Citrus Sinensis ID: 001580
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1050 | 2.2.26 [Sep-21-2011] | |||||||
| Q42093 | 1623 | ABC transporter C family | yes | no | 0.990 | 0.640 | 0.808 | 0.0 | |
| Q9C8G9 | 1622 | ABC transporter C family | no | no | 0.989 | 0.640 | 0.780 | 0.0 | |
| Q9C8H0 | 1495 | ABC transporter C family | no | no | 0.861 | 0.605 | 0.745 | 0.0 | |
| Q9C8H1 | 1495 | ABC transporter C family | no | no | 0.861 | 0.605 | 0.735 | 0.0 | |
| Q28689 | 1564 | Canalicular multispecific | yes | no | 0.837 | 0.562 | 0.423 | 0.0 | |
| Q63120 | 1541 | Canalicular multispecific | yes | no | 0.853 | 0.581 | 0.416 | 0.0 | |
| Q8ST87 | 1334 | ABC transporter C family | yes | no | 0.850 | 0.669 | 0.420 | 0.0 | |
| Q92887 | 1545 | Canalicular multispecific | yes | no | 0.84 | 0.570 | 0.415 | 0.0 | |
| Q54JR2 | 1412 | ABC transporter C family | no | no | 0.846 | 0.629 | 0.426 | 0.0 | |
| Q5F364 | 1525 | Multidrug resistance-asso | no | no | 0.84 | 0.578 | 0.421 | 0.0 |
| >sp|Q42093|AB2C_ARATH ABC transporter C family member 2 OS=Arabidopsis thaliana GN=ABCC2 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 1706 bits (4417), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 848/1049 (80%), Positives = 944/1049 (89%), Gaps = 9/1049 (0%)
Query: 7 QVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLD 66
QVVNANVSLKR+EE L EE+ILLPNPP+ G PAISIRNGYFSWDSK +RPTL NINLD
Sbjct: 579 QVVNANVSLKRLEEVLATEERILLPNPPIEPGEPAISIRNGYFSWDSKGDRPTLSNINLD 638
Query: 67 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNI 126
+P+GSLVA+VG TGEGKTSLISA+LGELP SDA +RG+VAYVPQVSWIFNATVRDNI
Sbjct: 639 VPLGSLVAVVGSTGEGKTSLISAILGELPATSDAIVTLRGSVAYVPQVSWIFNATVRDNI 698
Query: 127 LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 186
LFGS F+ +YE+AIDVTSL+HDL+LLPGGD+TEIGERGVNISGGQKQRVSMARAVYSNS
Sbjct: 699 LFGSPFDREKYERAIDVTSLKHDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNS 758
Query: 187 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKE 246
DV+IFDDPLSALDAHVG+QVF++CI+ EL KTRVLVTNQLHFLSQVDRI+LVHEG VKE
Sbjct: 759 DVYIFDDPLSALDAHVGQQVFEKCIKRELGQKTRVLVTNQLHFLSQVDRIVLVHEGTVKE 818
Query: 247 EGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDT 306
EGT+E+LS+NG LFQ+LMENAGK+EEY EE + E D +P ANG N L + SD
Sbjct: 819 EGTYEELSSNGPLFQRLMENAGKVEEYSEENGEAEA-DQTAEQPVANGNTNGLQMDGSDD 877
Query: 307 RKTKEG-----KSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVS 361
+K+KEG KSVLIKQEERETGVVS++VL RY+DALGG WVV++LLLCY LTE RV+
Sbjct: 878 KKSKEGNKKGGKSVLIKQEERETGVVSWRVLKRYQDALGGAWVVMMLLLCYVLTEVFRVT 937
Query: 362 SSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAML 421
SSTWLS WTD + K+HGPLFYN IY+LLSFGQVLVTL NSYWLI+SSLYAAK+LHD ML
Sbjct: 938 SSTWLSEWTDAGTPKSHGPLFYNLIYALLSFGQVLVTLTNSYWLIMSSLYAAKKLHDNML 997
Query: 422 HSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVST 481
HSILRAPM FFHTNPLGRIINRFAKDLGDIDR VAVFVNMFMGQVSQLLST VLIGIVST
Sbjct: 998 HSILRAPMSFFHTNPLGRIINRFAKDLGDIDRTVAVFVNMFMGQVSQLLSTVVLIGIVST 1057
Query: 482 MSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDR 541
+SLWAIMPLL+LFY AYLYYQ+TAREVKR+DSI+RSPVYAQFGEALNGLSTIRAYKAYDR
Sbjct: 1058 LSLWAIMPLLVLFYGAYLYYQNTAREVKRMDSISRSPVYAQFGEALNGLSTIRAYKAYDR 1117
Query: 542 MADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFAS 601
MADING+SMD NIR+TLVNMGANRWL IRLE +GGLMIWLTA+FAV+QNG AENQ+AFAS
Sbjct: 1118 MADINGRSMDNNIRFTLVNMGANRWLGIRLETLGGLMIWLTASFAVMQNGRAENQQAFAS 1177
Query: 602 TMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP 661
TMGLLLSYALNITSLLT VLRLASLAENSLNAVERVGNYIE+P EAP VIE+NRPPPGWP
Sbjct: 1178 TMGLLLSYALNITSLLTGVLRLASLAENSLNAVERVGNYIEIPPEAPPVIENNRPPPGWP 1237
Query: 662 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 721
SSGSIKFEDVVLRYRP+LPPVLHG+SF I P+DKVGIVGRTGAGKSS+LN LFRIVE+E+
Sbjct: 1238 SSGSIKFEDVVLRYRPQLPPVLHGVSFFIHPTDKVGIVGRTGAGKSSLLNALFRIVEVEK 1297
Query: 722 GRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHL 781
GRILID D+ KFGLMDLRK+LGIIPQSPVLFSGTVRFNLDPF EH+DADLWE+LERAHL
Sbjct: 1298 GRILIDDCDVGKFGLMDLRKVLGIIPQSPVLFSGTVRFNLDPFGEHNDADLWESLERAHL 1357
Query: 782 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 841
KD IRRN LGLDA+VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI
Sbjct: 1358 KDTIRRNPLGLDAEVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 1417
Query: 842 QKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 901
QKTIREEFKSCTMLIIAHRLNTIIDCD+IL+LDSGRV E+ +PE LLSNEGSSFSKMVQS
Sbjct: 1418 QKTIREEFKSCTMLIIAHRLNTIIDCDKILVLDSGRVQEFSSPENLLSNEGSSFSKMVQS 1477
Query: 902 TGAANAQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDL 961
TGAANA+YLRSLVL + + ++++ + GQR+WLASSRWAAAAQ+ALA SLTSSHNDL
Sbjct: 1478 TGAANAEYLRSLVLDNK---RAKDDSHHLQGQRKWLASSRWAAAAQFALAASLTSSHNDL 1534
Query: 962 QRLEVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLS 1021
Q LE+ED ++ILK+T DAVVTL+ VLEGKHDKEI ESL +H +S +GW S+LYRM+EGL+
Sbjct: 1535 QSLEIEDDSSILKRTNDAVVTLRSVLEGKHDKEIAESLEEHNISREGWLSSLYRMVEGLA 1594
Query: 1022 VMSRLARNRLHQSDYDLEERSIDWDHVEM 1050
VMSRLARNR+ Q DY+ E + DWD+VEM
Sbjct: 1595 VMSRLARNRMQQPDYNFEGNTFDWDNVEM 1623
|
Pump for glutathione S-conjugates. Mediates the transport of S-conjugates such as GSH, S-(2,4-dinitrophenyl)-glutathione (DNP-GS), GSSG, cyanidin 3-glucoside-GS (C3G-GS) and metolachlor-GS (MOC-GS), glucuronides such as 17-beta-estradiol 17-(beta-D-glucuronide) (E(2)17betaG), and of the chlorophyll catabolite such as B.napus nonfluorescent chlorophyll catabolite (Bn-NCC-1). Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 4EC: 4 |
| >sp|Q9C8G9|AB1C_ARATH ABC transporter C family member 1 OS=Arabidopsis thaliana GN=ABCC1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1660 bits (4300), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 819/1049 (78%), Positives = 938/1049 (89%), Gaps = 10/1049 (0%)
Query: 7 QVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLD 66
Q+VNANVSL R+EE L EE++LLPNPP+ G PAISIRNGYFSWDSKA+RPTL NINLD
Sbjct: 579 QMVNANVSLNRLEEVLSTEERVLLPNPPIEPGQPAISIRNGYFSWDSKADRPTLSNINLD 638
Query: 67 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNI 126
IP+GSLVA+VG TGEGKTSLISAMLGELP SDA+ +RG+VAYVPQVSWIFNATVRDNI
Sbjct: 639 IPLGSLVAVVGSTGEGKTSLISAMLGELPARSDATVTLRGSVAYVPQVSWIFNATVRDNI 698
Query: 127 LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 186
LFG+ F+ +YE+ IDVT+LQHDL+LLPGGD+TEIGERGVNISGGQKQRVSMARAVYSNS
Sbjct: 699 LFGAPFDQEKYERVIDVTALQHDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNS 758
Query: 187 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKE 246
DV I DDPLSALDAHVG+QVF++CI+ EL TRVLVTNQLHFLSQVD+I+LVHEG VKE
Sbjct: 759 DVCILDDPLSALDAHVGQQVFEKCIKRELGQTTRVLVTNQLHFLSQVDKILLVHEGTVKE 818
Query: 247 EGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDT 306
EGT+E+L ++G LFQ+LMENAGK+E+Y EE + E VD + KP NG N+L K+ +T
Sbjct: 819 EGTYEELCHSGPLFQRLMENAGKVEDYSEENGEAE-VDQTSVKPVENGNANNLQKDGIET 877
Query: 307 RKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWL 366
+ +KEG SVL+K+EERETGVVS+KVL RY++ALGG WVV++L++CY LT+ RVSSSTWL
Sbjct: 878 KNSKEGNSVLVKREERETGVVSWKVLERYQNALGGAWVVMMLVICYVLTQVFRVSSSTWL 937
Query: 367 SYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILR 426
S WTD + KTHGPLFYN +Y+LLSFGQV VTL NSYWLI+SSLYAAK++HDAML SILR
Sbjct: 938 SEWTDSGTPKTHGPLFYNIVYALLSFGQVSVTLINSYWLIMSSLYAAKKMHDAMLGSILR 997
Query: 427 APMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWA 486
APMVFF TNPLGRIINRFAKD+GDIDR VAVFVNMFMG ++QLLST +LIGIVST+SLWA
Sbjct: 998 APMVFFQTNPLGRIINRFAKDMGDIDRTVAVFVNMFMGSIAQLLSTVILIGIVSTLSLWA 1057
Query: 487 IMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADIN 546
IMPLL++FY AYLYYQ+T+RE+KR+DS TRSPVYAQFGEALNGLS+IRAYKAYDRMA+IN
Sbjct: 1058 IMPLLVVFYGAYLYYQNTSREIKRMDSTTRSPVYAQFGEALNGLSSIRAYKAYDRMAEIN 1117
Query: 547 GKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLL 606
G+SMD NIR+TLVNM ANRWL IRLE++GGLM+WLTA+ AV+QNG A NQ+A+ASTMGLL
Sbjct: 1118 GRSMDNNIRFTLVNMAANRWLGIRLEVLGGLMVWLTASLAVMQNGKAANQQAYASTMGLL 1177
Query: 607 LSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSI 666
LSYAL+ITS LTAVLRLASLAENSLN+VERVGNYIE+PSEAPLVIE+NRPPPGWPSSGSI
Sbjct: 1178 LSYALSITSSLTAVLRLASLAENSLNSVERVGNYIEIPSEAPLVIENNRPPPGWPSSGSI 1237
Query: 667 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 726
KFEDVVLRYRPELPPVLHG+SF I P DKVGIVGRTGAGKSS+LN LFRIVELE+GRILI
Sbjct: 1238 KFEDVVLRYRPELPPVLHGVSFLISPMDKVGIVGRTGAGKSSLLNALFRIVELEKGRILI 1297
Query: 727 DGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIR 786
D DI +FGLMDLRK+LGIIPQ+PVLFSGTVRFNLDPFSEH+DADLWE+LERAHLKD IR
Sbjct: 1298 DECDIGRFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFSEHNDADLWESLERAHLKDTIR 1357
Query: 787 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR 846
RN LGLDA+V+EAGENFSVGQRQLLSL+RALLRRSKILVLDEATAAVDVRTD LIQKTIR
Sbjct: 1358 RNPLGLDAEVTEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDVLIQKTIR 1417
Query: 847 EEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAAN 906
EEFKSCTMLIIAHRLNTIIDCD++L+LDSG+V E+ +PE LLSN SSFSKMVQSTG AN
Sbjct: 1418 EEFKSCTMLIIAHRLNTIIDCDKVLVLDSGKVQEFSSPENLLSNGESSFSKMVQSTGTAN 1477
Query: 907 AQYLRSLVLGGEAENK-LREEN----KQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDL 961
A+YLRS+ L ENK RE N + ++GQR+W ASSRWAAAAQ+ALAVSLTSSHNDL
Sbjct: 1478 AEYLRSITL----ENKRTREANGDDSQPLEGQRKWQASSRWAAAAQFALAVSLTSSHNDL 1533
Query: 962 QRLEVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLS 1021
Q LE+ED N+ILKKTKDAVVTL+ VLEGKHDKEIE+SLNQ ++S + WW +LY+M+EGL+
Sbjct: 1534 QSLEIEDDNSILKKTKDAVVTLRSVLEGKHDKEIEDSLNQSDISRERWWPSLYKMVEGLA 1593
Query: 1022 VMSRLARNRLHQSDYDLEERSIDWDHVEM 1050
VMSRLARNR+ DY+LE +S DWD+VEM
Sbjct: 1594 VMSRLARNRMQHPDYNLEGKSFDWDNVEM 1622
|
Pump for glutathione S-conjugates. Mediates the transport of S-(2,4-dinitrophenyl)-glutathione (DNP-GS), GSSG, cyanidin 3-glucoside-GS (C3G-GS) and metolachlor-GS (MOC-GS). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9C8H0|AB12C_ARATH ABC transporter C family member 12 OS=Arabidopsis thaliana GN=ABCC12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1370 bits (3547), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 678/909 (74%), Positives = 776/909 (85%), Gaps = 4/909 (0%)
Query: 7 QVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLD 66
QVVNANVSL+R+EE LL+EE+IL NPPL G PAISI+NGYFSWDSK +PTL +INL+
Sbjct: 580 QVVNANVSLQRIEELLLSEERILAQNPPLQPGTPAISIKNGYFSWDSKTTKPTLSDINLE 639
Query: 67 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNI 126
IPVG+LVAIVGGTGEGKTSLISAMLGEL S VIRG+VAYVPQVSWIFNATVR+NI
Sbjct: 640 IPVGTLVAIVGGTGEGKTSLISAMLGELSHAETTSVVIRGSVAYVPQVSWIFNATVRENI 699
Query: 127 LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 186
LFGS FE RY +AID T+LQHDLDLLPG D+TEIGERGVNISGGQKQRVSMARAVYSNS
Sbjct: 700 LFGSDFESERYWRAIDATALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNS 759
Query: 187 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKE 246
DV+IFDDPLSALDAHV QVFD C++ EL GKTRVLVTNQLHFL +D+IILV EGM+KE
Sbjct: 760 DVYIFDDPLSALDAHVAHQVFDSCMKDELRGKTRVLVTNQLHFLPLMDKIILVSEGMIKE 819
Query: 247 EGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDT 306
EGTF +LS +G LF+KLMENAGKM+ E + E + + + +L T
Sbjct: 820 EGTFVELSKSGILFKKLMENAGKMDATQEVNTNDENILKLGPTVTVDVSERNL----GST 875
Query: 307 RKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWL 366
++ K +SVLIKQEERETG++S+ VL RYK+A+GGLWVV+ILL CY TE LRVSSSTWL
Sbjct: 876 KQGKRRRSVLIKQEERETGIISWNVLMRYKEAVGGLWVVMILLACYLATEVLRVSSSTWL 935
Query: 367 SYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILR 426
S WTDQS+ K + P FY +Y+LL FGQV VT NS+WLI SSL+AA+RLHDAML SILR
Sbjct: 936 SIWTDQSTSKNYSPGFYIVVYALLGFGQVAVTFTNSFWLITSSLHAARRLHDAMLSSILR 995
Query: 427 APMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWA 486
APM+FFHTNP GR+INRF+KD+GDIDRNVA +NMFM Q+ QLLSTF LIG VST+SLWA
Sbjct: 996 APMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWA 1055
Query: 487 IMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADIN 546
IMPLL+LFYAAYLYYQST+REV+RLDS+TRSP+YAQFGEALNGLS+IRAYKAYDRMA IN
Sbjct: 1056 IMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKIN 1115
Query: 547 GKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLL 606
GKSMD NIR+TL N +NRWL IRLE +GG+MIWLTATFAV+QNG+ NQ FASTMGLL
Sbjct: 1116 GKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLQNGNTNNQAGFASTMGLL 1175
Query: 607 LSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSI 666
LSY LNITSLL+ VLR AS AENSLN+VERVGNYI+LPSEA +IE+NRP GWPS GSI
Sbjct: 1176 LSYTLNITSLLSGVLRQASRAENSLNSVERVGNYIDLPSEATDIIENNRPVCGWPSGGSI 1235
Query: 667 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 726
KFEDV LRYRP LPPVLHGL+F + PS+KVG+VGRTGAGKSSMLN LFRIVE+E+GRI+I
Sbjct: 1236 KFEDVHLRYRPGLPPVLHGLTFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEVEKGRIMI 1295
Query: 727 DGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIR 786
D D+AKFGL D+R++L IIPQSPVLFSGTVRFN+DPFSEH+DA LWEAL RAH+KD I
Sbjct: 1296 DDCDVAKFGLTDVRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDAGLWEALHRAHIKDVIS 1355
Query: 787 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR 846
RN GLDA+V E GENFSVGQRQLLSL+RALLRRSKILVLDEATA+VDVRTD+LIQ+TIR
Sbjct: 1356 RNPFGLDAEVCEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIR 1415
Query: 847 EEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAAN 906
EEFKSCTML+IAHRLNTIIDCD+IL+L SG+VLEYD+P+ELLS + S+F +MV STG AN
Sbjct: 1416 EEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGPAN 1475
Query: 907 AQYLRSLVL 915
AQYL +LV
Sbjct: 1476 AQYLSNLVF 1484
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9C8H1|AB11C_ARATH ABC transporter C family member 11 OS=Arabidopsis thaliana GN=ABCC11 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1350 bits (3493), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 669/909 (73%), Positives = 771/909 (84%), Gaps = 4/909 (0%)
Query: 7 QVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLD 66
Q VNANVSL+R+EE LL+EE+IL NPPL G PAISI+NGYFSWDSK +PTL +INL+
Sbjct: 580 QAVNANVSLQRIEELLLSEERILAQNPPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLE 639
Query: 67 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNI 126
IPVGSLVAIVGGTGEGKTSLISAMLGEL +S IRG+VAYVPQVSWIFNAT+R+NI
Sbjct: 640 IPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVDIRGSVAYVPQVSWIFNATLRENI 699
Query: 127 LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 186
LFGS FE RY +AIDVT+LQHDLDL PG D TEIGERGVNISGGQKQRVSMARAVYSNS
Sbjct: 700 LFGSDFESERYWRAIDVTALQHDLDLFPGRDRTEIGERGVNISGGQKQRVSMARAVYSNS 759
Query: 187 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKE 246
D++IFDDP SALDAHV QVFD C++ EL GKTRVLVTNQLHFL +DRIILV EGM+KE
Sbjct: 760 DIYIFDDPFSALDAHVAHQVFDSCVKHELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKE 819
Query: 247 EGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDT 306
EG F +LS +G LF+KLMENAGKM+ ++ T D SK + +
Sbjct: 820 EGNFAELSKSGTLFKKLMENAGKMDA----TQEVNTNDENISKLGPTVTIDVSERSLGSI 875
Query: 307 RKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWL 366
++ K G+S+L+KQEERETG++S+ V+ RY A+GGLWVV+ILL+CY TE LRV SSTWL
Sbjct: 876 QQGKWGRSMLVKQEERETGIISWDVVMRYNKAVGGLWVVMILLVCYLTTEVLRVLSSTWL 935
Query: 367 SYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILR 426
S WTDQS+ K++ P FY +Y+LL FGQV VT NS+WLI SSL+AAKRLHDAML+SILR
Sbjct: 936 SIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILR 995
Query: 427 APMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWA 486
APM+FF TNP GR+INRF+KD+GDIDRNVA +NMFM Q+ QLLSTF LIGIVST+SLWA
Sbjct: 996 APMLFFETNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGIVSTISLWA 1055
Query: 487 IMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADIN 546
IMPLL+LFYA Y+YYQST+REV+RLDS+TRSP+YA FGEALNGLS+IRAYKAYDRMA IN
Sbjct: 1056 IMPLLILFYATYIYYQSTSREVRRLDSVTRSPIYALFGEALNGLSSIRAYKAYDRMAKIN 1115
Query: 547 GKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLL 606
GKSMD NIR+TL + +NRWL IR E +GG+MIWLTATFAV++ G+AENQ FASTMGLL
Sbjct: 1116 GKSMDNNIRFTLASTSSNRWLTIRSESLGGVMIWLTATFAVLRYGNAENQAVFASTMGLL 1175
Query: 607 LSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSI 666
LSY LNIT+LL+ VLR AS AENSLN+VERVGNYI+LPSEA +IE+NRP GWPS GSI
Sbjct: 1176 LSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSI 1235
Query: 667 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 726
+FEDV LRYRP LPPVLHGLSF + PS+KVG+VGRTGAGKSSMLN L+RIVELE+GRILI
Sbjct: 1236 QFEDVHLRYRPGLPPVLHGLSFFVYPSEKVGVVGRTGAGKSSMLNALYRIVELEKGRILI 1295
Query: 727 DGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIR 786
D +D+AKFGL DLR++L IIPQSPVLFSGTVRFN+DPFSEH+DADLWEALERAH+KD I
Sbjct: 1296 DDYDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVID 1355
Query: 787 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR 846
RN GLDA+VSE GENFSVGQRQLLSL+RALLRRSKIL LDEATA+VDVRTD+LIQ+TIR
Sbjct: 1356 RNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILFLDEATASVDVRTDSLIQRTIR 1415
Query: 847 EEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAAN 906
EEFKSCTMLIIAHRLNTIIDCD+IL+L SG+VLEYD+P+ELLS + S+F KMV STG N
Sbjct: 1416 EEFKSCTMLIIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFKMVHSTGPEN 1475
Query: 907 AQYLRSLVL 915
QYL +LV
Sbjct: 1476 GQYLSNLVF 1484
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q28689|MRP2_RABIT Canalicular multispecific organic anion transporter 1 OS=Oryctolagus cuniculus GN=ABCC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/959 (42%), Positives = 587/959 (61%), Gaps = 80/959 (8%)
Query: 8 VVNANVSLKRMEEFLLAEE---KILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNIN 64
++ A+VS+ R+E++L ++ + +P A+ F+WD E PT+ N+N
Sbjct: 601 MLQASVSVDRLEKYLSGDDLDTSAIQRDPNFDK---AVQFSEASFTWDRNLE-PTIRNVN 656
Query: 65 LDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRD 124
LDI G LVA+VG G GK+SL+SAMLGE+ V I+GT AYVPQ SWI N T++D
Sbjct: 657 LDIMPGQLVAVVGTVGSGKSSLMSAMLGEMENV-HGHITIKGTTAYVPQQSWIQNGTIKD 715
Query: 125 NILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYS 184
NILFG+ F+ RY++ ++ +L DL++LPGGD+ EIGE+G+N+SGGQKQR+S+ARA Y
Sbjct: 716 NILFGAEFDERRYQRVLEACALLPDLEILPGGDLAEIGEKGINLSGGQKQRISLARASYQ 775
Query: 185 NSDVFIFDDPLSALDAHVGRQVFDRCI--RGELSGKTRVLVTNQLHFLSQVDRIILVHEG 242
NSD++I DDPLSA+DAHVG+ +F++ + G L+GKTR+LVT+ LHFL QVD I++V G
Sbjct: 776 NSDIYILDDPLSAVDAHVGKHIFNKVLGPNGLLNGKTRLLVTHSLHFLPQVDEIVVVENG 835
Query: 243 MVKEEGTFEDL-------SNNGELFQKLMENAGK--------------------MEEYVE 275
+ E+G++ L + N ++F K ++ G+ +EE+ E
Sbjct: 836 TILEKGSYSSLLAKKGVFAKNLKMFVKHTDSEGEVTVNDGSEEDDDDDSGLISSIEEFPE 895
Query: 276 E-------KEDG-----------ETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLI 317
+ +E+ K+ K + + PKE + K LI
Sbjct: 896 DSISLTLKRENSLHRTLSRSSRSSGRRLKSLKNSLKAQNGKTPKEEEVVKGQK-----LI 950
Query: 318 KQEERETGVVSFKVLSRYKDALGGLWVVLI-LLLCYFLTETLRVSSSTWLSYWTDQSSLK 376
K+E ETG V F + +Y A+G W ++ ++ Y L + S+ WLS WT S+
Sbjct: 951 KKEFMETGKVKFSIYLKYLQAIG--WCSIVGIIFAYVLNSVAFIGSNLWLSAWTSDSN-- 1006
Query: 377 THGPLFYNT--------IYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAP 428
T+ Y I+ +L Q L L S+W +A+ LH +L++ILRAP
Sbjct: 1007 TYNGTNYPASQRDLRIGIFGVLGLAQGLTVLVASFWSASGCAHASNILHKQLLNNILRAP 1066
Query: 429 MVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIM 488
M FF+T P+GRI+NRFA D+ +D + + +M ++ST ++I + + + I+
Sbjct: 1067 MSFFNTTPIGRIVNRFAGDISTVDDTLPQSLRSWMMCFLAIISTLIMICMATPVFAVIII 1126
Query: 489 PLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGK 548
PL +++ A ++Y +T+R+++RLDS+TRSP+Y+ F E ++GL IRA++ R N
Sbjct: 1127 PLAIIYVAVQVFYVATSRQLRRLDSVTRSPIYSHFTETVSGLPVIRAFEHQQRFLKQNEI 1186
Query: 549 SMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLS 608
+D N + + +NRWLA RLE+VG L+++ +A V+ + +G +LS
Sbjct: 1187 GIDTNQKCVSSWITSNRWLAFRLELVGNLVVFSSALMMVIYRDTLS-----GDVVGFVLS 1241
Query: 609 YALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKF 668
ALNIT L ++R+ S E ++ AVER+ YI++ +EAP V + RPP GWP G I+F
Sbjct: 1242 NALNITQTLNWLVRMTSETETNIVAVERITEYIKVENEAPWVTD-KRPPAGWPHKGEIQF 1300
Query: 669 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 728
+ +RYRPEL VL G++ I +K+G+VGRTGAGKSS+ N LFRI+E G I IDG
Sbjct: 1301 SNYQVRYRPELDLVLKGINCDIKSMEKIGVVGRTGAGKSSLTNCLFRILEAAGGHITIDG 1360
Query: 729 FDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRN 788
DIA GL DLR L IIPQ PVLFSG++R NLDPF+ +SD ++W ALE AHLK +
Sbjct: 1361 IDIASIGLHDLRGKLTIIPQDPVLFSGSLRMNLDPFNNYSDEEIWRALELAHLKSFVAGL 1420
Query: 789 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREE 848
GL +VSEA +N S+GQRQLL L RALLR+SKILVLDEATAAVD+ TD LIQ TIR E
Sbjct: 1421 QHGLSREVSEAEDNLSIGQRQLLCLGRALLRKSKILVLDEATAAVDLETDHLIQTTIRNE 1480
Query: 849 FKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANA 907
F CT++ IAHRL+TI+D D+I++LD+G ++EY +PEELL + G FS M + +G N
Sbjct: 1481 FSHCTVITIAHRLHTIMDSDKIMVLDNGNIVEYGSPEELLESAG-PFSLMAKESGIENV 1538
|
Mediates hepatobiliary excretion of numerous organic anions. Oryctolagus cuniculus (taxid: 9986) |
| >sp|Q63120|MRP2_RAT Canalicular multispecific organic anion transporter 1 OS=Rattus norvegicus GN=Abcc2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 732 bits (1889), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/956 (41%), Positives = 592/956 (61%), Gaps = 60/956 (6%)
Query: 3 VVAWQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLN 62
+V ++ A+VS+ R+E +L ++ +++ A+ F+WD E T+ +
Sbjct: 594 MVTSSILQASVSVDRLERYLGGDDLDTSAIRRVSNFDKAVKFSEASFTWDPDLE-ATIQD 652
Query: 63 INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATV 122
+NLDI G LVA+VG G GK+SL+SAMLGE+ V I+G+ AYVPQ SWI N T+
Sbjct: 653 VNLDIKPGQLVAVVGTVGSGKSSLVSAMLGEMENV-HGHITIQGSTAYVPQQSWIQNGTI 711
Query: 123 RDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 182
+DNILFGS + +Y++ + +L DL++LPGGD+ EIGE+G+N+SGGQKQRVS+ARA
Sbjct: 712 KDNILFGSEYNEKKYQQVLKACALLPDLEILPGGDMAEIGEKGINLSGGQKQRVSLARAA 771
Query: 183 YSNSDVFIFDDPLSALDAHVGRQVFDRCI--RGELSGKTRVLVTNQLHFLSQVDRIILVH 240
Y ++D++I DDPLSA+DAHVG+ +F++ + G L+GKTR+ VT+ +HFL QVD I+++
Sbjct: 772 YQDADIYILDDPLSAVDAHVGKHIFNKVVGPNGLLAGKTRIFVTHGIHFLPQVDEIVVLG 831
Query: 241 EGMVKEEGTFEDLSNNGELFQK----LMENAGKMEEYV-------EEKEDG-----ETVD 284
+G + E+G++ DL + +F + M+++G E E+ +DG E +
Sbjct: 832 KGTILEKGSYRDLLDKKGVFARNWKTFMKHSGPEGEATVNNDSEAEDDDDGLIPTMEEIP 891
Query: 285 NKTSKPA---------------------ANGVDNDLPKEASDTRKTKEGK---SVLIKQE 320
+ A + N L + + K KE + LIK+E
Sbjct: 892 EDAASLAMRRENSLRRTLSRSSRSSSRRGKSLKNSLKIKNVNVLKEKEKEVEGQKLIKKE 951
Query: 321 ERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQS------- 373
ETG V F + +Y A+ G W +L ++L Y L + S+ WLS WT S
Sbjct: 952 FVETGKVKFSIYLKYLQAV-GWWSILFIILFYGLNNVAFIGSNLWLSAWTSDSDNLNGTN 1010
Query: 374 SLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFH 433
+ +H + ++ L Q + L ++ W I + A+K LH +L +ILRAPM FF
Sbjct: 1011 NSSSHRDMRIG-VFGALGLAQGICLLISTLWSIYACRNASKALHGQLLTNILRAPMRFFD 1069
Query: 434 TNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLL 493
T P GRI+NRF+ D+ +D + + +M + T V+I + + + I+PL +L
Sbjct: 1070 TTPTGRIVNRFSGDISTVDDLLPQTLRSWMMCFFGIAGTLVMICMATPVFAIIIIPLSIL 1129
Query: 494 FYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKN 553
+ + ++Y +T+R+++RLDS+T+SP+Y+ F E + GL IRA++ R N K +D N
Sbjct: 1130 YISVQVFYVATSRQLRRLDSVTKSPIYSHFSETVTGLPIIRAFEHQQRFLAWNEKQIDIN 1189
Query: 554 IRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNI 613
+ + +NRWLAIRLE+VG L+++ +A V+ + +G +LS ALNI
Sbjct: 1190 QKCVFSWITSNRWLAIRLELVGNLVVFCSALLLVIYRKTLT-----GDVVGFVLSNALNI 1244
Query: 614 TSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVL 673
T L ++R+ S AE ++ AVER+ YI + +EAP V + RPP WP G I+F + +
Sbjct: 1245 TQTLNWLVRMTSEAETNIVAVERISEYINVENEAPWVTD-KRPPADWPRHGEIQFNNYQV 1303
Query: 674 RYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK 733
RYRPEL VL G++ I +KVG+VGRTGAGKSS+ N LFRI+E G+I+IDG D+A
Sbjct: 1304 RYRPELDLVLKGITCNIKSGEKVGVVGRTGAGKSSLTNCLFRILESAGGQIIIDGIDVAS 1363
Query: 734 FGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLD 793
GL DLR+ L IIPQ P+LFSG++R NLDPF+++SD ++W ALE AHL+ + LGL
Sbjct: 1364 IGLHDLRERLTIIPQDPILFSGSLRMNLDPFNKYSDEEVWRALELAHLRSFVSGLQLGLL 1423
Query: 794 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCT 853
++V+E G+N S+GQRQLL L RA+LR+SKILVLDEATAAVD+ TD+LIQ TIR+EF CT
Sbjct: 1424 SEVTEGGDNLSIGQRQLLCLGRAVLRKSKILVLDEATAAVDLETDSLIQTTIRKEFSQCT 1483
Query: 854 MLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQY 909
++ IAHRL+TI+D D+I++LD+G+++EY +PEELLSN G SF M + G N +
Sbjct: 1484 VITIAHRLHTIMDSDKIMVLDNGKIVEYGSPEELLSNRG-SFYLMAKEAGIENVNH 1538
|
Mediates hepatobiliary excretion of numerous organic anions. Rattus norvegicus (taxid: 10116) |
| >sp|Q8ST87|ABCCA_DICDI ABC transporter C family member 10 OS=Dictyostelium discoideum GN=abcC10 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 723 bits (1867), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/923 (42%), Positives = 575/923 (62%), Gaps = 30/923 (3%)
Query: 9 VNANVSLKRMEEFLLAEEKI---LLPNPPLTSGLPAISIRNGYFSWDS-KAERPTLLNIN 64
+ ++ KR+ +FLL E + NP L +G + ++N +W+ K + L NIN
Sbjct: 390 IQMQIAGKRVTDFLLLPEMKDIQQIDNPSLPNG---VYMKNSTTTWNKLKEDSFGLKNIN 446
Query: 65 LDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRD 124
+ SL +VG G GK++L+ AMLGEL + D I+G++AYVPQ +WI NAT+++
Sbjct: 447 FEATGTSLTMVVGSVGSGKSTLVQAMLGELE-IIDGEIGIKGSIAYVPQQAWIINATLKE 505
Query: 125 NILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYS 184
NI+FG + RY+K ++V +L+ D++L P GD EIGERG+N+SGGQKQRVS+ARAVYS
Sbjct: 506 NIIFGKELDEERYQKVLEVCALKRDIELFPQGDSVEIGERGINLSGGQKQRVSIARAVYS 565
Query: 185 NSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMV 244
++DV+I DDPLSA+D+HVG+ +F +C +G LS KT +LV NQL++L D +++ G +
Sbjct: 566 DADVYILDDPLSAVDSHVGKHLFHKCFKGILSSKTVILVANQLNYLPFADNTVVLKSGEI 625
Query: 245 KEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEAS 304
E GT+ +L N+ F ++E G ++E V K+D D + V+ DL K+
Sbjct: 626 VERGTYYELINSKLEFSSILEKYG-VDENVISKKDDIDEDEDEDQDTIEKVEIDLNKDEK 684
Query: 305 DTRKTKEGKS--VLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTET-LRVS 361
K+K + LI +EE E G V+ KV +Y A GGL + ++ + +FL ET +
Sbjct: 685 SQPKSKSSNTDGTLISEEESEQGAVAGKVYWKYVTAGGGL--LFLVSMIFFLLETGSKTF 742
Query: 362 SSTWLSYWTDQSSLKTHGPLFYNT-----------IYSLLSFGQVLVTLANSYWLIISSL 410
S WLS+W +SS + L IY L V +++ ++ S+
Sbjct: 743 SDWWLSHWQTESSERMESILLGEEPTGLTDDQNLGIYIGLGMAAVFISVCKNFIYYEYSV 802
Query: 411 YAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLL 470
YA++ +H + +++L+ PM FF P+GRIINRF +DL ID +A ++ F+ + ++
Sbjct: 803 YASRAIHHELFNALLKKPMYFFDQTPIGRIINRFTRDLDGIDNLIATSISTFLTLMLTVI 862
Query: 471 STFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGL 530
+T +L+ I+ L + P+ ++F+ +Y+ T+R ++R+++ITRSP++ F E LNG+
Sbjct: 863 ATIILVSIIVPFLLIPLAPISIIFFFLQYFYRYTSRGLQRIEAITRSPIFNHFSETLNGV 922
Query: 531 STIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQN 590
+IRAYK IN K +D N L NRWL +RL+ + L+ + F +
Sbjct: 923 VSIRAYKKQQENILINQKRLDDNNNCYLTLQAMNRWLGLRLDFLANLITFFACIFITIDK 982
Query: 591 GSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLV 650
+ + +GL L YAL++T L A+ E +N+VER+ YI EAP +
Sbjct: 983 DTIS-----PANVGLALGYALSLTGNLNYAALQAADTETKMNSVERISQYIRGAVEAPQI 1037
Query: 651 IESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSML 710
I+ RP P WP +GSIKF+++V+RYR L PVL G++ I +K+GIVGRTGAGKSS++
Sbjct: 1038 IDDCRPSPDWPINGSIKFDNLVMRYREGLDPVLKGITCEIKAKEKIGIVGRTGAGKSSIV 1097
Query: 711 NTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDA 770
LFR++E G I IDG +IAKFGL DLR+ L IIPQ PVLFSGT+R NLDPF+E S+
Sbjct: 1098 LALFRLIEASEGSISIDGENIAKFGLKDLRRNLAIIPQDPVLFSGTLRENLDPFNERSEE 1157
Query: 771 DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 830
DL+ +E + ++ GLD++V+E GENFSVGQRQL+ L+RALLR+ KILVLDEAT
Sbjct: 1158 DLFSTIEDIQMSAVVKSLEGGLDSKVTENGENFSVGQRQLIVLARALLRKPKILVLDEAT 1217
Query: 831 AAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 890
A+VD ++D+LIQ TIR +F +CT+L IAHRLNTI+D DRI++LD+G++ E+D P LL N
Sbjct: 1218 ASVDGQSDSLIQATIRNKFSNCTILTIAHRLNTIMDSDRIMVLDAGKISEFDEPWTLLQN 1277
Query: 891 EGSSFSKMVQSTGAANAQYLRSL 913
+ + +V TG NA YLR L
Sbjct: 1278 QNGLLTWLVDETGPQNAIYLRKL 1300
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|Q92887|MRP2_HUMAN Canalicular multispecific organic anion transporter 1 OS=Homo sapiens GN=ABCC2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/956 (41%), Positives = 585/956 (61%), Gaps = 74/956 (7%)
Query: 8 VVNANVSLKRMEEFLLAEEKILLPNPPLTSGL---PAISIRNGYFSWDSKAERPTLLNIN 64
++ A+VS +R+E++L ++ L + A+ F+W+ +E T+ ++N
Sbjct: 603 MLQASVSTERLEKYLGGDD---LDTSAIRHDCNFDKAMQFSEASFTWEHDSE-ATVRDVN 658
Query: 65 LDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRD 124
LDI G LVA++G G GK+SLISAMLGE+ V I+GT AYVPQ SWI N T++D
Sbjct: 659 LDIMAGQLVAVIGPVGSGKSSLISAMLGEMENV-HGHITIKGTTAYVPQQSWIQNGTIKD 717
Query: 125 NILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYS 184
NILFG+ F RY++ ++ +L DL++LPGGD+ EIGE+G+N+SGGQKQR+S+ARA Y
Sbjct: 718 NILFGTEFNEKRYQQVLEACALLPDLEMLPGGDLAEIGEKGINLSGGQKQRISLARATYQ 777
Query: 185 NSDVFIFDDPLSALDAHVGRQVFDRCI--RGELSGKTRVLVTNQLHFLSQVDRIILVHEG 242
N D+++ DDPLSA+DAHVG+ +F++ + G L GKTR+LVT+ +HFL QVD I+++ G
Sbjct: 778 NLDIYLLDDPLSAVDAHVGKHIFNKVLGPNGLLKGKTRLLVTHSMHFLPQVDEIVVLGNG 837
Query: 243 MVKEEGTFEDL-SNNGELFQKL---MENAGKMEEYV------EEKEDGETVDNKTSKP-- 290
+ E+G++ L + GE + L + + G EE EE +D + + P
Sbjct: 838 TIVEKGSYSALLAKKGEFAKNLKTFLRHTGPEEEATVHDGSEEEDDDYGLISSVEEIPED 897
Query: 291 --------------------AANG-----VDNDLPKEASDTRKTKE----GKSVLIKQEE 321
+NG + N L ++ K E G+ LIK+E
Sbjct: 898 AASITMRRENSFRRTLSRSSRSNGRHLKSLRNSLKTRNVNSLKEDEELVKGQK-LIKKEF 956
Query: 322 RETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSL--KTHG 379
ETG V F + Y A+G L+ + ++L + + + S+ WLS WT S + T
Sbjct: 957 IETGKVKFSIYLEYLQAIG-LFSIFFIILAFVMNSVAFIGSNLWLSAWTSDSKIFNSTDY 1015
Query: 380 PLFYNT----IYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTN 435
P +Y L Q + +W ++A+ LH +L++ILRAPM FF T
Sbjct: 1016 PASQRDMRVGVYGALGLAQGIFVFIAHFWSAFGFVHASNILHKQLLNNILRAPMRFFDTT 1075
Query: 436 PLGRIINRFAKDLGDID----RNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLL 491
P GRI+NRFA D+ +D +++ ++ F+G ++ST V+I + + + ++PL
Sbjct: 1076 PTGRIVNRFAGDISTVDDTLPQSLRSWITCFLG----IISTLVMICMATPVFTIIVIPLG 1131
Query: 492 LLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMD 551
+++ + ++Y ST+R+++RLDS+TRSP+Y+ F E ++GL IRA++ R N +D
Sbjct: 1132 IIYVSVQMFYVSTSRQLRRLDSVTRSPIYSHFSETVSGLPVIRAFEHQQRFLKHNEVRID 1191
Query: 552 KNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYAL 611
N + + +NRWLAIRLE+VG L ++ +A V+ + T+G +LS AL
Sbjct: 1192 TNQKCVFSWITSNRWLAIRLELVGNLTVFFSALMMVIYRDTLS-----GDTVGFVLSNAL 1246
Query: 612 NITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDV 671
NIT L ++R+ S E ++ AVER+ Y ++ +EAP V + RPPP WPS G I+F +
Sbjct: 1247 NITQTLNWLVRMTSEIETNIVAVERITEYTKVENEAPWVTD-KRPPPDWPSKGKIQFNNY 1305
Query: 672 VLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI 731
+RYRPEL VL G++ I +K+G+VGRTGAGKSS+ N LFRI+E G+I+IDG DI
Sbjct: 1306 QVRYRPELDLVLRGITCDIGSMEKIGVVGRTGAGKSSLTNCLFRILEAAGGQIIIDGVDI 1365
Query: 732 AKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLG 791
A GL DLR+ L IIPQ P+LFSG++R NLDPF+ +SD ++W+ALE AHLK + LG
Sbjct: 1366 ASIGLHDLREKLTIIPQDPILFSGSLRMNLDPFNNYSDEEIWKALELAHLKSFVASLQLG 1425
Query: 792 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS 851
L +V+EAG N S+GQRQLL L RALLR+SKILVLDEATAAVD+ TD LIQ TI+ EF
Sbjct: 1426 LSHEVTEAGGNLSIGQRQLLCLGRALLRKSKILVLDEATAAVDLETDNLIQTTIQNEFAH 1485
Query: 852 CTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANA 907
CT++ IAHRL+TI+D D++++LD+G+++E +PEELL G F M + G N
Sbjct: 1486 CTVITIAHRLHTIMDSDKVMVLDNGKIIECGSPEELLQIPG-PFYFMAKEAGIENV 1540
|
Mediates hepatobiliary excretion of numerous organic anions. May function as a cellular cisplatin transporter. Homo sapiens (taxid: 9606) |
| >sp|Q54JR2|ABCC3_DICDI ABC transporter C family member 3 OS=Dictyostelium discoideum GN=abcC3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/922 (42%), Positives = 580/922 (62%), Gaps = 33/922 (3%)
Query: 9 VNANVSLKRMEEFLL---AEEKILLPNPPLTSGLPAISIRNGYFSW--DSKAERPTLLNI 63
+ ++ +R+ +FLL +E + +P + +G I IR+ +W + K E TL NI
Sbjct: 404 IQMKIAAQRVTDFLLLPEMKEISKIEDPSIENG---IYIRDATLTWNQEKKEESFTLKNI 460
Query: 64 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVR 123
N + +L IVG G GK+SLI AMLGE+ V D S ++G VAYVPQ +WI NAT++
Sbjct: 461 NFEAKGKTLTMIVGSVGSGKSSLIQAMLGEMD-VLDGSVAMKGNVAYVPQQAWIINATLK 519
Query: 124 DNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 183
DNILFGS ++ A+Y K ++V +L+ D++L P GD+ EIGERGVN+SGGQKQRVS+ARAVY
Sbjct: 520 DNILFGSPYDEAKYRKVLEVCALERDIELFPQGDLVEIGERGVNLSGGQKQRVSIARAVY 579
Query: 184 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGM 243
S+SDV+I DDPLSA+DAHVG+ +F RC +G L KT +L NQL++L +++ G
Sbjct: 580 SDSDVYILDDPLSAVDAHVGKHLFHRCFKGILKSKTVILAANQLNYLPFAHNTVVLKAGE 639
Query: 244 VKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEA 303
+ E G+++ L N + F L++ G E V E + D+K + + N V + K
Sbjct: 640 ISERGSYQQLINAQKEFSGLLQAYGVDESAVNE----DVEDDKEIEESDNIVVEEKTK-P 694
Query: 304 SDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTET-LRVSS 362
++ K + VL QEERE G V+ V +Y GG + ++ +FL +T R
Sbjct: 695 TEKPKLQNKDGVLTSQEEREEGAVAMWVYWKYITVGGGF--LFLMAFIFFLMDTGTRTFV 752
Query: 363 STWLSYWTDQSS---------LKTHG--PLFYNTIYSLLSFGQVLVTLANSYWLIISSLY 411
WLS+W ++S+ L+ G Y IY + +L++ ++ ++
Sbjct: 753 DWWLSHWQNESTKNALAVAQGLEPSGLTDTQYLGIYIGVGMTSILISAGRNFLFFEYTVR 812
Query: 412 AAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLS 471
A++ LH + +++LRAPM FF T PLGRIINRF +DL +D +A ++ F+ + +++
Sbjct: 813 ASRALHHQLFNALLRAPMSFFDTTPLGRIINRFTRDLDGVDNLMATSISQFLVFFTTVVA 872
Query: 472 TFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLS 531
T ++I I++ L + P+ ++FY +Y+ T+RE++RL++I+RSP+++ F E L G+
Sbjct: 873 TLIIISIITPFLLVPLAPICIIFYFLQFFYRYTSRELQRLEAISRSPIFSHFSETLGGVV 932
Query: 532 TIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNG 591
+IRAY+ + N +D N + L N+WL +RL+++ L+ + F +
Sbjct: 933 SIRAYRKKEENILTNQFRLDNNNKCYLTLQAMNQWLGLRLDLLANLVTFFACLFITIDRD 992
Query: 592 SAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVI 651
+ A+ +GL LSYAL++T L A+ E +N+VER+ +YI+ P EA ++
Sbjct: 993 TIS-----AANVGLSLSYALSLTGNLNRATLQAADTETKMNSVERITHYIKGPVEALQIV 1047
Query: 652 ESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLN 711
E +RP P WP G+I F+++V+RYR L PVL G+S I +K+GIVGRTGAGKSS++
Sbjct: 1048 EDHRPAPDWPPHGAITFDNLVMRYREGLDPVLKGISCEIKAKEKIGIVGRTGAGKSSIVL 1107
Query: 712 TLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDAD 771
LFR++E G ILIDG +IAKFGL DLR+ L IIPQ PVLFSGT+R N+DPF+E +D
Sbjct: 1108 ALFRLIEASEGAILIDGENIAKFGLKDLRRNLAIIPQDPVLFSGTLRENIDPFNEKTDDQ 1167
Query: 772 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 831
LW L+ L D + GLD++V+E G+N+SVGQRQLL L+RALLR KILVLDEATA
Sbjct: 1168 LWSVLKDIQLHDVAKSLEGGLDSKVTENGDNWSVGQRQLLCLARALLRDPKILVLDEATA 1227
Query: 832 AVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNE 891
+VD +D+LIQ TIRE+F +CT+L IAHRLNTI+D DRI++LD+G++ E+D P LL N
Sbjct: 1228 SVDGHSDSLIQATIREKFSNCTILTIAHRLNTIMDSDRIIVLDAGKISEFDEPWTLLQNP 1287
Query: 892 GSSFSKMVQSTGAANAQYLRSL 913
+ +V+ TG NA YLR L
Sbjct: 1288 AGLLNWLVEETGPQNAAYLRRL 1309
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|Q5F364|MRP1_CHICK Multidrug resistance-associated protein 1 OS=Gallus gallus GN=ABCC1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/937 (42%), Positives = 578/937 (61%), Gaps = 55/937 (5%)
Query: 8 VVNANVSLKRMEEFLLAEEKILLPNP----PLTSGLPAISIRNGYFSWDSKAERPTLLNI 63
+V A+VSLKR+ FL EE L P+ P+T+ +I ++N FSW SK + P+L +I
Sbjct: 605 IVEASVSLKRLRVFLSHEE--LDPDSIIRGPITNAEGSIVVKNATFSW-SKTDPPSLNSI 661
Query: 64 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVR 123
N +P GSL+A+VG G GK+SL+SA+LGE+ + V++G++AYVPQ +WI NAT+
Sbjct: 662 NFTVPEGSLIAVVGQVGCGKSSLLSALLGEMDK-KEGYVVVKGSIAYVPQQAWIQNATLE 720
Query: 124 DNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 183
DNI+FG +RY++ I+ +L DL++LP GD TEIGE+GVN+SGGQKQRVS+ARAVY
Sbjct: 721 DNIIFGREMNESRYKRVIEACALLPDLEILPMGDRTEIGEKGVNLSGGQKQRVSLARAVY 780
Query: 184 SNSDVFIFDDPLSALDAHVGRQVFDRCI--RGELSGKTRVLVTNQLHFLSQVDRIILVHE 241
N+D ++FDDPLSA+DAHVG+ +F++ I +G L KTRVLVT+ +++L Q+D I+++ +
Sbjct: 781 CNADTYLFDDPLSAVDAHVGKHIFEKVIGPKGILKNKTRVLVTHAVNYLPQMDTILVMTD 840
Query: 242 GMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGV------ 295
G + E G++++L F + + E+ +E D + K KP NGV
Sbjct: 841 GEISEMGSYQELLKQDGAFAEFLRTYANAEQSMES-SDASSPSGKEGKPVENGVLVNDAT 899
Query: 296 ----DNDLPKEASDTRKTKEGKS-------------------VLIKQEERETGVVSFKVL 332
L ++ +R+T GKS L + + +TG V V
Sbjct: 900 GKLMHRQLSNSSTYSRET--GKSQHQSSTAELQKPLAEKNSWKLTEADTAKTGRVKATVY 957
Query: 333 SRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTI----YS 388
Y A+G L++ + + + ++S+ WLS WTD + +G Y + Y
Sbjct: 958 WEYMKAIG-LYISFLSVFLFMCNHIASLASNYWLSLWTDDPVV--NGTQQYTNVRLGVYG 1014
Query: 389 LLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDL 448
L Q + S + I ++A++ LH +LH++LR+PM FF P G +++RF+K++
Sbjct: 1015 ALGISQGIAVFGYSMAVSIGGIFASRHLHLDLLHNVLRSPMSFFERTPSGNLVSRFSKEI 1074
Query: 449 GDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREV 508
ID + + MFMG ++ ++I + + ++ I PL L++ +Y +T+R++
Sbjct: 1075 DTIDSTIPPIIKMFMGSTFNVIGACIIILLATPIAAVVIPPLGLVYLLVQRFYVATSRQL 1134
Query: 509 KRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLA 568
KRL+S++RSPVY+ F E L G+S IRA++ R N +D+N + ++ ANRWLA
Sbjct: 1135 KRLESVSRSPVYSHFNETLLGVSVIRAFEEQKRFIKQNDMKVDENQKAYYPSIVANRWLA 1194
Query: 569 IRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAE 628
+RLE VG ++ A FAV+ A N+ + +GL +SY+L IT+ L ++R+ S E
Sbjct: 1195 VRLEFVGNCIVLFAALFAVI----ARNKLS-PGLIGLSVSYSLQITAYLNWLVRMTSDLE 1249
Query: 629 NSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSF 688
++ AVERV Y E+ EA IE P WP G ++F LRYR +L VL ++
Sbjct: 1250 TNIVAVERVKEYAEMEKEAEWSIEETAPASTWPQEGKVEFRGFGLRYREDLDLVLKNINI 1309
Query: 689 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQ 748
TI +KVGIVGRTGAGKSS+ LFRI E G I+IDG +IAK GL DLR + IIPQ
Sbjct: 1310 TINGGEKVGIVGRTGAGKSSLTLGLFRINEAAEGEIIIDGINIAKIGLHDLRFKITIIPQ 1369
Query: 749 SPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 808
P+LFSG++R NLDPF +HSD D+W +LE AHLK+ + L+ + SE GEN SVGQR
Sbjct: 1370 DPILFSGSLRMNLDPFDQHSDEDIWRSLELAHLKNFVSSLPDKLNHECSEGGENLSVGQR 1429
Query: 809 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCD 868
QL+ L+RALLR+SKILVLDEATAAVD+ TD LIQ TI+ +F+ CT+L IAHRLNTI+D
Sbjct: 1430 QLVCLARALLRKSKILVLDEATAAVDLETDNLIQSTIKSQFEECTVLTIAHRLNTIMDYT 1489
Query: 869 RILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAA 905
R+L+LD G V+E D+P+ LL +G +S M + +G A
Sbjct: 1490 RVLVLDRGEVVECDSPDNLLQAKGLFYS-MAKDSGLA 1525
|
Mediates ATP-dependent export of organic anions and drugs from the cytoplasm. Confers resistance to anticancer drugs. Hydrolyzes ATP with low efficiency. Gallus gallus (taxid: 9031) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1050 | ||||||
| 359483925 | 1616 | PREDICTED: ABC transporter C family memb | 0.993 | 0.645 | 0.876 | 0.0 | |
| 225443996 | 1623 | PREDICTED: ABC transporter C family memb | 0.993 | 0.642 | 0.876 | 0.0 | |
| 224116630 | 1617 | multidrug resistance protein ABC transpo | 0.993 | 0.645 | 0.862 | 0.0 | |
| 255571320 | 1569 | mgatp-energized glutathione s-conjugate | 0.994 | 0.665 | 0.861 | 0.0 | |
| 356555514 | 1620 | PREDICTED: ABC transporter C family memb | 0.989 | 0.641 | 0.838 | 0.0 | |
| 356549118 | 1620 | PREDICTED: ABC transporter C family memb | 0.989 | 0.641 | 0.835 | 0.0 | |
| 357447229 | 1712 | ABC transporter C family member [Medicag | 0.989 | 0.606 | 0.838 | 0.0 | |
| 171854661 | 1617 | putative multidrug resistance-associated | 0.987 | 0.641 | 0.821 | 0.0 | |
| 297823253 | 1623 | multidrug resistance-associated protein | 0.990 | 0.640 | 0.808 | 0.0 | |
| 15226801 | 1623 | ABC transporter C family member 2 [Arabi | 0.990 | 0.640 | 0.808 | 0.0 |
| >gi|359483925|ref|XP_003633036.1| PREDICTED: ABC transporter C family member 2 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1857 bits (4811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 916/1045 (87%), Positives = 986/1045 (94%), Gaps = 2/1045 (0%)
Query: 7 QVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLD 66
Q VNANVSLKR+EE LAEE+ILLPNPPL GLPAISI+NGYFSWDSKA+RPTL N+NLD
Sbjct: 573 QAVNANVSLKRLEELFLAEERILLPNPPLEPGLPAISIKNGYFSWDSKADRPTLSNVNLD 632
Query: 67 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNI 126
IPVG LVAIVGGTGEGKTSL+SAMLGELPP+SDASAVIRGTVAYVPQVSWIFNATVR NI
Sbjct: 633 IPVGGLVAIVGGTGEGKTSLVSAMLGELPPMSDASAVIRGTVAYVPQVSWIFNATVRGNI 692
Query: 127 LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 186
LFGS FE ARYEKAIDVT+LQHDLDLLPGGD+TEIGERGVNISGGQKQRVSMARAVYSNS
Sbjct: 693 LFGSPFEAARYEKAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNS 752
Query: 187 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKE 246
DV+IFDDPLSALDAHVGRQVFDRCI+GEL GKTRVLVTNQLHFLSQVDRIILVHEGMVKE
Sbjct: 753 DVYIFDDPLSALDAHVGRQVFDRCIKGELRGKTRVLVTNQLHFLSQVDRIILVHEGMVKE 812
Query: 247 EGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDT 306
EGTFE+LSNNG +FQKLMENAGKMEEYVEE E +D+KTSKP ANGV + LP +S+T
Sbjct: 813 EGTFEELSNNGMMFQKLMENAGKMEEYVEENGAEENIDDKTSKPVANGVVDKLPNNSSNT 872
Query: 307 RKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWL 366
K KEGKSVLIKQEERETGVVS+KVL RYK+ALGGLWVV+IL +CY LTETLRVSSSTWL
Sbjct: 873 SKPKEGKSVLIKQEERETGVVSWKVLVRYKNALGGLWVVMILFMCYILTETLRVSSSTWL 932
Query: 367 SYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILR 426
S WTDQ +THGP +YN IY++LSFGQVLVTLANSYWLI+SSLYAAKRLHDAML SILR
Sbjct: 933 SQWTDQGGSRTHGPGYYNLIYAMLSFGQVLVTLANSYWLIMSSLYAAKRLHDAMLGSILR 992
Query: 427 APMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWA 486
APM+FFHTNP+GRIINRFAKDLGDIDRNVAVFVNMF+GQ+SQLLSTFVLIGIVSTMSLWA
Sbjct: 993 APMLFFHTNPIGRIINRFAKDLGDIDRNVAVFVNMFLGQISQLLSTFVLIGIVSTMSLWA 1052
Query: 487 IMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADIN 546
IMPLL+LFY+AYLYYQ+TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADIN
Sbjct: 1053 IMPLLVLFYSAYLYYQNTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADIN 1112
Query: 547 GKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLL 606
G+SMD NIRYTLVNM +NRWLAIRLE +GGLMIWLTATFAV+QN AENQ+AFASTMGLL
Sbjct: 1113 GQSMDNNIRYTLVNMSSNRWLAIRLEALGGLMIWLTATFAVMQNERAENQQAFASTMGLL 1172
Query: 607 LSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSI 666
LSYALNITSLLT VLRLASLAENSLN+VERVG+YIELPSEAPLVIESNRPPP WPSSGSI
Sbjct: 1173 LSYALNITSLLTGVLRLASLAENSLNSVERVGSYIELPSEAPLVIESNRPPPAWPSSGSI 1232
Query: 667 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 726
KFEDVVLRYRPELPPVLHGLSFTI PSDKVGIVGRTGAGKSSMLN LFRIVELERGRILI
Sbjct: 1233 KFEDVVLRYRPELPPVLHGLSFTISPSDKVGIVGRTGAGKSSMLNALFRIVELERGRILI 1292
Query: 727 DGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIR 786
D DI+KFGL DLRK+LGIIPQSPVLFSGTVRFNLDPF+EH+DADLWEALERAHLKD IR
Sbjct: 1293 DDCDISKFGLRDLRKVLGIIPQSPVLFSGTVRFNLDPFNEHNDADLWEALERAHLKDVIR 1352
Query: 787 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR 846
RNSLGLDA+VSEAGENFSVGQRQLLSL+RALLRRSKILVLDEATAAVDVRTDALIQKTIR
Sbjct: 1353 RNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIR 1412
Query: 847 EEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAAN 906
EEFKSCTMLIIAHRLNTIIDCDR+LLLD+GRVLEYDTPEELLSN+ S+FSKMVQSTGAAN
Sbjct: 1413 EEFKSCTMLIIAHRLNTIIDCDRVLLLDAGRVLEYDTPEELLSNDRSAFSKMVQSTGAAN 1472
Query: 907 AQYLRSLVLGGEAENKL-REENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLE 965
A+YLRSLVLGGE ENKL RE+N+++DGQRRWLASSRW AAAQ+ALAVSLTSS NDLQ+LE
Sbjct: 1473 AEYLRSLVLGGEGENKLGREDNRRLDGQRRWLASSRWTAAAQFALAVSLTSSQNDLQQLE 1532
Query: 966 VEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLSVMSR 1025
+ED+N+ILKKTKDAV+TLQGVLEGKHDK IEE+LNQ++VS DGWWS+LYRMIEGL+VMSR
Sbjct: 1533 IEDENSILKKTKDAVITLQGVLEGKHDKVIEETLNQYQVSRDGWWSSLYRMIEGLAVMSR 1592
Query: 1026 LARNRLHQSDYDLEERSIDWDHVEM 1050
LARNRL QS+ E+RSIDWD +EM
Sbjct: 1593 LARNRL-QSENGFEDRSIDWDRIEM 1616
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225443996|ref|XP_002280819.1| PREDICTED: ABC transporter C family member 2 isoform 1 [Vitis vinifera] gi|297740795|emb|CBI30977.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1857 bits (4809), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 916/1045 (87%), Positives = 986/1045 (94%), Gaps = 2/1045 (0%)
Query: 7 QVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLD 66
Q VNANVSLKR+EE LAEE+ILLPNPPL GLPAISI+NGYFSWDSKA+RPTL N+NLD
Sbjct: 580 QAVNANVSLKRLEELFLAEERILLPNPPLEPGLPAISIKNGYFSWDSKADRPTLSNVNLD 639
Query: 67 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNI 126
IPVG LVAIVGGTGEGKTSL+SAMLGELPP+SDASAVIRGTVAYVPQVSWIFNATVR NI
Sbjct: 640 IPVGGLVAIVGGTGEGKTSLVSAMLGELPPMSDASAVIRGTVAYVPQVSWIFNATVRGNI 699
Query: 127 LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 186
LFGS FE ARYEKAIDVT+LQHDLDLLPGGD+TEIGERGVNISGGQKQRVSMARAVYSNS
Sbjct: 700 LFGSPFEAARYEKAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNS 759
Query: 187 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKE 246
DV+IFDDPLSALDAHVGRQVFDRCI+GEL GKTRVLVTNQLHFLSQVDRIILVHEGMVKE
Sbjct: 760 DVYIFDDPLSALDAHVGRQVFDRCIKGELRGKTRVLVTNQLHFLSQVDRIILVHEGMVKE 819
Query: 247 EGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDT 306
EGTFE+LSNNG +FQKLMENAGKMEEYVEE E +D+KTSKP ANGV + LP +S+T
Sbjct: 820 EGTFEELSNNGMMFQKLMENAGKMEEYVEENGAEENIDDKTSKPVANGVVDKLPNNSSNT 879
Query: 307 RKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWL 366
K KEGKSVLIKQEERETGVVS+KVL RYK+ALGGLWVV+IL +CY LTETLRVSSSTWL
Sbjct: 880 SKPKEGKSVLIKQEERETGVVSWKVLVRYKNALGGLWVVMILFMCYILTETLRVSSSTWL 939
Query: 367 SYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILR 426
S WTDQ +THGP +YN IY++LSFGQVLVTLANSYWLI+SSLYAAKRLHDAML SILR
Sbjct: 940 SQWTDQGGSRTHGPGYYNLIYAMLSFGQVLVTLANSYWLIMSSLYAAKRLHDAMLGSILR 999
Query: 427 APMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWA 486
APM+FFHTNP+GRIINRFAKDLGDIDRNVAVFVNMF+GQ+SQLLSTFVLIGIVSTMSLWA
Sbjct: 1000 APMLFFHTNPIGRIINRFAKDLGDIDRNVAVFVNMFLGQISQLLSTFVLIGIVSTMSLWA 1059
Query: 487 IMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADIN 546
IMPLL+LFY+AYLYYQ+TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADIN
Sbjct: 1060 IMPLLVLFYSAYLYYQNTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADIN 1119
Query: 547 GKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLL 606
G+SMD NIRYTLVNM +NRWLAIRLE +GGLMIWLTATFAV+QN AENQ+AFASTMGLL
Sbjct: 1120 GQSMDNNIRYTLVNMSSNRWLAIRLEALGGLMIWLTATFAVMQNERAENQQAFASTMGLL 1179
Query: 607 LSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSI 666
LSYALNITSLLT VLRLASLAENSLN+VERVG+YIELPSEAPLVIESNRPPP WPSSGSI
Sbjct: 1180 LSYALNITSLLTGVLRLASLAENSLNSVERVGSYIELPSEAPLVIESNRPPPAWPSSGSI 1239
Query: 667 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 726
KFEDVVLRYRPELPPVLHGLSFTI PSDKVGIVGRTGAGKSSMLN LFRIVELERGRILI
