaps = 27/105 (25%)

Query: 536 PPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPM 595
           P  +  P       ++  ++  + P    P   +       P PP    P       +  
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPA-------PAPPAAAAP-------AAP 83

Query: 596 PSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPP 640
           P   +       P  PP A +                P       
Sbjct: 84  PKPAAAAAAAAAPAAPPAAAA-------------AAAPAAAAVED 115

Length = 1228

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 47.7 bits (114), Expect = 2e-05
 Identities = 25/131 (19%), Positives = 30/131 (22%), Gaps = 7/131 (5%)

Query: 724 AGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQP 783
                + A       PSP  +   P     P  P   PP             Q AP    
Sbjct: 71  VNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQ 130

Query: 784 AVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAP 843
                P P         P+  P  P +   P      P P             P P P  
Sbjct: 131 QPAYQPQPEQ-------PLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVA 183

Query: 844 KLPTAPSPPSR 854
           +       P R
Sbjct: 184 EPAPVMDKPKR 194

Length = 333

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 48.5 bits (115), Expect = 2e-05
 Identities = 46/268 (17%), Positives = 69/268 (25%), Gaps = 12/268 (4%)

Query: 498 PCFPPSPSSPQSIAPTPPLPPHSSPASASGV-IPLPMSAPPP-SPPPPPPPPLPSSTNNS 555
           P  P + + P +    PP  P  +     G     P+ AP P   P       P+   N 
Sbjct: 336 PVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNE 395

Query: 556 FLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAF 615
            L  P  P     +      +  P   P P   ++     P+                + 
Sbjct: 396 PLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQST 455

Query: 616 SGKDSSAVRSTSSIVPPPPPP---PPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGK 672
               S+     +   P    P    P P          P      P  PP         K
Sbjct: 456 FAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPLYYFEEVEEK 515

Query: 673 GSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKAL 732
            +      ++   P P P   P        + S+         PP     A  P +S  +
Sbjct: 516 RAREREQLAAWYQPIPEPVKEP------EPIKSSLKAPSVAAVPPVEAAAAVSPLAS-GV 568

Query: 733 LSAPPHPSPTSRSSQPSFHPPPPPPPPP 760
             A       +  + P F       P P
Sbjct: 569 KKATLATGAAATVAAPVFSLANSGGPRP 596

Length = 1355

>gnl|CDD|218881 pfam06070, Herpes_UL32, Herpesvirus large structural phosphoprotein UL32

 Score = 48.4 bits (115), Expect = 2e-05
 Identities = 64/453 (14%), Positives = 108/453 (23%), Gaps = 42/453 (9%)

Query: 414 DSEEENNASSAGDSLDEAFDVFPEPLVDTKKLLLSNAGDSVTSLSKNEGPHDVILVSEPI 473
           D EE  +    G        +  +   +   + L   G S   L   + P     + EP 
Sbjct: 314 DDEESGDEDGDGSGFAPEPLIKTDSRSNDTLVDLGRGGGS-LKLDSVDAPGTSSYLFEPG 372

Query: 474 DQVSNETVLSSLHQQSLVLTEGNPPCFPP---SPSSPQSIAPTPPLPPHSSPASASGVIP 530
              S  +        +    +            P   +  A         +    +  + 
Sbjct: 373 LSPSPNSGKEMPGILTTENLDLPLASTDSTEMDPEDKRGGAVKINNSGILAWGLKTPGLA 432

Query: 531 LPMSAPPPSPPP------PPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPP 584
           +                  PP PL   +++  +    PP     S   + +     P   
Sbjct: 433 VNDERSIAVSSDGITDVLDPPSPLRLHSSDKVIDSVSPPSKRRVSAPASRLDDAKRPEVT 492

Query: 585 PCFSSKDFSPMPSETS-RGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPP-PSF 642
              ++ + S   SE    G             S K+        +  PPP  PP    + 
Sbjct: 493 ---ATPESSGSDSEGGASGREDETSSDAESVVSIKELRPRIGFINKSPPPKSPPKSRRTL 549

Query: 643 YGKGSSTMPSTSSIGPPPP---PPPPPPSFSGKGSSSLPSTSSIGSPPPPPP--PPPSFS 697
               S   PST+    P P               ++   + +  G         P  S S
Sbjct: 550 IVALSLASPSTAGSPRPKPSLGKFVIGTDPFAFANTVRLTDNMRGGNGVGSSVKPKGSAS 609

Query: 698 GRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPS------PTSRSSQPSFH 751
            +    P +  K P       P     G   +    S    PS            + +  
Sbjct: 610 SKPLTGPGSDLK-PATLNGKTPSSSLVGAARNAGASSKVKIPSGLGGFTSPISLLESALE 668

Query: 752 PPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIG 811
                    P          TN  +    ++ A       + ++ +      P       
Sbjct: 669 DVLTSATSTPVKKNDPYLWDTNGEKAGGGTESA---STTDVFQNFAGLNKKTP------- 718

Query: 812 CKPINAPRPPPPPPPLGPARSGAVLPPPPPAPK 844
                   P  P PPL  A   A  P       
Sbjct: 719 -----VGGPFQPKPPLSRALDSASSPGGSGGKP 746

The large phosphorylated protein (UL32-like) of herpes viruses is the polypeptide most frequently reactive in immuno-blotting analyses with antisera when compared with other viral proteins. Length = 777

>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1)

 Score = 47.5 bits (112), Expect = 3e-05
 Identities = 48/284 (16%), Positives = 77/284 (27%), Gaps = 11/284 (3%)

Query: 620 SSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPS----TSSIGPPPPPPPPPPSFSGKGSS 675
           + ++   S+        P   +  G  SST+P     TS      P    P       ++
Sbjct: 452 TPSLPPASTGPTVSTADPTSGTPTGTTSSTLPEDTSPTSRTTSATPNATSPTPAVTTPNA 511

Query: 676 SLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSA 735
           + P+T      P    P P   G ++   S  +     P    P      P ++      
Sbjct: 512 TSPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGTTSVPNATSPQVTEESPVNNTNTPVV 571

Query: 736 PPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKS 795
              PS  + +     H     P    P  PSS            ++  +  P       +
Sbjct: 572 TSAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSSHSTPR------SNSTSTTPLLTSAHPT 625

Query: 796 CSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRG 855
              +I    P  PS       +P P P           +     P    + T   P    
Sbjct: 626 GGENITEETPSVPSTTHVSTLSPGPGPGTTSQVSGPGNSSTSRYPGEVHV-TEGMPNPNA 684

Query: 856 VMPSPPPPPGVKSSSVPPPPLPSVGKGKVTSGPASHGRGRLNSG 899
             PS P        +V      +    K TSG         ++ 
Sbjct: 685 TSPSAPSGQKTAVPTVTSTGGKANSTTKETSGSTLMASTSPHTN 728

This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830

>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional

 Score = 47.8 bits (114), Expect = 3e-05
 Identities = 44/255 (17%), Positives = 58/255 (22%), Gaps = 23/255 (9%)

Query: 580 PPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPP 639
           P   P    + D S    E SR               G  S A       + PP      
Sbjct: 5   PRGQPGR-WNYDSSDESPEGSRDENFDAERDDFLTPLGSTSEATSEDDDDLYPPRETGSG 63

Query: 640 PSFYGKGSSTMP----------------STSSIGPPPPPPPPPPSFSGKGSSSLPSTSSI 683
                    T+P                  S   PP P P PP  F G  S  L + S+ 
Sbjct: 64  GGVATSTIYTVPRPPRGPEQTLDKPDSLPASRELPPGPTPVPPGGFRGASSPRLGADSTS 123

Query: 684 GSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPA-----AGPNSSKALLSAPPH 738
                    P   +       S+           PPP  +      G    K       H
Sbjct: 124 PRFLYQVNFPVILAPIGESNSSSEELSEEEEHSRPPPSESLKVKNGGKVYPKGFSKHKTH 183

Query: 739 PSPTSRSSQPSFHPPPPPPPPPPPPPPSSL-GKITNKLQLAPTSQPAVPPPPPPLPKSCS 797
                                  P     L G + N L L  +++        P+P    
Sbjct: 184 KRSEFSGLTKKAARKRKGSFVFKPSQLKELSGSLKNLLHLDDSAETDPATRQVPVPVHVL 243

Query: 798 TSIPMAPPPPPSIGC 812
               +    P    C
Sbjct: 244 YPPLLTEYVPYKPAC 258

Length = 580

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 48.3 bits (116), Expect = 3e-05
 Identities = 19/102 (18%), Positives = 28/102 (27%), Gaps = 20/102 (19%)

Query: 707 TSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPS 766
              GP     P     AA   +S       P  +P +++       PP    P  PP   
Sbjct: 34  ADYGPGSTAAPTAAAAAAAAAAS------APAAAPAAKAPAAPAPAPPAAAAPAAPP--- 84

Query: 767 SLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPP 808
                       P +  A    P   P + + + P A     
Sbjct: 85  -----------KPAAAAAAAAAPAAPPAAAAAAAPAAAAVED 115

Length = 1228

>gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau; Validated

 Score = 47.8 bits (113), Expect = 3e-05
 Identities = 37/207 (17%), Positives = 60/207 (28%), Gaps = 21/207 (10%)

Query: 503 SPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSP--- 559
           SPS+  +   T    P   P + +   P+  ++    P         S+  N+ + P   
Sbjct: 379 SPSAQTAEKETAAKKPQPRPEAETAQTPVQTASAAAMPSEGKTAGPVSNQENNDVPPWED 438

Query: 560 -------PPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPP 612
                          + +         PP       ++      ++     P    P   
Sbjct: 439 APDEAQTAAGTAQTSAKSIQTASEAETPPE------NQVSKNKAADNETDAPLSEVPSEN 492

Query: 613 PAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPP--PPPPPSFS 670
           P  +  +  AV + +     P  P      YG   +  P       PPP      P   +
Sbjct: 493 PIQATPNDEAVETETFAHEAPAEPFY---GYGFPDNDCPPEDGAEIPPPDWEHAAPADTA 549

Query: 671 GKGSSSLPSTSSIGSPPPPPPPPPSFS 697
           G G+        IG    P  PPP FS
Sbjct: 550 GGGADEEAEAGGIGGNNTPSAPPPEFS 576

Length = 709

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.8 bits (114), Expect = 3e-05
 Identities = 24/122 (19%), Positives = 33/122 (27%), Gaps = 17/122 (13%)

Query: 562 PPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSS 621
                P        + P   P P   ++   SP PS++S    P  P             
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAPQPS--AAAAASPSPSQSSAAAQPSAPQSATQP------- 420

Query: 622 AVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTS 681
           A    +  V PP   P  P       ST P   ++ P           S   S    +  
Sbjct: 421 AGTPPTVSVDPPAAVPVNPP------STAPQ--AVRPAQFKEEKKIPVSKVSSLGPSTLR 472

Query: 682 SI 683
            I
Sbjct: 473 PI 474

Length = 614

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.5 bits (113), Expect = 3e-05
 Identities = 20/94 (21%), Positives = 29/94 (30%), Gaps = 3/94 (3%)

Query: 644 GKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFS--GRSS 701
           G  S  + + +   P P       +   K   SL S  +  +      P P F    R  
Sbjct: 344 GAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPT-AAATAAGAPLPDFDPRPRGP 402

Query: 702 IVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSA 735
             P        PP   P   PA      + +L+A
Sbjct: 403 PAPEPARSAEAPPLVAPAAAPAGLALRWRDVLAA 436

Length = 504

>gnl|CDD|114709 pfam06003, SMN, Survival motor neuron protein (SMN)

 Score = 46.5 bits (110), Expect = 3e-05
 Identities = 26/75 (34%), Positives = 27/75 (36%), Gaps = 7/75 (9%)

Query: 734 SAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLP 793
           S        S        P  P  PP PPPPP   G+   K    P      PPP P  P
Sbjct: 149 SHSHEVRSKSNFPMGPPSPWNPRFPPGPPPPPPGFGRHGEKPSGWPPFLSGWPPPFPLGP 208

Query: 794 KSCSTSIPMAPPPPP 808
                  PM PPPPP
Sbjct: 209 -------PMIPPPPP 216

This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs. Length = 264

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 47.2 bits (112), Expect = 3e-05
 Identities = 31/89 (34%), Positives = 34/89 (38%), Gaps = 7/89 (7%)

Query: 684 GSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTS 743
             PPPP   P    G SS+ PS +S      P     P   GP  S A  SAPP   P  
Sbjct: 186 IQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGP--SPAQPSAPPASIP-- 241

Query: 744 RSSQPSFHPPPPPPPPPPPPPPSSLGKIT 772
               P   P      PPP PPP  +  I 
Sbjct: 242 ---APPIPPVIQYVAPPPVPPPQPIIPIQ 267

Length = 582

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 47.5 bits (113), Expect = 4e-05
 Identities = 37/190 (19%), Positives = 49/190 (25%), Gaps = 19/190 (10%)

Query: 579 PPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPP 638
             P  P   +            R P       P    + + +S  +S S           
Sbjct: 775 LEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESSG 834

Query: 639 PPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSG 698
           P    G  +   P+ SS      P        GK     P      + P    PP + + 
Sbjct: 835 PARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAA 894

Query: 699 RSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPP 758
                      G P P P P P    GP         P  P P        F   PP   
Sbjct: 895 A-------PPAGAPAPRPRPAPRVKLGP-------MPPGGPDPRG-----GFRRVPPGDL 935

Query: 759 PPPPPPPSSL 768
             P P  ++L
Sbjct: 936 HTPAPSAAAL 945

Length = 1352

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 47.5 bits (113), Expect = 4e-05
 Identities = 26/140 (18%), Positives = 35/140 (25%), Gaps = 2/140 (1%)

Query: 632 PPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGS--SSLPSTSSIGSPPPP 689
             P  P   +          +    G      P   + S   S   S   T   GS    
Sbjct: 775 LEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESSG 834

Query: 690 PPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPS 749
           P  PP  + R     S+ S    P           G    +         +     +  +
Sbjct: 835 PARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAA 894

Query: 750 FHPPPPPPPPPPPPPPSSLG 769
             P   P P P P P   LG
Sbjct: 895 APPAGAPAPRPRPAPRVKLG 914

Length = 1352

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.4 bits (113), Expect = 4e-05
 Identities = 18/80 (22%), Positives = 24/80 (30%), Gaps = 2/80 (2%)

Query: 813 KPINAPRPPPPPPPLGPARSGAVLPP--PPPAPKLPTAPSPPSRGVMPSPPPPPGVKSSS 870
           KP  A     P     PAR  A  P   P        AP+        +P  PP     +
Sbjct: 365 KPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPA 424

Query: 871 VPPPPLPSVGKGKVTSGPAS 890
               P  +       + PA+
Sbjct: 425 PVAAPAAAAPAAAPAAAPAA 444

Length = 618

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 47.2 bits (113), Expect = 4e-05
 Identities = 29/201 (14%), Positives = 45/201 (22%), Gaps = 41/201 (20%)

Query: 549 PSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPP 608
           P++       PP    P  S+      +    PP  P                 PP   P
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAP-------------AVPPPPASAP 407

Query: 609 PPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPS 668
                                  P  P P   S        +             P   S
Sbjct: 408 Q--------------------QAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAAS 447

Query: 669 FSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNS 728
            +   +S+L   +S+   P      P              +     P      P A P +
Sbjct: 448 RARPVNSALERLASVRPAPSALEKAP--------AKKEAYRWKATNPVEVKKEPVATPKA 499

Query: 729 SKALLSAPPHPSPTSRSSQPS 749
            K  L     P   ++ +  +
Sbjct: 500 LKKALEHEKTPELAAKLAAEA 520

Length = 647

>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1)

 Score = 47.5 bits (112), Expect = 4e-05
 Identities = 42/251 (16%), Positives = 67/251 (26%), Gaps = 9/251 (3%)

Query: 495 GNPPCFPPSPSSPQSI-APTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTN 553
           G        P+   S+   T P     SP + +    +  +    +           S+ 
Sbjct: 534 GVTTTATSPPTGTTSVPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSP 593

Query: 554 NSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPP 613
            S   P  P     +  +N+  + P      P          PS  S        P P P
Sbjct: 594 TSQQ-PGIPSSSHSTPRSNSTSTTPLLTSAHPTGGENITEETPSVPSTTHVSTLSPGPGP 652

Query: 614 AFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKG 673
             + + S    S++S         P      +G     +TS   P       P   S  G
Sbjct: 653 GTTSQVSGPGNSSTS-------RYPGEVHVTEGMPNPNATSPSAPSGQKTAVPTVTSTGG 705

Query: 674 SSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALL 733
            ++  +  + GS       P +  G     P   +   PP       P     +      
Sbjct: 706 KANSTTKETSGSTLMASTSPHTNEGAFRTTPYNATTYLPPSTSSKLRPRWTFTSPPVTTK 765

Query: 734 SAPPHPSPTSR 744
            A     PT  
Sbjct: 766 QATVPVPPTQH 776

This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.1 bits (112), Expect = 4e-05
 Identities = 31/116 (26%), Positives = 44/116 (37%), Gaps = 4/116 (3%)

Query: 766 SSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPP 825
           +S G++  +L +       VP P P  P + + S P+ P P PS       A    PP  
Sbjct: 344 TSYGQLPLELAVIEALLVPVPAPQPAKPTAAAPS-PVRPTPAPS-TRPKAAAAANIPPKE 401

Query: 826 PLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPPPGVKSSSVPPPPLPSVGK 881
           P+    +   +PP P AP +P  P    +        P   K    PP P     K
Sbjct: 402 PVRETATPPPVPPRPVAPPVPHTPESAPKL--TRAAIPVDEKPKYTPPAPPKEEEK 455

Length = 585

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.3 bits (113), Expect = 4e-05
 Identities = 19/87 (21%), Positives = 27/87 (31%), Gaps = 6/87 (6%)

Query: 527 GVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPC 586
           G++P    +   +   P  P    + +       P  P    +      SPPP    PP 
Sbjct: 358 GLLPSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATT--PSPPPAKASPP- 414

Query: 587 FSSKDFSPMPSETSRGPPPPPPPPPPP 613
                    P+E S  PP      PP 
Sbjct: 415 ---IPVPAEPTEPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 46.4 bits (110), Expect = 4e-05
 Identities = 36/125 (28%), Positives = 46/125 (36%), Gaps = 43/125 (34%)

Query: 649 TMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTS 708
            +P+T++  P PPPPPP                   +   P P  P              
Sbjct: 32  ALPATANADPAPPPPPPST-----------------AAAAPAPAAP-------------- 60

Query: 709 KGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSL 768
             PPPPPP  PP P              P+ +P    + P+  PPPP  P  PPPP    
Sbjct: 61  --PPPPPPAAPPAPQPD----------DPNAAPPPPPADPNAPPPPPVDPNAPPPPAPEP 108

Query: 769 GKITN 773
           G+I N
Sbjct: 109 GRIDN 113

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 46.7 bits (111), Expect = 5e-05
 Identities = 45/215 (20%), Positives = 56/215 (26%), Gaps = 61/215 (28%)

Query: 703 VPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPP 762
           +    S G P PPPP                S P  P P  R  +    P     PP  P
Sbjct: 86  ITVDPSAGEPAPPPPHAR-----------RTSEPELPRPGRRPYEGYGGPRADDRPPGLP 134

Query: 763 PPPSSLGKITNKLQLAPTSQPAVP-----PPPPPLPKSCSTSIPMAPP--PPPSIGCKPI 815
                           PT++PA P     P P   P++             PP       
Sbjct: 135 RQDQ-----------LPTARPAYPAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASP 183

Query: 816 NAPRPPP----PPPPLG--------------------PARSGAVLPPPPPA--------P 843
            +  P       P   G                    P R     P PPP         P
Sbjct: 184 ASYAPEQERDREPYDAGRPEYDQRRRDYDHPRPDWDRPRRDRTDRPEPPPGAGHVHRGGP 243

Query: 844 KLPTAPSPPSRGVMPSPPPPPGVKSSSVPPPPLPS 878
             P     P   + PS P P   + +  P P  P+
Sbjct: 244 GPPERDDAPVVPIRPSAPGPLAAQPAPAPGPGEPT 278

Length = 617

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 47.2 bits (112), Expect = 5e-05
 Identities = 31/115 (26%), Positives = 40/115 (34%), Gaps = 17/115 (14%)

Query: 712 PPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKI 771
           P    PPPP    G     + L+     +P +R  + SF+P  P P P  P  P +    
Sbjct: 183 PGAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPAS--- 239

Query: 772 TNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPP 826
                 AP   P +    PP            PPP P I  + I A     P  P
Sbjct: 240 ----IPAPPIPPVIQYVAPPPV----------PPPQPIIPIQHIRAVTGETPANP 280

Length = 582

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.9 bits (112), Expect = 6e-05
 Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 568 SSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTS 627
           S + +N    PPPP   P        P+P  T+  PPP PPPPPP A     ++  +  +
Sbjct: 514 SGSASNTAKTPPPPQKSPP-PPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPA 572

Query: 628 SIVPPPPPPPPP 639
              PPPP P  P
Sbjct: 573 DSSPPPPIPEEP 584

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.9 bits (112), Expect = 6e-05
 Identities = 22/81 (27%), Positives = 32/81 (39%)

Query: 503 SPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPPPP 562
           S S+  +    PP      P + +  +P P +  PP  PPPPPP    +++N+    P  
Sbjct: 514 SGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPAD 573

Query: 563 PPPLPSSTNNNFISPPPPPPP 583
             P P        SP     P
Sbjct: 574 SSPPPPIPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 47.2 bits (113), Expect = 6e-05
 Identities = 22/120 (18%), Positives = 33/120 (27%), Gaps = 35/120 (29%)

Query: 505 SSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPPPPPP 564
               + APT      ++ ASA      P +  P +P P PP               P  P
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPA--AAPAAKAPAAPAPAPPAA-----------AAPAAP 83

Query: 565 PLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVR 624
           P P++      +     P  P                 P       P  A    + + +R
Sbjct: 84  PKPAAA-----AAAAAAPAAP-----------------PAAAAAAAPAAAAVEDEVTPLR 121

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 46.8 bits (112), Expect = 6e-05
 Identities = 17/89 (19%), Positives = 26/89 (29%), Gaps = 2/89 (2%)

Query: 801 PMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSP 860
           P +   P +       A   P   P      + A  P PP A      P P +     + 
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPA--PAPPAAAAPAAPPKPAAAAAAAAA 95

Query: 861 PPPPGVKSSSVPPPPLPSVGKGKVTSGPA 889
           P  P   +++  P       +     G A
Sbjct: 96  PAAPPAAAAAAAPAAAAVEDEVTPLRGAA 124

Length = 1228

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 46.2 bits (110), Expect = 6e-05
 Identities = 33/149 (22%), Positives = 44/149 (29%), Gaps = 19/149 (12%)

Query: 688 PPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQ 747
                P +     +  PS   +  PP     P  P   P   +A +     P P   + Q
Sbjct: 70  RVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQP--PEAQVPPQHAPRPAQPAPQ 127

Query: 748 PSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPP 807
           P   P   P P  P   P                 P V P P P+  +   +     P  
Sbjct: 128 PVQQPAYQPQPEQPLQQP---------------VSPQVAPAPQPVHSAPQPAQQAFQPAE 172

Query: 808 PSIGCKPINAPRPPPPPPPLGPARSGAVL 836
           P    +P   P   P P    P R  AV+
Sbjct: 173 PVAAPQP--EPVAEPAPVMDKPKRKEAVI 199

Length = 333

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.1 bits (110), Expect = 8e-05
 Identities = 25/91 (27%), Positives = 32/91 (35%), Gaps = 16/91 (17%)

Query: 551 STNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPP 610
            + +   S     PP P  +       PP P P                    PPP PPP
Sbjct: 511 ESQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTA----------------TAPPPTPPP 554

Query: 611 PPPAFSGKDSSAVRSTSSIVPPPPPPPPPPS 641
           PPP  +   S+A     +   PPPP P  P+
Sbjct: 555 PPPTATQASSNAPAQIPADSSPPPPIPEEPT 585

Length = 620

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.0 bits (109), Expect = 9e-05
 Identities = 18/69 (26%), Positives = 22/69 (31%), Gaps = 1/69 (1%)

Query: 501 PPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPP 560
           P +     + A  PP  P    A+   V P    APP    P   P L  +       P 
Sbjct: 385 PSTRPKAAAAANIPPKEPVRETATPPPVPP-RPVAPPVPHTPESAPKLTRAAIPVDEKPK 443

Query: 561 PPPPPLPSS 569
             PP  P  
Sbjct: 444 YTPPAPPKE 452

Length = 585

>gnl|CDD|177614 PHA03377, PHA03377, EBNA-3C; Provisional

 Score = 46.2 bits (109), Expect = 9e-05
 Identities = 79/372 (21%), Positives = 105/372 (28%), Gaps = 41/372 (11%)

Query: 497 PPCFPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPL----PSST 552
           PP   PS   P   +P    PP + P   +     P    PPS  P          P+S 
Sbjct: 552 PPKVSPSDRGPPKASPPVMAPPSTGPRVMATPSTGPRDMAPPSTGPRQQAKCKDGPPASG 611

Query: 553 NNSFLSPPPPPPPLPSSTNNNFIS----PPPPPPPPPCF----SSKDFSPMPSETS--RG 602
            +    P   P  +  S    F+          P P  F    + +D S +  E S  R 
Sbjct: 612 PHEKQPPSSAPRDMAPSVVRMFLRERLLEQSTGPKPKSFWEMRAGRDGSGIQQEPSSRRQ 671

Query: 603 PPPPPPPPPPP------AFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPST--- 653
           P     PP P            D+   + +         P  P S   +     P     
Sbjct: 672 PATQSTPPRPSWLPSVFVLPSVDAGRAQPSEESHLSSMSPTQPISHEEQPRYEDPDDPLD 731

Query: 654 -SSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPP 712
            S      PPP     +SG            G   P PP  P + G              
Sbjct: 732 LSLHPDQAPPPSHQAPYSGHEEPQAQQAPYPGYWEPRPPQAP-YLGYQEPQAQGVQVSSY 790

Query: 713 PPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKIT 772
           P    P    A  P    +      +P            P  P PP  PP    S G   
Sbjct: 791 PGYAGPWGLRAQHPRYRHSWAYWSQYP-----GHGHPQGPWAPRPPHLPPQWDGSAGHGQ 845

Query: 773 NKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPP-PPPPPLGPAR 831
           +++   P  Q    PP   L     + +P  P          +++  P    P P  P R
Sbjct: 846 DQVSQFPHLQSETGPPRLQL-----SQVPQLPYSQT-----LVSSSAPSWSSPQPRAPIR 895

Query: 832 SGAVLPPPPPAP 843
                 PPPP P
Sbjct: 896 PIPTRFPPPPMP 907

Length = 1000

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.9 bits (109), Expect = 9e-05
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 9/64 (14%)

Query: 704 PSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPP 763
           P + + G P P  P  PPPAA P         PP       +++P+  P P PP    PP
Sbjct: 384 PPSAAWGAPTPAAPAAPPPAAAP-------PVPPAAPARPAAARPA--PAPAPPAAAAPP 434

Query: 764 PPSS 767
             S+
Sbjct: 435 ARSA 438

Length = 576

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.7 bits (109), Expect = 1e-04
 Identities = 26/158 (16%), Positives = 42/158 (26%), Gaps = 35/158 (22%)

Query: 612 PPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSG 671
             A      +A   +++   P   P P  +     ++  P+ +    P P P P P    
Sbjct: 386 GVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPA 445

Query: 672 KGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKA 731
             + +  + S   +  P   P                  P P   P P    A       
Sbjct: 446 GNAPAGGAPSPPPAAAPSAQP-----------------APAPAAAPEPTAAPAP------ 482

Query: 732 LLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLG 769
             + P  P+P             P  P  P  P  +  
Sbjct: 483 --APPAAPAP----------AAAPAAPAAPAAPAGADD 508

Length = 824

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 45.5 bits (108), Expect = 1e-04
 Identities = 27/115 (23%), Positives = 31/115 (26%), Gaps = 2/115 (1%)

Query: 495 GNPPCFPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNN 554
             P  F P+PS   +  P PP  P   P       P      PP PP PP          
Sbjct: 214 VQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQ 273

Query: 555 SFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPP 609
           +   P   P P P          P PPP  P        P   +           
Sbjct: 274 AQPPPQNQPTPHPGLPQGQN--APLPPPQQPQLLPLVQQPQGQQRGPQFREQLVQ 326

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 45.8 bits (108), Expect = 1e-04
 Identities = 52/258 (20%), Positives = 72/258 (27%), Gaps = 13/258 (5%)

Query: 497 PPCFPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSF 556
           PP   P+P  P +  P     P ++   A      P  A PP+  P    P  ++   + 
Sbjct: 696 PPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRAR 755

Query: 557 LSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPP--PPPA 614
                P    P +      +P PPP  P         P P +  RG P P PPP   P +
Sbjct: 756 PPAAAPGRARPPAAAPGAPTPQPPPQAP---------PAPQQRPRGAPTPQPPPQAGPTS 806

Query: 615 FSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGS 674
                 +A                     G+ S   P+         P P P S +    
Sbjct: 807 MQLMPRAAPGQQGPTKQILRQLLTGGVKRGRPSLKKPAALERQAAAGPTPSPGSGTSDKI 866

Query: 675 SSLPSTSSIGSPPPPPPPPPSFS--GRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKAL 732
              P        P              +S V    ++         P  P   P S +A 
Sbjct: 867 VQAPVFYPPVLQPIQVMRQLGSVRAAAASTVTQAPTEYTGERRGVGPMHPTDIPPSKRAK 926

Query: 733 LSAPPHPSPTSRSSQPSF 750
             A     P       SF
Sbjct: 927 TDAYVESQPPHGGQSHSF 944

Length = 991

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.9 bits (109), Expect = 1e-04
 Identities = 21/124 (16%), Positives = 33/124 (26%), Gaps = 16/124 (12%)

Query: 767 SLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPP----P 822
           +L ++    Q    +     P     P     + P A P P +       +P P      
Sbjct: 355 TLIQLAQLTQKGDDASGGRGPKQHIKP---VFTQPAAAPQPSA---AAAASPSPSQSSAA 408

Query: 823 PPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPPPGVKSSSVPPP-PLPSVGK 881
             P    +        PP     P A  P    V P    P  V+ +       +P    
Sbjct: 409 AQPSAPQSA-TQPAGTPPTVSVDPPAAVP----VNPPSTAPQAVRPAQFKEEKKIPVSKV 463

Query: 882 GKVT 885
             + 
Sbjct: 464 SSLG 467

Length = 614

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.5 bits (108), Expect = 1e-04
 Identities = 18/119 (15%), Positives = 31/119 (26%), Gaps = 20/119 (16%)

Query: 720 PPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAP 779
                     K + + P      S ++  S  P        P  P S+            
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSA------------ 417

Query: 780 TSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPP-------PPPLGPAR 831
            +QPA  PP   +    +  +      P ++        +  P        P  L P +
Sbjct: 418 -TQPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQ 475

Length = 614

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 46.2 bits (109), Expect = 1e-04
 Identities = 48/292 (16%), Positives = 77/292 (26%), Gaps = 24/292 (8%)

Query: 577 PPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPP 636
           P      PP   +  + P+P   +     P   P P  +  +   A  +     P   P 
Sbjct: 345 PVASVDVPPAQPTVAWQPVPGPQT---GEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPV 401

Query: 637 PPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSF 696
            P   +Y   +          P P  P   P ++      +   +           P S 
Sbjct: 402 QPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQST 461

Query: 697 SGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPP 756
                      ++ P    P P                    P P    ++P+       
Sbjct: 462 YQTEQTYQQPAAQEPLYQQPQPVEQQPV------------VEPEPVVEETKPA------- 502

Query: 757 PPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPIN 816
            PP          +   + QLA   QP   P   P P   S   P     PP +      
Sbjct: 503 RPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPP-VEAAAAV 561

Query: 817 APRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSR-GVMPSPPPPPGVK 867
           +P             + A +  P  +      P P  + G+ P  P P  ++
Sbjct: 562 SPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEGIGPQLPRPKRIR 613

Length = 1355

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 45.0 bits (107), Expect = 1e-04
 Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 7/101 (6%)

Query: 588 SSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGS 647
           S      +P +TS    P   P P       D++   S +  V   P P   P    + +
Sbjct: 155 SQNSGQSVPLDTSTTTDPATTPAPAAP---VDTTPTNSQTPAVATAPAPAVDPQ---QNA 208

Query: 648 STMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPP 688
              PS +++     P P  P+    G++ LP+  +  S P 
Sbjct: 209 VVAPSQANVDTAATPAPAAPATPD-GAAPLPTDQAGVSTPA 248

Length = 331

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 44.5 bits (105), Expect = 2e-04
 Identities = 57/253 (22%), Positives = 70/253 (27%), Gaps = 14/253 (5%)

Query: 647 SSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPST 706
           SS   S        PP P   +      + L   ++   P P P  P     + S  P +
Sbjct: 36  SSEAHSFHVDSTKQPPAPEQVAKHELADAPLQQVNAALPPAPAPQSPQPDQQQQSQAPPS 95

Query: 707 TSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPP------P 760
                  PP      P       +     P  P P       +  P PPP  P       
Sbjct: 96  HQYPSQLPPQQVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQPPPQVPQQQQYQS 155

Query: 761 PPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIP----MAPPPPPSIGCKPIN 816
           PP  P        + Q AP      P   P  P+S   + P    MA  PP S       
Sbjct: 156 PPQQPQYQQNPPPQAQSAPQVSGLYPEESPYQPQSYPPNEPLPSSMAMQPPYSGAPPSQQ 215

Query: 817 APRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSP-PSRGVMPSPPPPPGVKSSSVPPPP 875
              PP P P       G    P    P     P      G   S PPP      SV    
Sbjct: 216 FYGPPQPSP---YMYGGPGGRPNSGFPSGQQPPPSQGQEGYGYSGPPPSKGNHGSVASYA 272

Query: 876 LPSVGKGKVTSGP 888
                +   T+ P
Sbjct: 273 PQGSSQSYSTAYP 285

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1)

 Score = 44.8 bits (105), Expect = 2e-04
 Identities = 53/290 (18%), Positives = 80/290 (27%), Gaps = 27/290 (9%)

Query: 502 PSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAP--------PPSPPPPPPPPLPSSTN 553
           P+ +SP +   +      S      GV     S P          SP      P+ ++  
Sbjct: 509 PNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGTTSVPNATSPQVTEESPVNNTNT 568

Query: 554 NSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPP 613
               S P       ++  +   S P    P    SS   +P  + TS  P      P   
Sbjct: 569 PVVTSAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSS-HSTPRSNSTSTTPLLTSAHPTGG 627

Query: 614 AFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPP------PPPP 667
               +++ +V ST+ +    P P P  +       + P  SS    P         P P 
Sbjct: 628 ENITEETPSVPSTTHVSTLSPGPGPGTT----SQVSGPGNSSTSRYPGEVHVTEGMPNPN 683

Query: 668 SFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPN 727
           + S    S   +     +              +S    T+         P     A    
Sbjct: 684 ATSPSAPSGQKTAVPTVTSTG--------GKANSTTKETSGSTLMASTSPHTNEGAFRTT 735

Query: 728 SSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQL 777
              A    PP  S   R       PP        P PP+     +N   L
Sbjct: 736 PYNATTYLPPSTSSKLRPRWTFTSPPVTTKQATVPVPPTQHPDHSNLSML 785

This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.0 bits (107), Expect = 2e-04
 Identities = 24/76 (31%), Positives = 32/76 (42%)

Query: 593 SPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPS 652
           S   S T++ PPPP   PPPPA +        +     PPPPPP    +     +     
Sbjct: 514 SGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPAD 573

Query: 653 TSSIGPPPPPPPPPPS 668
           +S   P P  P P P+
Sbjct: 574 SSPPPPIPEEPTPSPT 589

Length = 620

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 45.7 bits (109), Expect = 2e-04
 Identities = 21/123 (17%), Positives = 27/123 (21%), Gaps = 36/123 (29%)

Query: 734 SAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLP 793
                 +PT+ ++  +     P   P    P +           AP    A  P  PP P
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAP----------APAPPAAAAPAAPPKP 86

Query: 794 KSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPS 853
                    A                   P  P   A          PA         P 
Sbjct: 87  ---------AAAAAA-----------AAAPAAPPAAA------AAAAPAAAAVEDEVTPL 120

Query: 854 RGV 856
           RG 
Sbjct: 121 RGA 123

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 45.3 bits (108), Expect = 2e-04
 Identities = 17/104 (16%), Positives = 32/104 (30%), Gaps = 17/104 (16%)

Query: 501 PPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPP 560
           P S ++P + A        +  A+ +   P   +  PP+   P  PP P        +  
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKP--------AAA 89

Query: 561 PPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPP 604
                 P++      +      P       + +P+     RG  
Sbjct: 90  AAAAAAPAAP----PAAAAAAAPAAAAVEDEVTPL-----RGAA 124

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 44.9 bits (107), Expect = 2e-04
 Identities = 16/102 (15%), Positives = 23/102 (22%), Gaps = 28/102 (27%)

Query: 690 PPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPS 749
           P    + +  ++   +  S     P    P  PA  P        A   P+         
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAP-------PAAAAPAAP------- 83

Query: 750 FHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPP 791
             P P         P             AP +  A   P   
Sbjct: 84  --PKPAAAAAAAAAPA------------APPAAAAAAAPAAA 111

Length = 1228

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 45.2 bits (107), Expect = 2e-04
 Identities = 28/145 (19%), Positives = 39/145 (26%), Gaps = 15/145 (10%)

Query: 698 GRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPP 757
           GR+++     S  PP      P P       +      P  P P      P+    P   
Sbjct: 623 GRATVGEMIISGFPPVFKTALPRPDYNRGGEA----GGPGVPGPV-PVGMPAHTARPSRV 677

Query: 758 PPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINA 817
               P  P++             +  A   P P  P      +P  P  P + G  P  +
Sbjct: 678 ARGDPVRPTA----------HHAALRAPQAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGS 727

Query: 818 PRPPPPPPPLGPARSGAVLPPPPPA 842
                P  P  P   GA        
Sbjct: 728 SLIASPTAPPEPEPPGAEQADGAEN 752

Length = 753

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 45.2 bits (107), Expect = 2e-04
 Identities = 30/127 (23%), Positives = 38/127 (29%), Gaps = 23/127 (18%)

Query: 517 PPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPPPPP---PPLPSSTNNN 573
           PP    A           A  P  P P P  +P+ T     + P       P+  + ++ 
Sbjct: 636 PPVFKTALPRPDYNRGGEAGGPGVPGPVPVGMPAHT-----ARPSRVARGDPVRPTAHHA 690

Query: 574 FISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPP 633
            +  P  P P          P        PPP  P    PA  G    A        P  
Sbjct: 691 ALRAPQAPRPGG--------PPGGGGGLPPPPDLPAAAGPAPCGSSLIA-------SPTA 735

Query: 634 PPPPPPP 640
           PP P PP
Sbjct: 736 PPEPEPP 742

Length = 753

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 44.6 bits (106), Expect = 2e-04
 Identities = 28/143 (19%), Positives = 36/143 (25%), Gaps = 18/143 (12%)

Query: 623 VRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSS 682
           VR       P        +         P  +S  P  P   PP +              
Sbjct: 66  VRVHRVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQV------------ 113

Query: 683 IGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPT 742
               PP   P P+       V     +  P  P   P  P   P       SAP      
Sbjct: 114 ----PPQHAPRPAQPAPQP-VQQPAYQPQPEQPLQQPVSPQVAPAPQPV-HSAPQPAQQA 167

Query: 743 SRSSQPSFHPPPPPPPPPPPPPP 765
            + ++P   P P P   P P   
Sbjct: 168 FQPAEPVAAPQPEPVAEPAPVMD 190

Length = 333

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.5 bits (105), Expect = 2e-04
 Identities = 21/68 (30%), Positives = 23/68 (33%), Gaps = 2/68 (2%)

Query: 701 SIVPSTTSKGPPPPPPPPPPPPAAGP-NSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPP 759
           S   S   K   P P  P P    GP             PSP S  + P   PP     P
Sbjct: 383 SPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPT-PEQQPPVARSAP 441

Query: 760 PPPPPPSS 767
            PP P +S
Sbjct: 442 LPPSPQAS 449

Length = 620

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.8 bits (106), Expect = 2e-04
 Identities = 23/115 (20%), Positives = 31/115 (26%), Gaps = 15/115 (13%)

Query: 759 PPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAP 818
                P   +  +    Q A   QP+      P P    +S    P  P S        P
Sbjct: 370 SGGRGPKQHIKPVFT--QPAAAPQPSAAAAASPSPSQ--SSAAAQPSAPQSAT-----QP 420

Query: 819 RPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPPPGVKSSSVPP 873
              PP   + P  +  V PP      +  A     +        P    SS  P 
Sbjct: 421 AGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEK------KIPVSKVSSLGPS 469

Length = 614

>gnl|CDD|177614 PHA03377, PHA03377, EBNA-3C; Provisional

 Score = 45.4 bits (107), Expect = 2e-04
 Identities = 88/440 (20%), Positives = 115/440 (26%), Gaps = 73/440 (16%)

Query: 502 PSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPP---PPPPP----------- 547
           P    P      P  P H +P   + VI   +  PP SPP     P PP           
Sbjct: 450 PERPGPSDQPSVPVEPAHLTPVEHTTVI---LHQPPQSPPTVAIKPAPPPSRRRRGACVV 506

Query: 548 ----------LPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPS 597
                     + ++     ++ P  P                   PP    S    P  S
Sbjct: 507 YDDDIIEVIDVETTEEEESVTQPAKPHRKVQDGFQRSGRRQKRATPPKVSPSDRGPPKAS 566

Query: 598 ETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIG 657
                PP   P       +G    A  ST           PP S  G      PS++   
Sbjct: 567 PPVMAPPSTGPRVMATPSTGPRDMAPPSTGPRQQAKCKDGPPAS--GPHEKQPPSSAPRD 624

Query: 658 PPP--------------PPPPPPPSF----SGKGSSSL--PSTSSIGSPPPPPPPPPSFS 697
             P                 P P SF    +G+  S +    +S         PP PS+ 
Sbjct: 625 MAPSVVRMFLRERLLEQSTGPKPKSFWEMRAGRDGSGIQQEPSSRRQPATQSTPPRPSWL 684

Query: 698 GRSSIVPST-TSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPP 756
               ++PS    +  P             P S +          P   S  P   PPP  
Sbjct: 685 PSVFVLPSVDAGRAQPSEESHLSSMSPTQPISHEEQPRYEDPDDPLDLSLHPDQAPPPSH 744

Query: 757 PPP-------------------PPPPPPSSLG-KITNKLQLAPTSQPAVPPPPPPLPKSC 796
             P                   P PP    LG +      +  +S P    P     +  
Sbjct: 745 QAPYSGHEEPQAQQAPYPGYWEPRPPQAPYLGYQEPQAQGVQVSSYPGYAGPWGLRAQHP 804

Query: 797 STSIPMAPPPPPSIGCKPIN--APRPPPPPPPLGP-ARSGAVLPPPPPAPKLPTAPSPPS 853
                 A          P    APRPP  PP     A  G       P  +  T P    
Sbjct: 805 RYRHSWAYWSQYPGHGHPQGPWAPRPPHLPPQWDGSAGHGQDQVSQFPHLQSETGPPRLQ 864

Query: 854 RGVMPSPPPPPGVKSSSVPP 873
              +P  P    + SSS P 
Sbjct: 865 LSQVPQLPYSQTLVSSSAPS 884

Length = 1000

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.9 bits (107), Expect = 2e-04
 Identities = 15/70 (21%), Positives = 22/70 (31%)

Query: 704 PSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPP 763
           PS    G  PP     P   A   +  A  +AP    P +  +           PP P  
Sbjct: 392 PSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPAA 451

Query: 764 PPSSLGKITN 773
            P    ++ +
Sbjct: 452 APQPAVRLNS 461

Length = 598

>gnl|CDD|237015 PRK11901, PRK11901, hypothetical protein; Reviewed

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 37/188 (19%), Positives = 50/188 (26%), Gaps = 37/188 (19%)

Query: 697 SGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPP 756
           SG SS+   ++     P                           P S          P P
Sbjct: 82  SGSSSL---SSGNQSSPSAANNTSDGHDASGVKNTAPPQDISAPPIS----------PTP 128

Query: 757 PPPPPPPPPSSL------GKITNKL-----QLAPTSQPAVPPPPPPLPKSCSTSIPMAPP 805
               PP  P+        G I++ L     Q+   SQ A            ++++P AP 
Sbjct: 129 TQAAPPQTPNGQQRIELPGNISDALSQQQGQVNAASQNAQGN---------TSTLPTAPA 179

Query: 806 PPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPPPG 865
                    + A     P PP  PA       P     K  T   PP+    P       
Sbjct: 180 TVAPSKGAKVPATAETHPTPPQKPATKK----PAVNHHKTATVAVPPATSGKPKSGAASA 235

Query: 866 VKSSSVPP 873
              SS P 
Sbjct: 236 RALSSAPA 243

Length = 327

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.5 bits (105), Expect = 3e-04
 Identities = 30/133 (22%), Positives = 44/133 (33%), Gaps = 3/133 (2%)

Query: 487 QQSLVLTEGNPPCFPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPP 546
           +Q+     G  P   P+P++  + A  P        A+A+   P   +      P    P
Sbjct: 437 RQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDP 496

Query: 547 PLPSSTNNSFLSPPP-PPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPM--PSETSRGP 603
           P        F SP P  P   P+      I  P    P   F +   +P   P+  +   
Sbjct: 497 PPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAA 556

Query: 604 PPPPPPPPPPAFS 616
             P   P PP  S
Sbjct: 557 TEPVVAPRPPRAS 569

Length = 700

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 21/105 (20%), Positives = 27/105 (25%), Gaps = 4/105 (3%)

Query: 470 SEPIDQVSNETVLSSLHQQSLVLTEGNPPCFPPSPSSPQSIAPTPPLPPHSSPASASGVI 529
            E  D  S            +      P        S    AP+        P+      
Sbjct: 174 GEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPE---- 229

Query: 530 PLPMSAPPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNF 574
                +PPP P  PPPPP+      S   P PP      +     
Sbjct: 230 SPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGI 274

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.5 bits (105), Expect = 3e-04
 Identities = 22/153 (14%), Positives = 35/153 (22%), Gaps = 3/153 (1%)

Query: 739 PSPTSRSSQPSFHPPPPP--PPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSC 796
           P+ T   +     P       P P     +++G        A T        P     + 
Sbjct: 360 PAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAA 419

Query: 797 STSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGV 856
           +T    APP  P+                P+    +           +    P+      
Sbjct: 420 AT-RAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSAS 478

Query: 857 MPSPPPPPGVKSSSVPPPPLPSVGKGKVTSGPA 889
            P+   PP       P    PS           
Sbjct: 479 APASDAPPDAAFEPAPRAAAPSAATPAAVPDAR 511

Length = 830

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.0 bits (104), Expect = 3e-04
 Identities = 23/79 (29%), Positives = 25/79 (31%), Gaps = 7/79 (8%)

Query: 817 APRPPPPP-PPLGPARSG-----AVLPPPPPAPKLPTAPSPPSRGVMPSPPPPPGVKSSS 870
            P P P P  P   A S      A    P  A      P  P R     PP PP   +  
Sbjct: 361 VPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPP 420

Query: 871 VPPPPLPSVGKGKVTSGPA 889
           VP  P  S  K    + P 
Sbjct: 421 VPHTP-ESAPKLTRAAIPV 438

Length = 585

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.4 bits (105), Expect = 3e-04
 Identities = 27/116 (23%), Positives = 36/116 (31%), Gaps = 15/116 (12%)

Query: 693 PPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHP 752
                 +  I P  T      P   P P  AA  + S +  SA   PS    ++QP+  P
Sbjct: 370 SGGRGPKQHIKPVFTQ-----PAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTP 424

Query: 753 PP---PPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPP 805
           P     PP   P  PPS+  +                    P+ K  S       P
Sbjct: 425 PTVSVDPPAAVPVNPPSTAPQAV-------RPAQFKEEKKIPVSKVSSLGPSTLRP 473

Length = 614

>gnl|CDD|218881 pfam06070, Herpes_UL32, Herpesvirus large structural phosphoprotein UL32

 Score = 44.5 bits (105), Expect = 3e-04
 Identities = 64/390 (16%), Positives = 87/390 (22%), Gaps = 55/390 (14%)

Query: 518 PHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISP 577
           P  SP+  SG     M     +     P     ST             + +S    +   
Sbjct: 371 PGLSPSPNSGK---EMPGILTTENLDLPLASTDSTEMDPEDKRGGAVKINNSGILAWGLK 427

Query: 578 PPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPP 637
            P           D   +   +        PP P        SS     S   P      
Sbjct: 428 TPGLA------VNDERSIAVSSDGITDVLDPPSP----LRLHSSDKVIDSVSPPSKRRVS 477

Query: 638 PPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPP--------P 689
            P S          + +                 + SS   S  SI    P        P
Sbjct: 478 APASRLDDAKRPEVTATPESSGSDSEGGASGREDETSSDAESVVSIKELRPRIGFINKSP 537

Query: 690 PPPPPSFSGRSSIV------PSTTSKGPPPPPPPP----PPPPAAGPNSSKALLSAPPHP 739
           PP  P  S R+ IV      PST     P P          P A              + 
Sbjct: 538 PPKSPPKSRRTLIVALSLASPSTAGSPRPKPSLGKFVIGTDPFAFANTVRLTDNMRGGNG 597

Query: 740 SPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKL-------------QLAPTSQPAVP 786
             +S   + S    P   P     P +  GK  +                  P+      
Sbjct: 598 VGSSVKPKGSASSKPLTGPGSDLKPATLNGKTPSSSLVGAARNAGASSKVKIPSGLGGFT 657

Query: 787 PPPP---PLPKSCSTSIPMAPPPPPSIGCKPINAPRPPP-----PPPPLGPARSGAVLPP 838
            P        +   TS    P           N  +            +    +G     
Sbjct: 658 SPISLLESALEDVLTSATSTPVKKNDPYLWDTNGEKAGGGTESASTTDVFQNFAGLNKKT 717

Query: 839 P---PPAPKLPTAPSPPSRGVMPSPPPPPG 865
           P   P  PK P + +  S          PG
Sbjct: 718 PVGGPFQPKPPLSRALDSASSPGGSGGKPG 747

The large phosphorylated protein (UL32-like) of herpes viruses is the polypeptide most frequently reactive in immuno-blotting analyses with antisera when compared with other viral proteins. Length = 777

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.3 bits (105), Expect = 3e-04
 Identities = 16/63 (25%), Positives = 20/63 (31%), Gaps = 5/63 (7%)

Query: 705 STTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPP 764
                 P      P P   A P  +    +APP P         +  P P P PP    P
Sbjct: 379 RGAPAPPSAAWGAPTPAAPAAPPPA----AAPPVPPAAPA-RPAAARPAPAPAPPAAAAP 433

Query: 765 PSS 767
           P+ 
Sbjct: 434 PAR 436

Length = 576

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.1 bits (105), Expect = 3e-04
 Identities = 18/82 (21%), Positives = 23/82 (28%), Gaps = 7/82 (8%)

Query: 690 PPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPS 749
           PP P    G            P     P     A       A L+A P  +  + +    
Sbjct: 391 PPSPGGGGGGPP-GGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAA---- 445

Query: 750 FHPPPPPPPPPPPPPPSSLGKI 771
             PP P   P P    +S   I
Sbjct: 446 --PPAPAAAPQPAVRLNSFEDI 465

Length = 598

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 43.8 bits (104), Expect = 4e-04
 Identities = 16/100 (16%), Positives = 32/100 (32%), Gaps = 14/100 (14%)

Query: 678 PSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPP---PPPPPPPPAAGPNSSKALLS 734
           P+ ++  +  PPP   P+   R    P+  +  P P                 +  A  +
Sbjct: 54  PAAAAPAAAQPPPAAAPAAVSR----PAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPA 109

Query: 735 APPHPSPTSRSSQPSFHPP-------PPPPPPPPPPPPSS 767
           AP   +P + + + +               P P  P  ++
Sbjct: 110 APEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAA 149

Length = 484

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 43.3 bits (102), Expect = 4e-04
 Identities = 30/74 (40%), Positives = 33/74 (44%), Gaps = 6/74 (8%)

Query: 804 PPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPP 863
           P PPP        AP P  PPPP  PA       PP P P  P A  PP      +PPPP
Sbjct: 41  PAPPPPPPSTAAAAPAPAAPPPPPPPA------APPAPQPDDPNAAPPPPPADPNAPPPP 94

Query: 864 PGVKSSSVPPPPLP 877
           P   ++  PP P P
Sbjct: 95  PVDPNAPPPPAPEP 108

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.1 bits (105), Expect = 4e-04
 Identities = 18/72 (25%), Positives = 25/72 (34%)

Query: 657 GPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPP 716
           GPP P         G G+   P+ ++        P     +   + VP   +    PP P
Sbjct: 390 GPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAP 449

Query: 717 PPPPPPAAGPNS 728
              P PA   NS
Sbjct: 450 AAAPQPAVRLNS 461

Length = 598

>gnl|CDD|219916 pfam08580, KAR9, Yeast cortical protein KAR9

 Score = 44.1 bits (104), Expect = 4e-04
 Identities = 44/224 (19%), Positives = 62/224 (27%), Gaps = 39/224 (17%)

Query: 619 DSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLP 678
            S   +   SI         P S     SS+  S S I  PP   P     S +  +   
Sbjct: 370 SSKIQQIRDSISVSGSDYSNPGSSIDTPSSSPSS-SVIMTPPDSGPGSNVSSRRVGTPGS 428

Query: 679 STSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPH 738
            +  +G+             R +I P+  S       P   P   +    S       P+
Sbjct: 429 KSDRVGAV---------LLRRMNIKPTLAS------IPDEKPSNISVFEDS----ETSPN 469

Query: 739 PSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCST 798
            S   R         PPP                NKL+L  +S P + P    +     +
Sbjct: 470 SSTLLRD--------PPPKKCGEESGHLPNNPFFNKLKLTLSSIPPLSPRQSIITLPTPS 521

Query: 799 SIPMAPPPPPSIGCKPINAPR-----PPPPPPPLGPARSGAVLP 837
                  P   I    +           PPP P   +R GA   
Sbjct: 522 R------PASRISSLSLRLGSYSGSIVSPPPYPTLVSRKGAAGL 559

The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase. Length = 626

>gnl|CDD|183756 PRK12799, motB, flagellar motor protein MotB; Reviewed

 Score = 43.9 bits (103), Expect = 4e-04
 Identities = 21/121 (17%), Positives = 39/121 (32%), Gaps = 1/121 (0%)

Query: 501 PPSPSSPQSIAPTPPLPPHSSPA-SASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSP 559
           P +  +P S          SS A  +  VIP  ++    +        L S+        
Sbjct: 300 PVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPSDVT 359

Query: 560 PPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKD 619
            P    LP++   N    P         S+ + +   +  +   P  P    P + + +D
Sbjct: 360 LPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLPAAPASNIPVSPTSRD 419

Query: 620 S 620
           +
Sbjct: 420 A 420

Length = 421

>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF; Provisional

 Score = 43.8 bits (103), Expect = 4e-04
 Identities = 33/201 (16%), Positives = 52/201 (25%), Gaps = 3/201 (1%)

Query: 622 AVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTS 681
             RS +      P P P            P   S            S +    +++    
Sbjct: 57  TARSDTPATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVASAAEDMIAAMALRQ 116

Query: 682 SIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSP 741
            +  P   P   P     S   P+  +          P    A     + L +     +P
Sbjct: 117 PVSVPRQAPAAAP-VRAASIPSPAAQALAHAAAVRTAPRQEHALSAVPEQLFADFLTTAP 175

Query: 742 TSRSSQPSFHPPPPPPPPPPPPPPSSLGKITN--KLQLAPTSQPAVPPPPPPLPKSCSTS 799
             R+   +     P P P      ++          QL           P  LP +    
Sbjct: 176 VPRAPVQAPVVAAPAPVPAIAAALAAHAAYAQDDDEQLDDDGFDLDDALPQILPPAALPP 235

Query: 800 IPMAPPPPPSIGCKPINAPRP 820
           I +AP  P ++      AP P
Sbjct: 236 IVVAPAAPAALAAVAAAAPAP 256

Length = 559

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 43.2 bits (102), Expect = 4e-04
 Identities = 28/180 (15%), Positives = 35/180 (19%), Gaps = 17/180 (9%)

Query: 700 SSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPP 759
            S V        P  PPP    P   P       +      P     Q    P   P   
Sbjct: 41  QSGVAEFPWDPSPQAPPPVAQLPQPLPQ---PPPTQALQALPAGD-QQQHNTPTGSPAAN 96

Query: 760 PPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPR 819
           PP       G     +Q  P  Q      P         +   A  P       P     
Sbjct: 97  PPATFALPAGPAGPTIQTEP-GQLYPVQVPV------MVTQNPANSPLDQ----PAQQRA 145

Query: 820 PPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPPPGVKSSSVPPPPLPSV 879
                   G     +   P           S   +      PP     +       L  +
Sbjct: 146 LQQLQQRYGAP--ASGQLPSQQQSAQKNDESQLQQQPNGETPPQQTDGAGDDESEALVRL 203