Sbjct: 1240 KFEDVVLRYRPELPPVLHGLSFTISPSDKVGIVGRTGAGKSSMLNALFRIVELERGRILI 1299
Query: 727 DGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIR 786
D DI+KFGL DLRK+LGIIPQSPVLFSGTVRFNLDPF+EH+DADLWEALERAHLKD IR
Sbjct: 1300 DDCDISKFGLRDLRKVLGIIPQSPVLFSGTVRFNLDPFNEHNDADLWEALERAHLKDVIR 1359
Query: 787 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR 846
RNSLGLDA+VSEAGENFSVGQRQLLSL+RALLRRSKILVLDEATAAVDVRTDALIQKTIR
Sbjct: 1360 RNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIR 1419
Query: 847 EEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAAN 906
EEFKSCTMLIIAHRLNTIIDCDR+LLLD+GRVLEYDTPEELLSN+ S+FSKMVQSTGAAN
Sbjct: 1420 EEFKSCTMLIIAHRLNTIIDCDRVLLLDAGRVLEYDTPEELLSNDRSAFSKMVQSTGAAN 1479
Query: 907 AQYLRSLVLGGEAENKL-REENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLE 965
A+YLRSLVLGGE ENKL RE+N+++DGQRRWLASSRW AAAQ+ALAVSLTSS NDLQ+LE
Sbjct: 1480 AEYLRSLVLGGEGENKLGREDNRRLDGQRRWLASSRWTAAAQFALAVSLTSSQNDLQQLE 1539
Query: 966 VEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLSVMSR 1025
+ED+N+ILKKTKDAV+TLQGVLEGKHDK IEE+LNQ++VS DGWWS+LYRMIEGL+VMSR
Sbjct: 1540 IEDENSILKKTKDAVITLQGVLEGKHDKVIEETLNQYQVSRDGWWSSLYRMIEGLAVMSR 1599
Query: 1026 LARNRLHQSDYDLEERSIDWDHVEM 1050
LARNRL QS+ E+RSIDWD +EM
Sbjct: 1600 LARNRL-QSENGFEDRSIDWDRIEM 1623
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224116630|ref|XP_002317351.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] gi|222860416|gb|EEE97963.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1804 bits (4672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 902/1046 (86%), Positives = 980/1046 (93%), Gaps = 3/1046 (0%)
Query: 7 QVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLD 66
QVVNANVSLKR+EE LAEE+ILLPNP L LPA+SI+NGYFSWDSKAERPTL NINLD
Sbjct: 573 QVVNANVSLKRLEELFLAEERILLPNPLLDPCLPAVSIKNGYFSWDSKAERPTLSNINLD 632
Query: 67 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNI 126
+P+GSLVA+VG TGEGKTSL+SAMLGELP SDAS VIRGTVAYVPQVSWIFNATVRDNI
Sbjct: 633 VPIGSLVAVVGSTGEGKTSLVSAMLGELPATSDASVVIRGTVAYVPQVSWIFNATVRDNI 692
Query: 127 LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 186
LFGS F+ ARYEKAIDVT+LQHDLDLLPGGD+TEIGERGVNISGGQKQRVSMARAVYSNS
Sbjct: 693 LFGSPFDSARYEKAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNS 752
Query: 187 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKE 246
DV+IFDDPLSALDA VGRQVFD+CI+GELS KTR+LVTNQLHFLSQVDRIILVHEGMVKE
Sbjct: 753 DVYIFDDPLSALDAQVGRQVFDKCIKGELSKKTRILVTNQLHFLSQVDRIILVHEGMVKE 812
Query: 247 EGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTS-KPAANGVDNDLPKEASD 305
EGTFEDLSNNG LFQKLMENAGKMEEY E++ + E VD+KTS K ANGV N+LPK S
Sbjct: 813 EGTFEDLSNNGMLFQKLMENAGKMEEYEEQENN-EIVDHKTSSKQVANGVMNNLPKNVSG 871
Query: 306 TRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTW 365
T+K KEGKSVLIKQEERETGVV+ KVL RYK+ALGG WVV++L +CY +TE LRVSSSTW
Sbjct: 872 TKKPKEGKSVLIKQEERETGVVNLKVLIRYKNALGGAWVVMVLFMCYLMTEVLRVSSSTW 931
Query: 366 LSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSIL 425
LS WT+Q + K HGPL+YN IYS LS GQV VTL NSYWLI SSLYAAKRLHDAML+SIL
Sbjct: 932 LSNWTNQGTSKRHGPLYYNLIYSFLSIGQVSVTLLNSYWLITSSLYAAKRLHDAMLNSIL 991
Query: 426 RAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLW 485
RAPMVFFHTNPLGRIINRFAKDLGDIDRNVA+FVNMFMGQ+SQLLSTFVLIGIVSTMSLW
Sbjct: 992 RAPMVFFHTNPLGRIINRFAKDLGDIDRNVAIFVNMFMGQISQLLSTFVLIGIVSTMSLW 1051
Query: 486 AIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADI 545
AIMPLL+LFY AYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMA I
Sbjct: 1052 AIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMASI 1111
Query: 546 NGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGL 605
NGKSMD N+RYTLVNMGANRWLAIRLE +GG+MIW TATFAV+QNG A+NQ+AFASTMGL
Sbjct: 1112 NGKSMDNNVRYTLVNMGANRWLAIRLETLGGIMIWFTATFAVMQNGRADNQQAFASTMGL 1171
Query: 606 LLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGS 665
LLSYALNITSLLTAVLRLASLAENSLN+VERVG YIELPSEAPLVIESNRPPPGWPSSG+
Sbjct: 1172 LLSYALNITSLLTAVLRLASLAENSLNSVERVGTYIELPSEAPLVIESNRPPPGWPSSGA 1231
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
IKFEDVVLRYRPELPPVLHGLSFTI PSDKVGIVGRTGAGKSSMLN LFRIVELERGRIL
Sbjct: 1232 IKFEDVVLRYRPELPPVLHGLSFTIFPSDKVGIVGRTGAGKSSMLNALFRIVELERGRIL 1291
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 785
ID DI+KFGLMDLRK+LGIIPQ+PVLFSGTVRFNLDPFSEH+DADLWEALERAHLKD I
Sbjct: 1292 IDDCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFSEHNDADLWEALERAHLKDVI 1351
Query: 786 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 845
RRNSLGLD++V+EAG+NFSVGQRQLLSL+RALLRRSKILVLDEATAAVDVRTDALIQKTI
Sbjct: 1352 RRNSLGLDSEVTEAGDNFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTI 1411
Query: 846 REEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAA 905
REEF+SCTMLIIAHRLNTIIDCDR++LLDSGRVLEYDTPEELLSNE S+FSKMVQSTGAA
Sbjct: 1412 REEFRSCTMLIIAHRLNTIIDCDRVILLDSGRVLEYDTPEELLSNENSAFSKMVQSTGAA 1471
Query: 906 NAQYLRSLVLGGEAENKL-REENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRL 964
NAQYLRSLV+GGE E++L REENKQ+DG RRWLASSRWAAAAQ+ALAVSLTSS NDLQ+L
Sbjct: 1472 NAQYLRSLVMGGERESRLGREENKQLDGPRRWLASSRWAAAAQFALAVSLTSSQNDLQQL 1531
Query: 965 EVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLSVMS 1024
E+ED+N++LKKTKDAVVTLQ VLEGKHDK I+ESLNQ+++S DGWWSALY+M+EGL++MS
Sbjct: 1532 EIEDENSVLKKTKDAVVTLQRVLEGKHDKVIDESLNQYQISRDGWWSALYKMVEGLAMMS 1591
Query: 1025 RLARNRLHQSDYDLEERSIDWDHVEM 1050
RL R+RLHQSDY LE+++IDW+HVEM
Sbjct: 1592 RLGRHRLHQSDYGLEDKTIDWNHVEM 1617
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255571320|ref|XP_002526609.1| mgatp-energized glutathione s-conjugate pump, putative [Ricinus communis] gi|223534049|gb|EEF35768.1| mgatp-energized glutathione s-conjugate pump, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1795 bits (4648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 902/1047 (86%), Positives = 982/1047 (93%), Gaps = 3/1047 (0%)
Query: 7 QVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLD 66
Q VNANVSLKR+EE LLAEE+ILLPNPPL PAISI+NGYFSWDSKAE PTL NIN+D
Sbjct: 523 QAVNANVSLKRLEELLLAEERILLPNPPLDPVQPAISIKNGYFSWDSKAEMPTLSNINVD 582
Query: 67 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA-SAVIRGTVAYVPQVSWIFNATVRDN 125
IP GSLVAIVG TGEGKTSLISAMLGELP +SD SAVIRGTVAYVPQVSWIFNATVRDN
Sbjct: 583 IPTGSLVAIVGSTGEGKTSLISAMLGELPAMSDTTSAVIRGTVAYVPQVSWIFNATVRDN 642
Query: 126 ILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 185
ILFGS F+ RYEKAIDVTSLQHDL+LLPGGD+TEIGERGVNISGGQKQRVSMARAVYSN
Sbjct: 643 ILFGSTFDSTRYEKAIDVTSLQHDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSN 702
Query: 186 SDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVK 245
SDV+IFDDPLSALDAHV RQVFD+CI+GEL KTRVLVTNQLHFLSQVDRIILVHEGMVK
Sbjct: 703 SDVYIFDDPLSALDAHVARQVFDKCIKGELGRKTRVLVTNQLHFLSQVDRIILVHEGMVK 762
Query: 246 EEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTS-KPAANGVDNDLPKEAS 304
EEGTFE+LSNNG +FQKLMENAGKMEEYVEEKE+GET D KTS KP ANGV ND K +
Sbjct: 763 EEGTFEELSNNGMMFQKLMENAGKMEEYVEEKENGETEDQKTSSKPVANGVANDFSKNVN 822
Query: 305 DTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSST 364
+T+ KEGKSVLIK+EERETGVVS++VL RYK+ALGG WVV+IL +CY LTE LRVSSST
Sbjct: 823 ETKNRKEGKSVLIKKEERETGVVSWRVLMRYKNALGGAWVVMILFMCYILTEVLRVSSST 882
Query: 365 WLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSI 424
WLS WTD+ + K+HGPL+YN +YS+LS GQV+VTL NSYWLIISSLYAA+RLHDAML+SI
Sbjct: 883 WLSNWTDRGTTKSHGPLYYNLVYSILSVGQVMVTLLNSYWLIISSLYAARRLHDAMLNSI 942
Query: 425 LRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSL 484
LRAPMVFFHTNPLGRIINRFAKDLGDIDR+VA+FVNMF+GQVSQLLSTF+LIGIVSTMSL
Sbjct: 943 LRAPMVFFHTNPLGRIINRFAKDLGDIDRSVAIFVNMFLGQVSQLLSTFILIGIVSTMSL 1002
Query: 485 WAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAD 544
W+IMPLL+LFY AYLYYQSTAREVKR+DSI+RSPVYAQFGEALNGLSTIRAYKAYDRMAD
Sbjct: 1003 WSIMPLLVLFYGAYLYYQSTAREVKRMDSISRSPVYAQFGEALNGLSTIRAYKAYDRMAD 1062
Query: 545 INGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMG 604
ING+SMD NIR+TLVNM ANRWLAIRLE +GG+MIWLTATFAV+QNG AENQ+AFASTMG
Sbjct: 1063 INGRSMDNNIRFTLVNMSANRWLAIRLETLGGIMIWLTATFAVMQNGRAENQQAFASTMG 1122
Query: 605 LLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSG 664
LLLSYALNIT LLT VLRLASLAENSLNAVERVG YI+LPSEAP VIE NRPPPGWPSSG
Sbjct: 1123 LLLSYALNITGLLTGVLRLASLAENSLNAVERVGTYIDLPSEAPPVIEGNRPPPGWPSSG 1182
Query: 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 724
SIKFEDVVLRYRPELPPVLHGLSFT+ PSDKVGIVGRTGAGKSSMLN LFRIVELERGRI
Sbjct: 1183 SIKFEDVVLRYRPELPPVLHGLSFTVSPSDKVGIVGRTGAGKSSMLNALFRIVELERGRI 1242
Query: 725 LIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDA 784
LIDG+DIAKFGLMDLRK+LGIIPQSPVLFSGTVRFNLDPF+EH+DADLWEALERAHLKD
Sbjct: 1243 LIDGYDIAKFGLMDLRKVLGIIPQSPVLFSGTVRFNLDPFNEHNDADLWEALERAHLKDV 1302
Query: 785 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 844
IRRNSLGL+A+VSEAGENFSVGQRQLLSL+RALLRRSKILVLDEATAAVDVRTDALIQKT
Sbjct: 1303 IRRNSLGLNAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKT 1362
Query: 845 IREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGA 904
IREEF+SCTMLIIAHRLNTIIDCDRILLLDSG VLEYDTPEELLSNEGS+FSKMVQSTGA
Sbjct: 1363 IREEFRSCTMLIIAHRLNTIIDCDRILLLDSGEVLEYDTPEELLSNEGSAFSKMVQSTGA 1422
Query: 905 ANAQYLRSLVLGGEAENKL-REENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQR 963
ANAQYLR LVLGGE E++ REENK++DGQR+W+ASSRWAAAAQ+ALAVSLTSSHNDLQR
Sbjct: 1423 ANAQYLRGLVLGGEGESRFGREENKRLDGQRKWMASSRWAAAAQFALAVSLTSSHNDLQR 1482
Query: 964 LEVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLSVM 1023
LE++D+N+IL+KTKDAV+TLQGVLEGKHDK IEESLNQH++S DGWWSALY+M+EGL++M
Sbjct: 1483 LEIDDENSILEKTKDAVITLQGVLEGKHDKVIEESLNQHQISKDGWWSALYKMVEGLAMM 1542
Query: 1024 SRLARNRLHQSDYDLEERSIDWDHVEM 1050
SRL RNRLHQSDY ++RSI+WD+VEM
Sbjct: 1543 SRLGRNRLHQSDYGFDDRSINWDNVEM 1569
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555514|ref|XP_003546076.1| PREDICTED: ABC transporter C family member 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1754 bits (4544), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 877/1046 (83%), Positives = 961/1046 (91%), Gaps = 7/1046 (0%)
Query: 7 QVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLD 66
QVVNANVSLKR+E+ LLAEE++LLPNPP+ GLPAISI+NGYFSWD+KAER +L NINLD
Sbjct: 580 QVVNANVSLKRLEDLLLAEERVLLPNPPIEPGLPAISIKNGYFSWDAKAERASLSNINLD 639
Query: 67 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNI 126
IPVG LVA+VG TGEGKTSL+SAMLGELPP++D+S V+RGTVAYVPQVSWIFNATVRDNI
Sbjct: 640 IPVGCLVAVVGSTGEGKTSLVSAMLGELPPMADSSVVLRGTVAYVPQVSWIFNATVRDNI 699
Query: 127 LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 186
LFGS F+PARY++AI+VT LQHDL+LLPGGD+TEIGERGVNISGGQKQRVSMARAVYSNS
Sbjct: 700 LFGSVFDPARYQRAINVTELQHDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNS 759
Query: 187 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKE 246
DV+IFDDPLSALDAHV RQVFD+CI+G+L GKTRVLVTNQLHFLSQV+RIILVHEGMVKE
Sbjct: 760 DVYIFDDPLSALDAHVARQVFDKCIKGDLRGKTRVLVTNQLHFLSQVNRIILVHEGMVKE 819
Query: 247 EGTFEDLSNNGELFQKLMENAGKMEEYVEE-KEDGETVDNK-TSKPAANGVDNDLPKEAS 304
EGTFE+LSN+G LFQKLMENAGKMEEY EE K D ET D K +SKP ANG ND K S
Sbjct: 820 EGTFEELSNHGPLFQKLMENAGKMEEYEEEEKVDTETTDQKPSSKPVANGAINDHAKSGS 879
Query: 305 DTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSST 364
K KEGKSVLIKQEER TGVVS VL+RYK ALGG WVV +L CY TETLR+SSST
Sbjct: 880 ---KPKEGKSVLIKQEERATGVVSLNVLTRYKSALGGFWVVFVLFACYVSTETLRISSST 936
Query: 365 WLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSI 424
WLS+WTDQS+ + + P+FYN IY+ LSFGQVLVTL NSYWLIISSLYAA+RLH+AML SI
Sbjct: 937 WLSHWTDQSATEGYNPVFYNMIYAALSFGQVLVTLTNSYWLIISSLYAARRLHEAMLSSI 996
Query: 425 LRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSL 484
LRAPMVFF TNPLGR+INRFAKDLGDIDRNVA FVNMF+GQVSQLLSTF+LIGIVSTMSL
Sbjct: 997 LRAPMVFFQTNPLGRVINRFAKDLGDIDRNVAPFVNMFLGQVSQLLSTFILIGIVSTMSL 1056
Query: 485 WAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAD 544
WAI+PLL+LFY AYLYYQSTAREVKRLDSI+RSPVYAQFGEALNGLSTIRAYKAYDRMAD
Sbjct: 1057 WAILPLLVLFYVAYLYYQSTAREVKRLDSISRSPVYAQFGEALNGLSTIRAYKAYDRMAD 1116
Query: 545 INGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMG 604
INGKSMD NIR+TLVNM NRWLAIRLE +GGLMIWLTATFAV+QNG AENQ+ FASTMG
Sbjct: 1117 INGKSMDNNIRFTLVNMSGNRWLAIRLETLGGLMIWLTATFAVMQNGRAENQQEFASTMG 1176
Query: 605 LLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSG 664
LLLSYALNITSLLT VLRLASLAENSLNAVER+G YI+LPSEAP VI++NRPPPGWPS G
Sbjct: 1177 LLLSYALNITSLLTGVLRLASLAENSLNAVERIGTYIDLPSEAPSVIDNNRPPPGWPSLG 1236
Query: 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 724
SI+FEDVVLRYRPELPPVLHGLSFTI PSDKVGIVGRTGAGKSSMLN LFRIVELE+GRI
Sbjct: 1237 SIRFEDVVLRYRPELPPVLHGLSFTIFPSDKVGIVGRTGAGKSSMLNALFRIVELEQGRI 1296
Query: 725 LIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDA 784
LID +D+AKFGL DLRK+LGIIPQSPVLFSGTVRFNLDPF+EH+DADLWEALERAHLKD
Sbjct: 1297 LIDDYDVAKFGLADLRKVLGIIPQSPVLFSGTVRFNLDPFNEHNDADLWEALERAHLKDV 1356
Query: 785 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 844
IRRNSLGLDA+VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT
Sbjct: 1357 IRRNSLGLDAEVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 1416
Query: 845 IREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGA 904
IREEFKSCTMLIIAHRLNTIIDCDRILLLD G+VLEYDTPEELLSNEGS+FSKMVQSTGA
Sbjct: 1417 IREEFKSCTMLIIAHRLNTIIDCDRILLLDGGKVLEYDTPEELLSNEGSAFSKMVQSTGA 1476
Query: 905 ANAQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRL 964
AN+QYLRSL LGG+ REENK +D +R+WLASSRWAAAAQ+ALAVSLTSSHNDLQRL
Sbjct: 1477 ANSQYLRSLALGGDKSE--REENKHLDARRKWLASSRWAAAAQFALAVSLTSSHNDLQRL 1534
Query: 965 EVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLSVMS 1024
EVED+N+ILKKTKDA++TLQGVLE KHDKEIEESL Q ++S DGWWS+LY+MIEGL++MS
Sbjct: 1535 EVEDENSILKKTKDALITLQGVLERKHDKEIEESLEQRQISPDGWWSSLYKMIEGLAIMS 1594
Query: 1025 RLARNRLHQSDYDLEERSIDWDHVEM 1050
RL NR HQSD+ E+RSI++D V+M
Sbjct: 1595 RLTVNRFHQSDFGFEDRSINFDQVDM 1620
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549118|ref|XP_003542944.1| PREDICTED: ABC transporter C family member 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1740 bits (4507), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 874/1046 (83%), Positives = 960/1046 (91%), Gaps = 7/1046 (0%)
Query: 7 QVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLD 66
QVVNANVSLKR+E+ LLAEE+ILL NPPL GLPAISI+NGYFSWD+KAER TL NINLD
Sbjct: 580 QVVNANVSLKRLEDLLLAEERILLSNPPLEPGLPAISIKNGYFSWDTKAERATLSNINLD 639
Query: 67 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNI 126
IPVG LVA+VG TGEGKTSL+SAMLGELPP++D++ V+RGTVAYVPQVSWIFNATVRDN+
Sbjct: 640 IPVGCLVAVVGSTGEGKTSLVSAMLGELPPMADSTVVLRGTVAYVPQVSWIFNATVRDNV 699
Query: 127 LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 186
LFGS F+P RYE+AI+VT LQHDL+LLPGGD TEIGERGVNISGGQKQRVSMARAVYSNS
Sbjct: 700 LFGSVFDPTRYERAINVTELQHDLELLPGGDHTEIGERGVNISGGQKQRVSMARAVYSNS 759
Query: 187 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKE 246
DV+IFDDPLSALDAHV RQVFD+CI+G+L KTRVLVTNQLHFLSQVDRIILVHEGMVKE
Sbjct: 760 DVYIFDDPLSALDAHVARQVFDKCIKGDLREKTRVLVTNQLHFLSQVDRIILVHEGMVKE 819
Query: 247 EGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNK--TSKPAANGVDNDLPKEAS 304
EGTFE+LSN+G LFQKLMENAGKMEEY EE++ ++ +S+P ANG ND K S
Sbjct: 820 EGTFEELSNHGLLFQKLMENAGKMEEYEEEEKVVTETTDQKPSSEPVANGSVNDHAKSGS 879
Query: 305 DTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSST 364
K KEGKSVLIKQEERETGVVS+ VL RYK+ALGG WVV +L CY TETLR+SSST
Sbjct: 880 ---KPKEGKSVLIKQEERETGVVSWNVLLRYKNALGGFWVVFVLFACYVSTETLRISSST 936
Query: 365 WLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSI 424
WLS+WTDQS+ K + P FYN IY+ LSFGQVLVTL NSYWLIISSLYAA+RLH+AML SI
Sbjct: 937 WLSHWTDQSATKGYNPAFYNMIYAALSFGQVLVTLTNSYWLIISSLYAARRLHEAMLSSI 996
Query: 425 LRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSL 484
LRAPMVFF TNPLGR+INRFAKDLGDIDRNVA FVNMF+GQVSQLLSTF+LIGIVSTMSL
Sbjct: 997 LRAPMVFFQTNPLGRVINRFAKDLGDIDRNVAPFVNMFLGQVSQLLSTFILIGIVSTMSL 1056
Query: 485 WAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAD 544
WAI+PLL+LFY AYLYYQSTAREVKRLDSI+RSPVYAQFGEALNGLSTIRAYKAYDRMAD
Sbjct: 1057 WAILPLLVLFYVAYLYYQSTAREVKRLDSISRSPVYAQFGEALNGLSTIRAYKAYDRMAD 1116
Query: 545 INGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMG 604
INGKSMD NIR+TLVN+ NRWLAIRLE +GGLMIWLTATFAV+QNG AENQ+ FASTMG
Sbjct: 1117 INGKSMDNNIRFTLVNISGNRWLAIRLETLGGLMIWLTATFAVMQNGRAENQQEFASTMG 1176
Query: 605 LLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSG 664
LLLSYALNITSLLT VLRLASLAENSLNAVER+G YI+LPSEAP +I+ NRPPPGWPSSG
Sbjct: 1177 LLLSYALNITSLLTGVLRLASLAENSLNAVERIGTYIDLPSEAPSIIDDNRPPPGWPSSG 1236
Query: 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 724
SI+FEDVVLRYR ELPPVLHGLSFTI PSDKVGIVGRTGAGKSSMLN LFRIVELERGRI
Sbjct: 1237 SIRFEDVVLRYRAELPPVLHGLSFTIFPSDKVGIVGRTGAGKSSMLNALFRIVELERGRI 1296
Query: 725 LIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDA 784
LID +D+AKFGL DLRK+LGIIPQSPVLFSGTVRFNLDPF+EH+DADLWEALERAHLKD
Sbjct: 1297 LIDDYDVAKFGLADLRKVLGIIPQSPVLFSGTVRFNLDPFNEHNDADLWEALERAHLKDV 1356
Query: 785 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 844
IRRNSLGLDA+VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT
Sbjct: 1357 IRRNSLGLDAEVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 1416
Query: 845 IREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGA 904
IREEFKSCTMLIIAHRLNTIIDCDRILLLD G+VLEYDTPEELLSNEGS+FSKMVQSTGA
Sbjct: 1417 IREEFKSCTMLIIAHRLNTIIDCDRILLLDGGKVLEYDTPEELLSNEGSAFSKMVQSTGA 1476
Query: 905 ANAQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRL 964
ANAQYLRSL LGG+ REEN+ +DG+R+WLASSRWAAAAQ+ALAVSLTSSHNDLQRL
Sbjct: 1477 ANAQYLRSLALGGDKSE--REENEHLDGKRKWLASSRWAAAAQFALAVSLTSSHNDLQRL 1534
Query: 965 EVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLSVMS 1024
EVED+N+ILKKTKDA++TLQGVLE K+DKEIEESLNQ +VS +GWWS+LY+MIEGL++MS
Sbjct: 1535 EVEDENSILKKTKDALITLQGVLERKYDKEIEESLNQRQVSPEGWWSSLYKMIEGLAMMS 1594
Query: 1025 RLARNRLHQSDYDLEERSIDWDHVEM 1050
RLA+NRLHQSD+ E+RSI++D V+M
Sbjct: 1595 RLAKNRLHQSDFGFEDRSINFDQVDM 1620
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357447229|ref|XP_003593890.1| ABC transporter C family member [Medicago truncatula] gi|355482938|gb|AES64141.1| ABC transporter C family member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1736 bits (4497), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 876/1045 (83%), Positives = 961/1045 (91%), Gaps = 6/1045 (0%)
Query: 7 QVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLD 66
QVVNANVSLKR+EE LLAEE+ILLPNPPL GLPAISIRNGYFSWD+KAER TL NINLD
Sbjct: 673 QVVNANVSLKRLEELLLAEERILLPNPPLEPGLPAISIRNGYFSWDAKAERATLSNINLD 732
Query: 67 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNI 126
IPVGSLVA+VG TGEGKTSL+SAMLGELPP++D++ V+RGTVAYVPQVSWIFNATVRDN+
Sbjct: 733 IPVGSLVAVVGSTGEGKTSLVSAMLGELPPIADSTVVLRGTVAYVPQVSWIFNATVRDNV 792
Query: 127 LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 186
LFGS F+P RYE+AI+VT L+HDL+LLPGGD+TEIGERGVNISGGQKQRVSMARAVYSNS
Sbjct: 793 LFGSVFDPIRYERAINVTELRHDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNS 852
Query: 187 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKE 246
DV +FDDPLSALDAHV RQVFD+CI+GEL GKTRVLVTNQLHFLSQVDRIILVHEGMVKE
Sbjct: 853 DVLVFDDPLSALDAHVARQVFDKCIKGELRGKTRVLVTNQLHFLSQVDRIILVHEGMVKE 912
Query: 247 EGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTS-KPAANGVDNDLPKEASD 305
EGTFE+LS+ G LFQKLMENAGKMEEY EEK D E D K+S KP NG ND K S
Sbjct: 913 EGTFEELSSQGLLFQKLMENAGKMEEYEEEKVDIEATDQKSSSKPVVNGAVNDNAKSES- 971
Query: 306 TRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTW 365
K K GKS+LIKQEERETGVVS VL RYK+ALGG WV+L+L CYF TE LRVSSSTW
Sbjct: 972 --KPKGGKSILIKQEERETGVVSLNVLIRYKNALGGTWVILVLFACYFSTEALRVSSSTW 1029
Query: 366 LSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSIL 425
LS+WTDQS++ + P FYN +Y+ LSFGQV V+L NSYWLIISSLYAA+RLH+AMLHSIL
Sbjct: 1030 LSHWTDQSAVDGYNPAFYNLVYAALSFGQVFVSLINSYWLIISSLYAARRLHEAMLHSIL 1089
Query: 426 RAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLW 485
RAPMVFFHTNPLGR+INRFAKDLGDIDRNVA FV+MF+GQ+SQLLSTF+LIGIVSTMSLW
Sbjct: 1090 RAPMVFFHTNPLGRVINRFAKDLGDIDRNVAPFVSMFLGQISQLLSTFILIGIVSTMSLW 1149
Query: 486 AIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADI 545
AIMPLL+LFY AYLYYQSTAREVKRLDSI+RSPVYAQFGEALNGLSTIRAYKAYDRMADI
Sbjct: 1150 AIMPLLVLFYGAYLYYQSTAREVKRLDSISRSPVYAQFGEALNGLSTIRAYKAYDRMADI 1209
Query: 546 NGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGL 605
NG+SMD NIRYTLVN+ ANRWLAIRLE +GGLMIW TATFAV+QNG AENQ+ FASTMGL
Sbjct: 1210 NGRSMDNNIRYTLVNISANRWLAIRLETLGGLMIWFTATFAVMQNGRAENQQEFASTMGL 1269
Query: 606 LLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGS 665
LLSYALNITSLLT VLRLASLAENSLN+VERVG YI+LPSEAP VI+ NRPPPGWPSSGS
Sbjct: 1270 LLSYALNITSLLTGVLRLASLAENSLNSVERVGTYIDLPSEAPSVIDDNRPPPGWPSSGS 1329
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
IKF++VVLRYRPELPPVLHGLSFTI PSDKVGIVGRTGAGKSSMLN LFRIVELE+GRIL
Sbjct: 1330 IKFDEVVLRYRPELPPVLHGLSFTIFPSDKVGIVGRTGAGKSSMLNALFRIVELEKGRIL 1389
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 785
ID DIAKFGL DLRK+LGIIPQSPVLFSGTVRFNLDPF+EH+DADLWEALERAHLKD I
Sbjct: 1390 IDDRDIAKFGLADLRKVLGIIPQSPVLFSGTVRFNLDPFTEHNDADLWEALERAHLKDVI 1449
Query: 786 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 845
RRNSLGLDA+VSEAGENFSVGQRQLLSL+RALLRRSKILVLDEATAAVDVRTDALIQKTI
Sbjct: 1450 RRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTI 1509
Query: 846 REEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAA 905
REEFKSCTMLIIAHRLNTIIDCDR+LLLD G+VLEY+TPEELLSNEGS+FSKMVQSTGAA
Sbjct: 1510 REEFKSCTMLIIAHRLNTIIDCDRVLLLDGGKVLEYNTPEELLSNEGSAFSKMVQSTGAA 1569
Query: 906 NAQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLE 965
NAQYLRSLV GG+ REEN+ +DGQR+WLASSRWAAAAQYALAVSLTSS NDLQRLE
Sbjct: 1570 NAQYLRSLVHGGDKTE--REENQHLDGQRKWLASSRWAAAAQYALAVSLTSSQNDLQRLE 1627
Query: 966 VEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLSVMSR 1025
VED+N+ILKKTKDA++TLQGVLE KHDKEIEESLNQ ++S++GWWS+LY+MIEGL++MSR
Sbjct: 1628 VEDENSILKKTKDALITLQGVLERKHDKEIEESLNQRQISSEGWWSSLYKMIEGLAMMSR 1687
Query: 1026 LARNRLHQSDYDLEERSIDWDHVEM 1050
LARNRLHQSD+ E+ SI++D ++M
Sbjct: 1688 LARNRLHQSDFGFEDTSINFDQIDM 1712
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|171854661|dbj|BAG16520.1| putative multidrug resistance-associated protein [Capsicum chinense] | Back alignment and taxonomy information |
|---|
Score = 1716 bits (4443), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 858/1045 (82%), Positives = 953/1045 (91%), Gaps = 8/1045 (0%)
Query: 7 QVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLD 66
QVVNANVSLKR+E+ LLAEE+ILLPNPPL GLPAISI+NG FSW+SKAE+PTL NINLD
Sbjct: 580 QVVNANVSLKRLEDLLLAEERILLPNPPLEPGLPAISIKNGCFSWESKAEKPTLSNINLD 639
Query: 67 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNI 126
IP+GSLVAIVGGTGEGKTSLISAMLGELP SD+ VIRGTVAYVPQVSWIFNATVR+NI
Sbjct: 640 IPIGSLVAIVGGTGEGKTSLISAMLGELPSFSDSVVVIRGTVAYVPQVSWIFNATVRENI 699
Query: 127 LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 186
LFGSA + ARY +AIDVT+L+HDL+LLPGGD+TEIGERGVNISGGQKQRVSMARAVYSNS
Sbjct: 700 LFGSAIDAARYNRAIDVTALRHDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNS 759
Query: 187 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKE 246
DV IFDDPLSALDA VGRQVF+RCIR EL GKTRVLVTNQLHFLSQVD+IILVH+GMVKE
Sbjct: 760 DVCIFDDPLSALDADVGRQVFERCIREELKGKTRVLVTNQLHFLSQVDKIILVHDGMVKE 819
Query: 247 EGTFEDLSNNGELFQKLMENAGKMEEYVEEKE-DGETVDNKTSKPAANGVDNDLPKEASD 305
EGTFE LSNNG LFQKLMENAGKMEEY EEKE DG ++K+SKP NG N + KE
Sbjct: 820 EGTFEYLSNNGVLFQKLMENAGKMEEYTEEKENDG---NDKSSKPVVNGEANGVAKEVG- 875
Query: 306 TRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTW 365
+ KEGKSVLIKQEERETGVVS+ VL RYK+ALGG WVV+IL +CYFL E LRV SSTW
Sbjct: 876 -KDKKEGKSVLIKQEERETGVVSWNVLMRYKNALGGSWVVIILFVCYFLIEALRVGSSTW 934
Query: 366 LSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSIL 425
LS+WTDQSS + FYN IYSLLS GQV+VTL NS+WLI SSLYAAK LHDAML SIL
Sbjct: 935 LSFWTDQSSSTRYSAGFYNLIYSLLSLGQVMVTLMNSFWLITSSLYAAKMLHDAMLGSIL 994
Query: 426 RAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLW 485
RAPMVFFHTNPLGRIINRFAKDLGDIDRNVA FV+MF+GQV QL+STFVLIGIVSTMSLW
Sbjct: 995 RAPMVFFHTNPLGRIINRFAKDLGDIDRNVAPFVSMFLGQVFQLISTFVLIGIVSTMSLW 1054
Query: 486 AIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADI 545
AIMPLL+LFY AYLYYQSTAREVKRLDSI+RSPVYAQFGEALNGL+TIRAYKAYDRMA+I
Sbjct: 1055 AIMPLLVLFYGAYLYYQSTAREVKRLDSISRSPVYAQFGEALNGLATIRAYKAYDRMANI 1114
Query: 546 NGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGL 605
NGKS+D NIR+TLVNM NRWLAIRLE VGG+MIWLTATFAVVQNG AENQ+AFASTMGL
Sbjct: 1115 NGKSVDNNIRFTLVNMSGNRWLAIRLETVGGVMIWLTATFAVVQNGRAENQQAFASTMGL 1174
Query: 606 LLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGS 665
LLSYALNITSLLTAVLRLASLAENSLNAVERVG YIELPSE P +IE +RPPPGWPS+GS
Sbjct: 1175 LLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIELPSEGPSIIEGSRPPPGWPSAGS 1234
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
I+FE+VVLRYRPELPPVLHG+SFTI PSDKVG+VGRTGAGKSSM N LFR+VE ERGRIL
Sbjct: 1235 IRFENVVLRYRPELPPVLHGISFTISPSDKVGVVGRTGAGKSSMFNALFRLVEPERGRIL 1294
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 785
ID D++KFGL DLRK+LGIIPQ+PVLFSGTVRFNLDPF+EH+DADLWE+LERAHLKD I
Sbjct: 1295 IDDCDVSKFGLTDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVI 1354
Query: 786 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 845
RRNSLGLDA+VSEAGENFSVGQRQLLSL+RALLRRSKILVLDEATAAVDVRTDALIQKTI
Sbjct: 1355 RRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTI 1414
Query: 846 REEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAA 905
REEFKSCTMLIIAHRLNTIIDCDRILLL+SG++LEYDTPE LL EGS+FS+MVQSTGAA
Sbjct: 1415 REEFKSCTMLIIAHRLNTIIDCDRILLLESGQLLEYDTPEVLLQKEGSAFSRMVQSTGAA 1474
Query: 906 NAQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLE 965
NAQYLRSLV GGE N + +KQ+DGQRRWLAS+RWAAAAQ+ALAV+LTSS NDL +LE
Sbjct: 1475 NAQYLRSLVFGGEEGNSI-ARDKQLDGQRRWLASTRWAAAAQFALAVTLTSSQNDLVQLE 1533
Query: 966 VEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLSVMSR 1025
+ED++NILKKTK+AV+TLQGVLEGKHDK+IEE+L+Q++VS D WWS+LY+MIEGL++MS+
Sbjct: 1534 IEDEDNILKKTKNAVITLQGVLEGKHDKDIEETLDQYQVSRDRWWSSLYKMIEGLAMMSK 1593
Query: 1026 LARNRLHQSDYDLEERSIDWDHVEM 1050
LARNRL Q++++ ++++I+WD EM
Sbjct: 1594 LARNRL-QAEFEFDDKTINWDRAEM 1617
|
Source: Capsicum chinense Species: Capsicum chinense Genus: Capsicum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297823253|ref|XP_002879509.1| multidrug resistance-associated protein 2 [Arabidopsis lyrata subsp. lyrata] gi|297325348|gb|EFH55768.1| multidrug resistance-associated protein 2 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1706 bits (4417), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 848/1049 (80%), Positives = 946/1049 (90%), Gaps = 9/1049 (0%)
Query: 7 QVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLD 66
QVVNANVSLKR+EE L EE+ILLPNPP+ G PAISIRNGYFSWDSK +RPTL NINLD
Sbjct: 579 QVVNANVSLKRLEEVLATEERILLPNPPIEPGEPAISIRNGYFSWDSKGDRPTLSNINLD 638
Query: 67 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNI 126
+P+GSLVA+VG TGEGKTSLISA+LGELP SDA +RG+VAYVPQVSWIFNATVR+NI
Sbjct: 639 VPLGSLVAVVGSTGEGKTSLISAILGELPATSDAMVTLRGSVAYVPQVSWIFNATVRENI 698
Query: 127 LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 186
LFGS F+ +YE+ IDVTSL+HDL+LLPGGD+TEIGERGVNISGGQKQRVSMARAVYS+S
Sbjct: 699 LFGSPFDREKYERVIDVTSLKHDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSDS 758
Query: 187 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKE 246
DV+IFDDPLSALDAHVG+QVF++CI+ EL+ KTRVLVTNQLHFLSQVDRI+LVHEG VKE
Sbjct: 759 DVYIFDDPLSALDAHVGQQVFEKCIKRELAQKTRVLVTNQLHFLSQVDRIVLVHEGTVKE 818
Query: 247 EGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDT 306
EGT+E+LSNNG LFQ+LMENAGK+EEY EE + E D +P ANG N L + SD
Sbjct: 819 EGTYEELSNNGPLFQRLMENAGKVEEYSEENGEAEA-DQAVVQPVANGNTNGLQMDGSDD 877
Query: 307 RKTKEG-----KSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVS 361
+K+KEG KSVLIKQEERETGVVS++VL RY+DALGG WVV++LLLCY LTE RV+
Sbjct: 878 KKSKEGNKKGGKSVLIKQEERETGVVSWRVLKRYQDALGGAWVVMMLLLCYVLTEVFRVT 937
Query: 362 SSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAML 421
SSTWLS WTD + K+HGPLFYN IY+LLSFGQVLVTL NSYWLI+SSLYAAK+LHD ML
Sbjct: 938 SSTWLSEWTDAGTPKSHGPLFYNLIYALLSFGQVLVTLTNSYWLIMSSLYAAKKLHDNML 997
Query: 422 HSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVST 481
HSILRAPM FFHTNPLGRIINRFAKDLGDIDR VAVFVNMFMGQVSQLLST VLIGIVST
Sbjct: 998 HSILRAPMSFFHTNPLGRIINRFAKDLGDIDRTVAVFVNMFMGQVSQLLSTVVLIGIVST 1057
Query: 482 MSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDR 541
+SLWAIMPLL+LFY AYLYYQ+TAREVKR+DSI+RSPVYAQFGEALNGLSTIRAYKAYDR
Sbjct: 1058 LSLWAIMPLLVLFYGAYLYYQNTAREVKRMDSISRSPVYAQFGEALNGLSTIRAYKAYDR 1117
Query: 542 MADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFAS 601
MADING+SMD NIR+TLVNMGANRWL IRLE +GGLMIWLTA+FAV+QNG AENQ+AFAS
Sbjct: 1118 MADINGRSMDNNIRFTLVNMGANRWLGIRLETLGGLMIWLTASFAVMQNGRAENQQAFAS 1177
Query: 602 TMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP 661
TMGLLLSYALNITSLLT VLRLASLAENSLNAVERVGNYIE+P EAPLVIE+NRPPPGWP
Sbjct: 1178 TMGLLLSYALNITSLLTGVLRLASLAENSLNAVERVGNYIEIPPEAPLVIENNRPPPGWP 1237
Query: 662 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 721
SSGSIKFEDVVLRYRP+LPPVLHG+SF I P+DKVGIVGRTGAGKSS+LN LFRIVE+E+
Sbjct: 1238 SSGSIKFEDVVLRYRPQLPPVLHGVSFFIHPTDKVGIVGRTGAGKSSLLNALFRIVEVEK 1297
Query: 722 GRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHL 781
GRILID D+ KFGLMDLRK+LGIIPQSPVLFSGTVRFNLDPF EH+DADLWE+LERAHL
Sbjct: 1298 GRILIDECDVGKFGLMDLRKVLGIIPQSPVLFSGTVRFNLDPFGEHNDADLWESLERAHL 1357
Query: 782 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 841
KD IRRN LGLDA+VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI
Sbjct: 1358 KDTIRRNPLGLDAEVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 1417
Query: 842 QKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 901
QKTIREEFKSCTMLIIAHRLNTIIDCD+IL+LDSGRV E+ +PE LLSNEGSSFSKMVQS
Sbjct: 1418 QKTIREEFKSCTMLIIAHRLNTIIDCDKILVLDSGRVQEFSSPENLLSNEGSSFSKMVQS 1477
Query: 902 TGAANAQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDL 961
TGAANA+YLRSLVL + + R++++ + GQR+WLASSRWAAAAQ+ALAVSLTSSHNDL
Sbjct: 1478 TGAANAEYLRSLVLDNK---RARDDSQHLQGQRKWLASSRWAAAAQFALAVSLTSSHNDL 1534
Query: 962 QRLEVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLS 1021
Q LE+ED ++ILK+T DAVVTL+ VLEGKHDKEI ESL + +S +GW S+LYRM+EGL+
Sbjct: 1535 QSLEIEDDSSILKRTNDAVVTLRSVLEGKHDKEIAESLEERNISKEGWLSSLYRMVEGLA 1594
Query: 1022 VMSRLARNRLHQSDYDLEERSIDWDHVEM 1050
VMSRLARNR+ Q DY+ E + DWD+VEM
Sbjct: 1595 VMSRLARNRMQQPDYNFEGNTFDWDNVEM 1623
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15226801|ref|NP_181013.1| ABC transporter C family member 2 [Arabidopsis thaliana] gi|334184682|ref|NP_001189675.1| ABC transporter C family member 2 [Arabidopsis thaliana] gi|90103509|sp|Q42093.2|AB2C_ARATH RecName: Full=ABC transporter C family member 2; Short=ABC transporter ABCC.2; Short=AtABCC2; AltName: Full=ATP-energized glutathione S-conjugate pump 2; AltName: Full=Glutathione S-conjugate-transporting ATPase 2; AltName: Full=Multidrug resistance-associated protein 2 gi|3132479|gb|AAC16268.1| ABC transporter (AtMRP2) [Arabidopsis thaliana] gi|330253911|gb|AEC09005.1| ABC transporter C family member 2 [Arabidopsis thaliana] gi|330253912|gb|AEC09006.1| ABC transporter C family member 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1706 bits (4417), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 848/1049 (80%), Positives = 944/1049 (89%), Gaps = 9/1049 (0%)
Query: 7 QVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLD 66
QVVNANVSLKR+EE L EE+ILLPNPP+ G PAISIRNGYFSWDSK +RPTL NINLD
Sbjct: 579 QVVNANVSLKRLEEVLATEERILLPNPPIEPGEPAISIRNGYFSWDSKGDRPTLSNINLD 638
Query: 67 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNI 126
+P+GSLVA+VG TGEGKTSLISA+LGELP SDA +RG+VAYVPQVSWIFNATVRDNI
Sbjct: 639 VPLGSLVAVVGSTGEGKTSLISAILGELPATSDAIVTLRGSVAYVPQVSWIFNATVRDNI 698
Query: 127 LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 186
LFGS F+ +YE+AIDVTSL+HDL+LLPGGD+TEIGERGVNISGGQKQRVSMARAVYSNS
Sbjct: 699 LFGSPFDREKYERAIDVTSLKHDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNS 758
Query: 187 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKE 246
DV+IFDDPLSALDAHVG+QVF++CI+ EL KTRVLVTNQLHFLSQVDRI+LVHEG VKE
Sbjct: 759 DVYIFDDPLSALDAHVGQQVFEKCIKRELGQKTRVLVTNQLHFLSQVDRIVLVHEGTVKE 818
Query: 247 EGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDT 306
EGT+E+LS+NG LFQ+LMENAGK+EEY EE + E D +P ANG N L + SD
Sbjct: 819 EGTYEELSSNGPLFQRLMENAGKVEEYSEENGEAEA-DQTAEQPVANGNTNGLQMDGSDD 877
Query: 307 RKTKEG-----KSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVS 361
+K+KEG KSVLIKQEERETGVVS++VL RY+DALGG WVV++LLLCY LTE RV+
Sbjct: 878 KKSKEGNKKGGKSVLIKQEERETGVVSWRVLKRYQDALGGAWVVMMLLLCYVLTEVFRVT 937
Query: 362 SSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAML 421
SSTWLS WTD + K+HGPLFYN IY+LLSFGQVLVTL NSYWLI+SSLYAAK+LHD ML
Sbjct: 938 SSTWLSEWTDAGTPKSHGPLFYNLIYALLSFGQVLVTLTNSYWLIMSSLYAAKKLHDNML 997
Query: 422 HSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVST 481
HSILRAPM FFHTNPLGRIINRFAKDLGDIDR VAVFVNMFMGQVSQLLST VLIGIVST
Sbjct: 998 HSILRAPMSFFHTNPLGRIINRFAKDLGDIDRTVAVFVNMFMGQVSQLLSTVVLIGIVST 1057
Query: 482 MSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDR 541
+SLWAIMPLL+LFY AYLYYQ+TAREVKR+DSI+RSPVYAQFGEALNGLSTIRAYKAYDR
Sbjct: 1058 LSLWAIMPLLVLFYGAYLYYQNTAREVKRMDSISRSPVYAQFGEALNGLSTIRAYKAYDR 1117
Query: 542 MADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFAS 601
MADING+SMD NIR+TLVNMGANRWL IRLE +GGLMIWLTA+FAV+QNG AENQ+AFAS
Sbjct: 1118 MADINGRSMDNNIRFTLVNMGANRWLGIRLETLGGLMIWLTASFAVMQNGRAENQQAFAS 1177
Query: 602 TMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP 661
TMGLLLSYALNITSLLT VLRLASLAENSLNAVERVGNYIE+P EAP VIE+NRPPPGWP
Sbjct: 1178 TMGLLLSYALNITSLLTGVLRLASLAENSLNAVERVGNYIEIPPEAPPVIENNRPPPGWP 1237
Query: 662 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 721
SSGSIKFEDVVLRYRP+LPPVLHG+SF I P+DKVGIVGRTGAGKSS+LN LFRIVE+E+
Sbjct: 1238 SSGSIKFEDVVLRYRPQLPPVLHGVSFFIHPTDKVGIVGRTGAGKSSLLNALFRIVEVEK 1297
Query: 722 GRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHL 781
GRILID D+ KFGLMDLRK+LGIIPQSPVLFSGTVRFNLDPF EH+DADLWE+LERAHL
Sbjct: 1298 GRILIDDCDVGKFGLMDLRKVLGIIPQSPVLFSGTVRFNLDPFGEHNDADLWESLERAHL 1357
Query: 782 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 841
KD IRRN LGLDA+VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI
Sbjct: 1358 KDTIRRNPLGLDAEVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 1417
Query: 842 QKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 901
QKTIREEFKSCTMLIIAHRLNTIIDCD+IL+LDSGRV E+ +PE LLSNEGSSFSKMVQS
Sbjct: 1418 QKTIREEFKSCTMLIIAHRLNTIIDCDKILVLDSGRVQEFSSPENLLSNEGSSFSKMVQS 1477
Query: 902 TGAANAQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDL 961
TGAANA+YLRSLVL + + ++++ + GQR+WLASSRWAAAAQ+ALA SLTSSHNDL
Sbjct: 1478 TGAANAEYLRSLVLDNK---RAKDDSHHLQGQRKWLASSRWAAAAQFALAASLTSSHNDL 1534
Query: 962 QRLEVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLS 1021
Q LE+ED ++ILK+T DAVVTL+ VLEGKHDKEI ESL +H +S +GW S+LYRM+EGL+
Sbjct: 1535 QSLEIEDDSSILKRTNDAVVTLRSVLEGKHDKEIAESLEEHNISREGWLSSLYRMVEGLA 1594
Query: 1022 VMSRLARNRLHQSDYDLEERSIDWDHVEM 1050
VMSRLARNR+ Q DY+ E + DWD+VEM
Sbjct: 1595 VMSRLARNRMQQPDYNFEGNTFDWDNVEM 1623
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1050 | ||||||
| TAIR|locus:2061559 | 1623 | ABCC2 "ATP-binding cassette C2 | 0.990 | 0.640 | 0.762 | 0.0 | |
| TAIR|locus:2204202 | 1622 | ABCC1 "ATP-binding cassette C1 | 0.993 | 0.643 | 0.737 | 0.0 | |
| TAIR|locus:2028155 | 1495 | ABCC11 "ATP-binding cassette C | 0.860 | 0.604 | 0.704 | 0.0 | |
| ZFIN|ZDB-GENE-040426-1523 | 1567 | abcc2 "ATP-binding cassette, s | 0.557 | 0.373 | 0.443 | 1.5e-190 | |
| UNIPROTKB|F1PHV0 | 1544 | ABCC2 "Uncharacterized protein | 0.571 | 0.388 | 0.415 | 4.7e-185 | |
| MGI|MGI:1352447 | 1543 | Abcc2 "ATP-binding cassette, s | 0.558 | 0.379 | 0.423 | 2e-184 | |
| UNIPROTKB|F1S8V9 | 1544 | ABCC2 "Uncharacterized protein | 0.628 | 0.427 | 0.384 | 1.1e-183 | |
| RGD|2366 | 1541 | Abcc2 "ATP-binding cassette, s | 0.567 | 0.386 | 0.420 | 3.4e-182 | |
| UNIPROTKB|F1MIP7 | 1543 | ABCC2 "Uncharacterized protein | 0.555 | 0.377 | 0.413 | 3.4e-182 | |
| UNIPROTKB|E1C6S5 | 1552 | ABCC2 "Uncharacterized protein | 0.612 | 0.414 | 0.405 | 4.9e-181 |
| TAIR|locus:2061559 ABCC2 "ATP-binding cassette C2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4070 (1437.8 bits), Expect = 0., P = 0.
Identities = 800/1049 (76%), Positives = 891/1049 (84%)
Query: 7 QVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLD 66
QVVNANVSLKR+EE L EE+ILLPNPP+ G PAISIRNGYFSWDSK +RPTL NINLD
Sbjct: 579 QVVNANVSLKRLEEVLATEERILLPNPPIEPGEPAISIRNGYFSWDSKGDRPTLSNINLD 638
Query: 67 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNI 126
+P+GSLVA+VG TGEGKTSLISA+LGELP SDA +RG+VAYVPQVSWIFNATVRDNI
Sbjct: 639 VPLGSLVAVVGSTGEGKTSLISAILGELPATSDAIVTLRGSVAYVPQVSWIFNATVRDNI 698
Query: 127 LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 186
LFGS F+ +YE+AIDVTSL+HDL+LLPGGD+TEIGERGVNISGGQKQRVSMARAVYSNS
Sbjct: 699 LFGSPFDREKYERAIDVTSLKHDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNS 758
Query: 187 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKE 246
DV+IFDDPLSALDAHVG+QVF++CI+ EL KTRVLVTNQLHFLSQVDRI+LVHEG VKE
Sbjct: 759 DVYIFDDPLSALDAHVGQQVFEKCIKRELGQKTRVLVTNQLHFLSQVDRIVLVHEGTVKE 818
Query: 247 EGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDT 306
EGT+E+LS+NG LFQ+LMENAGK+EEY EE + E D +P ANG N L + SD
Sbjct: 819 EGTYEELSSNGPLFQRLMENAGKVEEYSEENGEAEA-DQTAEQPVANGNTNGLQMDGSDD 877
Query: 307 RKTKEG-----KSVLIKQEERETGVVSFKVLSRYKDAXXXXXXXXXXXXCYFLTETLRVS 361
+K+KEG KSVLIKQEERETGVVS++VL RY+DA CY LTE RV+
Sbjct: 878 KKSKEGNKKGGKSVLIKQEERETGVVSWRVLKRYQDALGGAWVVMMLLLCYVLTEVFRVT 937
Query: 362 SSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAML 421
SSTWLS WTD + K+HGPLFYN IY+LLSFGQVLVTL NSYWLI+SSLYAAK+LHD ML
Sbjct: 938 SSTWLSEWTDAGTPKSHGPLFYNLIYALLSFGQVLVTLTNSYWLIMSSLYAAKKLHDNML 997
Query: 422 HSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVST 481
HSILRAPM FFHTNPLGRIINRFAKDLGDIDR VAVFVNMFMGQVSQLLST VLIGIVST
Sbjct: 998 HSILRAPMSFFHTNPLGRIINRFAKDLGDIDRTVAVFVNMFMGQVSQLLSTVVLIGIVST 1057
Query: 482 MSLWAIMPXXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDR 541
+SLWAIMP Q+TAREVKR+DSI+RSPVYAQFGEALNGLSTIRAYKAYDR
Sbjct: 1058 LSLWAIMPLLVLFYGAYLYYQNTAREVKRMDSISRSPVYAQFGEALNGLSTIRAYKAYDR 1117
Query: 542 MADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFAS 601
MADING+SMD NIR+TLVNMGANRWL IRLE +GGLMIWLTA+FAV+QNG AENQ+AFAS
Sbjct: 1118 MADINGRSMDNNIRFTLVNMGANRWLGIRLETLGGLMIWLTASFAVMQNGRAENQQAFAS 1177
Query: 602 TMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP 661
TMGLLLSYALNITSLLT VLRLASLAENSLNAVERVGNYIE+P EAP VIE+NRPPPGWP
Sbjct: 1178 TMGLLLSYALNITSLLTGVLRLASLAENSLNAVERVGNYIEIPPEAPPVIENNRPPPGWP 1237
Query: 662 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 721
SSGSIKFEDVVLRYRP+LPPVLHG+SF I P+DKVGIVGRTGAGKSS+LN LFRIVE+E+
Sbjct: 1238 SSGSIKFEDVVLRYRPQLPPVLHGVSFFIHPTDKVGIVGRTGAGKSSLLNALFRIVEVEK 1297
Query: 722 GRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHL 781
GRILID D+ KFGLMDLRK+LGIIPQSPVLFSGTVRFNLDPF EH+DADLWE+LERAHL
Sbjct: 1298 GRILIDDCDVGKFGLMDLRKVLGIIPQSPVLFSGTVRFNLDPFGEHNDADLWESLERAHL 1357
Query: 782 KDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALI 841
KD IRRN LGLDA+VSEAGENFSVGQRQ KILVLDEATAAVDVRTDALI
Sbjct: 1358 KDTIRRNPLGLDAEVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 1417
Query: 842 QKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 901
QKTIREEFKSCTMLIIAHRLNTIIDCD+IL+LDSGRV E+ +PE LLSNEGSSFSKMVQS
Sbjct: 1418 QKTIREEFKSCTMLIIAHRLNTIIDCDKILVLDSGRVQEFSSPENLLSNEGSSFSKMVQS 1477
Query: 902 TGAANAQYLRSLVLGGEAENKLREENKQIDGXXXXXXXXXXXXXXXXXXXVSLTSSHNDL 961
TGAANA+YLRSLVL + + ++++ + G SLTSSHNDL
Sbjct: 1478 TGAANAEYLRSLVLDNK---RAKDDSHHLQGQRKWLASSRWAAAAQFALAASLTSSHNDL 1534
Query: 962 QRLEVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLS 1021
Q LE+ED ++ILK+T DAVVTL+ VLEGKHDKEI ESL +H +S +GW S+LYRM+EGL+
Sbjct: 1535 QSLEIEDDSSILKRTNDAVVTLRSVLEGKHDKEIAESLEEHNISREGWLSSLYRMVEGLA 1594
Query: 1022 VMSRLARNRLHQSDYDLEERSIDWDHVEM 1050
VMSRLARNR+ Q DY+ E + DWD+VEM
Sbjct: 1595 VMSRLARNRMQQPDYNFEGNTFDWDNVEM 1623
|
|
| TAIR|locus:2204202 ABCC1 "ATP-binding cassette C1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3978 (1405.4 bits), Expect = 0., P = 0.
Identities = 771/1045 (73%), Positives = 884/1045 (84%)
Query: 7 QVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLD 66
Q+VNANVSL R+EE L EE++LLPNPP+ G PAISIRNGYFSWDSKA+RPTL NINLD
Sbjct: 579 QMVNANVSLNRLEEVLSTEERVLLPNPPIEPGQPAISIRNGYFSWDSKADRPTLSNINLD 638
Query: 67 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNI 126
IP+GSLVA+VG TGEGKTSLISAMLGELP SDA+ +RG+VAYVPQVSWIFNATVRDNI
Sbjct: 639 IPLGSLVAVVGSTGEGKTSLISAMLGELPARSDATVTLRGSVAYVPQVSWIFNATVRDNI 698
Query: 127 LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 186
LFG+ F+ +YE+ IDVT+LQHDL+LLPGGD+TEIGERGVNISGGQKQRVSMARAVYSNS
Sbjct: 699 LFGAPFDQEKYERVIDVTALQHDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNS 758
Query: 187 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKE 246
DV I DDPLSALDAHVG+QVF++CI+ EL TRVLVTNQLHFLSQVD+I+LVHEG VKE
Sbjct: 759 DVCILDDPLSALDAHVGQQVFEKCIKRELGQTTRVLVTNQLHFLSQVDKILLVHEGTVKE 818
Query: 247 EGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDT 306
EGT+E+L ++G LFQ+LMENAGK+E+Y EE + E VD + KP NG N+L K+ +T
Sbjct: 819 EGTYEELCHSGPLFQRLMENAGKVEDYSEENGEAE-VDQTSVKPVENGNANNLQKDGIET 877
Query: 307 RKTKEGKSVLIKQEERETGVVSFKVLSRYKDAXXXXXXXXXXXXCYFLTETLRVSSSTWL 366
+ +KEG SVL+K+EERETGVVS+KVL RY++A CY LT+ RVSSSTWL
Sbjct: 878 KNSKEGNSVLVKREERETGVVSWKVLERYQNALGGAWVVMMLVICYVLTQVFRVSSSTWL 937
Query: 367 SYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILR 426
S WTD + KTHGPLFYN +Y+LLSFGQV VTL NSYWLI+SSLYAAK++HDAML SILR
Sbjct: 938 SEWTDSGTPKTHGPLFYNIVYALLSFGQVSVTLINSYWLIMSSLYAAKKMHDAMLGSILR 997
Query: 427 APMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWA 486
APMVFF TNPLGRIINRFAKD+GDIDR VAVFVNMFMG ++QLLST +LIGIVST+SLWA
Sbjct: 998 APMVFFQTNPLGRIINRFAKDMGDIDRTVAVFVNMFMGSIAQLLSTVILIGIVSTLSLWA 1057
Query: 487 IMPXXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADIN 546
IMP Q+T+RE+KR+DS TRSPVYAQFGEALNGLS+IRAYKAYDRMA+IN
Sbjct: 1058 IMPLLVVFYGAYLYYQNTSREIKRMDSTTRSPVYAQFGEALNGLSSIRAYKAYDRMAEIN 1117
Query: 547 GKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLL 606
G+SMD NIR+TLVNM ANRWL IRLE++GGLM+WLTA+ AV+QNG A NQ+A+ASTMGLL
Sbjct: 1118 GRSMDNNIRFTLVNMAANRWLGIRLEVLGGLMVWLTASLAVMQNGKAANQQAYASTMGLL 1177
Query: 607 LSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSI 666
LSYAL+ITS LTAVLRLASLAENSLN+VERVGNYIE+PSEAPLVIE+NRPPPGWPSSGSI
Sbjct: 1178 LSYALSITSSLTAVLRLASLAENSLNSVERVGNYIEIPSEAPLVIENNRPPPGWPSSGSI 1237
Query: 667 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 726
KFEDVVLRYRPELPPVLHG+SF I P DKVGIVGRTGAGKSS+LN LFRIVELE+GRILI
Sbjct: 1238 KFEDVVLRYRPELPPVLHGVSFLISPMDKVGIVGRTGAGKSSLLNALFRIVELEKGRILI 1297
Query: 727 DGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIR 786
D DI +FGLMDLRK+LGIIPQ+PVLFSGTVRFNLDPFSEH+DADLWE+LERAHLKD IR
Sbjct: 1298 DECDIGRFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFSEHNDADLWESLERAHLKDTIR 1357
Query: 787 RNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIR 846
RN LGLDA+V+EAGENFSVGQRQ KILVLDEATAAVDVRTD LIQKTIR
Sbjct: 1358 RNPLGLDAEVTEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDVLIQKTIR 1417
Query: 847 EEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAAN 906
EEFKSCTMLIIAHRLNTIIDCD++L+LDSG+V E+ +PE LLSN SSFSKMVQSTG AN
Sbjct: 1418 EEFKSCTMLIIAHRLNTIIDCDKVLVLDSGKVQEFSSPENLLSNGESSFSKMVQSTGTAN 1477
Query: 907 AQYLRSLVLGGEAENKLREENKQ-IDGXXXXXXXXXXXXXXXXXXXVSLTSSHNDLQRLE 965
A+YLRS+ L + + ++ Q ++G VSLTSSHNDLQ LE
Sbjct: 1478 AEYLRSITLENKRTREANGDDSQPLEGQRKWQASSRWAAAAQFALAVSLTSSHNDLQSLE 1537
Query: 966 VEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLSVMSR 1025
+ED N+ILKKTKDAVVTL+ VLEGKHDKEIE+SLNQ ++S + WW +LY+M+EGL+VMSR
Sbjct: 1538 IEDDNSILKKTKDAVVTLRSVLEGKHDKEIEDSLNQSDISRERWWPSLYKMVEGLAVMSR 1597
Query: 1026 LARNRLHQSDYDLEERSIDWDHVEM 1050
LARNR+ DY+LE +S DWD+VEM
Sbjct: 1598 LARNRMQHPDYNLEGKSFDWDNVEM 1622
|
|
| TAIR|locus:2028155 ABCC11 "ATP-binding cassette C11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3241 (1145.9 bits), Expect = 0., P = 0.
Identities = 640/908 (70%), Positives = 736/908 (81%)
Query: 7 QVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLD 66
Q VNANVSL+R+EE LL+EE+IL NPPL G PAISI+NGYFSWDSK +PTL +INL+
Sbjct: 580 QAVNANVSLQRIEELLLSEERILAQNPPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLE 639
Query: 67 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNI 126
IPVGSLVAIVGGTGEGKTSLISAMLGEL +S IRG+VAYVPQVSWIFNAT+R+NI
Sbjct: 640 IPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVDIRGSVAYVPQVSWIFNATLRENI 699
Query: 127 LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 186
LFGS FE RY +AIDVT+LQHDLDL PG D TEIGERGVNISGGQKQRVSMARAVYSNS
Sbjct: 700 LFGSDFESERYWRAIDVTALQHDLDLFPGRDRTEIGERGVNISGGQKQRVSMARAVYSNS 759
Query: 187 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKE 246
D++IFDDP SALDAHV QVFD C++ EL GKTRVLVTNQLHFL +DRIILV EGM+KE
Sbjct: 760 DIYIFDDPFSALDAHVAHQVFDSCVKHELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKE 819
Query: 247 EGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDT 306
EG F +LS +G LF+KLMENAGKM+ E + E + +K V +
Sbjct: 820 EGNFAELSKSGTLFKKLMENAGKMDATQEVNTNDENI-SKLGPTVTIDVSE---RSLGSI 875
Query: 307 RKTKEGKSVLIKQEERETGVVSFKVLSRYKDAXXXXXXXXXXXXCYFLTETLRVSSSTWL 366
++ K G+S+L+KQEERETG++S+ V+ RY A CY TE LRV SSTWL
Sbjct: 876 QQGKWGRSMLVKQEERETGIISWDVVMRYNKAVGGLWVVMILLVCYLTTEVLRVLSSTWL 935
Query: 367 SYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILR 426
S WTDQS+ K++ P FY +Y+LL FGQV VT NS+WLI SSL+AAKRLHDAML+SILR
Sbjct: 936 SIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILR 995
Query: 427 APMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWA 486
APM+FF TNP GR+INRF+KD+GDIDRNVA +NMFM Q+ QLLSTF LIGIVST+SLWA
Sbjct: 996 APMLFFETNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGIVSTISLWA 1055
Query: 487 IMPXXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADIN 546
IMP QST+REV+RLDS+TRSP+YA FGEALNGLS+IRAYKAYDRMA IN
Sbjct: 1056 IMPLLILFYATYIYYQSTSREVRRLDSVTRSPIYALFGEALNGLSSIRAYKAYDRMAKIN 1115
Query: 547 GKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLL 606
GKSMD NIR+TL + +NRWL IR E +GG+MIWLTATFAV++ G+AENQ FASTMGLL
Sbjct: 1116 GKSMDNNIRFTLASTSSNRWLTIRSESLGGVMIWLTATFAVLRYGNAENQAVFASTMGLL 1175
Query: 607 LSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSI 666
LSY LNIT+LL+ VLR AS AENSLN+VERVGNYI+LPSEA +IE+NRP GWPS GSI
Sbjct: 1176 LSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSI 1235
Query: 667 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 726
+FEDV LRYRP LPPVLHGLSF + PS+KVG+VGRTGAGKSSMLN L+RIVELE+GRILI
Sbjct: 1236 QFEDVHLRYRPGLPPVLHGLSFFVYPSEKVGVVGRTGAGKSSMLNALYRIVELEKGRILI 1295
Query: 727 DGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIR 786
D +D+AKFGL DLR++L IIPQSPVLFSGTVRFN+DPFSEH+DADLWEALERAH+KD I
Sbjct: 1296 DDYDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVID 1355
Query: 787 RNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIR 846
RN GLDA+VSE GENFSVGQRQ KIL LDEATA+VDVRTD+LIQ+TIR
Sbjct: 1356 RNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILFLDEATASVDVRTDSLIQRTIR 1415
Query: 847 EEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAAN 906
EEFKSCTMLIIAHRLNTIIDCD+IL+L SG+VLEYD+P+ELLS + S+F KMV STG N
Sbjct: 1416 EEFKSCTMLIIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFKMVHSTGPEN 1475
Query: 907 AQYLRSLV 914
QYL +LV
Sbjct: 1476 GQYLSNLV 1483
|
|
| ZFIN|ZDB-GENE-040426-1523 abcc2 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1233 (439.1 bits), Expect = 1.5e-190, Sum P(2) = 1.5e-190
Identities = 266/600 (44%), Positives = 371/600 (61%)
Query: 310 KEGKSVLIKQEERETGVVSFKVLSRYKDAXXXXXXXXXXXXCYFLTETLRVSSSTWLSYW 369
K+G+ LI++E ETG V F V +Y A YF+ + + WLS W
Sbjct: 964 KKGQR-LIEKEMMETGRVKFSVYLQYLSAMGWWYVGFSFVF-YFIQNVAVIGQNLWLSDW 1021
Query: 370 TDQSSL---KTHGPLFYNT---IYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHS 423
TD S +T+ +T ++ L Q + + L S+ A++ LH ++L +
Sbjct: 1022 TDDSIEYFNQTYPNHIRDTRIGVFGALGLAQGFLVFFGTILLADGSISASRTLHTSLLTN 1081
Query: 424 ILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMS 483
IL+ PM+FF T P GRI+NRFAKD+ +D + + ++ + +L T +I + + +
Sbjct: 1082 ILKVPMMFFDTTPSGRIVNRFAKDIFTVDEMIPMSFRSWILCLLGVLGTLFVICLATPIF 1141
Query: 484 LWAIMPXXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMA 543
++P +T+R+++RLDS++RSP+Y+ FGE ++GLS IRAY DR
Sbjct: 1142 TAVVVPMAVVYYFVQRFYVATSRQLRRLDSVSRSPIYSHFGETVSGLSVIRAYGHQDRFL 1201
Query: 544 DINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTM 603
N ++D+N++ + +NRWLA+RLE +G L+++ A FAV+ S + +
Sbjct: 1202 KHNEDTIDQNLKSVYPWIVSNRWLAMRLESLGNLVVFFAALFAVISRDSLNS-----GLV 1256
Query: 604 GLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSS 663
GL +SYALN+T L ++R+ S E ++ AVERV Y E+ +EAP V S RPP WPS+
Sbjct: 1257 GLSISYALNVTQTLNWLVRMTSELETNIVAVERVREYAEIQNEAPWVT-SVRPPDDWPSA 1315
Query: 664 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 723
G+I+FED +RYRPEL VLHG++ I ++K+GIVGRTGAGKSS+ N LFRIVE GR
Sbjct: 1316 GNIRFEDYKVRYRPELELVLHGVTCDIQSTEKIGIVGRTGAGKSSLTNCLFRIVEAADGR 1375
Query: 724 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKD 783
ILID DIA GL DLR L IIPQ PVLFSGT+R NLDPF SDA++W LE AHLK+
Sbjct: 1376 ILIDDIDIATLGLHDLRSRLTIIPQDPVLFSGTLRMNLDPFQTFSDAEIWSVLELAHLKE 1435
Query: 784 AIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQK 843
+R GL+ +VSE GEN S+GQRQ +IL+LDEATAAVD+ TD LIQ
Sbjct: 1436 YVRGLPTGLEHEVSEGGENLSLGQRQLLCLARALLRKSRILILDEATAAVDLETDDLIQS 1495
Query: 844 TIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTG 903
TIR EF CT+L IAHRLNTI+D R+++LDSG+++E+D+P ELLS G FS M + G
Sbjct: 1496 TIRREFSHCTVLTIAHRLNTILDSSRVMVLDSGKIVEFDSPNELLSKPGH-FSSMAEDAG 1554
|
|
| UNIPROTKB|F1PHV0 ABCC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1177 (419.4 bits), Expect = 4.7e-185, Sum P(2) = 4.7e-185
Identities = 258/621 (41%), Positives = 374/621 (60%)
Query: 297 NDLPKEASDTRKTKE----GKSVLIKQEERETGVVSFKVLSRYKDAXXXXXXXXXXXXCY 352
N L +T K +E G+ LIK+E +TG V F + +Y A Y
Sbjct: 928 NSLKTRNVNTLKEEEEPVKGQK-LIKKEFIQTGKVKFSIYLKYLRAIGWYLIFLIIFA-Y 985
Query: 353 FLTETLRVSSSTWLSYWTDQSSL--KTHGPLFYNT----IYSLLSFGQ-VLVTLANSYWL 405
+ + S+ WLS WT+ S T+ P +Y +L Q V V +AN
Sbjct: 986 VINSVAYIGSNLWLSAWTNDSKAFNGTNYPASQRDMRIGVYGVLGLAQGVFVLMANLL-S 1044
Query: 406 IISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQ 465
S +A+ LH +L++IL+APM FF T P GRI+NRFA D+ +D + + ++
Sbjct: 1045 AHGSTHASNILHRQLLNNILQAPMSFFDTTPTGRIVNRFAGDISTVDDTLPQSLRSWILC 1104
Query: 466 VSQLLSTFVLIGIVSTMSLWAIMPXXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQFGE 525
++ST V+I + + + I+P +T+R++KRLDS+TRSP+Y+ F E
Sbjct: 1105 FLGIISTLVMICTATPVFIIVIIPLSIIYVSIQIFYVATSRQLKRLDSVTRSPIYSHFSE 1164
Query: 526 ALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATF 585
++GLS IRA++ R N +D N + + +NRWLA+RLE++G L+++ ++
Sbjct: 1165 TVSGLSVIRAFEHQQRFLKHNEVGIDTNQKCVFSWIVSNRWLAVRLELIGNLIVFFSSLM 1224
Query: 586 AVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPS 645
V+ + T+G +LS ALNIT L ++R+ S E ++ AVER+ YI++ +
Sbjct: 1225 MVIYKATLSGD-----TVGFVLSNALNITQTLNWLVRMTSEIETNIVAVERINEYIKVEN 1279
Query: 646 EAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAG 705
EAP V + RPPPGWPS G I+F + +RYRPEL VL G++ I +K+G+VGRTGAG
Sbjct: 1280 EAPWVTDK-RPPPGWPSKGEIRFNNYQVRYRPELDLVLRGITCDIRSMEKIGVVGRTGAG 1338
Query: 706 KSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS 765
KSS+ N LFRI+E G+I+IDG DIA GL DLR+ L IIPQ P+LFSG++R NLDPF+
Sbjct: 1339 KSSLTNGLFRILEAAGGQIIIDGVDIASIGLHDLREKLTIIPQDPILFSGSLRMNLDPFN 1398
Query: 766 EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILV 825
+SD ++W+ALE AHLK + LGL +V+EAG+N S+GQRQ KIL+
Sbjct: 1399 HYSDEEIWKALELAHLKTFVAGLQLGLSHEVAEAGDNLSIGQRQLLCLARALLRKSKILI 1458
Query: 826 LDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPE 885
+DEATAAVD+ TD LIQ TI++EF CT + IAHRL+TI+D D+I++LD+G+++EY +P+
Sbjct: 1459 MDEATAAVDLETDHLIQMTIQKEFSHCTTITIAHRLHTIMDSDKIIVLDNGKIVEYGSPQ 1518
Query: 886 ELLSNEGSSFSKMVQSTGAAN 906
ELL N G F M + G N
Sbjct: 1519 ELLRNSGP-FYLMAKEAGIEN 1538
|
|
| MGI|MGI:1352447 Abcc2 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1178 (419.7 bits), Expect = 2.0e-184, Sum P(2) = 2.0e-184
Identities = 254/600 (42%), Positives = 363/600 (60%)
Query: 316 LIKQEERETGVVSFKVLSRYKDAXXXXXXXXXXXXCYFLTETLRVSSSTWLSYWTDQSSL 375
LIK+E ETG V F + +Y A Y L + ++ WLS WT S
Sbjct: 949 LIKKEFVETGKVKFSIYLKYLQAVGWWSLLFIVIF-YVLNYVAFIGTNLWLSAWTSDSEK 1007
Query: 376 KT---HGPLFYNT---IYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPM 429
+ + P + ++ L Q + L++S W I + A+K LH +L +ILRAPM
Sbjct: 1008 QNGTDNSPSQRDMRIGVFGALGIAQGIFLLSSSLWSIYACRNASKTLHRQLLTNILRAPM 1067
Query: 430 VFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMP 489
FF T P GRI+NRFA D+ +D + + ++ ++ST V+I + + + + I+P
Sbjct: 1068 SFFDTTPTGRIVNRFAGDISTVDDTLPQTLRSWLLCFFGIVSTLVMICMATPIFIIIIIP 1127
Query: 490 XXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKS 549
+T+R+++RLDS+T+SP+Y+ F E ++GL IRA++ R + K
Sbjct: 1128 LSILYVSVQVFYVATSRQLRRLDSVTKSPIYSHFSETVSGLPVIRAFEHQQRFLANSEKQ 1187
Query: 550 MDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSY 609
+D N + + +NRWLAIRLE+VG L+++ +A V+ S T+G +LS
Sbjct: 1188 IDTNQKCVFSWITSNRWLAIRLELVGNLIVFCSALLLVIYKNSLTGD-----TVGFVLSN 1242
Query: 610 ALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFE 669
ALNIT L ++R+ S E ++ AVER+ YI + +EAP V + +PP WP G I+F
Sbjct: 1243 ALNITQTLNWLVRMTSEVETNIVAVERINEYINVDNEAPWVTDK-KPPADWPKKGEIQFN 1301
Query: 670 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF 729
+ +RYRPEL VL G++ I ++KVG+VGRTGAGKSS+ N LFRI+E G+I+IDG
Sbjct: 1302 NYQVRYRPELDLVLKGITCNIKSTEKVGVVGRTGAGKSSLTNCLFRILESAGGQIIIDGI 1361
Query: 730 DIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNS 789
DIA GL DLR L IIPQ P+LFSG +R NLDPF+++SD ++W ALE AHLK +
Sbjct: 1362 DIASIGLHDLRGRLTIIPQDPILFSGNLRMNLDPFNKYSDEEIWRALELAHLKSFVAGLQ 1421
Query: 790 LGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEF 849
LGL +V+E G+N S+GQRQ KILVLDEATAAVD+ TD+LIQ TIR EF
Sbjct: 1422 LGLLHEVTEGGDNLSIGQRQLLCLGRAVLRKSKILVLDEATAAVDLETDSLIQTTIRNEF 1481
Query: 850 KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQY 909
CT++ IAHRL+TI+D D+I++LDSG+++EY +PEELLSN G F M + G + +
Sbjct: 1482 SQCTVITIAHRLHTIMDSDKIMVLDSGKIVEYGSPEELLSNMGP-FYLMAKEAGIESVNH 1540
|
|
| UNIPROTKB|F1S8V9 ABCC2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1177 (419.4 bits), Expect = 1.1e-183, Sum P(2) = 1.1e-183
Identities = 262/682 (38%), Positives = 390/682 (57%)
Query: 239 VHEGMVKEEGTF-EDLSNNG-ELFQKLMENAGKMEEYVEEKEDGETVD--NKTSKPAANG 294
V E ++E T ED + EL + EN E +T+ +++S
Sbjct: 865 VKEAGPEDEATVNEDSEEDACELMPSVEENPEDAASLKRENSLRQTLSRSSRSSSRRLKS 924
Query: 295 VDNDLPKEASDTRKTKEGKSV----LIKQEERETGVVSFKVLSRYKDAXXXXXXXXXXXX 350
+ + L + K +E + V LIK+E +TG V F + +Y A
Sbjct: 925 LKDSLKTRKGNILKEEETEPVKGQKLIKKEFLQTGKVKFSIYLKYLQAIGWCSIVFIVLG 984
Query: 351 CYFLTETLRVSSSTWLSYWTDQSSL--KTHGPLFYNT----IYSLLSFGQVLVTLANSYW 404
+ L + S+ WLS WT S + T+ P ++ L Q + L +
Sbjct: 985 -FMLYSVAFIGSNLWLSAWTGDSKIYNSTNYPTSQRDLRVGVFGALGLAQGIFVLIATLC 1043
Query: 405 LIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMG 464
+ +A+ LH +L +ILRAPM FF T P+GRI+NRFA D+ +D + + + ++
Sbjct: 1044 SVYGCTHASSILHTQLLSNILRAPMSFFDTTPIGRIVNRFAGDISTLDDTLPMSLRSWLM 1103
Query: 465 QVSQLLSTFVLIGIVSTMSLWAIMPXXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQFG 524
++ST V+I + + + + I+P +T+R+++RLDS+TRSP+Y+ F
Sbjct: 1104 CFLGIISTLVMICLATPVFVIIIIPLGIIYVAVQIFYVATSRQLRRLDSVTRSPIYSHFS 1163
Query: 525 EALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTAT 584
E ++GL IRA++ R N ++D N + + +NRWLA+RLE +G ++++ ++
Sbjct: 1164 ETVSGLPVIRAFEHQQRFLKHNEITIDTNQKCVFSWIISNRWLAVRLEFIGNMIVFCSSL 1223
Query: 585 FAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELP 644
V+ + T+G +LS ALNIT L ++R+ S E ++ AVER+ YI +
Sbjct: 1224 MMVIYRNTLSGD-----TVGFVLSNALNITQTLNWLVRMTSEIETNIVAVERINEYIHVE 1278
Query: 645 SEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGA 704
+EAP V + RPP GWPS G I+F + +RYRPEL VL G++ I ++K+G+VGRTGA
Sbjct: 1279 NEAPWVTDK-RPPDGWPSKGEIQFSNYQVRYRPELDLVLKGITCDIKSTEKIGVVGRTGA 1337
Query: 705 GKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPF 764
GKSS+ N+LFRI+E G+I IDG DIA GL DLR+ L IIPQ P+LFSGT+R NLDPF
Sbjct: 1338 GKSSLTNSLFRILEAAGGQITIDGVDIASIGLHDLREKLTIIPQDPILFSGTLRMNLDPF 1397
Query: 765 SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKIL 824
+ +SD +LW+ALE AHLK + LGL +V+E G+N S+GQRQ KIL
Sbjct: 1398 NSYSDEELWKALELAHLKSFVSHLQLGLSYEVTEGGDNLSIGQRQLLCLARALLRKSKIL 1457
Query: 825 VLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTP 884
++DEATAAVD+ TD LIQ TI+ EF CT + IAHRL+TI+D D++++LD+G +++YD+P
Sbjct: 1458 IMDEATAAVDLETDHLIQTTIQTEFSHCTTITIAHRLHTIMDSDKVMVLDNGNIVQYDSP 1517
Query: 885 EELLSNEGSSFSKMVQSTGAAN 906
EELL G F M Q G N
Sbjct: 1518 EELLKTPGP-FYYMAQEAGIEN 1538
|
|
| RGD|2366 Abcc2 "ATP-binding cassette, subfamily C (CFTR/MRP), member 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1180 (420.4 bits), Expect = 3.4e-182, Sum P(2) = 3.4e-182
Identities = 257/611 (42%), Positives = 368/611 (60%)
Query: 305 DTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDAXXXXXXXXXXXXCYFLTETLRVSSST 364
+ K EG+ LIK+E ETG V F + +Y A Y L + S+
Sbjct: 937 EKEKEVEGQK-LIKKEFVETGKVKFSIYLKYLQAVGWWSILFIILF-YGLNNVAFIGSNL 994
Query: 365 WLSYWT-DQSSLK-THGPLFYNT----IYSLLSFGQVLVTLANSYWLIISSLYAAKRLHD 418
WLS WT D +L T+ + ++ L Q + L ++ W I + A+K LH
Sbjct: 995 WLSAWTSDSDNLNGTNNSSSHRDMRIGVFGALGLAQGICLLISTLWSIYACRNASKALHG 1054
Query: 419 AMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGI 478
+L +ILRAPM FF T P GRI+NRF+ D+ +D + + +M + T V+I +
Sbjct: 1055 QLLTNILRAPMRFFDTTPTGRIVNRFSGDISTVDDLLPQTLRSWMMCFFGIAGTLVMICM 1114
Query: 479 VSTMSLWAIMPXXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKA 538
+ + I+P +T+R+++RLDS+T+SP+Y+ F E + GL IRA++
Sbjct: 1115 ATPVFAIIIIPLSILYISVQVFYVATSRQLRRLDSVTKSPIYSHFSETVTGLPIIRAFEH 1174
Query: 539 YDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEA 598
R N K +D N + + +NRWLAIRLE+VG L+++ +A V+ +
Sbjct: 1175 QQRFLAWNEKQIDINQKCVFSWITSNRWLAIRLELVGNLVVFCSALLLVIYRKTLTGD-- 1232
Query: 599 FASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPP 658
+G +LS ALNIT L ++R+ S AE ++ AVER+ YI + +EAP V + RPP
Sbjct: 1233 ---VVGFVLSNALNITQTLNWLVRMTSEAETNIVAVERISEYINVENEAPWVTDK-RPPA 1288
Query: 659 GWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 718
WP G I+F + +RYRPEL VL G++ I +KVG+VGRTGAGKSS+ N LFRI+E
Sbjct: 1289 DWPRHGEIQFNNYQVRYRPELDLVLKGITCNIKSGEKVGVVGRTGAGKSSLTNCLFRILE 1348
Query: 719 LERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALER 778
G+I+IDG D+A GL DLR+ L IIPQ P+LFSG++R NLDPF+++SD ++W ALE
Sbjct: 1349 SAGGQIIIDGIDVASIGLHDLRERLTIIPQDPILFSGSLRMNLDPFNKYSDEEVWRALEL 1408
Query: 779 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTD 838
AHL+ + LGL ++V+E G+N S+GQRQ KILVLDEATAAVD+ TD
Sbjct: 1409 AHLRSFVSGLQLGLLSEVTEGGDNLSIGQRQLLCLGRAVLRKSKILVLDEATAAVDLETD 1468
Query: 839 ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 898
+LIQ TIR+EF CT++ IAHRL+TI+D D+I++LD+G+++EY +PEELLSN GS F M
Sbjct: 1469 SLIQTTIRKEFSQCTVITIAHRLHTIMDSDKIMVLDNGKIVEYGSPEELLSNRGS-FYLM 1527
Query: 899 VQSTGAANAQY 909
+ G N +
Sbjct: 1528 AKEAGIENVNH 1538
|
|
| UNIPROTKB|F1MIP7 ABCC2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1168 (416.2 bits), Expect = 3.4e-182, Sum P(2) = 3.4e-182
Identities = 247/597 (41%), Positives = 360/597 (60%)
Query: 316 LIKQEERETGVVSFKVLSRYKDAXXXXXXXXXXXXCYFLTETLRVSSSTWLSYWTDQSSL 375
LIK+E +TG V F + +Y A + + + S+ WLS WT S +
Sbjct: 949 LIKKEFVQTGKVKFSIYLKYLQAIGWCSIVFILLG-FVIYYVAFIGSNLWLSAWTSDSKI 1007
Query: 376 K--THGPLFYNT----IYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPM 429
T+ P +Y L Q L + W + +A+ LH +L++ILRAPM
Sbjct: 1008 YNGTNYPSSQRDLRVGVYGALGVAQGLFVFIANIWSVYGCNHASNILHKQLLNNILRAPM 1067
Query: 430 VFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMP 489
FF T P+GRI+NRFA DL +D + + + + ++ST V+I + + + + I+P
Sbjct: 1068 SFFDTTPIGRIVNRFAGDLFTVDDTLPMSLRSCVLCFLGIISTLVMICLATPIFVVVIIP 1127
Query: 490 XXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKS 549
+T+R+++RLDS+TRSP+Y+ F E ++GLS IRA++ R + +
Sbjct: 1128 LGIIYVSVQIFYVATSRQLRRLDSVTRSPIYSHFSETVSGLSVIRAFEHQQRFLKQSETA 1187
Query: 550 MDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSY 609
+D N + + +NRWLA+RLE++G L+++ + V+ + T+G +LS
Sbjct: 1188 IDTNQKCVFSWITSNRWLAVRLELIGNLIVFFASLMMVIYRNNLSGD-----TVGFVLSN 1242
Query: 610 ALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFE 669
ALNIT L ++R+ S E ++ AVER+ YI + +EAP V + RPP GWPS G I+F
Sbjct: 1243 ALNITQTLNWLVRMTSEIETNIVAVERITEYINVENEAPWVTDK-RPPEGWPSKGEIQFS 1301
Query: 670 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF 729
+ +RYRPEL VL G++ I ++K+G+VGRTGAGKSS+ N LFRI+E G+I IDG
Sbjct: 1302 NYQVRYRPELDLVLKGITCDIKSTEKIGVVGRTGAGKSSLTNCLFRILEAAGGQITIDGV 1361
Query: 730 DIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNS 789
DIA GL DLR+ L IIPQ P+LFSG++R NLDPF+ +SD ++W+ALE +HLK +
Sbjct: 1362 DIASIGLHDLREKLTIIPQDPILFSGSLRMNLDPFNNYSDEEIWKALELSHLKSFVAGLQ 1421
Query: 790 LGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEF 849
GL +V+E G+N S+GQRQ KIL++DEATAAVD+ TD LIQ TI+ EF
Sbjct: 1422 AGLSYEVTEGGDNLSIGQRQLLCLARALLRKSKILIMDEATAAVDLETDQLIQTTIQTEF 1481
Query: 850 KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAAN 906
CT + IAHRL+TI+D D++++LDSG+++EYD+PEELL N G F M Q G N
Sbjct: 1482 SHCTTITIAHRLHTIMDSDKVMVLDSGKIVEYDSPEELLKNPGP-FYFMAQEAGIEN 1537
|
|
| UNIPROTKB|E1C6S5 ABCC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1164 (414.8 bits), Expect = 4.9e-181, Sum P(2) = 4.9e-181
Identities = 278/686 (40%), Positives = 404/686 (58%)
Query: 245 KEEGTFEDLSNNGELFQKLMENAG--KMEEYVEEKEDGETVDNKTSKPAA---NGVDNDL 299
+EEG E+ + +G +E G ME VEE D + V + A+ +
Sbjct: 884 QEEGAAEETTADG------IEEQGDESMEPCVEEGPD-DVVTMTLKREASIHRKEFTRSI 936
Query: 300 PKEASDTRKTKEGKSV-----LIKQEERETGVVSFKVLSRYKDAXXXXXXXXXXXXCYFL 354
+++ + K +E + LI++E ETG V F + RY A Y
Sbjct: 937 STQSTTSVKAQEEPNKIKGQRLIEKEAVETGKVKFSMYLRYLRAVGLGFSFCVAMS-YVG 995
Query: 355 TETLRVSSSTWLSYWTDQSSL---KTHGPLFYNTIYSLLSFGQVLVTLANSYWL--IISS 409
V ++ WLS WTD + +T+ P+ + + FG + V+ A +L I+SS
Sbjct: 996 EYAAYVGTNLWLSAWTDDAERYRNETY-PVQQRDL-RIGVFGALGVSQALFLFLATILSS 1053
Query: 410 ---LYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAV----FVNMF 462
+ A++ +H+ +L +ILR PM FF T P GRI+NRFAKD+ +D + + ++N F
Sbjct: 1054 HGAMRASRIVHEQLLSNILRVPMSFFDTTPTGRIVNRFAKDIFTVDETIPMSFRSWLNCF 1113
Query: 463 MGQVSQLLSTFVLIGIVSTMSLWAIMPXXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQ 522
MG ++ST ++I + + I+P ST+R+++RLDS+TRSP+Y+
Sbjct: 1114 MG----IISTLLMIALATPFFTVVIVPLGIFYYFVLRFYISTSRQLRRLDSVTRSPIYSH 1169
Query: 523 FGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLT 582
FGE ++GLS IRAY R N ++MD N + + +NRWLAIRLE VG L+++ +
Sbjct: 1170 FGETVSGLSVIRAYGHQQRFLQQNERTMDINQKSVYSWIVSNRWLAIRLEFVGSLVVFFS 1229
Query: 583 ATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIE 642
A AV+ S E +GL +S ALN+T L ++R++S E ++ AVERV Y +
Sbjct: 1230 ALLAVISRNSLEG-----GIVGLSVSSALNVTQTLNWLVRVSSELETNIVAVERVHEYTK 1284
Query: 643 LPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRT 702
+ EAP V + RPP WPS G I+F D +RYRPEL VL G++ +I ++KVG+VGRT
Sbjct: 1285 VKREAPWVTDK-RPPHSWPSKGEIQFVDYKVRYRPELELVLQGITCSIGSTEKVGVVGRT 1343
Query: 703 GAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLD 762
GAGKSS+ N LFR++E G+I+IDG DIA GL DLR+ L IIPQ PVLF+GT+R NLD
Sbjct: 1344 GAGKSSLTNCLFRVLEAAGGKIIIDGLDIATIGLHDLRQNLTIIPQDPVLFTGTLRMNLD 1403
Query: 763 PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXK 822
PF +++D ++W+ALE AHLK ++ L VSE GEN SVGQRQ K
Sbjct: 1404 PFDQYTDEEVWKALELAHLKAYVQELPERLQHVVSEGGENLSVGQRQLVCLARALLRKAK 1463
Query: 823 ILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYD 882
IL+LDEATAAVD+ TD LIQ TIR F CT+L IAHRL+TI+D +R++++ +G+++E+D
Sbjct: 1464 ILILDEATAAVDLETDHLIQTTIRSAFADCTVLTIAHRLHTIMDSNRVMVMHAGKIVEFD 1523
Query: 883 TPEELLSNEGSSFSKMVQSTGAANAQ 908
+PE+LL + S FS M + G N +
Sbjct: 1524 SPEKLLQKQ-SVFSAMAKDAGITNTE 1548
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q42093 | AB2C_ARATH | 3, ., 6, ., 3, ., 4, 4 | 0.8083 | 0.9904 | 0.6407 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1050 | |||
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.0 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.0 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.0 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 0.0 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-130 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-104 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-102 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 1e-97 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-80 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-79 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 2e-76 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 9e-75 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-64 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 7e-64 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-63 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 5e-60 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 7e-57 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 3e-56 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 3e-56 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 8e-56 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 8e-56 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-55 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 4e-55 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-53 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 3e-53 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-52 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 5e-52 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 7e-52 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 8e-52 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-51 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-50 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 6e-50 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 6e-50 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 3e-49 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 3e-47 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 7e-47 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 4e-46 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-43 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 3e-43 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 8e-42 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 3e-41 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 5e-41 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 1e-40 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 3e-40 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 8e-40 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-39 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-39 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-38 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 5e-38 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 5e-38 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-37 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-35 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-35 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-35 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 3e-35 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 2e-34 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-34 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 3e-34 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 1e-33 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 2e-33 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 8e-33 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 7e-32 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-31 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 5e-31 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-30 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-30 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 4e-30 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 5e-30 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 6e-30 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 6e-30 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 7e-30 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 8e-30 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 9e-30 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-29 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-29 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 4e-29 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 8e-29 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-28 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 1e-28 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 5e-28 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 2e-27 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-27 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 1e-26 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 2e-26 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-26 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 3e-26 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-26 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 5e-26 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 5e-26 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 6e-26 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 7e-26 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 7e-26 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 9e-26 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-25 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 1e-25 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-25 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-25 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 4e-25 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 5e-25 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 9e-25 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 9e-25 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-24 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-24 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 4e-24 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 6e-24 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 7e-24 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 8e-24 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 9e-24 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 1e-23 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-23 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 1e-23 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-23 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-23 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 3e-23 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 3e-23 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 4e-23 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 5e-23 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 5e-23 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 7e-23 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 8e-23 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-22 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 2e-22 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-22 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-22 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 3e-22 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 4e-22 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 4e-22 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 5e-22 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 6e-22 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 7e-22 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 7e-22 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 7e-22 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-21 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 1e-21 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-21 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-21 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-21 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 3e-21 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 3e-21 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 4e-21 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 7e-21 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-20 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-20 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-20 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-20 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 4e-20 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 5e-20 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 6e-20 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 7e-20 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 7e-20 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 8e-20 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 9e-20 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 1e-19 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-19 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-19 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-19 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-19 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-19 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-19 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-19 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-19 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-19 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-19 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 3e-19 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 3e-19 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 3e-19 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 4e-19 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 5e-19 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 5e-19 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 6e-19 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 6e-19 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 6e-19 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 8e-19 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 1e-18 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-18 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-18 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-18 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-18 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 2e-18 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 3e-18 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 3e-18 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-18 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 4e-18 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 6e-18 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 6e-18 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 8e-18 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 8e-18 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-17 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-17 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-17 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-17 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-17 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-17 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 4e-17 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 4e-17 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 5e-17 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 7e-17 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 9e-17 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 9e-17 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-16 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-16 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-16 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-16 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 5e-16 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 6e-16 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 6e-16 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 6e-16 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 7e-16 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 8e-16 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 8e-16 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 8e-16 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 8e-16 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 9e-16 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-15 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-15 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 1e-15 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-15 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-15 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 2e-15 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-15 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 2e-15 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 2e-15 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 3e-15 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 3e-15 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 3e-15 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 3e-15 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 4e-15 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 5e-15 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 5e-15 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 5e-15 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 6e-15 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 6e-15 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 6e-15 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 6e-15 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 7e-15 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 7e-15 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 7e-15 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 8e-15 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 8e-15 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 9e-15 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-14 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-14 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-14 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-14 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 1e-14 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 1e-14 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-14 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-14 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 2e-14 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-14 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-14 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-14 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 3e-14 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 3e-14 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 3e-14 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 3e-14 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 3e-14 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 3e-14 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 3e-14 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 3e-14 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 4e-14 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 5e-14 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 5e-14 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 5e-14 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 5e-14 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 6e-14 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 6e-14 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 6e-14 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 7e-14 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 9e-14 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 1e-13 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-13 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-13 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 1e-13 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 1e-13 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-13 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 1e-13 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-13 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 2e-13 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-13 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-13 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-13 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 2e-13 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-13 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 2e-13 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 2e-13 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 2e-13 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 3e-13 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 3e-13 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 3e-13 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 3e-13 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 4e-13 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 5e-13 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 5e-13 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 6e-13 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 6e-13 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 6e-13 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 6e-13 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 6e-13 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 7e-13 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 8e-13 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 8e-13 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 8e-13 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 9e-13 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 9e-13 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 9e-13 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-12 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 1e-12 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-12 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-12 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-12 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-12 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-12 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 2e-12 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-12 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 2e-12 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 3e-12 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 3e-12 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-12 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 3e-12 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 3e-12 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 3e-12 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 3e-12 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 3e-12 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 3e-12 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 3e-12 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 3e-12 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 3e-12 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 3e-12 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-12 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 4e-12 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 4e-12 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 4e-12 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 4e-12 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 4e-12 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 6e-12 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 7e-12 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 7e-12 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 7e-12 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 8e-12 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 8e-12 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 9e-12 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 9e-12 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 9e-12 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-11 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 1e-11 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-11 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 1e-11 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 1e-11 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 1e-11 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 1e-11 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 1e-11 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 1e-11 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-11 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-11 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-11 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 2e-11 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-11 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 2e-11 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 2e-11 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 3e-11 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 3e-11 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 3e-11 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 3e-11 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 3e-11 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 4e-11 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 4e-11 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 4e-11 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 5e-11 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 5e-11 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 5e-11 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 5e-11 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 5e-11 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 7e-11 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 7e-11 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 7e-11 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 7e-11 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 8e-11 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 8e-11 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 8e-11 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 9e-11 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 9e-11 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-10 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 1e-10 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 1e-10 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 1e-10 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-10 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-10 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-10 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 2e-10 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 2e-10 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 2e-10 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 3e-10 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 3e-10 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 3e-10 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 3e-10 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 3e-10 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 3e-10 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 3e-10 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 4e-10 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 4e-10 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 4e-10 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 4e-10 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 4e-10 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 5e-10 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 5e-10 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 5e-10 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 6e-10 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 6e-10 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 6e-10 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 7e-10 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 7e-10 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 8e-10 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 9e-10 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 9e-10 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-09 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 1e-09 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 1e-09 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 1e-09 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 1e-09 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 1e-09 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 1e-09 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 1e-09 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 1e-09 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-09 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 2e-09 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 2e-09 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-09 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-09 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-09 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-09 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 2e-09 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 2e-09 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 2e-09 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-09 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 3e-09 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 3e-09 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 3e-09 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 3e-09 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 4e-09 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 4e-09 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 4e-09 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 4e-09 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 4e-09 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 4e-09 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 5e-09 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 5e-09 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 6e-09 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 7e-09 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 7e-09 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 7e-09 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 7e-09 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 8e-09 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 8e-09 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 8e-09 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 8e-09 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 8e-09 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 9e-09 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-08 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-08 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 1e-08 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 1e-08 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 1e-08 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 1e-08 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 1e-08 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-08 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 2e-08 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-08 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 2e-08 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 2e-08 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 3e-08 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-08 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 3e-08 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 3e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 3e-08 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 3e-08 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 4e-08 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 4e-08 