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.8 bits (104), Expect = 5e-04
 Identities = 22/115 (19%), Positives = 30/115 (26%), Gaps = 1/115 (0%)

Query: 776 QLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAV 835
            + P    A    PP    S        P  P +    P           P   + + A 
Sbjct: 587 VVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPA-APAAPAPAGAAAAPAEASAAPAP 645

Query: 836 LPPPPPAPKLPTAPSPPSRGVMPSPPPPPGVKSSSVPPPPLPSVGKGKVTSGPAS 890
               P       A    S G    P    G   ++ PP P P+       + PA 
Sbjct: 646 GVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQ 700

Length = 824

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 43.4 bits (103), Expect = 5e-04
 Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 8/94 (8%)

Query: 678 PSTSSIGSPPPPPP-PPPSFSGRSSIVPSTTSKGPPPP---PPPPPPPPAAGPNSSKALL 733
           P  ++  +   PPP   P+   R    P+  +  P P                 +  A  
Sbjct: 53  PPAAAAPAAAQPPPAAAPAAVSR----PAAPAAEPAPWLVEHAKRLTAQREQLVARAAAP 108

Query: 734 SAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSS 767
           +AP   +P + + + +               P  
Sbjct: 109 AAPEAQAPAAPAERAAAENAARRLARAAAAAPRP 142

Length = 484

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 43.5 bits (102), Expect = 5e-04
 Identities = 20/87 (22%), Positives = 27/87 (31%), Gaps = 14/87 (16%)

Query: 716 PPPPPPPAAGPNSSKALLSA-------PPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSL 768
           PP PP  A  P   K   S+        P P+       P+  P    P   P   P   
Sbjct: 173 PPNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQ-- 230

Query: 769 GKITNKLQLAPTSQPAVPPPPPPLPKS 795
                +  + P  QP    P    P++
Sbjct: 231 -----QQPVQPAQQPTPQNPAQQPPQT 252

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 43.8 bits (103), Expect = 5e-04
 Identities = 20/44 (45%), Positives = 21/44 (47%), Gaps = 14/44 (31%)

Query: 578 PPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSS 621
           PPPPPPPP F               PP  PPPPPPP  + K  S
Sbjct: 9   PPPPPPPPGFE--------------PPSQPPPPPPPGVNVKKRS 38

Length = 2365

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.4 bits (103), Expect = 6e-04
 Identities = 18/88 (20%), Positives = 23/88 (26%), Gaps = 12/88 (13%)

Query: 498 PCFPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFL 557
                  ++     PTP   P   PA          SAP        P P P+       
Sbjct: 363 AFISEIANASAPANPTPAPNPSPPPAPI------QPSAPKTKQAATTPSPPPAKA----- 411

Query: 558 SPPPPPPPLPSSTNNNFISPPPPPPPPP 585
             PP P P   +  +          PP 
Sbjct: 412 -SPPIPVPAEPTEPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 43.4 bits (102), Expect = 6e-04
 Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 3/79 (3%)

Query: 535 APPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSP 594
           A  P PP   P   P S++ +  +   P   LP  + N F+  P P  P    +S    P
Sbjct: 185 AIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPAS---IP 241

Query: 595 MPSETSRGPPPPPPPPPPP 613
            P          PPP PPP
Sbjct: 242 APPIPPVIQYVAPPPVPPP 260

Length = 582

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.2 bits (102), Expect = 6e-04
 Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 2/62 (3%)

Query: 814 PINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPPPGVKSSSVPP 873
           P  A   P P  P  P  + A  PP PPA     A + P+    P     P  +S+    
Sbjct: 385 PSAAWGAPTPAAPAAPPPAAA--PPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAA 442

Query: 874 PP 875
             
Sbjct: 443 AA 444

Length = 576

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.4 bits (103), Expect = 6e-04
 Identities = 17/79 (21%), Positives = 21/79 (26%), Gaps = 5/79 (6%)

Query: 802 MAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPP 861
             P P    G  P     P  P     P  + A      PA  L   P         +  
Sbjct: 390 GPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAA-----AAAA 444

Query: 862 PPPGVKSSSVPPPPLPSVG 880
            PP   ++  P   L S  
Sbjct: 445 APPAPAAAPQPAVRLNSFE 463

Length = 598

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 43.8 bits (103), Expect = 6e-04
 Identities = 20/53 (37%), Positives = 20/53 (37%), Gaps = 25/53 (47%)

Query: 710 GPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPP 762
             PP  PPPPPPP                         P F PP  PPPPPPP
Sbjct: 3   SLPPGNPPPPPPP-------------------------PGFEPPSQPPPPPPP 30

Length = 2365

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 43.1 bits (102), Expect = 6e-04
 Identities = 16/64 (25%), Positives = 20/64 (31%)

Query: 705 STTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPP 764
            T    P   P       A      K   +AP    P +    P     PP P P   PP
Sbjct: 119 DTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPP 178

Query: 765 PSSL 768
           P+ +
Sbjct: 179 PTPV 182

Length = 418

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 43.5 bits (102), Expect = 7e-04
 Identities = 42/245 (17%), Positives = 62/245 (25%), Gaps = 7/245 (2%)

Query: 652 STSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGP 711
               +   PP        +    +  P        P   P P  +  +S           
Sbjct: 336 PVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNE 395

Query: 712 PPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKI 771
           P   P  P  P   P + +        P+P   + QP + P P  P              
Sbjct: 396 PLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQST 455

Query: 772 TNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPAR 831
                   T Q    P            +   P   P    +     RPP         +
Sbjct: 456 FAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPLYYFEEVEEK 515

Query: 832 SG------AVLPPPPPAPKLPTAPSPPSRGVMPSPPPPPGVKSSSVPPPPLPSVGKGKVT 885
                   A    P P P     P   S    PS    P V++++   P    V K  + 
Sbjct: 516 RAREREQLAAWYQPIPEPVKEPEPIKSSLKA-PSVAAVPPVEAAAAVSPLASGVKKATLA 574

Query: 886 SGPAS 890
           +G A+
Sbjct: 575 TGAAA 579

Length = 1355

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 43.0 bits (101), Expect = 7e-04
 Identities = 33/98 (33%), Positives = 41/98 (41%), Gaps = 7/98 (7%)

Query: 751 HPPPPPPPPPPPPPPSSLGKITNKL----QLAPTSQPAVPPPPPPLPKSCSTSIPMAPPP 806
            PPPP   P  PP  SSL    +          +  P +P P P  P +   SIP APP 
Sbjct: 187 QPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPASIP-APPI 245

Query: 807 PPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPK 844
           PP I  + +  P  PPP P +      AV    P  P+
Sbjct: 246 PPVI--QYVAPPPVPPPQPIIPIQHIRAVTGETPANPR 281

Length = 582

>gnl|CDD|177614 PHA03377, PHA03377, EBNA-3C; Provisional

 Score = 43.5 bits (102), Expect = 7e-04
 Identities = 67/349 (19%), Positives = 86/349 (24%), Gaps = 48/349 (13%)

Query: 497 PPCFPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPS------------PPPPP 544
           PP   P  + P+ +A     P   +P S            PP+            P    
Sbjct: 567 PPVMAPPSTGPRVMATPSTGPRDMAPPSTGPRQQAKCKDGPPASGPHEKQPPSSAPRDMA 626

Query: 545 PPPLPSSTNNSFLSPPPPPPPL-----------------PSSTNNNFISPPPPPPP--PP 585
           P  +        L     P P                  PSS         PP P   P 
Sbjct: 627 PSVVRMFLRERLLEQSTGPKPKSFWEMRAGRDGSGIQQEPSSRRQPATQSTPPRPSWLPS 686

Query: 586 CF---SSKDFSPMPSETSRGPPPPPPPP----PPPAFSGKDSSAVRSTSSIVPPPPPPPP 638
            F   S       PSE S      P  P      P +   D     S      PPP    
Sbjct: 687 VFVLPSVDAGRAQPSEESHLSSMSPTQPISHEEQPRYEDPDDPLDLSLHPDQAPPPSHQA 746

Query: 639 PPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSG 698
           P S + +  +          P PP  P   +    +  +  +S  G   P          
Sbjct: 747 PYSGHEEPQAQQAPYPGYWEPRPPQAPYLGYQEPQAQGVQVSSYPGYAGPWGLRAQHPRY 806

Query: 699 RSSIV---------PSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPS 749
           R S                  P PP  PP    +AG    +                Q S
Sbjct: 807 RHSWAYWSQYPGHGHPQGPWAPRPPHLPPQWDGSAGHGQDQVSQFPHLQSETGPPRLQLS 866

Query: 750 FHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCST 798
             P  P           S      +  + P      PPPP PL  S + 
Sbjct: 867 QVPQLPYSQTLVSSSAPSWSSPQPRAPIRPIPT-RFPPPPMPLQDSMAV 914

Length = 1000

>gnl|CDD|130706 TIGR01645, half-pint, poly-U binding splicing factor, half-pint family

 Score = 43.1 bits (101), Expect = 7e-04
 Identities = 35/155 (22%), Positives = 52/155 (33%), Gaps = 10/155 (6%)

Query: 754 PPPPPPPPPPPPSSLGKITNKLQLA-PTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGC 812
           P      P     +    T K+  A   +  AV  P    P + S+S+P        +  
Sbjct: 291 PATVSAIPAAAAVAAAAATAKIMAAEAVAGAAVLGPRAQSPATPSSSLPTDIGNKAVVS- 349

Query: 813 KPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPPPGVKSSSVP 872
                    PP P   PA    V P P   P     P PP    +PS   PPG+ + +  
Sbjct: 350 SAKKEAEEVPPLPQAAPA---VVKPGPMEIPT----PVPPPGLAIPSLVAPPGLVAPTEI 402

Query: 873 PPPLPSVGKGKVTSGPASHGRGRLNSGVSHA-PKK 906
            P   +  + K+         G L+  ++   P K
Sbjct: 403 NPSFLASPRKKMKREKLPVTFGALDDTLAWKEPSK 437

The proteins represented by this model contain three RNA recognition motifs (rrm: pfam00076) and have been characterized as poly-pyrimidine tract binding proteins associated with RNA splicing factors. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA. Length = 612

>gnl|CDD|217495 pfam03326, Herpes_TAF50, Herpesvirus transcription activation factor (transactivator)

 Score = 42.8 bits (101), Expect = 7e-04
 Identities = 43/222 (19%), Positives = 54/222 (24%), Gaps = 10/222 (4%)

Query: 581 PPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPP 640
            P            +P   S   P P    P  + S  D     + S        P  P 
Sbjct: 208 SPLSQFHGFTPHPSLPQPQSPLKPSPSSARPQQSESFSDVWPASTQSPREETSAEPLAPA 267

Query: 641 SFYGKGSSTMPSTSSIGPPPPPPP--------PPPSFSGKGSSSLPSTSSIGSPPPPPPP 692
           S   +  ST          P   P        P  S S       PST+     PP    
Sbjct: 268 SPSSRRPSTAQEEQIACSSPQAEPEQGVQSYVPQSSDSRPSCFPAPSTTQPTFLPPNTNK 327

Query: 693 PPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPP--HPSPTSRSSQPSF 750
                 R  +V      G             A          +PP   P  +S +  PS 
Sbjct: 328 KAKRDRRPQMVTPKQEGGAAVSQNHDGGTVRAPRGRPSGSGQSPPSNSPLLSSLADTPSG 387

Query: 751 HPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPL 792
               P    PP      L   ++K    P S     P    L
Sbjct: 388 AAHQPASLLPPAVVQQQLEDASDKQPPTPGSSLVPQPDEQEL 429

This family includes EBV BRLF1 and similar ORF 50 proteins from other herpesviruses. Length = 500

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.3 bits (102), Expect = 8e-04
 Identities = 22/120 (18%), Positives = 30/120 (25%), Gaps = 4/120 (3%)

Query: 775 LQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGA 834
           L   P        P        +   P A  P  +          P   P     AR+ A
Sbjct: 361 LAFRPGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVA 420

Query: 835 VLP--PPPPAPKLPTAPSPPSRGVMPSPPPPPGVKSSSVP--PPPLPSVGKGKVTSGPAS 890
             P    P    L  A    +RG   +P P P   ++      P           +  A 
Sbjct: 421 AAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAP 480

Length = 700

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.0 bits (102), Expect = 8e-04
 Identities = 23/94 (24%), Positives = 32/94 (34%), Gaps = 15/94 (15%)

Query: 548 LPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPP 607
           LPS+  +   +   P  P P+   +   +P  P  P             + T+  PPP  
Sbjct: 360 LPSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKT---------KQAATTPSPPPAK 410

Query: 608 PPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPS 641
             PP P        A  +  S  PP      PPS
Sbjct: 411 ASPPIPV------PAEPTEPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.8 bits (101), Expect = 8e-04
 Identities = 18/93 (19%), Positives = 25/93 (26%), Gaps = 1/93 (1%)

Query: 817 APRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPPPGVKSSSVPPPPL 876
           A     P   + P  +     P P A    + PSP        P  P      +  PP +
Sbjct: 369 ASGGRGPKQHIKPVFTQPAAAPQPSAAAAAS-PSPSQSSAAAQPSAPQSATQPAGTPPTV 427

Query: 877 PSVGKGKVTSGPASHGRGRLNSGVSHAPKKASL 909
                  V   P S     +        KK  +
Sbjct: 428 SVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPV 460

Length = 614

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.0 bits (102), Expect = 9e-04
 Identities = 17/73 (23%), Positives = 26/73 (35%)

Query: 501 PPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPP 560
             +  +P     +PP P  + P         P + PPP P          +   +  SPP
Sbjct: 518 SNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPP 577

Query: 561 PPPPPLPSSTNNN 573
           PP P  P+ +   
Sbjct: 578 PPIPEEPTPSPTK 590

Length = 620

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 43.0 bits (101), Expect = 9e-04
 Identities = 20/34 (58%), Positives = 21/34 (61%), Gaps = 8/34 (23%)

Query: 534 SAPPPSPPPPPPPP--LPSSTNNSFLSPPPPPPP 565
           S PP +PPPPPPPP   P S       PPPPPPP
Sbjct: 3   SLPPGNPPPPPPPPGFEPPS------QPPPPPPP 30

Length = 2365

>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein

 Score = 43.0 bits (101), Expect = 9e-04
 Identities = 53/232 (22%), Positives = 67/232 (28%), Gaps = 24/232 (10%)

Query: 651 PSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKG 710
           P + +  P  P   P P+ S  GSSS  S S   S         S     +  P T S  
Sbjct: 377 PPSRNTPPSAPSSNPEPAASSSGSSSSSSGSESSSGSDSESESSSSDSEENEPPRTASPE 436

Query: 711 PPPPPP------------PPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPP 758
           P PP               P     A   SS   +  P       +SS   +HP    PP
Sbjct: 437 PEPPSTNKWQLDNWLNKVNPHKVSPAESVSSNPPIKQPMEKEGKVKSSGSQYHPESKEPP 496

Query: 759 PPPPPPPSSLGKITNKLQLAPTSQPAVPPPP-----PPLPKSCSTSIPMAPPPPPSIGCK 813
           P          +   K    P S       P     PP  ++     P  P    +   +
Sbjct: 497 PKSSSKEKRRPRTAQK---GPESGRGKQKSPAQSEAPPQRRTVGKKQPKKPEKASAGDER 553

Query: 814 PINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSP-PSRGVMPSPPPPP 864
               P   P   P G   S    PP  P      +  P P +    S PP  
Sbjct: 554 TGLRPESEPGTLPYG---SSVQTPPDRPKAATKGSRKPSPRKEPKSSVPPAA 602

This family consists of AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental retardation syndrome) nuclear proteins. These proteins have been linked to human diseases such as acute lymphoblastic leukaemia and mental retardation. The family also contains a Drosophila AF4 protein homologue Lilliputian which contains an AT-hook domain. Lilliputian represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila. Length = 1154

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 42.5 bits (100), Expect = 0.001
 Identities = 28/164 (17%), Positives = 41/164 (25%), Gaps = 14/164 (8%)

Query: 492 LTEGNPPCFPPSPSSPQSIAPTPPLPP------------HSSPASASGVIPLPMSAPPPS 539
                     P   +  +      L                  + +        S+ P  
Sbjct: 778 AEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESSGPAR 837

Query: 540 PPPPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSET 599
           PP     P P+ ++ S  S P          N      PP P   P  ++   +   +  
Sbjct: 838 PPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAPP 897

Query: 600 SRGPPPPPPPPPPPAFSG--KDSSAVRSTSSIVPPPPPPPPPPS 641
           +  P P P P P              R     VPP     P PS
Sbjct: 898 AGAPAPRPRPAPRVKLGPMPPGGPDPRGGFRRVPPGDLHTPAPS 941

Length = 1352

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.8 bits (101), Expect = 0.001
 Identities = 17/90 (18%), Positives = 26/90 (28%), Gaps = 14/90 (15%)

Query: 497 PPCFPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSF 556
            P  PP+ + P  +A      P ++PA+A      P +      PP    P   +     
Sbjct: 413 APAAPPAAAPPAPVAAPAAAAPAAAPAAA------PAAVALAPAPPAQAAPETVAIPVRV 466

Query: 557 LSPPPPPPPLPSSTNNNFISPPPPPPPPPC 586
              P      P        +P   P     
Sbjct: 467 APEPAVASAAP--------APAAAPAAARL 488

Length = 618

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.6 bits (101), Expect = 0.001
 Identities = 22/88 (25%), Positives = 28/88 (31%)

Query: 615 FSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGS 674
              +  SA  +  +  PP   PPPP         T  +     PPPPP     S +    
Sbjct: 510 LESQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQ 569

Query: 675 SSLPSTSSIGSPPPPPPPPPSFSGRSSI 702
               S+     P  P P P   S    I
Sbjct: 570 IPADSSPPPPIPEEPTPSPTKDSSPEEI 597

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.6 bits (101), Expect = 0.001
 Identities = 25/71 (35%), Positives = 28/71 (39%)

Query: 501 PPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPP 560
           PP   SP   APTPPLP  ++ A      P P +A   S   P   P  SS        P
Sbjct: 525 PPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEP 584

Query: 561 PPPPPLPSSTN 571
            P P   SS  
Sbjct: 585 TPSPTKDSSPE 595

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.3 bits (100), Expect = 0.001
 Identities = 26/98 (26%), Positives = 34/98 (34%), Gaps = 23/98 (23%)

Query: 598 ETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIG 657
           E+  G        PPP                  PP P P   +                
Sbjct: 511 ESQSGSASNTAKTPPPP-------QKSPPPPAPTPPLPQPTATA---------------- 547

Query: 658 PPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPS 695
           PPP PPPPPP+ +   S++     +  SPPPP P  P+
Sbjct: 548 PPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPT 585

Length = 620

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 43.0 bits (102), Expect = 0.001
 Identities = 18/87 (20%), Positives = 25/87 (28%), Gaps = 5/87 (5%)

Query: 786 PPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKL 845
           P        + + +   A  P          A  P  P P    A + A  P P  A   
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAA-----APAAKAPAAPAPAPPAAAAPAAPPKPAAAAAA 92

Query: 846 PTAPSPPSRGVMPSPPPPPGVKSSSVP 872
             AP+ P      + P    V+    P
Sbjct: 93  AAAPAAPPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 42.5 bits (100), Expect = 0.001
 Identities = 27/116 (23%), Positives = 39/116 (33%), Gaps = 13/116 (11%)

Query: 505 SSPQSIAPTPPLPPHSSPASASGV---IPLPMSAPPPSPPPPPP---PPLPSSTNNSFLS 558
             P       P P ++    A G     P+P+  P  +  P       P+  + +++ L 
Sbjct: 634 GFPPVFKTALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDPVRPTAHHAALR 693

Query: 559 PPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPA 614
            P  P P         + PPPP  P          P P  +S    P  PP P P 
Sbjct: 694 APQAPRPGGPPGGGGGL-PPPPDLPAAA------GPAPCGSSLIASPTAPPEPEPP 742

Length = 753

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 42.1 bits (99), Expect = 0.001
 Identities = 23/107 (21%), Positives = 25/107 (23%), Gaps = 11/107 (10%)

Query: 500 FPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSP 559
            P  P       P     P S  A    V P    A   +P  P P   P       L P
Sbjct: 656 GPGVPGPVPVGMPAHTARP-SRVARGDPVRPTAHHAALRAPQAPRPGGPPGGGGG--LPP 712

Query: 560 PPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPP 606
           PP  P               P  PP         P P    +     
Sbjct: 713 PPDLPAAAGPAPCGSSLIASPTAPPE--------PEPPGAEQADGAE 751

Length = 753

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 42.6 bits (101), Expect = 0.001
 Identities = 17/135 (12%), Positives = 31/135 (22%), Gaps = 15/135 (11%)

Query: 614 AFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKG 673
           A +  D +A+   ++  P    PPP            P+  S    P   P P       
Sbjct: 42  ALADSDLAALAPPAAAAPAAAQPPPAA---------APAAVSRPAAPAAEPAPWLVEHAK 92

Query: 674 SSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALL 733
             +      +     P  P        +   +  +            P    P       
Sbjct: 93  RLTAQREQLVARAAAPAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVP------A 146

Query: 734 SAPPHPSPTSRSSQP 748
            A    +   ++   
Sbjct: 147 DAAAAVADAVKARIE 161

Length = 484

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.6 bits (100), Expect = 0.001
 Identities = 21/91 (23%), Positives = 27/91 (29%), Gaps = 11/91 (12%)

Query: 720 PPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAP 779
           P PA  P+  K    AP    P          P  P   P   P P+S           P
Sbjct: 382 PSPAGSPDVKK---KAPEPDLPQPDRHPGPAKPEAPGARPAELPSPAS--------APTP 430

Query: 780 TSQPAVPPPPPPLPKSCSTSIPMAPPPPPSI 810
             QP V    P  P   +++        P +
Sbjct: 431 EQQPPVARSAPLPPSPQASAPRNVASGKPGV 461

Length = 620

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.2 bits (99), Expect = 0.001
 Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 6/62 (9%)

Query: 502 PSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPS--PPPPPPPPLPSSTNNSFLSP 559
           P P  PQ      P  P  +P +    +P P SAP P   PP     PLP S      S 
Sbjct: 395 PEPDLPQPDRHPGPAKP-EAPGARPAELPSPASAPTPEQQPPVARSAPLPPSPQA---SA 450

Query: 560 PP 561
           P 
Sbjct: 451 PR 452

Length = 620

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 42.2 bits (99), Expect = 0.001
 Identities = 29/98 (29%), Positives = 31/98 (31%), Gaps = 13/98 (13%)

Query: 629 IVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPP 688
            +P    PPPP S               G PP      PS S    + LP  S     P 
Sbjct: 181 NIPGAIQPPPPSSL-------------PGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPG 227

Query: 689 PPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGP 726
           P P  PS    S   P          PPP PPP    P
Sbjct: 228 PSPAQPSAPPASIPAPPIPPVIQYVAPPPVPPPQPIIP 265

Length = 582

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 41.8 bits (98), Expect = 0.001
 Identities = 27/97 (27%), Positives = 32/97 (32%), Gaps = 12/97 (12%)

Query: 729 SKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPP 788
           + A   A   P+  +    P   PP      P P  P             P   PA PP 
Sbjct: 24  AGASAVAIALPATANADPAPPPPPPSTAAAAPAPAAP------------PPPPPPAAPPA 71

Query: 789 PPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPP 825
           P P   + +   P A P  P       NAP PP P P
Sbjct: 72  PQPDDPNAAPPPPPADPNAPPPPPVDPNAPPPPAPEP 108

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 42.3 bits (99), Expect = 0.001
 Identities = 21/83 (25%), Positives = 27/83 (32%), Gaps = 5/83 (6%)

Query: 686 PPPPPPPPPSFSGRSSIVPSTTSK---GPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPT 742
           PP PP   P+     +   S   +    P P   P    PA  P       +  P   P 
Sbjct: 173 PPNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNP--AQQPQQQPQ 230

Query: 743 SRSSQPSFHPPPPPPPPPPPPPP 765
            +  QP+  P P  P   PP   
Sbjct: 231 QQPVQPAQQPTPQNPAQQPPQTE 253

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 42.3 bits (99), Expect = 0.001
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 3/96 (3%)

Query: 522 PASASGVIPLPMSAPPPSPPPPPPPPLP---SSTNNSFLSPPPPPPPLPSSTNNNFISPP 578
           PA  + ++      PP  P   P P LP   +S++       P P   P+  N       
Sbjct: 159 PAGGTYILASGTYIPPNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTV 218

Query: 579 PPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPA 614
             P   P    +     P++      P   PP    
Sbjct: 219 QNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQ 254

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 43.0 bits (101), Expect = 0.001
 Identities = 23/54 (42%), Positives = 24/54 (44%), Gaps = 13/54 (24%)

Query: 658 PP--PPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSK 709
           PP  PPPPPPPP F        PS      PPPPPPP  +   RS    S    
Sbjct: 5   PPGNPPPPPPPPGFEP------PS-----QPPPPPPPGVNVKKRSRKQLSIVGD 47

Length = 2365

>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein

 Score = 43.0 bits (101), Expect = 0.001
 Identities = 87/417 (20%), Positives = 107/417 (25%), Gaps = 88/417 (21%)

Query: 530 PLPMSAPPPSPPPPP---PPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPC 586
           P       PS        PP L S ++     P     P+         SP         
Sbjct: 189 PPDSLVLLPSSQHSVQNFPPSLMSKSSAMQQKPTAYVRPMDGQDQAPDESPELKSSIEES 248

Query: 587 FSSKDFSPMPSETSRGPPPPP--------PPPPPPAFSGKDSSAVRSTSSIVPPPPPPPP 638
           +  + F     E      P          P  P       D S V      +    PPP 
Sbjct: 249 YGQQSFGKTMDEL---KSPAKAKLTKLKIPSQPVEQSYSGDVSCVEEILKEMTHSWPPP- 304

Query: 639 PPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGS--SSLPSTSSIGSPPPPPPPPPSF 696
                          ++I  P    P    F  K S   S  + +     P       S 
Sbjct: 305 --------------LTAIHTPGKTEPSKFPFPTKDSQHVSPGTQNQKQYDPSSKTSTNSQ 350

Query: 697 SGRS-------------SIVPSTTSKGPPPPPPPPP----PPPAA----GPNSSKALLSA 735
           SG S             S     T K P    PP      P PAA      +SS    S+
Sbjct: 351 SGTSMLEDDLKLSSSEDSDEEQATEKPPSRNTPPSAPSSNPEPAASSSGSSSSSSGSESS 410

Query: 736 PPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQL----APTSQPAVPPP--- 788
               S +  SS  S    PP    P P PPS     TNK QL       +   V P    
Sbjct: 411 SGSDSESESSSSDSEENEPPRTASPEPEPPS-----TNKWQLDNWLNKVNPHKVSPAESV 465

Query: 789 --PPPL----------PKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVL 836
              PP+            S S   P +  PPP    K    PR     P  G  +  +  
Sbjct: 466 SSNPPIKQPMEKEGKVKSSGSQYHPESKEPPPKSSSKEKRRPRTAQKGPESGRGKQKSPA 525

Query: 837 PPPPPAPKLPTAPSPPSRGVMP------------SPPPPPGVKSSSVPPPPLPSVGK 881
               P  +       P +                S P      SS   PP  P    
Sbjct: 526 QSEAPPQRRTVGKKQPKKPEKASAGDERTGLRPESEPGTLPYGSSVQTPPDRPKAAT 582

This family consists of AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental retardation syndrome) nuclear proteins. These proteins have been linked to human diseases such as acute lymphoblastic leukaemia and mental retardation. The family also contains a Drosophila AF4 protein homologue Lilliputian which contains an AT-hook domain. Lilliputian represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila. Length = 1154

>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27

 Score = 42.5 bits (100), Expect = 0.001
 Identities = 28/207 (13%), Positives = 45/207 (21%), Gaps = 11/207 (5%)

Query: 612 PPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSG 671
            P  +             V P   P   P+  GK  S+ P  S + P         +   
Sbjct: 128 GPITNPNVKRRTGVGLPPVAPAASPALKPTANGKRPSSKPPKSIMSPEVKVKSAKKTQDT 187

Query: 672 KGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKA 731
              ++   T    +         +   +S+I+ S   K             +     S+ 
Sbjct: 188 SKETTTEKTEG-KTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKEASESTVKEESEE 246

Query: 732 LLSAPP----HPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITN------KLQLAPTS 781
                       S              P P            +         K  +    
Sbjct: 247 ESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDED 306

Query: 782 QPAVPPPPPPLPKSCSTSIPMAPPPPP 808
           +       P  P     S    PPP P
Sbjct: 307 EDEEMEIVPESPVEEEESEEPEPPPLP 333

This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterized by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif. Length = 427

>gnl|CDD|165468 PHA03201, PHA03201, uracil DNA glycosylase; Provisional

 Score = 42.2 bits (99), Expect = 0.001
 Identities = 31/96 (32%), Positives = 36/96 (37%), Gaps = 8/96 (8%)

Query: 744 RSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMA 803
           R+   S  PP  P PP P PP S           +P   P  PP P   P     + P A
Sbjct: 3   RARSRSPSPPRRPSPPRPTPPRSPDA--------SPEETPPSPPGPGAEPPPGRAAGPAA 54

Query: 804 PPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPP 839
           P   P      +      PP PPLG   + A  PPP
Sbjct: 55  PRRRPRGCPAGVTFSSSAPPRPPLGLDDAPAATPPP 90

Length = 318

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 30/134 (22%), Positives = 37/134 (27%), Gaps = 3/134 (2%)

Query: 502 PSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPPP 561
           P+P+ P S+    P       A      P+    P P P P PP   P         P P
Sbjct: 42  PAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKP 101

Query: 562 PPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSS 621
            P P P         P     P      +  SP  +     P                SS
Sbjct: 102 KPKPKPKPVKKVEEQPKREVKPV---EPRPASPFENTAPARPTSSTATAAASKPVTSVSS 158

Query: 622 AVRSTSSIVPPPPP 635
             R+ S   P  P 
Sbjct: 159 GPRALSRNQPQYPA 172

Length = 246

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 42.8 bits (100), Expect = 0.001
 Identities = 39/153 (25%), Positives = 51/153 (33%), Gaps = 3/153 (1%)

Query: 722 PAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTS 781
           P  GP +S     AP          + S       P     P  +  G++  K   A   
Sbjct: 510 PPEGPEASGLPPKAPGDKEGEEGEHEDS--KESDEPKEGGKPGETKEGEVGKKPGPAKEH 567

Query: 782 QPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSG-AVLPPPP 840
           +P+  P     P+          P  P    +P +A RP  P  P  P        P  P
Sbjct: 568 KPSKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRP 627

Query: 841 PAPKLPTAPSPPSRGVMPSPPPPPGVKSSSVPP 873
            +PK P  P PP R   P  P  P +  S  PP
Sbjct: 628 ESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPP 660

Length = 943

>gnl|CDD|220749 pfam10428, SOG2, RAM signalling pathway protein

 Score = 42.4 bits (100), Expect = 0.001
 Identities = 22/116 (18%), Positives = 33/116 (28%), Gaps = 13/116 (11%)

Query: 700 SSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHP--------SPTSRSSQPSFH 751
           SS+ P    +        P    A     S  L      P        SP S S+  +  
Sbjct: 146 SSLGPPLQHRKRDAVTASPSSMIARNTPISDRLRPRSVTPTRGRRPSSSPRSLSNPTTLE 205

Query: 752 PPPPPPPPPPPPPPSSLGK-----ITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPM 802
            P         PPP S G      +++   L+  S  A P        + ++    
Sbjct: 206 SPSNLQVTTDVPPPYSNGTSRSSTMSSSANLSIISSLATPRSGESFRSTPTSGSSS 261

SOG2 proteins in Saccharomyces cerevisiae are involved in cell separation and cytokinesis. Length = 419

>gnl|CDD|220749 pfam10428, SOG2, RAM signalling pathway protein

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 24/127 (18%), Positives = 36/127 (28%), Gaps = 3/127 (2%)

Query: 511 APTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPSST 570
           +  PPL      A  +    +     P S    P    P+       SP     P    +
Sbjct: 147 SLGPPLQHRKRDAVTASPSSMIARNTPISDRLRPRSVTPTRGRRPSSSPRSLSNPTTLES 206

Query: 571 NNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIV 630
            +N       PPP    +S+  +   S           P    +F    S+    +SSI 
Sbjct: 207 PSNLQVTTDVPPPYSNGTSRSSTMSSSANLSIISSLATPRSGESFR---STPTSGSSSIN 263

Query: 631 PPPPPPP 637
           P      
Sbjct: 264 PVSGLDE 270

SOG2 proteins in Saccharomyces cerevisiae are involved in cell separation and cytokinesis. Length = 419

>gnl|CDD|222010 pfam13254, DUF4045, Domain of unknown function (DUF4045)

 Score = 42.1 bits (99), Expect = 0.001
 Identities = 63/298 (21%), Positives = 95/298 (31%), Gaps = 31/298 (10%)

Query: 503 SPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPPPP 562
           S      +   P   P SS + A+ V        P +PP   P       +  F+ P  P
Sbjct: 59  SGRPASRLNREPSSRPGSSHSEATIVRQAKEGERPATPPEARP-------DEGFVRPSLP 111

Query: 563 PPPL--PSSTNNNFISPPP---PPPPPPCFSSKDFSPMPS---ETSRGPPPPP---PPPP 611
             P    +S +N+     P   PP P      + +SP  +   E++   P  P   P PP
Sbjct: 112 SHPRSRSASVSNSKDGDRPSDLPPSPSKTMDPRRWSPTKATWLESALNKPESPKHKPQPP 171

Query: 612 PPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSG 671
                 KD S +R + + V                    P      PPP      PS SG
Sbjct: 172 QQPEWKKDLSRLRQSRASVDLGRTNSFKE--------VTPVGLMRTPPPGSHSKSPSKSG 223

Query: 672 KGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKA 731
                LPS+       P  P   + S  +     +++  P     P  P  A   ++++ 
Sbjct: 224 --IPDLPSSRDSEKTKPEKPQQETSSMDTE---KSSAPKPRETLDPKSPEKAPPIDTTEE 278

Query: 732 LLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPP 789
            L +P      S  +      P    P P    P  L       +   + +P    PP
Sbjct: 279 ELKSPEASPKESEEASARKRSPSLLSPSPKAESPKPLASPGKSPRDPLSPRPKPQSPP 336

This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length. Length = 414

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 42.5 bits (100), Expect = 0.002
 Identities = 28/170 (16%), Positives = 37/170 (21%), Gaps = 11/170 (6%)

Query: 558 SPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSG 617
                PP    +            P     S           +         P  P  + 
Sbjct: 783 GAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESSGPARPPGAA 842

Query: 618 KDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSL 677
                 RS+ S    P          GK     P        P    PP + +    +  
Sbjct: 843 ARPPPARSSESSKSKPAAAGGRAR--GKNGRRRPRPPEPRARPGAAAPPKAAAAAPPAGA 900

Query: 678 PSTSSIGSPPPPPPPPPSFSGRSSIVPSTTS---KGPPPPPPPPPPPPAA 724
           P      +P P P P           P       + PP     P P  AA
Sbjct: 901 P------APRPRPAPRVKLGPMPPGGPDPRGGFRRVPPGDLHTPAPSAAA 944

Length = 1352

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.3 bits (100), Expect = 0.002
 Identities = 28/82 (34%), Positives = 32/82 (39%), Gaps = 8/82 (9%)

Query: 797 STSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGV 856
           S S       PP     P  +P PP P PPL    + A  P PPP P  PTA    S   
Sbjct: 514 SGSASNTAKTPP----PPQKSPPPPAPTPPLPQPTATAPPPTPPPPP--PTATQASSNA- 566

Query: 857 MPSPPPPPGVKSSSVPPPPLPS 878
            P+  P        +P  P PS
Sbjct: 567 -PAQIPADSSPPPPIPEEPTPS 587

Length = 620

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score = 41.8 bits (98), Expect = 0.002
 Identities = 34/173 (19%), Positives = 52/173 (30%), Gaps = 16/173 (9%)

Query: 501 PPSPSSPQSIAPTPPLPPHSSPASA-SGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSP 559
            PSP S  ++    P    +      S         PP SP P  P  +  S +++   P
Sbjct: 413 VPSPGSASNVPEVEPAQVEAKKTRPLSPYARYEDLKPPTSPSPTAPTGVSPSVSSTSSVP 472

Query: 560 PPPPPPLPSSTNNNFISPPPPPPPPPCFSSKD-----FSPMPSETSRGPPPPPPPPPPPA 614
             P     ++  +    PP    P   ++  D      SP P+       P         
Sbjct: 473 AVPDTAPATAATDAAAPPPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKV 532

Query: 615 FSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPP 667
            +    +A+        P P P  P + Y            + PP  P P P 
Sbjct: 533 GNSAPPTALADEQHHAQPKPRPLSPYTMY----------EDLKPPTSPTPSPV 575

Length = 576

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 41.8 bits (99), Expect = 0.002
 Identities = 13/92 (14%), Positives = 26/92 (28%), Gaps = 5/92 (5%)

Query: 587 FSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKG 646
           F+        + T+           P A     + A  + +      P  PP P+     
Sbjct: 33  FADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPA----- 87

Query: 647 SSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLP 678
           ++   + +   PP       P+ +       P
Sbjct: 88  AAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.1 bits (99), Expect = 0.002
 Identities = 14/72 (19%), Positives = 21/72 (29%), Gaps = 1/72 (1%)

Query: 495 GNPPCFPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPP-PPPPPLPSSTN 553
              P    + S   S +     P     A+     P  +S  PP+  P  PP   P +  
Sbjct: 389 APQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAVR 448

Query: 554 NSFLSPPPPPPP 565
            +        P 
Sbjct: 449 PAQFKEEKKIPV 460

Length = 614

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.0 bits (99), Expect = 0.002
 Identities = 22/72 (30%), Positives = 25/72 (34%), Gaps = 8/72 (11%)

Query: 803 APPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPP 862
           AP PP +    P   P  P  PPP       A  P PP AP  P A  P      P+   
Sbjct: 381 APAPPSAAWGAP--TPAAPAAPPP------AAAPPVPPAAPARPAAARPAPAPAPPAAAA 432

Query: 863 PPGVKSSSVPPP 874
           PP   +      
Sbjct: 433 PPARSADPAAAA 444

Length = 576

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.7 bits (98), Expect = 0.002
 Identities = 23/93 (24%), Positives = 29/93 (31%), Gaps = 27/93 (29%)

Query: 646 GSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPS 705
           G+   PS +   P P  P  PP                 +PP PP  P   +        
Sbjct: 380 GAPAPPSAAWGAPTPAAPAAPPP--------------AAAPPVPPAAPARPAAA------ 419

Query: 706 TTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPH 738
                   P P P PP AA P +  A  +A   
Sbjct: 420 -------RPAPAPAPPAAAAPPARSADPAAAAS 445

Length = 576

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 42.3 bits (99), Expect = 0.002
 Identities = 19/41 (46%), Positives = 19/41 (46%), Gaps = 16/41 (39%)

Query: 602 GPPP--PPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPP 640
             PP  PPPPPPPP F               PP  PPPPPP
Sbjct: 3   SLPPGNPPPPPPPPGFE--------------PPSQPPPPPP 29

Length = 2365

>gnl|CDD|217453 pfam03251, Tymo_45kd_70kd, Tymovirus 45/70Kd protein

 Score = 41.6 bits (98), Expect = 0.002
 Identities = 46/223 (20%), Positives = 65/223 (29%), Gaps = 11/223 (4%)

Query: 545 PPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPP 604
           P PL   T      P PP P    S ++     P P        +       +     PP
Sbjct: 243 PSPLHPHTTR----PSPPRPAFSRSPSSPLSPLPRPSTRRGLLPNPRLPR--ASRGHLPP 296

Query: 605 PPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPP 664
           P    PP P    +    + S+    P   P     +   +  + +  + S+G  P    
Sbjct: 297 PTSSAPPRPNGGLRRPLHLHSSRPNSPNLRPRRIRKNSLQQTRARLGHSKSLGQSPNLRS 356

Query: 665 PPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAA 724
                  K    L           P            +  S +   P PP   P    A+
Sbjct: 357 SQLPPPTKRRLRLLPVPPPKVQALPLTALAP-----LVRHSPSIPLPHPPSALPSHVGAS 411

Query: 725 GPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSS 767
                +   S  P P  +S S  PS     P  PPPP  PP+ 
Sbjct: 412 SSKHHRLPPSVLPGPRLSSPSPSPSLPTRRPGTPPPPASPPTP 454

Tymoviruses are single stranded RNA viruses. This family includes a protein of unknown function that has been named based on its molecular weight. Tymoviruses such as the ononis yellow mosaic tymovirus encode only three proteins. Of these two are overlapping this protein overlaps a larger ORF that is thought to be the polymerase. Length = 458

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 41.6 bits (97), Expect = 0.003
 Identities = 49/265 (18%), Positives = 69/265 (26%), Gaps = 17/265 (6%)

Query: 496 NPPCFPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNS 555
            P     +   P   AP    PP  +P         P  A  P+       P P++    
Sbjct: 675 QPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARP-PAAAPGR 733

Query: 556 FLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAF 615
              P   P            + PP   P         +  P+     P P PPP  PPA 
Sbjct: 734 ARPPAAAPGRARPPAAAPGRARPPAAAPGR-------ARPPAAAPGAPTPQPPPQAPPA- 785

Query: 616 SGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSS 675
                   R   +  P PPP   P S      +                      G+ S 
Sbjct: 786 -----PQQRPRGAPTPQPPPQAGPTSMQLMPRAAPGQQGPTKQILRQLLTGGVKRGRPSL 840

Query: 676 SLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSA 735
             P+     +   P P P S +    +         PP   P       G   + A  + 
Sbjct: 841 KKPAALERQAAAGPTPSPGSGTSDKIVQAPVFY---PPVLQPIQVMRQLGSVRAAAASTV 897

Query: 736 PPHPSPTSRSSQPSFHPPPPPPPPP 760
              P+  +   +      P   PP 
Sbjct: 898 TQAPTEYTGERRGVGPMHPTDIPPS 922

Length = 991

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.1 bits (97), Expect = 0.003
 Identities = 19/78 (24%), Positives = 26/78 (33%)

Query: 732 LLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPP 791
           L SA       + +       P P PPP P  P +   K        P ++ + P P P 
Sbjct: 360 LPSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPA 419

Query: 792 LPKSCSTSIPMAPPPPPS 809
            P   S + P      P 
Sbjct: 420 EPTEPSPTPPANAANAPP 437

Length = 620

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 41.4 bits (98), Expect = 0.003
 Identities = 10/90 (11%), Positives = 22/90 (24%), Gaps = 7/90 (7%)

Query: 561 PPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDS 620
           P     P++      +    P   P       +          PP    P  P      +
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAP-------AAKAPAAPAPAPPAAAAPAAPPKPAAAA 90

Query: 621 SAVRSTSSIVPPPPPPPPPPSFYGKGSSTM 650
           +A  + ++         P  +      + +
Sbjct: 91  AAAAAPAAPPAAAAAAAPAAAAVEDEVTPL 120

Length = 1228

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 41.1 bits (97), Expect = 0.003
 Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 4/99 (4%)

Query: 692 PPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFH 751
           PP + +  ++  P   +      P  P   PA         L+A       +R++ P   
Sbjct: 53  PPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQ-LVARAAAP--- 108

Query: 752 PPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPP 790
             P    P  P   ++      +L  A  + P    P  
Sbjct: 109 AAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPAD 147

Length = 484

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 40.4 bits (95), Expect = 0.003
 Identities = 25/140 (17%), Positives = 33/140 (23%), Gaps = 18/140 (12%)

Query: 501 PPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPP 560
             +P++ Q      P P H                 P   PP    P   +   +  +P 
Sbjct: 72  NHAPANAQEHEAARPSPQHQYQP----PYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQ 127

Query: 561 PPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDS 620
           P   P            P P  P     S   +P P      P P      P        
Sbjct: 128 PVQQPA---------YQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAE-----P 173

Query: 621 SAVRSTSSIVPPPPPPPPPP 640
            A      +  P P    P 
Sbjct: 174 VAAPQPEPVAEPAPVMDKPK 193

Length = 333

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 40.6 bits (95), Expect = 0.003
 Identities = 26/68 (38%), Positives = 28/68 (41%)

Query: 787 PPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLP 846
           PPPPP   + +   P APPPPP     P   P  P   PP  PA   A  PPP      P
Sbjct: 43  PPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNAPP 102

Query: 847 TAPSPPSR 854
                P R
Sbjct: 103 PPAPEPGR 110

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 40.6 bits (95), Expect = 0.003
 Identities = 37/121 (30%), Positives = 46/121 (38%), Gaps = 25/121 (20%)

Query: 511 APTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPSST 570
           A    LP  ++   A    P   +A  P+P  PPPPP P        + PP P P     
Sbjct: 28  AVAIALPATANADPAPPPPPPSTAAAAPAPAAPPPPPPP--------AAPPAPQPDD--- 76

Query: 571 NNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIV 630
                 P   PPPPP   +    P        P  P  PPPP    G+  +AV   S +V
Sbjct: 77  ------PNAAPPPPPADPNAPPPP--------PVDPNAPPPPAPEPGRIDNAVGGFSYVV 122

Query: 631 P 631
           P
Sbjct: 123 P 123

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.3 bits (97), Expect = 0.003
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 11/74 (14%)

Query: 675 SSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLS 734
           +  P +++ G+P P  P  P             +  PP PP  P  P AA P  + A  +
Sbjct: 381 APAPPSAAWGAPTPAAPAAP-----------PPAAAPPVPPAAPARPAAARPAPAPAPPA 429

Query: 735 APPHPSPTSRSSQP 748
           A   P+ ++  +  
Sbjct: 430 AAAPPARSADPAAA 443

Length = 576

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.0 bits (97), Expect = 0.003
 Identities = 16/103 (15%), Positives = 23/103 (22%), Gaps = 28/103 (27%)

Query: 709 KGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSL 768
           +GPP P      PP  G        +     +  +  +  +      P            
Sbjct: 389 EGPPSPGGGGGGPPGGGG-------APGAPAAAAAPGAAAAAPAAGGPAAA--------- 432

Query: 769 GKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIG 811
                 L   P +  A   PP P         P       S  
Sbjct: 433 ------LAAVPDAAAAAAAPPAPAAA------PQPAVRLNSFE 463

Length = 598

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 41.5 bits (97), Expect = 0.003
 Identities = 21/48 (43%), Positives = 23/48 (47%), Gaps = 20/48 (41%)

Query: 675 SSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPP 722
           +SLP     G+PPPPPPPP                G  PP  PPPPPP
Sbjct: 2   ASLPP----GNPPPPPPPP----------------GFEPPSQPPPPPP 29

Length = 2365

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 41.1 bits (96), Expect = 0.003
 Identities = 21/52 (40%), Positives = 23/52 (44%), Gaps = 22/52 (42%)

Query: 533 MSAPPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPP 584
           M++ PP  PPPPPPP            P   PP          S PPPPPPP
Sbjct: 1   MASLPPGNPPPPPPP------------PGFEPP----------SQPPPPPPP 30

Length = 2365

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 40.8 bits (96), Expect = 0.003
 Identities = 14/63 (22%), Positives = 18/63 (28%)

Query: 705 STTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPP 764
           S    G  PP   P    AA    +         P+P   ++     P    PP P P  
Sbjct: 116 SEIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAA 175

Query: 765 PSS 767
              
Sbjct: 176 KPP 178

Length = 418

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 32/131 (24%), Positives = 42/131 (32%), Gaps = 10/131 (7%)

Query: 509 SIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPS 568
           S+     LP  + P S + V P  +  P    PPP P   P          P PP   P 
Sbjct: 34  SVHQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPI---PEPPKEAPV 90

Query: 569 STNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSS 628
                   P P P P P        P+     +      P  P PA   ++++  R TSS
Sbjct: 91  VIPKPEPKPKPKPKPKP-------KPVKKVEEQPKREVKPVEPRPASPFENTAPARPTSS 143

Query: 629 IVPPPPPPPPP 639
                   P  
Sbjct: 144 TATAAASKPVT 154

Length = 246

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 41.2 bits (96), Expect = 0.003
 Identities = 80/396 (20%), Positives = 103/396 (26%), Gaps = 55/396 (13%)

Query: 486 HQQSLVLTEGNPPCFPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPP 545
           H+ S + T    P FP  P  P+   P  P  P             P SA  P+ P  P 
Sbjct: 567 HKPSKIPTLSKKPEFPKDPKHPKD--PEEPKKPKR-----------PRSAQRPTRPKSPK 613

Query: 546 PPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPP 605
            P       S   P  P  P             PPPP  P    +   P   ++ + P  
Sbjct: 614 LPELLDIPKSPKRPESPKSP-----------KRPPPPQRPSSPERPEGPKIIKSPKPPKS 662

Query: 606 PPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPP 665
           P PP  P          + + +             SF      T+P T       P P P
Sbjct: 663 PKPPFDPKFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRPLP 722

Query: 666 PPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVP--STTSKGPPPPPPPPPPPPA 723
           P          LP        P   P            P     +     P   P P   
Sbjct: 723 P---------KLPRDEEFPFEPIGDPDAEQPDDIEFFTPPEEERTFFHETPADTPLPDIL 773

Query: 724 AGPNSSKALLSAPPHP-SPTSRSSQPSFHPPPPPPPPPPPPPP----SSLGKITNKLQLA 778
           A     + + +    P     R   PS H   PP   P  P        L   T  L+  
Sbjct: 774 AEEFKEEDIHAETGEPDEAMKRPDSPSEHEDKPPGDHPSLPKKRHRLDGLALSTTDLESD 833

Query: 779 PTSQPAVPPPPP-PLPKSCS----TSIPMAPPPPPSI--------GCKPINAPRPPPPPP 825
                         L +S S    T++  A               G +  +    PP   
Sbjct: 834 AGRIAKDASGKIVKLKRSKSFDDLTTVEEAEEMGAEARKIVVDDDGTEADDEDTHPPEEK 893

Query: 826 PLGPARS--GAVLPPPPPAPKLPTAPSPPSRGVMPS 859
                R       P  P  P  P  P  P    +PS
Sbjct: 894 HKSEVRRRRPPKKPSKPKKPSKPKKPKKPDSAFIPS 929

Length = 943

>gnl|CDD|220749 pfam10428, SOG2, RAM signalling pathway protein

 Score = 41.3 bits (97), Expect = 0.003
 Identities = 23/125 (18%), Positives = 34/125 (27%), Gaps = 2/125 (1%)

Query: 720 PPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAP 779
                  +  +  ++A P       +       P    P     P SS   ++N   L  
Sbjct: 147 SLGPPLQHRKRDAVTASPSSMIARNTPISDRLRPRSVTPTRGRRPSSSPRSLSNPTTLES 206

Query: 780 TSQPAVPPP-PPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPP 838
            S   V    PPP     S S  M+     SI       PR          + S ++ P 
Sbjct: 207 PSNLQVTTDVPPPYSNGTSRSSTMSSSANLSIISSLA-TPRSGESFRSTPTSGSSSINPV 265

Query: 839 PPPAP 843
                
Sbjct: 266 SGLDE 270

SOG2 proteins in Saccharomyces cerevisiae are involved in cell separation and cytokinesis. Length = 419

>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

 Score = 41.3 bits (97), Expect = 0.003
 Identities = 15/90 (16%), Positives = 24/90 (26%), Gaps = 2/90 (2%)

Query: 702 IVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPP 761
           I+         PP             S+ A  +A  +    S +                
Sbjct: 73  ILEEGNDATAAPPAKSGEEKEETPAASAAAAPTAAANRPSLSPA--ARRLAKEHGIDLSA 130

Query: 762 PPPPSSLGKITNKLQLAPTSQPAVPPPPPP 791
            P     G++T +  +  T  PA    P P
Sbjct: 131 VPGTGVTGRVTKEDIIKKTEAPASAQQPAP 160

This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase [Energy metabolism, TCA cycle]. Length = 403

>gnl|CDD|191511 pfam06409, NPIP, Nuclear pore complex interacting protein (NPIP)

 Score = 40.9 bits (95), Expect = 0.003
 Identities = 31/96 (32%), Positives = 36/96 (37%), Gaps = 9/96 (9%)

Query: 761 PPPPPSSLGKITNKLQL-APTSQPAVPPPPPPLPKSCSTSIPMAP----PPPPSIGCKPI 815
           PPPP      I N L L  P      P PP  LP +       A     P PPS      
Sbjct: 247 PPPPTQQHSIIDNSLSLKTPPECLLTPLPPSALPSADDNLKTPAECLLRPLPPSADDNIK 306

Query: 816 NAPRPPPPPPPLGPARSG----AVLPPPPPAPKLPT 847
             P    PPPPL P+        +L P PP+   P+
Sbjct: 307 ECPLALKPPPPLPPSVDDNLKECLLAPLPPSALPPS 342

This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans. Length = 350

>gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane glycoprotein G

 Score = 40.8 bits (95), Expect = 0.003
 Identities = 34/172 (19%), Positives = 53/172 (30%), Gaps = 16/172 (9%)

Query: 649 TMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTS 708
           T PS  +    P       + + +  SS     + G+     P P +    S   PS + 
Sbjct: 188 TYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTSSNPEPQTEPPPSQRGPSGSP 247

Query: 709 KGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSL 768
           + PP            G   ++        P  TS    P          PPP       
Sbjct: 248 QHPPSTTSQDQSTTGDGQEHTQ----RRKTPPATSNRRSPHST-----ATPPPTTKRQET 298

Query: 769 GKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRP 820
           G+ T +    PT+       P   P S    +   P     + CK ++ P+P
Sbjct: 299 GRPTPR----PTATTQSGSSP---PHSSPPGVQANPTTQNLVDCKELDPPKP 343

Length = 408

>gnl|CDD|216263 pfam01044, Vinculin, Vinculin family

 Score = 41.3 bits (97), Expect = 0.003
 Identities = 19/74 (25%), Positives = 24/74 (32%), Gaps = 12/74 (16%)

Query: 535 APPPSPP-----PPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSS 589
            P          PP  P           + P PPPP+          PPP PPPPP    
Sbjct: 606 RPIRQAVLMNRSPPELPTDSEFEREDEPADPRPPPPVE-------TEPPPRPPPPPETDR 658

Query: 590 KDFSPMPSETSRGP 603
           ++   +P E     
Sbjct: 659 EEMRRLPPEEKAKI 672

Length = 850

>gnl|CDD|221745 pfam12737, Mating_C, C-terminal domain of homeodomain 1

 Score = 40.6 bits (95), Expect = 0.003
 Identities = 52/299 (17%), Positives = 77/299 (25%), Gaps = 17/299 (5%)

Query: 596 PSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSS 655
           P+ +S     P P     +         +   S  P               S ++ S+SS
Sbjct: 78  PALSSERLLSPSPSVLDLSPVLASPQTGKRRRSSSPSDDEDEAERPSKRPRSDSISSSSS 137

Query: 656 IGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGP---- 711
              PP    P P+ S +   S  S + + +P   PP  P+ +  S       S G     
Sbjct: 138 PAKPPEACLPSPAASTQDELSEASAAPLPTPSLSPPHTPTDTAPSGKRKRRLSDGFQLPA 197

Query: 712 PPPPPPPPPPPAAG---PNSSKALLSAPPHPSPTSRSSQPSFHPPPPP----PPPPPPPP 764
           P  P     P       P  +          + +S  S       PPP     P    P 
Sbjct: 198 PKRPQTSSRPQTVSDPLPLHATTDWDTWFQATVSSSPSLLLTGDIPPPVSVFAPDDSTPL 257

Query: 765 PSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIP-----MAPPPPPSIGCKPINAPR 819
             SL        L P     +P P      S + ++P             +     N   
Sbjct: 258 DISLFNFPLIPLLPP-EALDLPAPTAVSSSSSTFAVPALTSSSVDQSATPLDQGFSNFGS 316

Query: 820 PPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPPPGVKSSSVPPPPLPS 878
                P      S     P   +        P       SP     + +   P P    
Sbjct: 317 NMYSEPLNPTNDSLLYGLPSSSSLYANRTIFPAWASTSVSPLDFSTLFNQPSPSPMASQ 375

Mating in fungi is controlled by the loci that determine the mating type of an individual, and only individuals with differing mating types can mate. Basidiomycete fungi have evolved a unique mating system, termed tetrapolar or bifactorial incompatibility, in which mating type is determined by two unlinked loci; compatibility at both loci is required for mating to occur. The multi-allelic tetrapolar mating system is considered to be a novel innovation that could have only evolved once, and is thus unique to the mushroom fungi. This domain is C-terminal to the homeodomain transcription factor region. Length = 418

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.9 bits (96), Expect = 0.004
 Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 4/76 (5%)

Query: 817 APRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPPPGVKSSSVPPPPL 876
           A +P        PA       P   AP    A +P ++      P      ++S P  P 
Sbjct: 363 AFKPAAAAEAAAPAEKKTPARPEAAAP----AAAPVAQAAAAPAPAAAPAAAASAPAAPP 418

Query: 877 PSVGKGKVTSGPASHG 892
            +     V +  A+  
Sbjct: 419 AAAPPAPVAAPAAAAP 434

Length = 618

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.7 bits (96), Expect = 0.004
 Identities = 32/107 (29%), Positives = 41/107 (38%), Gaps = 27/107 (25%)