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 4e-08 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 4e-08 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 4e-08 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 4e-08 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 5e-08 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 5e-08 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 5e-08 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 5e-08 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 5e-08 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 6e-08 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 6e-08 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 6e-08 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 6e-08 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 6e-08 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 6e-08 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 7e-08 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 7e-08 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 7e-08 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 8e-08 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 8e-08 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 9e-08 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 1e-07 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 1e-07 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 1e-07 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 1e-07 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 1e-07 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 1e-07 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 1e-07 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 1e-07 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 1e-07 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 1e-07 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-07 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 2e-07 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 2e-07 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 2e-07 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 2e-07 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-07 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-07 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 2e-07 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 3e-07 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 3e-07 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 3e-07 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 3e-07 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 4e-07 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 4e-07 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 5e-07 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 5e-07 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 5e-07 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 6e-07 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 6e-07 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 7e-07 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 7e-07 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 7e-07 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 7e-07 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 8e-07 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 8e-07 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 8e-07 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 9e-07 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-06 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-06 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 1e-06 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-06 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-06 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-06 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-06 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-06 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 2e-06 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 2e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-06 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-06 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-06 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 2e-06 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 3e-06 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-06 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 3e-06 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 3e-06 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 3e-06 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 3e-06 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 3e-06 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 4e-06 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 4e-06 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 5e-06 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 5e-06 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 5e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 5e-06 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 5e-06 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 6e-06 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 6e-06 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 7e-06 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 8e-06 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 8e-06 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 8e-06 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 9e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 9e-06 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 9e-06 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-05 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-05 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-05 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-05 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 1e-05 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 1e-05 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 1e-05 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-05 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 1e-05 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 2e-05 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 2e-05 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-05 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-05 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-05 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-05 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-05 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 3e-05 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 3e-05 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 3e-05 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 3e-05 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 3e-05 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 3e-05 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 3e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 4e-05 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 4e-05 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 4e-05 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 5e-05 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 5e-05 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 6e-05 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 6e-05 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 7e-05 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 7e-05 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 8e-05 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 8e-05 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 9e-05 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 1e-04 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 1e-04 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-04 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 2e-04 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-04 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 2e-04 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 3e-04 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 3e-04 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 3e-04 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 4e-04 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 4e-04 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 4e-04 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 4e-04 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 5e-04 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 5e-04 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 5e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 5e-04 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 6e-04 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 6e-04 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 7e-04 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 7e-04 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 7e-04 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 8e-04 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 8e-04 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 8e-04 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 0.001 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 0.002 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 0.002 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 0.002 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 0.002 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 0.003 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 0.003 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 0.003 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 0.003 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 0.003 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 0.004 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 0.004 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 2179 bits (5647), Expect = 0.0
Identities = 900/1044 (86%), Positives = 975/1044 (93%), Gaps = 1/1044 (0%)
Query: 7 QVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLD 66
Q VNANVSLKR+EE LLAEE++LLPNPPL GLPAISI+NGYFSWDSKAERPTL NINLD
Sbjct: 580 QAVNANVSLKRLEELLLAEERVLLPNPPLEPGLPAISIKNGYFSWDSKAERPTLSNINLD 639
Query: 67 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNI 126
+PVGSLVAIVG TGEGKTSLISAMLGELPP SDAS VIRGTVAYVPQVSWIFNATVRDNI
Sbjct: 640 VPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNI 699
Query: 127 LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 186
LFGS F+P RYE+AIDVT+LQHDLDLLPGGD+TEIGERGVNISGGQKQRVSMARAVYSNS
Sbjct: 700 LFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNS 759
Query: 187 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKE 246
DV+IFDDPLSALDAHVGRQVFD+CI+ EL GKTRVLVTNQLHFLSQVDRIILVHEGM+KE
Sbjct: 760 DVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKE 819
Query: 247 EGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDT 306
EGT+E+LSNNG LFQKLMENAGKMEEYVEE E D +SKP ANG N+L K++S
Sbjct: 820 EGTYEELSNNGPLFQKLMENAGKMEEYVEE-NGEEEDDQTSSKPVANGNANNLKKDSSSK 878
Query: 307 RKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWL 366
+K+KEGKSVLIKQEERETGVVS+KVL RYK+ALGG WVV+IL LCY LTE RVSSSTWL
Sbjct: 879 KKSKEGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWL 938
Query: 367 SYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILR 426
S WTDQ + KTHGPLFYN IY+LLSFGQVLVTL NSYWLI+SSLYAAKRLHDAML SILR
Sbjct: 939 SEWTDQGTPKTHGPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILR 998
Query: 427 APMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWA 486
APM FFHTNPLGRIINRFAKDLGDIDRNVAVFVNMF+GQ+ QLLSTFVLIGIVST+SLWA
Sbjct: 999 APMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWA 1058
Query: 487 IMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADIN 546
IMPLL+LFY AYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMA+IN
Sbjct: 1059 IMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEIN 1118
Query: 547 GKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLL 606
G+SMD NIR+TLVNM +NRWLAIRLE +GGLMIWLTA+FAV+QNG AENQ AFASTMGLL
Sbjct: 1119 GRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLL 1178
Query: 607 LSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSI 666
LSYALNITSLLTAVLRLASLAENSLNAVERVG YI+LPSEAPLVIE+NRPPPGWPSSGSI
Sbjct: 1179 LSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSI 1238
Query: 667 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 726
KFEDVVLRYRPELPPVLHGLSF I PS+KVGIVGRTGAGKSSMLN LFRIVELERGRILI
Sbjct: 1239 KFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILI 1298
Query: 727 DGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIR 786
DG DI+KFGLMDLRK+LGIIPQ+PVLFSGTVRFNLDPF+EH+DADLWE+LERAHLKD IR
Sbjct: 1299 DGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIR 1358
Query: 787 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR 846
RNSLGLDA+VSEAGENFSVGQRQLLSL+RALLRRSKILVLDEATAAVDVRTDALIQKTIR
Sbjct: 1359 RNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIR 1418
Query: 847 EEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAAN 906
EEFKSCTMLIIAHRLNTIIDCDRIL+LD+GRV+E+DTPE LLSNEGS+FSKMVQSTGAAN
Sbjct: 1419 EEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTGAAN 1478
Query: 907 AQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLEV 966
AQYLRSLV GG+ + REE+K +DGQR+WLASSRWAAAAQ+ALAVSLTSS NDLQ LE+
Sbjct: 1479 AQYLRSLVFGGDEDRLAREESKALDGQRKWLASSRWAAAAQFALAVSLTSSQNDLQSLEI 1538
Query: 967 EDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLSVMSRL 1026
ED+N+IL+KTKDAV+TLQ VLEGKHDKEI+ESLNQ +V DGWWS+LYRM+EGL+VMSRL
Sbjct: 1539 EDENSILEKTKDAVITLQSVLEGKHDKEIDESLNQRQVPRDGWWSSLYRMVEGLAVMSRL 1598
Query: 1027 ARNRLHQSDYDLEERSIDWDHVEM 1050
ARNR+ QSD++ E +SIDWD+VEM
Sbjct: 1599 ARNRMQQSDHNFEGKSIDWDNVEM 1622
|
Length = 1622 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 1563 bits (4049), Expect = 0.0
Identities = 686/909 (75%), Positives = 784/909 (86%), Gaps = 4/909 (0%)
Query: 7 QVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLD 66
QVVNANVSL+R+EE LL+EE+IL NPPL G PAISI+NGYFSWDSK +PTL +INL+
Sbjct: 580 QVVNANVSLQRIEELLLSEERILAQNPPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLE 639
Query: 67 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNI 126
IPVGSLVAIVGGTGEGKTSLISAMLGEL +S VIRG+VAYVPQVSWIFNATVR+NI
Sbjct: 640 IPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENI 699
Query: 127 LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 186
LFGS FE RY +AIDVT+LQHDLDLLPG D+TEIGERGVNISGGQKQRVSMARAVYSNS
Sbjct: 700 LFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNS 759
Query: 187 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKE 246
D++IFDDPLSALDAHV QVFD C++ EL GKTRVLVTNQLHFL +DRIILV EGM+KE
Sbjct: 760 DIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKE 819
Query: 247 EGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDT 306
EGTF +LS +G LF+KLMENAGKM+ E + E + + V + T
Sbjct: 820 EGTFAELSKSGSLFKKLMENAGKMDATQEVNTNDENILKLGPTVTID-VSE---RNLGST 875
Query: 307 RKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWL 366
++ K G+SVL+KQEERETG++S+ VL RY A+GGLWVV+ILL+CY TE LRVSSSTWL
Sbjct: 876 KQGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWL 935
Query: 367 SYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILR 426
S WTDQS+ K++ P FY +Y+LL FGQV VT NS+WLI SSL+AAKRLHDAML+SILR
Sbjct: 936 SIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILR 995
Query: 427 APMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWA 486
APM+FFHTNP GR+INRF+KD+GDIDRNVA +NMFM Q+ QLLSTF LIG VST+SLWA
Sbjct: 996 APMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWA 1055
Query: 487 IMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADIN 546
IMPLL+LFYAAYLYYQST+REV+RLDS+TRSP+YAQFGEALNGLS+IRAYKAYDRMA IN
Sbjct: 1056 IMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKIN 1115
Query: 547 GKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLL 606
GKSMD NIR+TL N +NRWL IRLE +GG+MIWLTATFAV++NG+AENQ FASTMGLL
Sbjct: 1116 GKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLL 1175
Query: 607 LSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSI 666
LSY LNIT+LL+ VLR AS AENSLN+VERVGNYI+LPSEA +IE+NRP GWPS GSI
Sbjct: 1176 LSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSI 1235
Query: 667 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 726
KFEDV LRYRP LPPVLHGLSF + PS+KVG+VGRTGAGKSSMLN LFRIVELE+GRI+I
Sbjct: 1236 KFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMI 1295
Query: 727 DGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIR 786
D D+AKFGL DLR++L IIPQSPVLFSGTVRFN+DPFSEH+DADLWEALERAH+KD I
Sbjct: 1296 DDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVID 1355
Query: 787 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR 846
RN GLDA+VSE GENFSVGQRQLLSL+RALLRRSKILVLDEATA+VDVRTD+LIQ+TIR
Sbjct: 1356 RNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIR 1415
Query: 847 EEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAAN 906
EEFKSCTML+IAHRLNTIIDCD+IL+L SG+VLEYD+P+ELLS + S+F +MV STG AN
Sbjct: 1416 EEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGPAN 1475
Query: 907 AQYLRSLVL 915
AQYL +LV
Sbjct: 1476 AQYLSNLVF 1484
|
Length = 1495 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 781 bits (2018), Expect = 0.0
Identities = 382/933 (40%), Positives = 561/933 (60%), Gaps = 48/933 (5%)
Query: 8 VVNANVSLKRMEEFLLAEEKILLPNP----PLTSGLP-AISIRNGYFSWDSKAERPTLLN 62
+V A+VSLKR+ FL EE L P+ + G +I++ N F+W ++ PTL
Sbjct: 600 IVQASVSLKRLRIFLSHEE--LEPDSIERRTIKPGEGNSITVHNATFTW-ARDLPPTLNG 656
Query: 63 INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATV 122
I IP G+LVA+VG G GK+SL+SA+L E+ V + ++G+VAYVPQ +WI N ++
Sbjct: 657 ITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV-EGHVHMKGSVAYVPQQAWIQNDSL 715
Query: 123 RDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 182
R+NILFG A Y++ ++ +L DL++LP GD TEIGE+GVN+SGGQKQRVS+ARAV
Sbjct: 716 RENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAV 775
Query: 183 YSNSDVFIFDDPLSALDAHVGRQVFDRCI--RGELSGKTRVLVTNQLHFLSQVDRIILVH 240
YSN+D+++FDDPLSA+DAHVG+ +F+ I G L KTR+LVT+ + +L QVD II++
Sbjct: 776 YSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMS 835
Query: 241 EGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDG---ETVDNKTSKPAANG--- 294
G + E G++++L F + + E+ ++ + + K +K NG
Sbjct: 836 GGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLV 895
Query: 295 ---VDNDLPKEASDTRKTKEGKS-------------------VLIKQEERETGVVSFKVL 332
V L ++ S + +S L++ ++ +TG V V
Sbjct: 896 TDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVY 955
Query: 333 SRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSL--KTHGPLFYNTIYSLL 390
Y A+G L++ + + + ++S+ WLS WTD + + ++Y L
Sbjct: 956 WDYMKAIG-LFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGAL 1014
Query: 391 SFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGD 450
Q S + I + A++ LH +LH+ LR+PM FF P G ++NRF+K+L
Sbjct: 1015 GILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDT 1074
Query: 451 IDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKR 510
+D + + MFMG + ++ ++I + + ++ I PL LL++ +Y +++R++KR
Sbjct: 1075 VDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKR 1134
Query: 511 LDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIR 570
L+S++RSPVY+ F E L G+S IRA++ +R + +D+N + ++ ANRWLA+R
Sbjct: 1135 LESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVR 1194
Query: 571 LEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENS 630
LE VG ++ A FAV+ S A +GL +SY+L +T L ++R++S E +
Sbjct: 1195 LECVGNCIVLFAALFAVISRHSLS-----AGLVGLSVSYSLQVTFYLNWLVRMSSEMETN 1249
Query: 631 LNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTI 690
+ AVER+ Y E EAP I+ PP GWP G ++F + LRYR +L VL ++ TI
Sbjct: 1250 IVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTI 1309
Query: 691 PPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSP 750
+KVGIVGRTGAGKSS+ LFRI E G I+IDG +IAK GL DLR + IIPQ P
Sbjct: 1310 HGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDP 1369
Query: 751 VLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 810
VLFSG++R NLDPFS++SD ++W ALE AHLK + LD + +E GEN SVGQRQL
Sbjct: 1370 VLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQL 1429
Query: 811 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRI 870
+ L+RALLR++KILVLDEATAAVD+ TD LIQ TIR +F+ CT+L IAHRLNTI+D R+
Sbjct: 1430 VCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRV 1489
Query: 871 LLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTG 903
++LD G V E+ P LL G F M + G
Sbjct: 1490 IVLDKGEVAEFGAPSNLLQQRG-IFYSMAKDAG 1521
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 638 bits (1648), Expect = 0.0
Identities = 323/900 (35%), Positives = 493/900 (54%), Gaps = 58/900 (6%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFN 119
L ++++ +P G L ++G TG GK++L+ ++L + +S+ ++AYVPQ +WI N
Sbjct: 676 LRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE-ISEGRVWAERSIAYVPQQAWIMN 734
Query: 120 ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 179
ATVR NILF + AR A+ V+ L+ DL L GG TEIGE+GVN+SGGQK RVS+A
Sbjct: 735 ATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLA 794
Query: 180 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV 239
RAVY+N DV++ DDPLSALDAHVG +V + C G L+GKTRVL T+Q+H + + D ++ +
Sbjct: 795 RAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVAL 854
Query: 240 HEGMVKEEGTFEDL---SNNGELFQKLMENAGKMEEYVE-EKEDGETVDNKTSKPAANGV 295
+G V+ G+ D S L +L EN E + E + +
Sbjct: 855 GDGRVEFSGSSADFMRTSLYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVA 914
Query: 296 DNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLT 355
+ E D L+ +EE+ +G V + Y GGL +L + +T
Sbjct: 915 KQEGNAEGGDGAALDAAAGRLMTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVT 974
Query: 356 ETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKR 415
E + VSS WLS W+ +S + Y + G VL+ + S A +R
Sbjct: 975 ELVTVSSGVWLSMWSTRSFKLS------AATYLYVYLGIVLLGTFSVPLRFFLSYEAMRR 1028
Query: 416 ----LHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLS 471
+H +L S+ R M FF T PLGRI+NRF++D+ +D + M + Q L
Sbjct: 1029 GSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNT----LPMSYLYLLQCLF 1084
Query: 472 TFVLIGIVSTMS----LWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEAL 527
+ +V++ S L A++P L+Y +Y S RE++R+ S+ +SPV+ EAL
Sbjct: 1085 SICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEAL 1144
Query: 528 NGLSTIRAYKAYDRMADINGKSMDK-NIRYTLVNM--GANRWLAIRLEIVGGLMIWLTAT 584
G +TI AY + + +++ + ++ Y+ + ANRWL +R+E + +++ + A
Sbjct: 1145 QGSATI---TAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIAL 1201
Query: 585 FAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYI-EL 643
V+ + + L L+ A+ T+ L ++R + E +N+VER+ Y E+
Sbjct: 1202 IGVIGTMLRATSQEIG-LVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEV 1260
Query: 644 PSEA-----------------------PLVIESNRPPPGWP---SSGSIKFEDVVLRYRP 677
P E +VIE P P +GS+ FE V +RYR
Sbjct: 1261 PHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYRE 1320
Query: 678 ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM 737
LP VL G+SF I P +KVGIVGRTG+GKS++L T R+VE+ G I ++G +I +GL
Sbjct: 1321 GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLR 1380
Query: 738 DLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVS 797
+LR+ +IPQ PVLF GTVR N+DPF E S A++W ALE L++ + S G+D++V
Sbjct: 1381 ELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVL 1440
Query: 798 EAGENFSVGQRQLLSLSRALLRR-SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLI 856
E G N+SVGQRQL+ ++RALL++ S +++DEATA +D D IQ T+ F + T++
Sbjct: 1441 EGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVIT 1500
Query: 857 IAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVLG 916
IAHRL+T+ D+I+++D G V E +P EL+ N S F MV++ G + A+ LV
Sbjct: 1501 IAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALGRSEAKRFLQLVGR 1560
|
Length = 1560 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 392 bits (1010), Expect = e-130
Identities = 152/221 (68%), Positives = 178/221 (80%)
Query: 664 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 723
G I+F++V LRYRP LPPVL +SF+I P +KVGIVGRTG+GKSS+L LFR+VEL G
Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 724 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKD 783
ILIDG DI+K GL DLR + IIPQ PVLFSGT+R NLDPF E+SD +LW+ALER LK+
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKE 120
Query: 784 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 843
+ GLD V E GEN SVGQRQLL L+RALLR+SKILVLDEATA+VD TDALIQK
Sbjct: 121 FVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQK 180
Query: 844 TIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTP 884
TIRE FK CT+L IAHRL+TIID DRIL+LD GRV+E+D+P
Sbjct: 181 TIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 338 bits (868), Expect = e-104
Identities = 172/565 (30%), Positives = 280/565 (49%), Gaps = 13/565 (2%)
Query: 343 WVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANS 402
++L+ +L L+ L + + D L + LL+ ++ S
Sbjct: 14 KLLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRALQS 73
Query: 403 YWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMF 462
Y L + +LR P+ FF G +I+R D+ + V+ + +
Sbjct: 74 YLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLV 133
Query: 463 MGQVSQLLSTFVLIGIVS-TMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYA 521
+ L+ + VL+ +S ++L ++ L LL +R++ R + A
Sbjct: 134 FTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLS-LLARKSRKLSRRVREALGELNA 192
Query: 522 QFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWL 581
+ E+L+G+ I+A+ A DR ++ ++ R L LA + ++ L L
Sbjct: 193 RLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVL 252
Query: 582 TATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYI 641
+ + + Y L + + + + + SL + + A ER+
Sbjct: 253 VLALGGFL---VLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERL---F 306
Query: 642 ELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGR 701
EL E P V + P + GSI+FE+V Y + PVL +SF+I P +KV IVG
Sbjct: 307 ELLDEEPEVEDPPDPLK--DTIGSIEFENVSFSYPGK-KPVLKDISFSIEPGEKVAIVGP 363
Query: 702 TGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL 761
+G+GKS+++ L R+ + G ILIDG DI L LRK +GI+ Q P+LFSGT+R N+
Sbjct: 364 SGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENI 423
Query: 762 DPF-SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 820
+ +D ++ EAL+ A+ + I G D V E G N S GQRQ L+++RALLR
Sbjct: 424 ALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRN 483
Query: 821 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 880
IL+LDEAT+A+D T+ALIQ +++ K T LIIAHRL+TI + DRI++LD+GR++E
Sbjct: 484 PPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVE 543
Query: 881 YDTPEELLSNEGSSFSKMVQSTGAA 905
T EELL+ G ++++ Q+ G A
Sbjct: 544 RGTHEELLAKGG-LYARLYQAQGGA 567
|
Length = 567 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 319 bits (820), Expect = e-102
Identities = 111/204 (54%), Positives = 153/204 (75%), Gaps = 4/204 (1%)
Query: 42 ISIRNGYFSWDSKAER--PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 99
IS+ + F+WDS + TL +INL++P G LVAIVG G GK+SL+SA+LGEL +S
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 100 ASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVT 159
+ +V G++AYV Q WI N T+R+NILFG F+ RYEK I +L+ DL++LP GD+T
Sbjct: 61 SVSVP-GSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLT 119
Query: 160 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GK 218
EIGE+G+N+SGGQKQR+S+ARAVYS++D+++ DDPLSA+DAHVGR +F+ CI G L K
Sbjct: 120 EIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNK 179
Query: 219 TRVLVTNQLHFLSQVDRIILVHEG 242
TR+LVT+QL L D+I+++ G
Sbjct: 180 TRILVTHQLQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 306 bits (786), Expect = 1e-97
Identities = 126/225 (56%), Positives = 158/225 (70%), Gaps = 18/225 (8%)
Query: 660 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL 719
WP G I+ E++ +RY P+LPPVL +SF + +K+GIVGRTGAGKS+++ LFR +E
Sbjct: 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA 60
Query: 720 ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERA 779
E G+I IDG DI+ L DLR L IIPQ P LFSGT+R NLDPF E+SD +++ AL
Sbjct: 61 EEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR-- 118
Query: 780 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 839
VSE G N S GQRQLL L+RALL+R ++LVLDEATA++D TDA
Sbjct: 119 ----------------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDA 162
Query: 840 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTP 884
LIQKTIREEF + T+L IAHRL TIID D+IL++D+G V EYD P
Sbjct: 163 LIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 287 bits (737), Expect = 2e-80
Identities = 183/635 (28%), Positives = 317/635 (49%), Gaps = 48/635 (7%)
Query: 302 EASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVS 361
E S+ ++ K + E ++ RY L VLI L FL E
Sbjct: 826 EISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRNLVFVLIFCLVIFLAEVAASL 885
Query: 362 SSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYW----------------- 404
WL + + S V++T ++Y+
Sbjct: 886 LGLWLITDNPSAPNYVDQQ--HANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGF 943
Query: 405 -----LIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFV 459
L+ + L +KRLH+ MLHS+L+APM +T GRI+NRF KD+ ID + + +
Sbjct: 944 FRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTL 1003
Query: 460 NMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPV 519
F+ +L ++ ++ A +P+ ++F Y+ T++++K+L+S RSP+
Sbjct: 1004 FDFIQLTLIVLGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPI 1063
Query: 520 YAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMI 579
++ +L GL TIRA+ + K+++ + + + RW +R++I+ +
Sbjct: 1064 FSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRIDIIF-VFF 1122
Query: 580 WLTATF-AVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVG 638
++ TF A+ N E + +G++L+ A+NI S L + + + + +V RV
Sbjct: 1123 FIAVTFIAIGTNQDGEGE------VGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVF 1176
Query: 639 NYIELPSEAP--------------LVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLH 684
+I+LP E P LVIE+ WPS G + + + +Y VL
Sbjct: 1177 KFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQ 1236
Query: 685 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 744
LSF++ +VG++GRTG+GKS++L+ L R++ E G I IDG L RK G
Sbjct: 1237 DLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE-GEIQIDGVSWNSVTLQTWRKAFG 1295
Query: 745 IIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFS 804
+IPQ +FSGT R NLDP+ + SD ++W+ E LK I + LD + + G S
Sbjct: 1296 VIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLS 1355
Query: 805 VGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI 864
G +QL+ L+R++L ++KIL+LDE +A +D T +I+KT+++ F +CT+++ HR+ +
Sbjct: 1356 NGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEAL 1415
Query: 865 IDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 899
++C + L+++ V +YD+ ++LL NE S F + +
Sbjct: 1416 LECQQFLVIEGSSVKQYDSIQKLL-NETSLFKQAM 1449
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 274 bits (703), Expect = 2e-79
Identities = 149/523 (28%), Positives = 251/523 (47%), Gaps = 44/523 (8%)
Query: 389 LLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDL 448
L + + L+ L +Y + L +LR P+ +F +G II+R
Sbjct: 202 LAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRV---- 257
Query: 449 GDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLW------AIMPLL-LLFYAAYLYY 501
++++ + + LL + + ++ S A +PL L+
Sbjct: 258 RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLL 317
Query: 502 QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRM----ADINGKSMDKNIRYT 557
+ R++ + + E + G+ T++A A R + K ++ +
Sbjct: 318 RRKTRKLIEESAEQ----QSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTE 373
Query: 558 LVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQE-------AFASTMGLLLSYA 610
+ + N ++ ++ L++W A + E AF G +S
Sbjct: 374 KLALILNTIKSLLQQLSSVLILWFGAILVL-------EGELTLGQLVAFNMLAGYFISPI 426
Query: 611 LNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFED 670
++ L T + A+ER+G+ ++ P E G I+FE+
Sbjct: 427 TRLSQLWTDFQQA-------KVALERLGDILDTPPE---QEGDKTLIHLPKLQGEIEFEN 476
Query: 671 VVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFD 730
V RY P+ PPVL LS IPP +KV IVGR+G+GKS++L L + + ++GRIL+DG D
Sbjct: 477 VSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVD 536
Query: 731 IAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEH-SDADLWEALERAHLKDAIRRNS 789
+ L LR+ +G + Q P LFSG++R N+ + +D ++ EA + A + I
Sbjct: 537 LNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLP 596
Query: 790 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF 849
+G D V E G N S GQRQ L+L+RALL + KIL+LDEAT+A+D T+A+I + + +
Sbjct: 597 MGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL 656
Query: 850 KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 892
+ T++IIAHRL+TI DRI++LD G+++E + EELL+ G
Sbjct: 657 QGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGG 699
|
Length = 709 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 251 bits (642), Expect = 2e-76
Identities = 119/238 (50%), Positives = 165/238 (69%)
Query: 664 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 723
G IK D+ +RY L PVL + I P KVGI GRTG+GKSS+ FR+V++ G+
Sbjct: 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK 77
Query: 724 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKD 783
I+IDG DI+K L LR L II Q P+LFSG++RFNLDP + +D LWEALE A LK+
Sbjct: 78 IVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKN 137
Query: 784 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 843
++ GLDA V+E GENFSVGQRQL L+RA +R+S IL++DEATA++D+ T+ ++QK
Sbjct: 138 MVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQK 197
Query: 844 TIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 901
+ F T++ IAHR++TI+D D +L+L G ++E DTPE LL+ E F+ +V++
Sbjct: 198 VVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVRT 255
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 245 bits (628), Expect = 9e-75
Identities = 97/230 (42%), Positives = 147/230 (63%), Gaps = 2/230 (0%)
Query: 664 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 723
G I+FE+V Y + P VL ++F+I P + V IVG TGAGK++++N L R + ++G+
Sbjct: 1 GEIEFENVNFSYDEKKP-VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQ 59
Query: 724 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLW-EALERAHLK 782
ILIDG DI LR ++G++ Q LFSGT+ N+ ++ + EA + A
Sbjct: 60 ILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAH 119
Query: 783 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 842
D I + G D + E G N S G+RQLL+++RA+LR KIL+LDEAT+ +D T+ LIQ
Sbjct: 120 DFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQ 179
Query: 843 KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 892
+ + + K T +IIAHRL+TI + D+IL+LD G+++E T +ELL+ +G
Sbjct: 180 EALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKKG 229
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 215 bits (550), Expect = 1e-64
Identities = 85/212 (40%), Positives = 117/212 (55%), Gaps = 41/212 (19%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
I+F++V Y PVL +S TI P +KV IVG +G+GKS++L L R+ + G IL
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 785
IDG D+ L LRK + +PQ P LFSGT+R N+
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI------------------------ 96
Query: 786 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 845
S GQRQ ++++RALLR IL+LDEAT+A+D T+ALI + +
Sbjct: 97 -----------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEAL 139
Query: 846 REEFKSCTMLIIAHRLNTIIDCDRILLLDSGR 877
R K T+++IAHRL+TI D DRI++LD GR
Sbjct: 140 RALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 215 bits (551), Expect = 7e-64
Identities = 88/230 (38%), Positives = 142/230 (61%), Gaps = 5/230 (2%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
++F++V RY + PPVL +S IP + V +VG +G+GKS+++N + R +++ GRIL
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLK 782
IDG D+ + L LR+ +G++ Q LF+ TV N+ P + ++ EA A+
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRP--GATREEVEEAARAANAH 118
Query: 783 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 842
+ I G D + E G S GQRQ ++++RALL+ IL+LDEAT+A+D ++ L+Q
Sbjct: 119 EFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQ 178
Query: 843 KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 892
+ K+ T +IAHRL+TI + DRI++L+ G+++E T EELL+ G
Sbjct: 179 AALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGG 228
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 215 bits (549), Expect = 1e-63
Identities = 100/236 (42%), Positives = 152/236 (64%), Gaps = 7/236 (2%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
I+FE+V Y P P VL +SFTIP KV IVG +G+GKS++L LFR ++ G IL
Sbjct: 1 IEFENVTFAYDPGRP-VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSIL 59
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLK 782
IDG DI + L LR+ +G++PQ VLF+ T+ +N+ P + +D ++ EA + A +
Sbjct: 60 IDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRP--DATDEEVIEAAKAAQIH 117
Query: 783 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 842
D I R G D V E G S G++Q ++++RA+L+ IL+LDEAT+A+D T+ IQ
Sbjct: 118 DKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177
Query: 843 KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 898
+R+ K T ++IAHRL+TI++ D+I++L GR++E T EELL +G +++M
Sbjct: 178 AALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELL-AKGGLYAEM 232
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 215 bits (550), Expect = 5e-60
Identities = 129/472 (27%), Positives = 211/472 (44%), Gaps = 52/472 (11%)
Query: 461 MFMGQVSQL-------LSTFVLIGIVSTMSLWAI--------------MPLLLLFYAAYL 499
+ + + QL L L IV + L AI PL+ LF +
Sbjct: 102 LALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMIL-V 160
Query: 500 YYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAD-INGKSMD------K 552
+ K+ ++ R + F + L GL T+RA+ + + I S D
Sbjct: 161 GLAAKDASEKQFSALAR--LSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMS 218
Query: 553 NIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALN 612
+R ++ LE L I L A + + + FA L+L+
Sbjct: 219 VLRIAFLSSAV-------LEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILA---- 267
Query: 613 ITSLLTAVLRLASL---AENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFE 669
+ L S A A +++ +E P P + I E
Sbjct: 268 -PEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPG--SGEKAEVANEPPIEISLE 324
Query: 670 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF 729
++ RY P+ P L L+ TI +VG +GAGKS++LN L + +G I ++G
Sbjct: 325 NLSFRY-PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGI 383
Query: 730 DIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPF-SEHSDADLWEALERAHLKDAIRRN 788
D+ RK + + Q+P LF+GT+R N+ + SD ++ AL++A L + + +
Sbjct: 384 DLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKP 443
Query: 789 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREE 848
GLD + E G S GQ Q L+L+RALL + +L+LDE TA +D T+ +I + ++E
Sbjct: 444 -DGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQEL 502
Query: 849 FKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 900
K T+L+I HRL D DRI++LD+GR++E T EEL +G ++ +++
Sbjct: 503 AKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQG-LYANLLK 553
|
Length = 559 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 195 bits (497), Expect = 7e-57
Identities = 98/220 (44%), Positives = 128/220 (58%), Gaps = 20/220 (9%)
Query: 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL------- 94
+ + NGYFSW S TL NIN+ IP G L IVG G GK+SL+ A+LGE+
Sbjct: 1 VQVTNGYFSWGSGL--ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKV 58
Query: 95 ---------PPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTS 145
P + R +VAY Q W+ NATV +NI FGS F RY+ D S
Sbjct: 59 HWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACS 118
Query: 146 LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 205
LQ D+DLLP GD TEIGERG+N+SGGQ+QR+ +ARA+Y N+++ DDP SALD H+
Sbjct: 119 LQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDH 178
Query: 206 VFDRCIRGELSG--KTRVLVTNQLHFLSQVDRIILVHEGM 243
+ I L +T VLVT++L +L D II + +G
Sbjct: 179 LMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 204 bits (522), Expect = 3e-56
Identities = 137/507 (27%), Positives = 240/507 (47%), Gaps = 38/507 (7%)
Query: 402 SYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNM 461
+Y L S + + M +L P+ FF P G +++R D + + +
Sbjct: 75 TYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQV---ASAATDA 131
Query: 462 FMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYA 521
F+ V + L+ L ++ S W + ++++ KRL I++ +
Sbjct: 132 FIVLVRETLTVIGLFIVLLYYS-WQLTLIVVVMLPVLSILMRRVS--KRLRRISKEIQNS 188
Query: 522 Q------FGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVG 575
E L G ++ + R+ V+ NR LA+++ G
Sbjct: 189 MGQVTTVAEETLQGYRVVKLFGGQAYETR----------RFDAVS-NRNRRLAMKMTSAG 237
Query: 576 GL---MIWLTATFAVVQNGSAENQEAFAS--TMGLLLSYALNITSLLTAVLRLASLA--- 627
+ + L A+ A+ +A A T G ++ + +L+ + L ++
Sbjct: 238 SISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPM 297
Query: 628 ENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLS 687
+ L A E + ++ P E R + G ++F +V RY P L +S
Sbjct: 298 QRGLAAAESLFTLLDSPPEKD---TGTRAIE--RARGDVEFRNVTFRYPGRDRPALDSIS 352
Query: 688 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIP 747
I P + V +VGR+G+GKS+++N + R E + G+IL+DG D+A + L LR+ + ++
Sbjct: 353 LVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVS 412
Query: 748 QSPVLFSGTVRFNL--DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSV 805
Q VLF+ T+ N+ + A++ AL A+ +D + + LGLD + E G S
Sbjct: 413 QDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSG 472
Query: 806 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTII 865
GQRQ L+++RALL+ + IL+LDEAT+A+D ++ L+Q + + T L+IAHRL+TI
Sbjct: 473 GQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIE 532
Query: 866 DCDRILLLDSGRVLEYDTPEELLSNEG 892
DRI+++D GR++E T ELL+ G
Sbjct: 533 KADRIVVMDDGRIVERGTHNELLARNG 559
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 193 bits (493), Expect = 3e-56
Identities = 82/218 (37%), Positives = 129/218 (59%), Gaps = 5/218 (2%)
Query: 664 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 723
G I+F +V Y + P L +S TI +KV I+GR G+GKS++L L + + G
Sbjct: 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 724 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAH 780
+L+DG DI + DLR+ +G +PQ LF GT+R N+ P D + A E A
Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPL--ADDERILRAAELAG 118
Query: 781 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 840
+ D + ++ GLD Q+ E G S GQRQ ++L+RALL IL+LDE T+A+D+ ++
Sbjct: 119 VTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEER 178
Query: 841 IQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRV 878
+++ +R+ T++II HR + + DRI+++DSGR+
Sbjct: 179 LKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 203 bits (519), Expect = 8e-56
Identities = 117/476 (24%), Positives = 214/476 (44%), Gaps = 32/476 (6%)
Query: 438 GRIINRFAKDLGDID----RNVAVFVNMFMGQVSQLLSTFVL--IGIVSTMSLWAIMPLL 491
G ++NR D+ +D R +A V V + T L I + L I+ LL
Sbjct: 115 GDLLNRLVADVDALDNLYLRVIAPAVVAL---VLIAVVTIGLSFFSIPLALLLGLILLLL 171
Query: 492 LLFY--AAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKS 549
LL Y + + R+ + +QF + + G + + + A D +
Sbjct: 172 LLIIPTLFYRAGRKFGAHLA----QGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEAT 227
Query: 550 MDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSY 609
++ L ++ GL++ + + A + + LL+ +
Sbjct: 228 EASWLKAQRKQARFTGLSDAILLLIAGLLV-IGLLLWMAAQVGAGALAQPGAALALLVIF 286
Query: 610 ALNITSLLTAVLRLASLA----ENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGS 665
A L A LA A + + R+ ++ + P V + + +
Sbjct: 287 AA-----LEAFEPLAPGAFQHLGQVIASARRLN---DILDQKPEVTFPDEQTA--TTGQA 336
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
++ +V Y + L + T+ +KV I+GR+G+GKS++L L + ++G I
Sbjct: 337 LELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSIT 396
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEH-SDADLWEALERAHLKDA 784
++G +IA LR+ + ++ Q LFSGT+R NL + SD +LW AL++ L+
Sbjct: 397 LNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKL 456
Query: 785 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 844
+ GL+ + E G S G+R+ L+L+RALL + + +LDE T +D T+ +
Sbjct: 457 LESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLAL 516
Query: 845 IREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 900
+ E + T+L++ HRL + DRI++LD+G+++E T ELL+N G + ++ Q
Sbjct: 517 LFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNG-RYKRLYQ 571
|
Length = 573 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 193 bits (492), Expect = 8e-56
Identities = 100/242 (41%), Positives = 156/242 (64%), Gaps = 13/242 (5%)
Query: 666 IKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 723
I+F++V RY RP++P +L GLS TIPP V +VG +G GKS++++ L R + G
Sbjct: 1 IEFKNVSFRYPSRPDVP-ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE 59
Query: 724 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAH 780
IL+DG DI L LR +G++ Q PVLF GT+ N+ P + +D ++ EA ++A+
Sbjct: 60 ILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKP--DATDEEVEEAAKKAN 117
Query: 781 LKDAIRRNSL--GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 838
+ D I SL G D V E G S GQ+Q ++++RALLR KIL+LDEAT+A+D ++
Sbjct: 118 IHDFI--MSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESE 175
Query: 839 ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 898
L+Q+ + K T ++IAHRL+TI + D I +L +G+V+E T +EL++ +G ++K+
Sbjct: 176 KLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKG-VYAKL 234
Query: 899 VQ 900
V+
Sbjct: 235 VK 236
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 206 bits (525), Expect = 1e-55
Identities = 159/603 (26%), Positives = 283/603 (46%), Gaps = 66/603 (10%)
Query: 319 QEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETL------RVSSSTWLSYWTDQ 372
Q + ET + F++L L + L L E RV L D+
Sbjct: 140 QGQSETADLLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVID--TLG--GDK 195
Query: 373 SSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFF 432
+F+ + S+ S V L + + R+ + + S+LR + FF
Sbjct: 196 GPPALASAIFFMCLLSIASS--VSAGLRGGSFNYTMARINL-RIREDLFRSLLRQDLGFF 252
Query: 433 HTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVS---TMSLWAIMP 489
N G + +R + D + R++++ VN+ + + LL + +S TM +P
Sbjct: 253 DENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLP 312
Query: 490 LLLLFYAAY-LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRA-----------YK 537
L+ L + YQ + E++ +++ ++ A+ EAL+G+ T+R+ +
Sbjct: 313 LVFLAEKVFGKRYQLLSEELQ--EAVAKANQVAE--EALSGMRTVRSFAAEEGEASRFKE 368
Query: 538 AYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQE 597
A + +N + Y ++G L+ V+ G Q
Sbjct: 369 ALEETLQLNKRKALAYAGYLWTT-----------SVLGMLIQ-----VLVLYYGG---QL 409
Query: 598 AFASTM--GLLLSYALNITSLLTAVLRLASLAENSLNAV---ERVGNYIELPSEAPLVIE 652
+ G L+S+ L L AV L+ + + AV E+V Y++ PL
Sbjct: 410 VLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGT 469
Query: 653 SNRPPPGWPSSGSIKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSML 710
P G I+F+DV Y RP++P VL GL+FT+ P + V +VG +G+GKS++
Sbjct: 470 -LAPLN---LEGLIEFQDVSFSYPNRPDVP-VLKGLTFTLHPGEVVALVGPSGSGKSTVA 524
Query: 711 NTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLD-PFSEHSD 769
L + + G++L+DG + ++ L + + ++ Q PVLFSG+VR N+ ++ D
Sbjct: 525 ALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPD 584
Query: 770 ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEA 829
++ A + A+ D I G D +V E G S GQ+Q ++++RAL+R+ ++L+LDEA
Sbjct: 585 EEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEA 644
Query: 830 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 889
T+A+D + L+Q++ S T+L+IAHRL+T+ D+IL+L G V+E T ++L+
Sbjct: 645 TSALDAECEQLLQES--RSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLME 702
Query: 890 NEG 892
++G
Sbjct: 703 DQG 705
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 204 bits (520), Expect = 4e-55
Identities = 139/499 (27%), Positives = 250/499 (50%), Gaps = 44/499 (8%)
Query: 420 MLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIV 479
+ +L P+ +F + +G + R ++L I RN + V LL V + ++
Sbjct: 218 LYRHLLGLPLGYFESRRVGDTVAR-VRELEQI-RNF--LTGSALTVVLDLLFVVVFLAVM 273
Query: 480 ---STMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQ--FGEALNGLSTIR 534
S ++ L+ + ++ R KR++ A E++ G+ TI+
Sbjct: 274 FFYSPTLTGVVIGSLVCYALLSVFVGPILR--KRVEDKFERSAAATSFLVESVTGIETIK 331
Query: 535 AYKAYDRMADINGKSMDKNIR--YTLVNMGANRWLAIRL--EIVGGLMIWLTATFAVVQN 590
A + + + + + + + N+G AI L ++ +++W A +V
Sbjct: 332 ATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAH--LVIG 389
Query: 591 GSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAEN---SLNAVERVGNYIELPSE- 646
G+ + G L+++ + + VLRLA L ++ + A+ER+G+ + P+E
Sbjct: 390 GAL--------SPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEP 441
Query: 647 --APLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGA 704
A L G+I FE++ RY P+ P VL L+ I P + +GIVG +G+
Sbjct: 442 RSAGLAALPEL-------RGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGS 494
Query: 705 GKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL--- 761
GKS++ L R+ + G++L+DG D+A LR+ +G++ Q VLFS ++R N+
Sbjct: 495 GKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALC 554
Query: 762 DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 821
+P + A + A D I G + +V E G N S GQRQ ++++RAL+
Sbjct: 555 NP--GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNP 612
Query: 822 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEY 881
+IL+ DEAT+A+D ++ALI + +RE + T++IIAHRL+T+ CDRI++L+ G++ E
Sbjct: 613 RILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAES 672
Query: 882 DTPEELLSNEGSSFSKMVQ 900
EELL+ ++++ Q
Sbjct: 673 GRHEELLA-LQGLYARLWQ 690
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 199 bits (509), Expect = 1e-53
Identities = 110/381 (28%), Positives = 192/381 (50%), Gaps = 37/381 (9%)
Query: 525 EALNGLSTIRAYKAYDRMA----DINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIW 580
E+L+GL TI+A A R ++ ++ A + ++V ++
Sbjct: 329 ESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIV- 387
Query: 581 LTATFAVVQNGSAENQEAFASTMG------LLLSYAL----NITSLLTAVLRLASLAENS 630
+ + + ++ + TMG +L AL + LLT R + +
Sbjct: 388 VVGVYLI-----SDGE----LTMGGLIACVMLSGRALAPLGQLAGLLT---RY----QQA 431
Query: 631 LNAVERVGNYIELPSEAPLVIESNRPPPGWPS-SGSIKFEDVVLRYRPELPPVLHGLSFT 689
A++ + ++LP E P P G I+F +V Y + P L +S T
Sbjct: 432 KTALQSLDELMQLPVERP----EGTRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLT 487
Query: 690 IPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQS 749
I P +KV I+GR G+GKS++L L + + G +L+DG DI + DLR+ +G +PQ
Sbjct: 488 IRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQD 547
Query: 750 PVLFSGTVRFNLDPFSEH-SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 808
P LF GT+R N+ + + D ++ A E A + + +RR+ GLD Q+ E G + S GQR
Sbjct: 548 PRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQR 607
Query: 809 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCD 868
Q ++L+RALLR IL+LDE T+A+D R++ + ++ T++++ HR + + D
Sbjct: 608 QAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVD 667
Query: 869 RILLLDSGRVLEYDTPEELLS 889
RI+++D+GR++ +++L
Sbjct: 668 RIIVMDNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 194 bits (494), Expect = 3e-53
Identities = 102/245 (41%), Positives = 148/245 (60%), Gaps = 3/245 (1%)
Query: 650 VIESNRPPPGWP-SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSS 708
V ++ PP WP G++ F +V Y P P+L+G+SFTIP V IVG +GAGKS+
Sbjct: 246 VSDAPDAPPLWPVRLGAVAFINVSFAYDPR-RPILNGISFTIPLGKTVAIVGESGAGKST 304
Query: 709 MLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEH- 767
+L LFR ++ G I IDG DI LR+ +GI+PQ VLF+ T+ +N+
Sbjct: 305 ILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDA 364
Query: 768 SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLD 827
+ ++ A E A + D I+ G D V E G S G++Q ++++R +L+ IL+LD
Sbjct: 365 TAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILD 424
Query: 828 EATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEEL 887
EAT+A+D T+ IQ +RE T L+IAHRL+TIID D I++LD+GR++E T EEL
Sbjct: 425 EATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEEL 484
Query: 888 LSNEG 892
L+ G
Sbjct: 485 LAAGG 489
|
Length = 497 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 194 bits (495), Expect = 1e-52
Identities = 143/481 (29%), Positives = 237/481 (49%), Gaps = 41/481 (8%)
Query: 431 FFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVS---TMSLWAI 487
FF N G +++R D + + ++M + + +++ I S T +
Sbjct: 108 FFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLA 167
Query: 488 MPLLLLFYAAYLYYQSTAREVKRL-----DSITRSPVYAQFGEALNGLSTIRAYKAYDRM 542
+PL+LL + R V++L D I + YA GE L + T++A+ D
Sbjct: 168 VPLVLLPILLF------GRRVRKLSRESQDRIADAGSYA--GETLGAIRTVQAFGHEDAE 219
Query: 543 ADINGKSMDKNIRYTLVNMGANRWL-AIRLEIVGG---LMIWLTATFAVVQNGSAENQEA 598
G +++K + L AI + +V G ++W+ A V G
Sbjct: 220 RSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAH--DVIAGKMS---- 273
Query: 599 FASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRP-- 656
A T+G + YA+ + + + + + + A ER+ IEL P + P
Sbjct: 274 -AGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERL---IELLQAEPDIKAPAHPKT 329
Query: 657 PPGWPSSGSIKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF 714
P P G I+FE V Y RP+ P L GL+ T+ P + V +VG +GAGKS++ L
Sbjct: 330 LPV-PLRGEIEFEQVNFAYPARPDQP-ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLL 387
Query: 715 RIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDAD 771
R + + GRIL+DG D+ + +LR + ++PQ PVLF+ +V N+ P + +D +
Sbjct: 388 RFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRP--DATDEE 445
Query: 772 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 831
+ A AH + I G D + E G S GQRQ ++++RA+L+ + IL+LDEAT+
Sbjct: 446 VEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATS 505
Query: 832 AVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNE 891
A+D ++ L+Q+ + K T LIIAHRL T++ DRI+++D GR++ T EL++
Sbjct: 506 ALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKG 565
Query: 892 G 892
G
Sbjct: 566 G 566
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 183 bits (467), Expect = 5e-52
Identities = 83/234 (35%), Positives = 138/234 (58%), Gaps = 5/234 (2%)
Query: 46 NGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR 105
N +FS P L NINL I G ++AI G TG GKTSL+ +LGEL P + I+
Sbjct: 39 NLFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEP---SEGKIK 95
Query: 106 --GTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGE 163
G +++ Q SWI T+++NI+FG +++ RY+ + L+ D+ P D T +GE
Sbjct: 96 HSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGE 155
Query: 164 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLV 223
G+ +SGGQ+ R+S+ARAVY ++D+++ D P LD +++F+ C+ ++ KTR+LV
Sbjct: 156 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILV 215
Query: 224 TNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEK 277
T+++ L + D+I+++HEG GTF +L + F + +++ E+
Sbjct: 216 TSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFSAER 269
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 183 bits (466), Expect = 7e-52
Identities = 88/239 (36%), Positives = 146/239 (61%), Gaps = 2/239 (0%)
Query: 664 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 723
G + +D+ +Y VL +SF+I P +VG++GRTG+GKS++L+ R++ E G
Sbjct: 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GD 59
Query: 724 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKD 783
I IDG L RK G+IPQ +FSGT R NLDP+ + SD ++W+ E LK
Sbjct: 60 IQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKS 119
Query: 784 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 843
I + LD + + G S G +QL+ L+R++L ++KIL+LDE +A +D T +I+K
Sbjct: 120 VIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRK 179
Query: 844 TIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 902
T+++ F CT+++ HR+ +++C R L+++ +V +YD+ ++LL NE S F + + +
Sbjct: 180 TLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLL-NEKSHFKQAISPS 237
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 192 bits (489), Expect = 8e-52
Identities = 98/257 (38%), Positives = 146/257 (56%), Gaps = 7/257 (2%)
Query: 655 RPPPGWPS----SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSML 710
R PPG G+++F+DV Y + +SF P V IVG TGAGKS+++
Sbjct: 320 RDPPGAIDLGRVKGAVEFDDVSFSY-DNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLI 378
Query: 711 NTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEH-SD 769
N L R+ + + GRILIDG DI LR+ + ++ Q LF+ ++ N+ +D
Sbjct: 379 NLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATD 438
Query: 770 ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEA 829
++ A ERA D I R G D V E G S G+RQ L+++RALL+ IL+LDEA
Sbjct: 439 EEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEA 498
Query: 830 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 889
T+A+DV T+A ++ + E K T IIAHRL+T+ + DRIL+ D+GRV+E + +E L
Sbjct: 499 TSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDE-LV 557
Query: 890 NEGSSFSKMVQSTGAAN 906
G F+ ++++ G
Sbjct: 558 ARGGRFAALLRAQGMLQ 574
|
Length = 588 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 180 bits (459), Expect = 2e-51
Identities = 85/230 (36%), Positives = 136/230 (59%), Gaps = 5/230 (2%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
I FE V RY+P+ P +L +S I P + VGIVGR+G+GKS++ + R E GR+L
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDA- 784
+DG D+A LR+ +G++ Q VLF+ ++R N+ + +E A L A
Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIA--LADPGMSMERVIEAAKLAGAH 118
Query: 785 --IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 842
I G D V E G S GQRQ ++++RAL+ +IL+ DEAT+A+D ++ I
Sbjct: 119 DFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178
Query: 843 KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 892
+ + + T++IIAHRL+T+ + DRI++++ GR++E + +ELL+ G
Sbjct: 179 RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENG 228
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 189 bits (483), Expect = 2e-50
Identities = 146/545 (26%), Positives = 249/545 (45%), Gaps = 97/545 (17%)
Query: 391 SFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGD 450
+ G LA S ++ L A+ +LR P+ FF G + +R
Sbjct: 186 AVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRA------ 239
Query: 451 IDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFY--------------- 495
M + Q+ ++LS L ++S ++A++ L L+FY
Sbjct: 240 ----------MGISQIRRILSGSTLTTLLS--GIFALLNLGLMFYYSWKLALVAVALALV 287
Query: 496 -------AAY--LYYQSTAREVK-RLDSITRSPVYAQFGEALNGLSTIRAYKAYDR-MAD 544
+ + E+ ++ +T + +NG+S +R A +R A
Sbjct: 288 AIAVTLVLGLLQVRKERRLLELSGKISGLT--------VQLINGISKLRVAGAENRAFAR 339
Query: 545 INGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMG 604
R L + + + L+ A V+ + + FA+ +
Sbjct: 340 WAK------------LFSRQRKLELSAQRIENLLTVFNAVLPVLTSAAL-----FAAAIS 382
Query: 605 LLLSYALNI----------TSLLTAVLRLASLAENSLNAV---ERVGNYIELPSEAPLVI 651
LL L++ S AV +L++ + L + ER +E E +
Sbjct: 383 LLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPE----V 438
Query: 652 ESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLN 711
+ + PG SG+I+ + V RYRP+ P +L +S I P + V IVG +G+GKS
Sbjct: 439 DEAKTDPG-KLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKS---- 493
Query: 712 TLFRIV----ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEH 767
TL R++ E G + DG D+A + +R+ LG++ Q+ L SG++ N+ +
Sbjct: 494 TLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPL 553
Query: 768 SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLD 827
+ + WEA A L + IR +G+ +SE G S GQRQ L ++RAL+R+ +IL+ D
Sbjct: 554 TLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFD 613
Query: 828 EATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEEL 887
EAT+A+D RT A++ +++ E T ++IAHRL+TI + DRI +LD+GRV++ T +EL
Sbjct: 614 EATSALDNRTQAIVSESL--ERLKVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDEL 671
Query: 888 LSNEG 892
++ EG
Sbjct: 672 MAREG 676
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 189 bits (481), Expect = 6e-50
Identities = 140/570 (24%), Positives = 262/570 (45%), Gaps = 47/570 (8%)
Query: 344 VVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFG-------QVL 396
+++ +++ + + ++ S +L Q + T+ P ++S G Q +
Sbjct: 157 LIVNIVIAAIIVTLISIAGSYYL-----QKIIDTYIPHKMMGTLGIISIGLIIAYIIQQI 211
Query: 397 VTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVA 456
++ + L + + + + + + PM FF T G I++RF ID +
Sbjct: 212 LSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFTDASSIIDALAS 271
Query: 457 VFVNMFMGQVSQLLSTFVLIGIV---STMSLWAIMPLLLLFYAAYLY-----YQSTAREV 508
+++F+ + V++G+ M L+ + L + YA + + +
Sbjct: 272 TILSLFLD-----MWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDA 326
Query: 509 KRLDSITRSPVYAQFGEALNGLSTIRAY----KAYDRMADINGKSMDKNIRYTLVNMGAN 564
+ +++ S + E LNG+ TI++ + Y ++ G ++K+ +Y + G
Sbjct: 327 MQANAVLNSSII----EDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQ 382
Query: 565 RWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLA 624
A+ I+ +++W A + + F + + L+ NI +L L+ A
Sbjct: 383 AIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPK-LQAA 441
Query: 625 SLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLH 684
+A N LN V V SE I + +G I DV Y +L
Sbjct: 442 RVANNRLNEVYLV------DSE---FINKKKRTELNNLNGDIVINDVSYSYGYG-SNILS 491
Query: 685 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 744
+S TI + K IVG +G+GKS++ L + G IL++GF + LR+ +
Sbjct: 492 DISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFIN 551
Query: 745 IIPQSPVLFSGTVRFNLDPFSEH--SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 802
+PQ P +FSG++ NL ++ S ++W A E A +KD I LG ++SE G +
Sbjct: 552 YLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSS 611
Query: 803 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN 862
S GQ+Q ++L+RALL SK+L+LDE+T+ +D T+ I + + T++ +AHRL+
Sbjct: 612 ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLL-NLQDKTIIFVAHRLS 670
Query: 863 TIIDCDRILLLDSGRVLEYDTPEELLSNEG 892
D+I++LD G+++E + +ELL G
Sbjct: 671 VAKQSDKIIVLDHGKIIEQGSHDELLDRNG 700
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 189 bits (481), Expect = 6e-50
Identities = 145/499 (29%), Positives = 229/499 (45%), Gaps = 54/499 (10%)
Query: 420 MLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQ-VSQLLSTFVLIGI 478
L ILR P+ FF G I +R ++ VA F++ GQ + L +L+
Sbjct: 233 FLWHILRLPVRFFAQRHAGDIASRV-----QLNDQVAEFLS---GQLATTALDAVMLVFY 284
Query: 479 VSTMSLW-AIMPLLLLFYAA----YLYYQSTARE--VKRLDSITRSPVYAQFGEALNGLS 531
M L+ ++ L+ + +AA L S R +RL + G A++GL
Sbjct: 285 ALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQ-DAGKLT---GVAISGLQ 340
Query: 532 TIRAYKAYDRMADINGKSMDKNIRYTLVNMG-----ANRWLAIRLEIVGGL--MIWLTAT 584
+I KA +D + + L+N + L + ++ L + L
Sbjct: 341 SIETLKASGLESDFFSRW--AGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVG 398
Query: 585 FAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLA------ENSLNAVERVG 638
V G T+G+L+++ ++S L V L E LN ++ V
Sbjct: 399 GLRVMEGQL--------TIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVL 450
Query: 639 NYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGI 698
P + P SG ++ ++ Y P PP++ S T+ P +V +
Sbjct: 451 RNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVAL 510
Query: 699 VGRTGAGKSSMLNTLFRIV----ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFS 754
VG +G+GKS T+ ++V + G IL DG + L + ++ Q LF
Sbjct: 511 VGGSGSGKS----TIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFE 566
Query: 755 GTVRFNLDPFSEH-SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 813
GTVR NL + DADL A + A + D I G DA+++E G N S GQRQ L +
Sbjct: 567 GTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEI 626
Query: 814 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLL 873
+RAL+R IL+LDEAT+A+D T+ +I +R + CT +I+AHRL+TI DCD I++L
Sbjct: 627 ARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVL 684
Query: 874 DSGRVLEYDTPEELLSNEG 892
+ G+V++ T EEL + G
Sbjct: 685 ERGKVVQRGTHEELWAVGG 703
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 184 bits (469), Expect = 3e-49
Identities = 159/564 (28%), Positives = 271/564 (48%), Gaps = 68/564 (12%)
Query: 360 VSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANS---YWLIISSLYAA--- 413
VS +SY+ D K + PL + + L+ V + L + Y + AA
Sbjct: 40 VSGPLLISYFIDNMVAKGNLPL---GLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGV 96
Query: 414 -KRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLST 472
++L ++ + LR P+ F T P+G++I+R D V ++++ V+ +L +
Sbjct: 97 VQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTND-------TEVIRDLYVTVVATVLRS 149
Query: 473 FVLIG--IVSTMSL-W-------AIMPLLLLFYAAYLYYQST--AREVKR-LDSITRSPV 519
LIG +V+ SL W I P +L+ Y Y ST R V+ L I
Sbjct: 150 AALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRY-STPIVRRVRAYLADINDG-- 206
Query: 520 YAQFGEALNGLSTIRAYKAYDRMADINGKSM-DKNIRYTLVNMGANRW----------LA 568
F E +NG+S I+ ++ R G+ M + + + + M R L
Sbjct: 207 ---FNEVINGMSVIQQFRQQARF----GERMGEASRSHYMARMQTLRLDGFLLRPLLSLF 259
Query: 569 IRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAE 628
L + G LM++ + ++ G AF S +G L + +T+ S+ +
Sbjct: 260 SALILCGLLMLFGFSASGTIEVGVLY---AFISYLGRLNEPLIELTTQ-------QSMLQ 309
Query: 629 NSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSF 688
++ A ERV ++ P + +RP SG I ++V YR + VL ++
Sbjct: 310 QAVVAGERVFELMDGPRQQ--YGNDDRPL----QSGRIDIDNVSFAYRDD-NLVLQNINL 362
Query: 689 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQ 748
++P V +VG TG+GKS++ + L L G I +DG ++ LR+ + ++ Q
Sbjct: 363 SVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQ 422
Query: 749 SPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 808
PV+ + T N+ + S+ +W+ALE L + R GL + E G N SVGQ+
Sbjct: 423 DPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQK 482
Query: 809 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCD 868
QLL+L+R L++ +IL+LDEATA +D T+ IQ+ + + T+++IAHRL+TI++ D
Sbjct: 483 QLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEAD 542
Query: 869 RILLLDSGRVLEYDTPEELLSNEG 892
IL+L G+ +E T ++LL+ +G
Sbjct: 543 TILVLHRGQAVEQGTHQQLLAAQG 566
|
Length = 592 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 177 bits (450), Expect = 3e-47
Identities = 84/231 (36%), Positives = 130/231 (56%), Gaps = 6/231 (2%)
Query: 646 EAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAG 705
+A + + P + S++F V + Y P P L +SFT+PP ++V +VG +GAG
Sbjct: 302 DAAPRPLAGKAPVTAAPAPSLEFSGVSVAY-PGRRPALRPVSFTVPPGERVALVGPSGAG 360
Query: 706 KSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---D 762
KS++LN L V+ G I ++G +A R + +PQ P LF+GT+ N+
Sbjct: 361 KSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLAR 420
Query: 763 PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 822
P + SDA++ EALERA L + + GLD + E G S GQ Q L+L+RA LR +
Sbjct: 421 P--DASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAP 478
Query: 823 ILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLL 873
+L+LDE TA +D T+A + + +R + T+L++ HRL DRI++L
Sbjct: 479 LLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 183 bits (465), Expect = 7e-47
Identities = 85/217 (39%), Positives = 134/217 (61%), Gaps = 1/217 (0%)
Query: 48 YFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT 107
+FS S P L NI+ + G L+A+ G TG GK+SL+ ++GEL P S+ G
Sbjct: 430 FFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEP-SEGKIKHSGR 488
Query: 108 VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN 167
+++ PQ SWI T++DNI+FG +++ RY I L+ D+ L P D T +GE G+
Sbjct: 489 ISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGIT 548
Query: 168 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL 227
+SGGQ+ R+S+ARAVY ++D+++ D P + LD +++F+ C+ +S KTR+LVT++L
Sbjct: 549 LSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKL 608
Query: 228 HFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 264
L + D+I+L+HEG+ GTF +L F L+
Sbjct: 609 EHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLL 645
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 175 bits (445), Expect = 4e-46
Identities = 89/231 (38%), Positives = 136/231 (58%), Gaps = 2/231 (0%)
Query: 664 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 723
G I+F +V Y + P L ++F IP V +VGR+G+GKS++ N L R +++ G
Sbjct: 340 GDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGE 399
Query: 724 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE--HSDADLWEALERAHL 781
IL+DG D+ + L LR + ++ Q+ LF+ T+ N+ +S + EA A+
Sbjct: 400 ILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYA 459
Query: 782 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 841
D I + GLD + E G S GQRQ ++++RALLR S IL+LDEAT+A+D ++ I
Sbjct: 460 MDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 519
Query: 842 QKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 892
Q + E K+ T L+IAHRL+TI D IL+++ G ++E T ELL+ G
Sbjct: 520 QAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNG 570
|
Length = 582 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 158 bits (400), Expect = 1e-43
Identities = 75/218 (34%), Positives = 134/218 (61%), Gaps = 4/218 (1%)
Query: 664 GSIKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 721
G +KF++V Y RP+ VL +SFT+ P + +VG +G+GKS+++ L + +
Sbjct: 10 GIVKFQNVTFAYPTRPDTL-VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG 68
Query: 722 GRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLD-PFSEHSDADLWEALERAH 780
G++L+DG I+++ L + ++ Q PVLF+ +++ N+ S + EA ++AH
Sbjct: 69 GQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAH 128
Query: 781 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 840
I + G D +V E G S GQ+Q ++++RAL+R ++L+LDEAT+A+D ++
Sbjct: 129 AHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQ 188
Query: 841 IQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRV 878
+Q+ + + + T+L+IAHRL+T+ D+IL+LD GR+
Sbjct: 189 VQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 166 bits (422), Expect = 3e-43
Identities = 87/268 (32%), Positives = 140/268 (52%), Gaps = 16/268 (5%)
Query: 11 ANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVG 70
A+ + +R+ E L E ++ P PL + +I N FS+ K +P L +I+ I G
Sbjct: 298 ASAAAERLFELLDEEPEVEDPPDPLKDTIGSIEFENVSFSYPGK--KPVLKDISFSIEPG 355
Query: 71 SLVAIVGGTGEGKTSLISAMLGELPPVS--------DASAVI----RGTVAYVPQVSWIF 118
VAIVG +G GK++LI +L P S D + R + V Q +F
Sbjct: 356 EKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLF 415
Query: 119 NATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 177
+ T+R+NI G E+A+ + + + LP G T +GERGVN+SGGQ+QR++
Sbjct: 416 SGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLA 475
Query: 178 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 237
+ARA+ N + I D+ SALD + D ++ L G+T +++ ++L + DRII
Sbjct: 476 IARALLRNPPILILDEATSALDTETEALIQDA-LKKLLKGRTTLIIAHRLSTIKNADRII 534
Query: 238 LVHEGMVKEEGTFEDLSNNGELFQKLME 265
++ G + E GT E+L G L+ +L +
Sbjct: 535 VLDNGRIVERGTHEELLAKGGLYARLYQ 562
|
Length = 567 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 162 bits (411), Expect = 8e-42
Identities = 88/242 (36%), Positives = 140/242 (57%), Gaps = 3/242 (1%)
Query: 663 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 722
G+++F + + + +SF V IVG TGAGK++++N L R+ + G
Sbjct: 332 KGAVEFRHITFEF-ANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVG 390
Query: 723 RILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEH-SDADLWEALERAHL 781
+ILIDG DI LRK + + Q LF+ ++R N+ E +D +++EA + A
Sbjct: 391 QILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAA 450
Query: 782 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 841
D I + S G D V E G S G+RQ L+++RA+L+ + ILVLDEAT+A+DV T+A +
Sbjct: 451 HDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARV 510
Query: 842 QKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 901
+ I K+ T IIAHRL+T+ + D +L LD GR++E + +E L + F K+++
Sbjct: 511 KNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQE-LIQKDGRFYKLLRR 569
Query: 902 TG 903
+G
Sbjct: 570 SG 571
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 3e-41
Identities = 87/269 (32%), Positives = 143/269 (53%), Gaps = 10/269 (3%)
Query: 631 LNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTI 690
+ + R+ E E S S+ +V Y + PVL GLS I
Sbjct: 308 IASARRINEITEQKPEVTFPTTSTAAAD----QVSLTLNNVSFTYPDQPQPVLKGLSLQI 363
Query: 691 PPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSP 750
+KV ++GRTG GKS++L L R + ++G IL++G IA + LR+ + ++ Q
Sbjct: 364 KAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRV 423
Query: 751 VLFSGTVRFNL---DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 807
LFS T+R NL P SD L E L++ L + + + GL+A + E G S G+
Sbjct: 424 HLFSATLRDNLLLAAP--NASDEALIEVLQQVGL-EKLLEDDKGLNAWLGEGGRQLSGGE 480
Query: 808 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC 867
++ L ++RALL + +L+LDE T +D T+ I + + E ++ T+L+I HRL +
Sbjct: 481 QRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQF 540
Query: 868 DRILLLDSGRVLEYDTPEELLSNEGSSFS 896
DRI ++D+G+++E T +ELL+ +G +
Sbjct: 541 DRICVMDNGQIIEQGTHQELLAQQGRYYQ 569
|
Length = 574 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 159 bits (405), Expect = 5e-41
Identities = 73/244 (29%), Positives = 123/244 (50%), Gaps = 15/244 (6%)
Query: 33 PPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG 92
+ P I I S+ +P L ++NL I G L A+VG +G GK++L++ +LG
Sbjct: 310 KAEVANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLG 369
Query: 93 ELPP------VSDAS------AVIRGTVAYVPQVSWIFNATVRDNILFG-SAFEPARYEK 139
L P V+ R +++V Q ++F T+R+NIL
Sbjct: 370 FLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIA 429
Query: 140 AIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 199
A+D L + G D T IGE G +SGGQ QR+++ARA+ S + + + D+P + LD
Sbjct: 430 ALDQAGLLEFVPKPDGLD-TVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLD 488
Query: 200 AHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGEL 259
A + + + ++ KT +++T++L + DRI+++ G + E+GT E+LS L
Sbjct: 489 AETEQII-LQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGL 547
Query: 260 FQKL 263
+ L
Sbjct: 548 YANL 551
|
Length = 559 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 158 bits (403), Expect = 1e-40
Identities = 69/216 (31%), Positives = 123/216 (56%), Gaps = 7/216 (3%)
Query: 686 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745
L+FT+P ++ +VG +GAGK+S+LN L + +G + I+G ++ + RK L
Sbjct: 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPY-QGSLKINGIELRELDPESWRKHLSW 427
Query: 746 IPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 802
+ Q+P L GT+R N+ +P + SD L +ALE A + + + GLD + +
Sbjct: 428 VGQNPQLPHGTLRDNVLLGNP--DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAG 485
Query: 803 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN 862
SVGQ Q L+L+RALL+ ++L+LDE TA++D ++ L+ + + + T L++ H+L
Sbjct: 486 LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLE 545
Query: 863 TIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 898
+ D+I ++ G++++ E LS G F+ +
Sbjct: 546 DLAQWDQIWVMQDGQIVQQGDYAE-LSQAGGLFATL 580
|
Length = 588 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 3e-40
Identities = 76/268 (28%), Positives = 130/268 (48%), Gaps = 24/268 (8%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
I+ ++ +Y + L G+SF + P + G++G GAGK+++L L +++ G IL
Sbjct: 5 IEVRNLTKKYGGDKT-ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEIL 63
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLD-------PFSEHSDADLWEALE 777
+ G+D+ K +R+ +G +PQ P L+ TVR NL+ E ++ + E LE
Sbjct: 64 VLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLE 122
Query: 778 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 837
L+D + S G +Q LS++ ALL ++L+LDE T+ +D +
Sbjct: 123 LFGLEDKANK-----------KVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPES 171
Query: 838 DALIQKTIREEFKS--CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSS 894
I + +RE K T+L+ H L + CDR+++L+ G+++ TPEEL G
Sbjct: 172 RREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGK 231
Query: 895 FSKMVQSTGAANAQYLRSLVLGGEAENK 922
++ A+ L L L E
Sbjct: 232 GVIELEPERLELAELLEGLKLVKGEEEL 259
|
Length = 293 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 155 bits (393), Expect = 8e-40
Identities = 103/416 (24%), Positives = 180/416 (43%), Gaps = 33/416 (7%)
Query: 456 AVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSIT 515
V + ++ L LI + + PL+ + ++ + + RL
Sbjct: 138 LVVGAAAVAAIAVLSVPAALILAAGLLLAGFVAPLV-----SLRAARAAEQALARL---- 188
Query: 516 RSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEI-- 573
R + AQ +AL+G + + A + + + + T A A+ +
Sbjct: 189 RGELAAQLTDALDGAAELVAS---GALPAALAQVEEADRELTRAERRAAAATALGAALTL 245
Query: 574 -VGGLMIWLTATFAVVQNGSAENQEA---FASTMGLLLSYALNITSLLT-AVLRLASLAE 628
GL + A+ + A A + L L+ A + L A +L +
Sbjct: 246 LAAGLAVLGALWAGG--PAVADGRLAPVTLAVLVLLPLA-AFEAFAALPAAAQQLTRVRA 302
Query: 629 NSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSF 688
A ER+ ++ + +++ D+ Y P PPVL G+S
Sbjct: 303 ----AAERIVEVLDAAGPVAEG-SAPAAGAVGLGKPTLELRDLSAGY-PGAPPVLDGVSL 356
Query: 689 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQ 748
+PP ++V I+G +G+GKS++L TL +++ +G + +DG ++ ++R+ + + Q
Sbjct: 357 DLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQ 416
Query: 749 SPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSV 805
LF TVR NL P + +D +LW ALER L D +R GLD + E G S
Sbjct: 417 DAHLFDTTVRENLRLARP--DATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSG 474
Query: 806 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRL 861
G+RQ L+L+RALL + IL+LDE T +D T + + + T+++I H L
Sbjct: 475 GERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 1e-39
Identities = 58/213 (27%), Positives = 97/213 (45%), Gaps = 55/213 (25%)
Query: 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--- 98
I +N FS+ + +P L +++L I G VAIVG +G GK++L+ +L P S
Sbjct: 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 99 ---------DASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHD 149
+R +AYVPQ ++F+ T+R+NIL
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENIL---------------------- 97
Query: 150 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 209
SGGQ+QR+++ARA+ + + I D+ SALD + +
Sbjct: 98 -------------------SGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEA 138
Query: 210 CIRGELSGKTRVLVTNQLHFLSQVDRIILVHEG 242
+R GKT +++ ++L + DRII++ +G
Sbjct: 139 -LRALAKGKTVIVIAHRLSTIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 2e-39
Identities = 81/240 (33%), Positives = 126/240 (52%), Gaps = 26/240 (10%)
Query: 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 101
I N F++D RP L +++ IP G VAIVG +G GK S I +L VS S
Sbjct: 1 IEFENVTFAYD--PGRPVLKDVSFTIPAGKKVAIVGPSGSGK-STILRLLFRFYDVSSGS 57
Query: 102 AVI-------------RGTVAYVPQVSWIFNATVRDNILFG--SAFEPARYE--KAIDVT 144
+I R + VPQ + +FN T+ NI +G A + E KA +
Sbjct: 58 ILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQI- 116
Query: 145 SLQHDLDL-LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 203
HD + P G T +GERG+ +SGG+KQRV++ARA+ N + + D+ SALD H
Sbjct: 117 ---HDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTE 173
Query: 204 RQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 263
R++ +R G+T +++ ++L + D+II++ +G + E GT E+L G L+ ++
Sbjct: 174 REIQ-AALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEM 232
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 153 bits (390), Expect = 2e-38
Identities = 82/281 (29%), Positives = 143/281 (50%), Gaps = 21/281 (7%)
Query: 2 FVVAWQVVNANVSLKRMEEFLLA--EEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPT 59
+Q A V+L+R+ + L E++ L I N F + + P
Sbjct: 432 LWTDFQ--QAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYG-PDDPPV 488
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDAS-AVIRGT 107
L +++L+IP G VAIVG +G GK++L+ +LG P ++D A +R
Sbjct: 489 LEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQ 548
Query: 108 VAYVPQVSWIFNATVRDNILFGSAF--EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERG 165
V YV Q ++F+ ++R+NI G+ + E A + ++ LP G T +GE G
Sbjct: 549 VGYVLQDPFLFSGSIRENIALGNPEATDEEIIE-AAQLAGAHEFIENLPMGYDTPVGEGG 607
Query: 166 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTN 225
N+SGGQ+QR+++ARA+ S + + D+ SALD + + L G+T +++ +
Sbjct: 608 ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQN-LLQILQGRTVIIIAH 666
Query: 226 QLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 266
+L + DRII++ +G + E+G+ E+L G L+ +L +
Sbjct: 667 RLSTIRSADRIIVLDQGKIVEQGSHEELLAQGGLYARLYQQ 707
|
Length = 709 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 5e-38
Identities = 73/215 (33%), Positives = 118/215 (54%), Gaps = 15/215 (6%)
Query: 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-- 98
I RN FS+ + E P L N++L I G VAI+G G GK++L+ + G P S
Sbjct: 2 RIEFRNVSFSYPN-QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 99 ------DAS----AVIRGTVAYVPQVSWIFNATVRDNILFGSAF-EPARYEKAIDVTSLQ 147
D A +R + YVPQ +F T+RDNI G+ + R +A ++ +
Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVT 120
Query: 148 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 207
++ P G +IGERG +SGGQ+Q V++ARA+ ++ + + D+P SA+D + ++
Sbjct: 121 DFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLK 180
Query: 208 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEG 242
+R +R L KT +++T++ L VDRII++ G
Sbjct: 181 ER-LRQLLGDKTLIIITHRPSLLDLVDRIIVMDSG 214
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 5e-38
Identities = 66/214 (30%), Positives = 105/214 (49%), Gaps = 42/214 (19%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
++ E+V RY PPVL +SF+I P + + I+G +G+GKS++ + ++ GR+
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 785
+DG DI+++ +L +G +PQ LFSG++ N+
Sbjct: 61 LDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI------------------------ 96
Query: 786 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 845
S GQRQ L L+RAL +ILVLDE + +DV + + + I
Sbjct: 97 -----------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAI 139
Query: 846 RE-EFKSCTMLIIAHRLNTIIDCDRILLLDSGRV 878
+ T ++IAHR T+ DRIL+L+ GRV
Sbjct: 140 AALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 1e-37
Identities = 68/227 (29%), Positives = 117/227 (51%), Gaps = 20/227 (8%)
Query: 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----- 96
I N FS+D K +P L +IN I G VAIVG TG GKT+LI+ ++ P
Sbjct: 3 IEFENVNFSYDEK--KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI 60
Query: 97 ------VSDAS-AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHD 149
+ D S +R + V Q +++F+ T+ +NI G A E+ I+
Sbjct: 61 LIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGR--PNATDEEVIEAAKEAGA 118
Query: 150 LDL---LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 206
D LP G T +GE G N+S G++Q +++ARA+ + + I D+ S +D ++
Sbjct: 119 HDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTET-EKL 177
Query: 207 FDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 253
+ + G+T +++ ++L + D+I+++ +G + EEGT ++L
Sbjct: 178 IQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDEL 224
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 1e-35
Identities = 73/238 (30%), Positives = 121/238 (50%), Gaps = 21/238 (8%)
Query: 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 101
+ +N F + P L +I+LDIP G VA+VG +G GK++L++ ++ V
Sbjct: 1 VEFKNVTFRYP-GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVN-LIPRFYDVDSGR 58
Query: 102 AVIRGT-------------VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 148
+I G + V Q ++FN TV +NI +G A E+ + +
Sbjct: 59 ILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGR--PGATREEVEEAARAAN 116
Query: 149 DLDL---LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 205
+ LP G T IGERGV +SGGQ+QR+++ARA+ + + I D+ SALD R
Sbjct: 117 AHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERL 176
Query: 206 VFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 263
V + + +T ++ ++L + DRI+++ +G + E GT E+L G ++ KL
Sbjct: 177 V-QAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 1e-35
Identities = 76/242 (31%), Positives = 122/242 (50%), Gaps = 28/242 (11%)
Query: 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 724
++ E++ Y P+L LSF+IP + GI+G G+GKS++L L +++ + G +
Sbjct: 2 MLEVENLSFGYGG--KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 725 LIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TV-------RF-NLDPFSEHSDADLWEA 775
L+DG DIA +L K L +PQSP G TV R+ +L F S D
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119
Query: 776 LERAHLKDAIRRNSLGLDAQVSEAGENF---SVGQRQLLSLSRALLRRSKILVLDEATAA 832
E L LGL A S G+RQ + ++RAL + + IL+LDE T+
Sbjct: 120 EEALEL--------LGL---EHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSH 168
Query: 833 VDVRTDALIQKTIRE--EFKSCTMLIIAHRLN-TIIDCDRILLLDSGRVLEYDTPEELLS 889
+D+ + + +R+ K T++++ H LN D ++LL G+++ TPEE+L+
Sbjct: 169 LDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228
Query: 890 NE 891
E
Sbjct: 229 EE 230
|
Length = 258 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 2e-35
Identities = 69/244 (28%), Positives = 124/244 (50%), Gaps = 17/244 (6%)
Query: 10 NANVSLKRMEEFLLAEEKILLPNPPLTSG-LPAISIRNGYFSWDSKAERPTLLNINLDIP 68
+ + + + L A + L P+T+ P++ ++ + RP L ++ +P
Sbjct: 289 DGVAAAEALFAVLDAAPRPLAGKAPVTAAPAPSLEFSGVSVAYPGR--RPALRPVSFTVP 346
Query: 69 VGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSW 116
G VA+VG +G GK++L++ +LG + P + AV R +A+VPQ +
Sbjct: 347 PGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPF 406
Query: 117 IFNATVRDNILFG-SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 175
+F T+ +NI A +A++ L + LP G T IGE G +SGGQ QR
Sbjct: 407 LFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQR 466
Query: 176 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDR 235
+++ARA ++ + + D+P + LDA +V + +R G+T +LVT++L + DR
Sbjct: 467 LALARAFLRDAPLLLLDEPTAHLDAETEAEVLEA-LRALAQGRTVLLVTHRLALAALADR 525
Query: 236 IILV 239
I+++
Sbjct: 526 IVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 3e-35
Identities = 74/267 (27%), Positives = 138/267 (51%), Gaps = 19/267 (7%)
Query: 14 SLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLV 73
S +R+ + L + ++ P+ + A+ +RN F++ + + L N NL + G V
Sbjct: 309 SARRLNDILDQKPEVTFPDEQTATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKV 367
Query: 74 AIVGGTGEGKTSLISAMLGELPPVSDA------------SAVIRGTVAYVPQVSWIFNAT 121
AI+G +G GK++L+ + G P + +R T++ + Q +F+ T
Sbjct: 368 AILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGT 427
Query: 122 VRDNILFGSAFEPARYEKAIDV---TSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 178
+RDN+ + A E+ L+ L+ P G T +GE G +SGG+++R+++
Sbjct: 428 LRDNLRLAN--PDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLAL 485
Query: 179 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIIL 238
ARA+ ++ +++ D+P LD RQV + GKT ++VT++L L ++DRII+
Sbjct: 486 ARALLHDAPLWLLDEPTEGLDPITERQVLAL-LFEHAEGKTLLMVTHRLRGLERMDRIIV 544
Query: 239 VHEGMVKEEGTFEDLSNNGELFQKLME 265
+ G + EEGT +L N +++L +
Sbjct: 545 LDNGKIIEEGTHAELLANNGRYKRLYQ 571
|
Length = 573 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 131 bits (333), Expect = 2e-34
Identities = 73/244 (29%), Positives = 125/244 (51%), Gaps = 24/244 (9%)
Query: 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 101
I +N F + S+ + P L ++L IP G VA+VG +G GK++++S + P S
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 102 AV------------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ-- 147
+ +R + V Q +F+ T+ +NI +G A E+ +
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGK--PDATDEEVEEAAKKANI 118
Query: 148 HD-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 206
HD + LP G T +GERG +SGGQKQR+++ARA+ N + + D+ SALDA + V
Sbjct: 119 HDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLV 178
Query: 207 ---FDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 263
DR ++ G+T +++ ++L + D I ++ G V E+GT ++L ++ KL
Sbjct: 179 QEALDRAMK----GRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKL 234
Query: 264 MENA 267
++
Sbjct: 235 VKAQ 238
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 2e-34
Identities = 70/201 (34%), Positives = 110/201 (54%), Gaps = 14/201 (6%)
Query: 55 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA------------SA 102
E P L N++L I G VAI+G G GK++L+ +LG P + A
Sbjct: 476 QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPA 535
Query: 103 VIRGTVAYVPQVSWIFNATVRDNILFGSAF-EPARYEKAIDVTSLQHDLDLLPGGDVTEI 161
+R + YVPQ +F T+RDNI G+ + + +A ++ + + P G +I
Sbjct: 536 DLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQI 595
Query: 162 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRV 221
GERG ++SGGQ+Q V++ARA+ + + + D+P SA+D + DR ++ L+GKT V
Sbjct: 596 GERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDR-LKRWLAGKTLV 654
Query: 222 LVTNQLHFLSQVDRIILVHEG 242
LVT++ L VDRII++ G
Sbjct: 655 LVTHRTSLLDLVDRIIVMDNG 675
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 3e-34
Identities = 98/360 (27%), Positives = 167/360 (46%), Gaps = 37/360 (10%)
Query: 537 KAYDRMADINGK--SMDKNIRYTL--VNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGS 592
A +R +D NG ++ + +R L +G WL I+ EI G+MI
Sbjct: 233 SAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMI------------- 279
Query: 593 AENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIE 652
A + +L AL L A + A S +R+ + A +
Sbjct: 280 -------AGS--ILSGRALAPIDLAIANWKQFVAARQSY---KRLNELLAELPAAAERMP 327
Query: 653 SNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNT 712
P G++ E + + P+L G+SF + + +GI+G +G+GKS++
Sbjct: 328 LPAP------QGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARL 381
Query: 713 LFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDAD- 771
L I G + +DG D+ ++ L + +G +PQ LF GT+ N+ F E +D +
Sbjct: 382 LVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEK 441
Query: 772 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 831
+ EA A + + I R G D ++ E G S GQRQ ++L+RAL ++VLDE +
Sbjct: 442 VIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNS 501
Query: 832 AVDVRTD-ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 890
+D + AL + + + T+++IAHR + + D+IL+L GR+ + EE+L+
Sbjct: 502 NLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561
|
Length = 580 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 1e-33
Identities = 90/298 (30%), Positives = 150/298 (50%), Gaps = 15/298 (5%)
Query: 602 TMGLLLSYALNITSLLTAVLRLASLAENSLNAVER----VGNYIELPSEAPLVIESNRPP 657
T+G L S+ + + ++ +L LA + N VER + +EAP+V + + P
Sbjct: 252 TLGQLTSFVMYLGLMIWPMLALAWM----FNIVERGSAAYSRIRAMLAEAPVVKDGSEPV 307
Query: 658 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV 717
P G + Y P L ++FT+ P +GI G TG+GKS++L+ + R
Sbjct: 308 P--EGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHF 365
Query: 718 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWE 774
++ G I + K L R L ++ Q+P LFS TV N+ P + + ++
Sbjct: 366 DVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRP--DATQQEIEH 423
Query: 775 ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 834
A + D I R G D +V E G S GQ+Q +S++RALL ++IL+LD+A +AVD
Sbjct: 424 VARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVD 483
Query: 835 VRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 892
RT+ I +R+ + T++I AHRL+ + + IL++ G + + ++L G
Sbjct: 484 GRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSG 541
|
Length = 569 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 136 bits (346), Expect = 2e-33
Identities = 67/217 (30%), Positives = 121/217 (55%), Gaps = 13/217 (5%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP----------PVSDAS-AVIRGTVAY 110
+N +P G +A+VG +G GKTSL++A+LG LP + + R +++
Sbjct: 368 PLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSW 427
Query: 111 VPQVSWIFNATVRDNILFG-SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNIS 169
V Q + + T+RDN+L G + ++A++ + L LLP G T IG++ +S
Sbjct: 428 VGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLS 487
Query: 170 GGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHF 229
GQ QR+++ARA+ + + D+P ++LDAH + V + + +T ++VT+QL
Sbjct: 488 VGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVM-QALNAASRRQTTLMVTHQLED 546
Query: 230 LSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 266
L+Q D+I ++ +G + ++G + +LS G LF L+ +
Sbjct: 547 LAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATLLAH 583
|
Length = 588 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 8e-33
Identities = 93/356 (26%), Positives = 161/356 (45%), Gaps = 35/356 (9%)
Query: 537 KAYDRMADINGKS-MDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAEN 595
A DR ++ S + + +LV +G +LAI EI G+MI GS
Sbjct: 219 AASDRAGMLSNLSKYFRIVLQSLV-LGLGAYLAIDGEITPGMMI----------AGS--- 264
Query: 596 QEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNR 655
+L+ AL + S + A +R+ + +
Sbjct: 265 ---------ILVGRALAPIDGAIGGWKQFS---GARQAYKRLNELLANYPSRDPAMPLPE 312
Query: 656 PPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 715
P G + E+V + P L G+SF++ + + I+G +G+GKS++ +
Sbjct: 313 P------EGHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVG 366
Query: 716 IVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDAD-LWE 774
I G + +DG D+ ++ K +G +PQ LF GTV N+ F E++D + + E
Sbjct: 367 IWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIE 426