Query: 745 SSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAP 804
           +S  +  PPPP   PPPP P   L + T           A PP PPP P + + +   AP
Sbjct: 517 ASNTAKTPPPPQKSPPPPAPTPPLPQPTA---------TAPPPTPPPPPPTATQASSNAP 567

Query: 805 PPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSP 851
              P        A   PPPP P            P P+P   ++P  
Sbjct: 568 AQIP--------ADSSPPPPIP----------EEPTPSPTKDSSPEE 596

Length = 620

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 40.7 bits (96), Expect = 0.004
 Identities = 22/106 (20%), Positives = 30/106 (28%), Gaps = 9/106 (8%)

Query: 766 SSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPR------ 819
           S L  +      AP +    PP   P   S   +    P P      K + A R      
Sbjct: 46  SDLAALAPPAAAAPAA-AQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVAR 104

Query: 820 --PPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPP 863
              P  P    PA           A +L  A +   R  +P+    
Sbjct: 105 AAAPAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAA 150

Length = 484

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 40.4 bits (95), Expect = 0.004
 Identities = 28/146 (19%), Positives = 39/146 (26%), Gaps = 18/146 (12%)

Query: 740 SPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTS 799
                 +    H    P P     PP              ++QP  P   PP  +     
Sbjct: 70  RVNHAPANAQEHEAARPSPQHQYQPPY------------ASAQPRQPVQQPPEAQVPPQH 117

Query: 800 IPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPS 859
            P   P  P+       A +P P  P   P          P    + +AP P  +   P+
Sbjct: 118 AP--RPAQPAPQPVQQPAYQPQPEQPLQQPVSP----QVAPAPQPVHSAPQPAQQAFQPA 171

Query: 860 PPPPPGVKSSSVPPPPLPSVGKGKVT 885
            P           P P+    K K  
Sbjct: 172 EPVAAPQPEPVAEPAPVMDKPKRKEA 197

Length = 333

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.7 bits (95), Expect = 0.004
 Identities = 21/96 (21%), Positives = 27/96 (28%), Gaps = 21/96 (21%)

Query: 593 SPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPS 652
           SP  S   +   P P  P P                      P P  P   G   + +PS
Sbjct: 383 SPAGSPDVKKKAPEPDLPQPDR-------------------HPGPAKPEAPGARPAELPS 423

Query: 653 TSSIGPPP--PPPPPPPSFSGKGSSSLPSTSSIGSP 686
            +S   P   PP            +S P   + G P
Sbjct: 424 PASAPTPEQQPPVARSAPLPPSPQASAPRNVASGKP 459

Length = 620

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.9 bits (96), Expect = 0.004
 Identities = 19/106 (17%), Positives = 31/106 (29%), Gaps = 3/106 (2%)

Query: 479 ETVLSSLHQQSLVLTEGNPPCFPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPP 538
           E  L  L Q +    + +    P     P    P     P ++ A++    P   S+   
Sbjct: 353 ELTLIQLAQLTQKGDDASGGRGPKQHIKPVFTQPAAAPQPSAAAAASP--SP-SQSSAAA 409

Query: 539 SPPPPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPP 584
            P  P     P+ T  +    PP   P+   +       P      
Sbjct: 410 QPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEE 455

Length = 614

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.9 bits (96), Expect = 0.004
 Identities = 24/76 (31%), Positives = 28/76 (36%), Gaps = 13/76 (17%)

Query: 787 PPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLP 846
           P PP       T    A PPP +        P PP  P     AR       P PAP  P
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAA------PPVPPAAPARPAAAR-------PAPAPAPP 428

Query: 847 TAPSPPSRGVMPSPPP 862
            A +PP+R   P+   
Sbjct: 429 AAAAPPARSADPAAAA 444

Length = 576

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.5 bits (95), Expect = 0.004
 Identities = 22/97 (22%), Positives = 25/97 (25%), Gaps = 31/97 (31%)

Query: 743 SRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPM 802
             +  P       P P  P  PP +                A PP PP            
Sbjct: 379 RGAPAPPSAAWGAPTPAAPAAPPPA----------------AAPPVPPA----------- 411

Query: 803 APPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPP 839
              P      +P  AP PP    P  PARS       
Sbjct: 412 --APARPAAARPAPAPAPPAAAAP--PARSADPAAAA 444

Length = 576

>gnl|CDD|219916 pfam08580, KAR9, Yeast cortical protein KAR9

 Score = 41.0 bits (96), Expect = 0.004
 Identities = 52/252 (20%), Positives = 69/252 (27%), Gaps = 18/252 (7%)

Query: 427 SLDEAFDVFPEPLVDTKKLLLSNAGDSVTSLSKNEGPHDVILVSEPIDQVSNETVLSSLH 486
           SL    D        +K   + ++     S   N G       S P   V      S   
Sbjct: 356 SLKTVVDHVLRDSQSSKIQQIRDSISVSGSDYSNPGSSIDTPSSSPSSSVIMTPPDSGPG 415

Query: 487 QQSLVLTEGNPPCFPPSPSSP----QSIAPTPPLPPHSSPASASGVIPLPMSAPPPSP-- 540
                   G P        +      +I PT    P   P++ S       ++P  S   
Sbjct: 416 SNVSSRRVGTPGSKSDRVGAVLLRRMNIKPTLASIPDEKPSNISVFED-SETSPNSSTLL 474

Query: 541 --PPPPPPPLPSST--NNSFLSPPPP-PPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPM 595
             PPP      S    NN F +        +P  +    I   P P  P    S     +
Sbjct: 475 RDPPPKKCGEESGHLPNNPFFNKLKLTLSSIPPLSPRQSIITLPTPSRPASRISSLSLRL 534

Query: 596 PSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIV------PPPPPPPPPPSFYGKGSST 649
            S +     PPP P           S  RS S I           P   P   +   S+T
Sbjct: 535 GSYSGSIVSPPPYPTLVSRKGAAGLSFNRSVSDIEGERIGRYNLLPTRIPALPFKAESTT 594

Query: 650 MPSTSSIGPPPP 661
               SS  P P 
Sbjct: 595 SSRRSSSLPSPT 606

The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase. Length = 626

>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF; Provisional

 Score = 40.7 bits (95), Expect = 0.004
 Identities = 34/196 (17%), Positives = 55/196 (28%), Gaps = 22/196 (11%)

Query: 700 SSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPP 759
           +    +  +  P  P  P  P  A    S+ A +S     +  +     +     P   P
Sbjct: 62  TPATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVASAAEDMIAAMALRQPVSVP 121

Query: 760 PPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIP---------MAPPPPPSI 810
              P  + +   +     A     A      P  +   +++P          AP P   +
Sbjct: 122 RQAPAAAPVRAASIPSPAAQALAHAAAVRTAPRQEHALSAVPEQLFADFLTTAPVPRAPV 181

Query: 811 GCKPINAPRPPPPPPPLGPA------RSGAVLPPP------PPAPKLPTAPSPPSRGVMP 858
               + AP P P       A           L              LP A  PP   V P
Sbjct: 182 QAPVVAAPAPVPAIAAALAAHAAYAQDDDEQLDDDGFDLDDALPQILPPAALPPI-VVAP 240

Query: 859 SPPPPPGVKSSSVPPP 874
           + P      +++ P P
Sbjct: 241 AAPAALAAVAAAAPAP 256

Length = 559

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 40.5 bits (95), Expect = 0.004
 Identities = 25/169 (14%), Positives = 38/169 (22%), Gaps = 6/169 (3%)

Query: 524 SASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPP 583
           S SGV   P    P    PPP   LP        +      P      +N  +  P   P
Sbjct: 40  SQSGVAEFPWDPSPQ--APPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANP 97

Query: 584 PPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFY 643
           P  F+       P  T +  P    P   P    ++ +                     Y
Sbjct: 98  PATFALPAGPAGP--TIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQR--Y 153

Query: 644 GKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPP 692
           G  +S    +                    +    +  +          
Sbjct: 154 GAPASGQLPSQQQSAQKNDESQLQQQPNGETPPQQTDGAGDDESEALVR 202

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 40.4 bits (95), Expect = 0.004
 Identities = 23/91 (25%), Positives = 29/91 (31%), Gaps = 22/91 (24%)

Query: 684 GSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTS 743
           G+PP   P   +     +     T+   P    P P PPAA         S P  P+   
Sbjct: 122 GAPPAAAPAAAA-----AAKAEKTTPEKPKAAAPTPEPPAA---------SKPTPPAAAK 167

Query: 744 RSSQPSFHPPPPPPPPPPPPPPSSLGKITNK 774
                   PP P P   PPP P +       
Sbjct: 168 --------PPEPAPAAKPPPTPVARADPRET 190

Length = 418

>gnl|CDD|130706 TIGR01645, half-pint, poly-U binding splicing factor, half-pint family

 Score = 40.8 bits (95), Expect = 0.004
 Identities = 23/80 (28%), Positives = 30/80 (37%), Gaps = 8/80 (10%)

Query: 489 SLVLTEGNPPCFPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPP---PP 545
           SL    GN      +    +     PPLP  +      G + +P   PPP    P    P
Sbjct: 337 SLPTDIGNKAVVSSAKKEAE---EVPPLPQAAPAVVKPGPMEIPTPVPPPGLAIPSLVAP 393

Query: 546 PPL--PSSTNNSFLSPPPPP 563
           P L  P+  N SFL+ P   
Sbjct: 394 PGLVAPTEINPSFLASPRKK 413

The proteins represented by this model contain three RNA recognition motifs (rrm: pfam00076) and have been characterized as poly-pyrimidine tract binding proteins associated with RNA splicing factors. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA. Length = 612

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 40.8 bits (95), Expect = 0.004
 Identities = 49/181 (27%), Positives = 60/181 (33%), Gaps = 21/181 (11%)

Query: 690 PPPPPSFSGRSSIVP--STTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQ 747
           PP  P  SG     P      +G          P   G             P P ++  +
Sbjct: 510 PPEGPEASGLPPKAPGDKEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGP-AKEHK 568

Query: 748 PSFHPPPPPPPPPPPPPPSSLGKITNKLQLAP-TSQPAVPPPPPPLPKSCSTSIPMAPPP 806
           PS  P     P  P  P         K    P ++Q    P  P LP+     IP +P  
Sbjct: 569 PSKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPE--LLDIPKSPKR 626

Query: 807 PPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPPPGV 866
           P S    P +  RPPPP  P  P R        P  PK+  +P PP     P PP  P  
Sbjct: 627 PES----PKSPKRPPPPQRPSSPER--------PEGPKIIKSPKPPKS---PKPPFDPKF 671

Query: 867 K 867
           K
Sbjct: 672 K 672

Length = 943

>gnl|CDD|180523 PRK06305, PRK06305, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.5 bits (95), Expect = 0.004
 Identities = 12/65 (18%), Positives = 20/65 (30%)

Query: 534 SAPPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFS 593
           S           PP   S+N+      P P P+      + ++   P         +  S
Sbjct: 364 SPAFTQLRLESCPPQIKSSNSQQTVSSPQPQPVAKLEQGSLLTAASPQTKKETIHQEVPS 423

Query: 594 PMPSE 598
           P  S+
Sbjct: 424 PSLSK 428

Length = 451

>gnl|CDD|215382 PLN02712, PLN02712, arogenate dehydrogenase

 Score = 40.7 bits (95), Expect = 0.004
 Identities = 19/50 (38%), Positives = 24/50 (48%)

Query: 752 PPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIP 801
           PPPPP PPP   P S    ++ +L L+  SQ A      PLP S   +  
Sbjct: 2   PPPPPQPPPSLFPTSKPTTMSPRLSLSIKSQSATATDKQPLPNSNPDNTT 51

Length = 667

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1052
KOG2283	434	consensus Clathrin coat dissociation kinase GAK/PT	100.0
PF10409	134	PTEN_C2: C2 domain of PTEN tumour-suppressor prote	99.95
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	99.95
smart00498	432	FH2 Formin Homology 2 Domain. FH proteins control	99.86
PF02181	370	FH2: Formin Homology 2 Domain; InterPro: IPR015425	99.82
PTZ00242	166	protein tyrosine phosphatase; Provisional	99.65
KOG1923	830	consensus Rac1 GTPase effector FRL [Signal transdu	99.62
KOG1925	817	consensus Rac1 GTPase effector FHOS [Signal transd	99.54
PTZ00393	241	protein tyrosine phosphatase; Provisional	99.47
KOG1720	225	consensus Protein tyrosine phosphatase CDC14 [Defe	99.44
KOG1922	833	consensus Rho GTPase effector BNI1 and related for	99.39
smart00195	138	DSPc Dual specificity phosphatase, catalytic domai	99.18
PF05706	168	CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3)	99.17
KOG1719	183	consensus Dual specificity phosphatase [Defense me	99.1
COG2453	180	CDC14 Predicted protein-tyrosine phosphatase [Sign	99.04
PF00782	133	DSPc: Dual specificity phosphatase, catalytic doma	99.03
PHA03247	3151	large tegument protein UL36; Provisional	99.01
cd00127	139	DSPc Dual specificity phosphatases (DSP); Ser/Thr	98.98
PRK12361	547	hypothetical protein; Provisional	98.93
PHA03247	3151	large tegument protein UL36; Provisional	98.77
smart00012	105	PTPc_DSPc Protein tyrosine phosphatase, catalytic	98.73
smart00404	105	PTPc_motif Protein tyrosine phosphatase, catalytic	98.73
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	98.46
KOG2836	173	consensus Protein tyrosine phosphatase IVA1 [Signa	98.27
cd00047	231	PTPc Protein tyrosine phosphatases (PTP) catalyze	98.2
PRK15375	535	pathogenicity island 1 effector protein StpP; Prov	98.11
smart00194	258	PTPc Protein tyrosine phosphatase, catalytic domai	98.07
PF00102	235	Y_phosphatase: Protein-tyrosine phosphatase; Inter	97.94
KOG0790	600	consensus Protein tyrosine phosphatase Corkscrew a	97.8
PF03162	164	Y_phosphatase2: Tyrosine phosphatase family; Inter	97.78
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	97.72
KOG2386	393	consensus mRNA capping enzyme, guanylyltransferase	97.59
KOG0792	1144	consensus Protein tyrosine phosphatase PTPMEG, con	97.54
KOG1716	285	consensus Dual specificity phosphatase [Defense me	97.47
PHA02742	303	protein tyrosine phosphatase; Provisional	97.26
PHA02747	312	protein tyrosine phosphatase; Provisional	97.26
PLN02727	986	NAD kinase	97.24
PHA02746	323	protein tyrosine phosphatase; Provisional	97.16
PF14566	149	PTPlike_phytase: Inositol hexakisphosphate; PDB: 1	97.07
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	97.04
KOG0791	374	consensus Protein tyrosine phosphatase, contains f	97.03
PHA02740	298	protein tyrosine phosphatase; Provisional	96.96
PHA02738	320	hypothetical protein; Provisional	96.95
TIGR01244	135	conserved hypothetical protein TIGR01244. No membe	96.93
KOG1718	198	consensus Dual specificity phosphatase [Defense me	95.69
KOG1717	343	consensus Dual specificity phosphatase [Defense me	95.62
COG5599	302	PTP2 Protein tyrosine phosphatase [Signal transduc	95.61
PF13350	164	Y_phosphatase3: Tyrosine phosphatase family; PDB:	95.47
KOG0789	415	consensus Protein tyrosine phosphatase [Signal tra	94.64
KOG4228	1087	consensus Protein tyrosine phosphatase [Signal tra	94.63
COG2365	249	Protein tyrosine/serine phosphatase [Signal transd	94.46
KOG0793	1004	consensus Protein tyrosine phosphatase [Signal tra	94.41
KOG1572	249	consensus Predicted protein tyrosine phosphatase [	94.41
PF04273	110	DUF442: Putative phosphatase (DUF442); InterPro: I	93.41
PF14671	141	DSPn: Dual specificity protein phosphatase, N-term	92.87
KOG4228	1087	consensus Protein tyrosine phosphatase [Signal tra	89.74
COG5350	172	Predicted protein tyrosine phosphatase [General fu	84.8

>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=2.5e-57  Score=520.85  Aligned_cols=307  Identities=21%  Similarity=0.351  Sum_probs=257.9

Q ss_pred             hhhhccCCCCCceeeeeCcEEEEecCCCCCCCCcccccccHHHHHHHHhhhCCCCcEEEEeecCCCccchhhhhhcccCc
Q 001565            4 LSRFFYKRPPDGLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDV   83 (1052)
Q Consensus         4 ~rr~~~rk~~LDLtYIT~RIiam~~~fPae~~~E~~YRN~i~dV~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~s~f~~   83 (1052)
                      .||..+++.||||+|||+|||||  +||++++ |+.|||+|+||+.||+++|++ ||+|||||.|+.     |+..+|++
T Consensus         3 k~r~~~~~~DLDltYIT~rIIam--sfPa~~~-es~yRN~l~dV~~fL~s~H~~-~y~vyNL~~er~-----yd~~~f~g   73 (434)
T KOG2283|consen    3 KRRYNEGGFDLDLTYITSRIIAM--SFPAEGI-ESLYRNNLEDVVLFLDSKHKD-HYKVYNLSSERL-----YDPSRFHG   73 (434)
T ss_pred             cchhhhccccccceeeeeeEEEE--eCCCCcc-hhhhcCCHHHHHHHHhhccCC-ceEEEecCcccc-----CCcccccc
Confidence            47888899999999999999999  8999999 889999999999999999998 999999995443     36789999


Q ss_pred             EEeeCCCCCCCCCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhcCCccHHHHHHHHHHhc
Q 001565           84 TVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREA  163 (1052)
Q Consensus        84 ~V~~yP~~d~g~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~~~~~~~Al~~~~k~~  163 (1052)
                      +|..|+|.|||+|  +|++|+.||++|++||++|++ ||||||||+||||+ |+||||||+|++++.++++||++|..+ 
T Consensus        74 ~V~~~~~~Dh~~P--~L~~l~~~c~~~~~WL~~d~~-nVvvvHCk~Gkgrt-g~~icA~L~~~~~~~ta~eald~~~~k-  148 (434)
T KOG2283|consen   74 RVARFGFDDHNPP--PLELLCPFCKSMDNWLSEDPK-NVVVVHCKAGKGRT-GVMICAYLIYSGISATAEEALDYFNEK-  148 (434)
T ss_pred             ceeecCCCCCCCC--cHHHHHHHHHCHHHHHhcCcc-ceEEEEccCCCcce-EEEEeHHHHhhhhcCCHHHHHHHHhhh-
Confidence            9999999999998  899999999999999999999 99999999999998 999999999999999999999999622 


Q ss_pred             CccccccCCCCCCCchHHHHHHHHHHhhCCCCCCCCCC--ceeEEEEEEeecCccCC-CCccceEEEeeccCcccCCCCC
Q 001565          164 PKGFLQLLSPLNPFPSQLRYLQYVARRNITPEWPPPER--ALSLDCVILRAIPNFDA-QNGCRPIIRIFGRNFRSKGGLS  240 (1052)
Q Consensus       164 ~~~~~~~~s~~n~~PSQ~RYV~Yf~~ll~~~~~pp~~~--~l~L~~IiL~~iP~f~~-~~GcrP~l~Iy~~~~~~~~~~~  240 (1052)
                        |+..+.+..+++|||+|||+||++++......++.+  .++|+.++|..||+|.+ .+||+++++||++         
T Consensus       149 --R~~~~~~~~~~~PSq~RYv~Y~~~~l~~~~~~~~~~~~~~f~~~~~~~~ip~~~~~~~~~~~~~~v~~~---------  217 (434)
T KOG2283|consen  149 --RFDEGKSKGVTIPSQRRYVGYFSRVLLNGPLPPRSNSCPLFLHSFILISIPNFNSSRDGCRPAFPVYQG---------  217 (434)
T ss_pred             --hccccccCCccCchhhHHHHHHHHHhhcCCcCcccccCceEeeeeeeeecCcccccCCCCCccceeeec---------
Confidence              233343344489999999999999654445567777  99999999999999544 4999999999998         


Q ss_pred             ccEEEeccccccccceecccCCcEEEEeecccccCCeEEEEEeCCCCC-------CcceeEEEEEeecccccC--CeEEE
Q 001565          241 TQMIFSMSKKRKTLRHYRQADCDVIKIDIQCLVQGDVVLECVHLDLDP-------EREVMMFRVMFNTAFIRS--NILML  311 (1052)
Q Consensus       241 ~~~lfst~~~~~~~r~y~~~d~~~i~i~i~~~V~GDV~I~~~h~~~~~-------~~~~~mFr~~FnT~FI~~--n~L~l  311 (1052)
                      .+.+|++..+. .++.|.. +++ |+|++++.++    ++|||.+...       ..+...|.++|||+|+..  ..+.+
T Consensus       218 k~~~~~~~s~~-~~~~~~~-~g~-~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (434)
T KOG2283|consen  218 KKKVYSFSSDG-IMRLGEL-DGK-IVIPLGLRVD----VKCYHKRTSSGNRGILKDKEFKGCQIQFYTGPFPEDETVVRF  290 (434)
T ss_pred             ceeeEEeccCC-ccccccc-ccc-eecccccccc----eEEEeeccccCCcceeeccccceEEEeccCCCccccceeeec
Confidence            47788888877 8888887 665 7899988887    9999976432       336678999999999874  45667


Q ss_pred             ecCCCCccccccCCCCCCcEEEEEEecCCCCC
Q 001565          312 NSENLDILWDSKERYPKGFRAEVLFGDVESIS  343 (1052)
Q Consensus       312 ~k~eLD~~~~~k~~fp~dF~Vel~F~~~~~~~  343 (1052)
                      .+.+++.. ...+.+..-|.+.+.-.+.....
T Consensus       291 ~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~  321 (434)
T KOG2283|consen  291 FQADLPIY-VSNEFVFNFFQVSLEVENTPNDD  321 (434)
T ss_pred             ccccCCcc-ccccccccccceeeecccCcccc
Confidence            77777763 33466677777777654444333

>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain

Probab=99.95  E-value=1.3e-27  Score=236.97  Aligned_cols=131  Identities=34%  Similarity=0.666  Sum_probs=107.7

Q ss_pred             CCCCceeEEEEEEeecCccCCCCccceEEEeeccCcccCCCCCccEEEeccccccccceecccCCcEEEEeecccccCCe
Q 001565          198 PPERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTLRHYRQADCDVIKIDIQCLVQGDV  277 (1052)
Q Consensus       198 p~~~~l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~lfst~~~~~~~r~y~~~d~~~i~i~i~~~V~GDV  277 (1052)
                      ++.++|+|++|+|++||.|+.++|||||++||+++         +.+|.+...+...+.|.+.. ..|.++.++.|+|||
T Consensus         1 ~~~~~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~---------~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~GDV   70 (134)
T PF10409_consen    1 PPPRPLFLKSIILHGIPNFNSGGGCRPYIEIYNGG---------KKVFSTSKSYEDPKSYEQDS-VIIELPKNLPLRGDV   70 (134)
T ss_dssp             -S--EEEEEEEEEES-TTSTTSSCCTEEEEEEETT---------EEEEETCCTCCCCCEEETTC-EEEEEEEEEEEESEE
T ss_pred             CCCeeEEEEEEEEECCCccCCCCCEEEEEEEECCC---------ccEEEeccceecccccccee-EEEEeCCCCeEeCCE
Confidence            35688999999999999998889999999999995         67877766666666664443 346677789999999


Q ss_pred             EEEEEeCCCCCCcceeEEEEEeeccccc--CCeEEEecCCCCccccc-cCCCCCCcEEEEEEec
Q 001565          278 VLECVHLDLDPEREVMMFRVMFNTAFIR--SNILMLNSENLDILWDS-KERYPKGFRAEVLFGD  338 (1052)
Q Consensus       278 ~I~~~h~~~~~~~~~~mFr~~FnT~FI~--~n~L~l~k~eLD~~~~~-k~~fp~dF~Vel~F~~  338 (1052)
                      +|+|||.+.....+++||||||||+||+  ++.|+|+|+|||.++++ .++|++||+|||+|++
T Consensus        71 ~i~~~~~~~~~~~~~~~f~~~FnT~Fi~~~~~~l~~~k~eLD~~~kdk~k~f~~~f~Vel~f~e  134 (134)
T PF10409_consen   71 LIKFYHKRSSSMSKEKMFRFWFNTGFIEPNNNVLRFTKSELDKAHKDKHKRFPPDFKVELVFSE  134 (134)
T ss_dssp             EEEEEECETTECCCEEEEEEEEEGGGSBTTTCEEEEEGGGSBTCCCGCTCCS-TT-EEEEEEEE
T ss_pred             EEEEEeCCCcccccCeEEEEEEeeeeeeccccEEEcCHHHCCCcccCcccccCCCeEEEEEEeC
Confidence            9999999866666789999999999999  99999999999999874 3899999999999986

The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=99.95  E-value=2.1e-27  Score=275.40  Aligned_cols=154  Identities=16%  Similarity=0.322  Sum_probs=128.7

Q ss_pred             ccCCCCcCCCCCCCcCCcccccccc--ccCCCccccccccccccCCCCCChHHHHHHHhccCCCCCCCCCCcccCC-CCC
Q 001565          895 RLNSGVSHAPKKASLKPLHWVKVTR--AMQGSLWADSQKQENHSRAPEIDISELESLFSAASDGSGTNKTGVRRGS-NIN  971 (1052)
Q Consensus       895 ~~l~~~~~~~p~~klK~LhW~KI~~--~i~gTiW~~~~~~~~~~~~~eiD~~eLE~lFs~~~~~~~~~k~~~~~~s-~~k  971 (1052)
                      -++..++..++...||+++|.||..  -.++++|.+++++.  ....++ |.+|+..|+.+.+..+....+..+++ .+|
T Consensus       612 ~gLkpKK~~k~e~~Mrr~nW~kI~p~d~s~~cFWvkv~Edk--~en~dl-fakL~~~Fatq~k~~k~~e~~eekkt~~kK  688 (1102)
T KOG1924|consen  612 FGLKPKKVYKPEVPMRRFNWSKIVPRDLSENCFWVKVNEDK--LENDDL-FAKLALKFATQPKVKKEQEGGEEKKTGTKK  688 (1102)
T ss_pred             CCCCccccCCCCCccccCCccccCccccCccceeeecchhh--ccchHH-HHHHHHHhhccccccccccccccccchhhh
Confidence            3467788889999999999999973  45899999998533  222222 89999999998666552222222222 256


Q ss_pred             CCcchhhhhhhhhhhHHHHhhcCCCChHhHHHHHHhcCCCCCCHHHHHHHHHhCCCHHHHHHHHhhcCCCCCCCCCCCCC
Q 001565          972 KPEKVQLVELRRAYNCEIMLTKIKIPLPDMMNAVLALDSSALDIDQVENLIKFCPTKEEMELLKNYAGDKVMLGKCEQVP 1051 (1052)
Q Consensus       972 K~~kvslLD~KRaqNi~I~L~klk~s~eeL~~aIl~lD~~~L~~e~l~~Llk~lPT~EEi~~Lk~y~gd~~~Lg~~EqFl 1051 (1052)
                      |.+...|||.|.+||++|+|+.|||+.+||+.+||++|+++|++..|++|++.+|..|.+..|.++..+.+.|.+.|||.
T Consensus       689 k~kel~ilDsKtaQnLsIflgS~rmpyeeik~~ILevne~vLse~~iqnLik~lPe~E~l~~L~e~Kaeye~l~e~EQF~  768 (1102)
T KOG1924|consen  689 KVKELRILDSKTAQNLSIFLGSFRMPYEEIKNVILEVNEDVLSESMIQNLIKHLPEQEQLNKLSELKAEYEDLPEPEQFV  768 (1102)
T ss_pred             hhhhheecchHHHHHHHHHHhhccCCHHHHHHHHhhccHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCCHHHHh
Confidence            77778899999999999999999999999999999999999999999999999999999999999999999999999995

>smart00498 FH2 Formin Homology 2 Domain

Probab=99.86  E-value=5.2e-22  Score=233.14  Aligned_cols=144  Identities=29%  Similarity=0.529  Sum_probs=122.6

Q ss_pred             CCCCCCCcCCcccccccc-ccCCCccccccccccccCCCCCChHHHHHHHhccCCCCCCCCCCccc--CCCCCCCcchhh
Q 001565          902 HAPKKASLKPLHWVKVTR-AMQGSLWADSQKQENHSRAPEIDISELESLFSAASDGSGTNKTGVRR--GSNINKPEKVQL  978 (1052)
Q Consensus       902 ~~~p~~klK~LhW~KI~~-~i~gTiW~~~~~~~~~~~~~eiD~~eLE~lFs~~~~~~~~~k~~~~~--~s~~kK~~kvsl  978 (1052)
                      ..+++.+||+|||+||.. ++++|||+++++.      .++|+++||++|+++.......+.....  ....++.++|+|
T Consensus         3 ~~~P~~klK~l~W~ki~~~~~~~tvW~~i~~~------~~~d~~~lE~lF~~k~~~~~~~~~~~~~~~~~~~~~~~~v~i   76 (432)
T smart00498        3 EPKPKKKLKPLHWDKLNPLDPRGTVWDKIDEN------SEGDLDELEELFAAKEKTKSASKDVSEKKSILKKKVSQEFKI   76 (432)
T ss_pred             CCCCCCCCcCcCceeCCCccccCChhhhcCcc------cccCHHHHHHHhCcCccccCccccccccccccccccccceEe
Confidence            457899999999999985 6899999999742      2799999999999876554311111111  112345677999


Q ss_pred             hhhhhhhhHHHHhhcCCCChHhHHHHHHhcCCCCCCHHHHHHHHHhCCCHHHHHHHHhhcCC-CCCCCCCCCCC
Q 001565          979 VELRRAYNCEIMLTKIKIPLPDMMNAVLALDSSALDIDQVENLIKFCPTKEEMELLKNYAGD-KVMLGKCEQVP 1051 (1052)
Q Consensus       979 LD~KRaqNi~I~L~klk~s~eeL~~aIl~lD~~~L~~e~l~~Llk~lPT~EEi~~Lk~y~gd-~~~Lg~~EqFl 1051 (1052)
                      ||.||+|||+|+|++|+++.++|++||+.||..+|+.|.|++|++++||.||+++|++|.|+ .+.|+.+|||+
T Consensus        77 ld~krs~ni~I~L~~l~~~~~ei~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~L~~~Eqfl  150 (432)
T smart00498       77 LDPKRSQNLAILLRKLHMSYEEICEAILEGDEDVLSVDLLEQLLKYAPTKEELKKLREYKEEDPEELARAEQFL  150 (432)
T ss_pred             echhHHhhHHHHHHhcCCCHHHHHHHHHhcChhhCCHHHHHHHHhhCcCHHHHHHHHHhcccchhhcchHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999987 79999999997

FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.

>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []

Probab=99.82  E-value=1.7e-21  Score=224.46  Aligned_cols=145  Identities=35%  Similarity=0.627  Sum_probs=112.6

Q ss_pred             cCCCCCCCcCCcccccccc-ccCCCccccccccccccCCCCCChHHHHHHHhccCCCCCCCCCCcccCCCCCCCcchhhh
Q 001565          901 SHAPKKASLKPLHWVKVTR-AMQGSLWADSQKQENHSRAPEIDISELESLFSAASDGSGTNKTGVRRGSNINKPEKVQLV  979 (1052)
Q Consensus       901 ~~~~p~~klK~LhW~KI~~-~i~gTiW~~~~~~~~~~~~~eiD~~eLE~lFs~~~~~~~~~k~~~~~~s~~kK~~kvslL  979 (1052)
                      ...+++.+||+|||++|.. ++++|||++++..+..   ..+|+++||++|+++.......+   ......++.+.++||
T Consensus         3 ~~~~p~~k~k~l~W~~i~~~~~~~tiW~~~~~~~~~---~~~d~~~le~~F~~~~~~~~~~~---~~~~~~~~~~~~~iL   76 (370)
T PF02181_consen    3 KKPKPKKKLKPLHWDKIPNSKIKGTIWSKIDEDEFN---IDIDFEELEELFAKKEKEKKSKK---KQASKKKKKKKISIL   76 (370)
T ss_dssp             -----SS-B------EESSGGCTTSCCCCTCCHHHH---CTSHHHHHHHHTBSCECHHHH-------HCCCCTTCCESSS
T ss_pred             CCCCCCCCCcCCCceecCcccccCCccccCcccccc---hhhhHHHHHHHhccccccccccc---ccccccccccccccc
Confidence            4567899999999999995 7899999999854321   27899999999999877644111   112334788889999


Q ss_pred             hhhhhhhHHHHhhcCCCChHhHHHHHHhcCCCCCCHHHHHHHHHhCCCHHHHHHHHhhcCCCCCCCCCCCCC
Q 001565          980 ELRRAYNCEIMLTKIKIPLPDMMNAVLALDSSALDIDQVENLIKFCPTKEEMELLKNYAGDKVMLGKCEQVP 1051 (1052)
Q Consensus       980 D~KRaqNi~I~L~klk~s~eeL~~aIl~lD~~~L~~e~l~~Llk~lPT~EEi~~Lk~y~gd~~~Lg~~EqFl 1051 (1052)
                      |.||+|||+|+|++|+++.++|+++|+.||..+|+.|.|+.|++++||.||+++|++|.|+.+.|+.+|||+
T Consensus        77 d~kr~~ni~I~L~~~~~~~~~l~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~L~~~E~f~  148 (370)
T PF02181_consen   77 DPKRSQNIGIVLKKFKLSPEELIQAILNLDEEVLTEELLENLLKILPTPEEIEALKAYKGDPATLGPAEQFL  148 (370)
T ss_dssp             -HHHHHHHHHHHHHHTS-HHHHHHHHHTTTTCCCTHHHHHHHHHHCGGHHHHHHHHCTCTSGTTB-HHHHHH
T ss_pred             chHHHHHHHHHhhccCCCHHHHHHHHHccCccccchHHHHHHHhcCCCchHHHHHHHHhccHHhhccHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999996

Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.

>PTZ00242 protein tyrosine phosphatase; Provisional

Probab=99.65  E-value=4e-15  Score=153.33  Aligned_cols=152  Identities=16%  Similarity=0.155  Sum_probs=115.3

Q ss_pred             CCCceeeeeCcEEEEecCCCCCCCCcccccccHHHHHHHHhhhCCCCcEEEEeecCCCccchhhhhhcccCcEEeeCCCC
Q 001565           12 PPDGLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQ   91 (1052)
Q Consensus        12 ~~LDLtYIT~RIiam~~~fPae~~~E~~YRN~i~dV~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~s~f~~~V~~yP~~   91 (1052)
                      +|-.++||+.|+|+|  .-|.+.        .+.+-++.|++.+   -..|.|++++.|..   ..+...+..+.++|+.
T Consensus         7 ~~~~~~~~~~r~~~~--~~P~~~--------~~~~~l~~L~~~g---I~~Iv~l~~~~~~~---~~~~~~gi~~~~~p~~   70 (166)
T PTZ00242          7 KDRQIEYVLFKFLIL--DAPSPS--------NLPLYIKELQRYN---VTHLVRVCGPTYDA---ELLEKNGIEVHDWPFD   70 (166)
T ss_pred             CCcceeeeceEEEEe--cCCCcc--------cHHHHHHHHHhCC---CeEEEecCCCCCCH---HHHHHCCCEEEecCCC
Confidence            355799999999999  456532        2323345666653   46799998876532   2345678899999999


Q ss_pred             CCCCCCChHHHHHHHHHHHHHHHhh--CCCccEEEEEecCCCcchHHHHHHHHHHHhcCCccHHHHHHHHHHhcCccccc
Q 001565           92 YEGCPLLPMSLIQHFLRVCEHWLLL--GDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGFLQ  169 (1052)
Q Consensus        92 d~g~P~p~L~~L~~~c~~~~~WL~~--d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~~~~~~~Al~~~~k~~~~~~~~  169 (1052)
                      |++.|  +.+.+..|++.++.++..  +.. +.|+|||.+|.||+ |+++||||+..+.+ +.++|++++.++++..   
T Consensus        71 D~~~P--~~~~i~~~~~~i~~~~~~~~~~g-~~V~VHC~aGigRS-gt~~a~yL~~~~~~-s~~eAi~~vr~~R~~~---  142 (166)
T PTZ00242         71 DGAPP--PKAVIDNWLRLLDQEFAKQSTPP-ETIAVHCVAGLGRA-PILVALALVEYGGM-EPLDAVGFVREKRKGA---  142 (166)
T ss_pred             CCCCC--CHHHHHHHHHHHHHHHHhhccCC-CeEEEECCCCCCHH-HHHHHHHHHHhCCC-CHHHHHHHHHHHCCCC---
Confidence            98877  788899999999888866  444 78999999999997 99999999998877 5778999996544321   


Q ss_pred             cCCCCCCCchHHHHHHHHHHhhCC
Q 001565          170 LLSPLNPFPSQLRYLQYVARRNIT  193 (1052)
Q Consensus       170 ~~s~~n~~PSQ~RYV~Yf~~ll~~  193 (1052)
                          +  ...|++||+.|.+.++.
T Consensus       143 ----i--~~~Q~~~l~~~~~~~~~  160 (166)
T PTZ00242        143 ----I--NQTQLQFLKKYKPRKKA  160 (166)
T ss_pred             ----c--hHHHHHHHHHHHHHhcc
Confidence                1  46899999999876543

>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]

Probab=99.62  E-value=1.6e-15  Score=178.79  Aligned_cols=151  Identities=22%  Similarity=0.395  Sum_probs=123.8

Q ss_pred             CCCCcCCCCCCCcCCcccccccc-ccCCCccccccccccccCCCCCChHHHHHHHhccCCCCC-CCCCCcccCCCCCCCc
Q 001565          897 NSGVSHAPKKASLKPLHWVKVTR-AMQGSLWADSQKQENHSRAPEIDISELESLFSAASDGSG-TNKTGVRRGSNINKPE  974 (1052)
Q Consensus       897 l~~~~~~~p~~klK~LhW~KI~~-~i~gTiW~~~~~~~~~~~~~eiD~~eLE~lFs~~~~~~~-~~k~~~~~~s~~kK~~  974 (1052)
                      .+.......+.++-.++|..+.. +++||++++++   |+.+...+|++++|+.|........ ......+.+...+...
T Consensus       359 ~~ik~~~~tk~~~p~lnW~alKP~qv~~tvf~~~~---De~Il~~lD~~~~ee~Fk~~~s~~~~~~e~~a~~~~~~ka~q  435 (830)
T KOG1923|consen  359 ATIKKPTPTKTKSPSLNWLALKPIQVKGTVFHELN---DEKILEALDFSRFEEQFKILKSNGQILDESSAVSKAMTKAPQ  435 (830)
T ss_pred             HhhcCCCcccccCCCccccccCccccccchhhhhh---HHHHHHhhhHHHHHHHHHhhhcccchhhhHHHHHHHhhhhhh
Confidence            45566667788899999999984 88999999987   4567778999999999998332222 1111122233345678


Q ss_pred             chhhhhhhhhhhHHHHhhcCCCChHhHHHHHHhcCCCCCCHHHHHHHHHhCCCHHHHHHHHhhcCC---CCCCCCCCCCC
Q 001565          975 KVQLVELRRAYNCEIMLTKIKIPLPDMMNAVLALDSSALDIDQVENLIKFCPTKEEMELLKNYAGD---KVMLGKCEQVP 1051 (1052)
Q Consensus       975 kvslLD~KRaqNi~I~L~klk~s~eeL~~aIl~lD~~~L~~e~l~~Llk~lPT~EEi~~Lk~y~gd---~~~Lg~~EqFl 1051 (1052)
                      +++++|.+|..|++|-++ +.+..++|+.||-.+|...|..+.|++|.+|+||++|..+|++|..+   .+.|...++|+
T Consensus       436 k~tLle~~R~~nlaiT~R-~~~~~~~V~~Aih~~dLk~L~~~~ve~L~r~lPTe~E~kl~~~~~~e~~pme~Ls~edkFm  514 (830)
T KOG1923|consen  436 KRTLLEQRRLFNLAITRR-VQMKAKEVMAAIHPLDLKALSLEPVELLQRILPTEAEVKLLREYERERSPMENLSEEDKFM  514 (830)
T ss_pred             hhhHHHHHHHHHHHHHhh-hcCchHHHHHHhhhccccccCCcHHHHHHhcCCchHHHHHHHHhhhhcCchhhcccchhhh
Confidence            999999999999999999 99999999999999999999999999999999999999999999754   47899998886

>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]

Probab=99.54  E-value=9.1e-15  Score=164.40  Aligned_cols=134  Identities=25%  Similarity=0.386  Sum_probs=112.0

Q ss_pred             CCCCcCCcccccccc---------ccCCCccccccccccccCCCCCChHHHHHHHhccCCCCCCCCCCcccCCCCCCCcc
Q 001565          905 KKASLKPLHWVKVTR---------AMQGSLWADSQKQENHSRAPEIDISELESLFSAASDGSGTNKTGVRRGSNINKPEK  975 (1052)
Q Consensus       905 p~~klK~LhW~KI~~---------~i~gTiW~~~~~~~~~~~~~eiD~~eLE~lFs~~~~~~~~~k~~~~~~s~~kK~~k  975 (1052)
                      .++++-+|||.-++-         ..++|+|+.++.       ..+|...||.||+.++.+..-.|+     ....|...
T Consensus       280 ~~r~~~KL~Wr~~~~~~~~Gv~~~r~~~t~W~s~D~-------~~~D~~r~~~LFEsr~~~~~P~KK-----~~E~r~~~  347 (817)
T KOG1925|consen  280 TKRKTVKLFWRDVKLAGGHGVSASRPCATLWASLDP-------VSVDTARLEHLFESRAKEVLPSKK-----AGEGRRTM  347 (817)
T ss_pred             ccCceeEEEeecceecCCCCCccccccchhhhccCc-------ceecHHHHHHHHHHhhhhhccchh-----hcccceee
Confidence            355667899997762         247899999984       348999999999988766552232     22357778


Q ss_pred             hhhhhhhhhhhHHHHhhcCCCChHhHHHHHHhcCCCCCCHHHHHHHHHhCCCHHHHHHHHhh--cCCCCCCCCCCCCC
Q 001565          976 VQLVELRRAYNCEIMLTKIKIPLPDMMNAVLALDSSALDIDQVENLIKFCPTKEEMELLKNY--AGDKVMLGKCEQVP 1051 (1052)
Q Consensus       976 vslLD~KRaqNi~I~L~klk~s~eeL~~aIl~lD~~~L~~e~l~~Llk~lPT~EEi~~Lk~y--~gd~~~Lg~~EqFl 1051 (1052)
                      .++||.||+|.|+|.|.+|. ++..|..||+++|+-+++.|.|+.|++|+||.||++.|+.-  ....-.||.+|||+
T Consensus       348 ~tVL~~KRt~AINIGLT~LP-Pv~VI~AA~~~FD~~~~~KDGIEK~L~MmPt~eE~qkIe~aqlaNPEipLG~AEQfL  424 (817)
T KOG1925|consen  348 TTVLDPKRTNAINIGLTTLP-PVHVIKAALLNFDEFAVSKDGIEKLLTMMPTEEERQKIEGAQLANPEIPLGPAEQFL  424 (817)
T ss_pred             eeecCcccccceeeccccCC-chhhhHHHHhcchhhhcchhhHHHHHHhCCCHHHHHHHHHHHhcCCCCCCCcHHHHH
Confidence            99999999999999999998 89999999999999999999999999999999999998874  45567999999996

>PTZ00393 protein tyrosine phosphatase; Provisional

Probab=99.47  E-value=6.2e-13  Score=142.30  Aligned_cols=145  Identities=10%  Similarity=0.103  Sum_probs=105.9

Q ss_pred             ceeeeeCcEEEEecCCCCCCCCcccccccHHHHHHHHhhhCCCCcEEEEeecCCCccchhhhhhcccCcEEeeCCCCCCC
Q 001565           15 GLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEG   94 (1052)
Q Consensus        15 DLtYIT~RIiam~~~fPae~~~E~~YRN~i~dV~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~s~f~~~V~~yP~~d~g   94 (1052)
                      .+.|-.=|+|+|+  -|...    .+    .+-+..|+..+-   ..|..+|++.|+.   ..+...+.++.+++|.|++
T Consensus        86 ~ie~~~~rfLi~~--~P~~~----~~----~~yl~eLk~~gV---~~lVrlcE~~Yd~---~~~~~~GI~~~~lpipDg~  149 (241)
T PTZ00393         86 KIEHGKIKILILD--APTND----LL----PLYIKEMKNYNV---TDLVRTCERTYND---GEITSAGINVHELIFPDGD  149 (241)
T ss_pred             hhccCceeEEEeC--CCCHH----HH----HHHHHHHHHcCC---CEEEECCCCCCCH---HHHHHcCCeEEEeecCCCC
Confidence            3444455899994  56532    12    222345555443   4578899886642   2445678899999999998


Q ss_pred             CCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhcCCccHHHHHHHHHHhcCccccccCCCC
Q 001565           95 CPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGFLQLLSPL  174 (1052)
Q Consensus        95 ~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~~~~~~~Al~~~~k~~~~~~~~~~s~~  174 (1052)
                      +|  +.+.|.+|+..++..+..+.   .|+|||++|.||| |+|+||||+..|.  +.++|++++...++..+       
T Consensus       150 aP--s~~~i~~~l~~i~~~l~~g~---~VaVHC~AGlGRT-Gtl~AayLI~~Gm--speeAI~~VR~~RPgAI-------  214 (241)
T PTZ00393        150 AP--TVDIVSNWLTIVNNVIKNNR---AVAVHCVAGLGRA-PVLASIVLIEFGM--DPIDAIVFIRDRRKGAI-------  214 (241)
T ss_pred             CC--CHHHHHHHHHHHHHHHhcCC---eEEEECCCCCCHH-HHHHHHHHHHcCC--CHHHHHHHHHHHCCCCC-------
Confidence            87  79999999999998886554   5999999999998 9999999998653  67789999965443222       


Q ss_pred             CCCchHHHHHHHHHHhhC
Q 001565          175 NPFPSQLRYLQYVARRNI  192 (1052)
Q Consensus       175 n~~PSQ~RYV~Yf~~ll~  192 (1052)
                        ...|++||+-|.....
T Consensus       215 --n~~Q~~fL~~y~~~~~  230 (241)
T PTZ00393        215 --NKRQLQFLKAYKKKKK  230 (241)
T ss_pred             --CHHHHHHHHHHHHhcc
Confidence              3579999998887644

>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]

Probab=99.44  E-value=1.3e-12  Score=135.31  Aligned_cols=154  Identities=11%  Similarity=0.113  Sum_probs=113.5

Q ss_pred             CCCceeeeeCc-EEEEecCCC---CCCCCccccc-ccHHHHHHHHhhhCCCCcEEEEeecCCCccchhhhhhcccCcEEe
Q 001565           12 PPDGLLEFIER-VYVFDSCFS---TEVVPDGMYQ-LYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVL   86 (1052)
Q Consensus        12 ~~LDLtYIT~R-Iiam~~~fP---ae~~~E~~YR-N~i~dV~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~s~f~~~V~   86 (1052)
                      ...|.++|+.. +|++  +-|   +-|+ |+.|- +-...+..+|+.+.   -=.|+-|.++-|+.   .++.+-+..-.
T Consensus        49 e~gdfnwI~p~~~i~f--~~p~~~s~gi-~~~f~~~~~~~~~~~~~~~~---v~s~vrln~~~yd~---~~f~~~Gi~h~  119 (225)
T KOG1720|consen   49 ENGDFNWIIPDRFIAF--AGPHLKSRGI-ESGFPLHLPQPYIQYFKNNN---VTSIVRLNKRLYDA---KRFTDAGIDHH  119 (225)
T ss_pred             CCCCcceeccchhhhh--cCccccccch-hhcccccCChhHHHHhhhcc---cceEEEcCCCCCCh---HHhcccCceee
Confidence            45899999998 6666  222   2345 56666 55666777777322   23466677766542   23444556678


Q ss_pred             eCCCCCCCCCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhcCCccHHHHHHHHHHhcCcc
Q 001565           87 DYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKG  166 (1052)
Q Consensus        87 ~yP~~d~g~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~~~~~~~Al~~~~k~~~~~  166 (1052)
                      |++|.|.++|  +++.+.+|++.+++-++ +.+   |+|||+||-||| |+||||||||...++ +.+|++.+...++..
T Consensus       120 ~l~f~Dg~tP--~~~~v~~fv~i~e~~~~-~g~---iaVHCkaGlGRT-G~liAc~lmy~~g~t-a~eaI~~lR~~RpG~  191 (225)
T KOG1720|consen  120 DLFFADGSTP--TDAIVKEFVKIVENAEK-GGK---IAVHCKAGLGRT-GTLIACYLMYEYGMT-AGEAIAWLRICRPGA  191 (225)
T ss_pred             eeecCCCCCC--CHHHHHHHHHHHHHHHh-cCe---EEEEeccCCCch-hHHHHHHHHHHhCCC-HHHHHHHHHhcCCcc
Confidence            8899998887  89999999999999998 665   999999999998 999999999996665 555999986444332


Q ss_pred             ccccCCCCCCCchHHHHHHHHHHh
Q 001565          167 FLQLLSPLNPFPSQLRYLQYVARR  190 (1052)
Q Consensus       167 ~~~~~s~~n~~PSQ~RYV~Yf~~l  190 (1052)
                      +        ..|-|..|+.-|..+
T Consensus       192 V--------~gpqQ~~l~~~q~~~  207 (225)
T KOG1720|consen  192 V--------IGPQQHKLLHKQRDL  207 (225)
T ss_pred             c--------cCHHHHHHHHHHHHH
Confidence            2        578899999888774

>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]

Probab=99.39  E-value=2e-12  Score=164.06  Aligned_cols=144  Identities=33%  Similarity=0.532  Sum_probs=118.6

Q ss_pred             CCCCCCcCCccccccc-cccCCCccccccccccccCCCCCCh---HHHHHHHhccCCCCCCC-CCCcccCCCCCCCcchh
Q 001565          903 APKKASLKPLHWVKVT-RAMQGSLWADSQKQENHSRAPEIDI---SELESLFSAASDGSGTN-KTGVRRGSNINKPEKVQ  977 (1052)
Q Consensus       903 ~~p~~klK~LhW~KI~-~~i~gTiW~~~~~~~~~~~~~eiD~---~eLE~lFs~~~~~~~~~-k~~~~~~s~~kK~~kvs  977 (1052)
                      ..++.+||++||+++. ......+|.++....     ..+|.   +.+|.+|+......... +.....+.+.-..+.++
T Consensus       390 ~~p~~~lk~l~wdk~~~~~~~~~~w~~~~~~~-----~~~~~~~~~~~e~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (833)
T KOG1922|consen  390 AQPKNKLKPLHWDKTRGSSKRSMVWSEVDSSS-----SLFDPPLSELMEALFGLVKFLPSDNGGDTGREEKTAVEKKRLK  464 (833)
T ss_pred             CCCCCCCCCccccccCCCCccCCCCCccccCC-----cCCCCCcccccccchhhhhcccCCCCCCCcccccccccccccc
Confidence            5678999999999998 467889999998543     22343   89999998876655411 11122222222336688


Q ss_pred             hhhhhhhhhHHHHhhcCCCChHhHHHHHHhcCCCCCCHHHHHHHHHhCCCHHHHHHHHhhcCCCCCCCCCCCCC
Q 001565          978 LVELRRAYNCEIMLTKIKIPLPDMMNAVLALDSSALDIDQVENLIKFCPTKEEMELLKNYAGDKVMLGKCEQVP 1051 (1052)
Q Consensus       978 lLD~KRaqNi~I~L~klk~s~eeL~~aIl~lD~~~L~~e~l~~Llk~lPT~EEi~~Lk~y~gd~~~Lg~~EqFl 1051 (1052)
                      ++|.++++|++|+|+.|++..+++.++|+.+|+.++..++|++|++++|++||..+|+.|.++...|+.+|+|+
T Consensus       465 v~~~r~~~n~~ill~sl~~~~~~~~~a~~~~~~~~~~~~~l~~l~~~~pt~~E~~~l~~~~~~~~~l~~~e~~~  538 (833)
T KOG1922|consen  465 VLDPRRPQNIAILLSSLNMPTEDIPQALLELDDSVLGLDQLEKLLKFAPTKEEETKLKEESGDPLTLGDAEKFF  538 (833)
T ss_pred             ccCCCCccceeeehhhcCCchHHHHHHHhccCccccCHHHHHHHHccCCChhHHHHHHhhcCCCCccchHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999986

>smart00195 DSPc Dual specificity phosphatase, catalytic domain

Probab=99.18  E-value=4e-10  Score=111.99  Aligned_cols=136  Identities=18%  Similarity=0.129  Sum_probs=94.4

Q ss_pred             eeeeCcEEEEecCCCCCCCCcccccccHHHHHHHHhhhCCCCcEEEEeecCCCccchhhhhhcccCcEEeeCCCCCCCCC
Q 001565           17 LEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGCP   96 (1052)
Q Consensus        17 tYIT~RIiam~~~fPae~~~E~~YRN~i~dV~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~s~f~~~V~~yP~~d~g~P   96 (1052)
                      +.|+++|++.  ++++..        +    ..+|.+..   =-.|.||+++...+      ...+.+..++|..|++..
T Consensus         2 ~~I~~~l~~G--~~~~~~--------~----~~~l~~~g---i~~Vi~l~~~~~~~------~~~~~~~~~ipi~D~~~~   58 (138)
T smart00195        2 SEILPHLYLG--SYSSAL--------N----LALLKKLG---ITHVINVTNEVPNL------NKKGFTYLGVPILDNTET   58 (138)
T ss_pred             cEEeCCeEEC--ChhHcC--------C----HHHHHHcC---CCEEEEccCCCCCC------CCCCCEEEEEECCCCCCC
Confidence            5789999888  566522        1    34555542   24688998875421      234567888898885432


Q ss_pred             CChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhcCCccHHHHHHHHHHhcCccccccCCCCCC
Q 001565           97 LLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGFLQLLSPLNP  176 (1052)
Q Consensus        97 ~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~~~~~~~Al~~~~k~~~~~~~~~~s~~n~  176 (1052)
                       ...+.+..+++.++.....+..   |+|||++|.+|+ |+++||||++...++ .++|++++.++++ .+       ..
T Consensus        59 -~~~~~~~~~~~~i~~~~~~~~~---VlVHC~~G~~RS-~~v~~~yl~~~~~~~-~~~A~~~v~~~R~-~~-------~p  124 (138)
T smart00195       59 -KISPYFPEAVEFIEDAEKKGGK---VLVHCQAGVSRS-ATLIIAYLMKYRNLS-LNDAYDFVKDRRP-II-------SP  124 (138)
T ss_pred             -ChHHHHHHHHHHHHHHhcCCCe---EEEECCCCCchH-HHHHHHHHHHHhCCC-HHHHHHHHHHHCC-cc-------CC
Confidence             2456666677777766655554   999999999997 999999999988884 6679999964432 21       13


Q ss_pred             CchHHHHHHHHHH
Q 001565          177 FPSQLRYLQYVAR  189 (1052)
Q Consensus       177 ~PSQ~RYV~Yf~~  189 (1052)
                      ...|++-|.-|++
T Consensus       125 ~~~~~~qL~~~e~  137 (138)
T smart00195      125 NFGFLRQLIEYER  137 (138)
T ss_pred             CHhHHHHHHHHhh
Confidence            5678888887764

>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species

Probab=99.17  E-value=8.7e-11  Score=119.40  Aligned_cols=124  Identities=12%  Similarity=0.071  Sum_probs=77.4

Q ss_pred             eCcEEEEecCCCCCCCCcccccccHHHHHHHHhhhCCCCcEEEEeecCCCc----c-chhhhhhcccCcEEeeCCCCCCC
Q 001565           20 IERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEK----Q-SEFAEILCEYDVTVLDYPRQYEG   94 (1052)
Q Consensus        20 T~RIiam~~~fPae~~~E~~YRN~i~dV~~~L~~~h~~~~y~V~NLs~~~~----~-s~~~~~~s~f~~~V~~yP~~d~g   94 (1052)
                      +.+|..+  ..|.-.+ .. +|.+++.=+..|+...-.   .|+-|+++..    + .++...+...++.+.+||+.|.+
T Consensus        40 ~~~Lglt--~~PG~k~-~d-~~RdL~~DL~~Lk~~G~~---~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~  112 (168)
T PF05706_consen   40 SGFLGLT--FLPGCKF-KD-WRRDLQADLERLKDWGAQ---DVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGS  112 (168)
T ss_dssp             SSEEEEE--S-TT-EE-TT-EEB-HHHHHHHHHHTT-----EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS
T ss_pred             cceeeee--cCCCccc-cc-ccchHHHHHHHHHHCCCC---EEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCC
Confidence            4455555  6787655 44 444444445566664433   3566765422    1 23444567788999999999999


Q ss_pred             CCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhcCCccHHHHH
Q 001565           95 CPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTL  156 (1052)
Q Consensus        95 ~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~~~~~~~Al  156 (1052)
                      +|  .++.+..++..+..+|.++.+   |+|||++|.||| |+|+||+|++.+..-..++|+
T Consensus       113 aP--d~~~~~~i~~eL~~~L~~g~~---V~vHC~GGlGRt-GlvAAcLLl~L~~~~~p~~AI  168 (168)
T PF05706_consen  113 AP--DFAAAWQILEELAARLENGRK---VLVHCRGGLGRT-GLVAACLLLELGDTMSPEQAI  168 (168)
T ss_dssp             -----HHHHHHHHHHHHHHHHTT-----EEEE-SSSSSHH-HHHHHHHHHHH-SSS-HHHHH
T ss_pred             CC--CHHHHHHHHHHHHHHHHcCCE---EEEECCCCCCHH-HHHHHHHHHHHcCCCChhhcC
Confidence            98  789999999999999999876   999999999998 999999999999888888775

The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.

>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]

Probab=99.10  E-value=4.6e-10  Score=111.24  Aligned_cols=99  Identities=23%  Similarity=0.346  Sum_probs=78.7

Q ss_pred             hhcccCcEEeeCCC-CCCCCCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhcCCccHHHH
Q 001565           77 ILCEYDVTVLDYPR-QYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRT  155 (1052)
Q Consensus        77 ~~s~f~~~V~~yP~-~d~g~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~~~~~~~A  155 (1052)
                      +.+.+++..+..+- ++.|.|  +++.|+..++.|++++++++.   |.||||||++|. +||++||||..+.++.++ |
T Consensus        70 ~wk~~giE~L~i~T~D~~~~P--s~~~i~~aVeFi~k~asLGkt---vYVHCKAGRtRS-aTvV~cYLmq~~~wtpe~-A  142 (183)
T KOG1719|consen   70 LWKNYGIEFLVIPTRDYTGAP--SLENIQKAVEFIHKNASLGKT---VYVHCKAGRTRS-ATVVACYLMQHKNWTPEA-A  142 (183)
T ss_pred             HHHhccceeEEeccccccCCC--CHHHHHHHHHHHHhccccCCe---EEEEecCCCccc-hhhhhhhhhhhcCCCHHH-H
Confidence            44555555444332 345676  899999999999999999998   999999999996 999999999999987665 9


Q ss_pred             HHHHHHhcCccccccCCCCCCCchHHHHHHHHHHh
Q 001565          156 LEIVHREAPKGFLQLLSPLNPFPSQLRYLQYVARR  190 (1052)
Q Consensus       156 l~~~~k~~~~~~~~~~s~~n~~PSQ~RYV~Yf~~l  190 (1052)
                      ++++.+.+++-+        ..|+|++-|.-|.+.
T Consensus       143 ~~~vr~iRp~Vl--------L~~~Qw~~l~ef~~~  169 (183)
T KOG1719|consen  143 VEHVRKIRPRVL--------LRPAQWDVLKEFYKQ  169 (183)
T ss_pred             HHHHHhcCccee--------ecHHHHHHHHHHHHH
Confidence            999976655443        589999999766543

>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]

Probab=99.04  E-value=9.6e-10  Score=115.03  Aligned_cols=98  Identities=15%  Similarity=0.132  Sum_probs=79.9

Q ss_pred             ccCcEEeeCCCCCCCCCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhcCCccHHHHHHHH
Q 001565           80 EYDVTVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIV  159 (1052)
Q Consensus        80 ~f~~~V~~yP~~d~g~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~~~~~~~Al~~~  159 (1052)
                      ..+.++.++++.|++.|  .++.|.+++..|++-++++.+   |||||.+|.||| ||++|||||+.+.+...++++.++
T Consensus        70 ~~~~~~~~~~~~D~~~p--~~~~l~~~v~~i~~~~~~g~k---VvVHC~~GigRS-gtviaA~lm~~~~~~~~~~~i~~~  143 (180)
T COG2453          70 NDGIQVLHLPILDGTVP--DLEDLDKIVDFIEEALSKGKK---VVVHCQGGIGRS-GTVIAAYLMLYGGLSLADEAIAVK  143 (180)
T ss_pred             cCCceeeeeeecCCCCC--cHHHHHHHHHHHHHHHhcCCe---EEEEcCCCCchH-HHHHHHHHHHHcCCCCHHHHHHHH
Confidence            34567889999999998  789999999999999988876   999999999997 999999999998899999888877


Q ss_pred             HHhcCccccccCCCCCCCchHHHHHHHHHHhh
Q 001565          160 HREAPKGFLQLLSPLNPFPSQLRYLQYVARRN  191 (1052)
Q Consensus       160 ~k~~~~~~~~~~s~~n~~PSQ~RYV~Yf~~ll  191 (1052)
                      .++++..        +...-|.+|...+....
T Consensus       144 ~~~r~~~--------v~~~~q~~~~~e~~~~~  167 (180)
T COG2453         144 RRRRPGA--------VVTEIQHLFELEQELFR  167 (180)
T ss_pred             HhcCCcc--------cccHHHHHHHHHHHHHH
Confidence            5443211        14677888777666543

>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity

Probab=99.03  E-value=1e-09  Score=108.22  Aligned_cols=122  Identities=17%  Similarity=0.162  Sum_probs=86.2

Q ss_pred             HHHHhhhCCCCcEEEEeecCCCccchhhhhhcccCcEEeeCCCCCCCCCCChHHHHHHHHHHHHHHHhhCCCccEEEEEe
Q 001565           48 LTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHS  127 (1052)
Q Consensus        48 ~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~s~f~~~V~~yP~~d~g~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHC  127 (1052)
                      ..+|++..   =-.|.|++.+....   ......+...++++..|++.- ...+.+..+++.|+.+...+.+   |+|||
T Consensus        11 ~~~l~~~~---I~~Vin~~~~~~~~---~~~~~~~~~~~~i~~~D~~~~-~~~~~~~~~~~~i~~~~~~~~~---VlVHC   80 (133)
T PF00782_consen   11 IAFLKNLG---ITHVINLQEECPNP---YFYKPEGIEYLRIPIDDDPEE-PILEHLDQAVEFIENAISEGGK---VLVHC   80 (133)
T ss_dssp             HHHHHHTT---EEEEEECSSSSSTS---HHHTTTTSEEEEEEEESSTTS-HGGGGHHHHHHHHHHHHHTTSE---EEEEE
T ss_pred             HHHHHHCC---CCEEEEccCCCcCc---hhcccCCCEEEEEEecCCCCc-chHHHHHHHHHhhhhhhcccce---eEEEe
Confidence            45565553   23688999875431   112344556667777774333 3578888888888888776665   99999


Q ss_pred             cCCCcchHHHHHHHHHHHhcCCccHHHHHHHHHHhcCccccccCCCCCCCchHHHHHHHHHH
Q 001565          128 ERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGFLQLLSPLNPFPSQLRYLQYVAR  189 (1052)
Q Consensus       128 k~GkgRt~g~mia~yLly~~~~~~~~~Al~~~~k~~~~~~~~~~s~~n~~PSQ~RYV~Yf~~  189 (1052)
                      .+|.+|+ |+++|||||+.+.+ +.++|++++.++++ .+       +..+.|+++|.-|++
T Consensus        81 ~~G~~RS-~~v~~ayLm~~~~~-~~~~A~~~v~~~rp-~~-------~~~~~~~~~L~~~e~  132 (133)
T PF00782_consen   81 KAGLSRS-GAVAAAYLMKKNGM-SLEEAIEYVRSRRP-QI-------NPNPSFIRQLYEYEK  132 (133)
T ss_dssp             SSSSSHH-HHHHHHHHHHHHTS-SHHHHHHHHHHHST-TS-------THHHHHHHHHHHHHH
T ss_pred             CCCcccc-hHHHHHHHHHHcCC-CHHHHHHHHHHHCC-CC-------CCCHHHHHHHHHhhc
Confidence            9999997 99999999998888 66679999965442 21       134679999987764

Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....

>PHA03247 large tegument protein UL36; Provisional

Probab=99.01  E-value=1.8e-06  Score=113.38  Aligned_cols=11  Identities=18%  Similarity=0.761  Sum_probs=7.3

Q ss_pred             ccCCCcccccc
Q 001565          920 AMQGSLWADSQ  930 (1052)
Q Consensus       920 ~i~gTiW~~~~  930 (1052)
                      ..+.++|...+
T Consensus      3023 sl~q~~~~~~~ 3033 (3151)
T PHA03247       3023 SLKQTLWPPDD 3033 (3151)
T ss_pred             CcccCCCCCCC
Confidence            35778887665

>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases

Probab=98.98  E-value=7.7e-09  Score=102.43  Aligned_cols=121  Identities=17%  Similarity=0.052  Sum_probs=84.2

Q ss_pred             eeeeeCcEEEEecCCCCCCCCcccccccHHHHHHHHhhhCCCCcEEEEeecCCCccchhhhhhcccCcEEeeCCCCCCCC
Q 001565           16 LLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGC   95 (1052)
Q Consensus        16 LtYIT~RIiam~~~fPae~~~E~~YRN~i~dV~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~s~f~~~V~~yP~~d~g~   95 (1052)
                      ++.|+++|++-  ++++..-            ..+|++..   =-.|+||+++.+.    .....-+..+.+|++.|.+.
T Consensus         2 ~~~i~~~l~~g--~~~~~~d------------~~~L~~~g---i~~VI~l~~~~~~----~~~~~~~~~~~~~~~~D~~~   60 (139)
T cd00127           2 LSEITPGLYLG--SYPAASD------------KELLKKLG---ITHVLNVAKEVPN----ENLFLSDFNYLYVPILDLPS   60 (139)
T ss_pred             cCEEcCCeEEC--ChhHhcC------------HHHHHHcC---CCEEEEcccCCCC----cccCCCCceEEEEEceeCCC
Confidence            67899999988  6765321            33454432   2469999887653    12233456788888888764


Q ss_pred             CCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhcCCccHHHHHHHHHHhc
Q 001565           96 PLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREA  163 (1052)
Q Consensus        96 P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~~~~~~~Al~~~~k~~  163 (1052)
                      . .....+..+++.++..+..+..   |+|||.+|.+|+ |+|+++||++.+.+ +.++|++++.+.+
T Consensus        61 ~-~~~~~~~~~~~~i~~~~~~~~~---vlVHC~~G~~Rs-~~~~~~~l~~~~~~-~~~~a~~~vr~~r  122 (139)
T cd00127          61 Q-DISKYFDEAVDFIDDAREKGGK---VLVHCLAGVSRS-ATLVIAYLMKTLGL-SLREAYEFVKSRR  122 (139)
T ss_pred             C-ChHHHHHHHHHHHHHHHhcCCc---EEEECCCCCchh-HHHHHHHHHHHcCC-CHHHHHHHHHHHC
Confidence            4 2345566677777776665544   999999999997 99999999998876 5567999996543

Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.

>PRK12361 hypothetical protein; Provisional

Probab=98.93  E-value=1e-08  Score=124.67  Aligned_cols=143  Identities=15%  Similarity=0.159  Sum_probs=102.4

Q ss_pred             ceeeeeCcEEEEecCCCCCCCCcccccccHHHHHHHHhhhCCCCcEEEEeecCCCccchhhhhhcccCcEEeeCCCCCCC
Q 001565           15 GLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEG   94 (1052)
Q Consensus        15 DLtYIT~RIiam~~~fPae~~~E~~YRN~i~dV~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~s~f~~~V~~yP~~d~g   94 (1052)
                      -...|+++|++.  ++++..           | ..+|++ ++-  =.|.||++|....  ......-+.+..++|..|+.
T Consensus        94 ~~~~I~~~l~lG--~~~~a~-----------d-~~~L~~-~gI--~~Vldlt~E~~~~--~~~~~~~~i~yl~iPi~D~~  154 (547)
T PRK12361         94 AIQKIDENLYLG--CRLFPA-----------D-LEKLKS-NKI--TAILDVTAEFDGL--DWSLTEEDIDYLNIPILDHS  154 (547)
T ss_pred             cceEEcCcEEEC--CCCCcc-----------c-HHHHHH-cCC--CEEEEcccccccc--cccccccCceEEEeecCCCC
Confidence            468899999999  566422           1 234543 332  2477998653210  00111223567788888887


Q ss_pred             CCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhcCCccHHHHHHHHHHhcCccccccCCCC
Q 001565           95 CPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGFLQLLSPL  174 (1052)
Q Consensus        95 ~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~~~~~~~Al~~~~k~~~~~~~~~~s~~  174 (1052)
                      .|  .++.+.+.++.|++.++++..   |+|||++|.+|+ ++++|||||+.+...+.++|++++.++++.-.       
T Consensus       155 ~p--~~~~l~~a~~~i~~~~~~~~~---VlVHC~~G~sRS-a~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~-------  221 (547)
T PRK12361        155 VP--TLAQLNQAINWIHRQVRANKS---VVVHCALGRGRS-VLVLAAYLLCKDPDLTVEEVLQQIKQIRKTAR-------  221 (547)
T ss_pred             CC--cHHHHHHHHHHHHHHHHCCCe---EEEECCCCCCcH-HHHHHHHHHHhccCCCHHHHHHHHHHHCCCCC-------
Confidence            66  789999999999999888776   999999999996 99999999998766677889999965544321       


Q ss_pred             CCCchHHHHHHHHHHh
Q 001565          175 NPFPSQLRYLQYVARR  190 (1052)
Q Consensus       175 n~~PSQ~RYV~Yf~~l  190 (1052)
                       ..+.|+|+++.|.+.
T Consensus       222 -~n~~q~~~l~~~~~~  236 (547)
T PRK12361        222 -LNKRQLRALEKMLEQ  236 (547)
T ss_pred             -CCHHHHHHHHHHHHc
Confidence             457999999877653

>PHA03247 large tegument protein UL36; Provisional

Probab=98.77  E-value=9.7e-05  Score=98.03  Aligned_cols=9  Identities=11%  Similarity=-0.138  Sum_probs=4.3

Q ss_pred             HHHHHHHhh
Q 001565           45 HEILTELHE   53 (1052)
Q Consensus        45 ~dV~~~L~~   53 (1052)
                      ..|..||+.
T Consensus      1914 ~RvaA~mr~ 1922 (3151)
T PHA03247       1914 RRGEAYLRA 1922 (3151)
T ss_pred             HHHHHHHhh
Confidence            445555543

>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity

Probab=98.73  E-value=8.9e-08  Score=89.44  Aligned_cols=91  Identities=18%  Similarity=0.171  Sum_probs=64.4

Q ss_pred             eCCCCCCCCCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhcCCc-----cHHHHHHHHHH
Q 001565           87 DYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHS-----GERRTLEIVHR  161 (1052)
Q Consensus        87 ~yP~~d~g~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~~~-----~~~~Al~~~~k  161 (1052)
                      ...|.|++.|. ..+.+++|++.++.|......++-|+|||.+|+||+ |+++|+||++.+...     ...+++..+..
T Consensus         7 ~~~Wpd~~~P~-~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRt-g~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~   84 (105)
T smart00012        7 YTGWPDHGVPE-SPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRT-GTFVALDILLQQLESETGEVDIFQTVKELRK   84 (105)
T ss_pred             eCCCCCCCCCC-CHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChh-hHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Confidence            34778888873 348999999999999886543367999999999997 999999999887543     33445555543


Q ss_pred             hcCccccccCCCCCCCchHHHHHHHH
Q 001565          162 EAPKGFLQLLSPLNPFPSQLRYLQYV  187 (1052)
Q Consensus       162 ~~~~~~~~~~s~~n~~PSQ~RYV~Yf  187 (1052)
                      ++...+        ....|.+|++..
T Consensus        85 ~r~~~~--------~~~~q~~~~~~~  102 (105)
T smart00012       85 QRPGMV--------QTFEQYLFLYRA  102 (105)
T ss_pred             hhhhhC--------CcHHHHHHHHHH
Confidence            332221        466677766543

Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.

>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif

Probab=98.73  E-value=8.9e-08  Score=89.44  Aligned_cols=91  Identities=18%  Similarity=0.171  Sum_probs=64.4

Q ss_pred             eCCCCCCCCCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhcCCc-----cHHHHHHHHHH
Q 001565           87 DYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHS-----GERRTLEIVHR  161 (1052)
Q Consensus        87 ~yP~~d~g~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~~~-----~~~~Al~~~~k  161 (1052)
                      ...|.|++.|. ..+.+++|++.++.|......++-|+|||.+|+||+ |+++|+||++.+...     ...+++..+..
T Consensus         7 ~~~Wpd~~~P~-~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRt-g~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~   84 (105)
T smart00404        7 YTGWPDHGVPE-SPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRT-GTFVALDILLQQLESETGEVDIFQTVKELRK   84 (105)
T ss_pred             eCCCCCCCCCC-CHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChh-hHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Confidence            34778888873 348999999999999886543367999999999997 999999999887543     33445555543


Q ss_pred             hcCccccccCCCCCCCchHHHHHHHH
Q 001565          162 EAPKGFLQLLSPLNPFPSQLRYLQYV  187 (1052)
Q Consensus       162 ~~~~~~~~~~s~~n~~PSQ~RYV~Yf  187 (1052)
                      ++...+        ....|.+|++..
T Consensus        85 ~r~~~~--------~~~~q~~~~~~~  102 (105)
T smart00404       85 QRPGMV--------QTFEQYLFLYRA  102 (105)
T ss_pred             hhhhhC--------CcHHHHHHHHHH
Confidence            332221        466677766543

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=98.46  E-value=6.1e-07  Score=106.91  Aligned_cols=10  Identities=20%  Similarity=0.385  Sum_probs=4.9

Q ss_pred             cCCCcccccc
Q 001565          921 MQGSLWADSQ  930 (1052)
Q Consensus       921 i~gTiW~~~~  930 (1052)
                      ++.--|.++.
T Consensus       626 Mrr~nW~kI~  635 (1102)
T KOG1924|consen  626 MRRFNWSKIV  635 (1102)
T ss_pred             cccCCccccC
Confidence            3444455554

>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]

Probab=98.27  E-value=2.6e-05  Score=76.24  Aligned_cols=147  Identities=17%  Similarity=0.209  Sum_probs=96.7

Q ss_pred             CCCCCceeeeeCcEEEEecCCCCCCCCcccccccHHHHHHHHhhhCCCCcEEEEeecCCCccchhhhhhcccCcEEeeCC
Q 001565           10 KRPPDGLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYP   89 (1052)
Q Consensus        10 rk~~LDLtYIT~RIiam~~~fPae~~~E~~YRN~i~dV~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~s~f~~~V~~yP   89 (1052)
                      |-.+..++|=-=|.++.+  =|+.    .....+|+|+     ++|+  --.|...|+-.|+..   .+.+-+..|+|++
T Consensus         6 rPAPveIsy~~MrFLITh--nPtn----aTln~fieEL-----kKyg--vttvVRVCe~TYdt~---~lek~GI~Vldw~   69 (173)
T KOG2836|consen    6 RPAPVEISYKNMRFLITH--NPTN----ATLNKFIEEL-----KKYG--VTTVVRVCEPTYDTT---PLEKEGITVLDWP   69 (173)
T ss_pred             CCCCeeeeccceEEEEec--CCCc----hhHHHHHHHH-----HhcC--CeEEEEecccccCCc---hhhhcCceEeecc
Confidence            445567777777777773  4553    2333445444     2344  356788899887642   3456678999999


Q ss_pred             CCCCCCCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhcCCccHHHHHHHHHHhcCccccc
Q 001565           90 RQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGFLQ  169 (1052)
Q Consensus        90 ~~d~g~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~~~~~~~Al~~~~k~~~~~~~~  169 (1052)
                      |+|...|  +-+.+-....-+..-+.+.+. -.|+|||-+|-||. -+++|--||-+|+  .-|+|++|+..+++..|  
T Consensus        70 f~dg~pp--p~qvv~~w~~l~~~~f~e~p~-~cvavhcvaglgra-pvlvalalie~gm--kyedave~ir~krrga~--  141 (173)
T KOG2836|consen   70 FDDGAPP--PNQVVDDWLSLVKTKFREEPG-CCVAVHCVAGLGRA-PVLVALALIEAGM--KYEDAVEMIRQKRRGAI--  141 (173)
T ss_pred             cccCCCC--chHHHHHHHHHHHHHHhhCCC-CeEEEEeecccCcc-hHHHHHHHHHccc--cHHHHHHHHHHHhhccc--
Confidence            9995444  445544444444444556777 78999999999996 7888888888875  45779999964332222  


Q ss_pred             cCCCCCCCchHHHHHHHH
Q 001565          170 LLSPLNPFPSQLRYLQYV  187 (1052)
Q Consensus       170 ~~s~~n~~PSQ~RYV~Yf  187 (1052)
                             ---|+-||.-|
T Consensus       142 -------n~kql~~leky  152 (173)
T KOG2836|consen  142 -------NSKQLLYLEKY  152 (173)
T ss_pred             -------cHHHHHHHHHh
Confidence                   23477777644

>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways

Probab=98.20  E-value=5.5e-06  Score=89.64  Aligned_cols=93  Identities=16%  Similarity=0.168  Sum_probs=66.2

Q ss_pred             EEeeC-CCCCCCCCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhcC----CccHHHHHHH
Q 001565           84 TVLDY-PRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKL----HSGERRTLEI  158 (1052)
Q Consensus        84 ~V~~y-P~~d~g~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~----~~~~~~Al~~  158 (1052)
                      .+.+| .|.|++.|. ..+.+++|++.++.+...+.. +-|+|||.+|.||+ |+++|++++....    .-...+++..
T Consensus       131 ~~~~~~~W~d~~~p~-~~~~~~~~~~~v~~~~~~~~~-~pivVHC~~G~gRs-g~~~a~~~~~~~~~~~~~~~~~~~v~~  207 (231)
T cd00047         131 THFQYTGWPDHGVPE-SPDSLLDLLRKVRKSQQQPGS-GPIVVHCSAGVGRT-GTFIAIDILLQRLEAEGVVDIFQTVKE  207 (231)
T ss_pred             EEEeECCCCCCCccC-ChHHHHHHHHHHHHHhccCCC-CCeEEECCCCCCcc-chHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            34444 488888873 458899999999988754444 67999999999997 9999988876542    3344557776


Q ss_pred             HHHhcCccccccCCCCCCCchHHHHHHHH
Q 001565          159 VHREAPKGFLQLLSPLNPFPSQLRYLQYV  187 (1052)
Q Consensus       159 ~~k~~~~~~~~~~s~~n~~PSQ~RYV~Yf  187 (1052)
                      +.+++..-    +    ....|.+|++..
T Consensus       208 iR~~R~~~----v----~~~~Qy~f~~~~  228 (231)
T cd00047         208 LRSQRPGM----V----QTEEQYIFLYRA  228 (231)
T ss_pred             HHhccccc----c----CCHHHHHHHHHH
Confidence            64433222    1    578899998865

The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.

>PRK15375 pathogenicity island 1 effector protein StpP; Provisional

Probab=98.11  E-value=1.5e-05  Score=93.51  Aligned_cols=97  Identities=13%  Similarity=0.075  Sum_probs=63.9

Q ss_pred             cEEeeC-CCCCCCCCCChHHHHHHHHHHHHHHHhhCC------CccEEEEEecCCCcchHHHHHHHHHHHhcCCccHHHH
Q 001565           83 VTVLDY-PRQYEGCPLLPMSLIQHFLRVCEHWLLLGD------HQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRT  155 (1052)
Q Consensus        83 ~~V~~y-P~~d~g~P~p~L~~L~~~c~~~~~WL~~d~------~~NVvvVHCk~GkgRt~g~mia~yLly~~~~~~~~~A  155 (1052)
                      +.+++| -|.|||+| ..-+.|++|.+.++.|-..+.      +....||||.||-||| |++|||+++......+-++.
T Consensus       423 V~QFHyTnWPDHGVP-pST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRT-GTFIAi~llk~~~~~sle~I  500 (535)
T PRK15375        423 IPVLHVKNWPDHQPL-PSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRT-GTMAAALVLKDNPHSNLEQV  500 (535)
T ss_pred             EEEEEeCCCCCCCCC-CChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchH-HHHHHHHHHhccccCCHHHH
Confidence            345555 78999987 345668889888887743221      1024589999999998 99999999875555566667


Q ss_pred             HHHHHHhcCccccccCCCCCCCchHHHHHHHHH
Q 001565          156 LEIVHREAPKGFLQLLSPLNPFPSQLRYLQYVA  188 (1052)
Q Consensus       156 l~~~~k~~~~~~~~~~s~~n~~PSQ~RYV~Yf~  188 (1052)
                      +..+..++..   ..|    ...-|.-.+.-+.
T Consensus       501 V~dlR~qRng---~MV----Qt~eQy~~l~~~~  526 (535)
T PRK15375        501 RADFRNSRNN---RML----EDASQFVQLKAMQ  526 (535)
T ss_pred             HHHHHhcCCc---ccc----ccHHHHHHHHHHH
Confidence            7766433221   123    4666665555443

>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain

Probab=98.07  E-value=2.1e-05  Score=86.74  Aligned_cols=87  Identities=14%  Similarity=0.120  Sum_probs=63.0

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhcC----CccHHHHHHHHHHhcC
Q 001565           89 PRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKL----HSGERRTLEIVHREAP  164 (1052)
Q Consensus        89 P~~d~g~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~----~~~~~~Al~~~~k~~~  164 (1052)
                      .|.|++.|. ..+.+++|++.++.+.... . +-|+|||.+|.||+ |+++|+++++..+    .-...+++..+.+++.
T Consensus       165 ~W~d~~~P~-~~~~~~~~i~~v~~~~~~~-~-~pivVHC~~G~gRs-g~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R~  240 (258)
T smart00194      165 NWPDHGVPE-SPKSILDLVRAVRKSQSTS-T-GPIVVHCSAGVGRT-GTFIAIDILLQQLEAGKEVDIFEIVKELRSQRP  240 (258)
T ss_pred             CCCCCCCCC-CHHHHHHHHHHHHHhhccC-C-CCEEEEeCCCCCcc-chhhHHHHHHHHHHHcCCCCHHHHHHHHHhccc
Confidence            688888873 6788999999999987642 2 56999999999998 9999998876542    2334556766644332


Q ss_pred             ccccccCCCCCCCchHHHHHHHH
Q 001565          165 KGFLQLLSPLNPFPSQLRYLQYV  187 (1052)
Q Consensus       165 ~~~~~~~s~~n~~PSQ~RYV~Yf  187 (1052)
                      .-        +...-|.+|++..
T Consensus       241 ~~--------v~~~~Qy~f~~~~  255 (258)
T smart00194      241 GM--------VQTEEQYIFLYRA  255 (258)
T ss_pred             cc--------cCCHHHHHHHHHH
Confidence            22        2678898888653

>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity

Probab=97.94  E-value=2.9e-05  Score=83.28  Aligned_cols=92  Identities=16%  Similarity=0.201  Sum_probs=65.4

Q ss_pred             EEeeC-CCCCCCCCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhcCCc----cHHHHHHH
Q 001565           84 TVLDY-PRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHS----GERRTLEI  158 (1052)
Q Consensus        84 ~V~~y-P~~d~g~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~~~----~~~~Al~~  158 (1052)
                      .+.+| .|.+++.| ...+.++.|++.+..|. .+.. +-++|||.+|.||+ |+++|+.+++..+..    +-.+++..
T Consensus       136 ~~~~~~~W~~~~~P-~~~~~~~~~~~~v~~~~-~~~~-~pivVhc~~G~gRs-g~f~~~~~~~~~~~~~~~~~v~~~~~~  211 (235)
T PF00102_consen  136 THFHYTNWPDDGVP-PSPESFLDFIRKVNKSK-DDPN-GPIVVHCSDGVGRS-GTFCAIDILIEQLKKEGEVDVFEIVKK  211 (235)
T ss_dssp             EEEEEESSSSSSSG-SSSHHHHHHHHHHHHHH-STTS-SEEEEESSSSSHHH-HHHHHHHHHHHHHHHHSEECHHHHHHH
T ss_pred             cceeeeeccccccc-cccchhhhhhhhccccc-cCCc-cceEeecccccccc-cccccchhhccccccccchhhHHHHHH
Confidence            44444 88888887 46899999999999998 3444 78999999999997 999998888776543    33445554


Q ss_pred             HHHhcCccccccCCCCCCCchHHHHHHHH
Q 001565          159 VHREAPKGFLQLLSPLNPFPSQLRYLQYV  187 (1052)
Q Consensus       159 ~~k~~~~~~~~~~s~~n~~PSQ~RYV~Yf  187 (1052)
                      +.+++.        +......|.+|+++.
T Consensus       212 lR~~R~--------~~i~~~~qy~f~~~~  232 (235)
T PF00102_consen  212 LRQQRP--------GAIQSPEQYRFCYMA  232 (235)
T ss_dssp             HHTTST--------TSSSSHHHHHHHHHH
T ss_pred             HHhhCC--------CccCCHHHHHHHHHH
Confidence            433222        122577787777764

Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....

>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]

Probab=97.80  E-value=3.2e-05  Score=88.09  Aligned_cols=117  Identities=19%  Similarity=0.209  Sum_probs=72.3

Q ss_pred             cEEEEeecCCCccchhhhhhcccCc----------EEeeC---CCCCCCCCCChHHHHHHHHHHHHHHHhhCCCccEEEE
Q 001565           59 AFLAFNFREGEKQSEFAEILCEYDV----------TVLDY---PRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILL  125 (1052)
Q Consensus        59 ~y~V~NLs~~~~~s~~~~~~s~f~~----------~V~~y---P~~d~g~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvV  125 (1052)
                      ++.|=|..++...   .|.+.+|.+          .|.+|   -|.|||||+ .-.-+++|+.+++.=-..=...--|||
T Consensus       381 ~~~v~~v~E~~t~---dY~LR~l~vs~~~~g~~~R~I~~yh~~tWPDHGvP~-dPg~vLnFLe~V~~rq~~l~~AgpIvV  456 (600)
T KOG0790|consen  381 VMRVRNVKESDTH---DYTLRELKVSKLGNGNLEREIWHYHYLTWPDHGVPS-DPGGVLNFLEEVNHRQESLMDAGPIVV  456 (600)
T ss_pred             ceEEEeccccccc---cceehheeeccccCCcchhhhhhhheeecccCCCcC-CccHHHHHHHHhhhhhccccccCcEEE
Confidence            5889898876432   122333221          24444   689999994 667888899998743221111124999


Q ss_pred             EecCCCcchHHHHHH--HHH--HHhcCCc---cHHHHHHHHHHhcCccccccCCCCCCCchHHHHHHHHH
Q 001565          126 HSERGGWPLLAFLLA--SLL--IFRKLHS---GERRTLEIVHREAPKGFLQLLSPLNPFPSQLRYLQYVA  188 (1052)
Q Consensus       126 HCk~GkgRt~g~mia--~yL--ly~~~~~---~~~~Al~~~~k~~~~~~~~~~s~~n~~PSQ~RYV~Yf~  188 (1052)
                      ||.||-||| |++|.  ++|  |-.+...   ...++++|+..+        +||++.+=.|-|||+|--
T Consensus       457 HCSAGIGrT-GTfiViD~lld~I~~~Gldc~iDi~ktIqmVRsq--------RSGmVQTEaQYkFiY~Av  517 (600)
T KOG0790|consen  457 HCSAGIGRT-GTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRSQ--------RSGMVQTEAQYKFIYVAV  517 (600)
T ss_pred             EccCCcCCc-ceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHHH--------hcchhhhHHhHHHHHHHH
Confidence            999999998 87655  333  2222232   246677777432        244557788999998753

>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity

Probab=97.78  E-value=0.00011  Score=76.11  Aligned_cols=123  Identities=14%  Similarity=0.134  Sum_probs=61.4

Q ss_pred             HHHHHhhhCCCCcEEEEeecCCCccchhhhhhcccCcEEeeCCCCCCCCC--CChHHHHHHHHHHHHHHHhhCCCccEEE
Q 001565           47 ILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGCP--LLPMSLIQHFLRVCEHWLLLGDHQNVIL  124 (1052)
Q Consensus        47 V~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~s~f~~~V~~yP~~d~g~P--~p~L~~L~~~c~~~~~WL~~d~~~NVvv  124 (1052)
                      -..||++.+=.   .|.||+.+....++..-....+.++.+++......+  ...-+.+.++++.|   |  |..+.=|+
T Consensus        24 n~~fL~~L~LK---TII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~i---l--d~~n~PvL   95 (164)
T PF03162_consen   24 NFPFLERLGLK---TIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEII---L--DPRNYPVL   95 (164)
T ss_dssp             HHHHHHHHT-S---EEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHHH---H---GGG-SEE
T ss_pred             hHHHHHHCCCc---eEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHHH---h--CCCCCCEE
Confidence            35688886544   488999876543332223456778888866544321  01344454444433   2  22224589


Q ss_pred             EEecCCCcchHHHHHHHHHHHhcCCccHHHHHHHHHHhcCccccccCCCCCCCchHHHHHHHHHH
Q 001565          125 LHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGFLQLLSPLNPFPSQLRYLQYVAR  189 (1052)
Q Consensus       125 VHCk~GkgRt~g~mia~yLly~~~~~~~~~Al~~~~k~~~~~~~~~~s~~n~~PSQ~RYV~Yf~~  189 (1052)
                      |||+.|+-|| |+|||||=.+. .|+- ..+++.|.+++..+.         .-.-++||+.|..
T Consensus        96 iHC~~G~~rT-G~vvg~lRk~Q-~W~~-~~i~~Ey~~f~~~~~---------~~~~~~fIe~f~~  148 (164)
T PF03162_consen   96 IHCNHGKDRT-GLVVGCLRKLQ-GWSL-SSIFDEYRRFAGPKI---------RYLDEQFIELFDV  148 (164)
T ss_dssp             EE-SSSSSHH-HHHHHHHHHHT-TB-H-HHHHHHHHHHHGGG-----------HHHHHHHHT---
T ss_pred             EEeCCCCcch-hhHHHHHHHHc-CCCH-HHHHHHHHHhcCCCC---------cHHHHHHHHhcCc
Confidence            9999999998 99999997543 4544 448888866544321         3345677877764

Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=97.72  E-value=0.0008  Score=78.10  Aligned_cols=9  Identities=22%  Similarity=0.486  Sum_probs=4.0

Q ss_pred             hhhhhhhhh
Q 001565          976 VQLVELRRA  984 (1052)
Q Consensus       976 vslLD~KRa  984 (1052)
                      -++||.+++
T Consensus       538 ~~~m~ara~  546 (569)
T KOG3671|consen  538 ANLMDARAS  546 (569)
T ss_pred             HHHHHHHHH
Confidence            345554433

>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]

Probab=97.59  E-value=0.00018  Score=82.95  Aligned_cols=131  Identities=18%  Similarity=0.197  Sum_probs=86.1

Q ss_pred             CCCCCCCCcccccccHHHHHHHHhhhCCCCcEEEEeecCCCccchhhhhhcccCcEEeeCCCCCCC-CCCChHHHHHHHH
Q 001565           29 CFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEG-CPLLPMSLIQHFL  107 (1052)
Q Consensus        29 ~fPae~~~E~~YRN~i~dV~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~s~f~~~V~~yP~~d~g-~P~p~L~~L~~~c  107 (1052)
                      +|..... ++.+|-.-.+|...|.++--- =-++..|..-..++ ...++.+.+...+.--+..|+ +|  ..+.+..|.
T Consensus        36 ~~~~k~~-~~~~~f~~~dl~~~l~~~~~~-vgl~iDltnt~ryy-~~~~~~~~g~~Y~K~~c~g~~~vp--~~~~v~~fv  110 (393)
T KOG2386|consen   36 SYSTKTF-PGSQRFQPKDLFELLKEHNYK-VGLKIDLTNTLRYY-DKPELEERGVKYLKRNCPGRGVVP--RTELVDKFV  110 (393)
T ss_pred             CCCcCCC-CCccccCHHHHHHHHHhcCce-EEEEEeccceeeee-ccccccccceeEEEeccCCcccCC--CccchHHHH
Confidence            6766555 555588899999999886321 12233333211111 111122222222221222333 54  899999999


Q ss_pred             HHHHHHHh--hCCCccEEEEEecCCCcchHHHHHHHHHHHhcCCccHHHHHHHHHHhcCccc
Q 001565          108 RVCEHWLL--LGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGF  167 (1052)
Q Consensus       108 ~~~~~WL~--~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~~~~~~~Al~~~~k~~~~~~  167 (1052)
                      +.++.+..  ++.. -+|.|||..|+-|| |+|||+||+-.+.++ ..+|+.+|++.+..++
T Consensus       111 ~~v~~f~~~~~~~~-~LI~vhcthG~Nrt-gyLI~~yL~~~~~~s-~~~aik~f~~~r~~gi  169 (393)
T KOG2386|consen  111 KLVKGFVDDTKLDD-ELIGVHCTHGLNRT-GYLICAYLADVGGYS-SSEAIKRFADARPPGI  169 (393)
T ss_pred             HHHHHHHhcccCCC-CEEEEeCCCccccc-ceeeeeeeeeccCcc-HHHHHHHHHHhCCCcc
Confidence            99999999  6666 79999999999997 999999999999854 4559999987665554

>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]

Probab=97.54  E-value=0.00028  Score=88.06  Aligned_cols=89  Identities=18%  Similarity=0.095  Sum_probs=59.8

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHHHHHhh-CCCccEEEEEecCCCcchHHHHHHHHHHHh-cCCccHHHHHHHHHHhcCcc
Q 001565           89 PRQYEGCPLLPMSLIQHFLRVCEHWLLL-GDHQNVILLHSERGGWPLLAFLLASLLIFR-KLHSGERRTLEIVHREAPKG  166 (1052)
Q Consensus        89 P~~d~g~P~p~L~~L~~~c~~~~~WL~~-d~~~NVvvVHCk~GkgRt~g~mia~yLly~-~~~~~~~~Al~~~~k~~~~~  166 (1052)
                      -|.|||||- ..+..+.|+..|.+-=.. ++   =|||||.||.||| |++|++=++.+ -.....-+-++++...+-.|
T Consensus      1035 aWPDHg~P~-D~~~FL~FleevrsvR~~t~p---PilvHCSAGiGRT-GVlIl~e~~l~lle~Ne~vdi~divr~mR~QR 1109 (1144)
T KOG0792|consen 1035 AWPDHGVPD-DPNDFLDFLEEVRSVRRGTNP---PILVHCSAGIGRT-GVLILMETALCLLEHNEPVDILDIVRTMRDQR 1109 (1144)
T ss_pred             ccccCCCCC-ChHHHHHHHHHHHHHhccCCC---CeEEEccCCCCcc-eehHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence            689999994 888999999988764333 33   4999999999998 99998654333 33333344556653211111


Q ss_pred             ccccCCCCCCCchHHHHHHHH
Q 001565          167 FLQLLSPLNPFPSQLRYLQYV  187 (1052)
Q Consensus       167 ~~~~~s~~n~~PSQ~RYV~Yf  187 (1052)
                           ...+.+.+|-+||+-.
T Consensus      1110 -----~~mVQT~~QYkFVyev 1125 (1144)
T KOG0792|consen 1110 -----AMMVQTLSQYKFVYEV 1125 (1144)
T ss_pred             -----hhhccchHHhhHHHHH
Confidence                 1223688999998743

>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]

Probab=97.47  E-value=0.0015  Score=73.63  Aligned_cols=55  Identities=22%  Similarity=0.166  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhcCCccHHHHHHHHHHh
Q 001565          103 IQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHRE  162 (1052)
Q Consensus       103 L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~~~~~~~Al~~~~k~  162 (1052)
                      +-+.++.|+.-+..+.   .|+|||.+|..|+ ++++.||||+...++-.+ |++++..+
T Consensus       141 ~~~~~~fI~~a~~~~~---~vlVHC~~GvSRS-at~viAYlM~~~~~~l~~-A~~~vk~~  195 (285)
T KOG1716|consen  141 FPEAISFIEKAREKGG---KVLVHCQAGVSRS-ATLVIAYLMKYEGLSLED-AYELVKSR  195 (285)
T ss_pred             HHHHHHHHHHHHhCCC---eEEEEcCCccchh-HHHHHHHHHHHcCCCHHH-HHHHHHHh
Confidence            4444444544444444   4999999999996 899999999998886655 99999644

>PHA02742 protein tyrosine phosphatase; Provisional

Probab=97.26  E-value=0.00093  Score=75.86  Aligned_cols=89  Identities=13%  Similarity=0.106  Sum_probs=54.1

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHHHHHhhC-----CC----ccEEEEEecCCCcchHHHHHHHHHHHhcCC-c---cHHHH
Q 001565           89 PRQYEGCPLLPMSLIQHFLRVCEHWLLLG-----DH----QNVILLHSERGGWPLLAFLLASLLIFRKLH-S---GERRT  155 (1052)
Q Consensus        89 P~~d~g~P~p~L~~L~~~c~~~~~WL~~d-----~~----~NVvvVHCk~GkgRt~g~mia~yLly~~~~-~---~~~~A  155 (1052)
                      .|.|||+|. ....+++|++.+..|-...     .+    ..=+||||.+|.||| |+.+|...+....- .   .-.++
T Consensus       190 ~Wpd~gvP~-~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRT-GtF~aid~~i~~~~~~~~v~v~~~  267 (303)
T PHA02742        190 DWPHGGLPR-DPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLDRA-GAFCAIDICISKYNERAIIPLLSI  267 (303)
T ss_pred             CCCCCCcCC-CHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCchh-HHHHHHHHHHHHHHhcCCCCHHHH
Confidence            889999983 6678888998888764221     00    024899999999998 88877555443321 1   11234


Q ss_pred             HHHHHHhcCccccccCCCCCCCchHHHHHHHH
Q 001565          156 LEIVHREAPKGFLQLLSPLNPFPSQLRYLQYV  187 (1052)
Q Consensus       156 l~~~~k~~~~~~~~~~s~~n~~PSQ~RYV~Yf  187 (1052)
                      +..+.+++..        .+...-|-.|++..
T Consensus       268 V~~lR~qR~~--------~Vqt~~QY~F~y~~  291 (303)
T PHA02742        268 VRDLRKQRHN--------CLSLPQQYIFCYFI  291 (303)
T ss_pred             HHHHHhhccc--------ccCCHHHHHHHHHH
Confidence            4444322211        12567787776653

>PHA02747 protein tyrosine phosphatase; Provisional

Probab=97.26  E-value=0.0013  Score=75.09  Aligned_cols=91  Identities=10%  Similarity=0.049  Sum_probs=54.9

Q ss_pred             EEeeC---CCCCCCCCCChHHHHHHHHHHHHHHHhhCCC--------ccEEEEEecCCCcchHHHHHHHHHHHhcC----
Q 001565           84 TVLDY---PRQYEGCPLLPMSLIQHFLRVCEHWLLLGDH--------QNVILLHSERGGWPLLAFLLASLLIFRKL----  148 (1052)
Q Consensus        84 ~V~~y---P~~d~g~P~p~L~~L~~~c~~~~~WL~~d~~--------~NVvvVHCk~GkgRt~g~mia~yLly~~~----  148 (1052)
                      .|.+|   .|.|+|.|. ....+++|++.+..|-..-.+        ..=+||||.+|-||| |+.+|..++...+    
T Consensus       183 ~V~h~~y~~Wpd~~~P~-~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRt-Gtfcaidi~i~~l~~~~  260 (312)
T PHA02747        183 KISHFQCSEWFEDETPS-DHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSDGVGKT-GIFCAVDICLNQLVKRK  260 (312)
T ss_pred             EEEEEEECCCCCCCCCC-ChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEecCCCcch-hHHHHHHHHHHHHHhcC
Confidence            46665   888999883 466677788777666432111        024899999999998 8887765443322    


Q ss_pred             CccHHHHHHHHHHhcCccccccCCCCCCCchHHHHH
Q 001565          149 HSGERRTLEIVHREAPKGFLQLLSPLNPFPSQLRYL  184 (1052)
Q Consensus       149 ~~~~~~Al~~~~k~~~~~~~~~~s~~n~~PSQ~RYV  184 (1052)
                      .-...+++..+.+++..        .+...-|-.|+
T Consensus       261 ~v~v~~~V~~lR~qR~~--------~Vqt~~QY~F~  288 (312)
T PHA02747        261 AICLAKTAEKIREQRHA--------GIMNFDDYLFI  288 (312)
T ss_pred             CCCHHHHHHHHHhcccc--------ccCCHHHHHHH
Confidence            11223344444322221        12577888888

>PLN02727 NAD kinase

Probab=97.24  E-value=0.00096  Score=83.43  Aligned_cols=98  Identities=13%  Similarity=0.233  Sum_probs=66.7

Q ss_pred             ccc-c--cHHHHHHHHhhhCCCCcEEEEeecCCCccch-----hhhhhcccCcEEeeCCCCCCCCCCChHHHHHHHHHHH
Q 001565           39 MYQ-L--YLHEILTELHEEFPDSAFLAFNFREGEKQSE-----FAEILCEYDVTVLDYPRQYEGCPLLPMSLIQHFLRVC  110 (1052)
Q Consensus        39 ~YR-N--~i~dV~~~L~~~h~~~~y~V~NLs~~~~~s~-----~~~~~s~f~~~V~~yP~~d~g~P~p~L~~L~~~c~~~  110 (1052)
                      .|| +  .-+++..+.+.=+    =.|.||+.+....+     +.......+++++++|..+.+.|  +.+.|.+|.+.+
T Consensus       263 ~~rsgQpspe~la~LA~~Gf----KTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~ap--t~EqVe~fa~~l  336 (986)
T PLN02727        263 FWRGGQVTEEGLKWLLEKGF----KTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTAP--SAEQVEKFASLV  336 (986)
T ss_pred             EEEeCCCCHHHHHHHHHCCC----eEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCCC--CHHHHHHHHHHH
Confidence            466 2  3455655444322    34899986544211     11122346789999998776665  789999888777


Q ss_pred             HHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhcC
Q 001565          111 EHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKL  148 (1052)
Q Consensus       111 ~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~  148 (1052)
                      ++  ....-   |+|||+.|.+|+ |+|+||||.|.-.
T Consensus       337 ~~--slpkP---VLvHCKSGarRA-GamvA~yl~~~~~  368 (986)
T PLN02727        337 SD--SSKKP---IYLHSKEGVWRT-SAMVSRWKQYMTR  368 (986)
T ss_pred             Hh--hcCCC---EEEECCCCCchH-HHHHHHHHHHHcc
Confidence            44  23334   999999999997 9999999999754

>PHA02746 protein tyrosine phosphatase; Provisional

Probab=97.16  E-value=0.0025  Score=73.05  Aligned_cols=59  Identities=12%  Similarity=0.040  Sum_probs=42.1

Q ss_pred             EEeeC---CCCCCCCCCChHHHHHHHHHHHHHHHhh-------CC-CccEEEEEecCCCcchHHHHHHHHHH
Q 001565           84 TVLDY---PRQYEGCPLLPMSLIQHFLRVCEHWLLL-------GD-HQNVILLHSERGGWPLLAFLLASLLI  144 (1052)
Q Consensus        84 ~V~~y---P~~d~g~P~p~L~~L~~~c~~~~~WL~~-------d~-~~NVvvVHCk~GkgRt~g~mia~yLl  144 (1052)
                      .|.+|   -|.|||.|. ....+++|++.+..|-..       +. ...=+||||.+|.||| |+.+|...+
T Consensus       201 ~V~h~~y~~Wpd~gvP~-~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRT-Gtfcaid~~  270 (323)
T PHA02746        201 EIHHFWFPDWPDNGIPT-GMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSAGIGRA-GTFCAIDNA  270 (323)
T ss_pred             EEEEEEECCCCCCCcCC-CHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEEcCCCCCcc-hhHHHHHHH
Confidence            45554   888999883 577888898888877431       11 1135899999999998 888775443

>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B

Probab=97.07  E-value=0.00054  Score=69.85  Aligned_cols=60  Identities=15%  Similarity=0.156  Sum_probs=38.1

Q ss_pred             cccCcEEeeCCCCCCCCCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHH
Q 001565           79 CEYDVTVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLI  144 (1052)
Q Consensus        79 s~f~~~V~~yP~~d~g~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLl  144 (1052)
                      ..++....++|..||.+|  .-+.+-.|+..+.+. -.  . --+++||.+|+|||..+|+.+.|+
T Consensus        89 ~~~g~~Y~Ripitd~~~P--~~~~iD~fi~~v~~~-p~--~-~~l~fhC~~G~GRTTt~Mv~~~li  148 (149)
T PF14566_consen   89 EGNGLRYYRIPITDHQAP--DPEDIDAFINFVKSL-PK--D-TWLHFHCQAGRGRTTTFMVMYDLI  148 (149)
T ss_dssp             HHTT-EEEEEEE-TTS-----HHHHHHHHHHHHTS--T--T--EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred             hcCCceEEEEeCCCcCCC--CHHHHHHHHHHHHhC-CC--C-CeEEEECCCCCCHHHHHHHHHHHh
Confidence            456778888899999998  456666666555554 22  2 569999999999987777666665

...

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=97.04  E-value=0.02  Score=66.99  Aligned_cols=8  Identities=25%  Similarity=0.127  Sum_probs=3.4

Q ss_pred             HHHHHHHH
Q 001565          137 FLLASLLI  144 (1052)
Q Consensus       137 ~mia~yLl  144 (1052)
                      .++.+.||
T Consensus        14 ~n~~S~lL   21 (569)
T KOG3671|consen   14 PNVPSTLL   21 (569)
T ss_pred             CCCccccc
Confidence            44444443

>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]

Probab=97.03  E-value=0.0012  Score=74.83  Aligned_cols=99  Identities=12%  Similarity=0.059  Sum_probs=65.8

Q ss_pred             cccCcEEeeCCCCCCCCCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHH-HHHhcCCccHHHHHH
Q 001565           79 CEYDVTVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASL-LIFRKLHSGERRTLE  157 (1052)
Q Consensus        79 s~f~~~V~~yP~~d~g~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~y-Lly~~~~~~~~~Al~  157 (1052)
                      +++-..+..+-|.|||.| .+...|.+|.+....|+..+.  -.++|||.+|-||| ||.||-- |+|.-......+-..
T Consensus       249 sr~ir~f~y~~wPd~gvp-~~~~sl~~f~~~~r~~~~~~~--~p~iVhCSAGVgRT-GTFiald~LLqq~~~~~~vdi~~  324 (374)
T KOG0791|consen  249 SRKIRHFHYTAWPDFGVP-SSTESLLQFVRMVRQSLDTSK--GPTIVHCSAGVGRT-GTFIALDRLLQQIDSEETVDIFG  324 (374)
T ss_pred             cceeEEEEEeeccccCCC-CCchhHHHHHHHHHhhcccCC--CceeEEeecccccc-cchHhHHHHHHHhcccccccHHH
Confidence            344445666799999999 578999999999999999984  58999999999998 8888754 455443333333334


Q ss_pred             HHHHhcCccccccCCCCCCCchHHHHHHH
Q 001565          158 IVHREAPKGFLQLLSPLNPFPSQLRYLQY  186 (1052)
Q Consensus       158 ~~~k~~~~~~~~~~s~~n~~PSQ~RYV~Y  186 (1052)
                      .+...+..|. +.|    ..=-|.=||++
T Consensus       325 iv~~lR~~R~-~mV----qte~Qyvfl~~  348 (374)
T KOG0791|consen  325 VVLELRSARM-LMV----QTEDQYVFLHQ  348 (374)
T ss_pred             HHHHhhhccc-ccc----chHHHHHHHHH
Confidence            4443333331 233    33345555544

>PHA02740 protein tyrosine phosphatase; Provisional

Probab=96.96  E-value=0.003  Score=71.59  Aligned_cols=93  Identities=10%  Similarity=0.059  Sum_probs=55.0

Q ss_pred             EEeeC---CCCCCCCCCChHHHHHHHHHHHHHHHh-------hCCCccEEEEEecCCCcchHHHHHHHHHHHhcCC-ccH
Q 001565           84 TVLDY---PRQYEGCPLLPMSLIQHFLRVCEHWLL-------LGDHQNVILLHSERGGWPLLAFLLASLLIFRKLH-SGE  152 (1052)
Q Consensus        84 ~V~~y---P~~d~g~P~p~L~~L~~~c~~~~~WL~-------~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~~-~~~  152 (1052)
                      .|.+|   -|.|||.|. ....+++|++.+..+..       .+.. .=+||||.+|-||| |+.+|...+-..+. .+.
T Consensus       177 ~V~Hfqyt~WPd~gvP~-~~~~~l~fi~~V~~~~~~~~~~~~~~~~-~PIVVHCSaGvGRT-GtFcaiDi~l~~~~~~~~  253 (298)
T PHA02740        177 KISHFQYTAWPADGFSH-DPDAFIDFFCNIDDLCADLEKHKADGKI-APIIIDCIDGISSS-AVFCVFDICATEFDKTGM  253 (298)
T ss_pred             EEEEEeecCCCCCCcCC-CHHHHHHHHHHHHHHHHHHHHhhccCCC-CCEEEECCCCCchh-HHHHHHHHHHHHHHhcCc
Confidence            46665   788999884 56777888777765431       1112 35899999999998 88877554433221 111


Q ss_pred             ---HHHHHHHHHhcCccccccCCCCCCCchHHHHHHHH
Q 001565          153 ---RRTLEIVHREAPKGFLQLLSPLNPFPSQLRYLQYV  187 (1052)
Q Consensus       153 ---~~Al~~~~k~~~~~~~~~~s~~n~~PSQ~RYV~Yf  187 (1052)
                         .+++..+.++   |     -+.+....|-.|++..
T Consensus       254 vdi~~~V~~lR~q---R-----~~~Vqt~~QY~F~y~~  283 (298)
T PHA02740        254 LSIANALKKVRQK---K-----YGCMNCLDDYVFCYHL  283 (298)
T ss_pred             ccHHHHHHHHHhh---C-----ccccCCHHHHHHHHHH
Confidence               2233333222   2     1222578888877653

>PHA02738 hypothetical protein; Provisional

Probab=96.95  E-value=0.0029  Score=72.37  Aligned_cols=94  Identities=12%  Similarity=0.036  Sum_probs=55.9

Q ss_pred             EEeeC---CCCCCCCCCChHHHHHHHHHHHHHHHhh-------CCC----ccEEEEEecCCCcchHHHHHHHHHHHhcCC
Q 001565           84 TVLDY---PRQYEGCPLLPMSLIQHFLRVCEHWLLL-------GDH----QNVILLHSERGGWPLLAFLLASLLIFRKLH  149 (1052)
Q Consensus        84 ~V~~y---P~~d~g~P~p~L~~L~~~c~~~~~WL~~-------d~~----~NVvvVHCk~GkgRt~g~mia~yLly~~~~  149 (1052)
                      .|.+|   .|.|+|+|. ....+++|++.+..+-..       ...    ..=+||||.+|.||| |+.+|.-.+...+-
T Consensus       178 ~V~h~~y~~Wpd~gvP~-~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIVVHCs~GiGRt-GtFcaidi~i~~~~  255 (320)
T PHA02738        178 TVTHFNFTAWPDHDVPK-NTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCNAGLGRT-PCYCVVDISISRFD  255 (320)
T ss_pred             EEEEEEECCCCCCCCCC-CHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeEEEcCCCCChh-hhhhHHHHHHHHHH
Confidence            35554   788899883 566788888888765321       111    024899999999998 88766554433321


Q ss_pred             -c---cHHHHHHHHHHhcCccccccCCCCCCCchHHHHHHHH
Q 001565          150 -S---GERRTLEIVHREAPKGFLQLLSPLNPFPSQLRYLQYV  187 (1052)
Q Consensus       150 -~---~~~~Al~~~~k~~~~~~~~~~s~~n~~PSQ~RYV~Yf  187 (1052)
                       .   .-.+++..+.+++.        +.+....|-.|++..
T Consensus       256 ~~~~vdv~~~V~~lR~qR~--------~~vqt~~QY~F~y~~  289 (320)
T PHA02738        256 ACATVSIPSIVSSIRNQRY--------YSLFIPFQYFFCYRA  289 (320)
T ss_pred             hcCCcCHHHHHHHHHhhhh--------hccCCHHHHHHHHHH
Confidence             1   12223443332221        122578888887654

>TIGR01244 conserved hypothetical protein TIGR01244

Probab=96.93  E-value=0.0078  Score=60.34  Aligned_cols=115  Identities=12%  Similarity=-0.008  Sum_probs=66.1

Q ss_pred             ceeeeeCcEEEEecCCCCCCCCcccccccHHHHHHHHhhhCCCCcEEEEeecCCCcc-chh-h----hhhcccCcEEeeC
Q 001565           15 GLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQ-SEF-A----EILCEYDVTVLDY   88 (1052)
Q Consensus        15 DLtYIT~RIiam~~~fPae~~~E~~YRN~i~dV~~~L~~~h~~~~y~V~NLs~~~~~-s~~-~----~~~s~f~~~V~~y   88 (1052)
                      |+.-|++++++.  +=++           -+|+ ..|.+..   ==.|+||+..... .+- .    ......++.++++
T Consensus         1 ~~~~i~~~~~~s--~qlt-----------~~d~-~~L~~~G---iktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~i   63 (135)
T TIGR01244         1 DIRKLTEHLYVS--PQLT-----------KADA-AQAAQLG---FKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQ   63 (135)
T ss_pred             CceEcCCCeeEc--CCCC-----------HHHH-HHHHHCC---CcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEe
Confidence            345677887777  2222           2233 3454432   2468999743211 110 0    0112357788888


Q ss_pred             CCCCCCCCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhcCCccHHHHHHHH
Q 001565           89 PRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIV  159 (1052)
Q Consensus        89 P~~d~g~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~~~~~~~Al~~~  159 (1052)
                      |....+.   +-+.+..|.+.++   ..+.-   |++||+.|+ |+ |++.+-++.+.| + ..+++++..
T Consensus        64 Pv~~~~~---~~~~v~~f~~~~~---~~~~p---vL~HC~sG~-Rt-~~l~al~~~~~g-~-~~~~i~~~~  121 (135)
T TIGR01244        64 PVTAGDI---TPDDVETFRAAIG---AAEGP---VLAYCRSGT-RS-SLLWGFRQAAEG-V-PVEEIVRRA  121 (135)
T ss_pred             ecCCCCC---CHHHHHHHHHHHH---hCCCC---EEEEcCCCh-HH-HHHHHHHHHHcC-C-CHHHHHHHH
Confidence            7765432   5667777766665   23333   999999999 96 777666666655 3 455577765

No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.