Query: 775 ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 834
A + A + + I R G D + G S GQRQ ++L+RAL K++VLDE + +D
Sbjct: 427 AAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLD 486
Query: 835 VRTD-ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 889
+ AL + + T+++I HR + + D+IL+L GR+ + +E+L+
Sbjct: 487 EEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 7e-32
Identities = 59/215 (27%), Positives = 101/215 (46%), Gaps = 39/215 (18%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
+ +V Y + VL LS + +K+ ++GR+G+GKS++L L ++ ++G I
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 785
+DG ++ L ++ ++ Q P LF T+R NL
Sbjct: 61 LDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL------------------------ 95
Query: 786 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 845
G FS G+RQ L+L+R LL+ + I++LDE T +D T+ + I
Sbjct: 96 --------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLI 141
Query: 846 REEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 880
E K T++ I H L I D+IL L++G+++
Sbjct: 142 FEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIM 176
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 122 bits (310), Expect = 1e-31
Identities = 64/221 (28%), Positives = 116/221 (52%), Gaps = 20/221 (9%)
Query: 667 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 726
+ +++ Y P L +S TI + V IVG G+GKS++L L ++ G +L+
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 727 DGFDIAKFGLMDLRKILGIIPQSP--VLFSGTVR----FNLDPFSEHSDADLWEALERAH 780
DG D+ K L +LR+ +G++ Q+P F TV F L+ + ++ E +E A
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLG-LPEEEIEERVEEA- 118
Query: 781 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR-TDA 839
L+ +GL+ + S GQ+Q ++++ L IL+LDE TA +D
Sbjct: 119 LEL------VGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRE 172
Query: 840 LIQ--KTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGR 877
L++ K ++ E K T++I+ H L+ +++ DR+++L+ G+
Sbjct: 173 LLELLKKLKAEGK--TIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 119 bits (302), Expect = 5e-31
Identities = 54/216 (25%), Positives = 100/216 (46%), Gaps = 46/216 (21%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
I+ ++ RY L +S T+ + G++G GAGK++++ + +++ + G I
Sbjct: 1 IEVRNLSKRYGK--KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK 58
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDA 784
+ G DI K ++++ +G +P+ P L+ TVR NL
Sbjct: 59 VLGKDIKKEP-EEVKRRIGYLPEEPSLYENLTVRENLK---------------------- 95
Query: 785 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 844
S G +Q L+L++ALL ++L+LDE T+ +D + +
Sbjct: 96 ------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWEL 137
Query: 845 IREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRV 878
+RE K T+L+ +H L CDR+ +L++GR+
Sbjct: 138 LRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 1e-30
Identities = 74/238 (31%), Positives = 122/238 (51%), Gaps = 21/238 (8%)
Query: 42 ISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD- 99
I+ + F + K + P +L NI+L I G +V IVG +G GK++L + P +
Sbjct: 1 ITFEHVRFRY--KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58
Query: 100 -----------ASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ- 147
A +R V V Q + +FN ++RDNI A E+ I+ L
Sbjct: 59 VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNI--ALADPGMSMERVIEAAKLAG 116
Query: 148 -HDLDL-LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 205
HD LP G T +GE+G +SGGQ+QR+++ARA+ N + IFD+ SALD
Sbjct: 117 AHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHA 176
Query: 206 VFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 263
+ R + +G+T +++ ++L + DRII++ +G + E+G+ ++L L+ L
Sbjct: 177 IM-RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYL 233
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 1e-30
Identities = 62/234 (26%), Positives = 115/234 (49%), Gaps = 26/234 (11%)
Query: 666 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 723
++ +++ + + L +SF+I + +G+VG +G+GKS++ + +++ G
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 724 ILIDGFDIAKFG---LMDLRKILGIIPQ------SPVLFSGTVRFNL-DPFSEHSDADLW 773
I+ DG D+ K RK + ++ Q +P + T+ + +P H
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRM---TIGEQIAEPLRIHGKLSKK 118
Query: 774 EALERAHLKDAIRRNSLGLDAQVSEA--GENFSVGQRQLLSLSRALLRRSKILVLDEATA 831
EA + A L + +GL +V E S GQRQ ++++RAL K+L+ DE T+
Sbjct: 119 EARKEAVLLLLVG---VGLPEEVLNRYPHE-LSGGQRQRVAIARALALNPKLLIADEPTS 174
Query: 832 AVDVRTDALIQ---KTIREEFKSCTMLIIAHRLNTI-IDCDRILLLDSGRVLEY 881
A+DV A I K ++EE T+L I H L + DR+ ++ +G+++E
Sbjct: 175 ALDVSVQAQILDLLKKLQEELG-LTLLFITHDLGVVAKIADRVAVMYAGKIVEE 227
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 4e-30
Identities = 64/242 (26%), Positives = 112/242 (46%), Gaps = 33/242 (13%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
I+ E++ + Y PVL +S ++ + ++G GAGKS++L + +++ G I
Sbjct: 5 IEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIK 62
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVL---FSGTVR-----------FNLDPFSEHSDAD 771
I G + K R +G +PQ + F TV+ ++
Sbjct: 63 IFGKPVRKR---RKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK 119
Query: 772 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 831
+ EALER ++D D Q+ E S GQ+Q + L+RAL + +L+LDE
Sbjct: 120 VDEALERVGMEDLR-------DRQIGE----LSGGQKQRVLLARALAQNPDLLLLDEPFT 168
Query: 832 AVDVRTDALIQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889
VDV I ++E + T+L++ H L ++ DR++ L+ ++ PEE+L+
Sbjct: 169 GVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVLT 227
Query: 890 NE 891
E
Sbjct: 228 EE 229
|
Length = 254 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 5e-30
Identities = 74/243 (30%), Positives = 118/243 (48%), Gaps = 30/243 (12%)
Query: 666 IKFEDVVLRY---RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 722
I+ E+V + L +S IP + GI+G +GAGKS++L + + G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 723 RILIDGFDIA---KFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALER 778
+ +DG D+ + L LR+ +G+I Q L S TV N+ LE
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVA-----------FPLEL 110
Query: 779 AHL-KDAI--RRNSL----GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 831
A + K I R L GL + S GQ+Q ++++RAL KIL+ DEAT+
Sbjct: 111 AGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATS 170
Query: 832 AVDVR-TDALIQ--KTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 887
A+D T ++++ K I E T+++I H + + CDR+ +LD GR++E T E+
Sbjct: 171 ALDPETTQSILELLKDINREL-GLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229
Query: 888 LSN 890
+N
Sbjct: 230 FAN 232
|
Length = 339 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 6e-30
Identities = 64/224 (28%), Positives = 117/224 (52%), Gaps = 16/224 (7%)
Query: 57 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA------------SAVI 104
L +I+L I + S IVG +G GK++L ++G S +
Sbjct: 487 SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTL 546
Query: 105 RGTVAYVPQVSWIFNATVRDNILFGS--AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 162
R + Y+PQ +IF+ ++ +N+L G+ A ++ ++ D++ +P G TE+
Sbjct: 547 RQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELS 606
Query: 163 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVL 222
E G +ISGGQKQR+++ARA+ ++S V I D+ S LD +++ + + L KT +
Sbjct: 607 EEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN--LQDKTIIF 664
Query: 223 VTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 266
V ++L Q D+II++ G + E+G+ ++L + + L+ N
Sbjct: 665 VAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASLIHN 708
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 6e-30
Identities = 80/268 (29%), Positives = 132/268 (49%), Gaps = 31/268 (11%)
Query: 7 QVVNANVSLKRMEEFL----LAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLN 62
Q A + KR+ E L + + LP P + ++I ++PTL
Sbjct: 283 QFSGARQAYKRLNELLANYPSRDPAMPLPEPEGHLSVENVTIVP------PGGKKPTLRG 336
Query: 63 INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA----SAVIRG--------TVAY 110
I+ + G +AI+G +G GK++L ++G PP S + A ++ + Y
Sbjct: 337 ISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGY 396
Query: 111 VPQVSWIFNATVRDNIL-FGSAFEPARYEKAIDVTSLQ--HDLDL-LPGGDVTEIGERGV 166
+PQ +F TV +NI FG +P EK I+ L H+L L LP G T IG G
Sbjct: 397 LPQDVELFPGTVAENIARFGENADP---EKIIEAAKLAGVHELILRLPDGYDTVIGPGGA 453
Query: 167 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI-RGELSGKTRVLVTN 225
+SGGQ+QR+++ARA+Y + + + D+P S LD G Q I + G T V++T+
Sbjct: 454 TLSGGQRQRIALARALYGDPKLVVLDEPNSNLDE-EGEQALANAIKALKARGITVVVITH 512
Query: 226 QLHFLSQVDRIILVHEGMVKEEGTFEDL 253
+ L VD+I+++ +G + G +++
Sbjct: 513 RPSLLGCVDKILVLQDGRIARFGERDEV 540
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 7e-30
Identities = 53/213 (24%), Positives = 87/213 (40%), Gaps = 58/213 (27%)
Query: 667 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 726
+ E++ RY L +S T+ + V +VG G+GKS++L + +++ G ILI
Sbjct: 1 EIENLSFRYGG--RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILI 58
Query: 727 DGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIR 786
DG DIAK L
Sbjct: 59 DGKDIAK-----------------------------------------------LPLEEL 71
Query: 787 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR 846
R +G Q S GQRQ ++L+RALL +L+LDE T+ +D + + + +R
Sbjct: 72 RRRIGYVPQ-------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLR 124
Query: 847 EEFKS-CTMLIIAHRLNTIID-CDRILLLDSGR 877
E + T++I+ H DR+++L G+
Sbjct: 125 ELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 8e-30
Identities = 81/265 (30%), Positives = 137/265 (51%), Gaps = 21/265 (7%)
Query: 17 RMEEFLLAEEKILLPNPPLTSGLPA---ISIRNGYFSWDSKAERPTLLNINLDIPVGSLV 73
R+ E L AE I P P T +P I F++ ++ ++P L +NL + G V
Sbjct: 310 RLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETV 369
Query: 74 AIVGGTGEGKTSLISAMLGELPPVSDA------------SAVIRGTVAYVPQVSWIFNAT 121
A+VG +G GK++L +L P S A +R +A VPQ +F A+
Sbjct: 370 ALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAAS 429
Query: 122 VRDNILFGSAFEPARYEKAIDVTSLQHD---LDLLPGGDVTEIGERGVNISGGQKQRVSM 178
V +NI +G A E+ H + LP G T +GERGV +SGGQ+QR+++
Sbjct: 430 VMENIRYGRP--DATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAI 487
Query: 179 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIIL 238
ARA+ ++ + + D+ SALDA Q+ + + + G+T +++ ++L + + DRI++
Sbjct: 488 ARAILKDAPILLLDEATSALDAE-SEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVV 546
Query: 239 VHEGMVKEEGTFEDLSNNGELFQKL 263
+ +G + +GT +L G L+ +L
Sbjct: 547 MDQGRIVAQGTHAELIAKGGLYARL 571
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 9e-30
Identities = 64/218 (29%), Positives = 99/218 (45%), Gaps = 50/218 (22%)
Query: 669 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 728
E++ + Y VL LS +I + VGI+G GAGKS++L TL +++ G IL+DG
Sbjct: 3 ENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDG 60
Query: 729 FDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALER---AHLKDAI 785
D+A +L + + +PQ ALE AHL D
Sbjct: 61 KDLASLSPKELARKIAYVPQ--------------------------ALELLGLAHLAD-- 92
Query: 786 RR-NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 844
R N L S G+RQ + L+RAL + IL+LDE T+ +D+ + +
Sbjct: 93 RPFNEL-------------SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLEL 139
Query: 845 IREEFKSCTMLIIA--HRLNTIID-CDRILLLDSGRVL 879
+R + ++ H LN DR++LL GR++
Sbjct: 140 LRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIV 177
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 124 bits (315), Expect = 1e-29
Identities = 68/269 (25%), Positives = 115/269 (42%), Gaps = 27/269 (10%)
Query: 643 LPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE---------LPPVLHGLSFTIPPS 693
+P I + + ++ RY + +SF +
Sbjct: 258 VPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREG 317
Query: 694 DKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG--FDIAKFGLMDLRKILGIIPQSPV 751
+ +G+VG +G+GKS++ L ++ G I+ DG D+ L LR+ + ++ Q P
Sbjct: 318 ETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPY 377
Query: 752 LF---SGTVRFNL-DPFSEHSDADLWEALER-AHLKDAIRRNSLGLDAQVSEAGENFSVG 806
TV L +P H E R A L + + LD E S G
Sbjct: 378 SSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHE----LSGG 433
Query: 807 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDA----LIQKTIREEFKSCTMLIIAHRLN 862
QRQ ++++RAL K+L+LDE +A+DV A L++ ++EE T L I+H L
Sbjct: 434 QRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKD-LQEELG-LTYLFISHDLA 491
Query: 863 TIID-CDRILLLDSGRVLEYDTPEELLSN 890
+ DR+ ++ GR++E E++ N
Sbjct: 492 VVRYIADRVAVMYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 2e-29
Identities = 70/238 (29%), Positives = 119/238 (50%), Gaps = 27/238 (11%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER---- 721
I+ D+ + Y + L +S IP + ++G +G GKS++L L R+ +L
Sbjct: 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD 58
Query: 722 -GRILIDGFDIAK--FGLMDLRKILGIIPQSPVLFSGTVRFNLD--------PFSEHSDA 770
G +L+DG DI +++LR+ +G++ Q P F G++ N+ E D
Sbjct: 59 EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDE 118
Query: 771 DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 830
+ EAL +A L D ++ L S GQ+Q L L+RAL ++L+LDE T
Sbjct: 119 RVEEALRKAALWDEVKDRLHALG---------LSGGQQQRLCLARALANEPEVLLLDEPT 169
Query: 831 AAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEEL 887
+A+D + A I++ I E K T++I+ H + DR L +GR++E+ E++
Sbjct: 170 SALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 4e-29
Identities = 63/240 (26%), Positives = 122/240 (50%), Gaps = 27/240 (11%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
I+ E++ RY L +S I ++V ++G G+GKS++L L +++ G +L
Sbjct: 4 IEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVL 62
Query: 726 IDGFDI-AKFGLMDLRKILGIIPQSPV--LFSGTVRFNLD------PFSEHS-DADLWEA 775
+DG D ++ L++LR+ +G++ Q+P LF TV + + + EA
Sbjct: 63 VDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEA 122
Query: 776 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 835
LE L++ + R L S GQ+Q ++++ L +IL+LDE TA +D
Sbjct: 123 LELVGLEELLDRPPFNL-----------SGGQKQRVAIAGVLAMGPEILLLDEPTAGLDP 171
Query: 836 RTDALIQKTIRE---EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 891
+ + + +++ E T++I+ H L +++ DR+++LD G++L P E+ ++
Sbjct: 172 KGRRELLELLKKLKEEGGK-TIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230
|
Length = 235 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 8e-29
Identities = 77/234 (32%), Positives = 130/234 (55%), Gaps = 23/234 (9%)
Query: 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM----------- 90
+ RN F + +RP L +I+L I G VA+VG +G GK++L++ +
Sbjct: 331 VEFRNVTFRYPG-RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQI 389
Query: 91 LGELPPVSDAS-AVIRGTVAYVPQVSWIFNATVRDNILFGSAFE--PARYEKAIDVTSLQ 147
L + ++D + A +R VA V Q +FN T+ +NI +G + A E+A+ Q
Sbjct: 390 LLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQ 449
Query: 148 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV- 206
+D LP G T IGE GV +SGGQ+QR+++ARA+ ++ + I D+ SALD R V
Sbjct: 450 DFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQ 509
Query: 207 --FDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL-SNNG 257
+R ++ G+T +++ ++L + + DRI+++ +G + E GT +L + NG
Sbjct: 510 AALERLMQ----GRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNG 559
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 1e-28
Identities = 56/217 (25%), Positives = 102/217 (47%), Gaps = 18/217 (8%)
Query: 666 IKFEDVVLRYRP---ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 722
I ED + E L ++ +P + V IVG G+GKSS+L+ L + ELE+
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSAL--LGELEK- 57
Query: 723 RILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLK 782
G + + + + Q P + +GT+R N+ + + ++ L+
Sbjct: 58 ----------LSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALE 107
Query: 783 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-DALI 841
+ G ++ E G N S GQ+Q +SL+RA+ + I +LD+ +AVD +
Sbjct: 108 PDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIF 167
Query: 842 QKTIREEFKSC-TMLIIAHRLNTIIDCDRILLLDSGR 877
+ I + T +++ H+L + D+I++LD+GR
Sbjct: 168 ENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 1e-28
Identities = 69/224 (30%), Positives = 111/224 (49%), Gaps = 34/224 (15%)
Query: 667 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 726
+ ED+ + Y PVL +SF + P + + IVG GAGKS++L + +++ G I +
Sbjct: 1 EVEDLTVSYGGH--PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV 58
Query: 727 DGFDIAKFGLMDLRKILGIIPQSPVL---FSGTVR-----------FNLDPFSEHSDADL 772
G + K RK +G +PQ + F +VR S+ A +
Sbjct: 59 FGKPLEKE-----RKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKV 113
Query: 773 WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 832
EALER L + R Q+ E S GQ+Q + L+RAL++ +L+LDE A
Sbjct: 114 DEALERVGLSELADR-------QIGEL----SGGQQQRVLLARALVQDPDLLLLDEPFAG 162
Query: 833 VDVRTDALIQKTIRE-EFKSCTMLIIAHRLNTIID-CDRILLLD 874
VD +T I + +RE + T+L++ H L +++ DR+LLL+
Sbjct: 163 VDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLN 206
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 5e-28
Identities = 75/247 (30%), Positives = 119/247 (48%), Gaps = 39/247 (15%)
Query: 666 IKFEDV--VLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LER- 721
I+ ++V V L +S ++P + GI+GR+GAGKS TL R + LER
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKS----TLIRCINGLERP 57
Query: 722 --GRILIDGFDIAKFGLMDLRKI---LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWE-A 775
G +L+DG D+ +LRK +G+I Q FNL S + +
Sbjct: 58 TSGSVLVDGTDLTLLSGKELRKARRRIGMIFQ---------HFNL--LSSRTVFENVALP 106
Query: 776 LERAHLKDAIRR-------NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 828
LE A + A +GL+ + S GQ+Q + ++RAL K+L+ DE
Sbjct: 107 LEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDE 166
Query: 829 ATAAVDVRTD----ALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 883
AT+A+D T AL++ I E T+++I H + + CDR+ +++ G V+E T
Sbjct: 167 ATSALDPETTQSILALLRD-INRELG-LTIVLITHEMEVVKRICDRVAVMEKGEVVEEGT 224
Query: 884 PEELLSN 890
EE+ +N
Sbjct: 225 VEEVFAN 231
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 119 bits (299), Expect = 2e-27
Identities = 75/243 (30%), Positives = 119/243 (48%), Gaps = 29/243 (11%)
Query: 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM---------- 90
AI+ N F + + L N+NLDI G + IVG +G GK++L +
Sbjct: 455 AITFENIRFRYAPDSP-EVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQ 513
Query: 91 -------LGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDV 143
L P +R + V Q + +F+ ++RDNI + P +E I
Sbjct: 514 VLVDGVDLAIADPAW-----LRRQMGVVLQENVLFSRSIRDNIALCNPGAP--FEHVIHA 566
Query: 144 TSLQHDLDL---LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 200
L D LP G TE+GE+G N+SGGQ+QR+++ARA+ N + IFD+ SALD
Sbjct: 567 AKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDY 626
Query: 201 HVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELF 260
+ R +R G+T +++ ++L + DRII++ +G + E G E+L L+
Sbjct: 627 E-SEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLY 685
Query: 261 QKL 263
+L
Sbjct: 686 ARL 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 2e-27
Identities = 64/231 (27%), Positives = 115/231 (49%), Gaps = 16/231 (6%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
I+ + + VL G+ + + + I+G +G+GKS++L + ++ + G +L
Sbjct: 1 IELRGLTKSFGGR--TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVL 58
Query: 726 IDGFDIAKFG---LMDLRKILGIIPQSPVLFSG-TVRFNLD-PFSEHSDADLWEALERAH 780
IDG DI+ L LR+ +G++ QS LF TV N+ P EH+ E E
Sbjct: 59 IDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVL 118
Query: 781 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD-VRTDA 839
K ++GL S G ++ ++L+RAL ++L+ DE TA +D + +
Sbjct: 119 EK----LEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGV 174
Query: 840 LIQ--KTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 887
+ +++++E T +++ H L+T DRI +L G+++ TPEEL
Sbjct: 175 IDDLIRSLKKELG-LTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 1e-26
Identities = 64/231 (27%), Positives = 114/231 (49%), Gaps = 20/231 (8%)
Query: 14 SLKRMEEFLLAEEKILLPNPP----LTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPV 69
+ +R+ E L A + + P + G P + +R+ + P L ++LD+P
Sbjct: 303 AAERIVEVLDAAGPVAEGSAPAAGAVGLGKPTLELRDLSAGYPGAP--PVLDGVSLDLPP 360
Query: 70 GSLVAIVGGTGEGKTSLISAMLGELPP------VSDASA------VIRGTVAYVPQVSWI 117
G VAI+G +G GK++L++ + G L P + +R V+ Q + +
Sbjct: 361 GERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHL 420
Query: 118 FNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 176
F+ TVR+N+ A++ L L LP G T +GE G +SGG++QR+
Sbjct: 421 FDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRL 480
Query: 177 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL 227
++ARA+ +++ + + D+P LDA ++ + LSG+T VL+T+ L
Sbjct: 481 ALARALLADAPILLLDEPTEHLDAETADELL-EDLLAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 2e-26
Identities = 72/252 (28%), Positives = 127/252 (50%), Gaps = 22/252 (8%)
Query: 31 PNPPLTSGLPA------ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKT 84
PN PLT L I ++ FS+ ++ + P L + + G +VA+VG +G GK+
Sbjct: 462 PNIPLTGTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKS 521
Query: 85 SLISAML-------GEL----PPVSDASAV-IRGTVAYVPQVSWIFNATVRDNILFGSAF 132
++ + + G++ P+ + VA V Q +F+ +VR+NI +G
Sbjct: 522 TVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTD 581
Query: 133 EPARYEKAIDVTSLQHD-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIF 191
P A + HD + P G TE+GE+G +SGGQKQR+++ARA+ V I
Sbjct: 582 TPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLIL 641
Query: 192 DDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFE 251
D+ SALDA + + + + +T +L+ ++L + + D+I+++ +G V E GT +
Sbjct: 642 DEATSALDAECEQLLQE---SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHK 698
Query: 252 DLSNNGELFQKL 263
L + ++ L
Sbjct: 699 QLMEDQGCYKHL 710
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 2e-26
Identities = 83/277 (29%), Positives = 134/277 (48%), Gaps = 48/277 (17%)
Query: 6 W-QVVNANVSLKRMEEFL----LAEEKILLPNPP-------LTSGLPAISIRNGYFSWDS 53
W Q V A S KR+ E L A E++ LP P LT+ P
Sbjct: 299 WKQFVAARQSYKRLNELLAELPAAAERMPLPAPQGALSVERLTAAPPG------------ 346
Query: 54 KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA----SAVIRG--- 106
++P L I+ + G + I+G +G GK++L ++G PP S + A +R
Sbjct: 347 -QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDR 405
Query: 107 -----TVAYVPQVSWIFNATVRDNIL-FGSAFEPAR-YE--KAIDVTSLQHDLDL-LPGG 156
+ Y+PQ +F+ T+ +NI FG +P + E + V H+L L LP G
Sbjct: 406 EQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGV----HELILRLPQG 461
Query: 157 DVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG-EL 215
T IGE G +SGGQ+QR+++ARA+Y + + + D+P S LD+ G I +
Sbjct: 462 YDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDS-EGEAALAAAILAAKA 520
Query: 216 SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFED 252
G T V++ ++ L+ VD+I+++ +G + G E+
Sbjct: 521 RGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREE 557
|
Length = 580 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 3e-26
Identities = 63/239 (26%), Positives = 115/239 (48%), Gaps = 42/239 (17%)
Query: 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--- 98
I +R S+ R L ++LD+ G ++AI+G +G GK++L+ ++G L P S
Sbjct: 1 IELRGLTKSFG---GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
Query: 99 -----DASAV-------IRGTVAYVPQVSWIFNA-TVRDNILFG----SAFEPARYEK-- 139
D S + +R + + Q +F++ TV +N+ F + +
Sbjct: 58 LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIV 117
Query: 140 --AIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSA 197
++ L+ DL P +SGG K+RV++ARA+ + ++ ++D+P +
Sbjct: 118 LEKLEAVGLRGAEDLYPA-----------ELSGGMKKRVALARALALDPELLLYDEPTAG 166
Query: 198 LDAHVGRQVFDRCIRG--ELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDL 253
LD + V D IR + G T ++VT+ L + DRI ++++G + EGT E+L
Sbjct: 167 LDP-IASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 4e-26
Identities = 61/250 (24%), Positives = 119/250 (47%), Gaps = 19/250 (7%)
Query: 666 IKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE----L 719
++ E++ + + P + +SF + P + +GIVG +G+GKS++ L ++ +
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 720 ERGRILIDGFDIAKFGLMDLRKILG----IIPQSPV-LFSG--TVRFNLD-PFSEHSDAD 771
G +++DG D+ ++RK+ G +I Q P+ + T+ + H
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGS 125
Query: 772 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 831
EA +RA + + + L + S G RQ + ++ AL + K+L+ DE T
Sbjct: 126 RAEARKRA--VELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTT 183
Query: 832 AVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 888
A+DV T A I +++ +L I H L + + DR++++ G ++E EE+L
Sbjct: 184 ALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEIL 243
Query: 889 SNEGSSFSKM 898
SN +++
Sbjct: 244 SNPQHPYTRG 253
|
Length = 539 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 5e-26
Identities = 80/272 (29%), Positives = 130/272 (47%), Gaps = 25/272 (9%)
Query: 15 LKRMEEFLLAEEKILLPNPPLTSGLPA--------ISIRNGYFSWDSKAERPTLLNINLD 66
L R+++ L LL + + +RN F + S E P + N +L
Sbjct: 443 LNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGY-SPLEPPLIENFSLT 501
Query: 67 IPVGSLVAIVGGTGEGKTS---LISAML----GEL-----PPVSDASAVIRGTVAYVPQV 114
+ G VA+VGG+G GK++ L++ + GE+ P V+ +VA V Q
Sbjct: 502 LQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQD 561
Query: 115 SWIFNATVRDNI-LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 173
++F TVRDN+ L+ A +A ++ + PGG E+ E G N+SGGQ+
Sbjct: 562 IFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQR 621
Query: 174 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV 233
QR+ +ARA+ N + I D+ SALD + + D R G T ++V ++L +
Sbjct: 622 QRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRDC 678
Query: 234 DRIILVHEGMVKEEGTFEDLSNNGELFQKLME 265
D II++ G V + GT E+L G + +L+
Sbjct: 679 DEIIVLERGKVVQRGTHEELWAVGGAYARLIR 710
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 5e-26
Identities = 63/248 (25%), Positives = 112/248 (45%), Gaps = 37/248 (14%)
Query: 39 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS 98
L I N F + + L +++L+I G V ++G G GK++L+ + G L P S
Sbjct: 1 LRMIEAENLSFRY--PGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTS 58
Query: 99 -------------DASAVIRGTVAYVPQV--SWIFNATVRDNILFGSAFEP-------AR 136
+ +R V V Q +F TV D + FG R
Sbjct: 59 GEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEER 118
Query: 137 YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS 196
+A+++ L+ LD P N+SGGQKQRV++A + ++ + D+P +
Sbjct: 119 VAEALELVGLEELLDRPPF-----------NLSGGQKQRVAIAGVLAMGPEILLLDEPTA 167
Query: 197 ALDAHVGRQVFDRCIR-GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLS 254
LD R++ + + E GKT ++VT+ L + + DR++++ +G + +G ++
Sbjct: 168 GLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIF 227
Query: 255 NNGELFQK 262
N+ EL
Sbjct: 228 NDAELLLA 235
|
Length = 235 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 6e-26
Identities = 65/224 (29%), Positives = 107/224 (47%), Gaps = 38/224 (16%)
Query: 43 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS---- 98
++N FS+ RP L +I+L I G V IVG G GK++L+ + G L P S
Sbjct: 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 99 --------DASAVIRGTVAYVPQ--VSWIFNATVRDNILFG------SAFE-PARYEKAI 141
+ +R V V Q F TV + + FG E R E+A+
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEAL 119
Query: 142 DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 201
++ L+ D P +SGGQKQRV++A + + D+ + D+P + LD
Sbjct: 120 ELVGLEGLRDRSPF-----------TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPA 168
Query: 202 VGRQVFDRCIRGEL--SGKTRVLVTNQLHFLSQV-DRIILVHEG 242
R++ + ++ +L GKT ++VT+ L L ++ DR+I++ +G
Sbjct: 169 GRRELLEL-LK-KLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 7e-26
Identities = 70/248 (28%), Positives = 120/248 (48%), Gaps = 43/248 (17%)
Query: 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS- 98
P I + N S+ + RP L +I+L + G + A++G G GK++L+ A+LG L P S
Sbjct: 3 PMIEVENLTVSYGN---RPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSG 59
Query: 99 --------DASAVIRGTVAYVPQ---VSWIFNATVRDNILFG-----------SAFEPAR 136
R + YVPQ V F TV+D +L G + + +
Sbjct: 60 EIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK 119
Query: 137 YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS 196
++A++ ++ D +IGE +SGGQKQRV +ARA+ N D+ + D+P +
Sbjct: 120 VDEALERVGMEDLRD-------RQIGE----LSGGQKQRVLLARALAQNPDLLLLDEPFT 168
Query: 197 ALDAHVGRQVFDRCIRGEL--SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 253
+D G++ ++ EL GKT ++VT+ L + DR+I ++ ++ G E++
Sbjct: 169 GVDVA-GQKEIYDLLK-ELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIA-SGPPEEV 225
Query: 254 SNNGELFQ 261
L +
Sbjct: 226 LTEENLEK 233
|
Length = 254 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 7e-26
Identities = 65/221 (29%), Positives = 112/221 (50%), Gaps = 14/221 (6%)
Query: 666 IKFEDVVLRYRPELPPV--LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 723
I + + R+R V + G+SFT+ P + G++G GAGK++ L L ++E + G
Sbjct: 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61
Query: 724 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLK 782
+DGFD+ K R++ G + S L+ T R NL+ F A L+ L+ L
Sbjct: 62 ATVDGFDVVKEPAEARRRL-GFVSDSTGLYDRLTARENLEYF-----AGLY-GLKGDELT 114
Query: 783 DAIRR--NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 840
+ + LG++ + FS G RQ ++++RAL+ +L+LDE T +DV
Sbjct: 115 ARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRA 174
Query: 841 IQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRVL 879
+++ IR+ +L H + + CDR+++L GRV+
Sbjct: 175 LREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVV 215
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 9e-26
Identities = 43/249 (17%), Positives = 85/249 (34%), Gaps = 6/249 (2%)
Query: 345 VLILLLCYFLTETLRVSSSTWLSYWTDQSSLKT---HGPLFYNTIYSLLSF-GQVLVTLA 400
+LI +L L + L + D L I + Q L+
Sbjct: 1 LLIAILLLILAGATALVFPLLLGRFLDSLIDGNGDERSSLISLAILLIAVGVLQGLLLQG 60
Query: 401 NSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVN 460
+ Y KRL A+L IL PM FF TN +G + +R D+ I + +
Sbjct: 61 SFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLG 120
Query: 461 MFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVY 520
+F ++ ++ F+++ ++ +L L R++ R + +
Sbjct: 121 LFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAG 180
Query: 521 AQFGEALNGLSTIRAYKAYDRMAD-INGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMI 579
+ E+L+G+ T++A+ + + + D +++ L
Sbjct: 181 SVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKK-AITAGLSFGITQLISYLSY 239
Query: 580 WLTATFAVV 588
L F
Sbjct: 240 ALALWFGAY 248
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 1e-25
Identities = 59/222 (26%), Positives = 106/222 (47%), Gaps = 14/222 (6%)
Query: 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS- 98
I +N + P L NI+ I G V IVG TG GK+SL+ A+ + S
Sbjct: 1 GDIEFKNVSLRY-RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSG 59
Query: 99 -------DASAV----IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 147
D S + +R ++ +PQ +F+ T+R N+ + +A++ L+
Sbjct: 60 SILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLK 119
Query: 148 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 207
++ LPGG T + E G N+S GQ+Q + +ARA+ S + + D+ +++D +
Sbjct: 120 EFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQ 179
Query: 208 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 249
+ IR T + + ++L + DRI+++ +G V E +
Sbjct: 180 -KTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 1e-25
Identities = 72/235 (30%), Positives = 123/235 (52%), Gaps = 17/235 (7%)
Query: 34 PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML-- 91
P G ++IR F++ + + P L N+N + G ++ I G TG GK++L+S +
Sbjct: 308 PEGRGELDVNIRQ--FTY-PQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRH 364
Query: 92 -----GELP----PVSDASA-VIRGTVAYVPQVSWIFNATVRDNILFGS-AFEPARYEKA 140
G++ P++ R +A V Q ++F+ TV +NI G E
Sbjct: 365 FDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHV 424
Query: 141 IDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 200
+ S+ D+ LP G TE+GERGV +SGGQKQR+S+ARA+ N+++ I DD LSA+D
Sbjct: 425 ARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDG 484
Query: 201 HVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSN 255
Q+ +R G+T ++ ++L L++ I+++ G + + G + L+
Sbjct: 485 RTEHQIL-HNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQ 538
|
Length = 569 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 2e-25
Identities = 75/230 (32%), Positives = 116/230 (50%), Gaps = 31/230 (13%)
Query: 677 PELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL 736
P L+GLS I D V ++G GAGKS++LN + ++ G+ILIDG D+ K +
Sbjct: 16 PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSV 75
Query: 737 MDLRKILGIIPQSPVLFSG---TVRFNLDPFSEHSDADLWE-------------ALERAH 780
+L + Q P+ + T+ NL L E R+
Sbjct: 76 AKRANLLARVFQDPLAGTAPELTIEENL---------ALAESRGKKRGLSSALNERRRSS 126
Query: 781 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-DA 839
++ + R LGL+ ++S+ S GQRQ LSL A L KIL+LDE TAA+D +T +
Sbjct: 127 FRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEF 186
Query: 840 LIQKT--IREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGR-VLEYDTPE 885
+++ T I EE K T L++ H + +D +R+++L SG+ VL+ E
Sbjct: 187 VMELTAKIVEEHK-LTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGEE 235
|
Length = 263 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 2e-25
Identities = 65/227 (28%), Positives = 109/227 (48%), Gaps = 35/227 (15%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 740
+L G+S T+P + V ++GR GAGK+++L T+ ++ G I DG DI +
Sbjct: 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITG---LPPH 70
Query: 741 KI--LGI--IPQSPVLFSG-TVRFNLD-----PFSEHSDADLWEALER-AHLKDAIRRNS 789
+ GI +P+ +F TV NL A L E LK+ RR
Sbjct: 71 ERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKE--RRKQ 128
Query: 790 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA-----VDVRTDALIQKT 844
L S G++Q+L+++RAL+ R K+L+LDE + V+ +A+ +
Sbjct: 129 L---------AGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAI--RE 177
Query: 845 IREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890
+R+E T+L++ ++ DR +L+ GRV+ T ELL++
Sbjct: 178 LRDE--GVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLAD 222
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 4e-25
Identities = 75/268 (27%), Positives = 138/268 (51%), Gaps = 21/268 (7%)
Query: 14 SLKRMEEFLLAEEKILLP-NPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSL 72
S +R+ E + ++ P + ++++ N F++ +P L ++L I G
Sbjct: 310 SARRINEITEQKPEVTFPTTSTAAADQVSLTLNNVSFTYP-DQPQPVLKGLSLQIKAGEK 368
Query: 73 VAIVGGTGEGKTSLIS-------AMLGEL----PPVSDAS-AVIRGTVAYVPQVSWIFNA 120
VA++G TG GK++L+ GE+ P++D S A +R ++ V Q +F+A
Sbjct: 369 VALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA 428
Query: 121 TVRDNILFGSAFEPARYEKAIDV---TSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 177
T+RDN+L A A E I+V L+ L+ G + +GE G +SGG+++R+
Sbjct: 429 TLRDNLLL--AAPNASDEALIEVLQQVGLEKLLEDDKGLN-AWLGEGGRQLSGGEQRRLG 485
Query: 178 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 237
+ARA+ ++ + + D+P LDA RQ+ + KT +++T++L L Q DRI
Sbjct: 486 IARALLHDAPLLLLDEPTEGLDAETERQIL-ELLAEHAQNKTVLMITHRLTGLEQFDRIC 544
Query: 238 LVHEGMVKEEGTFEDLSNNGELFQKLME 265
++ G + E+GT ++L + +L +
Sbjct: 545 VMDNGQIIEQGTHQELLAQQGRYYQLKQ 572
|
Length = 574 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 5e-25
Identities = 57/216 (26%), Positives = 99/216 (45%), Gaps = 56/216 (25%)
Query: 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--- 98
+ + N F + AE P L N++ I G +AI+G +G GK++L +LG L P S
Sbjct: 1 LEVENVSFRYPG-AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59
Query: 99 --DASAV-------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHD 149
D + + + V Y+PQ +F+ ++ +NIL
Sbjct: 60 RLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENIL---------------------- 97
Query: 150 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 209
SGGQ+QR+ +ARA+Y N + + D+P S LD G + ++
Sbjct: 98 -------------------SGGQRQRLGLARALYGNPRILVLDEPNSHLD-VEGERALNQ 137
Query: 210 CIRG-ELSGKTRVLVTNQLHFLSQVDRIILVHEGMV 244
I + +G TR+++ ++ L+ DRI+++ +G V
Sbjct: 138 AIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 9e-25
Identities = 68/239 (28%), Positives = 117/239 (48%), Gaps = 22/239 (9%)
Query: 665 SIKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 722
+ ++ + Y L+ +S I + +GIVG +G+GKS++ L + + G
Sbjct: 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSG 62
Query: 723 RILIDGFDIA-KFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHL 781
IL+DG +A K + + ++ Q P +L+P L E L L
Sbjct: 63 SILLDGKPLAPKKRAKAFYRPVQMVFQDPYS-------SLNPRRTVGRI-LSEPLRPHGL 114
Query: 782 KDAIRR-----NSLGLDAQVSEAGEN-FSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 835
+ +R + +GL + + S GQRQ ++++RAL+ K+L+LDE T+A+DV
Sbjct: 115 SKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174
Query: 836 RTDALIQ---KTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890
A I +++E T L I+H L + CDRI ++D+G+++E EELLS+
Sbjct: 175 SVQAQILNLLLELKKERG-LTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232
|
Length = 252 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 9e-25
Identities = 58/218 (26%), Positives = 103/218 (47%), Gaps = 46/218 (21%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
++ ++V RY + VL+ +S I + V ++G +G+GKS++L + + E + G IL
Sbjct: 1 LELKNVSKRYGQKT--VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL 58
Query: 726 IDGFDIAK--FGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLK 782
IDG D+ L LR+ +G++ Q LF TV N+
Sbjct: 59 IDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENI--------------------- 97
Query: 783 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 842
+LGL S GQ+Q ++L+RAL +L+LDE T+A+D T ++
Sbjct: 98 ------ALGL-----------SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVR 140
Query: 843 KTIREEFKS--CTMLIIAHRLNTIID-CDRILLLDSGR 877
++ T++++ H L+ DR+++L G+
Sbjct: 141 ALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 2e-24
Identities = 62/240 (25%), Positives = 105/240 (43%), Gaps = 42/240 (17%)
Query: 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 99
+ + N F + +P L +++ IP G + I+G G GK++L+ + G L P S
Sbjct: 1 MMLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSG 57
Query: 100 ------------ASAVIRGTVAYVPQVSWI-FNATVRDNILFG--------SAFEPARYE 138
+ + +AYVPQ F TV + +L G E
Sbjct: 58 EVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEE 117
Query: 139 KAIDVTSLQHDLDLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSA 197
+ L+LL + + +R V+ +SGG++QRV +ARA+ + + + D+P S
Sbjct: 118 IVEEA------LELL---GLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSH 168
Query: 198 LDAHVGRQVFDRCIR-GELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFED 252
LD +V + G T V+V LH L+ D +IL+ +G + +GT E+
Sbjct: 169 LDIAHQIEVLELLRDLNREKGLTVVMV---LHDLNLAARYADHLILLKDGKIVAQGTPEE 225
|
Length = 258 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 2e-24
Identities = 64/226 (28%), Positives = 107/226 (47%), Gaps = 19/226 (8%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL-MDLR 740
++ +S + P + VG++G GAGK+++ N + + G ++ G DI GL
Sbjct: 19 AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDIT--GLPPHRI 76
Query: 741 KILGIIP--QSPVLFSG-TVRFNL---DPFSEHSDADLWEALERAHLKDAIRR-----NS 789
LGI Q LF G TV N+ L R ++A R
Sbjct: 77 ARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEF 136
Query: 790 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR-TDALIQ--KTIR 846
+GL N S GQ++ L ++RAL + K+L+LDE A ++ T+ L + + +R
Sbjct: 137 VGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELR 196
Query: 847 EEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 891
+ T+L+I H + ++ DRI++L+ G V+ TPEE+ +N
Sbjct: 197 DRGGV-TILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNNP 241
|
Length = 250 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 4e-24
Identities = 66/227 (29%), Positives = 110/227 (48%), Gaps = 24/227 (10%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 741
L +SF++ P + G++G GAGK+++ N + + G +L DG DI
Sbjct: 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLP-PHEIA 73
Query: 742 ILGIIP--QSPVLFSG-TVRFNL----------DPFSEHSDADLWEALERAHLKDAIRRN 788
LGI Q P LF TV N+ + + EA ERA + + R
Sbjct: 74 RLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAE--ELLER- 130
Query: 789 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR-TDALIQ--KTI 845
+GL S GQ++ L ++RAL K+L+LDE A ++ T+ L + + +
Sbjct: 131 -VGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIREL 189
Query: 846 REEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 891
RE + T+L++ H ++ ++ DR+ +LD GRV+ TP+E+ +N
Sbjct: 190 RE--RGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNNP 234
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 6e-24
Identities = 64/248 (25%), Positives = 113/248 (45%), Gaps = 38/248 (15%)
Query: 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 724
++ ++V + VL ++ I + V ++G +G GKS++L + + E G I
Sbjct: 3 ELELKNVRKSFGSF--EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI 60
Query: 725 LIDGFDIAKFGLMDLRKILGIIPQSPVLF-SGTVRFNL--------DPFSEHSDADLWEA 775
LIDG D+ R I ++ Q+ L+ TV N+ P +E D + E
Sbjct: 61 LIDGRDVTDLPPEK-RGI-AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEI-DKRVKEV 117
Query: 776 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 835
+ L+ + R L L S GQRQ ++L+RAL+R+ K+ +LDE + +D
Sbjct: 118 AKLLGLEHLLNRKPLQL-----------SGGQRQRVALARALVRKPKVFLLDEPLSNLDA 166
Query: 836 RTDALIQKTIREEFK------SCTMLIIAHRL--NTIIDCDRILLLDSGRVLEYDTPEEL 887
+ ++ +R E K T + + H + DRI++++ GR+ + TP EL
Sbjct: 167 K----LRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLA-DRIVVMNDGRIQQVGTPLEL 221
Query: 888 LSNEGSSF 895
+ F
Sbjct: 222 YERPANLF 229
|
Length = 338 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 7e-24
Identities = 66/244 (27%), Positives = 115/244 (47%), Gaps = 34/244 (13%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
++ E++ Y P L ++ I P + V I+G +GAGKS++L + R+VE G IL
Sbjct: 2 LEVENLSKVY-PNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL 60
Query: 726 IDGFDIAKFGLMDLRKI----------LGIIPQSPVL---------FSGTVRFNLDPFSE 766
++G DI K LRK+ +I + VL + T R L FSE
Sbjct: 61 LEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSE 120
Query: 767 HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVL 826
ALER +GL + + + S GQ+Q ++++RAL ++ +++
Sbjct: 121 EDKERALSALER-----------VGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILA 169
Query: 827 DEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 883
DE A++D +T + ++ + T++I H+++ DRI+ L +G ++
Sbjct: 170 DEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGA 229
Query: 884 PEEL 887
P EL
Sbjct: 230 PSEL 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 8e-24
Identities = 61/255 (23%), Positives = 110/255 (43%), Gaps = 41/255 (16%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----------DASAVIRGTVAY 110
++ ++ G + ++G G GKT+L+ + G L P S A +R + Y
Sbjct: 23 GVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGY 82
Query: 111 VPQVSWIF-NATVRDNILF-------GSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 162
VPQ ++ TVR+N+ F R E+ +++ L+ +
Sbjct: 83 VPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRT------ 136
Query: 163 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS--GKTR 220
+SGG KQR+S+A A+ + ++ I D+P S LD R+ +R EL+ G
Sbjct: 137 -----LSGGMKQRLSIALALLHDPELLILDEPTSGLDPE-SRREIWELLR-ELAKEGGVT 189
Query: 221 VLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEE 276
+L++ H L + DR+I++++G + EGT E+L + ++E E
Sbjct: 190 ILLST--HILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIELEPERLEL-AEL 246
Query: 277 KEDGETVDNKTSKPA 291
E + V +
Sbjct: 247 LEGLKLVKGEEELAE 261
|
Length = 293 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 9e-24
Identities = 69/238 (28%), Positives = 126/238 (52%), Gaps = 21/238 (8%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
I+ V + +L G+ +P + + I+G +G+GKS++L + ++ ++G IL
Sbjct: 9 IEVRGVTKSF--GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEIL 66
Query: 726 IDGFDIAKF---GLMDLRKILGIIPQSPVLFSG-TVRFNLD-PFSEHSDADLWEALERAH 780
IDG DI + L ++RK +G++ Q LFS TV N+ P EH+ E
Sbjct: 67 IDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVL 126
Query: 781 LKDAIRRNSLGLDAQVSEAGENF----SVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 836
+K +GL A + + S G R+ ++L+RA+ ++L LDE T+ +D
Sbjct: 127 MK----LELVGLRG---AAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPI 179
Query: 837 TDALIQKTIREEFKS--CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 891
+ +I + IRE + T++++ H L++++ DR+ +L G+V+ TPEELL+++
Sbjct: 180 SAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASD 237
|
Length = 263 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-23
Identities = 73/232 (31%), Positives = 118/232 (50%), Gaps = 28/232 (12%)
Query: 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 101
I RN F++ K E P L NIN IP G VA+VG +G GK S I+ +L + +
Sbjct: 342 IEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGK-STIANLLTRFYDIDEGE 399
Query: 102 -------------AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 148
A +R VA V Q +FN T+ +NI + + +R + + + +
Sbjct: 400 ILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQ-IEEAARMAY 458
Query: 149 DLDL---LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 205
+D + G T IGE GV +SGGQ+QR+++ARA+ +S + I D+ SALD
Sbjct: 459 AMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES--- 515
Query: 206 VFDRCIRGELS----GKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 253
+R I+ L +T +++ ++L + + D I++V +G + E GT +L
Sbjct: 516 --ERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAEL 565
|
Length = 582 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 1e-23
Identities = 56/214 (26%), Positives = 106/214 (49%), Gaps = 16/214 (7%)
Query: 45 RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI 104
+N F++ ++ + L +++ + G + A+VG +G GK++++ A+L ++
Sbjct: 15 QNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVV-ALLENFYQPQGGQVLL 73
Query: 105 RG-------------TVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHD-L 150
G V+ V Q +F +++DNI +G K + H +
Sbjct: 74 DGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFI 133
Query: 151 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 210
L G TE+GE+G +SGGQKQRV++ARA+ N V I D+ SALDA Q +
Sbjct: 134 SELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAE-SEQQVQQA 192
Query: 211 IRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMV 244
+ +T +++ ++L + + D+I+++ G +
Sbjct: 193 LYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 1e-23
Identities = 75/273 (27%), Positives = 138/273 (50%), Gaps = 27/273 (9%)
Query: 17 RMEEFLLAEEKILLPNPPLTSG-LP----AISIRNGYFSWDSKAERPTLLNINLDIPVGS 71