>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]

Probab=95.69  E-value=0.082  Score=54.41  Aligned_cols=117  Identities=11%  Similarity=0.006  Sum_probs=66.8

Q ss_pred             CceeeeeCcEEEEecCCCCCCCCcccccccHHHHHHHHhhhCCCCcEEEEeecCCCccchhhhhhcccCcEEeeCCCCCC
Q 001565           14 DGLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQYE   93 (1052)
Q Consensus        14 LDLtYIT~RIiam~~~fPae~~~E~~YRN~i~dV~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~s~f~~~V~~yP~~d~   93 (1052)
                      -.|+.||+-++... |--+              +.+.|-++++-  -+|.|.+-|.-. ....+     .+.+..+.+|+
T Consensus        15 ~~~SqIt~sLfl~~-GvaA--------------~~k~~l~~~~I--t~IiNat~E~pn-~~l~~-----~qy~kv~~~D~   71 (198)
T KOG1718|consen   15 GGMSQITPSLFLSN-GVAA--------------NDKLLLKKRKI--TCIINATTEVPN-TSLPD-----IQYMKVPLEDT   71 (198)
T ss_pred             cchhhcCcceeEec-cccc--------------cCHHHHHhcCc--eEEEEcccCCCC-ccCCC-----ceeEEEEcccC
Confidence            46889999988773 2221              12233344543  689998876543 11112     23334445554


Q ss_pred             CCCCChHHHHH-HHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhcCCccHHHHHHHHH
Q 001565           94 GCPLLPMSLIQ-HFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVH  160 (1052)
Q Consensus        94 g~P~p~L~~L~-~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~~~~~~~Al~~~~  160 (1052)
                      --  -.|..-+ .+-..|++--..+.+   .+|||.||-.|. |.++-||||..... +-.||-.++.
T Consensus        72 p~--~~l~~hfD~vAD~I~~v~~~gG~---TLvHC~AGVSRS-AsLClAYLmK~~~m-sLreAy~~vK  132 (198)
T KOG1718|consen   72 PQ--ARLYDHFDPVADKIHSVIMRGGK---TLVHCVAGVSRS-ASLCLAYLMKYHCM-SLREAYHWVK  132 (198)
T ss_pred             Cc--chhhhhhhHHHHHHHHHHhcCCc---EEEEEccccchh-HHHHHHHHHHHccc-hHHHHHHHHH
Confidence            11  1222222 222334444455666   899999999996 88888998876543 4455777773

>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]

Probab=95.62  E-value=0.027  Score=61.42  Aligned_cols=72  Identities=10%  Similarity=0.030  Sum_probs=48.1

Q ss_pred             EEeeCCCCCCCCCCChHHH-HHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhcCCccHHHHHHHHHHh
Q 001565           84 TVLDYPRQYEGCPLLPMSL-IQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHRE  162 (1052)
Q Consensus        84 ~V~~yP~~d~g~P~p~L~~-L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~~~~~~~Al~~~~k~  162 (1052)
                      +...++..||-.-  .|.. +-+.+..|++-.+++-.   |+|||.+|-.|. .|+..+|||..-.+ +-.+|.+++.++
T Consensus       219 ~YkqipisDh~Sq--nls~ffpEAIsfIdeArsk~cg---vLVHClaGISRS-vTvtvaYLMqkl~l-slndAyd~Vk~k  291 (343)
T KOG1717|consen  219 IYKQIPISDHASQ--NLSQFFPEAISFIDEARSKNCG---VLVHCLAGISRS-VTVTVAYLMQKLNL-SLNDAYDFVKHK  291 (343)
T ss_pred             eEEeeeccchhhh--hhhhhhHHHHHHHHHhhccCCc---EEEeeeccccch-hHHHHHHHHHHhcc-chhhHHHHHHHh
Confidence            3556788887332  2322 22344444444444444   999999999996 89999999977665 445699999643

>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]

Probab=95.61  E-value=0.017  Score=63.21  Aligned_cols=42  Identities=17%  Similarity=0.150  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHhhC-CCccEEEEEecCCCcchHHHHHHHHHHHh
Q 001565          103 IQHFLRVCEHWLLLG-DHQNVILLHSERGGWPLLAFLLASLLIFR  146 (1052)
Q Consensus       103 L~~~c~~~~~WL~~d-~~~NVvvVHCk~GkgRt~g~mia~yLly~  146 (1052)
                      |.++|+.++.....- .. +.++|||.||-||| ||.||-..+.+
T Consensus       201 i~sl~~~~~sl~~sp~~t-~piiVHCSAGvGRT-GTFIalD~ll~  243 (302)
T COG5599         201 IRSLTEVIHSLNDSPVRT-GPIIVHCSAGVGRT-GTFIALDILLR  243 (302)
T ss_pred             HHHHHHHHHHhhcCcCCC-CCEEEEeccCCCCc-ceeeeHHHHHh
Confidence            444455555544332 34 78999999999999 99888654443

>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B

Probab=95.47  E-value=0.02  Score=59.11  Aligned_cols=34  Identities=21%  Similarity=0.172  Sum_probs=22.6

Q ss_pred             HHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhcC
Q 001565          112 HWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKL  148 (1052)
Q Consensus       112 ~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~  148 (1052)
                      .+|... . +-+++||.+||-|| |+++|-+|...|.
T Consensus       118 ~~l~~~-~-~p~l~HC~aGKDRT-G~~~alll~~lGV  151 (164)
T PF13350_consen  118 ELLADA-P-GPVLFHCTAGKDRT-GVVAALLLSLLGV  151 (164)
T ss_dssp             HHHH-T-T---EEEE-SSSSSHH-HHHHHHHHHHTT-
T ss_pred             HHhccC-C-CcEEEECCCCCccH-HHHHHHHHHHcCC
Confidence            344443 3 68999999999998 9988777776664

>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]

Probab=94.64  E-value=0.084  Score=62.13  Aligned_cols=55  Identities=22%  Similarity=0.155  Sum_probs=33.9

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhc
Q 001565           89 PRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRK  147 (1052)
Q Consensus        89 P~~d~g~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~  147 (1052)
                      -|.|+|.|. ....++.+++.  ..+....++.=++|||.+|.||+ |++++...+...
T Consensus       271 ~WPd~~~p~-~~~~~l~~~~~--~~~~~~~~~~P~vVhcsaG~gRt-gt~v~~~~~~~~  325 (415)
T KOG0789|consen  271 NWPDHGAPD-SVKSILPLLRQ--SVLELRPKQEPIEVHCSAGAGRA-GTLVLIEHALIE  325 (415)
T ss_pred             CCccccCCc-chHHHHHHHHh--hhhhhcCCCCCeEEECCCCCCcc-chHHHHHHHHHH
Confidence            566777773 24444445444  33333332245899999999998 888875544443

>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]

Probab=94.63  E-value=0.036  Score=70.62  Aligned_cols=46  Identities=17%  Similarity=0.211  Sum_probs=37.1

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHHHHH--hhCCCccEEEEEecCCCcchHHHHHH
Q 001565           89 PRQYEGCPLLPMSLIQHFLRVCEHWL--LLGDHQNVILLHSERGGWPLLAFLLA  140 (1052)
Q Consensus        89 P~~d~g~P~p~L~~L~~~c~~~~~WL--~~d~~~NVvvVHCk~GkgRt~g~mia  140 (1052)
                      .|.|||.|. .-.-|+.|.+.+..+-  .+++    +||||.||-||| |+.|+
T Consensus       702 ~Wpd~gvPe-~~t~lL~f~rrvk~~~p~~aGP----iVVHCSAGvGRT-G~fi~  749 (1087)
T KOG4228|consen  702 AWPDHGVPE-TPTGLLKFRRRVKTFNPPDAGP----IVVHCSAGVGRT-GCFIV  749 (1087)
T ss_pred             cCCCCCCcc-cchHHHHHHHHhccCCCcCCCC----EEEECCCCCCCc-ceEEE
Confidence            599999983 5678888999888876  4444    899999999998 77655

>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]

Probab=94.46  E-value=0.083  Score=58.52  Aligned_cols=31  Identities=13%  Similarity=0.030  Sum_probs=27.1

Q ss_pred             EEEEEecCCCcchHHHHHHHHHHHhcCCccHH
Q 001565          122 VILLHSERGGWPLLAFLLASLLIFRKLHSGER  153 (1052)
Q Consensus       122 VvvVHCk~GkgRt~g~mia~yLly~~~~~~~~  153 (1052)
                      =|++||++||-|| |+++|||+.+.+......
T Consensus       138 PvL~HC~~GkdRT-Gl~~al~r~~~~~~~~~v  168 (249)
T COG2365         138 PVLIHCTAGKDRT-GLVAALYRKLVGGSDETV  168 (249)
T ss_pred             CEEEecCCCCcch-HHHHHHHHHHhCCchhHH
Confidence            4899999999998 999999999998765543

>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]

Probab=94.41  E-value=0.024  Score=68.41  Aligned_cols=69  Identities=17%  Similarity=0.247  Sum_probs=54.6

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchHHHHHHHHHHHhcCCccHH-----HHHHHHHH
Q 001565           89 PRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGER-----RTLEIVHR  161 (1052)
Q Consensus        89 P~~d~g~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~g~mia~yLly~~~~~~~~-----~Al~~~~k  161 (1052)
                      -|.++|.|+ .-.-|++|=+.+.+.+.--.+  -|+|||.+|-||| ||-|.-=|+..++..|+.     .+|+++..
T Consensus       899 SWp~egvPa-sarslLdFRRKVNK~YRGRSc--pIiVH~sdGaGRT-G~YiliDmvl~Rm~kGakeIDIaATlEHlRD  972 (1004)
T KOG0793|consen  899 SWPDEGVPA-SARSLLDFRRKVNKCYRGRSC--PIIVHCSDGAGRT-GTYILIDMVLNRMAKGAKEIDIAATLEHLRD  972 (1004)
T ss_pred             cccccCCcc-chHHHHHHHHHhhhhccCCCC--ceEEEccCCCCcc-ceeeeHHHHHHHHhccchhhhHHHHHHHHhh
Confidence            789999995 778899999999998887654  7899999999998 998887777776665553     25666643

>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]

Probab=94.41  E-value=0.47  Score=51.56  Aligned_cols=106  Identities=18%  Similarity=0.135  Sum_probs=57.7

Q ss_pred             HHHHhhhCCCCcEEEEeecCCCccchhhhhhcccCcEEeeCCCCCCC----CCCChHHHHHHHHHHHHHHHhhCCCccEE
Q 001565           48 LTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEG----CPLLPMSLIQHFLRVCEHWLLLGDHQNVI  123 (1052)
Q Consensus        48 ~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~s~f~~~V~~yP~~d~g----~P~p~L~~L~~~c~~~~~WL~~d~~~NVv  123 (1052)
                      ..||++-|-   .-|.-||.|.|-.....-+...+..+.++..+-..    -|  ...+..+.++.+-+.| .|..+.=+
T Consensus        78 fsFL~~L~L---ksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P--~~~~~~~~i~~~l~~l-ld~~N~P~  151 (249)
T KOG1572|consen   78 FSFLKTLHL---KSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKKEP--FVNIPDHSIRKALKVL-LDKRNYPI  151 (249)
T ss_pred             hHHHHHhhh---heEEEecCCCCChHHHHHHHhcCceEEEEecccccccccCC--CCCChHHHHHHHHHHH-hcccCCce
Confidence            456766543   34555676644211111122334555555433222    22  3444445555444443 34443679


Q ss_pred             EEEecCCCcchHHHHHHHHHHHhcCCccHHHHHHHHHHh
Q 001565          124 LLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHRE  162 (1052)
Q Consensus       124 vVHCk~GkgRt~g~mia~yLly~~~~~~~~~Al~~~~k~  162 (1052)
                      +|||++||-|| |++|+|+=-..+ |.... .|+.|.++
T Consensus       152 Lihc~rGkhRt-g~lVgclRklq~-W~lss-il~Ey~~f  187 (249)
T KOG1572|consen  152 LIHCKRGKHRT-GCLVGCLRKLQN-WSLSS-ILDEYLRF  187 (249)
T ss_pred             EEecCCCCcch-hhhHHHHHHHhc-cchhH-HHHHHHHh
Confidence            99999999998 999999864444 33332 56666544

>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function

Probab=93.41  E-value=0.52  Score=45.84  Aligned_cols=93  Identities=14%  Similarity=0.152  Sum_probs=48.3

Q ss_pred             ceeeeeCcEEEEecCCCCCCCCcccccccHHHHHHHHhhhCCCCcEEEEeecCCCc-cc-----hhhhhhcccCcEEeeC
Q 001565           15 GLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEK-QS-----EFAEILCEYDVTVLDY   88 (1052)
Q Consensus        15 DLtYIT~RIiam~~~fPae~~~E~~YRN~i~dV~~~L~~~h~~~~y~V~NLs~~~~-~s-----~~~~~~s~f~~~V~~y   88 (1052)
                      |+..|++++.+.  +-++           .+|+.. |.+.  | ==.|.|++.... ..     .+......++++.++.
T Consensus         1 di~~i~~~~~vs--~Q~~-----------~~d~~~-la~~--G-fktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~i   63 (110)
T PF04273_consen    1 DIRQISDDLSVS--GQPS-----------PEDLAQ-LAAQ--G-FKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHI   63 (110)
T ss_dssp             --EEEETTEEEE--CS-------------HHHHHH-HHHC--T---EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE-
T ss_pred             CCEecCCCeEEC--CCCC-----------HHHHHH-HHHC--C-CcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEe
Confidence            788999999999  4443           233333 3332  2 124788863311 11     1222345788899999


Q ss_pred             CCCCCCCCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcch
Q 001565           89 PRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPL  134 (1052)
Q Consensus        89 P~~d~g~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt  134 (1052)
                      |+...+   ++.+.+..|.+.+++   ....   |++||+.|. |.
T Consensus        64 Pv~~~~---~~~~~v~~f~~~l~~---~~~P---vl~hC~sG~-Ra   99 (110)
T PF04273_consen   64 PVDGGA---ITEEDVEAFADALES---LPKP---VLAHCRSGT-RA   99 (110)
T ss_dssp             ---TTT-----HHHHHHHHHHHHT---TTTS---EEEE-SCSH-HH
T ss_pred             ecCCCC---CCHHHHHHHHHHHHh---CCCC---EEEECCCCh-hH
Confidence            888653   378888888776655   3445   999999985 75

; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.

>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A

Probab=92.87  E-value=0.2  Score=50.78  Aligned_cols=67  Identities=13%  Similarity=0.056  Sum_probs=42.3

Q ss_pred             CCCCCCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCc--c-hHHHHHHHHHHHhcCCccHHHHHHHHH
Q 001565           91 QYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGW--P-LLAFLLASLLIFRKLHSGERRTLEIVH  160 (1052)
Q Consensus        91 ~d~g~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~Gkg--R-t~g~mia~yLly~~~~~~~~~Al~~~~  160 (1052)
                      .|-|.  +.|.+|++||..+++-|+....+|-.||||.....  | -.|++||||++....++. ++|++.+.
T Consensus        39 ~DFGP--lnL~~lyrfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~sp-e~A~~~l~  108 (141)
T PF14671_consen   39 ADFGP--LNLAQLYRFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSP-EEAYKPLA  108 (141)
T ss_dssp             S--------HHHHHHHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---H-HHHHHHHT
T ss_pred             CcCCC--ccHHHHHHHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCH-HHHHHHHH
Confidence            34454  48999999999999999984333447778775422  3 358999999988877755 45888874

>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]

Probab=89.74  E-value=0.55  Score=60.42  Aligned_cols=73  Identities=25%  Similarity=0.366  Sum_probs=45.6

Q ss_pred             cEEEEeecCCCccchhhhhhcccCcEEeeCCCCCCCCCC-----ChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcc
Q 001565           59 AFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGCPL-----LPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWP  133 (1052)
Q Consensus        59 ~y~V~NLs~~~~~s~~~~~~s~f~~~V~~yP~~d~g~P~-----p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgR  133 (1052)
                      -|+|-|..++.++            .|..|  +++|||.     ..-..|..+.+....|-+...+ .=++|||.+|.||
T Consensus       967 ~f~i~n~~~~~~r------------~v~qf--q~~~WP~~~~~p~~~~~~~~i~~~~~~~q~~~~~-~P~~Vhc~nG~~r 1031 (1087)
T KOG4228|consen  967 EFGVTNEREKQSR------------TVRQF--QFTGWPEYGKPPQSKGPISKIPSVASKWQQLGAD-GPIIVHCLNGVGR 1031 (1087)
T ss_pred             hheeeeccccCce------------EEEEE--EecCCcccCcCCCCcchhhhHHHHHHHHHhhcCC-CCEEEEEcCCCcc
Confidence            4666666644331            34333  5667761     1234445555555677776654 6689999999999


Q ss_pred             hHHHHHHHHHHHhc
Q 001565          134 LLAFLLASLLIFRK  147 (1052)
Q Consensus       134 t~g~mia~yLly~~  147 (1052)
                      + |+.+|+.++..+
T Consensus      1032 s-g~f~ai~~l~e~ 1044 (1087)
T KOG4228|consen 1032 T-GTFCAISILLER 1044 (1087)
T ss_pred             e-eehHHHHHHHHH
Confidence            8 887776655443

>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]

Probab=84.80  E-value=5.2  Score=41.06  Aligned_cols=113  Identities=15%  Similarity=0.179  Sum_probs=65.7

Q ss_pred             CceeeeeCcEEEEecCCCCCCCCcccccccHHHHHHHHhhhCCCCcEEEEeecCCCccchhhhhhc-c-cCcEEeeCCCC
Q 001565           14 DGLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILC-E-YDVTVLDYPRQ   91 (1052)
Q Consensus        14 LDLtYIT~RIiam~~~fPae~~~E~~YRN~i~dV~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~s-~-f~~~V~~yP~~   91 (1052)
                      .|.-|.-.||+|.    |             ..++.....||+- .-||-=+.-+.+..+-+.... + +...+-|.-+.
T Consensus         7 i~~~~f~t~Ivv~----P-------------l~~~ae~~~rh~~-t~mlsl~a~~t~~~~pa~~~~erhL~l~fnDI~~~   68 (172)
T COG5350           7 IDFDPFMTRIVVS----P-------------LSVIAETAARHGP-THMLSLLAKGTYFHRPAVIAAERHLTLHFNDIAEP   68 (172)
T ss_pred             cccccceeeeEec----h-------------HHHHHHHHhhcCC-ceEEEeecccccccCccccchhhceeEeeccccCC
Confidence            4556666777776    2             2355667778875 455544444444322111111 1 12233344445


Q ss_pred             CCCCCCChHHHHHHHHHHHHHHHhhCCCccEEEEEecCCCcchH-HHHHHHHHHHhcC
Q 001565           92 YEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLL-AFLLASLLIFRKL  148 (1052)
Q Consensus        92 d~g~P~p~L~~L~~~c~~~~~WL~~d~~~NVvvVHCk~GkgRt~-g~mia~yLly~~~  148 (1052)
                      +.|+=++.-+.+..++..+++|=...+    ++|||-+|-+|+. +.|++++-++..+
T Consensus        69 ~~g~~ap~e~Hv~~i~DF~~~wp~~ap----llIHC~aGISRStA~A~i~a~ala~~~  122 (172)
T COG5350          69 DDGWIAPGEAHVRAIIDFADEWPRFAP----LLIHCYAGISRSTAAALIAALALAPDM  122 (172)
T ss_pred             CccccCCCHHHHHHHHHHHhcCccccc----eeeeeccccccchHHHHHHHHhhcccc
Confidence            555434467788888888889965444    8999999999953 4455566665543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1052
2j1d_G	483	Crystallization Of Hdaam1 C-Terminal Fragment Lengt		7e-07
2z6e_A	419	Crystal Structure Of Human Daam1 Fh2 Length = 419		8e-07
3n0a_A	361	Crystal Structure Of Auxilin (40-400) Length = 361		1e-06

>pdb|2J1D|G Chain G, Crystallization Of Hdaam1 C-Terminal Fragment Length = 483

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 82/155 (52%), Gaps = 17/155 (10%)
Query: 908  SLKPLHWVKV-TRAMQGSLWADSQKQENHSRAPEI-DISELESLFSA---ASDGSGTNKT 962
            +LK  +W K+    ++G++W +     + ++  +I D+ +LE  FSA     D    + +
Sbjct: 14   ALKSFNWSKLPENKLEGTVWTEI----DDTKVFKILDLEDLERTFSAYQRQQDFFVNSNS 69
Query: 963  GVRRGSNIN-------KPEKVQLVELRRAYNCEIMLTKIKIPLPDMMNAVLALDSSA-LD 1014
              +    I+       K +++ +++ RRA NC I+L+++K+   ++  A+L +D    L 
Sbjct: 70   KQKEADAIDDTLSSKLKVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLP 129
Query: 1015 IDQVENLIKFCPTKEEMELLKNYAGDKVMLGKCEQ 1049
             D +E L+KF P K +++LL+ +  +   + K ++
Sbjct: 130  KDMLEQLLKFVPEKSDIDLLEEHKHELDRMAKADR 164

>pdb|2Z6E|A Chain A, Crystal Structure Of Human Daam1 Fh2 Length = 419

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 82/155 (52%), Gaps = 17/155 (10%)
Query: 908  SLKPLHWVKV-TRAMQGSLWADSQKQENHSRAPEI-DISELESLFSA---ASDGSGTNKT 962
            +LK  +W K+    ++G++W +     + ++  +I D+ +LE  FSA     D    + +
Sbjct: 16   ALKSFNWSKLPENKLEGTVWTEI----DDTKVFKILDLEDLERTFSAYQRQQDFFVNSNS 71
Query: 963  GVRRGSNIN-------KPEKVQLVELRRAYNCEIMLTKIKIPLPDMMNAVLALDSSA-LD 1014
              +    I+       K +++ +++ RRA NC I+L+++K+   ++  A+L +D    L 
Sbjct: 72   KQKEADAIDDTLSSKLKVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLP 131
Query: 1015 IDQVENLIKFCPTKEEMELLKNYAGDKVMLGKCEQ 1049
             D +E L+KF P K +++LL+ +  +   + K ++
Sbjct: 132  KDMLEQLLKFVPEKSDIDLLEEHKHELDRMAKADR 166

>pdb|3N0A|A Chain A, Crystal Structure Of Auxilin (40-400) Length = 361

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 104/251 (41%), Gaps = 37/251 (14%)
Query: 103 IQHFLRVCEH---WLLLGDHQNVILLHSERGGWPXXXXXXXXXXIFRKLHSGERRTLEIV 159
           + +   VC +   WLL  + +NV ++H    G            IF  L+S     + ++
Sbjct: 96  LHNLFAVCRNMYNWLL-QNPKNVCVVHC-LDGRAASSILVGAMFIFCNLYSTPGPAVRLL 153
Query: 160 HREAPKGFLQLLSPLNPFPSQLRYLQYVARRNITPEWPPPERALSLDCVILRAIPNFDAQ 219
           + + P   L         PS  RYL Y+        + P  + L++  + +  +P F+ Q
Sbjct: 154 YAKRPGIGLS--------PSHRRYLGYMCDLLADKPYRPHFKPLTIKSITVSPVPFFNKQ 205
Query: 220 -NGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTLRHYRQADCDVIKIDIQCLVQGDVV 278
            NGCRP   +          +    I++     + ++ YR  D  +  I +   VQGDVV
Sbjct: 206 RNGCRPYCDVL---------IGETKIYTTCADFERMKEYRVQDGKIF-IPLSITVQGDVV 255
Query: 279 LECVHL------DLDPE-REVMMFRVMFNTAFI--RSNILMLNSENLDILWDSKERYPKG 329
           +   HL       L  +     +F++ F+T FI   + +L      LD   D  E+YP+ 
Sbjct: 256 VSMYHLRSTIGSRLQAKVTNTQIFQLQFHTGFIPLDTTVLKFTKPELDAC-DVPEKYPQL 314
Query: 330 FRAEVLFGDVE 340
           F+  +   DVE
Sbjct: 315 FQVTL---DVE 322

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1052
3n0a_A	361	Tyrosine-protein phosphatase auxilin; phosphatase-	1e-43
1d5r_A	324	Phosphoinositide phosphotase PTEN; C2 domain, phos	1e-41
3v0d_A	339	Voltage-sensor containing phosphatase; PTP, hydrol	6e-41
3obv_E	457	Protein diaphanous homolog 1; autoinhibition, acti	1e-38
2j1d_G	483	DAAM1, disheveled-associated activator of morphoge	9e-37
1ux5_A	411	BNI1 protein; structural protein, FH2 actin cytosk	1e-29
1v9d_A	340	Diaphanous protein homolog 1; helix bundle, protei	2e-28
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	4e-19
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	4e-17
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	8e-17
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	1e-16
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	2e-13
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	3e-11
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	4e-18
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	5e-18
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	2e-17
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	4e-17
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	8e-17
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	1e-15
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	4e-10
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	2e-08
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-15
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-14
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-12
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	6e-12
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-11
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-11
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-11
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	5e-10
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	5e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	2e-10
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	2e-09
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	1e-08
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	4e-08
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	7e-08
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	8e-08
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	1e-04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	6e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	1e-09
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	6e-09
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	7e-09
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-08
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-08
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	3e-08
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	4e-08
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	1e-07
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	3e-07
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	3e-05
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	2e-09
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	7e-09
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	8e-09
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	9e-09
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	5e-08
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	6e-08
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	6e-08
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	1e-07
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	2e-07
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	3e-07
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	3e-06
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	3e-06
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	1e-04
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	2e-08
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	4e-08
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	5e-08
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	8e-08
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	8e-08
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	8e-08
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	1e-07
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	3e-07
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	4e-07
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	6e-07
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	2e-06
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	3e-06
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	2e-05
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	7e-04
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	6e-08
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	3e-07
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	4e-07
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	1e-06
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	1e-06
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	1e-06
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	4e-06
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	7e-06
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	8e-06
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	3e-05
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	6e-05
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	5e-04
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	1e-07
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	2e-07
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	2e-05
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	4e-05
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	5e-05
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	3e-07
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	3e-07
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	5e-06
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	2e-05
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	2e-05
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	4e-05
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	8e-05
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	1e-04
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	3e-04
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	4e-04
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	9e-04
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	8e-07
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	3e-06
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	9e-06
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	1e-05
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	5e-05
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	5e-05
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	7e-05
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	2e-04
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	5e-04
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	5e-04
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	6e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	1e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	3e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	4e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	4e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	4e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	6e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	8e-04
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	1e-05
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	4e-05
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	2e-04
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	3e-05
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	5e-05
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	8e-05
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	2e-04
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	4e-05
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	3e-04
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	3e-04
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	6e-04
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	8e-04
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	5e-05
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	3e-04
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	5e-05
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	7e-05
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	4e-04
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	4e-04
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	8e-04
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	6e-05
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	4e-04
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	4e-04
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	5e-04
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	5e-04
3odw_A	536	RHO guanine nucleotide exchange factor 1; regulati	6e-04

>3n0a_A Tyrosine-protein phosphatase auxilin; phosphatase-like domain, C2 domain, hydrolase; 2.20A {Bos taurus} Length = 361

 Score =  162 bits (409), Expect = 1e-43
 Identities = 73/360 (20%), Positives = 135/360 (37%), Gaps = 43/360 (11%)

Query: 21  ERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCE 80
            R+ V    F  + V  G ++  + +I + L +      +  +N      ++       +
Sbjct: 29  SRIIVM--SFPLDSVDIG-FRNQVDDIRSFL-DSRHLDHYTVYNLSPKSYRTA------K 78

Query: 81  YDVTVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLA 140
           +   V +        P L    +    R   +WLL  + +NV ++H    G    + L+ 
Sbjct: 79  FHSRVSECSWPIRQAPSL--HNLFAVCRNMYNWLLQ-NPKNVCVVHC-LDGRAASSILVG 134

Query: 141 SLLIFRKLHSGERRTLEIVHREAPKGFLQLLSPLNPFPSQLRYLQYVARRNITPEWPPPE 200
           ++ IF  L+S     + +++ + P   L         PS  RYL Y+        + P  
Sbjct: 135 AMFIFCNLYSTPGPAVRLLYAKRPGIGLS--------PSHRRYLGYMCDLLADKPYRPHF 186

Query: 201 RALSLDCVILRAIPNFD-AQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTLRHYRQ 259
           + L++  + +  +P F+  +NGCRP   +               I++     + ++ YR 
Sbjct: 187 KPLTIKSITVSPVPFFNKQRNGCRPYCDVLIGE---------TKIYTTCADFERMKEYRV 237

Query: 260 ADCDVIKIDIQCLVQGDVVLECVHLDLDPEREV-------MMFRVMFNTAFI--RSNILM 310
            D   I I +   VQGDVV+   HL       +        +F++ F+T FI   + +L 
Sbjct: 238 QDG-KIFIPLSITVQGDVVVSMYHLRSTIGSRLQAKVTNTQIFQLQFHTGFIPLDTTVLK 296

Query: 311 LNSENLDILWDSKERYPKGFRAEVLFGDVESISPPRAPTSILNGEEKGGLPIEAFSRVRE 370
                LD   D  E+YP+ F+  +                  +   K   P   FS  +E
Sbjct: 297 FTKPELDA-CDVPEKYPQLFQVTLDVELQPHDKVMELTPPWEHYCTKDVNPSILFSSHQE 355

>1d5r_A Phosphoinositide phosphotase PTEN; C2 domain, phosphotidylinositol, hydrolase; HET: TLA; 2.10A {Homo sapiens} SCOP: b.7.1.1 c.45.1.1 Length = 324

 Score =  154 bits (390), Expect = 1e-41
 Identities = 58/349 (16%), Positives = 110/349 (31%), Gaps = 46/349 (13%)

Query: 6   RFFYKRPPDGLLEFI-ERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFN 64
           R + +   D  L +I   +             +G+Y+  + +++  L  +  +  +  +N
Sbjct: 8   RRYQEDGFDLDLTYIYPNIIAMGFPAERL---EGVYRNNIDDVVRFLDSKHKNH-YKIYN 63

Query: 65  FREGEKQSEFAEILCEYDVTVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVIL 124
                          +++  V  YP +    P   + LI+ F    + WL   D  +V  
Sbjct: 64  LCAERHYDT-----AKFNCRVAQYPFEDHNPP--QLELIKPFCEDLDQWLS-EDDNHVAA 115

Query: 125 LHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGFLQLLSPLNPFPSQLRYL 184
           +H  + G      ++ + L+ R      +  L+       +            PSQ RY+
Sbjct: 116 IHC-KAGKGRTGVMICAYLLHRGKFLKAQEALDFYGEVRTRD-----KKGVTIPSQRRYV 169

Query: 185 QYVARRNITPEWPPPERALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMI 244
            Y +   +         AL    ++   IP F     C P   +               I
Sbjct: 170 YYYSYL-LKNHLDYRPVALLFHKMMFETIPMFS-GGTCNPQFVVCQLK---------VKI 218

Query: 245 FSMSKKRKTLRHYRQADCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMFNTAFI 304
           +S +         R+      +      V GD+ +E  H      ++  MF    NT FI
Sbjct: 219 YSSNSGPT----RREDKFMYFEFPQPLPVCGDIKVEFFHKQNKMLKKDKMFHFWVNTFFI 274

Query: 305 RSN----------ILMLNSENLDILWDSK--ERYPKGFRAEVLFGDVES 341
                        +L L   +LD     K    +   F+ ++ F     
Sbjct: 275 PGPEEVDNDKEYLVLTLTKNDLDKANKDKANRYFSPNFKVKLYFTKTVE 323

>3v0d_A Voltage-sensor containing phosphatase; PTP, hydrolase; HET: PO4; 1.10A {Ciona intestinalis} PDB: 3v0f_A* 3v0g_A 3v0h_A* 3awf_A 3v0j_A 3awe_A 3awg_A 3v0e_A 3v0i_A Length = 339

 Score =  153 bits (386), Expect = 6e-41
 Identities = 61/326 (18%), Positives = 110/326 (33%), Gaps = 22/326 (6%)

Query: 24  YVFDSCFSTEVVPDGMYQLYLHEI--LTELHEEFPDSAFLAFNFREGEKQSEFAEILCEY 81
           YV D   +      G   L+ + I  ++   +      F  +N        E      ++
Sbjct: 29  YVTDHVIAMSFPSSGRQSLFRNPIGEVSRFFKTKHPDKFRIYNLCSERGYDE-----TKF 83

Query: 82  DVTVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLAS 141
           D  V          P L    +  F+   + W+   D  +VI +HS +GG      L++S
Sbjct: 84  DNHVYRVMIDDHNVPTLVD--LLKFIDDAKVWMT-SDPDHVIAIHS-KGGKGRTGTLVSS 139

Query: 142 LLIFRKLHSGERRTLEIVHREAPKGFLQLLSPLNPFPSQLRYLQYVAR-RNITPEWPPPE 200
            L+        +  LE          +  +       SQ+RY+ Y  + +       PP 
Sbjct: 140 WLLEDGKFDTAKEALEYFGSRRTDFEVGDVFQGVETASQIRYVGYFEKIKKNYGGQLPPM 199

Query: 201 RALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTLRHYRQA 260
           + L +  V + AI      NG    ++I              +          L++    
Sbjct: 200 KKLKVTGVTITAIQGVGRGNGSDLSMQIVSERQEVL------LCKFAEGYNCALQYDATD 253

Query: 261 DCDVIKIDIQCLVQGDVVLECVHLDLDPER--EVMMFRVMFNTAFIRSNILMLNSENLDI 318
           DC   ++    ++ GD+ +  +       R  +   F   FNT+ +  + + L  E +D 
Sbjct: 254 DCVTCEVKNCPVLAGDIKVRFMSTSKSLPRGYDNCPFYFWFNTSLVEGDHVTLKREEIDN 313

Query: 319 LWDSKE--RYPKGFRAEVLFGDVESI 342
               K    Y   F  ++ F D E I
Sbjct: 314 PHKKKTWKIYRDNFTVKLTFSDAEDI 339

>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D Length = 457

 Score =  150 bits (379), Expect = 1e-38
 Identities = 29/152 (19%), Positives = 64/152 (42%), Gaps = 10/152 (6%)

Query: 904  PKKASLKPLHWVKV--TRAMQGSLWADSQKQENHSRAPEIDISELESLFSA----ASDGS 957
            P+   L+  +W K       Q   W   ++    +       ++L   FSA    +    
Sbjct: 6    PEV-QLRRPNWSKFVAEDLSQDCFWTKVKEDRFEN---NELFAKLTLAFSAQTKTSKAKK 61

Query: 958  GTNKTGVRRGSNINKPEKVQLVELRRAYNCEIMLTKIKIPLPDMMNAVLALDSSALDIDQ 1017
                   ++     K +++++++ + A N  I L   ++P  ++ N +L ++ + L    
Sbjct: 62   DQEGGEEKKSVQKKKVKELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESM 121

Query: 1018 VENLIKFCPTKEEMELLKNYAGDKVMLGKCEQ 1049
            ++NLIK  P  E++++L     +   L + EQ
Sbjct: 122  IQNLIKQMPEPEQLKMLSELKEEYDDLAESEQ 153

>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A Length = 483

 Score =  144 bits (365), Expect = 9e-37
 Identities = 37/158 (23%), Positives = 78/158 (49%), Gaps = 16/158 (10%)

Query: 904  PKKASLKPLHWVKV-TRAMQGSLWADSQKQENHSRAPEIDISELESLFSAASDGSGTNKT 962
            P   +LK  +W K+    ++G++W    + ++      +D+ +LE  FSA          
Sbjct: 11   PTN-ALKSFNWSKLPENKLEGTVWT---EIDDTKVFKILDLEDLERTFSAYQRQQDFFVN 66

Query: 963  GVRR----------GSNINKPEKVQLVELRRAYNCEIMLTKIKIPLPDMMNAVLALDSS- 1011
               +           S+  K +++ +++ RRA NC I+L+++K+   ++  A+L +D   
Sbjct: 67   SNSKQKEADAIDDTLSSKLKVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQE 126

Query: 1012 ALDIDQVENLIKFCPTKEEMELLKNYAGDKVMLGKCEQ 1049
             L  D +E L+KF P K +++LL+ +  +   + K ++
Sbjct: 127  DLPKDMLEQLLKFVPEKSDIDLLEEHKHELDRMAKADR 164

>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A Length = 411

 Score =  121 bits (306), Expect = 1e-29
 Identities = 30/168 (17%), Positives = 57/168 (33%), Gaps = 31/168 (18%)

Query: 904  PKKASLKPLHWVKVTRAMQGSLWADSQKQENHSR-APEIDISELESLFSAASDGSGTNKT 962
            P K  LK LHW K+      S+W   + ++       +  +++LE  F+A    S  +K 
Sbjct: 5    PHK-KLKQLHWEKL-DCTDNSIWGTGKAEKFADDLYEKGVLADLEKAFAAREIKSLASKR 62

Query: 963  GVRRGSNINKPEKVQLVELRRAYNCEIMLTKIK-IPLPDMMNAVLALDSSALDIDQVENL 1021
                       +K+  +    +    I L     + + D++  +L  D   L    V   
Sbjct: 63   K-------EDLQKITFLSRDISQQFGINLHMYSSLSVADLVKKILNCDRDFLQTPSVVEF 115

Query: 1022 I--------------KFCPTKEEMELLKNYA------GDKVMLGKCEQ 1049
            +               + P   + E ++N         D   L + +Q
Sbjct: 116  LSKSEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEKDPNDLQRADQ 163

>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1 Length = 340

 Score =  116 bits (293), Expect = 2e-28
 Identities = 19/79 (24%), Positives = 43/79 (54%)

Query: 971  NKPEKVQLVELRRAYNCEIMLTKIKIPLPDMMNAVLALDSSALDIDQVENLIKFCPTKEE 1030
             K +++++++ + A N  I L   ++P  ++ N +L ++ + L    ++NLIK  P  E+
Sbjct: 4    KKVKELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQ 63

Query: 1031 MELLKNYAGDKVMLGKCEQ 1049
            +++L     +   L + EQ
Sbjct: 64   LKMLSELKEEYDDLAESEQ 82

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 92.8 bits (230), Expect = 4e-19
 Identities = 66/279 (23%), Positives = 84/279 (30%), Gaps = 24/279 (8%)

Query: 500  FPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSP 559
            +  SP        +P     S                       P   + S    S  S 
Sbjct: 1486 YERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSS 1545

Query: 560  PPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPM----------PSETSRGPPP--PP 607
               P    +S + +  SP     P    SS  +SP            S TS    P  P 
Sbjct: 1546 AMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1605

Query: 608  PPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPP 667
                 P++S    S   ++ S  P  P   P    Y   S +   TS    P  P   P 
Sbjct: 1606 YSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1665

Query: 668  SFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPN 727
            S S   +S   S +S    P   P  PS+S  S     T+    P  P   P  P+  P 
Sbjct: 1666 SPSYSPTSPSYSPTS----PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1721

Query: 728  SSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPS 766
            S        P  SPTS S  P+     P  P   P  PS
Sbjct: 1722 S--------PSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1752

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 86.3 bits (213), Expect = 4e-17
 Identities = 76/334 (22%), Positives = 90/334 (26%), Gaps = 56/334 (16%)

Query: 532  PMSAPPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKD 591
                     P     P   S          P     S                    +  
Sbjct: 1470 GSGMGTSQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGA-- 1527

Query: 592  FSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMP 651
             SP     S G   P      P +                  P   P    Y    + MP
Sbjct: 1528 ASPYKGVQSPGYTSPFSSAMSPGYG--------------LTSPSYSPSSPGYSTSPAYMP 1573

Query: 652  STSSIGPP-PPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKG 710
            S+ S  P  P   P  PS+S    S  P TS   S   P   P   S   S    + S  
Sbjct: 1574 SSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSATSPSYSP--TSPSYSPTSPSYS-- 1628

Query: 711  PPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGK 770
             P  P   P  P+  P S        P  SPTS    PS+ P  P   P  P        
Sbjct: 1629 -PTSPSYSPTSPSYSPTS--------PSYSPTS----PSYSPTSPSYSPTSP-------- 1667

Query: 771  ITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPA 830
                   +PTS    P  P   P S     P   P  PS      +     P   P  P+
Sbjct: 1668 -----SYSPTSPSYSPTSPSYSPTS-----PSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1717

Query: 831  RSGAVLPPPPPAPKL-PTAP--SPPSRGVMPSPP 861
             S       P +P   PT+P  SP S    P+ P
Sbjct: 1718 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1751

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 85.1 bits (210), Expect = 8e-17
 Identities = 65/299 (21%), Positives = 84/299 (28%), Gaps = 34/299 (11%)

Query: 572  NNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVP 631
             N+      P            P  + T     P        +      S +    S   
Sbjct: 1457 MNYSLGTAVPTLAGSGMGTSQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGS--- 1513

Query: 632  PPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPP 691
                        G  S      S     P      P +     S  PS+    + P   P
Sbjct: 1514 EGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMP 1573

Query: 692  PPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFH 751
              PS+S  S     T+    P  P   P  P+    S        P  SPTS S  P+  
Sbjct: 1574 SSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATS--------PSYSPTSPSYSPT-- 1623

Query: 752  PPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIG 811
              P   P  P   P+S           P+  P  P   P  P    TS   +P  P    
Sbjct: 1624 -SPSYSPTSPSYSPTS-----------PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1671

Query: 812  CKPINAPRPPPPPP------PLGPARSGAVLPPPPPAPK-LPTAP--SPPSRGVMPSPP 861
              P  +P  P   P      P  P+ S       P +P   PT+P  SP S    P+ P
Sbjct: 1672 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1730

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 84.4 bits (208), Expect = 1e-16
 Identities = 66/269 (24%), Positives = 82/269 (30%), Gaps = 19/269 (7%)

Query: 502  PSPSSPQSIAPTPPLPPHS--SPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSP 559
            P   SP   +     P  +  SP    G      S               S         
Sbjct: 1485 PYERSPMVDSGFVGSPDAAAFSPLVQGG------SEGREGFGDYGLLGAASPYKGVQSPG 1538

Query: 560  PPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKD 619
               P     S      SP   P  P   +S  + P     S  P  P   P  P++S   
Sbjct: 1539 YTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYS--PTSPSYSPTSPSYSPT- 1595

Query: 620  SSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPS 679
            S +   TS     P      PS+     S  P++ S  P  P   P        S S   
Sbjct: 1596 SPSYSPTS-----PSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1650

Query: 680  TSSIGSP--PPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPP 737
            TS   SP  P   P  PS+S  +S   S TS    P  P   P   +   +S +     P
Sbjct: 1651 TSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1709

Query: 738  HPSPTSRSSQPSFHPPPPPPPPPPPPPPS 766
              SPTS S  P+     P  P   P  PS
Sbjct: 1710 SYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1738

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 74.0 bits (181), Expect = 2e-13
 Identities = 68/302 (22%), Positives = 82/302 (27%), Gaps = 36/302 (11%)

Query: 603  PPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPP 662
                 P                 T     P        S      S  P     G     
Sbjct: 1461 LGTAVPTLAGSGMGTSQLPEGAGTPYERSPMVDSGFVGSPDAAAFS--PLVQG-GSEGRE 1517

Query: 663  PPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPP 722
                    G  S      S   + P      P +   S    S +S G    P   P  P
Sbjct: 1518 GFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPS-YSPSSPGYSTSPAYMPSSP 1576

Query: 723  AAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPP-PPPPPSSLGKITNKLQLAPTS 781
            +  P S        P  SPTS    PS+ P  P   P  P    +S          +PTS
Sbjct: 1577 SYSPTS--------PSYSPTS----PSYSPTSPSYSPTSPSYSATSPS-------YSPTS 1617

Query: 782  QPAVPPPPPPLPKSCS---TSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPP 838
                P  P   P S S   TS   +P  P      P  +P  P   P   P+ S      
Sbjct: 1618 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSY 1676

Query: 839  PPPAPKL-PTAP-----SPPSRGVMPSPPPPPGVKSSSVP--PPPLPSVGKGKVTSGPAS 890
             P +P   PT+P     SP      PS  P     S + P   P  PS      +  P S
Sbjct: 1677 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1736

Query: 891  HG 892
              
Sbjct: 1737 PS 1738

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 67.4 bits (164), Expect = 3e-11
 Identities = 64/237 (27%), Positives = 79/237 (33%), Gaps = 33/237 (13%)

Query: 495  GNPPCFPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNN 554
             +        +SP S +P+ P    S     S     P S   PS  P  P   P+S + 
Sbjct: 1544 SSAMSPGYGLTSP-SYSPSSPGYSTSPAYMPSSPSYSPTS---PSYSPTSPSYSPTSPSY 1599

Query: 555  SFLSP-PPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPP 613
            S  SP      P  S T+ ++ SP  P   P        SP  S TS    P  P   P 
Sbjct: 1600 SPTSPSYSATSPSYSPTSPSY-SPTSPSYSP-------TSPSYSPTSPSYSPTSPSYSP- 1650

Query: 614  AFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKG 673
                        TS    P  P   P S     +S   S +S    P  P   P+     
Sbjct: 1651 ------------TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT----- 1693

Query: 674  SSSLPSTSSIGSPPPP--PPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNS 728
            S S   TS   SP  P   P  PS+S  S     T+    P  P   P  P+  P S
Sbjct: 1694 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1750

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 89.8 bits (222), Expect = 4e-18
 Identities = 67/271 (24%), Positives = 88/271 (32%), Gaps = 26/271 (9%)

Query: 567  PSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRST 626
            P S  +  ++          FS    S      + G           A S   +     T
Sbjct: 1472 PYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPT 1531

Query: 627  SSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPP---PPPPSFSGKGSSSLPS---- 679
            S       P   P S     +S   S +S    P  P   P  PS+S    S  P+    
Sbjct: 1532 SPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1591

Query: 680  --TSSIGSPPPPPPPP--PSFSGRS-SIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLS 734
              TS   SP  P   P  PS+S  S S  P++ S  P  P   P  P  +   +S +   
Sbjct: 1592 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP--TSPSYSP 1649

Query: 735  APPHPSPTS---RSSQPSFHPPPPP-PPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPP 790
              P  SPTS     + PS+ P  P   P  P   P+S          +PTS    P  P 
Sbjct: 1650 TSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS-------PSYSPTSPNYSPTSPS 1702

Query: 791  PLPKSCSTSIPMAPPPPPSIGCKPINAPRPP 821
              P S   S P +P   P    +  N     
Sbjct: 1703 YSPTSPGYS-PGSPAYSPKQDEQKHNENENS 1732

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 89.0 bits (220), Expect = 5e-18
 Identities = 62/278 (22%), Positives = 78/278 (28%), Gaps = 43/278 (15%)

Query: 497  PPCFPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPP---PPPPPPLPSSTN 553
               F P   S  + A       +          P       P+ P      P   P+S  
Sbjct: 1489 ELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPT 1548

Query: 554  NSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPP 613
             S  SP   P            + P   P  P +S    S  P+  S  P  P   P  P
Sbjct: 1549 YSPTSPAYSP------------TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1596

Query: 614  AFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTM-PSTSSIGPPPPPPPPPPSFSGK 672
            ++S              P  P   P    Y   S +  P++ S  P  P   P       
Sbjct: 1597 SYS--------------PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1642

Query: 673  GSSSLPSTSSIGSPPPP--PPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSK 730
             S S   TS   SP  P   P  PS+S  S     T+    P  P   P  P   P S  
Sbjct: 1643 TSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTS-- 1700

Query: 731  ALLSAPPHPSPTSRS---SQPSFHPPPPPPPPPPPPPP 765
                  P  SPTS       P++ P             
Sbjct: 1701 ------PSYSPTSPGYSPGSPAYSPKQDEQKHNENENS 1732

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 87.1 bits (215), Expect = 2e-17
 Identities = 58/292 (19%), Positives = 85/292 (29%), Gaps = 16/292 (5%)

Query: 511  APTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPSST 570
                            GV P    +   +        L  S        P        + 
Sbjct: 1453 YMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFS--------PLVDSGSNDAM 1504

Query: 571  NNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIV 630
               F +               +   P+    G   P   P  P +S    +   ++ S  
Sbjct: 1505 AGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYS 1564

Query: 631  PPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPP 690
            P  P   P    Y   S +   TS    P  P   P S S   +S   S +S    P   
Sbjct: 1565 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS----PSYS 1620

Query: 691  PPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPH--PSPTSRSSQP 748
            P  PS+S  S     T+    P  P   P  P+  P S     ++P +   SP+   + P
Sbjct: 1621 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSP 1680

Query: 749  SFHPP-PPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTS 799
            S+ P  P   P  P   P+S          +P S PA  P       + + +
Sbjct: 1681 SYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGS-PAYSPKQDEQKHNENEN 1731

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 86.3 bits (213), Expect = 4e-17
 Identities = 72/330 (21%), Positives = 98/330 (29%), Gaps = 37/330 (11%)

Query: 462  GPHDVILVSEPIDQVSNETVLSSLHQQSLVLTEGNPPCFPPSPSSPQSIAPTPPLPPHSS 521
            G  DV++  E + +   E  ++ +         G  P    S      +     L    S
Sbjct: 1439 GAFDVMIDEESLVKYMPEQKITEIEDG---QDGGVTPYSNESGLVNADLDVKDELM--FS 1493

Query: 522  PASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPP 581
            P   SG                              SP       P+S      SP   P
Sbjct: 1494 PLVDSGSNDAMAGGFTAYGGADYGEAT---------SPFGAYGEAPTSPGFGVSSPGFSP 1544

Query: 582  PPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPS 641
                  +S  +SP     S  P  P   P  P++S    S   ++ S  P  P   P   
Sbjct: 1545 ------TSPTYSPTSPAYS--PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1596

Query: 642  FYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSS 701
             Y   S +   TS     P   P  PS+S    S  P+       P   P  PS+S  S 
Sbjct: 1597 SYSPTSPSYSPTS-----PSYSPTSPSYSPTSPSYSPT------SPSYSPTSPSYSPTSP 1645

Query: 702  IVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPP 761
                T+    P  P   P  P+  P S     ++P + SPTS S  P     P   P  P
Sbjct: 1646 SYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSP---TSPNYSPTSP 1701

Query: 762  PPPPSSLGKITNKLQLAPTSQPAVPPPPPP 791
               P+S G        +P            
Sbjct: 1702 SYSPTSPGYSPGSPAYSPKQDEQKHNENEN 1731

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 85.1 bits (210), Expect = 8e-17
 Identities = 58/287 (20%), Positives = 83/287 (28%), Gaps = 22/287 (7%)

Query: 605  PPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPP 664
            P               +   + S +V           F    S  + S S+         
Sbjct: 1455 PEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMF----SPLVDSGSNDAMAGGFTA 1510

Query: 665  PPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAA 724
               +  G+ +S   +     + P      P FS  S     T+    P  P   P  P+ 
Sbjct: 1511 YGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSY 1570

Query: 725  GPNSSKALLSAPPHP--SPTSRSSQPSFHPPPPPPPPPPPPP--------PSSLGKITNK 774
             P S     ++P +   SP+   + PS+ P  P   P  P          P+S       
Sbjct: 1571 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1630

Query: 775  LQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPP---PPPPPLGPAR 831
               +PTS    P  P   P    TS   +P  P      P  +P  P   P  P   P  
Sbjct: 1631 PSYSPTSPSYSPTSPSYSP----TSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1686

Query: 832  SGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPPPGVKSSSVPPPPLPS 878
                   P  +P  P + SP S G  P  P     +          S
Sbjct: 1687 PSYSPTSPNYSPTSP-SYSPTSPGYSPGSPAYSPKQDEQKHNENENS 1732

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 81.7 bits (201), Expect = 1e-15
 Identities = 56/251 (22%), Positives = 75/251 (29%), Gaps = 14/251 (5%)

Query: 630  VPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFS-GKGSSSLPSTSSIGSPPP 688
              P             G +   + S +            FS    S S  + +   +   
Sbjct: 1453 YMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYG 1512

Query: 689  PPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPP-PPAAGPNSSKALLSAPPHPSPTSRSSQ 747
                  + S   +   + TS G     P   P  P   P S        P  SPTS S  
Sbjct: 1513 GADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTS--------PAYSPTSPSYS 1564

Query: 748  PSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPP 807
            P+     P  P   P  PS      +    +P+  P  P   P  P    TS   +P  P
Sbjct: 1565 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1624

Query: 808  PSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKL-PTAP--SPPSRGVMPSPPPPP 864
                  P  +P  P   P   P+ S       P +P   PT+P  SP S    P+ P   
Sbjct: 1625 SYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYS 1683

Query: 865  GVKSSSVPPPP 875
                S  P  P
Sbjct: 1684 PTSPSYSPTSP 1694

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 63.2 bits (153), Expect = 4e-10
 Identities = 46/237 (19%), Positives = 61/237 (25%), Gaps = 30/237 (12%)

Query: 657  GPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPP 716
              P             G +   + S + +          FS       +    G      
Sbjct: 1453 YMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYG 1512

Query: 717  PPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQ 776
                  A  P             +PTS          P      P   P+S         
Sbjct: 1513 GADYGEATSP-------FGAYGEAPTS----------PGFGVSSPGFSPTSPTY------ 1549

Query: 777  LAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVL 836
             +PTS    P  P   P S S S P +P   P+       +P   P  P   P       
Sbjct: 1550 -SPTSPAYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS--- 1604

Query: 837  PPPPPAPKL-PTAPSPPSRGVMPSPPPPPGVKSSSVPPPPLPSVGKGKVTSGPASHG 892
               P +P   PT+PS        SP  P    +S    P  PS      +  P S  
Sbjct: 1605 -YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1660

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 57.8 bits (139), Expect = 2e-08
 Identities = 40/209 (19%), Positives = 54/209 (25%), Gaps = 19/209 (9%)

Query: 690  PPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPS 749
            P    +          T                     S       P   S ++ +    
Sbjct: 1455 PEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFS-------PLVDSGSNDAMAGG 1507

Query: 750  FHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPS 809
            F             P  + G        APTS       P   P S + S P +P   P+
Sbjct: 1508 FTAYGGADYGEATSPFGAYG-------EAPTSPGFGVSSPGFSPTSPTYS-PTSPAYSPT 1559

Query: 810  IGCKPINAPRPPPPPP---PLGPARSGAVLPPPPPAPKL-PTAPSPPSRGVMPSPPPPPG 865
                   +P   P  P   P  P+ S       P +P   PT+PS        SP  P  
Sbjct: 1560 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1619

Query: 866  VKSSSVPPPPLPSVGKGKVTSGPASHGRG 894
              +S    P  PS      +  P S    
Sbjct: 1620 SPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1648

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 80.3 bits (197), Expect = 2e-15
 Identities = 27/227 (11%), Positives = 48/227 (21%), Gaps = 3/227 (1%)

Query: 631 PPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPP 690
                 P     YG+ ++ +   +   PP  P     S+   G     +  S+G      
Sbjct: 4   HKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLT 63

Query: 691 PPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSF 750
           P       +     ++ +       P   P     P     + +          +     
Sbjct: 64  PAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQ 123

Query: 751 HPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPP--- 807
                     P      +  +T             PP   P  +    S      P    
Sbjct: 124 PSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIR 183

Query: 808 PSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSR 854
            ++   P N+        P G              P          R
Sbjct: 184 STLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLIVR 230

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 76.8 bits (188), Expect = 2e-14
 Identities = 28/174 (16%), Positives = 45/174 (25%), Gaps = 11/174 (6%)

Query: 595 MPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTS 654
           M     R  P         A      + ++  +  +PP  P     S+   G     +  
Sbjct: 1   MSHHKKRVYPQAQLQYGQNA------TPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVP 54

Query: 655 SIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPP 714
           S+G      P       +   +  S + +     P   P ++       P    +   P 
Sbjct: 55  SMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQ-----PQVPVQMGTPL 109

Query: 715 PPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSL 768
                P  A       A +     P             PPP      PPPP  +
Sbjct: 110 QQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVI 163

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 70.6 bits (172), Expect = 2e-12
 Identities = 32/176 (18%), Positives = 42/176 (23%), Gaps = 11/176 (6%)

Query: 688 PPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQ 747
           P        +              P    PP  P AAG +  +     PP  +  S   Q
Sbjct: 10  PQAQLQYGQNATPL--------QQPAQFMPPQDPAAAGMSYGQM--GMPPQGAVPSMGQQ 59

Query: 748 PSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPP 807
               P             +S+  +            A   P  P+           P   
Sbjct: 60  QFLTPAQEQLHQQIDQATTSMNDMHLHNV-PLVDPNAYMQPQVPVQMGTPLQQQQQPMAA 118

Query: 808 PSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPP 863
           P+ G       +   P   L P      LPPP     LP  P       M  P   
Sbjct: 119 PAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSEL 174

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 69.1 bits (168), Expect = 6e-12
 Identities = 34/258 (13%), Positives = 48/258 (18%), Gaps = 37/258 (14%)

Query: 562 PPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSS 621
           P   L    N   +  P    PP         P  +  S G    PP    P+       
Sbjct: 10  PQAQLQYGQNATPLQQPAQFMPPQ-------DPAAAGMSYGQMGMPPQGAVPSMGQ---- 58

Query: 622 AVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTS 681
                         P                               S +     ++P   
Sbjct: 59  ---------QQFLTPAQEQ-----------------LHQQIDQATTSMNDMHLHNVPLVD 92

Query: 682 SIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSP 741
                 P  P       +    P        P                  LL+  P P  
Sbjct: 93  PNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPIT 152

Query: 742 TSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIP 801
                 P    PP     P     +S   I + L   P +   +     P          
Sbjct: 153 DLTLPPPPLVIPPERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQH 212

Query: 802 MAPPPPPSIGCKPINAPR 819
           +     P    +     R
Sbjct: 213 LYDDIDPPPLNEDGLIVR 230

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 67.9 bits (165), Expect = 1e-11
 Identities = 17/165 (10%), Positives = 33/165 (20%)

Query: 503 SPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPPPP 562
           S    +           ++         +P   P  +        +P       +     
Sbjct: 2   SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQF 61

Query: 563 PPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSA 622
             P     +                +     P      + P     P           + 
Sbjct: 62  LTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAY 121

Query: 623 VRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPP 667
            + ++++     P               P T    PPPP   PP 
Sbjct: 122 GQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPE 166

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 67.9 bits (165), Expect = 1e-11
 Identities = 27/192 (14%), Positives = 41/192 (21%), Gaps = 12/192 (6%)

Query: 705 STTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPP 764
           S   K   P         A            PP     +  S      PP    P     
Sbjct: 2   SHHKKRVYPQAQLQYGQNATPLQQPAQ--FMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQ 59

Query: 765 PSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPP 824
                       L P  +                 +   P   P+   +P    +   P 
Sbjct: 60  Q----------FLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPL 109

Query: 825 PPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPPPGVKSSSVPPPPLPSVGKGKV 884
                  +      P  A      P      +      PP +   ++PPPPL    +  +
Sbjct: 110 QQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERML 169

Query: 885 TSGPASHGRGRL 896
                S+     
Sbjct: 170 VPSELSNASPDY 181

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 67.5 bits (164), Expect = 2e-11
 Identities = 24/197 (12%), Positives = 42/197 (21%), Gaps = 12/197 (6%)

Query: 497 PPCFPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSF 556
                 +P    +    P  P  +  +     +P   + P         P          
Sbjct: 15  QYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQE------- 67

Query: 557 LSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFS 616
                      +++ N+      P   P  +             +    P   P     S
Sbjct: 68  --QLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPS 125

Query: 617 GKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSS 676
                 +R  + + P       PP          P          P     +      S+
Sbjct: 126 AAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRST 185

Query: 677 L---PSTSSIGSPPPPP 690
           L   P  SS+      P
Sbjct: 186 LNAVPKNSSLLKKSKLP 202

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 62.5 bits (151), Expect = 5e-10
 Identities = 20/146 (13%), Positives = 27/146 (18%), Gaps = 6/146 (4%)

Query: 495 GNPPCFPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNN 554
             PP  P +          PP     S      + P                      N 
Sbjct: 29  FMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNV 88

Query: 555 SFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPA 614
             + P     P         +     P   P          PS        P     P  
Sbjct: 89  PLVDPNAYMQPQVPVQMGTPLQQQQQPMAAP------AYGQPSAAMGQNMRPMNQLYPID 142

Query: 615 FSGKDSSAVRSTSSIVPPPPPPPPPP 640
              +    +   +   PP   PP   
Sbjct: 143 LLTELPPPITDLTLPPPPLVIPPERM 168

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 59.5 bits (143), Expect = 5e-09
 Identities = 14/159 (8%), Positives = 30/159 (18%)

Query: 746 SQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPP 805
           S       P                        P +           P+    S+     
Sbjct: 2   SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQF 61

Query: 806 PPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPPPG 865
             P+         +       +       V P     P++P     P +        P  
Sbjct: 62  LTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAY 121

Query: 866 VKSSSVPPPPLPSVGKGKVTSGPASHGRGRLNSGVSHAP 904
            + S+     +  + +               +  +   P
Sbjct: 122 GQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPP 160

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 70.7 bits (172), Expect = 2e-12
 Identities = 75/502 (14%), Positives = 147/502 (29%), Gaps = 156/502 (31%)

Query: 64  NFREGEKQSEFAEIL--------CEYDVT-VLDYPRQYEGCPLLPMSLIQHFLRVCEHWL 114
           +F  GE Q ++ +IL          +D   V D P+          S++       +H +
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPK----------SILSK--EEIDHII 55

Query: 115 LLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGFLQLLSPL 174
           +  D  +  L             L  +LL   K     ++ +E V R     +  L+SP+
Sbjct: 56  MSKDAVSGTL------------RLFWTLL--SKQEEMVQKFVEEVLR---INYKFLMSPI 98

Query: 175 -----NPFPSQLRYLQYVAR-RNITPEWPP-----PERALSLDCVILRAIPNFDAQNGCR 223
                 P      Y++   R  N    +        +  L L   +L   P         
Sbjct: 99  KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA-------- 150

Query: 224 PIIRIFGRNFRSKGG-----LSTQMIFSMSKKRK--------TLRHYRQADCDVIKIDIQ 270
             + I G       G     ++  +  S   + K         L++    +  V+++ +Q
Sbjct: 151 KNVLIDG-----VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE-TVLEM-LQ 203

Query: 271 CLVQGDVVLECVHLDLD-PEREVMMFRVMFNTAFIRSNILMLNSEN-----LDIL---WD 321
            L           +D +   R      +      I++ +  L         L +L    +
Sbjct: 204 KL--------LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255

Query: 322 SKERYPKGFRAEVLF-----GDVESISPPRAPTSILNGEEKGGLPIEAFSRVRELFSGVE 376
           +K         ++L         + +S        L+       P E     + L     
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV----KSLLLKYL 311

Query: 377 WVDNSDALWLLKQ--------LSVFSD-VKEFTRMQDRGSSYTSPVDSEEENNASSAG-D 426
                D   L ++        LS+ ++ +++     D        V+ ++      +  +
Sbjct: 312 DCRPQD---LPREVLTTNPRRLSIIAESIRDGLATWD----NWKHVNCDKLTTIIESSLN 364

Query: 427 SLD--------EAFDVFPEPLVDTK---KLLLSNAGDSVTSLSKNEGPHDVILVSEPIDQ 475
            L+        +   VFP           LL                    ++  + I  
Sbjct: 365 VLEPAEYRKMFDRLSVFPP---SAHIPTILL-------------------SLIWFDVIKS 402

Query: 476 VSNETVLSSLHQQSLVLTEGNP 497
                V++ LH+ SLV  E  P
Sbjct: 403 DV-MVVVNKLHKYSLV--EKQP 421

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.8 bits (162), Expect = 3e-11
 Identities = 64/425 (15%), Positives = 115/425 (27%), Gaps = 131/425 (30%)

Query: 4   LSRFFYKRP-PDGLL--------EFIERVYVFD-SC---FST---EVVPDGMYQLYLHEI 47
           L R    +P  + LL        +       F+ SC    +T   +V          H  
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWN---AFNLSCKILLTTRFKQVTDFLSAATTTHIS 290

Query: 48  LTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGC-PLLPMSLIQHF 106
           L    +    +          E +S   + L   D    D PR+     P   +S+I   
Sbjct: 291 L----DHHSMT------LTPDEVKSLLLKYL---DCRPQDLPREVLTTNPRR-LSIIAES 336

Query: 107 LRV-CEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPK 165
           +R     W       N    H       L   + +SL     L   E R +         
Sbjct: 337 IRDGLATW------DN--WKHVNC--DKLTTIIESSL---NVLEPAEYRKM--------- 374

Query: 166 GFLQLLSPLNPFPSQLRYLQYVARRNITPE-----WPPPERALSLD----CVILRAIPNF 216
            F +L      FP            +I        W    ++  +           +   
Sbjct: 375 -FDRLSV----FPPSA---------HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV--- 417

Query: 217 DAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTLRHYRQADCDVIKIDIQCLVQGD 276
             +      I I       K  L  +     +  R  + HY            +     D
Sbjct: 418 -EKQPKESTISIPSIYLELKVKLENE----YALHRSIVDHYNI---------PKTFDSDD 463

Query: 277 VVLECV----------HLD-LDPEREVMMFRVMF-NTAFIRSNI------LMLNSENLDI 318
           ++   +          HL  ++    + +FR++F +  F+   I         +   L+ 
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT 523

Query: 319 LWDSK--ERY--PKGFRAEVLFGDVESISPPRAPTSILNGE-----------EKGGLPIE 363
           L   K  + Y      + E L   +     P+   +++  +           E   +  E
Sbjct: 524 LQQLKFYKPYICDNDPKYERLVNAILDFL-PKIEENLICSKYTDLLRIALMAEDEAIFEE 582

Query: 364 AFSRV 368
           A  +V
Sbjct: 583 AHKQV 587

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 6e-07
 Identities = 27/154 (17%), Positives = 50/154 (32%), Gaps = 26/154 (16%)

Query: 2   SLLSRFF-YKRPPDGLLE----FIERVYVFDSCFSTEVVP----DGMYQLYL--HEILTE 50
           S+ S +   K   +         ++  Y     F ++ +     D  +  ++  H    E
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDH-YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485

Query: 51  LHEE---FPDSAFLAFNFREGE-KQSEFAEILCEY---DVTVLDYPRQY--EGCPLLPMS 101
             E    F    FL F F E + +    A          +  L + + Y  +  P     
Sbjct: 486 HPERMTLFRM-VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544

Query: 102 L--IQHFLRVCEHWLLLGDHQNV--ILLHSERGG 131
           +  I  FL   E  L+   + ++  I L +E   
Sbjct: 545 VNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 60.5 bits (146), Expect = 1e-09
 Identities = 29/141 (20%), Positives = 36/141 (25%), Gaps = 24/141 (17%)

Query: 530 PLPMSAPPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSS 589
                  P       P    +S  + FL+   PP  +P        +PPPPP P      
Sbjct: 9   HHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDP------APPPPPAPAA---- 58

Query: 590 KDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSST 649
                 P +T  G          P   G  S A        P P  P   P         
Sbjct: 59  ----GNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAP--------- 105

Query: 650 MPSTSSIGPPPPPPPPPPSFS 670
            P+     P     P P    
Sbjct: 106 -PAAGRAVPGLYHHPVPEPDP 125

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 58.6 bits (141), Expect = 6e-09
 Identities = 26/147 (17%), Positives = 41/147 (27%), Gaps = 14/147 (9%)

Query: 653 TSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPP 712
           +S           P        S+  ++++        PP          VP      PP
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVT--------VPDPAPPPPP 54

Query: 713 PPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKIT 772
            P    PP    G +  + +L  P  P  TS +    +   P P  P   PP +      
Sbjct: 55  APAAGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAG----- 109

Query: 773 NKLQLAPTSQPAVPPPPPPLPKSCSTS 799
            +        P   P P  + +     
Sbjct: 110 -RAVPGLYHHPVPEPDPVRVEEVSRRI 135

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 58.2 bits (140), Expect = 7e-09
 Identities = 28/162 (17%), Positives = 37/162 (22%), Gaps = 33/162 (20%)

Query: 683 IGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPT 742
           +GS                      S   P       P  +    +S  L  A  HP  T
Sbjct: 1   MGSSHHHHHHS--------------SGLVPRGSHMVIPSASVTSAASDFL--AALHPPVT 44

Query: 743 SRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPM 802
                     PPPPP P    PP ++               +V       P    T+   
Sbjct: 45  V-----PDPAPPPPPAPAAGNPPDTVTG------------DSVLQRILRGPTGPGTTSLA 87

Query: 803 APPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPK 844
                         A  PP     +       V  P P   +
Sbjct: 88  PAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPDPVRVE 129

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 57.1 bits (137), Expect = 2e-08
 Identities = 30/147 (20%), Positives = 41/147 (27%), Gaps = 22/147 (14%)

Query: 595 MPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTS 654
           M S            P                       P      +     ++  P  +
Sbjct: 1   MGSSHHHHHHSSGLVPRGSH----------------MVIPSASVTSAASDFLAALHPPVT 44

Query: 655 SIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPP 714
              P PPPPP P +       + P T +  S        P+  G +S+ P+      P P
Sbjct: 45  VPDPAPPPPPAPAA------GNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGP 98

Query: 715 PPPPPPPPAAGPNSSKALLSAPPHPSP 741
             P   PPAAG           P P P
Sbjct: 99  EAPASAPPAAGRAVPGLYHHPVPEPDP 125

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 56.7 bits (136), Expect = 2e-08
 Identities = 24/154 (15%), Positives = 29/154 (18%), Gaps = 25/154 (16%)

Query: 681 SSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPS 740
           SS           P  S       S TS          PP     P        A  +P 
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62

Query: 741 PTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSI 800
                                   P+  G          T+  A        P       
Sbjct: 63  D---------TVTGDSVLQRILRGPTGPG----------TTSLAPAVRYGRQPG------ 97

Query: 801 PMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGA 834
           P AP   P    + +      P P P        
Sbjct: 98  PEAPASAPPAAGRAVPGLYHHPVPEPDPVRVEEV 131

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 56.3 bits (135), Expect = 3e-08
 Identities = 22/148 (14%), Positives = 30/148 (20%), Gaps = 31/148 (20%)

Query: 705 STTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPP 764
           S+           P       P             +  +     + HPP   P P PPPP
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIP---------SASVTSAASDFLAALHPPVTVPDPAPPPP 53

Query: 765 PSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPP 824
           P                    PP            +     P  +       +  P    
Sbjct: 54  P--------------APAAGNPPDTVTGDSVLQRILRGPTGPGTT-------SLAPAVRY 92

Query: 825 PPLGPARSGAVLPPPPPAPKLPTAPSPP 852
               P        PP     +P     P
Sbjct: 93  GRQ-PGPEAPASAPPAAGRAVPGLYHHP 119

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 55.9 bits (134), Expect = 4e-08
 Identities = 22/148 (14%), Positives = 32/148 (21%), Gaps = 17/148 (11%)

Query: 734 SAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLP 793
           S+  H   +S             P        S                   PP   P P
Sbjct: 3   SSHHHHHHSSGLVPRG--SHMVIPSASVTSAASDFLA------------ALHPPVTVPDP 48

Query: 794 KSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPS 853
                  P A  PP +      ++        P GP  +             P AP+   
Sbjct: 49  APPPPPAPAAGNPPDT---VTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAP 105

Query: 854 RGVMPSPPPPPGVKSSSVPPPPLPSVGK 881
                + P           P  +  V +
Sbjct: 106 PAAGRAVPGLYHHPVPEPDPVRVEEVSR 133

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 54.4 bits (130), Expect = 1e-07
 Identities = 23/134 (17%), Positives = 36/134 (26%), Gaps = 5/134 (3%)

Query: 494 EGNPPCFPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTN 553
             +       P     + P+  +   +S   A+   P+ +  P P PPP P    P  T 
Sbjct: 6   HHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTV 65

Query: 554 NSFLSPPP-PPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPP 612
                       P    T +   +      P P    +  +  P    R  P     P P
Sbjct: 66  TGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGP----EAPASAPPAAGRAVPGLYHHPVP 121

Query: 613 PAFSGKDSSAVRST 626
                +     R  
Sbjct: 122 EPDPVRVEEVSRRI 135

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 53.2 bits (127), Expect = 3e-07
 Identities = 24/155 (15%), Positives = 36/155 (23%), Gaps = 20/155 (12%)

Query: 495 GNPPCFPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNN 554
           G+        S          +P  S  ++AS      +  P   P P PPPP   +   
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMVIPSASVTSAASDF-LAALHPPVTVPDPAPPPPPAPA--- 57

Query: 555 SFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPA 614
                  PP  +   +             P         P  +  +        P P   
Sbjct: 58  ----AGNPPDTVTGDS-----VLQRILRGPT-------GPGTTSLAPAVRYGRQPGPEAP 101

Query: 615 FSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSST 649
            S   ++          P P P P           
Sbjct: 102 ASAPPAAGRAVPGLYHHPVPEPDPVRVEEVSRRIK 136

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 47.4 bits (112), Expect = 2e-05
 Identities = 24/133 (18%), Positives = 32/133 (24%), Gaps = 7/133 (5%)

Query: 781 SQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPP 840
           S          L    S  +  +     +          P   P P  P       PPP 
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPP-------PPPA 55

Query: 841 PAPKLPTAPSPPSRGVMPSPPPPPGVKSSSVPPPPLPSVGKGKVTSGPASHGRGRLNSGV 900
           PA   P         +      P G  ++S+ P        G      A    GR   G+
Sbjct: 56  PAAGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGL 115

Query: 901 SHAPKKASLKPLH 913
            H P         
Sbjct: 116 YHHPVPEPDPVRV 128

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 47.1 bits (111), Expect = 3e-05
 Identities = 21/98 (21%), Positives = 26/98 (26%), Gaps = 3/98 (3%)

Query: 488 QSLVLTEGNPPCFPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPP 547
            S  L   +PP   P P+ P   AP    PP +    +       +   P  P      P
Sbjct: 32  ASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSV---LQRILRGPTGPGTTSLAP 88

Query: 548 LPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPP 585
                       P   PP            P P P P 
Sbjct: 89  AVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPDPV 126

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 60.7 bits (146), Expect = 2e-09
 Identities = 18/216 (8%), Positives = 31/216 (14%), Gaps = 14/216 (6%)

Query: 534 SAPPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFS 593
           +A P +           S                 +   +              +S+  S
Sbjct: 24  TAVPENSGANTELVSGES-------EHSTNEADKQNEGEHARENKLEKAEGVATASETAS 76

Query: 594 PMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPST 653
           P  +E +            P    K S  V  T S    P                  + 
Sbjct: 77  PASNEAATTETAEAASAAKP--EEKASEVVAETPSAEAKPKSDKETE-----AKPEATNQ 129

Query: 654 SSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPP 713
                P                     +                                
Sbjct: 130 GDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSV 189

Query: 714 PPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPS 749
                         +SK         + +      S
Sbjct: 190 VLASRRTGHLVNEKASKEAKVQALSNTNSKAKDHAS 225

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 59.2 bits (142), Expect = 7e-09
 Identities = 24/216 (11%), Positives = 46/216 (21%), Gaps = 9/216 (4%)

Query: 657 GPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPP 716
           G     P    + +   S     +++                      +   K       
Sbjct: 21  GEETAVPENSGANTELVSGESEHSTNEADKQNEGEHAR---------ENKLEKAEGVATA 71

Query: 717 PPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQ 776
                PA+   ++     A     P  ++S+     P     P       +  + TN+  
Sbjct: 72  SETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGD 131

Query: 777 LAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVL 836
            +  +  A        P     +     P               P         R   VL
Sbjct: 132 ESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVL 191

Query: 837 PPPPPAPKLPTAPSPPSRGVMPSPPPPPGVKSSSVP 872
                   +    S  ++    S         +SV 
Sbjct: 192 ASRRTGHLVNEKASKEAKVQALSNTNSKAKDHASVG 227

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 58.8 bits (141), Expect = 8e-09
 Identities = 19/214 (8%), Positives = 38/214 (17%), Gaps = 8/214 (3%)

Query: 554 NSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPP 613
           N +        P  S  N   +S                +   +E               
Sbjct: 16  NLYFQGEETAVPENSGANTELVSGESEHSTNE-------ADKQNEGEHARENKLEKAEGV 68

Query: 614 AFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKG 673
           A + + +S   + ++                K S  +  T S    P       +     
Sbjct: 69  ATASETASPASNEAATTETAEAASAAKP-EEKASEVVAETPSAEAKPKSDKETEAKPEAT 127

Query: 674 SSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALL 733
           +    S  +  +        P     +                     P A  + +    
Sbjct: 128 NQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRG 187

Query: 734 SAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSS 767
           S       T                       + 
Sbjct: 188 SVVLASRRTGHLVNEKASKEAKVQALSNTNSKAK 221

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 58.4 bits (140), Expect = 9e-09
 Identities = 18/213 (8%), Positives = 38/213 (17%)

Query: 641 SFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRS 700
           + Y +G  T    +S              + +         +  +         + S  +
Sbjct: 16  NLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETA 75

Query: 701 SIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPP 760
           S   +  +            P            SA   P     +              P
Sbjct: 76  SPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKP 135

Query: 761 PPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRP 820
                 +  ++   +                  +      P A           + A R 
Sbjct: 136 AAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRR 195

Query: 821 PPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPS 853
                    ++   V        K     S   
Sbjct: 196 TGHLVNEKASKEAKVQALSNTNSKAKDHASVGG 228

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 56.1 bits (134), Expect = 5e-08
 Identities = 16/195 (8%), Positives = 33/195 (16%), Gaps = 8/195 (4%)

Query: 684 GSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTS 743
           G     P    +         +    G              G ++ +  L      +  S
Sbjct: 21  GEETAVPENSGA--------NTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATAS 72

Query: 744 RSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMA 803
            ++ P+ +                  K +  +   P+++           K  +T+    
Sbjct: 73  ETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDE 132

Query: 804 PPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPP 863
             P               P                     K              S    
Sbjct: 133 SKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLA 192

Query: 864 PGVKSSSVPPPPLPS 878
                  V       
Sbjct: 193 SRRTGHLVNEKASKE 207

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 56.1 bits (134), Expect = 6e-08
 Identities = 13/198 (6%), Positives = 34/198 (17%), Gaps = 8/198 (4%)

Query: 681 SSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPS 740
           +          P  S +    +   +                          ++     +
Sbjct: 16  NLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETA 75

Query: 741 PTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSI 800
             + +   +           P    S +   T        ++P         P++ +   
Sbjct: 76  SPASNEAATTETAEAASAAKPEEKASEVVAETPS----AEAKPKSDKETEAKPEATNQ-- 129

Query: 801 PMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSP 860
                  P+           P  P           +        L   P       +   
Sbjct: 130 --GDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRG 187

Query: 861 PPPPGVKSSSVPPPPLPS 878
                 + +        S
Sbjct: 188 SVVLASRRTGHLVNEKAS 205

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 56.1 bits (134), Expect = 6e-08
 Identities = 14/192 (7%), Positives = 29/192 (15%), Gaps = 4/192 (2%)

Query: 686 PPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPA--AGPNSSKALLSAPPHPSPTS 743
           P          SG S    ST                   A   ++ +  ++P      +
Sbjct: 27  PENSGANTELVSGESE--HSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAAT 84

Query: 744 RSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMA 803
             +  +     P          +   +   K      ++P           +   +    
Sbjct: 85  TETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEK 144

Query: 804 PPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPP 863
              P                                  A    +      R         
Sbjct: 145 EVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRTGHLVNEKA 204

Query: 864 PGVKSSSVPPPP 875
                       
Sbjct: 205 SKEAKVQALSNT 216

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 55.4 bits (132), Expect = 1e-07
 Identities = 10/199 (5%), Positives = 31/199 (15%), Gaps = 3/199 (1%)

Query: 593 SPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPS 652
           + +P  +                   ++                    +   + +S   +
Sbjct: 24  TAVPENSGANTELVSGESEHST---NEADKQNEGEHARENKLEKAEGVATASETASPASN 80

Query: 653 TSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPP 712
            ++                       + S+   P             +    S  +    
Sbjct: 81  EAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEAN 140

Query: 713 PPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKIT 772
                  P        +        +        +P                    G + 
Sbjct: 141 KTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRTGHLV 200

Query: 773 NKLQLAPTSQPAVPPPPPP 791
           N+         A+      
Sbjct: 201 NEKASKEAKVQALSNTNSK 219

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 54.2 bits (129), Expect = 2e-07
 Identities = 14/200 (7%), Positives = 35/200 (17%), Gaps = 5/200 (2%)

Query: 512 PTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPSSTN 571
             P     ++   +         A   +                            S  +
Sbjct: 25  AVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKA-----EGVATASETASPAS 79

Query: 572 NNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVP 631
           N   +             +  S + +ET      P       A     +    S  +   
Sbjct: 80  NEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEA 139

Query: 632 PPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPP 691
                   P        T+                   + +  +    +  + S      
Sbjct: 140 NKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRTGHL 199

Query: 692 PPPSFSGRSSIVPSTTSKGP 711
                S  + +   + +   
Sbjct: 200 VNEKASKEAKVQALSNTNSK 219

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 53.8 bits (128), Expect = 3e-07
 Identities = 15/247 (6%), Positives = 39/247 (15%), Gaps = 32/247 (12%)

Query: 591 DFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTM 650
               +  +      P          SG+                                
Sbjct: 13  QLENLYFQGEETAVPENSGANTELVSGES-----------EHSTNEADKQ---------- 51

Query: 651 PSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKG 710
                            + + + +S   + ++                          K 
Sbjct: 52  NEGEHARENKLEKAEGVATASETASPASNEAATTETAEAASAAK-----------PEEKA 100

Query: 711 PPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGK 770
                  P        +          +    S+ +  +        P  P     +L  
Sbjct: 101 SEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKP 160

Query: 771 ITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPA 830
              K           P        +  + +  +      +  K     +          A
Sbjct: 161 KEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRTGHLVNEKASKEAKVQALSNTNSKA 220

Query: 831 RSGAVLP 837
           +  A + 
Sbjct: 221 KDHASVG 227

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 50.3 bits (119), Expect = 3e-06
 Identities = 11/153 (7%), Positives = 28/153 (18%), Gaps = 15/153 (9%)

Query: 727 NSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVP 786
                         P +  +                   +              ++    
Sbjct: 13  QLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNE----------GEHARENKL 62

Query: 787 PPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLP 846
                +  +  T+ P +     +   +  +A +P      +         P     PK  
Sbjct: 63  EKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAET-----PSAEAKPKSD 117

Query: 847 TAPSPPSRGVMPSPPPPPGVKSSSVPPPPLPSV 879
                            P  +++       P V
Sbjct: 118 KETEAKPEATNQGDESKPAAEANKTEKEVQPDV 150

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 50.3 bits (119), Expect = 3e-06
 Identities = 12/178 (6%), Positives = 31/178 (17%), Gaps = 23/178 (12%)

Query: 711 PPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGK 770
            P          +           +    +   + ++                  S    
Sbjct: 26  VPENSGANTELVSG---------ESEHSTNEADKQNEGEHARENKLEKAEGVATAS---- 72

Query: 771 ITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPA 830
                    T+ PA            +++          +   P  +    P       A
Sbjct: 73  --------ETASPASNEAATTETAEAASAAKPEEKASEVVAETP--SAEAKPKSDKETEA 122

Query: 831 RSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPPPGVKSSSVPPPPLPSVGKGKVTSGP 888
           +  A        P      +               +K   +       + K +  +  
Sbjct: 123 KPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGARE 180

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 45.0 bits (105), Expect = 1e-04
 Identities = 13/153 (8%), Positives = 17/153 (11%), Gaps = 22/153 (14%)

Query: 738 HPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCS 797
           H     +     F       P                                   K   
Sbjct: 7   HHGHHHQLENLYFQGEETAVPENSGANT-------------ELVSGESEHSTNEADKQNE 53

Query: 798 TSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVM 857
                                             S                P   +  V+
Sbjct: 54  GEHARENKLEK---------AEGVATASETASPASNEAATTETAEAASAAKPEEKASEVV 104

Query: 858 PSPPPPPGVKSSSVPPPPLPSVGKGKVTSGPAS 890
              P       S       P        S PA+
Sbjct: 105 AETPSAEAKPKSDKETEAKPEATNQGDESKPAA 137

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 56.6 bits (136), Expect = 2e-08
 Identities = 17/141 (12%), Positives = 26/141 (18%), Gaps = 9/141 (6%)

Query: 631 PPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPP 690
                     +      ++     S+  P   P   P            +      P   
Sbjct: 8   HVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGI---------GSPGQLHSPIST 58

Query: 691 PPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSF 750
              P           ++  GP     P  P       S +      P  S          
Sbjct: 59  LSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGL 118

Query: 751 HPPPPPPPPPPPPPPSSLGKI 771
           +     P  P     S    I
Sbjct: 119 NGVLKVPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 56.3 bits (135), Expect = 4e-08
 Identities = 26/138 (18%), Positives = 37/138 (26%), Gaps = 7/138 (5%)

Query: 658 PPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPP 717
                      FS + +SSL S +  GS   P   P          P   S G    P  
Sbjct: 5   HHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLG-------PGIGSPGQLHSPIS 57

Query: 718 PPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQL 777
               P  G     +++S+P  P   S  + P+       P    P  P S  +       
Sbjct: 58  TLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLG 117

Query: 778 APTSQPAVPPPPPPLPKS 795
                     P   +   
Sbjct: 118 LNGVLKVPAHPSGNMASF 135

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 55.9 bits (134), Expect = 5e-08
 Identities = 25/151 (16%), Positives = 35/151 (23%), Gaps = 19/151 (12%)

Query: 577 PPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPP 636
                     FS++  S + S T RG    P   P              +   +  P   
Sbjct: 6   HHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPG-------IGSPGQLHSPIST 58

Query: 637 PPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSF 696
              P             + +GPP      P         + P+       P    P    
Sbjct: 59  LSSPI------------NGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPV 106

Query: 697 SGRSSIVPSTTSKGPPPPPPPPPPPPAAGPN 727
           S    I P     G    P  P    A+   
Sbjct: 107 SSSEDIKPPLGLNGVLKVPAHPSGNMASFTK 137

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 55.1 bits (132), Expect = 8e-08
 Identities = 21/153 (13%), Positives = 31/153 (20%), Gaps = 19/153 (12%)

Query: 511 APTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPSST 570
                          +  +  P      + P   P   P   +   L  P      P   
Sbjct: 6   HHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPI-- 63

Query: 571 NNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIV 630
             N + PP      P                GP     P  P       S  + S  + V
Sbjct: 64  --NGMGPPFSVISSPM---------------GPHSMSVPTTPTLGFSTGSPQLSSPMNPV 106

Query: 631 PPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPP 663
                  PP    G        + ++       
Sbjct: 107 SSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 55.1 bits (132), Expect = 8e-08
 Identities = 24/133 (18%), Positives = 36/133 (27%), Gaps = 3/133 (2%)

Query: 603 PPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMP---STSSIGPP 659
                             ++     S+  P   P   P     G    P    +S I   
Sbjct: 7   HHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGM 66

Query: 660 PPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPP 719
            PP     S  G  S S+P+T ++G     P      +  SS        G       P 
Sbjct: 67  GPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPA 126

Query: 720 PPPAAGPNSSKAL 732
            P     + +K +
Sbjct: 127 HPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 55.1 bits (132), Expect = 8e-08
 Identities = 22/140 (15%), Positives = 33/140 (23%), Gaps = 2/140 (1%)

Query: 533 MSAPPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDF 592
           M+               +  N+S  SP         S + +    P    P    S    
Sbjct: 1   MAHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPS--LGPGIGSPGQLHSPIST 58

Query: 593 SPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPS 652
              P      P      P  P      ++     S+  P    P  P S        +  
Sbjct: 59  LSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGL 118

Query: 653 TSSIGPPPPPPPPPPSFSGK 672
              +  P  P     SF+  
Sbjct: 119 NGVLKVPAHPSGNMASFTKH 138

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 54.7 bits (131), Expect = 1e-07
 Identities = 27/148 (18%), Positives = 43/148 (29%), Gaps = 12/148 (8%)

Query: 716 PPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKL 775
                        S  + S+   P+     + PS HP   P    P    S +       
Sbjct: 4   HHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPIS------ 57

Query: 776 QLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAV 835
               +S      PP  +  S      M+ P  P++G     +   P    P+ P  S   
Sbjct: 58  --TLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLG----FSTGSPQLSSPMNPVSSSED 111

Query: 836 LPPPPPAPKLPTAPSPPSRGVMPSPPPP 863
           + PP     +   P+ PS  +       
Sbjct: 112 IKPPLGLNGVLKVPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 53.2 bits (127), Expect = 3e-07
 Identities = 23/153 (15%), Positives = 34/153 (22%), Gaps = 11/153 (7%)

Query: 683 IGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPT 742
           +                + +  S TS         P   P+ GP           H   +
Sbjct: 1   MAHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGS---PGQLHSPIS 57

Query: 743 SRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPM 802
           + SS  +   PP      P  P S          +  T         P L    +     
Sbjct: 58  TLSSPINGMGPPFSVISSPMGPHSM--------SVPTTPTLGFSTGSPQLSSPMNPVSSS 109

Query: 803 APPPPPSIGCKPINAPRPPPPPPPLGPARSGAV 835
               PP      +  P  P            A+
Sbjct: 110 EDIKPPLGLNGVLKVPAHPSGNMASFTKHICAI 142

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 52.8 bits (126), Expect = 4e-07
 Identities = 22/143 (15%), Positives = 30/143 (20%), Gaps = 8/143 (5%)

Query: 494 EGNPPCFPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTN 553
             +         S Q  +         S A+ S    L      P     P   L S  N
Sbjct: 5   HHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPIN 64

Query: 554 NSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPP 613
              + PP      P              P  P       SP  S             PP 
Sbjct: 65  --GMGPPFSVISSPMG------PHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPL 116

Query: 614 AFSGKDSSAVRSTSSIVPPPPPP 636
             +G        + ++       
Sbjct: 117 GLNGVLKVPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 52.4 bits (125), Expect = 6e-07
 Identities = 22/140 (15%), Positives = 32/140 (22%), Gaps = 8/140 (5%)

Query: 502 PSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPPP 561
                              + +  S      M+AP   P   P    P   +        
Sbjct: 2   AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLH-------- 53

Query: 562 PPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSS 621
            P    SS  N    P      P    S      P+       P    P  P  S +D  
Sbjct: 54  SPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIK 113

Query: 622 AVRSTSSIVPPPPPPPPPPS 641
                + ++  P  P    +
Sbjct: 114 PPLGLNGVLKVPAHPSGNMA 133

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 50.5 bits (120), Expect = 2e-06
 Identities = 19/146 (13%), Positives = 31/146 (21%), Gaps = 8/146 (5%)

Query: 520 SSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPP 579
           +            M +   +     P    S    S      P    P   +      P 
Sbjct: 2   AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLH-----SPI 56

Query: 580 PPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPP 639
                P         + S          P  P   FS   + + + +S + P        
Sbjct: 57  STLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFS---TGSPQLSSPMNPVSSSEDIK 113

Query: 640 PSFYGKGSSTMPSTSSIGPPPPPPPP 665
           P     G   +P+  S          
Sbjct: 114 PPLGLNGVLKVPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 50.1 bits (119), Expect = 3e-06
 Identities = 30/143 (20%), Positives = 42/143 (29%), Gaps = 14/143 (9%)

Query: 476 VSNETVLSSLHQQSLVLTEGNPPCFPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSA 535
             ++ + S+    SL    G      PS           P   HS  ++ S   P+    
Sbjct: 10  DDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSS--PINGMG 67

Query: 536 PPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPM 595
           PP S    P  P      +S   P  P     +       SP    P  P  SS+D  P 
Sbjct: 68  PPFSVISSPMGP------HSMSVPTTPTLGFSTG------SPQLSSPMNPVSSSEDIKPP 115

Query: 596 PSETSRGPPPPPPPPPPPAFSGK 618
                    P  P     +F+  
Sbjct: 116 LGLNGVLKVPAHPSGNMASFTKH 138

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 47.4 bits (112), Expect = 2e-05
 Identities = 22/140 (15%), Positives = 27/140 (19%), Gaps = 6/140 (4%)

Query: 735 APPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPK 794
                      S         P        PS          L P          P    
Sbjct: 6   HHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHP------SLGPGIGSPGQLHSPISTL 59

Query: 795 SCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSR 854
           S   +    P    S    P +   P  P             P  P +      P     
Sbjct: 60  SSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLN 119

Query: 855 GVMPSPPPPPGVKSSSVPPP 874
           GV+  P  P G  +S     
Sbjct: 120 GVLKVPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 42.4 bits (99), Expect = 7e-04
 Identities = 14/88 (15%), Positives = 19/88 (21%)

Query: 500 FPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSP 559
            P S  S       PP    SSP     +          S   P      +  ++S    
Sbjct: 54  SPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIK 113

Query: 560 PPPPPPLPSSTNNNFISPPPPPPPPPCF 587
           PP           +            C 
Sbjct: 114 PPLGLNGVLKVPAHPSGNMASFTKHICA 141

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 55.5 bits (132), Expect = 6e-08
 Identities = 29/168 (17%), Positives = 37/168 (22%)

Query: 711 PPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGK 770
           P PP   PP      P+ ++  L AP   +  SR        P      PP      L  
Sbjct: 15  PGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSV 74

Query: 771 ITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPA 830
                   P +      P P      ST     PP   S   +   +             
Sbjct: 75  DEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELG 134

Query: 831 RSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPPPGVKSSSVPPPPLPS 878
                L            P    R   P     P  +       P   
Sbjct: 135 ARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLP 182

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 53.6 bits (127), Expect = 3e-07
 Identities = 30/173 (17%), Positives = 41/173 (23%)

Query: 674 SSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALL 733
               P   +        P P   + R+    ++ S+    PP  P    A  P   +  L
Sbjct: 13  RRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRL 72

Query: 734 SAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLP 793
           S     SP++  +      P P        P +         Q   T             
Sbjct: 73  SVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARE 132

Query: 794 KSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLP 846
                    A        C P    RP  P     PA         P  P L 
Sbjct: 133 LGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPGLV 185

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 53.2 bits (126), Expect = 4e-07
 Identities = 24/168 (14%), Positives = 35/168 (20%)

Query: 624 RSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSI 683
                I PP      P        +   +TS       PP  P     +  +      S+
Sbjct: 15  PGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSV 74

Query: 684 GSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTS 743
                P  P                K  P    PP    A   ++   L S         
Sbjct: 75  DEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELG 134

Query: 744 RSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPP 791
              +              P       +   +   A     A+  P  P
Sbjct: 135 ARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLP 182

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 51.7 bits (122), Expect = 1e-06
 Identities = 24/160 (15%), Positives = 37/160 (23%)

Query: 497 PPCFPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSF 556
             C  PSP+ P   AP          A          + PP            SS +   
Sbjct: 25  LACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSVDEVSSPSTPE 84

Query: 557 LSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFS 616
               P  P        +  +   PP           S + S   R            A +
Sbjct: 85  APDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELGARVRALKASA 144

Query: 617 GKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSI 656
                +    +   P  P     P++    +   P    +
Sbjct: 145 QDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPGL 184

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 51.7 bits (122), Expect = 1e-06
 Identities = 18/160 (11%), Positives = 32/160 (20%), Gaps = 2/160 (1%)

Query: 647 SSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPST 706
           +   P    I PP      P        +   +TS       PP  P     R       
Sbjct: 11  ARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPP--ARR 68

Query: 707 TSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPS 766
             +        P  P A    +  +        +P +                       
Sbjct: 69  RLRLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQ 128

Query: 767 SLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPP 806
              ++  +++    S         P  +           P
Sbjct: 129 RARELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAP 168

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 51.3 bits (121), Expect = 1e-06
 Identities = 23/169 (13%), Positives = 36/169 (21%)

Query: 593 SPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPS 652
              P    R P P  P    PA +   S       +        PP           + S
Sbjct: 20  IAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSVDEVSS 79

Query: 653 TSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPP 712
            S+   P  P  P P    K S+         +           +          ++   
Sbjct: 80  PSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELGARVRA 139

Query: 713 PPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPP 761
                     +  P +           +P  +       P  P    P 
Sbjct: 140 LKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPGLVLPY 188

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 25/167 (14%), Positives = 38/167 (22%), Gaps = 6/167 (3%)

Query: 555 SFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPA 614
            F +   P PP  +       +P P  P     +S              P      PP  
Sbjct: 8   DFFARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPAR 67

Query: 615 FSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGS 674
              + S    S+ S    P  P  P              S+     PP           S
Sbjct: 68  RRLRLSVDEVSSPSTPEAPDIPACPS------PGQKIKKSTPAAGQPPHLTSAQDQDTIS 121

Query: 675 SSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPP 721
                               + +  +    +  ++G P  P     P
Sbjct: 122 ELASCLQRARELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAP 168

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 49.0 bits (115), Expect = 7e-06
 Identities = 25/178 (14%), Positives = 40/178 (22%), Gaps = 1/178 (0%)

Query: 511 APTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPSST 570
           A   P PP  +P   +   P P      +P          +   +        PP     
Sbjct: 11  ARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRL 70

Query: 571 NNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRS-TSSI 629
             +      P  P         SP        P    PP    A      S + S     
Sbjct: 71  RLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRA 130

Query: 630 VPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPP 687
                      +       +    +   P  P     P++    + + P    +  P 
Sbjct: 131 RELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPGLVLPY 188

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 48.6 bits (114), Expect = 8e-06
 Identities = 31/180 (17%), Positives = 43/180 (23%), Gaps = 6/180 (3%)

Query: 500 FPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSP 559
           F      P  IAP        SPA  +   P   ++       PP  P            
Sbjct: 10  FARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQA------R 63

Query: 560 PPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKD 619
           PP    L  S +       P  P  P   S       S  + G PP            + 
Sbjct: 64  PPARRRLRLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISEL 123

Query: 620 SSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPS 679
           +S ++    +              G+  +         P     P    F       LP 
Sbjct: 124 ASCLQRARELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPG 183

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 28/192 (14%), Positives = 41/192 (21%), Gaps = 19/192 (9%)

Query: 686 PPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRS 745
           P PP   PP  + R+          P P  P    P +A   S K            +R 
Sbjct: 15  PGPPRIAPPKLACRT----------PSPARPALRAPASATSGSRKRARPPAAPGRDQARP 64

Query: 746 SQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPP 805
                          P  P +                      PP L  +          
Sbjct: 65  PARRRLRLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELA 124

Query: 806 PPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPPPG 865
                        R       +   ++ A        P+    P  P     P+      
Sbjct: 125 SCL---------QRARELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHA 175

Query: 866 VKSSSVPPPPLP 877
           +    +P   LP
Sbjct: 176 LAQPGLPGLVLP 187

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 45.9 bits (107), Expect = 6e-05
 Identities = 24/184 (13%), Positives = 35/184 (19%), Gaps = 11/184 (5%)

Query: 631 PPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPP 690
           P PP   PP        +    + +      P           S       +        
Sbjct: 15  PGPPRIAPPKL------ACRTPSPARPALRAPASATSG-----SRKRARPPAAPGRDQAR 63

Query: 691 PPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSF 750
           PP       S    S+ S    P  P  P P      S+ A    P   S   + +    
Sbjct: 64  PPARRRLRLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISEL 123

Query: 751 HPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSI 810
                          +      +  +         P  P                P    
Sbjct: 124 ASCLQRARELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPG 183

Query: 811 GCKP 814
              P
Sbjct: 184 LVLP 187

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 42.8 bits (99), Expect = 5e-04
 Identities = 18/152 (11%), Positives = 32/152 (21%)

Query: 739 PSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCST 798
             P      P       P P  P     +     ++ +  P + P      PP  +    
Sbjct: 13  RRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRL 72

Query: 799 SIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMP 858
           S+     P           P P        PA                +  +   +    
Sbjct: 73  SVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARE 132

Query: 859 SPPPPPGVKSSSVPPPPLPSVGKGKVTSGPAS 890
                  +K+S+       +         P  
Sbjct: 133 LGARVRALKASAQDAGESCTPEAEGRPEEPCG 164

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 53.1 bits (127), Expect = 1e-07
 Identities = 30/157 (19%), Positives = 38/157 (24%), Gaps = 5/157 (3%)

Query: 613 PAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGK 672
            + + +      +  + VP       P      G            P     P     G 
Sbjct: 78  VSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGP 137

Query: 673 GSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKAL 732
               +                 S +G  +  P      PPP     PPP   GP      
Sbjct: 138 SQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRP 197

Query: 733 LSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLG 769
              PP   P          P   PPP   PPPP   G
Sbjct: 198 PMGPPMGIP-----PGRGTPMGMPPPGMRPPPPGMRG 229

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 52.0 bits (124), Expect = 2e-07
 Identities = 30/166 (18%), Positives = 41/166 (24%), Gaps = 17/166 (10%)

Query: 506 SPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPPPPPPP 565
           + +   P          A A+G   +  +A    P   P P  P+           P   
Sbjct: 81  TVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQ 140

Query: 566 LPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRS 625
           + +      ++            +    P        P     PPP              
Sbjct: 141 VMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGM------------ 188

Query: 626 TSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSG 671
                  PPP   PP     G      T    PPP   PPPP   G
Sbjct: 189 -----MGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRG 229

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 46.2 bits (109), Expect = 2e-05
 Identities = 36/172 (20%), Positives = 42/172 (24%), Gaps = 27/172 (15%)

Query: 675 SSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLS 734
           S                P    +G   I  +     P   P P  P   AGP        
Sbjct: 79  SMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGP-------- 130

Query: 735 APPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPK 794
                 P+ +   P                             APT  P     PPP   
Sbjct: 131 VRGVGGPSQQVMTPQGRGTVAAAAAAATASI----------AGAPTQYPPGRGGPPP--- 177

Query: 795 SCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLP 846
                 PM    PP     P    RPP  PP   P   G  +  PPP  + P
Sbjct: 178 ------PMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPP 223

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 45.4 bits (107), Expect = 4e-05
 Identities = 30/149 (20%), Positives = 37/149 (24%), Gaps = 6/149 (4%)

Query: 649 TMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSG------RSSI 702
            + S +  GPPP             +       + G   P   P P          R   
Sbjct: 76  NLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVG 135

Query: 703 VPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPP 762
            PS     P           AA  + + A    PP              PP    PPP  
Sbjct: 136 GPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGM 195

Query: 763 PPPSSLGKITNKLQLAPTSQPAVPPPPPP 791
            PP          +  P   P     PPP
Sbjct: 196 RPPMGPPMGIPPGRGTPMGMPPPGMRPPP 224

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 45.0 bits (106), Expect = 5e-05
 Identities = 26/123 (21%), Positives = 30/123 (24%), Gaps = 15/123 (12%)

Query: 495 GNPPCFPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNN 554
             P             +     P      +A+        A  P+  PP     P     
Sbjct: 122 QAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGR 181

Query: 555 SFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPA 614
               P    PP             PP  PP         P    T  G PPP   PPPP 
Sbjct: 182 GAPPPGMMGPPPG---------MRPPMGPPMGI------PPGRGTPMGMPPPGMRPPPPG 226

Query: 615 FSG 617
             G
Sbjct: 227 MRG 229

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 52.7 bits (126), Expect = 3e-07
 Identities = 22/154 (14%), Positives = 35/154 (22%), Gaps = 8/154 (5%)

Query: 658 PPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPP 717
                   P   +   +     ++S G P      PP+   RS  V        P     
Sbjct: 7   MSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVT------SPISMTM 60

Query: 718 PPPPPAAGPNSSKALLSAPPH-PSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQ 776
           PP     G  +     S       P   +S P                P+S+  +  +L 
Sbjct: 61  PPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELL 120

Query: 777 LA-PTSQPAVPPPPPPLPKSCSTSIPMAPPPPPS 809
              P            L +  +            
Sbjct: 121 KCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFG 154

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 52.7 bits (126), Expect = 3e-07
 Identities = 23/174 (13%), Positives = 41/174 (23%), Gaps = 17/174 (9%)

Query: 603 PPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPP 662
                    P   +   +     ++S   P      PP+ Y +        S   PP   
Sbjct: 6   AMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGS 65

Query: 663 PPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPP 722
                ++        PS +     P P    P            +  G           P
Sbjct: 66  LQGYQTY-----GHFPSRAIKSEYPDPYTSSP-----------ESIMGYSYMDSYQTSSP 109

Query: 723 AAGPNSSKALLSA-PPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKL 775
           A+ P+    LL   P  P   ++                       + K+ ++ 
Sbjct: 110 ASIPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQT 163

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 48.8 bits (116), Expect = 5e-06
 Identities = 22/142 (15%), Positives = 33/142 (23%), Gaps = 5/142 (3%)

Query: 504 PSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPPPPP 563
            +  Q I   P     SS           +     + PP      P  T+   ++ PP  
Sbjct: 5   EAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHG 64

Query: 564 PPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSG-----K 618
                 T  +F S       P  ++S   S M            P   P           
Sbjct: 65  SLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCEP 124

Query: 619 DSSAVRSTSSIVPPPPPPPPPP 640
           D   V++               
Sbjct: 125 DEPQVQAKIMAYLQQEQANRSK 146

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 47.3 bits (112), Expect = 2e-05
 Identities = 17/155 (10%), Positives = 31/155 (20%), Gaps = 2/155 (1%)

Query: 531 LPMSAPPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPSSTN--NNFISPPPPPPPPPCFS 588
           L + A        P     SS   +  S     P   ++    +   SP    P      
Sbjct: 2   LKLEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMP 61

Query: 589 SKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSS 648
                         P        P  ++    S +  +         P   P    +   
Sbjct: 62  PHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLK 121

Query: 649 TMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSI 683
             P    +             +      L +   +
Sbjct: 122 CEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLM 156

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 20/142 (14%), Positives = 36/142 (25%), Gaps = 11/142 (7%)

Query: 688 PPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKAL-LSAPPHPSPTSRSS 746
              P   + S     + S +   P      PP      P  +  + ++ PPH S     +
Sbjct: 12  QAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQT 71

Query: 747 QPSF--HPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAP 804
              F         P P    P S+        +  +   +     P         +    
Sbjct: 72  YGHFPSRAIKSEYPDPYTSSPESI--------MGYSYMDSYQTSSPASIPHLILELLKCE 123

Query: 805 PPPPSIGCKPINAPRPPPPPPP 826
           P  P +  K +   +       
Sbjct: 124 PDEPQVQAKIMAYLQQEQANRS 145

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 46.1 bits (109), Expect = 4e-05
 Identities = 26/154 (16%), Positives = 37/154 (24%), Gaps = 12/154 (7%)

Query: 552 TNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPP 611
             +  +   P    + S+  N   +    P         D+   P  TS      PP   
Sbjct: 6   AMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGS 65

Query: 612 PPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPP-------- 663
              +        R+  S  P P    P       G S M S  +  P   P         
Sbjct: 66  LQGYQTYGHFPSRAIKSEYPDPYTSSPESIM---GYSYMDSYQTSSPASIPHLILELLKC 122

Query: 664 -PPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSF 696
            P  P    K  + L    +  S           
Sbjct: 123 EPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLM 156

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 45.0 bits (106), Expect = 8e-05
 Identities = 23/148 (15%), Positives = 32/148 (21%), Gaps = 5/148 (3%)

Query: 708 SKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPP--P 765
                P             ++SK L        PT     P    P     PP       
Sbjct: 10  VIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGY 69

Query: 766 SSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPP 825
            + G   ++   +    P    P   +  S   S   + P         I       P  
Sbjct: 70  QTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIP---HLILELLKCEPDE 126

Query: 826 PLGPARSGAVLPPPPPAPKLPTAPSPPS 853
           P   A+  A L             S   
Sbjct: 127 PQVQAKIMAYLQQEQANRSKHEKLSTFG 154

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 21/149 (14%), Positives = 34/149 (22%), Gaps = 9/149 (6%)

Query: 494 EGNPPCFPPSPSSP---------QSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPP 544
           E         PS            S +   PL   + P +     P   S    + PP  
Sbjct: 5   EAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHG 64

Query: 545 PPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPP 604
                 +  +          P P +++   I            S      +  E  +  P
Sbjct: 65  SLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCEP 124

Query: 605 PPPPPPPPPAFSGKDSSAVRSTSSIVPPP 633
             P          +   A RS    +   
Sbjct: 125 DEPQVQAKIMAYLQQEQANRSKHEKLSTF 153

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 43.4 bits (102), Expect = 3e-04
 Identities = 29/162 (17%), Positives = 42/162 (25%), Gaps = 16/162 (9%)

Query: 579 PPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPP 638
              P     SS   +   +  S+G P      PP  +    S  V S  S+  PP     
Sbjct: 12  QAMPSDLTISSAIQNIHSA--SKGLPLNHAALPPTDYDR--SPFVTSPISMTMPPHGSLQ 67

Query: 639 PPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPP------- 691
               YG      PS +     P P    P  S  G S + S  +      P         
Sbjct: 68  GYQTYGH----FPSRAIKSEYPDPYTSSPE-SIMGYSYMDSYQTSSPASIPHLILELLKC 122

Query: 692 PPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALL 733
            P     ++ I+     +                   +   L
Sbjct: 123 EPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTL 164

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 43.1 bits (101), Expect = 4e-04
 Identities = 16/116 (13%), Positives = 22/116 (18%), Gaps = 3/116 (2%)

Query: 749 SFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPP 808
           S             P   ++      +  A    P      PP     S   P    P  
Sbjct: 1   SLKLEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRS---PFVTSPIS 57

Query: 809 SIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPPP 864
                  +             A       P   +P+     S        SP   P
Sbjct: 58  MTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIP 113

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 41.9 bits (98), Expect = 9e-04
 Identities = 15/149 (10%), Positives = 32/149 (21%), Gaps = 8/149 (5%)

Query: 734 SAPPHPSPTSRSSQPSFHPPPP---PPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPP 790
                PS  + SS            P      PP            ++ T  P       
Sbjct: 10  VIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGY 69

Query: 791 PLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPS 850
                  +    +  P P       ++P        +   ++ +    P    +L     
Sbjct: 70  QTYGHFPSRAIKSEYPDP-----YTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCEP 124

Query: 851 PPSRGVMPSPPPPPGVKSSSVPPPPLPSV 879
              +            +++      L + 
Sbjct: 125 DEPQVQAKIMAYLQQEQANRSKHEKLSTF 153

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 51.8 bits (123), Expect = 8e-07
 Identities = 15/105 (14%), Positives = 29/105 (27%), Gaps = 4/105 (3%)

Query: 668 SFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPN 727
           +F     +   +      PPPPPP   S         ++  +     P   P  P+ G +
Sbjct: 13  NFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSS 72

Query: 728 SS----KALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSL 768
                  +L +A    +  + ++                     L
Sbjct: 73  GGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVL 117

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 50.2 bits (119), Expect = 3e-06
 Identities = 17/134 (12%), Positives = 25/134 (18%), Gaps = 11/134 (8%)

Query: 700 SSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPP 759
            S   +    G       P PPP             P   SP +     +          
Sbjct: 11  DSNFMANLPNGYMTDLQRPQPPP-----------PPPSAASPGATPGSAAASAERASTAA 59

Query: 760 PPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPR 819
           P   P +     +       +   AV         + S  +          G        
Sbjct: 60  PVASPAAPSPGSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLV 119

Query: 820 PPPPPPPLGPARSG 833
              P         G
Sbjct: 120 IDEPHTDWAKYFKG 133

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 48.3 bits (114), Expect = 9e-06
 Identities = 19/131 (14%), Positives = 34/131 (25%), Gaps = 26/131 (19%)

Query: 587 FSSKDF-SPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGK 645
            S  +F + +P+        P PPPPPP+                  P   P        
Sbjct: 9   LSDSNFMANLPNGYMTDLQRPQPPPPPPS---------------AASPGATPGSA----- 48

Query: 646 GSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPS 705
                 +++       P   P + S   S      SS+ +         + +    +   
Sbjct: 49  -----AASAERASTAAPVASPAAPSPGSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGG 103

Query: 706 TTSKGPPPPPP 716
           +   G      
Sbjct: 104 SGGAGRGGAAA 114

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 48.3 bits (114), Expect = 1e-05
 Identities = 20/130 (15%), Positives = 30/130 (23%), Gaps = 14/130 (10%)

Query: 695 SFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPP 754
           +F         T  + P PPPPPP                  P  +P S ++        
Sbjct: 13  NFMANLPNGYMTDLQRPQPPPPPPSAA--------------SPGATPGSAAASAERASTA 58

Query: 755 PPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKP 814
            P   P  P P S G       L+   +           +        A     +     
Sbjct: 59  APVASPAAPSPGSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLL 118

Query: 815 INAPRPPPPP 824
           +         
Sbjct: 119 VIDEPHTDWA 128

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 46.0 bits (108), Expect = 5e-05
 Identities = 23/128 (17%), Positives = 38/128 (29%), Gaps = 6/128 (4%)

Query: 521 SPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPP 580
           S ++    +P         P PPPPPP  +S      +P         ++    ++ P  
Sbjct: 10  SDSNFMANLPNGYMTDLQRPQPPPPPPSAASPGA---TPGSAAASAERASTAAPVASPAA 66

Query: 581 PPPPPCFSSKDFSPMPS---ETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPP 637
           P P        FS + +   +T+                G       +   +V   P   
Sbjct: 67  PSPGSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTD 126

Query: 638 PPPSFYGK 645
               F GK
Sbjct: 127 WAKYFKGK 134

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 46.0 bits (108), Expect = 5e-05
 Identities = 20/125 (16%), Positives = 38/125 (30%), Gaps = 4/125 (3%)

Query: 548 LPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPP 607
             ++  N +++    P P P   +    +  P   P    +S + +   +  +    P P
Sbjct: 14  FMANLPNGYMTDLQRPQPPPPPPS----AASPGATPGSAAASAERASTAAPVASPAAPSP 69