++E+F E+ + P + LP A+ R+ F + + ++ + +++ + G
Sbjct: 305 KLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANSSQ--GVFDVSFEAKAGQ 362
Query: 72 LVAIVGGTGEGKTSLISAMLGELPPVS--------DASAV----IRGTVAYVPQVSWIFN 119
VAIVG TG GKT+LI+ + P D + V +R ++A V Q + +FN
Sbjct: 363 TVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFN 422
Query: 120 ATVRDNILFG--SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 177
++R+NI G A + YE A + L G D T +GERG +SGG++QR++
Sbjct: 423 RSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYD-TLVGERGNRLSGGERQRLA 481
Query: 178 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDR--CIRGELSGKTRVLVTNQLHFLSQVDR 235
+ARA+ N+ + + D+ SALD +V + +R +T ++ ++L + D
Sbjct: 482 IARAILKNAPILVLDEATSALDVETEARVKNAIDALR---KNRTTFIIAHRLSTVRNADL 538
Query: 236 IILVHEGMVKEEGTFEDLSNNGELFQKLMENAG 268
++ + +G + E+G+F++L F KL+ +G
Sbjct: 539 VLFLDQGRLIEKGSFQELIQKDGRFYKLLRRSG 571
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 1e-23
Identities = 66/237 (27%), Positives = 124/237 (52%), Gaps = 22/237 (9%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
IK E+V Y L +SF I + V I+G G+GKS++ L +++ + G I
Sbjct: 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIK 67
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSP-VLFSG-TVRFNLDPFSEHSDADLWEALE-----R 778
IDG I+K L ++RK +GII Q+P F G TV + D+ LE
Sbjct: 68 IDGITISKENLKEIRKKIGIIFQNPDNQFIGATV-----------EDDIAFGLENKKVPP 116
Query: 779 AHLKDAIRRNS--LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 836
+KD I + +G++ + + +N S GQ+Q ++++ L +I++ DE+T+ +D +
Sbjct: 117 KKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPK 176
Query: 837 TDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNE 891
I+K + + + + T++ I H ++ I D++++ G+++ P+E+L+N+
Sbjct: 177 GKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNK 233
|
Length = 271 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.5 bits (249), Expect = 2e-23
Identities = 68/225 (30%), Positives = 111/225 (49%), Gaps = 27/225 (12%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL- 739
L G+S + + V ++GR GAGK+++L T+ +V GRI+ DG DI +
Sbjct: 17 QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERA 76
Query: 740 RKILGIIPQSPVLFSG-TVRFNL------DPFSEHSDADLWEALER-AHLKDAIRRNSLG 791
R + +P+ +F TV NL E + DL E E LK+ RRN
Sbjct: 77 RLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKE--RRNQR- 133
Query: 792 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA--AVDVRTDALIQKTIREEF 849
AG S G++Q+L+++RAL+ R K+L+LDE + A + + I + I+E
Sbjct: 134 -------AG-TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEE--IFEAIKELR 183
Query: 850 KSCTM--LIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 891
K M L++ ++ DR +L++GR++ T ELL++
Sbjct: 184 KEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228
|
Length = 237 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 3e-23
Identities = 64/244 (26%), Positives = 114/244 (46%), Gaps = 34/244 (13%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
I+ E++ Y P L +S +I P + V ++G +GAGKS++L L +VE G +L
Sbjct: 1 IEVENLSKTY-PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL 59
Query: 726 IDGFDIAKFGLMDLRKI----------LGIIPQSPVL---------FSGTVRFNLDPFSE 766
IDG DI K LR++ +I + VL T R F +
Sbjct: 60 IDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPK 119
Query: 767 HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVL 826
ALER +GL + + + S GQ+Q ++++RAL+++ K+++
Sbjct: 120 EEKQRALAALER-----------VGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILA 168
Query: 827 DEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 883
DE A++D + + ++ + T+++ H+++ + DRI+ L GR++
Sbjct: 169 DEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGP 228
Query: 884 PEEL 887
P EL
Sbjct: 229 PAEL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 98.7 bits (247), Expect = 3e-23
Identities = 61/231 (26%), Positives = 103/231 (44%), Gaps = 21/231 (9%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
++ ++ Y+ P + LS + + G++G GAGK++ L L + G
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLW-EALERAHLKD 783
I+G+ I R+ LG PQ LF TVR EH L A + K
Sbjct: 61 INGYSIRT-DRKAARQSLGYCPQFDALFDELTVR-------EH----LRFYARLKGLPKS 108
Query: 784 AIRRNS------LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 837
I+ LGL + ++ S G ++ LSL+ AL+ +L+LDE T+ +D +
Sbjct: 109 EIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPAS 168
Query: 838 DALIQKTIREEFKSCTMLIIAHRLNTI-IDCDRILLLDSGRVLEYDTPEEL 887
I I E K ++++ H ++ CDRI ++ G++ +P+EL
Sbjct: 169 RRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 98.3 bits (246), Expect = 4e-23
Identities = 61/229 (26%), Positives = 102/229 (44%), Gaps = 27/229 (11%)
Query: 666 IKFEDVVLRYRPELP--PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 723
I+ +++ Y L G+S +I + V IVG +G+GKS++LN L + G
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 724 ILIDGFDIAKFGLMDLRKI----LGIIPQSPVLFSG-TVRFNLD-------PFSEHSDAD 771
+ +DG DI+K +L +G + QS L T N++ +
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRER 120
Query: 772 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 831
E LER L D + SE S GQ+Q ++++RAL KI++ DE T
Sbjct: 121 AEELLERVGLGDRLNHY-------PSE----LSGGQQQRVAIARALANDPKIILADEPTG 169
Query: 832 AVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRV 878
+D T + + +RE + T++++ H DRI+ L G++
Sbjct: 170 NLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 5e-23
Identities = 70/232 (30%), Positives = 113/232 (48%), Gaps = 17/232 (7%)
Query: 34 PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGE 93
PL SG I I N F++ + L NINL +P VA+VG TG GK++L S ++G
Sbjct: 335 PLQSG--RIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGY 390
Query: 94 LP-----------PVSDAS-AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAI 141
P P+S S +V+R VA V Q + T N+ G + +A+
Sbjct: 391 YPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQAL 450
Query: 142 DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 201
+ L LP G T +GE+G N+S GQKQ +++AR + + I D+ + +D+
Sbjct: 451 ETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSG 510
Query: 202 VGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 253
Q + + T V++ ++L + + D I+++H G E+GT + L
Sbjct: 511 T-EQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQL 561
|
Length = 592 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 5e-23
Identities = 85/339 (25%), Positives = 141/339 (41%), Gaps = 57/339 (16%)
Query: 539 YDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIV-------------GGLMIWLTATF 585
+D + + + IR T +G WL++ L I+ GGLM
Sbjct: 275 FDAVLGNWRRLVRAQIRLTWFQLGYG-WLSVVLPILIAAPRYFSGQITFGGLM------- 326
Query: 586 AVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPS 645
Q A Q S++ + I +LRLA +L A + + +
Sbjct: 327 ---QAVGAFGQ--VHSSLSWFIDNYDAIADWRATLLRLAEFR-QALEAAQM--DTEKPAR 378
Query: 646 EAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAG 705
+ + G I E++ LR P+ +L L+F + P +++ I G +GAG
Sbjct: 379 TGRRIDFDDNADHG------ITLENLSLR-TPDGQTLLSELNFEVRPGERLLITGESGAG 431
Query: 706 KSSMLNTLFRIVELERGRILI-DGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL--- 761
K+S+L L + GRI + + +PQ P L GT+R L
Sbjct: 432 KTSLLRALAGLWPWGSGRISMPADSALL------------FLPQRPYLPQGTLREALCYP 479
Query: 762 DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 821
+ + SDA+L L + L D R LD + S G++Q L+ +R LL +
Sbjct: 480 NAAPDFSDAELVAVLHKVGLGDLAER----LD-EEDRWDRVLSGGEQQRLAFARLLLHKP 534
Query: 822 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHR 860
K + LDEAT+A+D T+ + + ++EE T++ + HR
Sbjct: 535 KWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHR 573
|
Length = 604 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 7e-23
Identities = 65/238 (27%), Positives = 106/238 (44%), Gaps = 40/238 (16%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV-----ELERGRILIDGFDIAKFG 735
+ G+SF + + +GIVG +G+GKS + + ++ + G IL DG D+
Sbjct: 19 KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLS 78
Query: 736 LMDLRKILG----IIPQS------PVLFSGTVRFNL-DPFSEHSDADLW--------EAL 776
+LRKI G +I Q PV+ T+ + + H E L
Sbjct: 79 EKELRKIRGKEIAMIFQDPMTSLNPVM---TIGDQIAEVLRLHGKGLSKKEAKERAIELL 135
Query: 777 ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 836
E + D RR L + E S G RQ + ++ AL K+L+ DE T A+DV
Sbjct: 136 ELVGIPDPERR----LKSYPHE----LSGGMRQRVMIAMALALNPKLLIADEPTTALDVT 187
Query: 837 TDALIQ---KTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890
A I K ++ E +++I H L + + DR+ ++ +GR++E EE+ N
Sbjct: 188 VQAQILDLLKELQREKG-TALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKN 244
|
Length = 316 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 98.4 bits (246), Expect = 8e-23
Identities = 67/229 (29%), Positives = 110/229 (48%), Gaps = 17/229 (7%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 740
V++ +S + + VG++G GAGK++ + +V + G+IL+D DI K M R
Sbjct: 18 KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLP-MHKR 76
Query: 741 KILGI--IPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVS 797
LGI +PQ +F TV N+ E + DL +A + L + +
Sbjct: 77 ARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALL--EEFHITHLRD 134
Query: 798 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTM--L 855
+ S G+R+ + ++RAL K ++LDE A VD IQ+ I+ K + L
Sbjct: 135 SKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIK-HLKDRGIGVL 193
Query: 856 IIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE-------GSSFS 896
I H + +D CDR ++ G+VL +PEE+++NE G +F
Sbjct: 194 ITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNEDVRRVYLGENFK 242
|
Length = 243 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 1e-22
Identities = 65/247 (26%), Positives = 116/247 (46%), Gaps = 38/247 (15%)
Query: 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 724
I+ +++ Y P L ++ I + V I+G +GAGKS++L +L +V+ G I
Sbjct: 3 MIEVKNLSKTY-PGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61
Query: 725 LIDGFDIAKFGLMDLRKIL---GIIPQSP-----------VLFS-----GTVR--FNLDP 763
L +G I K +LRK+ G+I Q VL T R F L
Sbjct: 62 LFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGL-- 119
Query: 764 FSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 823
FS+ A +ALER +G+ + + S GQ+Q ++++RAL+++ KI
Sbjct: 120 FSKEDKAQALDALER-----------VGILDKAYQRASTLSGGQQQRVAIARALVQQPKI 168
Query: 824 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIA--HRLNTIID-CDRILLLDSGRVLE 880
++ DE A++D + + +++ + + +I H+++ DRI+ L +GR++
Sbjct: 169 ILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVF 228
Query: 881 YDTPEEL 887
EL
Sbjct: 229 DGPASEL 235
|
Length = 258 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-22
Identities = 84/274 (30%), Positives = 129/274 (47%), Gaps = 32/274 (11%)
Query: 14 SLKRMEEFLL-------AEEKILLPNPPLTSGLP-AISIRNGYFSWDSKAERPTLLNINL 65
+L ME+ + P PL A++ N F++D RP L I+
Sbjct: 229 ALTDMEKMFDLLDVEAEVSDAPDAP--PLWPVRLGAVAFINVSFAYD--PRRPILNGISF 284
Query: 66 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------------RGTVAYVP 112
IP+G VAIVG +G GK S I +L V+ S I R + VP
Sbjct: 285 TIPLGKTVAIVGESGAGK-STILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVP 343
Query: 113 QVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDL---LPGGDVTEIGERGVNIS 169
Q + +FN T+ NI +G A E+ D LP G T +GERG+ +S
Sbjct: 344 QDTVLFNDTIAYNIKYGR--PDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLS 401
Query: 170 GGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHF 229
GG+KQRV++AR + N + I D+ SALD H + + +R +G+T +++ ++L
Sbjct: 402 GGEKQRVAIARTILKNPPILILDEATSALDTHTEQAI-QAALREVSAGRTTLVIAHRLST 460
Query: 230 LSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 263
+ D II++ G + E GT E+L G L+ ++
Sbjct: 461 IIDADEIIVLDNGRIVERGTHEELLAAGGLYAEM 494
|
Length = 497 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 96.4 bits (241), Expect = 2e-22
Identities = 60/210 (28%), Positives = 99/210 (47%), Gaps = 41/210 (19%)
Query: 58 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP------VSDAS----AVIRGT 107
L +++L + G +A++G +G GKT+L+ + G P + R
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRN 73
Query: 108 VAYVPQVSWIF-NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVT 159
+ V Q +F + TV +NI FG A AR + +++ L+ L+ P
Sbjct: 74 IGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHE--- 130
Query: 160 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS--- 216
+SGGQ+QRV++ARA+ + + D+PLSALDA + + +R EL
Sbjct: 131 --------LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREE-----LREELKELQ 177
Query: 217 ---GKTRVLVT-NQLHFLSQVDRIILVHEG 242
G T + VT +Q L+ DRI +++EG
Sbjct: 178 RELGITTIYVTHDQEEALALADRIAVMNEG 207
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.1 bits (242), Expect = 2e-22
Identities = 56/246 (22%), Positives = 111/246 (45%), Gaps = 21/246 (8%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
++ D+ Y + +SF + G++G GAGK+++L + ++ + G++
Sbjct: 2 LEVTDLTKSYGS-KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVT 60
Query: 726 IDGFDIAKFGLMDLRKILGIIP-QSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDA 784
IDG D + +R+ +G++ + + T R NL F+ + L R +K
Sbjct: 61 IDGVDTVRDP-SFVRRKIGVLFGERGLYARLTARENLKYFARLNG------LSRKEIKAR 113
Query: 785 IRR--NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 842
I L L + FS G +Q ++++RAL+ ILVLDE T+ +D+RT +
Sbjct: 114 IAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRT----R 169
Query: 843 KTIREEFKSC-----TMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 896
+ + K ++ +H + + CDR+++L G V+ + E L +
Sbjct: 170 RKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTVLRNL 229
Query: 897 KMVQST 902
+ + +
Sbjct: 230 EEIFAF 235
|
Length = 245 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 96.0 bits (240), Expect = 3e-22
Identities = 63/225 (28%), Positives = 102/225 (45%), Gaps = 49/225 (21%)
Query: 42 ISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP---- 96
+ +RN ++ T L +I+L + G VA+VG +G GK++L+ + G P
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 97 VSDASAVIRGT---VAYVPQVS----WIFNATVRDNILFGSAFEP-------ARYEKAID 142
V + G YV Q W TV DN+ G + R E+ ++
Sbjct: 61 VLVDGEPVTGPGPDRGYVFQQDALLPW---LTVLDNVALGLELQGVPKAEARERAEELLE 117
Query: 143 VTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHV 202
+ L + P +SGG +QRV++ARA+ + DV + D+P SALDA
Sbjct: 118 LVGLSGFENAYPH-----------QLSGGMRQRVALARALAVDPDVLLLDEPFSALDALT 166
Query: 203 GRQVFDRCIRGEL------SGKTRVLVTNQLH---FLSQVDRIIL 238
Q ++ EL +GKT +LVT+ + FL+ DR+++
Sbjct: 167 REQ-----LQEELLDIWRETGKTVLLVTHDIDEAVFLA--DRVVV 204
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 4e-22
Identities = 71/240 (29%), Positives = 116/240 (48%), Gaps = 24/240 (10%)
Query: 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-- 98
A+ + FS+D+ R + +++ + G VAIVG TG GK++LI+ + P S
Sbjct: 334 AVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGR 391
Query: 99 ------DASAV----IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 148
D V +R +A V Q + +FN ++ DNI G A E+
Sbjct: 392 ILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR--PDATDEEMRAAAERAQ 449
Query: 149 DLDLL---PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 205
D + P G T +GERG +SGG++QR+++ARA+ + + I D+ SALD +
Sbjct: 450 AHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAK 509
Query: 206 VFD--RCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 263
V + G+T ++ ++L + DRI++ G V E G+F++L G F L
Sbjct: 510 VKAALDELM---KGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAAL 566
|
Length = 588 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 95.3 bits (238), Expect = 4e-22
Identities = 54/225 (24%), Positives = 111/225 (49%), Gaps = 20/225 (8%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
++ + + Y L LS T+ P + + ++G +G GK+++L + + + G IL
Sbjct: 1 LELKGLSKTYGSV--RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL 58
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFS-----GTVRFNLDPFSEHSDADLWEALERAH 780
IDG D+ G+ R+ +G++ Q LF + F L + +A RA
Sbjct: 59 IDGRDVT--GVPPERRNIGMVFQDYALFPHLTVAENIAFGLK------LRGVPKAEIRAR 110
Query: 781 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 840
+++ + +GL+ ++ S GQ+Q ++L+RAL R +L+LDE +A+D +
Sbjct: 111 VRELLEL--VGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREE 168
Query: 841 IQKTIREEFKS--CTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 882
+++ ++E + T + + H + DRI +++ GR+++
Sbjct: 169 LREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 5e-22
Identities = 81/276 (29%), Positives = 139/276 (50%), Gaps = 33/276 (11%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
I+FE+V RY + ++ TI + + ++G +G+GK++ L + R++E G IL
Sbjct: 2 IEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEIL 59
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFN------LDPFSEHSDADLWEALER 778
IDG DI+ ++LR+ +G + Q LF TV N L + + A E
Sbjct: 60 IDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKK--RADEL 117
Query: 779 AHLKDAIRRNSLGLDAQVSEAGENF----SVGQRQLLSLSRALLRRSKILVLDEATAAVD 834
L +GLD SE + + S GQ+Q + ++RAL IL++DE A+D
Sbjct: 118 LDL--------VGLDP--SEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALD 167
Query: 835 VRTDALIQ---KTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890
T +Q K +++E T++ + H ++ + DRI ++D+G +++YDTP+E+L+N
Sbjct: 168 PITRKQLQEEIKELQKELGK-TIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226
Query: 891 EGSSFSKMVQSTGAANAQYLRSLVLGGEAENKLREE 926
+ F V+ + + LR L L A+ R E
Sbjct: 227 PANDF---VEDFFGESERGLRLLSLVSVADAVRRGE 259
|
Length = 309 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 6e-22
Identities = 83/301 (27%), Positives = 138/301 (45%), Gaps = 65/301 (21%)
Query: 664 GSIKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 721
G I+ DV RY RP +P + L+F+ IVG TG+GKS++++ L R +L+
Sbjct: 1164 GKIEIMDVNFRYISRPNVP-IYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKN 1222
Query: 722 GRILI--------------------------------------DGFDIAKF--------- 734
++ G D F
Sbjct: 1223 DHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLD 1282
Query: 735 -------GLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSD-ADLWEALERAHLKDAIR 786
L DLR + I+ Q P+LF+ ++ N+ E + D+ A + A + + I
Sbjct: 1283 GVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIE 1342
Query: 787 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR 846
D V G++ S GQ+Q ++++RALLR KIL+LDEAT+++D ++ LI+KTI
Sbjct: 1343 SLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIV 1402
Query: 847 E--EFKSCTMLIIAHRLNTIIDCDRILLLDS-----GRVLEYDTPEELLSNEGSSFSKMV 899
+ + T++ IAHR+ +I D+I++ ++ V + T EELLS + + K V
Sbjct: 1403 DIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYV 1462
Query: 900 Q 900
+
Sbjct: 1463 K 1463
|
Length = 1466 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 7e-22
Identities = 77/257 (29%), Positives = 120/257 (46%), Gaps = 38/257 (14%)
Query: 31 PNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM 90
+P SG AI + F + L +++L I G VAIVG +G GK++L+ +
Sbjct: 443 TDPGKLSG--AIEVDRVTFRYRPDG-PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLL 499
Query: 91 LGELPPVS-------------DASAVIR--GTVAYVPQVSWIFNATVRDNILFGSAFEPA 135
LG P S D AV R G V Q + + ++ +NI G+
Sbjct: 500 LGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVL---QNGRLMSGSIFENIAGGAPLTLD 556
Query: 136 RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL 195
+A + L D+ +P G T I E G +SGGQ+QR+ +ARA+ + +FD+
Sbjct: 557 EAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEAT 616
Query: 196 SALD----AHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEEG 248
SALD A V + +R L TR+++ H LS + DRI ++ G V ++G
Sbjct: 617 SALDNRTQAIVS-ESLER-----LKV-TRIVIA---HRLSTIRNADRIYVLDAGRVVQQG 666
Query: 249 TFEDLSNNGELFQKLME 265
T+++L LF +L
Sbjct: 667 TYDELMAREGLFAQLAR 683
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 7e-22
Identities = 70/247 (28%), Positives = 115/247 (46%), Gaps = 50/247 (20%)
Query: 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP---- 96
+ ++N S+ S L ++NLDI G V ++G +G GK++L+ + G P
Sbjct: 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGE 59
Query: 97 -------VSDASAVIRGTVAYVPQVSWIF-NATVRDNILFG--SAFEP-----ARYEKAI 141
V+D RG +A V Q ++ + TV +NI FG P R ++
Sbjct: 60 ILIDGRDVTDLPPEKRG-IAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVA 118
Query: 142 DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 201
+ L+H L+ P +SGGQ+QRV++ARA+ VF+ D+PLS LDA
Sbjct: 119 KLLGLEHLLNRKPLQ-----------LSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK 167
Query: 202 VGRQVFDRCIRGELS------GKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSN 255
+ R + +R E+ G T + VT H QV+ + L +V +G + +
Sbjct: 168 L-RVL----MRSEIKKLHERLGTTTIYVT---H--DQVEAMTLADRIVVMNDGRIQQVGT 217
Query: 256 NGELFQK 262
EL+++
Sbjct: 218 PLELYER 224
|
Length = 338 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 7e-22
Identities = 67/245 (27%), Positives = 119/245 (48%), Gaps = 29/245 (11%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
I+FE+V RY ++ L+ I + + ++G +G+GK++ + + R++E G I
Sbjct: 1 IEFENVTKRY-GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF 59
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFN--LDPFSEHSDADLWEALERAHLK 782
IDG DI + ++LR+ +G + Q LF TV N L P W K
Sbjct: 60 IDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLK-----WP-------K 107
Query: 783 DAIRRNSLGLDAQVSEAGENF--------SVGQRQLLSLSRALLRRSKILVLDEATAAVD 834
+ IR + L A V F S GQ+Q + ++RAL +L++DE A+D
Sbjct: 108 EKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALD 167
Query: 835 VRTDALIQ---KTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890
T +Q K +++E T++ + H ++ DRI ++ +G +++ TP+E+L +
Sbjct: 168 PITRDQLQEEFKRLQQELGK-TIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226
Query: 891 EGSSF 895
+ F
Sbjct: 227 PANDF 231
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 1e-21
Identities = 74/246 (30%), Positives = 123/246 (50%), Gaps = 45/246 (18%)
Query: 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 99
P I +R S+ +R L ++LD+P G ++AI+GG+G GK++L+ +LG L P D
Sbjct: 7 PLIEVRGVTKSF---GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP--D 61
Query: 100 ASAV-----------------IRGTVAYVPQVSWIFNA-TVRDNILFGSAFEPARYEKAI 141
+ IR + + Q +F++ TV +N+ F P R +
Sbjct: 62 KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAF-----PLREHTKL 116
Query: 142 DVTSLQHDLDLLPGGDVTEIGERGVN-------ISGGQKQRVSMARAVYSNSDVFIFDDP 194
SL +L L+ + +G RG +SGG ++RV++ARA+ + ++ D+P
Sbjct: 117 P-ESLIRELVLM---KLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEP 172
Query: 195 LSALDAHVGRQVFDRCIRGELS---GKTRVLVTNQLH-FLSQVDRIILVHEGMVKEEGTF 250
S LD + V D IR EL+ G T ++VT+ L L+ DR+ ++ +G V EGT
Sbjct: 173 TSGLDP-ISAGVIDELIR-ELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTP 230
Query: 251 EDLSNN 256
E+L +
Sbjct: 231 EELLAS 236
|
Length = 263 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 95.1 bits (237), Expect = 1e-21
Identities = 67/234 (28%), Positives = 114/234 (48%), Gaps = 41/234 (17%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKF 734
L ++ IP + ++G +G GKS++L +L R+ +L G++L DG DI K
Sbjct: 16 ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKI 75
Query: 735 GLMDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALE 777
+++LR+ +G++ Q P F ++ N LD E S A LW+ +
Sbjct: 76 DVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEV- 134
Query: 778 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 837
KD + ++LGL S GQ+Q L ++RAL ++L+LDE T+A+D
Sbjct: 135 ----KDRLHDSALGL-----------SGGQQQRLCIARALAVEPEVLLLDEPTSALDPIA 179
Query: 838 DALIQKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 890
I++ I+E K T++I+ H + DR G ++EY E++ +N
Sbjct: 180 TGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTN 233
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 1e-21
Identities = 64/219 (29%), Positives = 104/219 (47%), Gaps = 43/219 (19%)
Query: 56 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-VAYVP-- 112
L ++NLDI G V ++G +G GKT+ + M+ L + I G V +P
Sbjct: 12 NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLR-MIAGLEEPTSGRIYIGGRDVTDLPPK 70
Query: 113 --QVSWIF-------NATVRDNILFG--SAFEP-----ARYEKAIDVTSLQHDLDLLPGG 156
++ +F + TV DNI FG P R + ++ ++H LD P
Sbjct: 71 DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPK- 129
Query: 157 DVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS 216
+SGGQ+QRV++ RA+ VF+ D+PLS LDA + Q +R EL
Sbjct: 130 ----------QLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQ-----MRAELK 174
Query: 217 ------GKTRVLVT-NQLHFLSQVDRIILVHEGMVKEEG 248
G T + VT +Q+ ++ DRI ++++G +++ G
Sbjct: 175 RLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 92.4 bits (230), Expect = 2e-21
Identities = 51/218 (23%), Positives = 100/218 (45%), Gaps = 51/218 (23%)
Query: 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----- 96
+SI N FS+ + E+ L N++L++ G +A++G +G GK++L+ + G+L P
Sbjct: 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 97 ------VSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDL 150
VSD + ++ + Q ++F+ T+R+N+
Sbjct: 60 TLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNL------------------------ 95
Query: 151 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 210
G SGG++QR+++AR + ++ + + D+P LD RQ+
Sbjct: 96 --------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLL-SL 140
Query: 211 IRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEG 248
I L KT + +T+ L + +D+I+ + G + +G
Sbjct: 141 IFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.5 bits (236), Expect = 2e-21
Identities = 62/233 (26%), Positives = 114/233 (48%), Gaps = 40/233 (17%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDI--AKF 734
L ++ IP + ++G +G GKS++L L R+ +L G +L+DG +I K
Sbjct: 22 ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKV 81
Query: 735 GLMDLRKILGIIPQSPVLFSGTVRFN--------------LDPFSEHS--DADLWEALER 778
+++LR+ +G++ Q P F ++ N LD E S A LW+ +
Sbjct: 82 DVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEV-- 139
Query: 779 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 838
KD + +++LGL S GQ+Q L ++RAL + ++L++DE T+A+D +
Sbjct: 140 ---KDRLHKSALGL-----------SGGQQQRLCIARALAVKPEVLLMDEPTSALDPIST 185
Query: 839 ALIQKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 890
I++ I E K T++I+ H + D G ++E+ +++ +N
Sbjct: 186 LKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTN 238
|
Length = 253 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 3e-21
Identities = 60/202 (29%), Positives = 100/202 (49%), Gaps = 27/202 (13%)
Query: 57 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-------DASAVIRGTVA 109
P L +++ ++ G +AIVG G GK++L+ A+LG L P S R +
Sbjct: 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIG 71
Query: 110 YVPQ---VSWIFNATVRDNILFG--SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGER 164
YVPQ + F +VRD +L G R D + L+ + ++E+ +R
Sbjct: 72 YVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERV---GLSELADR 128
Query: 165 GV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL--SGKTRV 221
+ +SGGQ+QRV +ARA+ + D+ + D+P + +D ++ +R EL G T +
Sbjct: 129 QIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPK-TQEDIYELLR-ELRREGMTIL 186
Query: 222 LVTNQLHFLSQV----DRIILV 239
+VT H L V DR++L+
Sbjct: 187 VVT---HDLGLVLEYFDRVLLL 205
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.3 bits (233), Expect = 3e-21
Identities = 68/241 (28%), Positives = 124/241 (51%), Gaps = 27/241 (11%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
I+ +++ + + VL G+S ++ + V I+G +G+GKS++L L + E + G I
Sbjct: 3 IEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT 60
Query: 726 IDGFDI-AKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLW-------EAL 776
+DG D+ K ++ LR+ +G++ Q LF TV N+ + A + EA
Sbjct: 61 VDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENV------TLAPVKVKKLSKAEAR 114
Query: 777 ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD-- 834
E+A + + + +GL + S GQ+Q ++++RAL K+++ DE T+A+D
Sbjct: 115 EKA--LELLEK--VGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPE 170
Query: 835 -VRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSNEG 892
V + K + EE TM+I+ H + + DR++ +D G+++E PEE N
Sbjct: 171 LVGEVLDVMKDLAEE--GMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPK 228
Query: 893 S 893
S
Sbjct: 229 S 229
|
Length = 240 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.3 bits (232), Expect = 4e-21
Identities = 65/240 (27%), Positives = 120/240 (50%), Gaps = 20/240 (8%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
I+F++V Y +L +S IVG +GAGKS+++ + R+++ G IL
Sbjct: 4 IEFKEV--SYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSIL 61
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLD---PFSEHSDADLWEALERAHLK 782
IDG DI ++DLR+ +G++ Q P LF GTV+ N++ + D+ L
Sbjct: 62 IDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLS----- 116
Query: 783 DAIRRNSLGLDAQVSEAG-ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 841
+GL+ + + +N S G+ Q +S++R L ++L+LDE T+A+D + +I
Sbjct: 117 ------IVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEII 170
Query: 842 QKTIRE--EFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSNEGSSFSKM 898
++ I + + T++ I H + D L+ G ++EY + +N + +K+
Sbjct: 171 EELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKL 230
|
Length = 241 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 7e-21
Identities = 70/235 (29%), Positives = 122/235 (51%), Gaps = 22/235 (9%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSS---MLNTLFRIVELERG 722
I+ E + RY L +SF++ + V IVG G+GKS+ +LN L E G
Sbjct: 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL---PEAG 62
Query: 723 RILIDGFDIAKFGLMDLRKILGIIPQSP-VLFSGT-----VRFNLDPFSEHSDADLWEAL 776
I + G +++ + D+R+ +G++ Q+P F G V F L E+ E +
Sbjct: 63 TITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGL----ENIGVPREEMV 118
Query: 777 ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 836
ER A+R+ +G++ ++ S GQ+Q ++++ L + I++LDEAT+ +D R
Sbjct: 119 ERVD--QALRQ--VGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPR 174
Query: 837 TDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 889
+ +T+R+ E K T+L I H L+ DR+++++ G +LE TPEE+
Sbjct: 175 GRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229
|
Length = 279 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 1e-20
Identities = 68/218 (31%), Positives = 116/218 (53%), Gaps = 33/218 (15%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--------DASAVI--RGTVA 109
L ++NL++P GSLVA++G +G GK++L+ + G P S DA+ V +
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIG 75
Query: 110 YVPQVSWIF-NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 161
+V Q +F + TVRDNI FG A AR E+ +++ L+ D P
Sbjct: 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPN------ 129
Query: 162 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV--FDRCIRGELSGKT 219
+SGGQ+QRV++ARA+ V + D+P ALDA V +++ + R + E+ T
Sbjct: 130 -----QLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVH-VT 183
Query: 220 RVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 256
V VT +Q + DRI+++ G +++ G+ +++ ++
Sbjct: 184 TVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 2e-20
Identities = 53/206 (25%), Positives = 93/206 (45%), Gaps = 57/206 (27%)
Query: 55 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--------------DA 100
++ L +++L+I G +VA++G +G GK++L+ + G P S D
Sbjct: 11 GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDE 70
Query: 101 SAVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVT 159
+R + V Q +F + TV +NI G
Sbjct: 71 LPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------ 100
Query: 160 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG--ELSG 217
+SGGQ+QRV++ARA+ + DV + D+P SALD + R+ ++ G
Sbjct: 101 --------LSGGQQQRVALARALAMDPDVLLLDEPTSALDP-ITRREVRALLKSLQAQLG 151
Query: 218 KTRVLVTNQLHFLSQV-DRIILVHEG 242
T VLVT+ L +++ DR++++ +G
Sbjct: 152 ITVVLVTHDLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 2e-20
Identities = 74/242 (30%), Positives = 111/242 (45%), Gaps = 34/242 (14%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR-IVELER--- 721
++ E++ RY V++G+S ++ + VG++G GAGK+ T F IV L +
Sbjct: 1 LRAENLSKRYGKR--KVVNGVSLSVKQGEIVGLLGPNGAGKT----TTFYMIVGLVKPDS 54
Query: 722 GRILIDGFDIAKFGLMDLRKILGII--PQSPVLFSG-TVRFNLDPFSEHSDADLWEALER 778
G+IL+DG DI K M R LGI PQ +F TV N+ LE
Sbjct: 55 GKILLDGQDITKLP-MHKRARLGIGYLPQEASIFRKLTVEENILA-----------VLEI 102
Query: 779 AHLKDAIRRNSL-------GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 831
L R L + + S G+R+ + ++RAL K L+LDE A
Sbjct: 103 RGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFA 162
Query: 832 AVDVRTDALIQKTIRE-EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889
VD IQK I+ + + +LI H + + DR ++ G+VL TPEE+ +
Sbjct: 163 GVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222
Query: 890 NE 891
NE
Sbjct: 223 NE 224
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 3e-20
Identities = 52/201 (25%), Positives = 86/201 (42%), Gaps = 46/201 (22%)
Query: 43 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA 102
I N F + R L N++L + G +VA+VG G GK++L+ A+ G L P S
Sbjct: 1 EIENLSFRYG---GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSG-EI 56
Query: 103 VIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 162
+I G ++ + +R I + V L
Sbjct: 57 LIDGK-----DIAKLPLEELRRRIGY--------------VPQL---------------- 81
Query: 163 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVL 222
SGGQ+QRV++ARA+ N D+ + D+P S LD ++ + G+T ++
Sbjct: 82 ------SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVII 135
Query: 223 VTNQLHFLSQV-DRIILVHEG 242
VT+ DR+I++ +G
Sbjct: 136 VTHDPELAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 4e-20
Identities = 58/217 (26%), Positives = 103/217 (47%), Gaps = 22/217 (10%)
Query: 669 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 728
E++ Y+ + +L LS + + + + G+ GAGK+++ L +++ G IL++G
Sbjct: 3 ENISFSYK-KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG 61
Query: 729 FDIAKFGLMDLRKILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWEA---LERAHLKD 783
I + RK +G + Q LF+ +VR L + DA +A L+ L
Sbjct: 62 KPIKA---KERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYA 118
Query: 784 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 843
R+ L L S GQ+Q L+++ ALL +L+ DE T+ +D + + +
Sbjct: 119 LKERHPLSL-----------SGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGE 167
Query: 844 TIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRV 878
IRE +++I H + CDR+LLL +G +
Sbjct: 168 LIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 5e-20
Identities = 61/235 (25%), Positives = 109/235 (46%), Gaps = 27/235 (11%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
I+FE+V Y P L +SF IP + V + G +GAGKS++L ++ RG+IL
Sbjct: 2 IRFENVSKAY-PGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKIL 60
Query: 726 IDGFDIAKFGLMD---LRKILGIIPQSPVLFSG-----TVRFNLDPFSEHSDA---DLWE 774
++G D+++ + LR+ +G++ Q L V L + + E
Sbjct: 61 VNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSE 120
Query: 775 ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 834
L+ LK R L +Q+S G++Q ++++RA++ + +L+ DE T +D
Sbjct: 121 VLDLVGLKHKARA----LPSQLSG-------GEQQRVAIARAIVNQPAVLLADEPTGNLD 169
Query: 835 VRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCD-RILLLDSGRVLEYDTPEE 886
I + EE T+L+ H L + R+L L+ GR++ ++
Sbjct: 170 PDLSWEIMRLF-EEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESRGV 223
|
Length = 223 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 87.8 bits (219), Expect = 6e-20
Identities = 53/218 (24%), Positives = 94/218 (43%), Gaps = 60/218 (27%)
Query: 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----- 96
I +RN + K L +I+L + G + ++G G GKT+LI +LG L P
Sbjct: 1 IEVRNLSKRYGKK---TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57
Query: 97 ------VSDASAVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHD 149
+ ++ + Y+P+ ++ N TVR+N+
Sbjct: 58 KVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKL--------------------- 96
Query: 150 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 209
SGG KQR+++A+A+ + ++ I D+P S LD R+ F
Sbjct: 97 -------------------SGGMKQRLALAQALLHDPELLILDEPTSGLDP-ESRREFWE 136
Query: 210 CIRGELS--GKTRVLVTNQLHFLSQV-DRIILVHEGMV 244
+R EL GKT +L ++ L ++ DR+ +++ G +
Sbjct: 137 LLR-ELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 95.9 bits (238), Expect = 7e-20
Identities = 118/563 (20%), Positives = 230/563 (40%), Gaps = 85/563 (15%)
Query: 386 IYSLLSFG--QVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINR 443
I+SL+ G Q +++ +S+ + + + K L L S+ F NP ++ +
Sbjct: 100 IFSLVLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSD 159
Query: 444 FAKDLGDIDRNVAV-FVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQ 502
L ++ + F+ +F S L ++ + I + L Y +
Sbjct: 160 LDFYLEQVNAGIGTKFITIFT-YASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVICN 218
Query: 503 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMG 562
+ K+ + + + EAL G+ T+ +Y + S +Y L
Sbjct: 219 KKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYIL---K 275
Query: 563 ANRWLAIRLEIVGGLMI-------WLTATFAV--VQNGSAENQEAFASTMGLLLSYALNI 613
AN ++ + ++ G ++ W + + N N S + +LL +
Sbjct: 276 ANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGV---L 332
Query: 614 TSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVL 673
S+ + L ++ E + ++E + E+ + PLV E+N I+F++V
Sbjct: 333 ISMFMLTIILPNITE-YMKSLEATNSLYEIINRKPLV-ENNDDGKKLKDIKKIQFKNVRF 390
Query: 674 RY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI-DGFD 730
Y R ++ + L+FT+ VG +G GKS++L + R+ + G I+I D +
Sbjct: 391 HYDTRKDVE-IYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHN 449
Query: 731 IAKFGLMDLRKILGIIPQSPVLFSGTVRFN----------LDPFSEHSDADLWEALERAH 780
+ L R +G++ Q P+LFS +++ N L+ S + + D ++ E +
Sbjct: 450 LKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKN 509
Query: 781 LKDAIRRNSLG------------------------------------------------L 792
+++ R G
Sbjct: 510 KRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKY 569
Query: 793 DAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR--EEFK 850
+ V S GQ+Q +S++RA++R KIL+LDEAT+++D +++ L+QKTI + +
Sbjct: 570 ETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNE 629
Query: 851 SCTMLIIAHRLNTIIDCDRILLL 873
+ +IIAHRL+TI + I +L
Sbjct: 630 NRITIIIAHRLSTIRYANTIFVL 652
|
Length = 1466 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.7 bits (225), Expect = 7e-20
Identities = 70/243 (28%), Positives = 118/243 (48%), Gaps = 32/243 (13%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
+K E++ Y + L G++ I + I+G GAGKS++ L I++ GRIL
Sbjct: 6 LKVEELNYNY-SDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRIL 64
Query: 726 IDG--FDIAKFGLMDLRKILGIIPQSP--VLFSGTVR-------FNLDPFSEHSDADLWE 774
DG D ++ GLM LR+ +G++ Q P LFS +V NL + +
Sbjct: 65 FDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDN 124
Query: 775 ALER---AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 831
AL+R HLKD + S GQ++ ++++ L+ K+LVLDE TA
Sbjct: 125 ALKRTGIEHLKD--------------KPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTA 170
Query: 832 AVDVRTDALIQKTIREEFKS--CTMLIIAHRLNTI-IDCDRILLLDSGRVLEYDTPEELL 888
+D + I K + E K T++I H ++ + + CD + ++ GRV+ P+E+
Sbjct: 171 GLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230
Query: 889 SNE 891
+ +
Sbjct: 231 AEK 233
|
Length = 283 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 8e-20
Identities = 76/241 (31%), Positives = 119/241 (49%), Gaps = 47/241 (19%)
Query: 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELP--- 95
PA+ IRN S+ + +I+LDI G V ++G +G GKT+L+ + G E P
Sbjct: 4 PALEIRNVSKSFGDF---TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60
Query: 96 -------PVSDASAVIRGTVAYVPQVSWIF-NATVRDNILFG--------SAFEPARYEK 139
++D R + V Q +F + TV +N+ FG A AR E+
Sbjct: 61 EILLDGEDITDVPPEKRP-IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEE 119
Query: 140 AIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 199
A+++ L+ D P +SGGQ+QRV++ARA+ V + D+PLSALD
Sbjct: 120 ALELVGLEGFADRKPH-----------QLSGGQQQRVALARALVPEPKVLLLDEPLSALD 168
Query: 200 AHVGRQVFDRCIRGEL------SGKTRVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFED 252
A + Q+ R EL G T V VT +Q L+ DRI ++++G +++ GT E+
Sbjct: 169 AKLREQM-----RKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEE 223
Query: 253 L 253
+
Sbjct: 224 I 224
|
Length = 352 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 91.8 bits (229), Expect = 9e-20
Identities = 78/250 (31%), Positives = 123/250 (49%), Gaps = 45/250 (18%)
Query: 666 IKFEDVVLRYRPELPPV--LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LER- 721
I+ +++ + + L+ +S IP + G++G +GAGKS TL R + LER
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKS----TLIRCINLLERP 57
Query: 722 --GRILIDGFDIAKFGLMDL----RKILGIIPQSPVLFSGTVRFNLDPFSEHSDAD---L 772
GR+L+DG D+ +L R+I G+I Q FNL S + D L
Sbjct: 58 TSGRVLVDGQDLTALSEKELRKARRQI-GMIFQ---------HFNL--LSSRTVFDNVAL 105
Query: 773 WEALERAHL-KDAIRR--NSL----GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 825
LE A K I+ L GL + S GQ+Q ++++RAL K+L+
Sbjct: 106 --PLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLL 163
Query: 826 LDEATAAVDVRTDALIQ---KTIREEFKSCTMLIIAHRLNTI--IDCDRILLLDSGRVLE 880
DEAT+A+D T I K I E T+++I H ++ + I CDR+ ++D+GR++E
Sbjct: 164 CDEATSALDPATTRSILELLKDINRELG-LTIVLITHEMDVVKRI-CDRVAVIDAGRLVE 221
Query: 881 YDTPEELLSN 890
T E+ S+
Sbjct: 222 QGTVSEVFSH 231
|
Length = 343 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 1e-19
Identities = 66/235 (28%), Positives = 113/235 (48%), Gaps = 46/235 (19%)
Query: 52 DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELPPVSDASAVIRGT--- 107
D+ + L +++L +P G + I+G +G GK++LI + G E P + S ++ GT
Sbjct: 13 DTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP--TSGSVLVDGTDLT 70
Query: 108 -------------VAYVPQVSWIFNA-TVRDNILFGSAFEPARYEKA---------IDVT 144
+ + Q + ++ TV +N+ E A KA +++
Sbjct: 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVAL--PLEIAGVPKAEIEERVLELLELV 128
Query: 145 SLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR 204
L+ D P +SGGQKQRV +ARA+ +N V + D+ SALD +
Sbjct: 129 GLEDKADAYPA-----------QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQ 177
Query: 205 QVFD--RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 256
+ R I EL G T VL+T+++ + ++ DR+ ++ +G V EEGT E++ N
Sbjct: 178 SILALLRDINREL-GLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFAN 231
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.7 bits (221), Expect = 1e-19
Identities = 57/230 (24%), Positives = 107/230 (46%), Gaps = 30/230 (13%)
Query: 56 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-------------DASA 102
+ L ++L++ G +VA++G G GKT+L+ ++G + P S
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHE 74
Query: 103 VIRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 161
R +AYVP+ IF TV +N+L G+ + + D+ + +L P +
Sbjct: 75 RARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEV---YELFP-----RL 126
Query: 162 GER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGEL 215
ER +SGG++Q +++ARA+ S + + D+P L + ++F+ + +R E
Sbjct: 127 KERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE- 185
Query: 216 SGKTRVLVTNQLHF-LSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 264
G T +LV F L DR ++ G + GT +L + ++ + +
Sbjct: 186 GGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPDVREAYL 235
|
Length = 237 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.7 bits (234), Expect = 1e-19
Identities = 67/218 (30%), Positives = 109/218 (50%), Gaps = 17/218 (7%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-L 739
L G+S T+ P + ++G GAGKS+++ L + + G ILIDG +A D L
Sbjct: 22 KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDAL 81
Query: 740 RKILGIIPQSPVLFSG-TVRFNL----DPFSEHSDADLWEALERAHLKDAIRRNSLGLDA 794
+ + Q L +V N+ +P D +A+ R ++ + R LGLD
Sbjct: 82 AAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLID-RKAMRRR-ARELLAR--LGLDI 137
Query: 795 QVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR-TDALIQKTIREEFKS-- 851
+ S+ QRQ++ ++RAL +++L+LDE TAA+ V+ T+ L IR K+
Sbjct: 138 DPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLF-DLIR-RLKAQG 195
Query: 852 CTMLIIAHRLNTIID-CDRILLLDSGR-VLEYDTPEEL 887
++ I+HRL+ + + DRI +L GR V T E
Sbjct: 196 VAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAET 233
|
Length = 500 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 1e-19
Identities = 62/236 (26%), Positives = 98/236 (41%), Gaps = 56/236 (23%)
Query: 661 PSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE 720
P + V + G+SF+I + +G+VG +G GKS++ + + E
Sbjct: 15 PVGKGFGKKRYV--------KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT 66
Query: 721 RGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAH 780
G IL +G DI K E + E LE+
Sbjct: 67 SGEILFEGKDITKLS-----------------------------KEERRERVLELLEKVG 97
Query: 781 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA- 839
L + L E S GQRQ + ++RAL K++V DE +A+DV A
Sbjct: 98 LPEEF------LYRYPHE----LSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQ 147
Query: 840 ---LIQKTIREEFKSCTMLIIAHRLNTI--IDCDRILLLDSGRVLEYDTPEELLSN 890
L++ ++EE T L I+H L+ + I DRI ++ G+++E EE+ SN
Sbjct: 148 ILNLLKD-LQEEL-GLTYLFISHDLSVVRYI-SDRIAVMYLGKIVEIGPTEEVFSN 200
|
Length = 268 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.4 bits (219), Expect = 1e-19
Identities = 48/181 (26%), Positives = 90/181 (49%), Gaps = 11/181 (6%)
Query: 673 LRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA 732
+ Y +L+ +S ++ + + I G +G GKS++L + ++ G +L +G D++
Sbjct: 9 VGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVS 68
Query: 733 KFGLMDLRKILGIIPQSPVLFSGTVRFNLD-PFSEHSDADLWEALERAHLKDAIRRNSLG 791
R+ + Q+P LF TV NL P+ + +RA D + R +L
Sbjct: 69 TLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNR-----RPDRAAALDLLARFALP 123
Query: 792 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV----RTDALIQKTIRE 847
D+ +++ S G++Q ++L R L KIL+LDE T+A+D + +I + +RE
Sbjct: 124 -DSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVRE 182
Query: 848 E 848
+
Sbjct: 183 Q 183
|
Length = 223 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 2e-19
Identities = 57/228 (25%), Positives = 104/228 (45%), Gaps = 29/228 (12%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 741
+L G+S + P + + I+G GAGKS++L L + + G + ++G + + +L +
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 742 ILGIIPQSPVL-FSGT----VRFNLDPFSEHSDAD-----LWEALERAHLKDAIRRNSLG 791
++PQ+ L F T V+ P + + +AL L R+
Sbjct: 76 HRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRT 135
Query: 792 LDAQVSEAGENFSVGQRQLLSLSRALLRRS------KILVLDEATAAVDVRTDALIQKTI 845
L S G++Q + L+R L + + L LDE T+A+D+ +
Sbjct: 136 L-----------SGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLA 184
Query: 846 REEFKS-CTMLIIAHRLN-TIIDCDRILLLDSGRVLEYDTPEELLSNE 891