Query: 608 PPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPP 667
                  F    S+AV+ T++               G G     +   +    P      
Sbjct: 70  GSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDWAK 129

Query: 668 SFSGK 672
            F GK
Sbjct: 130 YFKGK 134

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 45.2 bits (106), Expect = 7e-05
 Identities = 21/120 (17%), Positives = 32/120 (26%)

Query: 777 LAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVL 836
           +    +P  PPPPP      +T    A     +    P+ +P  P P    G     ++ 
Sbjct: 23  MTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSSLS 82

Query: 837 PPPPPAPKLPTAPSPPSRGVMPSPPPPPGVKSSSVPPPPLPSVGKGKVTSGPASHGRGRL 896
                      A      G         G  +  +     P     K   G   HG   +
Sbjct: 83  NAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDWAKYFKGKKIHGEIDI 142

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 44.5 bits (104), Expect = 2e-04
 Identities = 23/134 (17%), Positives = 38/134 (28%), Gaps = 13/134 (9%)

Query: 566 LPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRS 625
             ++  N +++    P PPP        P PS  S G  P              +S    
Sbjct: 14  FMANLPNGYMTDLQRPQPPP--------PPPSAASPGATPGSAAASAER-----ASTAAP 60

Query: 626 TSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGS 685
            +S   P P       F+   S+ +  T++               G G     +   +  
Sbjct: 61  VASPAAPSPGSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVI 120

Query: 686 PPPPPPPPPSFSGR 699
             P       F G+
Sbjct: 121 DEPHTDWAKYFKGK 134

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 42.9 bits (100), Expect = 5e-04
 Identities = 17/138 (12%), Positives = 29/138 (21%), Gaps = 19/138 (13%)

Query: 728 SSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPP 787
           S    ++  P+   T         PPP    P   P  +                     
Sbjct: 10  SDSNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSA-------------------AA 50

Query: 788 PPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPT 847
                  +   + P AP P  S G    ++            A + +             
Sbjct: 51  SAERASTAAPVASPAAPSPGSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRG 110

Query: 848 APSPPSRGVMPSPPPPPG 865
             +     V+  P     
Sbjct: 111 GAAARVLLVIDEPHTDWA 128

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 42.5 bits (99), Expect = 5e-04
 Identities = 25/137 (18%), Positives = 33/137 (24%), Gaps = 11/137 (8%)

Query: 482 LSSLHQQSLVLTEGNPPCFPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPP 541
           LS  +  + +          P P  P   A +P   P S+ ASA        S   P   
Sbjct: 9   LSDSNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAE-----RASTAAPVAS 63

Query: 542 PPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSR 601
           P  P P  S     F S         ++    F                    +      
Sbjct: 64  PAAPSPGSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVI--- 120

Query: 602 GPPPPPPPPPPPAFSGK 618
                P       F GK
Sbjct: 121 ---DEPHTDWAKYFKGK 134

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 42.5 bits (99), Expect = 6e-04
 Identities = 18/102 (17%), Positives = 24/102 (23%)

Query: 794 KSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPS 853
            +   ++P            P   P    P    G A + A           P APSP S
Sbjct: 12  SNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGS 71

Query: 854 RGVMPSPPPPPGVKSSSVPPPPLPSVGKGKVTSGPASHGRGR 895
            G              +          +    SG A  G   
Sbjct: 72  SGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAA 113

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 48.4 bits (115), Expect = 1e-05
 Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 8/100 (8%)

Query: 691 PPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSF 750
           P  P+  G   +  +T +    P  P PP   AA         +  P P    +   P+ 
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAP--------TGDPKPKKNKKPKNPTP 53

Query: 751 HPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPP 790
             P            +    + +       +   V PPP 
Sbjct: 54  PRPAGDNATVAAGHATLREHLRDIKAENTDANFYVCPPPT 93

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 46.9 bits (111), Expect = 3e-05
 Identities = 19/102 (18%), Positives = 29/102 (28%), Gaps = 13/102 (12%)

Query: 535 APPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSP 594
           A P SP  P       + N    +P PP      +       P P     P       +P
Sbjct: 3   AAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTG-----DPKPKKNKKPK------NP 51

Query: 595 MPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSS--IVPPPP 634
            P   +                 +D  A  + ++  + PPP 
Sbjct: 52  TPPRPAGDNATVAAGHATLREHLRDIKAENTDANFYVCPPPT 93

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 46.9 bits (111), Expect = 4e-05
 Identities = 21/119 (17%), Positives = 32/119 (26%), Gaps = 12/119 (10%)

Query: 498 PCFPPSPSSPQSIAPTP-PLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSF 556
           P  P SP +P   A T       ++PA  +        A P   P P     P +     
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPAL------GAAPTGDPKPKKNKKPKNPTPPR 55

Query: 557 LSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETS--RGPPPPPPPPPPP 613
            +          +T    +           F      P P+  +  +   P   P  P 
Sbjct: 56  PAGDNATVAAGHATLREHLRDIKAENTDANFYV---CPPPTGATVVQFEQPRRCPTRPE 111

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 46.9 bits (111), Expect = 4e-05
 Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 5/97 (5%)

Query: 661 PPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPP 720
           P  P  P     G+  + + +   +  P  P PP+     +  P       P  P PP P
Sbjct: 2   PAAPTSP-----GTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRP 56

Query: 721 PPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPP 757
                  ++             + ++  +F+  PPP 
Sbjct: 57  AGDNATVAAGHATLREHLRDIKAENTDANFYVCPPPT 93

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 43.4 bits (102), Expect = 4e-04
 Identities = 15/105 (14%), Positives = 27/105 (25%), Gaps = 12/105 (11%)

Query: 634 PPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPP 693
           P  P  P           +T +    P  P PP   +        + +    P     P 
Sbjct: 2   PAAPTSPG----TPGVAAATQAANGGPATPAPPALGA--------APTGDPKPKKNKKPK 49

Query: 694 PSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPH 738
                R +   +T + G            A   +++  +   P  
Sbjct: 50  NPTPPRPAGDNATVAAGHATLREHLRDIKAENTDANFYVCPPPTG 94

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 43.0 bits (101), Expect = 6e-04
 Identities = 14/96 (14%), Positives = 24/96 (25%), Gaps = 5/96 (5%)

Query: 633 PPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPP 692
           P  P  P +     ++   +     P PP     P  +G             +PP P   
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAP--TGDPKPKKNKKPKNPTPPRPAGD 59

Query: 693 PPSFSGRSSIVPSTTSKGPPPPPPPPP---PPPAAG 725
             + +   + +                   PPP   
Sbjct: 60  NATVAAGHATLREHLRDIKAENTDANFYVCPPPTGA 95

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 42.6 bits (100), Expect = 8e-04
 Identities = 19/102 (18%), Positives = 25/102 (24%), Gaps = 12/102 (11%)

Query: 713 PPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKIT 772
           P  P  P  P     +  A    P  P+P +  + P+  P P     P  P P       
Sbjct: 2   PAAPTSPGTPGVAAATQAANGG-PATPAPPALGAAPTGDPKPKKNKKPKNPTPPR----- 55

Query: 773 NKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKP 814
                 P    A         +     I           C P
Sbjct: 56  ------PAGDNATVAAGHATLREHLRDIKAENTDANFYVCPP 91

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 48.3 bits (115), Expect = 1e-05
 Identities = 21/167 (12%), Positives = 35/167 (20%), Gaps = 22/167 (13%)

Query: 603 PPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPS---FYGKGSSTMPSTSSIGPP 659
           P   P      ++        R+       P P     +      + +  +    +    
Sbjct: 285 PEDDPVLKTYDSY---GRLLRRAID-----PDPRQRFTTAEEMSAQLTGVLREVVAQDTG 336

Query: 660 PPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPP 719
            P P     FS       PS S+ G             G+      T ++       P  
Sbjct: 337 VPRPGLSTIFS-------PSRSTFGVDLLVAHTDVYLDGQVHAEKLTANEIVTALSVPLV 389

Query: 720 PPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPS 766
            P     +    +L A     P                        S
Sbjct: 390 DPTDVAAS----VLQATVLSQPVQTLDSLRAARHGALDADGVDFSES 432

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 46.8 bits (111), Expect = 4e-05
 Identities = 14/169 (8%), Positives = 28/169 (16%), Gaps = 31/169 (18%)

Query: 711 PPPPPPPPPPP-------------PAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPP 757
           P   P                   P     +++ + +          +       P    
Sbjct: 285 PEDDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVLREVVAQDTGVPRPGLST 344

Query: 758 PPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINA 817
              P      +      L +A T                 T+  +               
Sbjct: 345 IFSPSRSTFGVD-----LLVAHTDVYLDGQVHAEKL----TANEIVTALS---------V 386

Query: 818 PRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPPPGV 866
           P   P        ++  +  P      L  A                 +
Sbjct: 387 PLVDPTDVAASVLQATVLSQPVQTLDSLRAARHGALDADGVDFSESVEL 435

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 24/177 (13%), Positives = 30/177 (16%), Gaps = 25/177 (14%)

Query: 709 KGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSS---------QPSFHPPPPPPPP 759
            G      P   P     +S   LL     P P  R +                      
Sbjct: 277 NGRYVDGLPEDDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVLREVVAQDTG 336

Query: 760 PPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPR 819
            P P  S++         +P+                      A                
Sbjct: 337 VPRPGLSTI--------FSPSRSTFGVDLLVAHTDVYLDGQVHAEKLTA--------NEI 380

Query: 820 PPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPPPGVKSSSVPPPPL 876
                 PL      A           P       R          GV  S     PL
Sbjct: 381 VTALSVPLVDPTDVAASVLQATVLSQPVQTLDSLRAARHGALDADGVDFSESVELPL 437

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 46.8 bits (109), Expect = 3e-05
 Identities = 17/100 (17%), Positives = 25/100 (25%), Gaps = 3/100 (3%)

Query: 692 PPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFH 751
           P    +  ++   +       P  P         PN   +L       +           
Sbjct: 394 PNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPK---VTKEK 450

Query: 752 PPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPP 791
           P PP  P  P  P     K      +AP  +    PP   
Sbjct: 451 PTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRL 490

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 46.0 bits (107), Expect = 5e-05
 Identities = 21/107 (19%), Positives = 30/107 (28%), Gaps = 8/107 (7%)

Query: 762 PPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPP 821
           P    ++G  +    +  +  P VP       K    +I  +          P      P
Sbjct: 394 PNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKK--PNIWYSLNGKIRAVNVPKVTKEKP 451

Query: 822 -PPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPPPGVK 867
            PP  P  P       P       L  AP  P+    P+PP      
Sbjct: 452 TPPVKPTAP-----TKPTYETEKPLKPAPVAPNYEKEPTPPTRLEHH 493

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 45.7 bits (106), Expect = 8e-05
 Identities = 20/113 (17%), Positives = 27/113 (23%), Gaps = 21/113 (18%)

Query: 739 PSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCST 798
            + ++ +  P    P  P          ++    N           VP      P     
Sbjct: 401 GATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLN----GKIRAVNVPKVTKEKPT---- 452

Query: 799 SIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSP 851
                PP  P+   KP      P  P P        V P     P  PT    
Sbjct: 453 -----PPVKPTAPTKPTYETEKPLKPAP--------VAPNYEKEPTPPTRLEH 492

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 44.5 bits (103), Expect = 2e-04
 Identities = 14/96 (14%), Positives = 26/96 (27%), Gaps = 11/96 (11%)

Query: 670 SGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSS 729
           +   ++ +P +     P          +   S+     +   P      P PP       
Sbjct: 402 ATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPP------- 454

Query: 730 KALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPP 765
                 P  P+  +  ++    P P  P     P P
Sbjct: 455 ----VKPTAPTKPTYETEKPLKPAPVAPNYEKEPTP 486

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 46.5 bits (109), Expect = 4e-05
 Identities = 26/195 (13%), Positives = 43/195 (22%), Gaps = 18/195 (9%)

Query: 597 SETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSI 656
           +  +            P  +G   +      S V   P     P+  G G+    +    
Sbjct: 9   AAAAAAAAAATGTEAGPGTAGGSEN-----GSEVAAQPAGLSGPAEVGPGAVGERTPRKK 63

Query: 657 GPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPP 716
            PP   PP   +      S+ P       P    P     +       ++  K       
Sbjct: 64  EPPRASPPGGLAEPP--GSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAKVEYR 121

Query: 717 PPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQ 776
                 A                +   +             PPPPP  P      +   +
Sbjct: 122 EMDESLANLSEDEYYSEEERNAKAEKEK-----------KLPPPPPQAPPEEENESEPEE 170

Query: 777 LAPTSQPAVPPPPPP 791
            +     A     P 
Sbjct: 171 PSGVEGAAFQSRLPH 185

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 43.8 bits (102), Expect = 3e-04
 Identities = 28/172 (16%), Positives = 44/172 (25%), Gaps = 16/172 (9%)

Query: 534 SAPPPSPPPPPPPPLPSSTNNSFLSPPPP---PPPLPSSTNNNFISPPPPPPPPPCFSSK 590
           +A   +     P     S N S ++  P     P           +P    PP       
Sbjct: 14  AAAAATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTPRKKEPPRASPPGG 73

Query: 591 DFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSS----------IVPPPPPPPPPP 640
              P  S   +  P   P    P  +G   +     +S           +          
Sbjct: 74  LAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAKVEYREMDESLANLSED 133

Query: 641 SFYGKGSSTMPSTSSIGPPPPP---PPPPPSFSGKGSSSLPSTSSIGSPPPP 689
            +Y +      +      PPPP   PP   + S     S    ++  S  P 
Sbjct: 134 EYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSGVEGAAFQSRLPH 185

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 43.8 bits (102), Expect = 3e-04
 Identities = 27/157 (17%), Positives = 33/157 (21%), Gaps = 4/157 (2%)

Query: 583 PPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPP---- 638
                 +   +   SE        P     PA  G  +   R+     PP   PP     
Sbjct: 17  AATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTPRKKEPPRASPPGGLAE 76

Query: 639 PPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSG 698
           PP   G  +       S  P        P                               
Sbjct: 77  PPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAKVEYREMDESLANLSEDEYY 136

Query: 699 RSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSA 735
                 +   K    PPPPP  PP     S     S 
Sbjct: 137 SEEERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSG 173

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 43.0 bits (100), Expect = 6e-04
 Identities = 27/182 (14%), Positives = 41/182 (22%), Gaps = 11/182 (6%)

Query: 483 SSLHQQSLVLTEGNPPCFPPSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPP 542
           ++    +   TE  P     S +  +  A    L   +     +     P    PP   P
Sbjct: 11  AAAAAAAATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTPRKKEPPRASP 70

Query: 543 PPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRG 602
           P     P  +      P   P           I+  P                  E    
Sbjct: 71  PGGLAEPPGSAGPQAGPTVVPGSATPMETG--IAETPEGRRTSRRKRAKV-----EYREM 123

Query: 603 PPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSI----GP 658
                       +S ++ +A       +PPPPP  PP                       
Sbjct: 124 DESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSGVEGAAFQSRL 183

Query: 659 PP 660
           P 
Sbjct: 184 PH 185

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 32/197 (16%), Positives = 52/197 (26%), Gaps = 17/197 (8%)

Query: 644 GKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIV 703
           GK ++   + ++         P  +    G S   S             P   SG + + 
Sbjct: 4   GKKAAAAAAAAAAAATGTEAGPGTA----GGSENGSEV--------AAQPAGLSGPAEVG 51

Query: 704 PSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPP 763
           P   + G   P    PP  +     ++   SA P   PT      +         P    
Sbjct: 52  PG--AVGERTPRKKEPPRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRR 109

Query: 764 PPSSLGKITNKLQLAP--TSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPP 821
                       ++     +             + +      PPPPP    +  N   P 
Sbjct: 110 TSRRKRAKVEYREMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEPE 169

Query: 822 PPPPPLGPARSGAVLPP 838
            P    G A   + LP 
Sbjct: 170 EPSGVEGAAFQ-SRLPH 185

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} Length = 483

 Score = 46.2 bits (109), Expect = 5e-05
 Identities = 27/157 (17%), Positives = 41/157 (26%), Gaps = 2/157 (1%)

Query: 593 SPMPSETSRGPPPPPPPPPPPA--FSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTM 650
            P       GP    PP           +      +S      PPP        K  + +
Sbjct: 304 PPRAVGHGAGPSGLAPPALQNDRQSGVDEGRTSGWSSMDRRRAPPPIASVGTLAKQKAPV 363

Query: 651 PSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKG 710
            + +S    P            GSS  P+ SS     P     PS +  +   P    + 
Sbjct: 364 GNDASFSKEPVISASNFLGRSSGSSRRPAVSSSRDVMPIDTSEPSRTRATDASPGAFRRT 423

Query: 711 PPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQ 747
             P    P        +SS    S   +     +  +
Sbjct: 424 SGPQKSSPVNSAEPKHSSSARHSSNVKNYESALKGIE 460

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} Length = 483

 Score = 43.5 bits (102), Expect = 3e-04
 Identities = 30/146 (20%), Positives = 40/146 (27%), Gaps = 1/146 (0%)

Query: 564 PPLPSSTNNNFISPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAV 623
           PP             PP       S  D       +S      PPP        K  + V
Sbjct: 304 PPRAVGHGAGPSGLAPPALQNDRQSGVDEGRTSGWSSMDRRRAPPPIASVGTLAKQKAPV 363

Query: 624 RSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSI 683
            + +S    P            GSS  P+ SS     P     PS   + + + P     
Sbjct: 364 GNDASFSKEPVISASNFLGRSSGSSRRPAVSSSRDVMPIDTSEPS-RTRATDASPGAFRR 422

Query: 684 GSPPPPPPPPPSFSGRSSIVPSTTSK 709
            S P    P  S   + S     +S 
Sbjct: 423 TSGPQKSSPVNSAEPKHSSSARHSSN 448

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 45.1 bits (106), Expect = 5e-05
 Identities = 31/135 (22%), Positives = 42/135 (31%), Gaps = 4/135 (2%)

Query: 743 SRSSQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPM 802
            R S  S H     P P  P   +    +     L P      PP P   P+     IP 
Sbjct: 15  PRGSHMSVHQVIELPAPAQPISVT----MVTPADLEPPQAVQPPPEPVVEPEPEPEPIPE 70

Query: 803 APPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPP 862
            P   P +  KP   P+P P P      +    + P    P  P   + P+R    +   
Sbjct: 71  PPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATA 130

Query: 863 PPGVKSSSVPPPPLP 877
                 +SV   P  
Sbjct: 131 ATSKPVTSVASGPRA 145

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 44.7 bits (105), Expect = 7e-05
 Identities = 25/126 (19%), Positives = 34/126 (26%)

Query: 711 PPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGK 770
           P    PP    P   P         P    P           P P P P P        K
Sbjct: 42  PADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPK 101

Query: 771 ITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPA 830
              K   +  + P     P  L  S +T+    P    + G + ++  +P  P       
Sbjct: 102 RDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQYPARAQALR 161

Query: 831 RSGAVL 836
             G V 
Sbjct: 162 IEGQVK 167

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 42.0 bits (98), Expect = 4e-04
 Identities = 30/151 (19%), Positives = 35/151 (23%), Gaps = 11/151 (7%)

Query: 516 LPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFI 575
           L P  S  S   VI LP  A P S     P  L           P   P           
Sbjct: 13  LVPRGSHMSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPE---------- 62

Query: 576 SPPPPPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPP 635
            P P P P P   +      P    +  P P                 R  S      P 
Sbjct: 63  -PEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPA 121

Query: 636 PPPPPSFYGKGSSTMPSTSSIGPPPPPPPPP 666
                +     S  + S +S         P 
Sbjct: 122 RLTSSTATAATSKPVTSVASGPRALSRNQPQ 152

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 42.0 bits (98), Expect = 4e-04
 Identities = 30/169 (17%), Positives = 39/169 (23%), Gaps = 21/169 (12%)

Query: 696 FSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPP 755
                 +   +          P P  P +    + A L  P    P           P P
Sbjct: 8   HHSSGLVPRGSHMSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEP 67

Query: 756 PPPPPPPPPPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPI 815
            P PP   P                 +P   P P P P       P     P        
Sbjct: 68  IPEPPKEAPV-------------VIEKPKPKPKPKPKPVKKVQEQPKRDVKPV------- 107

Query: 816 NAPRPPPPPPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPPP 864
              RP  P     PAR  +       +  + +  S P       P  P 
Sbjct: 108 -ESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQYPA 155

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 41.2 bits (96), Expect = 8e-04
 Identities = 26/124 (20%), Positives = 40/124 (32%), Gaps = 2/124 (1%)

Query: 782 QPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPPPPPLGPARSGAVLPPPPP 841
              +  P P  P S +   P    PP ++   P     P P P P+         P    
Sbjct: 23  HQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPP--KEAPVVIE 80

Query: 842 APKLPTAPSPPSRGVMPSPPPPPGVKSSSVPPPPLPSVGKGKVTSGPASHGRGRLNSGVS 901
            PK    P P     +   P        S P  P  +    ++TS  A+    +  + V+
Sbjct: 81  KPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVA 140

Query: 902 HAPK 905
             P+
Sbjct: 141 SGPR 144

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 45.7 bits (108), Expect = 6e-05
 Identities = 19/106 (17%), Positives = 26/106 (24%)

Query: 669 FSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNS 728
           F  K +       +           PS             +         PP   A P  
Sbjct: 339 FDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQ 398

Query: 729 SKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSLGKITNK 774
                  PP   P        + PPP   PP   PP +    + N+
Sbjct: 399 GYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPPQGVDNQ 444

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 42.7 bits (100), Expect = 4e-04
 Identities = 22/94 (23%), Positives = 31/94 (32%), Gaps = 7/94 (7%)

Query: 686 PPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRS 745
           P                 P+   +  P P PP PP    GP+  + L++A    +   + 
Sbjct: 5   PTQTFYGRRWR-------PAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQ 57

Query: 746 SQPSFHPPPPPPPPPPPPPPSSLGKITNKLQLAP 779
            Q      P   PPP P       K T K +  P
Sbjct: 58  KQKRAQKKPKKTPPPKPKKTQKPKKPTQKKKSKP 91

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} Length = 512

 Score = 43.1 bits (101), Expect = 4e-04
 Identities = 27/233 (11%), Positives = 46/233 (19%), Gaps = 23/233 (9%)

Query: 644 GKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIV 703
           G+G++   S++    P   P        K +S +     I    P       + G  S  
Sbjct: 120 GQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGYHPTSVTVTWYMGTQSQP 179

Query: 704 PSTTSKGPPPPPPPPPPPPAAGPNSSKALLSAPPHPSPTSRSSQPSFHPPPPPPPPPPPP 763
             T         P      +    SS+             +      H            
Sbjct: 180 QRTF--------PEIQRRDSYYMTSSQLSTPLQQWRQGEYKCVVQ--HTASKSKKEIFRW 229

Query: 764 PPSSLGKITNKLQLAPTSQPAVPPPPPPLPKSCSTSIPMAPPPPPSIGCKPINAPRPPPP 823
           P S            P +Q +  P   P  +        AP    + G       +    
Sbjct: 230 PES------------PKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEK 277

Query: 824 PPPLGPARSGAVLPPPPPAPKLPTAPSPPSRGVMPSPPPPPGVKSSSVPPPPL 876
                        P       +     P  + +                    
Sbjct: 278 EEQEERETKTPECPSHTQPLGVYLLT-PAVQDLWLRDKATFTCFVVGSDLKDA 329

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} Length = 512

 Score = 42.7 bits (100), Expect = 5e-04
 Identities = 31/302 (10%), Positives = 53/302 (17%), Gaps = 43/302 (14%)

Query: 502 PSPSSPQSIAPTPPLPPHSSPASASGVIPLPMSAPPPSPPPPPPPPLPSSTNNSFLSPPP 561
              S+P       P+         +  + L        P          + +    + P 
Sbjct: 126 HVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGYHPTSVTVTWYMGTQSQPQRTFPE 185

Query: 562 PPPPLPSSTNNNFISPPPPPPPPP---CFSSKDFSPMPSETSRGPPPP---PPPPPPPAF 615
                     ++ +S P          C      S    E  R P  P       P    
Sbjct: 186 IQRRDSYYMTSSQLSTPLQQWRQGEYKCVVQHTASKSKKEIFRWPESPKAQASSVPTAQP 245

Query: 616 SGKDSSAVRSTSSIVPPP--PPPPPPPSFYGKGSSTMPSTSSIGPPPPPPPP-----PPS 668
             + S A  +T+                   K       T +   P    P       P+
Sbjct: 246 QAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPA 305

Query: 669 FSGKGSSSLPSTSSIGSPPPPPPPPPSFSGRSSIVPSTTSKGPPPPPPPPPPPPAAGPNS 728
                     + +                       +    G  P             N 
Sbjct: 306 VQDLWLRDKATFTCFVVGSDLKD----------AHLTWEVAGKVPTGGVEEGLLERHSNG 355

Query: 729 SKALLSA--------------------PPHPSPTSRSSQPSFHPPPPPPPPPPPPPPSSL 768
           S++  S                     P  P     + +      P              
Sbjct: 356 SQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPPQRLMALREPAAQAPVKLSLNLLASSDPP 415

Query: 769 GK 770
             
Sbjct: 416 EA 417

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 41.8 bits (97), Expect = 5e-04
 Identities = 14/134 (10%), Positives = 18/134 (13%), Gaps = 5/134 (3%)

Query: 536 PPPSPPPPPPPPLPSSTNNSFLSPPPPPPPLPSSTNNNFISPPPPPPPPPCFSSKDFSPM 595
               P P        S       P    P               P               
Sbjct: 2   SKKRPKPGGGWNTGGSRY-----PGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQ 56

Query: 596 PSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPPPSFYGKGSSTMPSTSS 655
           P     G P       P    G          +    P       +      + +     
Sbjct: 57  PHGGGWGQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGLGG 116

Query: 656 IGPPPPPPPPPPSF 669
                    P   F
Sbjct: 117 YMLGSAMSRPLIHF 130

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Length = 536

 Score = 42.7 bits (100), Expect = 6e-04
 Identities = 24/143 (16%), Positives = 33/143 (23%), Gaps = 7/143 (4%)

Query: 580 PPPPPPCFSSKDFSPMPSETSRGPPPPPPPPPPPAFSGKDSSAVRSTSSIVPPPPPPPPP 639
           P       SS       +  +RG P  P      A    +  A +  ++        P  
Sbjct: 22  PAKTKKGLSS---ILDAARWNRGEPQVPDFRHLKA----EVDAEKPGATDRKGGVGMPSR 74

Query: 640 PSFYGKGSSTMPSTSSIGPPPPPPPPPPSFSGKGSSSLPSTSSIGSPPPPPPPPPSFSGR 699
               G      P  S        P   P           S     S     PP  +  G 
Sbjct: 75  DRNIGAPGQDTPGVSLHPLSLDSPDREPGADAPLELGDSSPQGPMSLESLAPPESTDEGA 134

Query: 700 SSIVPSTTSKGPPPPPPPPPPPP 722
            +  P    +G P        P 
Sbjct: 135 ETESPEPGDEGEPGRSGLELEPE 157

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1052
d1d5ra1	141	b.7.1.1 (A:188-351) Pten tumor suppressor (Phoshph	1e-31
d1v9da_	332	a.207.1.1 (A:) Diaphanous protein homolog 1, dia1	1e-25
d1ux5a_	411	a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces	2e-25
d1d5ra2	174	c.45.1.1 (A:14-187) Phoshphoinositide phosphatase	2e-14

>d1d5ra1 b.7.1.1 (A:188-351) Pten tumor suppressor (Phoshphoinositide phosphatase), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Pten tumor suppressor (Phoshphoinositide phosphatase), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (298), Expect = 1e-31
 Identities = 30/147 (20%), Positives = 45/147 (30%), Gaps = 26/147 (17%)

Query: 202 ALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTLRHYRQAD 261
           AL    ++   IP F     C P   +               I+S S    T R      
Sbjct: 5   ALLFHKMMFETIPMFS-GGTCNPQFVVCQ---------LKVKIYS-SNSGPTRRED---K 50

Query: 262 CDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMFNTAFIRSN----------ILML 311
               +      V GD+ +E  H      ++  MF    NT FI             +L L
Sbjct: 51  FMYFEFPQPLPVCGDIKVEFFHKQNKMLKKDKMFHFWVNTFFIPGPEEVDNDKEYLVLTL 110

Query: 312 NSENLDILWDSK--ERYPKGFRAEVLF 336
              +LD     K    +   F+ ++ F
Sbjct: 111 TKNDLDKANKDKANRYFSPNFKVKLYF 137

>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 332

class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Diaphanous protein homolog 1, dia1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  106 bits (267), Expect = 1e-25
 Identities = 18/75 (24%), Positives = 41/75 (54%)

Query: 975  KVQLVELRRAYNCEIMLTKIKIPLPDMMNAVLALDSSALDIDQVENLIKFCPTKEEMELL 1034
            ++++++ + A N  I L   ++P  ++ N +L ++ + L    ++NLIK  P  E++++L
Sbjct: 3    ELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKML 62

Query: 1035 KNYAGDKVMLGKCEQ 1049
                 +   L + EQ
Sbjct: 63   SELKEEYDDLAESEQ 77

>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 411

class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Bni1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  107 bits (269), Expect = 2e-25
 Identities = 30/168 (17%), Positives = 57/168 (33%), Gaps = 31/168 (18%)

Query: 904  PKKASLKPLHWVKVTRAMQGSLWADSQKQENHSR-APEIDISELESLFSAASDGSGTNKT 962
            P K  LK LHW K+      S+W   + ++       +  +++LE  F+A    S  +K 
Sbjct: 5    PHK-KLKQLHWEKL-DCTDNSIWGTGKAEKFADDLYEKGVLADLEKAFAAREIKSLASKR 62

Query: 963  GVRRGSNINKPEKVQLVELRRAYNCEIMLTKI-KIPLPDMMNAVLALDSSALDIDQVENL 1021
                       +K+  +    +    I L     + + D++  +L  D   L    V   
Sbjct: 63   K-------EDLQKITFLSRDISQQFGINLHMYSSLSVADLVKKILNCDRDFLQTPSVVEF 115

Query: 1022 I--------------KFCPTKEEMELLKNYA------GDKVMLGKCEQ 1049
            +               + P   + E ++N         D   L + +Q
Sbjct: 116  LSKSEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEKDPNDLQRADQ 163

>d1d5ra2 c.45.1.1 (A:14-187) Phoshphoinositide phosphatase Pten (Pten tumor suppressor), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Phoshphoinositide phosphatase Pten (Pten tumor suppressor), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.4 bits (172), Expect = 2e-14
 Identities = 33/187 (17%), Positives = 66/187 (35%), Gaps = 23/187 (12%)

Query: 6   RFFYKRPPDGLLEFI-ERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFN 64
           R + +   D  L +I   +      F  E +    Y+  + +++  L +    + +  +N
Sbjct: 1   RRYQEDGFDLDLTYIYPNIIAM--GFPAERLEGV-YRNNIDDVVRFL-DSKHKNHYKIYN 56

Query: 65  FREGEKQSEFAEILCEYDVTVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVIL 124
                          +++  V  YP +    P   + LI+ F    + WL   D  +V  
Sbjct: 57  LCAERHYDT-----AKFNCRVAQYPFEDHNPP--QLELIKPFCEDLDQWLS-EDDNHVAA 108

Query: 125 LHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVH--REAPKGFLQLLSPLNPFPSQLR 182
           +H  + G      ++ + L+ R      +  L+     R   K  +         PSQ R
Sbjct: 109 IHC-KAGKGRTGVMICAYLLHRGKFLKAQEALDFYGEVRTRDKKGVT-------IPSQRR 160

Query: 183 YLQYVAR 189
           Y+ Y + 
Sbjct: 161 YVYYYSY 167

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1052
d1d5ra2	174	Phoshphoinositide phosphatase Pten (Pten tumor sup	100.0
d1d5ra1	141	Pten tumor suppressor (Phoshphoinositide phosphata	99.96
d1fpza_	176	Kinase associated phosphatase (kap) {Human (Homo s	99.88
d1i9sa_	194	mRNA capping enzyme, triphosphatase domain {Mouse	99.85
d1ohea2	182	Proline directed phosphatase CDC14b2 {Human (Homo	99.81
d1ux5a_	411	Bni1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.79
d1rxda_	152	Protein tyrosine phosphatase type IVa {Human (Homo	99.73
d1v9da_	332	Diaphanous protein homolog 1, dia1 {Mouse (Mus mus	99.54
d1mkpa_	144	Mapk phosphatase {Human (Homo sapiens), pyst1 (mkp	99.17
d1vhra_	178	VH1-related dual-specificity phosphatase, VHR {Hum	99.0
d1m3ga_	145	Mapk phosphatase {Human (Homo sapiens), pac-1 [Tax	98.69
d1xria_	151	Putative phosphatase At1g05000 {Thale cress (Arabi	98.61
d2pt0a1	313	Myo-inositol hexaphosphate phosphohydrolase (phyta	98.57
d1g4us2	243	SptP tyrosine phosphatase, catalytic domain {Salmo	98.39
d1jlna_	297	Tyrosine phosphatase {Mouse (Mus musculus), ptp-sl	97.95
d1wcha_	308	Tyrosine-protein phosphatase, non-receptor type 13	97.89
d2shpa1	307	Tyrosine phosphatase {Human (Homo sapiens), shp-2	97.88
d1l8ka_	273	Tyrosine phosphatase {Human (Homo sapiens), T-cell	97.83
d1fpra_	284	Tyrosine phosphatase {Human (Homo sapiens), shp-1	97.74
d1lara1	317	RPTP Lar {Human (Homo sapiens) [TaxId: 9606]}	97.64
d2f71a1	297	Tyrosine phosphatase {Human (Homo sapiens), 1B [Ta	97.63
d1lara2	249	RPTP Lar {Human (Homo sapiens) [TaxId: 9606]}	97.59
d1rpma_	278	Tyrosine phosphatase {Human (Homo sapiens), mu [Ta	97.51
d1yfoa_	288	Tyrosine phosphatase {Mouse (Mus musculus) [TaxId:	97.46
d1lyva_	283	Protein-tyrosine phosphatase YopH, catalytic domai	97.42
d1p15a_	245	Protein-tyrosine phosphatase alpha {Mouse (Mus mus	97.33
d1ywfa1	272	Phosphotyrosine protein phosphatase PtpB {Mycobact	94.18
d1ohea1	157	Proline directed phosphatase CDC14b2 {Human (Homo	93.28

>d1d5ra2 c.45.1.1 (A:14-187) Phoshphoinositide phosphatase Pten (Pten tumor suppressor), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Phoshphoinositide phosphatase Pten (Pten tumor suppressor), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-37  Score=279.66  Aligned_cols=171  Identities=18%  Similarity=0.309  Sum_probs=151.7

Q ss_pred             HHHCCCCCCCCEEEEECCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHCCCCCE
Q ss_conf             12003799996245508379970678899978300023599999998430999969999313797452344531014837
Q 001565            5 SRFFYKRPPDGLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVT   84 (1052)
Q Consensus         5 r~~~~rk~~lDLtyIT~RIivm~~~fPae~~~E~~yRN~i~dV~~~L~~~h~~~~y~V~NLs~~~~~~~~~~~~s~f~~~   84 (1052)
                      |||.=...+|||+|||+|||||  +||+++. |..|||++.+|+.+|+++|.+ +|+||||++++.+     +.+.|+.+
T Consensus         1 ~~~~~~~~~lDlt~It~riiv~--~~P~~~~-e~~~~~~i~~v~~~l~~~~~~-~~~v~nl~~~~~y-----~~~~~~~~   71 (174)
T d1d5ra2           1 RRYQEDGFDLDLTYIYPNIIAM--GFPAERL-EGVYRNNIDDVVRFLDSKHKN-HYKIYNLCAERHY-----DTAKFNCR   71 (174)
T ss_dssp             CCCCBTTTTBSEEEEETTEEEE--CCCBSSC-CTTCCCBHHHHHHHHHHHSSS-CEEEEEEESSCCC-----CTTSCSSC
T ss_pred             CCCCCCCCCCCEEEEECCEEEE--ECCCCCC-HHHHCCCHHHHHHHHHHCCCC-CEEEEECCCCCCC-----CHHHCCCE
T ss_conf             9754478256614995899999--2899871-776538999999999750577-3789863567779-----85883974


Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
Q ss_conf             86377899999997289999999999999950998539999935799543789999999980388628899999998368
Q 001565           85 VLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAP  164 (1052)
Q Consensus        85 V~d~p~~d~g~P~p~L~~L~~~c~~i~~WL~~d~~~NVvvVHCk~Gkgrt~g~miaayLiy~~~~~~~~~AL~~~~k~~~  164 (1052)
                      |.+++|.|+++|  +++.|+.||+.+++|+..+.+ |+|+|||++|+||+ |+++||||+|++.+.++++|+++|..++.
T Consensus        72 ~~~~~~~d~~~P--s~~~i~~~~~~~~~~~~~~~~-~~v~VHC~~G~gRS-g~~~~ayL~~~~~~~~~~~al~~~~~~R~  147 (174)
T d1d5ra2          72 VAQYPFEDHNPP--QLELIKPFCEDLDQWLSEDDN-HVAAIHCKAGKGRT-GVMICAYLLHRGKFLKAQEALDFYGEVRT  147 (174)
T ss_dssp             EEEEEECTTSCC--CHHHHHHHHHHHHHHHTTTSC-SEEEEECSSSSHHH-HHHHHHHHHHHTSCSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCCC--CHHHHHHHHHHHHHHHCCCCC-CEEEEEECCCCCHH-HHHHHHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf             999378899996--999999999999987503899-87999959991351-99999999997178999999999999857


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             33013488999883588999999994079
Q 001565          165 KGFLQLLSPLNPFPSQLRYLQYVARRNIT  193 (1052)
Q Consensus       165 ~~~~q~~s~~n~~PSQ~RYv~Yf~~l~~~  193 (1052)
                      .+- .++    .+|||+|||+||++++++
T Consensus       148 ~~~-~~v----~~psQ~ryl~yf~~~L~~  171 (174)
T d1d5ra2         148 RDK-KGV----TIPSQRRYVYYYSYLLKN  171 (174)
T ss_dssp             SSS-CSS----CSHHHHHHHHHHHHHHHH
T ss_pred             CCC-CCC----CCHHHHHHHHHHHHHHHH
T ss_conf             899-987----899999999999999986

>d1d5ra1 b.7.1.1 (A:188-351) Pten tumor suppressor (Phoshphoinositide phosphatase), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Pten tumor suppressor (Phoshphoinositide phosphatase), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1e-28  Score=217.49  Aligned_cols=125  Identities=22%  Similarity=0.332  Sum_probs=104.2

Q ss_pred             CCEEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCEECCCCCCEEEEEECCCCCCCEEEE
Q ss_conf             72158779974047658899623199960168656789973079964523443111214577489991112001985999
Q 001565          201 RALSLDCVILRAIPNFDAQNGCRPIIRIFGRNFRSKGGLSTQMIFSMSKKRKTLRHYRQADCDVIKIDIQCLVQGDVVLE  280 (1052)
Q Consensus       201 ~~l~L~~IiL~~iP~f~~~~GcrP~l~Iy~~~~~~~~~~~~~~i~st~~~~~~~r~y~~~d~~~i~i~i~~~V~GDV~I~  280 (1052)
                      .+|+|++|+|++||+|+ +||||||++||+++         +++|++.....+  .  ...+..+.|+.++.|+|||+|+
T Consensus         4 ~~L~L~~I~l~~vP~f~-~ggCrP~~~I~~~~---------~~v~ts~~~~~~--~--~~~~~~i~l~~~~~v~GDV~v~   69 (141)
T d1d5ra1           4 VALLFHKMMFETIPMFS-GGTCNPQFVVCQLK---------VKIYSSNSGPTR--R--EDKFMYFEFPQPLPVCGDIKVE   69 (141)
T ss_dssp             CEEEEEEEEESSCCCSB-TTBCCEEEEEEETT---------EEEEECCSSCSE--E--ETTEEEEEEEEEEEEESEEEEE
T ss_pred             EEEEEEEEEEECCCCCC-CCEEEEEEEEECCC---------EEEEECCCEEEE--C--CCCEEEEEECCCCEEECCEEEE
T ss_conf             86999899997887347-99017999999187---------078764747676--1--4627999918999887889999


Q ss_pred             EEECCCCCCCCEEEEEEEEECCCCCCC----------EEEEECCCCCCCCCCC--CCCCCCCEEEEEEECC
Q ss_conf             993789998520299999304310398----------5999347887311235--8889995799998027
Q 001565          281 CVHLDLDPEREVMMFRVMFNTAFIRSN----------ILMLNSENLDILWDSK--ERYPKGFRAEVLFGDV  339 (1052)
Q Consensus       281 ~~h~~~~~~~~~~iFr~~FnT~FI~~n----------~L~l~k~eLD~~~~~k--~~fp~dF~Vel~F~~~  339 (1052)
                      |||++..+.++++||||||||+||++|          +|+|+|+|||.+|+++  ++|++||+|||+|++.
T Consensus        70 ~yh~~~~~~~~~~mF~~~FnT~FI~~~~~~~~~~~~~~L~l~k~eLD~a~kDk~~k~F~~~F~Vel~F~~~  140 (141)
T d1d5ra1          70 FFHKQNKMLKKDKMFHFWVNTFFIPGPEEVDNDKEYLVLTLTKNDLDKANKDKANRYFSPNFKVKLYFTKT  140 (141)
T ss_dssp             EEECCTTCSSCEEEEEEEEEGGGCC--------CCSEEEEEEGGGSTTGGGCTTCSSSCTTCEEEEEEEEC
T ss_pred             EEECCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEC
T ss_conf             99899986675279999998532017632456775389998050364312065457779984999999941

>d1fpza_ c.45.1.1 (A:) Kinase associated phosphatase (kap) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Kinase associated phosphatase (kap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=4.7e-22  Score=170.47  Aligned_cols=161  Identities=11%  Similarity=0.066  Sum_probs=131.8

Q ss_pred             CCCEEEEECCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCC----C-CHHHHHHCCCCCEEEE
Q ss_conf             9962455083799706788999783000235999999984309999699993137974----5-2344531014837863
Q 001565           13 PDGLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEK----Q-SEFAEILCEYDVTVLD   87 (1052)
Q Consensus        13 ~lDLtyIT~RIivm~~~fPae~~~E~~yRN~i~dV~~~L~~~h~~~~y~V~NLs~~~~----~-~~~~~~~s~f~~~V~d   87 (1052)
                      +++++|++.+|.++  ++|+.+. ++.|||..+|+..+.+..+    -.|+||++++.    . ..+...+..++.++.+
T Consensus         9 ~~~~~~~~~~lgl~--~~Pg~~~-~~~~r~~~~dl~~L~~~gi----~~Vv~L~~~~E~~~~~~~~~~~~~~~~gi~~~~   81 (176)
T d1fpza_           9 SLSRVNCSQFLGLC--ALPGCKF-KDVRRNVQKDTEELKSCGI----QDIFVFCTRGELSKYRVPNLLDLYQQCGIITHH   81 (176)
T ss_dssp             ECGGGTCCCEEEEE--SCTTCEE-TTEECCHHHHHHHHHHHTC----CEEEECCCHHHHHHTTCTTHHHHHHHTTCEEEE
T ss_pred             CCCCCCCCCCEEEE--CCCCCCC-CCCCCCHHHHHHHHHHCCC----CEEEEECCHHHHHHCCCCCHHHHHHHCCCEEEE
T ss_conf             78766776604786--4899887-6430377999999982899----999990886663331787579999976997996


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCC
Q ss_conf             77899999997289999999999999950998539999935799543789999999980388628899999998368330
Q 001565           88 YPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGF  167 (1052)
Q Consensus        88 ~p~~d~g~P~p~L~~L~~~c~~i~~WL~~d~~~NVvvVHCk~Gkgrt~g~miaayLiy~~~~~~~~~AL~~~~k~~~~~~  167 (1052)
                      +||.|++.|  .++.+..+|+.+++|+..+..   |+|||++|.||| |+++||||++.+...+.++|++++.+++..+ 
T Consensus        82 ~p~~D~~~p--~~~~~~~~~~~i~~~l~~~~~---V~VHC~~G~gRt-g~v~~~~Li~~~~~~~~~~Ai~~vr~~R~~~-  154 (176)
T d1fpza_          82 HPIADGGTP--DIASCCEIMEELTTCLKNYRK---TLIHSYGGLGRS-CLVAACLLLYLSDTISPEQAIDSLRDLRGSG-  154 (176)
T ss_dssp             CCCCTTCCC--CHHHHHHHHHHHHHHHHTTCC---EEEECSSSSSHH-HHHHHHHHHHHCSSCCHHHHHHHHHHHHCTT-
T ss_pred             CCCCCCCCH--HHHHHHHHHHHHHHHHHCCCE---EEEEECCCCCCH-HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC-
T ss_conf             896577720--569999999999999976990---899946787860-8999999999743899999999999858999-


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             13488999883588999999994079
Q 001565          168 LQLLSPLNPFPSQLRYLQYVARRNIT  193 (1052)
Q Consensus       168 ~q~~s~~n~~PSQ~RYv~Yf~~l~~~  193 (1052)
                        .+    .+++|.|||+||...+..
T Consensus       155 --~i----~t~~Q~~~l~~f~~~l~~  174 (176)
T d1fpza_         155 --AI----QTIKQYNYLHEFRDKLAA  174 (176)
T ss_dssp             --SS----CSHHHHHHHTTHHHHHHC
T ss_pred             --CC----CCHHHHHHHHHHHHHHHH
T ss_conf             --99----999999999999999995

>d1i9sa_ c.45.1.1 (A:) mRNA capping enzyme, triphosphatase domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: mRNA capping enzyme, triphosphatase domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=3.2e-20  Score=157.53  Aligned_cols=157  Identities=14%  Similarity=0.141  Sum_probs=125.7

Q ss_pred             EEEECCEEEEECCCCCCC-----CCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHCCCCCEEEECCCC
Q ss_conf             455083799706788999-----783000235999999984309999699993137974523445310148378637789
Q 001565           17 LEFIERVYVFDSCFSTEV-----VPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQ   91 (1052)
Q Consensus        17 tyIT~RIivm~~~fPae~-----~~E~~yRN~i~dV~~~L~~~h~~~~y~V~NLs~~~~~~~~~~~~s~f~~~V~d~p~~   91 (1052)
                      .-|++|+|+|  ..|..+     + +..+|+++.+|+++++++|.+ .++|+||+.+...|+. .++...+.+.+++++.
T Consensus        14 ~~I~~~fIa~--k~Pl~~~~~~~i-~~~~~~~~~~v~~~~~~~~~~-~~~vinlt~~~~~Y~~-~~~~~~gi~~~~~~~~   88 (194)
T d1i9sa_          14 QPVAGRFLPL--KTMLGPRYDSQV-AEENRFHPSMLSNYLKSLKVK-MSLLVDLTNTSRFYDR-NDIEKEGIKYIKLQCK   88 (194)
T ss_dssp             CCBTTTEEEE--CCCCCGGGTTTS-CGGGCCCHHHHHHHHHHTTCC-EEEEEECSSCSSSSCT-HHHHTTTCEEEECCCC
T ss_pred             CEECCCEEEE--CCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHCCC-CEEEEECCCCCCCCCH-HHHHHCCCEEEEECCC
T ss_conf             8707988883--588776745555-731168999999999861787-2499976688888498-9997638338985488


Q ss_pred             CCC-CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf             999-9997289999999999999950998539999935799543789999999980388628899999998368330134
Q 001565           92 YEG-CPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGFLQL  170 (1052)
Q Consensus        92 d~g-~P~p~L~~L~~~c~~i~~WL~~d~~~NVvvVHCk~Gkgrt~g~miaayLiy~~~~~~~~~AL~~~~k~~~~~~~q~  170 (1052)
                      +.+ +|  +++.+..||+.|+.|+..+.+ ++|+|||++|.||+ |+|+|||||+...++ .++|+++|.++++..+   
T Consensus        89 ~~~~~P--~~~~~~~f~~~v~~~~~~~~~-~~V~VHC~~G~~Rs-g~~i~ayL~~~~~~s-~~~Ai~~~~~~Rp~~i---  160 (194)
T d1i9sa_          89 GHGECP--TTENTETFIRLCERFNERSPP-ELIGVHCTHGFNRT-GFLICAFLVEKMDWS-IEAAVATFAQARPPGI---  160 (194)
T ss_dssp             CTTCCC--CHHHHHHHHHHHTTC-----C-CEEEEECSSSSHHH-HHHHHHHHHHHHCCC-HHHHHHHHHHHSTTCC---
T ss_pred             CCCCCC--CHHHHHHHHHHHHHHHHHCCC-CEEEEECCCCCCCC-HHHHHHHHHHHCCCC-HHHHHHHHHHHCCCCC---
T ss_conf             989897--868999999999999984899-83999878877733-899999999980998-9999999998788987---


Q ss_pred             CCCCCCCCHHHHHH-HHHHHHH
Q ss_conf             88999883588999-9999940
Q 001565          171 LSPLNPFPSQLRYL-QYVARRN  191 (1052)
Q Consensus       171 ~s~~n~~PSQ~RYv-~Yf~~l~  191 (1052)
                           ..+.++|+| +||+...
T Consensus       161 -----~~~~~~~~L~~~y~~~~  177 (194)
T d1i9sa_         161 -----YKGDYLKELFRRYGDIE  177 (194)
T ss_dssp             -----CCHHHHHHHHHHHSCGG
T ss_pred             -----CCHHHHHHHHHHHHHHC
T ss_conf             -----79899999999998642

>d1ohea2 c.45.1.1 (A:199-380) Proline directed phosphatase CDC14b2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Proline directed phosphatase CDC14b2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.1e-18  Score=144.75  Aligned_cols=152  Identities=16%  Similarity=0.177  Sum_probs=117.3

Q ss_pred             CCCEEEEE-CCEEEEECCCCCCCC--CCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHCCCCCEEEECC
Q ss_conf             99624550-837997067889997--830002359999999843099996999931379745234453101483786377
Q 001565           13 PDGLLEFI-ERVYVFDSCFSTEVV--PDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYP   89 (1052)
Q Consensus        13 ~lDLtyIT-~RIivm~~~fPae~~--~E~~yRN~i~dV~~~L~~~h~~~~y~V~NLs~~~~~~~~~~~~s~f~~~V~d~p   89 (1052)
                      -.|++||| .++|||  ++|....  ....+++..+++..+|+.++-   -.|+||+++.|..   ..+...+.++.+++
T Consensus        15 ngD~~wI~P~~~ia~--s~P~~~~~~~~~~~~~~~~~~l~~l~~~gi---~~Ii~l~~~~~~~---~~~~~~gi~~~~~p   86 (182)
T d1ohea2          15 NGDLNWIIPDRFIAF--CGPHSRARLESGYHQHSPETYIQYFKNHNV---TTIIRLNKRMYDA---KRFTDAGFDHHDLF   86 (182)
T ss_dssp             GTCEEEEETTTEEEE--CCCCSSCBCSTTCCBCCTHHHHHHHHHTTE---EEEEECSCCSSCT---HHHHTTTCEEEECC
T ss_pred             CCCCCEECCCCEEEE--CCCCCCCCCCCCCCCCCHHHHHHHHHHCCC---CEEEEECCCCCCC---CCCCCCCCEEEECC
T ss_conf             798615866876998--378766633335543599999999986499---8999906887686---41111895799617


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf             89999999728999999999999995099853999993579954378999999998038862889999999836833013
Q 001565           90 RQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGFLQ  169 (1052)
Q Consensus        90 ~~d~g~P~p~L~~L~~~c~~i~~WL~~d~~~NVvvVHCk~Gkgrt~g~miaayLiy~~~~~~~~~AL~~~~k~~~~~~~q  169 (1052)
                      +.|+++|  +++.+..|++.+.     +.+ +.|+|||++|.||| |+++||||++...++ .++|++++..+++..+  
T Consensus        87 ~~D~~~P--~~~~i~~~i~~~~-----~~~-~~V~VHC~~G~gRs-gt~~a~yL~~~~~~~-~~~Al~~vr~~Rp~~i--  154 (182)
T d1ohea2          87 FADGSTP--TDAIVKEFLDICE-----NAE-GAIAVHSKAGLGRT-GTLIACYIMKHYRMT-AAETIAWVRICRPGSV--  154 (182)
T ss_dssp             CCTTCCC--CHHHHHHHHHHHH-----SCS-SEEEEECSSSSHHH-HHHHHHHHHHHHCCC-HHHHHHHHHHHSTTCS--
T ss_pred             CCCCCCC--CHHHHHHHHHHHH-----CCC-CCEEEEECCCCCCH-HHHHHHHHHHHCCCC-HHHHHHHHHHHCCCCC--
T ss_conf             7789994--9999999999998-----089-94899858997643-999999999973999-9999999998788872--


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             4889998835889999999940
Q 001565          170 LLSPLNPFPSQLRYLQYVARRN  191 (1052)
Q Consensus       170 ~~s~~n~~PSQ~RYv~Yf~~l~  191 (1052)
                             +-.|.+||.+++..+
T Consensus       155 -------~~~qq~fl~~~~~~l  169 (182)
T d1ohea2         155 -------IGPQQQFLVMKQTNL  169 (182)
T ss_dssp             -------CTHHHHHHHHHHHHH
T ss_pred             -------CCHHHHHHHHHHHHH
T ss_conf             -------299899999999999

>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Bni1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=7.5e-23  Score=176.07  Aligned_cols=140  Identities=19%  Similarity=0.317  Sum_probs=113.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             97787677652200123479743343211245-67987786789998720479999887776568777898510132443
Q 001565          904 PKKASLKPLHWVKVTRAMQGSLWADSQKQENH-SRAPEIDISELESLFSAASDGSGTNKTGVRRGSNINKPEKVQLVELR  982 (1052)
Q Consensus       904 ~~k~klK~LhW~KI~~~i~gTiW~~l~~~~~~-~~~~eiD~~eLE~LFs~~~~~~~~~k~~~~~~~~~kK~~kvslLD~K  982 (1052)
                      +++++||+|||++|+ ..++|||+++...... .....+|+++||++|+++.......       ...++.+++++||.|
T Consensus         4 kP~~klK~l~W~ki~-~~~~tiW~~i~~~~~~~~~~~~~~~~~le~~F~~k~~~~~~~-------~~~~~~~~~~lLd~k   75 (411)
T d1ux5a_           4 RPHKKLKQLHWEKLD-CTDNSIWGTGKAEKFADDLYEKGVLADLEKAFAAREIKSLAS-------KRKEDLQKITFLSRD   75 (411)
T ss_dssp             CCSSCBCCCCCCCCS-SCCSSSCCSSHHHHHHHHHHHTTHHHHHHHHTBSSCCHHHHH-------HHHHTTTSBCCSCHH
T ss_pred             CCCCCCCCCCCEECC-CCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC-------CCCCCCCCCCCCCHH
T ss_conf             899999897761599-989882002044100367886630999999864477777766-------666666620017678


Q ss_pred             HHHHHHHHHHCC-CCCHHHHHHHHHHCCCCCCCHHHHHHHH--------------HHCCCHHHHHHHHHHC------CCC
Q ss_conf             211377876207-8896759999980398988999999999--------------7099989999997220------888
Q 001565          983 RAYNCEIMLTKI-KIPLPDMMNAVLALDSSALDIDQVENLI--------------KFCPTKEEMELLKNYA------GDK 1041 (1052)
Q Consensus       983 RaqNi~I~L~kl-kls~eeI~~aIl~lD~~~L~~e~Ie~Ll--------------k~lPT~EEi~~Lk~y~------gd~ 1041 (1052)
                      |+||++|+|++| +++.++|+++|+.||..+|+.+.+..++              +++||.||++.|++|+      ||.
T Consensus        76 r~qni~I~L~~~~~~s~~~i~~ai~~~d~~~l~~~~l~~ll~~~~~~~~~~~~l~~~lPt~eE~~~l~~~~~~~~~~~d~  155 (411)
T d1ux5a_          76 ISQQFGINLHMYSSLSVADLVKKILNCDRDFLQTPSVVEFLSKSEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEKDP  155 (411)
T ss_dssp             HHHHHHHHTGGGTTSCHHHHHHHHHTTTHHHHTCHHHHHHTTCHHHHCCCHHHHHHTGGGCCCCTTCCCGGGCCCCSSCS
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCH
T ss_conf             99999899987069999999999983685424878999998302101347999998179937899999998514454784


Q ss_pred             CCCCCCCCCC
Q ss_conf             8999789999
Q 001565         1042 VMLGKCEQVP 1051 (1052)
Q Consensus      1042 ~~Lg~aEqFl 1051 (1052)
                      +.|+.+||||
T Consensus       156 ~~L~~~Eqf~  165 (411)
T d1ux5a_         156 NDLQRADQIY  165 (411)
T ss_dssp             TTBCHHHHHH
T ss_pred             HHCCHHHHHH
T ss_conf             5438799999

>d1rxda_ c.45.1.1 (A:) Protein tyrosine phosphatase type IVa {Human (Homo sapiens), pr-1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Protein tyrosine phosphatase type IVa
species: Human (Homo sapiens), pr-1 [TaxId: 9606]

Probab=99.73  E-value=1e-16  Score=132.84  Aligned_cols=147  Identities=16%  Similarity=0.146  Sum_probs=114.1

Q ss_pred             CCCEEEEECCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHCCCCCEEEECCCCC
Q ss_conf             99624550837997067889997830002359999999843099996999931379745234453101483786377899
Q 001565           13 PDGLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQY   92 (1052)
Q Consensus        13 ~lDLtyIT~RIivm~~~fPae~~~E~~yRN~i~dV~~~L~~~h~~~~y~V~NLs~~~~~~~~~~~~s~f~~~V~d~p~~d   92 (1052)
                      +-|++|++.|.|++  ..|.+        +.+.+-..+|.++.   --.|+||+++.|...   .+...+.++.+++|.|
T Consensus         1 ~~~~~y~~~rfI~t--q~P~~--------~t~~~f~~~l~~~~---i~~Iv~l~e~~y~~~---~~~~~~i~~~~~~~~d   64 (152)
T d1rxda_           1 PVEVTYKNMRFLIT--HNPTN--------ATLNKFIEELKKYG---VTTIVRVCEATYDTT---LVEKEGIHVLDWPFDD   64 (152)
T ss_dssp             CEEEEETTEEEEEC--CCCCG--------GGHHHHHHHHHHTT---EEEEEECSCCCSCCH---HHHHTTCEEEECCC--
T ss_pred             CEEEEECCCEEEEE--CCCCC--------HHHHHHHHHHHHHC---CEEEEECCCCCCCCH---HEEECCEEEEEEECCC
T ss_conf             95686057238997--89970--------06999999999839---818830134668801---4015565899865789


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             99999728999999999999995099853999993579954378999999998038862889999999836833013488
Q 001565           93 EGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGFLQLLS  172 (1052)
Q Consensus        93 ~g~P~p~L~~L~~~c~~i~~WL~~d~~~NVvvVHCk~Gkgrt~g~miaayLiy~~~~~~~~~AL~~~~k~~~~~~~q~~s  172 (1052)
                      +..|  +++.+..++..++.|+..+.. +.|+|||.+|.||+ |+++||||++.+.  +.++|++++.++++..      
T Consensus        65 ~~~p--~~~~~~~~~~~~~~~~~~~~~-~~v~VHC~~G~gRs-g~~~a~~l~~~~~--~~~~av~~vr~~R~~~------  132 (152)
T d1rxda_          65 GAPP--SNQIVDDWLSLVKIKFREEPG-CCIAVHCVAGLGRA-PVLVALALIEGGM--KYEDAVQFIRQKRRGA------  132 (152)
T ss_dssp             CCCC--CHHHHHHHHHHHHHHHHHSTT-CEEEEECSSSSTTH-HHHHHHHHHHTTC--CHHHHHHHHHTTCTTC------
T ss_pred             CCCC--CHHHHHHHHHHHHHHHHHCCC-CCEEEEECCCCCCH-HHHHHHHHHHHCC--CHHHHHHHHHHHCCCC------
T ss_conf             9999--989999999999999984899-97899976775208-9999999999595--9999999999768988------


Q ss_pred             CCCCCCHHHHHHHHHHHH
Q ss_conf             999883588999999994
Q 001565          173 PLNPFPSQLRYLQYVARR  190 (1052)
Q Consensus       173 ~~n~~PSQ~RYv~Yf~~l  190 (1052)
                         ....|.+||++|...
T Consensus       133 ---i~~~Q~~fl~~y~~~  147 (152)
T d1rxda_         133 ---FNSKQLLYLEKYRPK  147 (152)
T ss_dssp             ---CCHHHHHHHHHCCCC
T ss_pred             ---CCHHHHHHHHHHHHH
T ss_conf             ---750999999999999

>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Diaphanous protein homolog 1, dia1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=1.1e-15  Score=125.50  Aligned_cols=78  Identities=23%  Similarity=0.442  Sum_probs=76.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             510132443211377876207889675999998039898899999999970999899999972208888999789999
Q 001565          974 EKVQLVELRRAYNCEIMLTKIKIPLPDMMNAVLALDSSALDIDQVENLIKFCPTKEEMELLKNYAGDKVMLGKCEQVP 1051 (1052)
Q Consensus       974 ~kvslLD~KRaqNi~I~L~klkls~eeI~~aIl~lD~~~L~~e~Ie~Llk~lPT~EEi~~Lk~y~gd~~~Lg~aEqFl 1051 (1052)
                      ++|+|||.||+||++|+|++|+++.++|+++|+.||..+|+.|.|+.|++++||+||+++|++|.|+.+.|+.+||||
T Consensus         2 k~i~vLd~kr~~ni~I~L~~~k~~~~~i~~ai~~~D~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~L~~~E~f~   79 (332)
T d1v9da_           2 KELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEYDDLAESEQFG   79 (332)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCTTTCCHHHHHHHHHHSCCHHHHHHHHTCGGGGGGSCHHHHHH
T ss_pred             CEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHCCHHHHHH
T ss_conf             536856678898899998007969999999999577122999999999885959999999987127954268599999

>d1mkpa_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pyst1 (mkp3) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Mapk phosphatase
species: Human (Homo sapiens), pyst1 (mkp3) [TaxId: 9606]

Probab=99.17  E-value=1.3e-09  Score=82.65  Aligned_cols=140  Identities=13%  Similarity=0.025  Sum_probs=94.7

Q ss_pred             EEEECCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHCCCCCEEEECCCCCCCCC
Q ss_conf             45508379970678899978300023599999998430999969999313797452344531014837863778999999
Q 001565           17 LEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGCP   96 (1052)
Q Consensus        17 tyIT~RIivm~~~fPae~~~E~~yRN~i~dV~~~L~~~h~~~~y~V~NLs~~~~~~~~~~~~s~f~~~V~d~p~~d~g~P   96 (1052)
                      ++|+++|++-  ++.+..        +    ..+|++. +  =-.|+|++.+....    .....+....++++.|.+..
T Consensus         5 ~eI~p~lylG--~~~~a~--------~----~~~l~~~-g--I~~Iin~~~~~~~~----~~~~~~~~y~~~~~~D~~~~   63 (144)
T d1mkpa_           5 VEILPFLYLG--CAKDST--------N----LDVLEEF-G--IKYILNVTPNLPNL----FENAGEFKYKQIPISDHWSQ   63 (144)
T ss_dssp             EEEETTEEEE--CTTSCC--------C----HHHHHHT-T--EEEEEECCSSCCCE----EEEETTEEEEECCCCCSTTC
T ss_pred             CEEECCEEEC--CHHHHC--------C----HHHHHHC-C--CCEEEECCCCCCCC----CCCCCCEEEEEEEEECCCCC
T ss_conf             7477988997--813754--------9----9999757-9--85999704667853----24788628999997147888


Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             97289999999999999950998539999935799543789999999980388628899999998368330134889998
Q 001565           97 LLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGFLQLLSPLNP  176 (1052)
Q Consensus        97 ~p~L~~L~~~c~~i~~WL~~d~~~NVvvVHCk~Gkgrt~g~miaayLiy~~~~~~~~~AL~~~~k~~~~~~~q~~s~~n~  176 (1052)
                      . -...+..+++.++..+..+..   |+|||++|.+|+ |++++||||+...+ +.++|++++.++++.-        +.
T Consensus        64 ~-i~~~~~~~~~~i~~~~~~~~~---VlVHC~~G~~RS-~~vv~aYLm~~~~~-~~~~A~~~v~~~Rp~i--------~p  129 (144)
T d1mkpa_          64 N-LSQFFPEAISFIDEARGKNCG---VLVHSLAGISRS-VTVTVAYLMQKLNL-SMNDAYDIVKMKKSNI--------SP  129 (144)
T ss_dssp             C-SGGGHHHHHHHHHHHHHTTCE---EEEECSSCSHHH-HHHHHHHHHHHHTC-CHHHHHHHHHHHCTTC--------CC
T ss_pred             C-HHHHHHHHHHHHHHHHHCCCE---EEEEECCCCCCH-HHHHHHHHHHHHCC-CHHHHHHHHHHHCCCC--------CC
T ss_conf             8-899999999988776622633---899955566606-99999999998598-9999999999989988--------99


Q ss_pred             CCHHHHHHHHHHHHH
Q ss_conf             835889999999940
Q 001565          177 FPSQLRYLQYVARRN  191 (1052)
Q Consensus       177 ~PSQ~RYv~Yf~~l~  191 (1052)
                      ..++++.|..|++.+
T Consensus       130 n~~f~~qL~~~e~~L  144 (144)
T d1mkpa_         130 NFNFMGQLLDFERTL  144 (144)
T ss_dssp             CSTTHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHC
T ss_conf             989999999999659

>d1vhra_ c.45.1.1 (A:) VH1-related dual-specificity phosphatase, VHR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: VH1-related dual-specificity phosphatase, VHR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.4e-08  Score=75.38  Aligned_cols=152  Identities=18%  Similarity=0.150  Sum_probs=95.1

Q ss_pred             CCCCCCEEEEECCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCHH---HHHHCCCCCEEE
Q ss_conf             79999624550837997067889997830002359999999843099996999931379745234---453101483786
Q 001565           10 KRPPDGLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEF---AEILCEYDVTVL   86 (1052)
Q Consensus        10 rk~~lDLtyIT~RIivm~~~fPae~~~E~~yRN~i~dV~~~L~~~h~~~~y~V~NLs~~~~~~~~---~~~~s~f~~~V~   86 (1052)
                      ..+..=.+.|+++|++-  ++++..        +    ..+|+++ +  ==.|+|++++......   ...+...+.+..
T Consensus        17 ~~p~~p~~~I~~~LylG--~~~~a~--------d----~~~L~~~-g--I~~Iin~~~~~~~~~~~~~~~~~~~~~i~y~   79 (178)
T d1vhra_          17 SLPSQPCNEVTPRIYVG--NASVAQ--------D----IPKLQKL-G--ITHVLNAAEGRSFMHVNTNANFYKDSGITYL   79 (178)
T ss_dssp             CCCSSSEEEEETTEEEE--CHHHHT--------C----HHHHHHH-T--CCEEEETTBSSSTTSBCCCHHHHTTTTCEEE
T ss_pred             CCCCCCCCEEECCEEEC--CHHHHC--------C----HHHHHHC-C--CEEEEECCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf             27989858860897897--833755--------9----9999986-9--9799976764444456666120025896899


Q ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf             37789999999728999999999999995099853999993579954378999999998038862889999999836833
Q 001565           87 DYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKG  166 (1052)
Q Consensus        87 d~p~~d~g~P~p~L~~L~~~c~~i~~WL~~d~~~NVvvVHCk~Gkgrt~g~miaayLiy~~~~~~~~~AL~~~~k~~~~~  166 (1052)
                      .+++.|.... .-...+...++.|+.++.++.  +-|+|||.+|.+|+ |++++||||+...++ .++|++++..+++-.
T Consensus        80 ~ipi~D~~~~-~i~~~~~~~~~fi~~~~~~~~--~~VLVHC~~G~sRS-~~vv~aYLm~~~~~s-~~~A~~~vr~~R~i~  154 (178)
T d1vhra_          80 GIKANDTQEF-NLSAYFERAADFIDQALAQKN--GRVLVHCREGYSRS-PTLVIAYLMMRQKMD-VKSALSIVRQNREIG  154 (178)
T ss_dssp             ECCCCCSTTC-CGGGGHHHHHHHHHHHHTSTT--CCEEEECSSSSSHH-HHHHHHHHHHHSCCC-HHHHHHHHHHHSCCC
T ss_pred             EEECCCCCCH-HHHHHHHHHHHHHHHHHHCCC--CEEEEECCCCCCCH-HHHHHHHHHHHCCCC-HHHHHHHHHHCCCCC
T ss_conf             9835888632-279999999998654430478--42999838777657-999999999821989-999999999679999


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             01348899988358899999999407
Q 001565          167 FLQLLSPLNPFPSQLRYLQYVARRNI  192 (1052)
Q Consensus       167 ~~q~~s~~n~~PSQ~RYv~Yf~~l~~  192 (1052)
                               ...+..+-|..|++.+.
T Consensus       155 ---------pn~~f~~qL~~~e~~L~  171 (178)
T d1vhra_         155 ---------PNDGFLAQLCQLNDRLA  171 (178)
T ss_dssp             ---------CCHHHHHHHHHHHHHHH
T ss_pred             ---------CCHHHHHHHHHHHHHHH
T ss_conf             ---------89899999999999999

>d1m3ga_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pac-1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Mapk phosphatase
species: Human (Homo sapiens), pac-1 [TaxId: 9606]

Probab=98.69  E-value=2e-08  Score=74.24  Aligned_cols=118  Identities=14%  Similarity=0.072  Sum_probs=79.2

Q ss_pred             EEEEECCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHCCCCCEEEECCCCCCCC
Q ss_conf             24550837997067889997830002359999999843099996999931379745234453101483786377899999
Q 001565           16 LLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQYEGC   95 (1052)
Q Consensus        16 LtyIT~RIivm~~~fPae~~~E~~yRN~i~dV~~~L~~~h~~~~y~V~NLs~~~~~~~~~~~~s~f~~~V~d~p~~d~g~   95 (1052)
                      =+.|+++|++-  ++.+           ..+ ..+|+++.=.   .|+|++++....      ..-.....++++.|.+.
T Consensus         4 p~eI~p~LylG--~~~~-----------a~~-~~~L~~~gI~---~Iin~~~~~~~~------~~~~~~y~~i~i~D~~~   60 (145)
T d1m3ga_           4 PVEILPYLFLG--SCSH-----------SSD-LQGLQACGIT---AVLNVSASCPNH------FEGLFRYKSIPVEDNQM   60 (145)
T ss_dssp             CEEETTTEEEC--CSTH-----------HHH-HHHHHHHTCS---EEEECSSSSSEE------ECSSSEEEECCCCCSTT
T ss_pred             CEEEECCEEEC--CHHH-----------HCC-HHHHHHCCCC---EEEEECCCCCCC------CCCCEEEEEEECCCCCH
T ss_conf             80898998892--8214-----------449-9999985995---999943788767------87752799984267842


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             9972899999999999999509985399999357995437899999999803886288999999983
Q 001565           96 PLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHRE  162 (1052)
Q Consensus        96 P~p~L~~L~~~c~~i~~WL~~d~~~NVvvVHCk~Gkgrt~g~miaayLiy~~~~~~~~~AL~~~~k~  162 (1052)
                      .. -...+..++..++..+..+.+   |+|||.+|.+|+ +++++||||+...++ .++|++++.++
T Consensus        61 ~~-i~~~~~~~~~~i~~~~~~~~~---VlVHC~~G~sRS-~~v~~aYLm~~~~~~-~~~A~~~v~~~  121 (145)
T d1m3ga_          61 VE-ISAWFQEAIGFIDWVKNSGGR---VLVHSQAGISRS-ATICLAYLMQSRRVR-LDEAFDFVKQR  121 (145)
T ss_dssp             CC-CTTSHHHHHHHHHHHHHTTCC---EEECCSSSSSHH-HHHHHHHHHHTTCCH-HHHHHHHHSCS
T ss_pred             HH-HHHHHHHHHHHHHHHHCCCCE---EEEECCCCCCCH-HHHHHHHHHHHHCCC-HHHHHHHHHHH
T ss_conf             56-899999999988876405746---999815555607-999999999986979-99999999998

>d1xria_ c.45.1.1 (A:) Putative phosphatase At1g05000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Putative phosphatase At1g05000
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.61  E-value=1.2e-07  Score=68.77  Aligned_cols=144  Identities=15%  Similarity=0.173  Sum_probs=84.8

Q ss_pred             CCCCEEEEECCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHCCCCCEEEECCCC
Q ss_conf             99962455083799706788999783000235999999984309999699993137974523445310148378637789
Q 001565           12 PPDGLLEFIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPRQ   91 (1052)
Q Consensus        12 ~~lDLtyIT~RIivm~~~fPae~~~E~~yRN~i~dV~~~L~~~h~~~~y~V~NLs~~~~~~~~~~~~s~f~~~V~d~p~~   91 (1052)
                      +++-...|+++|+-.  +.+++           .++ .+|++.-   ==.|+||+.+.......+.+...+.++.+.+..
T Consensus         4 pp~nF~~V~~~lyRs--~~~t~-----------~~~-~~L~~lg---IktIidLr~~~e~~~~~~~~~~~gi~~~~ip~~   66 (151)
T d1xria_           4 PPLNFSMVDNGIFRS--GFPDS-----------ANF-SFLQTLG---LRSIIYLCPEPYPESNLQFLKSNGIRLFQFGIE   66 (151)
T ss_dssp             CCTTCEEEETTEEEE--SCCCH-----------HHH-HHHHHHT---CSEEEECCSSCCCHHHHHHHHHHTCEEEECCCC
T ss_pred             CCCCCCEECCCCEEC--CCCCH-----------HHH-HHHHHCC---CCEEEECCCCCHHHCCCCHHHHCCCEEEECCCC
T ss_conf             971124335895665--99898-----------779-9999879---988997887401020200365569627615732


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf             99999972899999999999999509985399999357995437899999999803886288999999983683301348
Q 001565           92 YEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIVHREAPKGFLQLL  171 (1052)
Q Consensus        92 d~g~P~p~L~~L~~~c~~i~~WL~~d~~~NVvvVHCk~Gkgrt~g~miaayLiy~~~~~~~~~AL~~~~k~~~~~~~q~~  171 (1052)
                      +...+  ......+....+...+. +..+.=|+|||.+||.|| |+++||||.+.|. + .+++++.|.+.+...     
T Consensus        67 ~~~~~--~~~~~~~~~~~~~~~~~-~~~~~pvlvHC~~GkdRT-G~v~a~~l~~~g~-~-~~~i~~dy~~~~~~~-----  135 (151)
T d1xria_          67 GNKEP--FVNIPDHKIRMALKVLL-DEKNHPVLIHCKRGKHRT-GCLVGCLRKLQKW-C-LTSIFDEYQRFAAAK-----  135 (151)
T ss_dssp             CCCGG--GCCCCHHHHHHHHHHHH-CGGGCSEEEECSSSSSHH-HHHHHHHHHHTTB-C-HHHHHHHHHHHHGGG-----
T ss_pred             CCCCC--CCCCCHHHHHHHHHHHH-CCCCCCEEEECCCCCHHH-HHHHHHHHHHCCC-C-HHHHHHHHHHHCCCC-----
T ss_conf             24331--11053999999999996-378997787748984078-9999999999499-9-999999999865674-----


Q ss_pred             CCCCCCCHHHHHHHHH
Q ss_conf             8999883588999999
Q 001565          172 SPLNPFPSQLRYLQYV  187 (1052)
Q Consensus       172 s~~n~~PSQ~RYv~Yf  187 (1052)
                          ...-+.|||+-|
T Consensus       136 ----~~~~~~~fiE~f  147 (151)
T d1xria_         136 ----ARVSDQRFMEIF  147 (151)
T ss_dssp             ----CCHHHHHHHHTC
T ss_pred             ----CCHHHHHHHHHH
T ss_conf             ----458999999971

>d2pt0a1 c.45.1.4 (A:34-346) Myo-inositol hexaphosphate phosphohydrolase (phytase) PhyA {Selenomonas ruminantium [TaxId: 971]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Myo-inositol hexaphosphate phosphohydrolase (phytase) PhyA
domain: Myo-inositol hexaphosphate phosphohydrolase (phytase) PhyA
species: Selenomonas ruminantium [TaxId: 971]

Probab=98.57  E-value=5.2e-07  Score=64.25  Aligned_cols=71  Identities=13%  Similarity=0.097  Sum_probs=53.0

Q ss_pred             CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             837863778999999972899999999999999509985399999357995437899999999803886288999999
Q 001565           82 DVTVLDYPRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTLEIV  159 (1052)
Q Consensus        82 ~~~V~d~p~~d~g~P~p~L~~L~~~c~~i~~WL~~d~~~NVvvVHCk~Gkgrt~g~miaayLiy~~~~~~~~~AL~~~  159 (1052)
                      +.+-.+.||.||++|  ..+.+..|+..+.+   .... ..++|||++|+||| |+++|+|+|......+.++++..-
T Consensus       180 g~~Y~ripi~D~~~P--~~~~id~~i~~i~~---~~~~-~~ivvhc~~g~~rt-~~~~~~~~~~~~~~~~~~d~i~rq  250 (313)
T d2pt0a1         180 GMRYFRIAATDHVWP--TPENIDRFLAFYRT---LPQD-AWLHFHCEAGVGRT-TAFMVMTDMLKNPSVSLKDILYRQ  250 (313)
T ss_dssp             TCEEEEEEECTTSCC--CHHHHHHHHHHHHT---CCTT-CEEEEECSSSSHHH-HHHHHHHHHHHCTTSCHHHHHHHH
T ss_pred             CCEEEEECCCCCCCC--CHHHHHHHHHHHHH---CCCC-CCEEEECCCCCCHH-HHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf             966898157888898--97999999999985---7999-97899889999689-999999999976489999999988

>d1g4us2 c.45.1.2 (S:297-539) SptP tyrosine phosphatase, catalytic domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Higher-molecular-weight phosphotyrosine protein phosphatases
domain: SptP tyrosine phosphatase, catalytic domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.39  E-value=1.8e-06  Score=60.46  Aligned_cols=93  Identities=14%  Similarity=0.048  Sum_probs=61.9

Q ss_pred             EEEC-CCCCCCCCCCHHHHHHHHHHHHHHHHHH-------CCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             8637-7899999997289999999999999950-------9985399999357995437899999999803886288999
Q 001565           85 VLDY-PRQYEGCPLLPMSLIQHFLRVCEHWLLL-------GDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGERRTL  156 (1052)
Q Consensus        85 V~d~-p~~d~g~P~p~L~~L~~~c~~i~~WL~~-------d~~~NVvvVHCk~Gkgrt~g~miaayLiy~~~~~~~~~AL  156 (1052)
                      ..+| .|.|+|.|. ..+.|+.|++.+..+...       ..+ .-+||||.+|.||| |+++|+..+....--.-.+++
T Consensus       137 h~~y~~Wpd~~vP~-~~~~l~~li~~v~~~~~~~~~~~~~~~~-~PivVHCsaGvGRT-Gtf~a~~~l~~~~~vdv~~iv  213 (243)
T d1g4us2         137 VLHVKNWPDHQPLP-STDQLEYLADRVKNSNQNGAPGRSSSDK-HLPMIHCLGGVGRT-GTMAAALVLKDNPHSNLEQVR  213 (243)
T ss_dssp             EEEECSCCTTSCCS-CHHHHHHHHHHHHC-------------C-CCEEEECSSSSSHH-HHHHHHHHHHHCTTCCHHHHH
T ss_pred             EEEECCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCEEEEECCCCCCC-HHHHHHHHHHHCCCCCHHHHH
T ss_conf             99763768889999-8799999999999998752101357888-99899978988710-599999999764999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             9999836833013488999883588999999
Q 001565          157 EIVHREAPKGFLQLLSPLNPFPSQLRYLQYV  187 (1052)
Q Consensus       157 ~~~~k~~~~~~~q~~s~~n~~PSQ~RYv~Yf  187 (1052)
                      ..+.++++..   .+    ....|-+||+-.
T Consensus       214 ~~lR~qR~~~---mV----qt~~QY~flY~~  237 (243)
T d1g4us2         214 ADFRDSRNNR---ML----EDASQFVQLKAM  237 (243)
T ss_dssp             HHHHTTSCTT---TT----CCHHHHHHHHHH
T ss_pred             HHHHHCCCCC---CC----CCHHHHHHHHHH
T ss_conf             9998548998---88----999999999999

>d1jlna_ c.45.1.2 (A:) Tyrosine phosphatase {Mouse (Mus musculus), ptp-sl/br7 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Higher-molecular-weight phosphotyrosine protein phosphatases
domain: Tyrosine phosphatase
species: Mouse (Mus musculus), ptp-sl/br7 [TaxId: 10090]

Probab=97.95  E-value=4.8e-05  Score=50.39  Aligned_cols=89  Identities=9%  Similarity=0.090  Sum_probs=58.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHCC
Q ss_conf             7899999997289999999999999950998539999935799543789999999980388----628899999998368
Q 001565           89 PRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLH----SGERRTLEIVHREAP  164 (1052)
Q Consensus        89 p~~d~g~P~p~L~~L~~~c~~i~~WL~~d~~~NVvvVHCk~Gkgrt~g~miaayLiy~~~~----~~~~~AL~~~~k~~~  164 (1052)
                      .|.|+|.|. ....++.|++.+..+........=+||||.+|.||+ |+.+|...+...+-    -.-.+++..+.++++
T Consensus       192 ~Wpd~~vP~-~~~~~l~~i~~v~~~~~~~~~~~PivVHCsaGvGRt-G~fial~~~l~~l~~~~~vdv~~~v~~lR~qR~  269 (297)
T d1jlna_         192 SWPDHKTPD-SAQPLLQLMLDVEEDRLASEGRGPVVVHCSAGIGRT-GCFIATSIGCQQLKEEGVVDALSIVCQLRVDRG  269 (297)
T ss_dssp             CSCTTSSCS-CSHHHHHHHHHHHHHHHTCTTSCCEEEESSSSSHHH-HHHHHHHHHHHHHHHHSEECHHHHHHHHHHHST
T ss_pred             CCCCCCCCC-CHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCH-HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
T ss_conf             868889899-848899999999987750367871688744532330-279999999999860699899999999985255


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             33013488999883588999999
Q 001565          165 KGFLQLLSPLNPFPSQLRYLQYV  187 (1052)
Q Consensus       165 ~~~~q~~s~~n~~PSQ~RYv~Yf  187 (1052)
                      .    .+    ....|-+|++..
T Consensus       270 ~----~V----qt~~QY~Fiy~~  284 (297)
T d1jlna_         270 G----MV----QTSEQYEFVHHA  284 (297)
T ss_dssp             T----SS----CSHHHHHHHHHH
T ss_pred             C----CC----CCHHHHHHHHHH
T ss_conf             5----46----989999999999

>d1wcha_ c.45.1.2 (A:) Tyrosine-protein phosphatase, non-receptor type 13 (PTPL1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Higher-molecular-weight phosphotyrosine protein phosphatases
domain: Tyrosine-protein phosphatase, non-receptor type 13 (PTPL1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=3.7e-05  Score=51.19  Aligned_cols=85  Identities=11%  Similarity=0.060  Sum_probs=54.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCC----CCCHHHHHHHHHHHCC
Q ss_conf             789999999728999999999999995099853999993579954378999999998038----8628899999998368
Q 001565           89 PRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKL----HSGERRTLEIVHREAP  164 (1052)
Q Consensus        89 p~~d~g~P~p~L~~L~~~c~~i~~WL~~d~~~NVvvVHCk~Gkgrt~g~miaayLiy~~~----~~~~~~AL~~~~k~~~  164 (1052)
                      .|.|+|+|. ....++.|++.+...-.   . +=+||||.+|.||| |+.+|+..+...+    .-.-.+++..+..+++
T Consensus       206 ~Wpd~~vP~-~~~~~l~~l~~v~~~~~---~-~PivVHCsaGvGRt-G~fia~d~~l~~l~~~~~vdv~~~v~~lR~qR~  279 (308)
T d1wcha_         206 AWPDHDTPS-QPDDLLTFISYMRHIHR---S-GPIITHCSAGIGRS-GTLICIDVVLGLISQDLDFDISDLVRCMRLQRH  279 (308)
T ss_dssp             SCCTTSCCS-CHHHHHHHHHHHHHHCC---S-SCEEEECSSSSHHH-HHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTST
T ss_pred             CCCCCCCCC-CCHHHHHHHHHHHHHCC---C-CCEEEEECCCCCHH-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
T ss_conf             753345578-81469999999998506---7-84799834555333-899999999999970698789999999985276


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             33013488999883588999999
Q 001565          165 KGFLQLLSPLNPFPSQLRYLQYV  187 (1052)
Q Consensus       165 ~~~~q~~s~~n~~PSQ~RYv~Yf  187 (1052)
                          ..+    ....|-+|++..
T Consensus       280 ----~~V----qt~~QY~f~y~~  294 (308)
T d1wcha_         280 ----GMV----QTEDQYIFCYQV  294 (308)
T ss_dssp             ----TCS----CSHHHHHHHHHH
T ss_pred             ----CCC----CCHHHHHHHHHH
T ss_conf             ----657----989999999999

>d2shpa1 c.45.1.2 (A:219-525) Tyrosine phosphatase {Human (Homo sapiens), shp-2 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Higher-molecular-weight phosphotyrosine protein phosphatases
domain: Tyrosine phosphatase
species: Human (Homo sapiens), shp-2 [TaxId: 9606]

Probab=97.88  E-value=3.6e-05  Score=51.24  Aligned_cols=89  Identities=12%  Similarity=0.122  Sum_probs=58.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCC----C---CCHHHHHHHHHH
Q ss_conf             789999999728999999999999995099853999993579954378999999998038----8---628899999998
Q 001565           89 PRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKL----H---SGERRTLEIVHR  161 (1052)
Q Consensus        89 p~~d~g~P~p~L~~L~~~c~~i~~WL~~d~~~NVvvVHCk~Gkgrt~g~miaayLiy~~~----~---~~~~~AL~~~~k  161 (1052)
                      .|.|+|.|. ....++.|++.+..+......++-+||||.+|.||+ |+.+|...+...+    .   -.-.+++..+.+
T Consensus       204 ~Wpd~~vP~-~~~~ll~li~~v~~~~~~~~~~~PivVHCs~GvgRt-Gtfia~~~~l~~l~~~~~~~~vdv~~~V~~lR~  281 (307)
T d2shpa1         204 TWPDHGVPS-DPGGVLDFLEEVHHKQESIMDAGPVVVHCSAGIGRT-GTFIVIDILIDIIREKGVDCDIDVPKTIQMVRS  281 (307)
T ss_dssp             CCCSSSCCS-CHHHHHHHHHHHHHHHHHSTTCCCEEEECSSSSHHH-HHHHHHHHHHHHHHHHCTTSEECHHHHHHHHHT
T ss_pred             CCCCCCCCC-CHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHH-HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf             889889789-837899999999998641467898799948998579-999999999999997199976589999999985


Q ss_pred             HCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             36833013488999883588999999
Q 001565          162 EAPKGFLQLLSPLNPFPSQLRYLQYV  187 (1052)
Q Consensus       162 ~~~~~~~q~~s~~n~~PSQ~RYv~Yf  187 (1052)
                      +++    ..|    ....|-.|++..
T Consensus       282 qR~----~~V----qt~~QY~fiy~~  299 (307)
T d2shpa1         282 QRS----GMV----QTEAQYRSIYMA  299 (307)
T ss_dssp             TST----TSS----CCHHHHHHHHHH
T ss_pred             HCC----CCC----CCHHHHHHHHHH
T ss_conf             254----314----999999999999

>d1l8ka_ c.45.1.2 (A:) Tyrosine phosphatase {Human (Homo sapiens), T-cell [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Higher-molecular-weight phosphotyrosine protein phosphatases
domain: Tyrosine phosphatase
species: Human (Homo sapiens), T-cell [TaxId: 9606]

Probab=97.83  E-value=5e-05  Score=50.23  Aligned_cols=89  Identities=16%  Similarity=0.122  Sum_probs=57.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCH----HHHHHHHHHHCC
Q ss_conf             7899999997289999999999999950998539999935799543789999999980388628----899999998368
Q 001565           89 PRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHSGE----RRTLEIVHREAP  164 (1052)
Q Consensus        89 p~~d~g~P~p~L~~L~~~c~~i~~WL~~d~~~NVvvVHCk~Gkgrt~g~miaayLiy~~~~~~~----~~AL~~~~k~~~  164 (1052)
                      .|.|+|.|. ....+..|+..+..........+-+||||.+|.||+ |+.+|...+...+-.+.    .+++..+   +.
T Consensus       175 ~Wpd~~~P~-~~~~~~~l~~~v~~~~~~~~~~~PivVHCs~GvgRt-Gtf~al~~~~~~l~~~~~vdv~~~v~~l---R~  249 (273)
T d1l8ka_         175 TWPDFGVPE-SPASFLNFLFKVRESGSLNPDHGPAVIHCSAGIGRS-GTFSLVDTCLVLMEKGDDINIKQVLLNM---RK  249 (273)
T ss_dssp             CCCSSSCCS-CSHHHHHHHHHHHHTTTTSTTSCCEEEEESSSSSHH-HHHHHHHHHHHHSSSSCCCCHHHHHHHH---TT
T ss_pred             CCCCCCCCC-CHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCE-EHHHHHHHHHHHHHHCCCCCHHHHHHHH---HH
T ss_conf             445589999-879999999999986302799862899704664314-3299999999999737986999999999---97


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             33013488999883588999999
Q 001565          165 KGFLQLLSPLNPFPSQLRYLQYV  187 (1052)
Q Consensus       165 ~~~~q~~s~~n~~PSQ~RYv~Yf  187 (1052)
                      .|. ..+    ....|.+|+++.
T Consensus       250 qR~-~~V----qt~~QY~f~y~~  267 (273)
T d1l8ka_         250 YRM-GLI----QTPDQLRFSYMA  267 (273)
T ss_dssp             TBT-TCS----CSHHHHHHHHHH
T ss_pred             HCC-CCC----CCHHHHHHHHHH
T ss_conf             342-104----999999999999

>d1fpra_ c.45.1.2 (A:) Tyrosine phosphatase {Human (Homo sapiens), shp-1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Higher-molecular-weight phosphotyrosine protein phosphatases
domain: Tyrosine phosphatase
species: Human (Homo sapiens), shp-1 [TaxId: 9606]

Probab=97.74  E-value=0.00018  Score=46.30  Aligned_cols=94  Identities=14%  Similarity=0.224  Sum_probs=58.8

Q ss_pred             EEEEC---CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCC-------CCHH
Q ss_conf             78637---7899999997289999999999999950998539999935799543789999999980388-------6288
Q 001565           84 TVLDY---PRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLH-------SGER  153 (1052)
Q Consensus        84 ~V~d~---p~~d~g~P~p~L~~L~~~c~~i~~WL~~d~~~NVvvVHCk~Gkgrt~g~miaayLiy~~~~-------~~~~  153 (1052)
                      .|.+|   .|.+++.|. ....++.|++.+......-.+.+-+||||.+|.||+ |+.+|...+...+-       -.-.
T Consensus       166 ~V~h~~y~~Wpd~~~P~-~~~~~l~l~~~v~~~~~~~~~~~PivVHCs~G~gRt-G~fial~~~~~~l~~~~~~~~vdv~  243 (284)
T d1fpra_         166 EIWHYQYLSWPDHGVPS-EPGGVLSFLDQINQRQESLPHAGPIIVHSSAGIGRT-GTIIVIDMLMENISTKGLDCDIDIQ  243 (284)
T ss_dssp             EEEECCBCCSCTTSCCS-CSHHHHHHHHHHHHHHTTSTTCCCEEEESSBSSHHH-HHHHHHHHHHHHHHHHCTTSCCCHH
T ss_pred             EEEEEEECCCCCCCCCC-CHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC-HHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf             99988617887568999-989999999999999860688998899958997103-2999999999999961999764899


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             9999999836833013488999883588999999
Q 001565          154 RTLEIVHREAPKGFLQLLSPLNPFPSQLRYLQYV  187 (1052)
Q Consensus       154 ~AL~~~~k~~~~~~~q~~s~~n~~PSQ~RYv~Yf  187 (1052)
                      +++..+.++++    ..+    ....|-.|++..
T Consensus       244 ~~v~~lR~qR~----~~V----~t~~QY~f~y~~  269 (284)
T d1fpra_         244 KTIQMVRAQRS----GMV----QTEAQYKFIYVA  269 (284)
T ss_dssp             HHHHHHHTTST----TSS----CSSHHHHHHHHH
T ss_pred             HHHHHHHHHCC----CCC----CCHHHHHHHHHH
T ss_conf             99999986374----216----999999999999

>d1lara1 c.45.1.2 (A:1307-1623) RPTP Lar {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Higher-molecular-weight phosphotyrosine protein phosphatases
domain: RPTP Lar
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=0.00035  Score=44.29  Aligned_cols=87  Identities=11%  Similarity=0.114  Sum_probs=54.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCC----CCCHHHHHHHHHHHCC
Q ss_conf             789999999728999999999999995099853999993579954378999999998038----8628899999998368
Q 001565           89 PRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKL----HSGERRTLEIVHREAP  164 (1052)
Q Consensus        89 p~~d~g~P~p~L~~L~~~c~~i~~WL~~d~~~NVvvVHCk~Gkgrt~g~miaayLiy~~~----~~~~~~AL~~~~k~~~  164 (1052)
                      -|.|++.| .....++.|++.+..+-. ... +-+||||.+|.||+ |+.+|...+...+    .-.-.+++..+.++++
T Consensus       181 ~Wpd~~~P-~~~~~~l~~i~~v~~~~~-~~~-~PivVHCs~GvGRt-G~f~al~~~~~~l~~~~~vdv~~~v~~lR~qR~  256 (317)
T d1lara1         181 AWPDHGVP-EYPTPILAFLRRVKACNP-LDA-GPMVVHCSAGVGRT-GCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRN  256 (317)
T ss_dssp             CSCSSSCC-SCSHHHHHHHHHHHHHSC-TTC-CCEEEESSSSSSHH-HHHHHHHHHHHHHHHHSCCCHHHHHHHHHTTST
T ss_pred             CCCCCCCC-CCHHHHHHHHHHHHHHHC-CCC-CCEEEEECCCCCCE-EEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
T ss_conf             75557988-998999999999997406-788-73899952543214-034046758999855798799999999974244


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             33013488999883588999999
Q 001565          165 KGFLQLLSPLNPFPSQLRYLQYV  187 (1052)
Q Consensus       165 ~~~~q~~s~~n~~PSQ~RYv~Yf  187 (1052)
                          ..+    ....|-+|+++.
T Consensus       257 ----~~V----~t~~QY~fiy~~  271 (317)
T d1lara1         257 ----YMV----QTEDQYVFIHEA  271 (317)
T ss_dssp             ----TSS----CSHHHHHHHHHH
T ss_pred             ----CCC----CCHHHHHHHHHH
T ss_conf             ----514----999999999999

>d2f71a1 c.45.1.2 (A:2-298) Tyrosine phosphatase {Human (Homo sapiens), 1B [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Higher-molecular-weight phosphotyrosine protein phosphatases
domain: Tyrosine phosphatase
species: Human (Homo sapiens), 1B [TaxId: 9606]

Probab=97.63  E-value=0.00014  Score=47.07  Aligned_cols=89  Identities=13%  Similarity=0.055  Sum_probs=55.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHC----CCCC---HHHHHHHHHH
Q ss_conf             78999999972899999999999999509985399999357995437899999999803----8862---8899999998
Q 001565           89 PRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRK----LHSG---ERRTLEIVHR  161 (1052)
Q Consensus        89 p~~d~g~P~p~L~~L~~~c~~i~~WL~~d~~~NVvvVHCk~Gkgrt~g~miaayLiy~~----~~~~---~~~AL~~~~k  161 (1052)
                      .|.|+|.|. ....++.|++.+..........+=+||||.+|.||+ |+.+|...++..    .-.+   -.+++..+  
T Consensus       177 ~Wpd~~vP~-~~~~~l~l~~~v~~~~~~~~~~~PivVHCs~G~gRt-Gtf~ald~~~~~l~~~~~~~~vdV~~~v~~l--  252 (297)
T d2f71a1         177 TWPDFGVPE-SPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRS-GTFCLADTCLLLMDKRKDPSSVDIKKVLLEM--  252 (297)
T ss_dssp             CCCTTCCCS-CHHHHHHHHHHHHHTTTTCTTSCCEEEECSSSSHHH-HHHHHHHHHHHHHHHHTCGGGCCHHHHHHHH--
T ss_pred             CCCCCCCCC-CHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCE-EHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH--
T ss_conf             765579999-879999999999986213888863999603556753-2368999999999861699764899999999--


Q ss_pred             HCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             36833013488999883588999999
Q 001565          162 EAPKGFLQLLSPLNPFPSQLRYLQYV  187 (1052)
Q Consensus       162 ~~~~~~~q~~s~~n~~PSQ~RYv~Yf  187 (1052)
                       +..|. ..+    ....|..|++..
T Consensus       253 -R~qR~-~~V----qt~~QY~f~y~~  272 (297)
T d2f71a1         253 -RKFRM-GLI----QTADQLRFSYLA  272 (297)
T ss_dssp             -TTTST-TCS----CSHHHHHHHHHH
T ss_pred             -HHHCC-CCC----CCHHHHHHHHHH
T ss_conf             -86056-213----999999999999

>d1lara2 c.45.1.2 (A:1628-1876) RPTP Lar {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Higher-molecular-weight phosphotyrosine protein phosphatases
domain: RPTP Lar
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=0.00023  Score=45.54  Aligned_cols=90  Identities=10%  Similarity=0.075  Sum_probs=56.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHCC
Q ss_conf             78999999972899999999999999509985399999357995437899999999803886----28899999998368
Q 001565           89 PRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLHS----GERRTLEIVHREAP  164 (1052)
Q Consensus        89 p~~d~g~P~p~L~~L~~~c~~i~~WL~~d~~~NVvvVHCk~Gkgrt~g~miaayLiy~~~~~----~~~~AL~~~~k~~~  164 (1052)
                      .|.|++.|. ....++.|.+.+...........=+||||.+|.||+ |+.++...+...+-.    .-.+++..+.++  
T Consensus       149 ~Wpd~~~P~-~~~~~~~li~~v~~~~~~~~~~~pivVhc~~G~gRs-g~f~~~~~~~~~l~~~~~vdv~~~v~~lR~q--  224 (249)
T d1lara2         149 DWPEQGVPK-TGEGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRT-GVFITLSIVLERMRYEGVVDMFQTVKTLRTQ--  224 (249)
T ss_dssp             CSCSSSCCS-SCHHHHHHHHHHHHHHHHTTCCSCEEEESSSSSSHH-HHHHHHHHHHHHHHHHSEECHHHHHHHHTTT--
T ss_pred             CCCCCCCCC-CHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEE-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--
T ss_conf             777678899-989999999999986652588875799878997100-4899999999999727998999999999864--


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             330134889998835889999999
Q 001565          165 KGFLQLLSPLNPFPSQLRYLQYVA  188 (1052)
Q Consensus       165 ~~~~q~~s~~n~~PSQ~RYv~Yf~  188 (1052)
                            +.+.+....|.+|++..-
T Consensus       225 ------R~~~v~~~~Qy~f~y~~l  242 (249)
T d1lara2         225 ------RPAMVQTEDQYQLCYRAA  242 (249)
T ss_dssp             ------STTSSCSHHHHHHHHHHH
T ss_pred             ------CCCCCCCHHHHHHHHHHH
T ss_conf             ------534259999999999999

>d1rpma_ c.45.1.2 (A:) Tyrosine phosphatase {Human (Homo sapiens), mu [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Higher-molecular-weight phosphotyrosine protein phosphatases
domain: Tyrosine phosphatase
species: Human (Homo sapiens), mu [TaxId: 9606]

Probab=97.51  E-value=0.00019  Score=46.10  Aligned_cols=87  Identities=8%  Similarity=0.065  Sum_probs=56.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCC----CCCHHHHHHHHHHHCC
Q ss_conf             789999999728999999999999995099853999993579954378999999998038----8628899999998368
Q 001565           89 PRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKL----HSGERRTLEIVHREAP  164 (1052)
Q Consensus        89 p~~d~g~P~p~L~~L~~~c~~i~~WL~~d~~~NVvvVHCk~Gkgrt~g~miaayLiy~~~----~~~~~~AL~~~~k~~~  164 (1052)
                      .|.|+++|. ....+++|++.+...... .. +=++|||.+|.||+ |+.+|...+...+    .-.-.+++..+.++++
T Consensus       182 ~Wpd~~~P~-~~~~~l~~i~~v~~~~~~-~~-~PivVHCs~G~gRs-G~f~al~~~~~~l~~~~~vdv~~~v~~lR~qR~  257 (278)
T d1rpma_         182 GWPDHGVPY-HATGLLGFVRQVKSKSPP-SA-GPLVVHCSAGAGRT-GCFIVIDIMLDMAEREGVVDIYNCVRELRSRRV  257 (278)
T ss_dssp             CSCSSSCCS-CSHHHHHHHHHHHHHSCT-TS-CCEEEESSSSSHHH-HHHHHHHHHHHHHHHHSEECHHHHHHHHHHHST
T ss_pred             CCCCCCCCC-CHHHHHHHHHHHHHHHCC-CC-CCEEEEECCCCHHH-HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
T ss_conf             605678899-878999999999997378-89-98899938995032-699999999999974798799999999986365


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             33013488999883588999999
Q 001565          165 KGFLQLLSPLNPFPSQLRYLQYV  187 (1052)
Q Consensus       165 ~~~~q~~s~~n~~PSQ~RYv~Yf  187 (1052)
                      .-    +    ....|-+|++..
T Consensus       258 ~~----V----~t~~QY~f~y~~  272 (278)
T d1rpma_         258 NM----V----QTEEQYVFIHDA  272 (278)
T ss_dssp             TS----S----CSHHHHHHHHHH
T ss_pred             CC----C----CCHHHHHHHHHH
T ss_conf             31----5----999999999999

>d1yfoa_ c.45.1.2 (A:) Tyrosine phosphatase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Higher-molecular-weight phosphotyrosine protein phosphatases
domain: Tyrosine phosphatase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.46  E-value=0.00023  Score=45.61  Aligned_cols=95  Identities=13%  Similarity=0.126  Sum_probs=55.9

Q ss_pred             EEEEC---CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCC-CCHHHHHHHH
Q ss_conf             78637---7899999997289999999999999950998539999935799543789999999980388-6288999999
Q 001565           84 TVLDY---PRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKLH-SGERRTLEIV  159 (1052)
Q Consensus        84 ~V~d~---p~~d~g~P~p~L~~L~~~c~~i~~WL~~d~~~NVvvVHCk~Gkgrt~g~miaayLiy~~~~-~~~~~AL~~~  159 (1052)
                      .|.+|   .|.|+|.|. ....++.|++.+..+-... . +-+||||.+|.||+ |+.+|...+...+- .+.-+-.+.+
T Consensus       183 ~V~h~~y~~Wpd~~~P~-~~~~~l~l~~~v~~~~~~~-~-~PivVHCs~G~gRt-G~f~al~~~~~~l~~~~~vdv~~~v  258 (288)
T d1yfoa_         183 LITQFHFTSWPDFGVPF-TPIGMLKFLKKVKACNPQY-A-GAIVVHCSAGVGRT-GTFVVIDAMLDMMHSERKVDVYGFV  258 (288)
T ss_dssp             EEEEEEECCCCSSSCCS-CSHHHHHHHHHHHHHSCTT-S-CCEEEECSSSSHHH-HHHHHHHHHHHHHHHSSEECHHHHH
T ss_pred             EEEEEEECCCCCCCCCC-CHHHHHHHHHHHHHHCCCC-C-CCEEEEECCCCCCC-HHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf             99999738999789889-9899999999999851356-8-83799807998426-8999999999999847987899999


Q ss_pred             HHHCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             9836833013488999883588999999
Q 001565          160 HREAPKGFLQLLSPLNPFPSQLRYLQYV  187 (1052)
Q Consensus       160 ~k~~~~~~~q~~s~~n~~PSQ~RYv~Yf  187 (1052)
                      .+-+..| .+.+    ....|-+|++..
T Consensus       259 ~~lR~qR-~~~V----~t~~QY~f~y~~  281 (288)
T d1yfoa_         259 SRIRAQR-CQMV----QTDMQYVFIYQA  281 (288)
T ss_dssp             HHHTTTS-TTSS----CSHHHHHHHHHH
T ss_pred             HHHHHHC-CCCC----CCHHHHHHHHHH
T ss_conf             9998546-6657----999999999999

>d1lyva_ c.45.1.2 (A:) Protein-tyrosine phosphatase YopH, catalytic domain {Yersinia enterocolitica [TaxId: 630]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Higher-molecular-weight phosphotyrosine protein phosphatases
domain: Protein-tyrosine phosphatase YopH, catalytic domain
species: Yersinia enterocolitica [TaxId: 630]

Probab=97.42  E-value=0.00024  Score=45.38  Aligned_cols=96  Identities=10%  Similarity=-0.011  Sum_probs=53.9

Q ss_pred             EEEC---CCCCCCCCCC-HHHHHHHHHHHHHHHHHH------------CCCCCEEEEEECCCCCCHHHHHHHHHHHHHCC
Q ss_conf             8637---7899999997-289999999999999950------------99853999993579954378999999998038
Q 001565           85 VLDY---PRQYEGCPLL-PMSLIQHFLRVCEHWLLL------------GDHQNVILLHSERGGWPLLAFLLASLLIFRKL  148 (1052)
Q Consensus        85 V~d~---p~~d~g~P~p-~L~~L~~~c~~i~~WL~~------------d~~~NVvvVHCk~Gkgrt~g~miaayLiy~~~  148 (1052)
                      |.+|   .|.|+|.|.. ....++.|++.+..+...            ..+ .-+||||.+|.||+ |+.+|++++... 
T Consensus       161 V~h~~y~~Wpd~~~p~~~~~~~ll~li~~v~~~~~~~~~~~~~~~~~~~~~-~PivVHCs~GvGRt-Gtfia~~~~~~~-  237 (283)
T d1lyva_         161 VPVVHVGNWPDQTAVSSEVTKALASLVDQTAETKRNMYESKGSSAVADDSK-LRPVIHSRAGVGRT-AQLIGAMCMNDS-  237 (283)
T ss_dssp             EEEEEECCCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGGCTTS-SCCEEECSSSSSHH-HHHHHHHHHTCG-
T ss_pred             EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CCEEEEECCCCCHH-HHHHHHHHHHHH-
T ss_conf             999997775446899832069999999999999875543035444466788-98799968997579-999999999996-


Q ss_pred             CCCH---HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             8628---89999999836833013488999883588999999994
Q 001565          149 HSGE---RRTLEIVHREAPKGFLQLLSPLNPFPSQLRYLQYVARR  190 (1052)
Q Consensus       149 ~~~~---~~AL~~~~k~~~~~~~q~~s~~n~~PSQ~RYv~Yf~~l  190 (1052)
                      ..+.   .+++..+.+++...   .|    ....|.+||+-+..-
T Consensus       238 ~~~~vdv~~~v~~lR~qR~~~---mV----qt~~QY~fly~~~~~  275 (283)
T d1lyva_         238 RNSQLSVEDMVSQMRVQRNGI---MV----QKDEQLDVLIKLAEG  275 (283)
T ss_dssp             GGTTCCHHHHHHHHHHHTCTT---SS----CSHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHCCCCC---CC----CCHHHHHHHHHHHHH
T ss_conf             059979999999998349998---88----999999999999999

>d1p15a_ c.45.1.2 (A:) Protein-tyrosine phosphatase alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Higher-molecular-weight phosphotyrosine protein phosphatases
domain: Protein-tyrosine phosphatase alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.33  E-value=0.00019  Score=46.13  Aligned_cols=89  Identities=11%  Similarity=0.095  Sum_probs=55.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCC----CCCHHHHHHHHHHHCC
Q ss_conf             789999999728999999999999995099853999993579954378999999998038----8628899999998368
Q 001565           89 PRQYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGWPLLAFLLASLLIFRKL----HSGERRTLEIVHREAP  164 (1052)
Q Consensus        89 p~~d~g~P~p~L~~L~~~c~~i~~WL~~d~~~NVvvVHCk~Gkgrt~g~miaayLiy~~~----~~~~~~AL~~~~k~~~  164 (1052)
                      .|.|++.|. .-..++.|++.+..+-..... .=+||||.+|-||+ |+.+|...+...+    .-.-.+++..+.+++.
T Consensus       147 ~Wpd~~~P~-~~~~~l~~~~~v~~~~~~~~~-~PivVHCs~G~gRs-g~f~a~~~~~~~l~~~~~vdv~~~v~~lR~qR~  223 (245)
T d1p15a_         147 GWPEVGIPS-DGKGMINIIAAVQKQQQQSGN-HPITVHCSAGAGRT-GTFCALSTVLERVKAEGILDVFQTVKSLRLQRP  223 (245)
T ss_dssp             CSCSSSCCS-SSCSHHHHHHHHHHHTTTTTS-CCEEEESSSSSHHH-HHHHHHHHHHHHHHHHSCCCTTHHHHHHHTTST
T ss_pred             CCCCCCCCC-CHHHHHHHHHHHHHHHCCCCC-CCEEEECCCCCCCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
T ss_conf             787557898-989999999999864224899-87888748998330-189999999999970799689999999987363


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             330134889998835889999999
Q 001565          165 KGFLQLLSPLNPFPSQLRYLQYVA  188 (1052)
Q Consensus       165 ~~~~q~~s~~n~~PSQ~RYv~Yf~  188 (1052)
                          +.+    ....|..|++..-
T Consensus       224 ----~~v----qt~~QY~f~y~~l  239 (245)
T d1p15a_         224 ----HMV----QTLEQYEFCYKVV  239 (245)
T ss_dssp             ----TSS----CSTTTTHHHHHHH
T ss_pred             ----CCC----CCHHHHHHHHHHH
T ss_conf             ----203----9899999999999

>d1ywfa1 c.45.1.5 (A:4-275) Phosphotyrosine protein phosphatase PtpB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Mycobacterial PtpB-like
domain: Phosphotyrosine protein phosphatase PtpB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.18  E-value=0.052  Score=28.92  Aligned_cols=27  Identities=26%  Similarity=0.213  Sum_probs=21.9

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHCC
Q ss_conf             3999993579954378999999998038
Q 001565          121 NVILLHSERGGWPLLAFLLASLLIFRKL  148 (1052)
Q Consensus       121 NVvvVHCk~Gkgrt~g~miaayLiy~~~  148 (1052)
                      .-|++||.+||-|| |+++|-+|...|.
T Consensus       151 ~pvL~HCtaGKDRT-G~~aallL~llGV  177 (272)
T d1ywfa1         151 RPVLTHCFAGKDRT-GFVVALVLEAVGL  177 (272)
T ss_dssp             CCEEEECSSSSSHH-HHHHHHHHHHTTC
T ss_pred             CCEEEECCCCCCCH-HHHHHHHHHHCCC
T ss_conf             97798527888306-8999999998399

>d1ohea1 c.45.1.1 (A:42-198) Proline directed phosphatase CDC14b2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Proline directed phosphatase CDC14b2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.28  E-value=0.17  Score=25.35  Aligned_cols=109  Identities=15%  Similarity=0.168  Sum_probs=67.9

Q ss_pred             CCCCEEE-EECCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHCCCCCEEEECCC
Q ss_conf             9996245-508379970678899978300023599999998430999969999313797452344531014837863778
Q 001565           12 PPDGLLE-FIERVYVFDSCFSTEVVPDGMYQLYLHEILTELHEEFPDSAFLAFNFREGEKQSEFAEILCEYDVTVLDYPR   90 (1052)
Q Consensus        12 ~~lDLty-IT~RIivm~~~fPae~~~E~~yRN~i~dV~~~L~~~h~~~~y~V~NLs~~~~~~~~~~~~s~f~~~V~d~p~   90 (1052)
                      +..|+.. |.+|++-.  ++-.  -+++                 .. +...|+.-++ .         .|+.-.     
T Consensus         3 ~~~~~~~~I~dRLYf~--~~~~--~pk~-----------------t~-~~~yF~iD~e-l---------~Y~~F~-----   45 (157)
T d1ohea1           3 PQDDVYLDITDRLCFA--ILYS--RPKS-----------------AS-NVHYFSIDNE-L---------EYENFY-----   45 (157)
T ss_dssp             GGGCEEEESSSSEEEE--ECSS--CCCC-----------------BT-TEEEEECTTT-S---------CCCCSS-----
T ss_pred             CCCCEEEECCCCEEEE--ECCC--CCCC-----------------CC-CEEEEEECCE-E---------EECCCC-----
T ss_conf             6666068618968999--7467--9999-----------------98-7589995871-6---------883433-----


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC--C-HHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf             999999972899999999999999509985399999357995--4-378999999998038862889999999
Q 001565           91 QYEGCPLLPMSLIQHFLRVCEHWLLLGDHQNVILLHSERGGW--P-LLAFLLASLLIFRKLHSGERRTLEIVH  160 (1052)
Q Consensus        91 ~d~g~P~p~L~~L~~~c~~i~~WL~~d~~~NVvvVHCk~Gkg--r-t~g~miaayLiy~~~~~~~~~AL~~~~  160 (1052)
                      .|.|.  +.|.+|++||..+++-|+....+|-.+|||....-  | -++++||||++-.-.++.++ |+..+.
T Consensus        46 ~DFGP--LNL~~lyrfc~~l~~~L~~~~~~~k~Iv~yts~d~~kraNAa~Lig~Y~Vi~l~~sp~~-a~~~l~  115 (157)
T d1ohea1          46 ADFGP--LNLAMVYRYCCKINKKLKSITMLRKKIVHFTGSDQRKQANAAFLVGCYMVIYLGRTPEE-AYRILI  115 (157)
T ss_dssp             SCCCC--CCHHHHHHHHHHHHHHHHCGGGTTSEEEEEECSCHHHHHHHHHHHHHHHHHHSCCCHHH-HHHHHT
T ss_pred             CCCCC--CHHHHHHHHHHHHHHHHCCHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHH-HHHHHH
T ss_conf             02487--14999999999999997394542976999879987888899999999999981899999-999987