R+ + +L + H LN DRI+LL GRV+ +P+++L++E
Sbjct: 185 RQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDE 232
|
Length = 259 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 2e-19
Identities = 54/209 (25%), Positives = 91/209 (43%), Gaps = 44/209 (21%)
Query: 55 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-------DASAVIRGT 107
L +INL + G VAI+G +G GK++L+ + G P S
Sbjct: 14 GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPD 73
Query: 108 VAYVPQ----VSWIFNATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGG 156
+ YV Q + W TV DN+ G A R ++ +++ L D P
Sbjct: 74 IGYVFQEDALLPW---LTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH- 129
Query: 157 DVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA----HVGRQVFDRCIR 212
+SGG +QRV++ARA+ + + + D+P ALDA + ++ +
Sbjct: 130 ----------QLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLR--LW 177
Query: 213 GELSGKTRVLVTNQLH---FLSQVDRIIL 238
E KT +LVT+ + +L+ DR+++
Sbjct: 178 EET-RKTVLLVTHDVDEAVYLA--DRVVV 203
|
Length = 248 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 2e-19
Identities = 69/220 (31%), Positives = 115/220 (52%), Gaps = 29/220 (13%)
Query: 58 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELPP----------VSDASAVIRG 106
L +++LDIP G LVA++G +G GKT+L+ + G E P +D R
Sbjct: 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERN 75
Query: 107 TVAYVPQVSWIF-NATVRDNILFG-----SAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 160
V +V Q +F + TV DN+ FG + P E V L L L+ +
Sbjct: 76 -VGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHEL---LKLV---QLDW 128
Query: 161 IGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV--FDRCIRGELSG 217
+ +R +SGGQ+QRV++ARA+ V + D+P ALDA V +++ + R + EL
Sbjct: 129 LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDEL-H 187
Query: 218 KTRVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 256
T V VT +Q L DR++++++G +++ GT +++ ++
Sbjct: 188 VTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 2e-19
Identities = 57/231 (24%), Positives = 110/231 (47%), Gaps = 36/231 (15%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
I+ +++ + VL G+ T+ + V I+G +G+GKS++L + + E + G I+
Sbjct: 1 IEIKNLHKSFGDF--HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTII 58
Query: 726 IDGFDI--AKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDA------------- 770
IDG + K + +LR+ +G++ Q FNL P H
Sbjct: 59 IDGLKLTDDKKNINELRQKVGMVFQQ---------FNLFP---HLTVLENITLAPIKVKG 106
Query: 771 -DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEA 829
EA ERA + + + +GL + S GQ+Q ++++RAL K+++ DE
Sbjct: 107 MSKAEAEERAL--ELLEK--VGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEP 162
Query: 830 TAAVDVRTDALIQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRV 878
T+A+D + +++ + TM+++ H + + DR++ +D GR+
Sbjct: 163 TSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.3 bits (221), Expect = 2e-19
Identities = 66/229 (28%), Positives = 121/229 (52%), Gaps = 9/229 (3%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
I+ E+V Y P+ P L ++ I + +GI+G+ G+GKS++ L ++ ++G++L
Sbjct: 2 IRLENVSYSY-PDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60
Query: 726 IDGFDIAKFG-LMDLRKILGIIPQSP-VLFSG-TVRFNLDPFSEHSDADLWEALERAHLK 782
+ G D F L +RK++GI+ Q+P F G TV +L E+ E +R
Sbjct: 61 VSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRA 120
Query: 783 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-DALI 841
A +GL+ + + S GQ Q ++L+ L + L+ DE T+ +D + A++
Sbjct: 121 LA----EIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVL 176
Query: 842 QKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 890
++ + K T++ I H L + D DRI+++D G+++ PE +LS+
Sbjct: 177 ERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225
|
Length = 274 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 87.9 bits (219), Expect = 2e-19
Identities = 59/219 (26%), Positives = 108/219 (49%), Gaps = 35/219 (15%)
Query: 54 KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG---------------ELPPVS 98
+ L ++NL+I G VAIVG +G GK++L++ +LG +L +S
Sbjct: 15 GEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLN-LLGGLDKPTSGEVLINGKDLTKLS 73
Query: 99 DA--SAVIRGTVAYVPQ-VSWIFNATVRDNILFGSAF---EPARYEKAIDVTSLQHDL-D 151
+ + + R + +V Q + + + TV +N+ R ++A + L D
Sbjct: 74 EKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLED 133
Query: 152 LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 211
L +E+ SGGQ+QRV++ARA+ +N + + D+P LD+ ++V + +
Sbjct: 134 RLLKKKPSEL-------SGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLE--L 184
Query: 212 RGELS---GKTRVLVTNQLHFLSQVDRIILVHEGMVKEE 247
EL+ GKT ++VT+ DR+I + +G ++EE
Sbjct: 185 LRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEEE 223
|
Length = 226 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 3e-19
Identities = 59/231 (25%), Positives = 101/231 (43%), Gaps = 45/231 (19%)
Query: 42 ISIRNGYFSWDSKAER-PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-- 98
I ++N ++ E+ L ++L I G VAIVG +G GK++L++ + G P S
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 99 -------------DASAVIRG-TVAYVPQVSWIFN----ATVRDNILFGSAFEP------ 134
A R + +V Q FN T +N+
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQS---FNLLPDLTALENVELPLLLAGVPKKER 117
Query: 135 -ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 193
R E+ ++ L L+ P +SGGQ+QRV++ARA+ ++ + + D+
Sbjct: 118 RERAEELLERVGLGDRLNHYPS-----------ELSGGQQQRVAIARALANDPKIILADE 166
Query: 194 PLSALDAHVGRQVFDRCIRG--ELSGKTRVLVTNQLHFLSQVDRIILVHEG 242
P LD+ G++V + +R + +G T V+VT+ DRII + +G
Sbjct: 167 PTGNLDSETGKEVME-LLRELNKEAGTTIVVVTHDPELAEYADRIIELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 3e-19
Identities = 60/209 (28%), Positives = 99/209 (47%), Gaps = 40/209 (19%)
Query: 59 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS---------DASAVIRGTVA 109
L +++LD+ G ++A+ G G GKT+L + G + S + R ++
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIG 74
Query: 110 YVPQVS--WIFNATVRDNILFGSAFEPARYEKAIDVTSL--------QHDLDLLPGGDVT 159
YV Q +F +VR+ +L G A E+A V +H L L
Sbjct: 75 YVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSL------- 127
Query: 160 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS--G 217
SGGQKQR+++A A+ S D+ IFD+P S LD +V + + EL+ G
Sbjct: 128 ---------SGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGE--LIRELAAQG 176
Query: 218 KTRVLVTNQLHFLSQV-DRIILVHEGMVK 245
K +++T+ FL++V DR++L+ G +
Sbjct: 177 KAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 3e-19
Identities = 60/214 (28%), Positives = 104/214 (48%), Gaps = 24/214 (11%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL- 739
L ++ I + V IVG +G+GKS++LN L + + G +LI+G D+ K +L
Sbjct: 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELA 78
Query: 740 ---RKILGIIPQS-PVLFSGTVRFNLD-PF------SEHSDADLWEALERAHLKDAIRRN 788
RK +G + Q+ +L TV N++ P + E LE L+D + +
Sbjct: 79 KLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKK 138
Query: 789 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREE 848
SE S GQ+Q ++++RAL+ KI++ DE T +D +T + + +RE
Sbjct: 139 K------PSEL----SGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLREL 188
Query: 849 FKS--CTMLIIAHRLNTIIDCDRILLLDSGRVLE 880
K T++++ H DR++ L G++ E
Sbjct: 189 NKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222
|
Length = 226 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 4e-19
Identities = 57/205 (27%), Positives = 93/205 (45%), Gaps = 42/205 (20%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL--FRIVELERGRILIDGFDIAKFGLMD 738
+L +S P + I+G +GAGKS++LN L R G +LI+G + K
Sbjct: 23 QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKR---S 79
Query: 739 LRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVS 797
RKI+G +PQ +L TVR L F+ A L+ GL
Sbjct: 80 FRKIIGYVPQDDILHPTLTVRETLM-FA-------------AKLR--------GL----- 112
Query: 798 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS-CTMLI 856
S G+R+ +S++ L+ +L LDE T+ +D + + +R + T++
Sbjct: 113 ------SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIIC 166
Query: 857 IAHRLNTII--DCDRILLLDSGRVL 879
H+ ++ I D++LLL GRV+
Sbjct: 167 SIHQPSSEIFELFDKLLLLSQGRVI 191
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 86.7 bits (216), Expect = 5e-19
Identities = 63/221 (28%), Positives = 103/221 (46%), Gaps = 34/221 (15%)
Query: 58 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-------------DASAVI 104
L ++L +P G +VA++G G GKT+L+ ++G LPP S
Sbjct: 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERA 73
Query: 105 RGTVAYVPQVSWIF-NATVRDNILFG-SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 162
R + YVP+ IF TV +N+L G A A+ + ++ +L P +
Sbjct: 74 RAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLE-----RVYELFP-----RLK 123
Query: 163 ER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELS 216
ER +SGG++Q +++ARA+ S + + D+P L + ++F+ R +R E
Sbjct: 124 ERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDE-- 181
Query: 217 GKTRVLVTNQLHF-LSQVDRIILVHEGMVKEEGTFEDLSNN 256
G T +LV F L DR ++ G V EGT +L +
Sbjct: 182 GVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLAD 222
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 5e-19
Identities = 61/223 (27%), Positives = 99/223 (44%), Gaps = 33/223 (14%)
Query: 674 RYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK 733
+ L +SF I ++VGI+G GAGKS++L + I + G++ + G +A
Sbjct: 34 GRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG-KVA- 91
Query: 734 FGLMDLRKILGIIPQSPVLFSG--TVRFN---LDPFSEHSDADLWEALERAHLKDAIRRN 788
L++L G P+ +G + L + D + E +E A L D I
Sbjct: 92 -PLIELG--AGFDPE----LTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFI--- 141
Query: 789 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR-- 846
D V + +S G L+ S A IL+LDE A D A +K +
Sbjct: 142 ----DQPV----KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDA---AFQEKCLERL 190
Query: 847 EEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 886
E K+ T+++++H L I CDR + L+ G++ +PEE
Sbjct: 191 NELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEE 233
|
Length = 249 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.8 bits (216), Expect = 6e-19
Identities = 66/225 (29%), Positives = 104/225 (46%), Gaps = 44/225 (19%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT------------ 107
L I+L + G +V I+G +G GK++L+ + G L S + G
Sbjct: 18 LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNG-LEEPDSGSITVDGEDVGDKKDILKLR 76
Query: 108 --VAYVPQVSWIFNA----TVRDNILF------GSAFEPARYEKAIDVTS---LQHDLDL 152
V V Q FN TV +N+ + AR EKA+++ L D
Sbjct: 77 RKVGMVFQQ---FNLFPHLTVLENVTLAPVKVKKLSKAEAR-EKALELLEKVGLADKADA 132
Query: 153 LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 212
P +SGGQ+QRV++ARA+ + V +FD+P SALD + +V D
Sbjct: 133 YPA-----------QLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKD 181
Query: 213 GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 256
G T ++VT+++ F +V DR+I + +G + EEG E+ +N
Sbjct: 182 LAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226
|
Length = 240 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 6e-19
Identities = 64/213 (30%), Positives = 103/213 (48%), Gaps = 12/213 (5%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 740
L +SFT+ P V ++G GAGKS++ + L R+ + G+I + G D+ + L
Sbjct: 15 RALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALA 74
Query: 741 KILGIIPQSPVL-FSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNS--LGLDAQVS 797
++ G++ Q P L +VR NL A L L RA + I LGL +
Sbjct: 75 RL-GVVFQQPTLDLDLSVRQNL-----RYHAAL-HGLSRAEARARIAELLARLGLAERAD 127
Query: 798 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKSCTML 855
+ + G R+ + ++RALL R +L+LDE T +D + A I +R + ++L
Sbjct: 128 DKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLSVL 187
Query: 856 IIAHRLNTIIDCDRILLLDSGRVLEYDTPEELL 888
H ++ I DR+++L GRVL EL
Sbjct: 188 WATHLVDEIEADDRLVVLHRGRVLADGAAAELR 220
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 89.5 bits (222), Expect = 6e-19
Identities = 64/221 (28%), Positives = 113/221 (51%), Gaps = 20/221 (9%)
Query: 687 SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL----RKI 742
I + I+G +G+GKS+ + L R++E G+I IDG +I K ++L RK
Sbjct: 13 DLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKK 72
Query: 743 LGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGE 801
+G++ Q LF T+ N E E E+A + ++ +GL+ +
Sbjct: 73 IGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKA--LELLKL--VGLEEYEHRYPD 128
Query: 802 NFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC------TML 855
S G +Q + L+RAL IL++DEA +A+ D LI+ ++++E K T++
Sbjct: 129 ELSGGMQQRVGLARALAAEPDILLMDEAFSAL----DPLIRDSMQDELKKLQATLQKTIV 184
Query: 856 IIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSNEGSSF 895
I H L+ I DRI+++ +G +++ TP+E+L N + +
Sbjct: 185 FITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEY 225
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 8e-19
Identities = 47/129 (36%), Positives = 70/129 (54%), Gaps = 14/129 (10%)
Query: 707 SSMLNTLFRIVELERGRILIDGFDIAKFG-LMDLRKILGIIPQSPVLF-SGTVRFNLDP- 763
S++L + +++ G IL+DG D LRK +G++ Q P LF TVR NL
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 764 -FSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 822
+ +DA EALER L D + R +G S GQ+Q ++++RALL++ K
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREPVG----------TLSGGQKQRVAIARALLKKPK 110
Query: 823 ILVLDEATA 831
+L+LDE TA
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 84.4 bits (210), Expect = 1e-18
Identities = 56/224 (25%), Positives = 91/224 (40%), Gaps = 62/224 (27%)
Query: 43 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA-- 100
+ N + R L +++L I G +V I+G G GK++L+ + G L P S
Sbjct: 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL 57
Query: 101 ----------SAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDL 150
+ +AYVPQ L
Sbjct: 58 LDGKDLASLSPKELARKIAYVPQA-----------------------------------L 82
Query: 151 DLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 209
+LL + + +R N +SGG++QRV +ARA+ + + D+P S LD ++ +
Sbjct: 83 ELL---GLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLEL 139
Query: 210 CIR-GELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEG 248
R GKT V+V LH L+ DR+IL+ +G + +G
Sbjct: 140 LRRLARERGKTVVMV---LHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 1e-18
Identities = 61/218 (27%), Positives = 102/218 (46%), Gaps = 8/218 (3%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 740
+ G++F + + G +G GAGK++ + L ++ G + G+D+ + +R
Sbjct: 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVR 65
Query: 741 KILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEA 799
+ +GI+PQ + T R NL+ EA ERA ++ + LG A
Sbjct: 66 RSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERA--EELLELFELGEAAD--RP 121
Query: 800 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS-CTMLIIA 858
+S G R+ L ++ +L+ + +L LDE T +D RT I IR + T+L+
Sbjct: 122 VGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTT 181
Query: 859 HRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 895
H + CDRI ++D GR++ TPEEL G
Sbjct: 182 HYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDT 219
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 84.8 bits (211), Expect = 2e-18
Identities = 57/237 (24%), Positives = 94/237 (39%), Gaps = 45/237 (18%)
Query: 666 IKFEDVVLRYRPELPP--VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 723
++ +V Y L +S ++ + V +VG +G GKS++L + + G
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 724 ILIDGFDIAKFGLMDLRKILGIIPQSPVLF-----SGTVRFNLDPFSEHSDADLWE---- 774
+L+DG + G + Q L V L+ A+ E
Sbjct: 61 VLVDGEPVT-----GPGPDRGYVFQQDALLPWLTVLDNVALGLE-LQGVPKAEARERAEE 114
Query: 775 ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 834
LE L Q+S G G RQ ++L+RAL +L+LDE +A+D
Sbjct: 115 LLELVGLSGFENA----YPHQLS--G-----GMRQRVALARALAVDPDVLLLDEPFSALD 163
Query: 835 VRTDALIQ----KTIREEFKSCTMLIIAHRLNTIID-----CDRILLLDS--GRVLE 880
T +Q RE K T+L++ H ID DR+++L + GR++
Sbjct: 164 ALTREQLQEELLDIWRETGK--TVLLVTHD----IDEAVFLADRVVVLSARPGRIVA 214
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 2e-18
Identities = 65/219 (29%), Positives = 114/219 (52%), Gaps = 12/219 (5%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 741
L +S + D I+G TG+GKS +L T+ ++ + G+IL++G DI L ++
Sbjct: 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT--NLPPEKR 71
Query: 742 ILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 800
+ +PQ+ LF TV N+ + D E + I LG+D ++
Sbjct: 72 DISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVL---EIAE-MLGIDHLLNRKP 127
Query: 801 ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-DALIQ--KTIREEFKSCTMLII 857
E S G++Q ++++RAL+ KIL+LDE +A+DVRT + L + K IR+EF T+L +
Sbjct: 128 ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGV-TVLHV 186
Query: 858 AHRLNTI-IDCDRILLLDSGRVLEYDTPEELLSNEGSSF 895
H D++ ++ +G++++ PEE+ + F
Sbjct: 187 THDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKPKNEF 225
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 2e-18
Identities = 69/234 (29%), Positives = 114/234 (48%), Gaps = 18/234 (7%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
+ +DV Y LP + T+P + V I+G +GAGKS++LN + G IL
Sbjct: 2 LALDDVRFSYG-HLP--MR-FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEIL 57
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDA 784
I+G D + + ++ Q LF+ TV N+ L A +R ++ A
Sbjct: 58 INGVDHT--ASPPAERPVSMLFQENNLFAHLTVAQNIG-LGLSPGLKL-NAEQREKVEAA 113
Query: 785 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD--VRTD--AL 840
+ +GL + S GQRQ ++L+R L+R IL+LDE +A+D +R + AL
Sbjct: 114 AAQ--VGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLAL 171
Query: 841 IQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 893
+ + E + T+L++ H DR++ LD+GR+ + +ELLS + S
Sbjct: 172 VSQLCDE--RKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKAS 223
|
Length = 231 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 2e-18
Identities = 67/257 (26%), Positives = 121/257 (47%), Gaps = 30/257 (11%)
Query: 661 PSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSS---MLNTLFRIV 717
++F+ V Y P L+ +SF+IP ++G G+GKS+ ++N L
Sbjct: 1 MKDNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPD 60
Query: 718 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSP------VLFSGTVRFNLDPFSEHSDAD 771
+ +I +DG + + D+R+ +GI+ Q+P V F L+
Sbjct: 61 DNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLEN-------- 112
Query: 772 LWEALERAHLKDAIRR--NSLG-LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 828
A+ R + +R +G LD SE N S GQ+Q ++++ L KI++LDE
Sbjct: 113 --RAVPRPEMIKIVRDVLADVGMLDYIDSEP-ANLSGGQKQRVAIAGILAVEPKIIILDE 169
Query: 829 ATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEE 886
+T+ +D I K IR+ + + T++ I H ++ D++L+LD G++L +P E
Sbjct: 170 STSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVE 229
Query: 887 LLSNEGSSFSKMVQSTG 903
+ S +M++ G
Sbjct: 230 IFSKV-----EMLKEIG 241
|
Length = 282 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 3e-18
Identities = 53/209 (25%), Positives = 90/209 (43%), Gaps = 29/209 (13%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 741
L +SF +P +++G++GR GAGKS++L L I + G + + G + GL
Sbjct: 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLG---- 92
Query: 742 ILGIIPQSPVLFSGT--VRFNLDPFSEHSDADLWEALER----AHLKDAIRRNSLGLDAQ 795
G P+ +G + N S ++ E ++ + L D I D
Sbjct: 93 -GGFNPE----LTGRENIYLNGR-LLGLSRKEIDEKIDEIIEFSELGDFI-------DLP 139
Query: 796 VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTML 855
V +S G + L+ + A IL++DE A D Q+ +RE K +
Sbjct: 140 VK----TYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTV 195
Query: 856 IIA-HRLNTIID-CDRILLLDSGRVLEYD 882
I+ H ++I CDR L+L+ G++
Sbjct: 196 ILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 3e-18
Identities = 64/233 (27%), Positives = 113/233 (48%), Gaps = 41/233 (17%)
Query: 683 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDI--AKFG 735
L ++ I + ++G +G GKS+ L TL R+ +L G +L+DG DI +
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 736 LMDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALER 778
+ LRK +G++ Q P F ++ N LD E S A LW+
Sbjct: 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWD---- 134
Query: 779 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 838
+KD +++++LGL S GQ+Q L ++RAL ++L++DE T+A+D +
Sbjct: 135 -EVKDRLKKSALGL-----------SGGQQQRLCIARALAVEPEVLLMDEPTSALDPIST 182
Query: 839 ALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890
I++ I+E K T++I+ H + D+ +G ++E+ +L +N
Sbjct: 183 LKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFTN 235
|
Length = 250 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 3e-18
Identities = 56/223 (25%), Positives = 106/223 (47%), Gaps = 24/223 (10%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
++ E++ RY + L G+S T+ P G++G GAGK++++ L + G I
Sbjct: 1 LQLENLTKRYGKKR--ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIR 57
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPF-------SEHSDADLWEALE 777
IDG D+ K LR+ +G +PQ ++ TVR LD S+ A + E LE
Sbjct: 58 IDGQDVLKQP-QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLE 116
Query: 778 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 837
+L D ++ S G R+ + +++AL+ IL++DE TA +D
Sbjct: 117 LVNLGDR-------AKKKIGS----LSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEE 165
Query: 838 DALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVL 879
+ + E + +++ H + + C+++ +L+ G+++
Sbjct: 166 RIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLV 208
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.8 bits (211), Expect = 4e-18
Identities = 62/231 (26%), Positives = 105/231 (45%), Gaps = 34/231 (14%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 740
+L +S T+ P + V I+G GAGKS++L L + + G + ++G +A + +L
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELA 75
Query: 741 KILGIIPQSPVL-FSGTVR----FNLDPFSEHSDAD---LWEALER---AHLKDAIRRNS 789
+ ++PQ L F TV P D + AL + AHL R+
Sbjct: 76 RRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAG---RDY 132
Query: 790 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRS------KILVLDEATAAVDVRTDALIQK 843
L S G++Q + L+R L + + L+LDE T+A+D+ + +
Sbjct: 133 PQL-----------SGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLR 181
Query: 844 TIREEFKS--CTMLIIAHRLN-TIIDCDRILLLDSGRVLEYDTPEELLSNE 891
R+ ++++ H LN DRI+LL GR++ TP E+L+ E
Sbjct: 182 LARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLTPE 232
|
Length = 258 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 6e-18
Identities = 54/219 (24%), Positives = 108/219 (49%), Gaps = 11/219 (5%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
I+F +V Y P L G++ +I + V +VG +GAGKS++L +++ G I
Sbjct: 1 IEFINVTKTY-PNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR 59
Query: 726 IDGFDIAKF---GLMDLRKILGIIPQ-SPVLFSGTVRFNLDPFSEHSDADLWEALERAHL 781
++G D++ + LR+ +G++ Q +L V N+ E + E +R +
Sbjct: 60 VNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKR--V 117
Query: 782 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 841
A+ +GL + S G++Q ++++RA++ IL+ DE T +D T I
Sbjct: 118 PAALEL--VGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEI 175
Query: 842 QKTIREEFKSCTMLIIAHRLNTIIDC--DRILLLDSGRV 878
+++ K+ T +++A ++D R++ L+ G++
Sbjct: 176 MNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.0 bits (215), Expect = 6e-18
Identities = 66/218 (30%), Positives = 115/218 (52%), Gaps = 10/218 (4%)
Query: 687 SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI---- 742
S I + I+G +G+GKS+M+ L R++E RG++LIDG DIAK +LR++
Sbjct: 48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK 107
Query: 743 LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 802
+ ++ QS L + F A + R DA+R+ +GL+ +
Sbjct: 108 IAMVFQSFALMPHMTVLDNTAFGMEL-AGINAEERREKALDALRQ--VGLENYAHSYPDE 164
Query: 803 FSVGQRQLLSLSRALLRRSKILVLDEATAAVD--VRTDALIQKTIREEFKSCTMLIIAHR 860
S G RQ + L+RAL IL++DEA +A+D +RT+ + + T++ I+H
Sbjct: 165 LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHD 224
Query: 861 LNTIIDC-DRILLLDSGRVLEYDTPEELLSNEGSSFSK 897
L+ + DRI ++ +G V++ TP+E+L+N + + +
Sbjct: 225 LDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVR 262
|
Length = 400 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 83.3 bits (207), Expect = 8e-18
Identities = 57/220 (25%), Positives = 100/220 (45%), Gaps = 47/220 (21%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLG--------------ELPPVSDASAVIRGT 107
+++ I G + +VG +G GK++L A+LG +L +S IR
Sbjct: 23 DVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRK 82
Query: 108 -VAYVPQVSWIFNA-----TVRDNILFG----------SAFEPARYEKAIDVTSLQHDLD 151
+ V Q ++ T+ + I A + A + V + L+
Sbjct: 83 EIQMVFQDP--MSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLN 140
Query: 152 LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--R 209
P +SGGQ+QRV++ARA+ N + I D+P SALD V Q+ D +
Sbjct: 141 RYPHE-----------LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLK 189
Query: 210 CIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEG 248
++ EL G T + +T+ L ++++ DR+ +++ G + EEG
Sbjct: 190 KLQEEL-GLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 81.3 bits (202), Expect = 8e-18
Identities = 53/217 (24%), Positives = 96/217 (44%), Gaps = 61/217 (28%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
++ + R+ L G+S ++ + ++G GAGKS+++ L + + + G IL
Sbjct: 1 LELRGITKRFGGV--KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL 58
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 785
+DG V F+ +DA
Sbjct: 59 VDG--------------------KEVSFASP-------------------------RDA- 72
Query: 786 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR-TDALIQKT 844
RR + + Q+S VG+RQ++ ++RAL R +++L+LDE TAA+ + L K
Sbjct: 73 RRAGIAMVYQLS-------VGERQMVEIARALARNARLLILDEPTAALTPAEVERLF-KV 124
Query: 845 IREEFKS--CTMLIIAHRLNTIID-CDRILLLDSGRV 878
IR ++ ++ I+HRL+ + + DR+ +L GRV
Sbjct: 125 IR-RLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRV 160
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 2e-17
Identities = 68/280 (24%), Positives = 116/280 (41%), Gaps = 49/280 (17%)
Query: 14 SLKRMEEFLLAEEKILLPNPPLTSGLPAISIRN------GYFSWDSKAERPTLL--NINL 65
L L E+ I LP P +S+RN + +++
Sbjct: 253 GLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSF 312
Query: 66 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--------DASAVIRGTVAYVPQVSWI 117
D+ G + +VG +G GK++L + G LPP S D ++ +
Sbjct: 313 DLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMV 372
Query: 118 F---------NATVRDNI--------LFGSAFEPARYEKAIDVTSLQHD-LDLLPGGDVT 159
F TV D + A AR + +++ L + LD P
Sbjct: 373 FQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHE--- 429
Query: 160 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSG 217
+SGGQ+QRV++ARA+ + I D+P+SALD V QV + + ++ EL G
Sbjct: 430 --------LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEEL-G 480
Query: 218 KTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 256
T + +++ L + + DR+ ++++G + EEG E + N
Sbjct: 481 LTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 2e-17
Identities = 66/210 (31%), Positives = 105/210 (50%), Gaps = 20/210 (9%)
Query: 57 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----------DAS--AV 103
L +I+LDI G LVA++G +G GK++L+ + G P + D S AV
Sbjct: 15 FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAV 74
Query: 104 IRGTVAYVPQ-VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 162
V +V Q + + TV DNI FG R +A ++ L L+ + +
Sbjct: 75 RDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRY 134
Query: 163 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG--ELSGKTR 220
+SGGQ+QRV++ARA+ V + D+P ALDA V R+ R +R + G T
Sbjct: 135 PA--QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKV-RKELRRWLRKLHDRLGVTT 191
Query: 221 VLVT-NQLHFLSQVDRIILVHEGMVKEEGT 249
V VT +Q L DR++++++G +++ G
Sbjct: 192 VFVTHDQEEALELADRVVVLNQGRIEQVGP 221
|
Length = 345 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 82.8 bits (204), Expect = 2e-17
Identities = 57/227 (25%), Positives = 119/227 (52%), Gaps = 13/227 (5%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF------DIAKFG 735
+L ++ IP + GI+G +G+GKS++L L R++E+ +I +DG DI +
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 736 LMDLRKILGIIPQSPVLFSG-TVRFNLD-PFSEHSDADLWEALERAHLKDAIRRNSLGLD 793
+ LRK +G++ Q P F ++ N+ P H + E + +++ +R+ L +
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREI--KKIVEECLRKVGLWKE 142
Query: 794 A--QVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS 851
+++ S GQ+Q L+++RAL + K+L++DE T+ +D+ I+K I E
Sbjct: 143 VYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNE 202
Query: 852 CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSK 897
++I++H + D + L +G ++E+ + E+ ++ + ++
Sbjct: 203 IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTE 249
|
Length = 257 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 2e-17
Identities = 60/214 (28%), Positives = 97/214 (45%), Gaps = 48/214 (22%)
Query: 61 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELPPVSDASAVIRGT------------ 107
L I+ D+ + I G +G GK++L+ + G E P + V+ GT
Sbjct: 15 LKIDFDLN-EEVTGIFGASGAGKSTLLRCIAGLEKPDG--GTIVLNGTVLFDSRKKINLP 71
Query: 108 -----VAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 161
+ V Q +F + VR+N+ FG + E I V L LDLL + +
Sbjct: 72 PQQRKIGLVFQQYALFPHLNVRENLAFGLKRK-RNREDRISVDEL---LDLL---GLDHL 124
Query: 162 GERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS---- 216
R +SGG+KQRV++ARA+ + ++ + D+P SALD + Q + EL
Sbjct: 125 LNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQ-----LLPELKQIKK 179
Query: 217 --GKTRVLVTNQLHFLSQV----DRIILVHEGMV 244
+ VT H LS+ DRI+++ +G +
Sbjct: 180 NLNIPVIFVT---HDLSEAEYLADRIVVMEDGRL 210
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 2e-17
Identities = 57/225 (25%), Positives = 105/225 (46%), Gaps = 39/225 (17%)
Query: 61 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDASAVI----- 104
L+ + +P + AI G +G GKT+LI + G P + D+ I
Sbjct: 14 LDADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPE 73
Query: 105 RGTVAYVPQVSWIF-NATVRDNILFG-----SAFEPARYEKAIDVTSLQHDLDLLPGGDV 158
+ + YV Q + +F + +VR N+ +G + +E+ I++ + H L LPG
Sbjct: 74 KRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPG--- 130
Query: 159 TEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK 218
+SGG+KQRV++ RA+ S+ + + D+PL+ALD ++ R L +
Sbjct: 131 --------RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLER--LHAE 180
Query: 219 TRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLSNNGEL 259
+ + H L +V DR++++ +G V G ++ + +L
Sbjct: 181 FGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDL 225
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 2e-17
Identities = 53/208 (25%), Positives = 98/208 (47%), Gaps = 23/208 (11%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 740
VL +S + + G +G GAGK++ + + +++ + G I DG K ++
Sbjct: 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQK--NIEAL 71
Query: 741 KILGIIPQSPVLFSG-TVRFNLDPFS-----EHSDADLWEALERAHLKDAIRRNSLGLDA 794
+ +G + ++P + T R NL + D E L+ LKD+ ++
Sbjct: 72 RRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRID--EVLDVVGLKDSAKK------- 122
Query: 795 QVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS-CT 853
+V FS+G +Q L ++ ALL +L+LDE T +D +++ I T
Sbjct: 123 KVK----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGIT 178
Query: 854 MLIIAHRLNTI-IDCDRILLLDSGRVLE 880
+LI +H L+ I DRI +++ G+++E
Sbjct: 179 VLISSHLLSEIQKVADRIGIINKGKLIE 206
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 4e-17
Identities = 58/209 (27%), Positives = 106/209 (50%), Gaps = 13/209 (6%)
Query: 685 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 744
G+SF + + G++G GAGK++ + L +++ GR + G D+ + ++R+ +G
Sbjct: 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRRIG 76
Query: 745 IIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRR--NSLGLDAQVSEAGE 801
I+ Q + T NL A L+ + A ++ I + +GL +
Sbjct: 77 IVFQDLSVDDELTGWENLYIH-----ARLY-GVPGAERRERIDELLDFVGLLEAADRLVK 130
Query: 802 NFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAH 859
+S G R+ L ++R+L+ R ++L LDE T +D +T A + + I + E T+L+ H
Sbjct: 131 TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTH 190
Query: 860 RLNTIID-CDRILLLDSGRVLEYDTPEEL 887
+ CDR+ ++D GR++ TPEEL
Sbjct: 191 YMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 4e-17
Identities = 58/234 (24%), Positives = 111/234 (47%), Gaps = 16/234 (6%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
I F++V +Y+ + L +SF IP IVG G+GKS++ + I +++ G I
Sbjct: 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF 67
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPV-LFSGT-----VRFNLDPFSEHSDADLWEALERA 779
+ I LRK +GI+ Q+P F G+ V F L+ + D ++ + A
Sbjct: 68 YNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYD-EMHRRVSEA 126
Query: 780 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 839
LK + + + S GQ+Q ++++ L +++LDEAT+ +D
Sbjct: 127 -LKQ------VDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQ 179
Query: 840 LIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNE 891
+ +R+ + T++ I H L+ ++ D +++++ G V + TP E+ +
Sbjct: 180 NLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233
|
Length = 269 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 5e-17
Identities = 68/241 (28%), Positives = 127/241 (52%), Gaps = 22/241 (9%)
Query: 665 SIKFEDVVLRYRPELP---PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 721
SIK E++ Y P L ++ I + VG++G TG+GKS+++ L +++
Sbjct: 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTS 61
Query: 722 GRILIDGFDIA--KFGLMDLRKILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWEALE 777
G+I+IDG DI K L D+RK +G++ Q P LF T+ ++ +L L
Sbjct: 62 GKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDI----AFGPINL--GLS 115
Query: 778 RAHLKDAIRR--NSLGLDAQVSEAGENF--SVGQRQLLSLSRALLRRSKILVLDEATAAV 833
+++ ++R N +GLD + + F S GQ++ ++++ + KIL+LDE TA +
Sbjct: 116 EEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGL 175
Query: 834 D--VRTDALIQ-KTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889
D R + L + K + +E+ T+++++H + + DRI++++ G+ TP E+
Sbjct: 176 DPKGRDEILNKIKELHKEYNM-TIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234
Query: 890 N 890
Sbjct: 235 E 235
|
Length = 287 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 7e-17
Identities = 115/542 (21%), Positives = 201/542 (37%), Gaps = 72/542 (13%)
Query: 370 TDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPM 429
T +SL L LL + +L + L + +L + IL P+
Sbjct: 43 TADTSL---LVLPEFLGLLLLFM---VSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPL 96
Query: 430 VFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQ----LLSTFVLIGIVSTMSL- 484
R++ D+ RN++ F + ++ Q L + + +S
Sbjct: 97 ERIERLGSARLLAGLTSDV----RNIS-FAFSRLPELVQAIILTLGSAAYLAYLSPKMFL 151
Query: 485 ----WAIMPLLLLFYAAYLYYQ--STAREVKRLDSITRSPVYAQFGEALNG-----LSTI 533
W ++ + F Y+ + ARE T + + L G L+
Sbjct: 152 LTVVWIVVTIWGGFVLMARVYKHMAAARE-------TEDKLQNDYQTILEGRKELTLNRE 204
Query: 534 RAYKAYDRMADINGKSMDKNIRY-TLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGS 592
RA ++ + + + +I ++ A W I L + GL+ WL
Sbjct: 205 RAEYVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLA---------- 254
Query: 593 AENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIE 652
+AST + + L + L T +L + L A + N I AP +
Sbjct: 255 --LSLGWAST-NVAATIVLVLLFLRTPLLSAVGILPTLLTA-QVAFNKIAKLELAPYKAD 310
Query: 653 SNRPPPGWPSSGSIKFEDVVLRYRP---ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSM 709
RP +P +++ +V Y+ + P+ + TI + V ++G G+GKS++
Sbjct: 311 FPRPQA-FPDWKTLELRNVRFAYQDNAFHVGPI----NLTIKRGELVFLIGGNGSGKSTL 365
Query: 710 LNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSD 769
L + + + G IL+DG ++ L D RK+ + LF + + +
Sbjct: 366 AMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL--GPEGKASPQL 423
Query: 770 ADLW-EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 828
+ W + LE AH L S GQ++ L+L ALL ILVLDE
Sbjct: 424 IEKWLQRLELAHKTSLNDGRFSNLK---------LSTGQKKRLALLLALLEERDILVLDE 474
Query: 829 ATAAVDVRTDALIQKTIREEFKSC--TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEE 886
A D + + K T+ I+H + I DR+L + +G++ E T EE
Sbjct: 475 WAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE-LTGEE 533
Query: 887 LL 888
Sbjct: 534 RD 535
|
Length = 546 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 9e-17
Identities = 55/228 (24%), Positives = 94/228 (41%), Gaps = 41/228 (17%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
++ E V + VL ++ ++ + V I+G +G GKS++L + + + G +L
Sbjct: 4 LEIEGVSKSFGGV--EVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVL 61
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNL-------DPFSEHSDADLWEALE 777
+DG + G I G + Q L TV N+ + E LE
Sbjct: 62 LDGRPVTGPG----PDI-GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLE 116
Query: 778 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 837
L D + S G RQ ++++RAL R K+L+LDE A+D T
Sbjct: 117 LVGLAGF-------EDKYPHQ----LSGGMRQRVAIARALATRPKLLLLDEPFGALDALT 165
Query: 838 DALIQK---TIREEFKSCTMLIIAH------RLNTIIDCDRILLLDSG 876
+Q + EE + T+L++ H L DR+++L +
Sbjct: 166 REELQDELLRLWEETR-KTVLLVTHDVDEAVYL-----ADRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 9e-17
Identities = 54/217 (24%), Positives = 103/217 (47%), Gaps = 9/217 (4%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 740
+L+ LS ++P ++G G GKS++L R++ + G + + I+ L
Sbjct: 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLA 75
Query: 741 KILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEAL---ERAHLKDAIRRNSLGLDAQV 796
+ L ++PQ + G TVR L + LW L + A + A+ + ++
Sbjct: 76 RRLALLPQHHLTPEGITVR-ELVAYGRSPWLSLWGRLSAEDNARVNQAMEQ--TRINHLA 132
Query: 797 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE-EFKSCTML 855
+ S GQRQ L+ L + + +++LDE T +D+ + + +RE + T++
Sbjct: 133 DRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVV 192
Query: 856 IIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 891
+ H LN CD +++L +G V+ TPEE+++
Sbjct: 193 TVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTPG 229
|
Length = 255 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 1e-16
Identities = 59/209 (28%), Positives = 94/209 (44%), Gaps = 35/209 (16%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG--------------ELPPVSDASAVIR 105
L I+L + G +V I+G +G GK++L+ + +L +R
Sbjct: 16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELR 75
Query: 106 GTVAYVPQVSWIF-NATVRDNILFG-------SAFEP-ARYEKAIDVTSLQHDLDLLPGG 156
V V Q +F + TV +NI S E R + ++ L D P
Sbjct: 76 QKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPA- 134
Query: 157 DVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS 216
+SGGQ+QRV++ARA+ N V +FD+P SALD + +V D
Sbjct: 135 ----------QLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEE 184
Query: 217 GKTRVLVTNQLHFLSQV-DRIILVHEGMV 244
G T V+VT+++ F +V DR+I + +G +
Sbjct: 185 GMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 1e-16
Identities = 52/221 (23%), Positives = 91/221 (41%), Gaps = 22/221 (9%)
Query: 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 101
++ AE L +I+ +I G V I+G G GK++L+ + G P S
Sbjct: 25 KRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTS-GK 83
Query: 102 AVIRGTVAYVPQVSWIFN--ATVRDNILFGSAFEP-------ARYEKAIDVTSLQHDLDL 152
+ G VA + ++ F+ T R+NI + ++ I+ L +D
Sbjct: 84 VKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFID- 142
Query: 153 LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 212
P S G R++ + A + D+ + D+ L+ DA + +R
Sbjct: 143 QPVK----------TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNE 192
Query: 213 GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFED 252
KT VLV++ L + Q DR I + G ++ EG+ E+
Sbjct: 193 LVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEE 233
|
Length = 249 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 2e-16
Identities = 64/250 (25%), Positives = 112/250 (44%), Gaps = 51/250 (20%)
Query: 662 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 721
+++ +V + + +S I + V ++G +G GK+++L + +
Sbjct: 2 PKPALEIRNVSKSFGD--FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS 59
Query: 722 GRILIDGFDIAKFGLMDL----RKILGIIPQSPVLFS-----GTVRFNLDPFSEHSDADL 772
G IL+DG DI D+ R I G++ QS LF V F L + A++
Sbjct: 60 GEILLDGEDIT-----DVPPEKRPI-GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEI 113
Query: 773 W----EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 828
EALE L+ D + + S GQ+Q ++L+RAL+ K+L+LDE
Sbjct: 114 KARVEEALELVGLEGF-------ADRKPHQ----LSGGQQQRVALARALVPEPKVLLLDE 162
Query: 829 ATAAVD--VRTDALIQKTIREEFKS--CTMLIIAHRLNTIID-------CDRILLLDSGR 877
+A+D +R +K ++E + T + + H D DRI +++ GR
Sbjct: 163 PLSALDAKLREQM--RKELKELQRELGITFVYVTH------DQEEALAMSDRIAVMNDGR 214
Query: 878 VLEYDTPEEL 887
+ + TPEE+
Sbjct: 215 IEQVGTPEEI 224
|
Length = 352 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 3e-16
Identities = 54/234 (23%), Positives = 107/234 (45%), Gaps = 50/234 (21%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP---------------VSDASAV- 103
+ +++ ++ G ++ IVG +G GK++L A++G LP + S
Sbjct: 25 VRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84
Query: 104 ---IRGT-VAYVPQVSW-IFN--ATVRDNI-----LFGSAFEPARYEKAIDVTSLQHDLD 151
+RG +A + Q N T+ D I L G ++A++
Sbjct: 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVE--------- 135
Query: 152 LLPGGDVTEIGERGVN------ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 205
LL + + + +SGG +QRV +A A+ + I D+P +ALD Q
Sbjct: 136 LL---EQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQ 192
Query: 206 VFD--RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 256
+ D + ++ EL G + +T+ L ++++ DR++++++G + E G E++ +N
Sbjct: 193 ILDLLKDLQREL-GMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSN 245
|
Length = 539 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 5e-16
Identities = 60/224 (26%), Positives = 104/224 (46%), Gaps = 29/224 (12%)
Query: 54 KAERPTLLNINLDIPVGSLVAIVGGTGEGKTS-------LISAMLGEL----PPVSDASA 102
+ + N+NL+I G + ++G +G GKT+ LI GE+ + +
Sbjct: 11 GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDP 70
Query: 103 V-IRGTVAYVPQVSWIF-NATVRDNI-----LFGSAFEPARYEKAIDVTSLQHDLDLLPG 155
V +R + YV Q +F + TV +NI L + + + D L + L P
Sbjct: 71 VELRRKIGYVIQQIGLFPHMTVEENIALVPKLLK--WPKEKIRERAD--ELLALVGLDPA 126
Query: 156 GDVTEIGER-GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-G 213
E +R +SGGQ+QRV +ARA+ ++ + + D+P ALD Q+ + R
Sbjct: 127 ----EFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQ 182
Query: 214 ELSGKTRVLVTNQL-HFLSQVDRIILVHEGMVKEEGTFEDLSNN 256
+ GKT V VT+ + DRI ++ G + + GT +++ +
Sbjct: 183 QELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 6e-16
Identities = 76/216 (35%), Positives = 114/216 (52%), Gaps = 31/216 (14%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSL--ISAML-----GEL----PPVSDASAVIRGTV 108
L +I+LDIP G +VA++G +G GKT+L I A L G + VS A R V
Sbjct: 18 LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDR-KV 76
Query: 109 AYVPQVSWIF-NATVRDNILFGSAFEPARYE---KAID--VTSLQHDLDLLPGGDVTEIG 162
+V Q +F + TV DNI FG P R AI VT L L+++ + +
Sbjct: 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQL---LEMV---QLAHLA 130
Query: 163 ER-GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG---ELSGK 218
+R +SGGQKQRV++ARA+ + + D+P ALDA V R+ R +R EL
Sbjct: 131 DRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQV-RKELRRWLRQLHEELK-F 188
Query: 219 TRVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDL 253
T V VT +Q + DR++++ +G +++ GT + +
Sbjct: 189 TSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQV 224
|
Length = 353 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 6e-16
Identities = 61/225 (27%), Positives = 105/225 (46%), Gaps = 25/225 (11%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 740
VL G+ ++ VG+VG GAGK+++L + + G +L+ G D+
Sbjct: 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAAS 76
Query: 741 KILGIIPQSPVL---FSG--TVRFNLDP----FSEHSDADLWEALERAHLKDAIRRNSLG 791
+ + +PQ L F V P F ++ D RA ++ A+ R G
Sbjct: 77 RRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETD------RAAVERAMERT--G 128
Query: 792 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD----VRTDALIQKTIRE 847
+ + S G+RQ + L+RAL + + +L+LDE TA++D VRT L++ + +
Sbjct: 129 VAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVR-RLVD 187
Query: 848 EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 891
+ K+ I H L+ CD ++LL GRV P ++L+ +
Sbjct: 188 DGKTAVAAI--HDLDLAARYCDELVLLADGRVRAAGPPADVLTAD 230
|
Length = 402 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 6e-16
Identities = 62/254 (24%), Positives = 107/254 (42%), Gaps = 34/254 (13%)
Query: 15 LKRMEEFLLAEEK--------ILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLD 66
L+++E L E P P G + N +D R L +++
Sbjct: 287 LEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGG--RLLLKDLSFR 344
Query: 67 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT---VAYVPQ--VSWIFNAT 121
I G +AIVG G GK++L+ + GEL P+S V G + Y Q + T
Sbjct: 345 IDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSG--TVKVGETVKIGYFDQHRDELDPDKT 402
Query: 122 VRDNI--LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 179
V + + F E +V + G D + +SGG+K R+ +A
Sbjct: 403 VLEELSEGFPDGDE-------QEVRAYLGRF-GFTGEDQEKPVG---VLSGGEKARLLLA 451
Query: 180 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV-DRIIL 238
+ + ++ + D+P + LD + + + + G T +LV++ +FL +V RI L
Sbjct: 452 KLLLQPPNLLLLDEPTNHLDIE-SLEALEEALL-DFEG-TVLLVSHDRYFLDRVATRIWL 508
Query: 239 VHEGMVKEEGTFED 252
V + + + EG +ED
Sbjct: 509 VEDKVEEFEGGYED 522
|
Length = 530 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.1 bits (192), Expect = 7e-16
Identities = 60/226 (26%), Positives = 106/226 (46%), Gaps = 23/226 (10%)
Query: 683 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKFGLM 737
L G+S I V +G +G GKS+ L R+ +L G I IDG +I G+
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 738 --DLRKILGIIPQSPVLFSGTV--------RFNLDPFSEHSDADLWEALERAHLKDAIRR 787
+LRK +G++ Q P F ++ R N + + E L+ A L D ++
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKD 138
Query: 788 NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE 847
++ E+ S GQ+Q L ++RA+ +L++DE +A+D + A +++ I E
Sbjct: 139 -------KLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHE 191
Query: 848 EFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSNEG 892
K T++I+ H + D+ G ++EYD +++ +N
Sbjct: 192 LKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTNPE 237
|
Length = 250 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 8e-16
Identities = 59/221 (26%), Positives = 108/221 (48%), Gaps = 44/221 (19%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELPPVSDASAVI---------------- 104
+++L+IP G + I+G +G GK++L+ + E P + +V
Sbjct: 24 DVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERP---TSGSVFVDGQDLTALSEAELRQ 80
Query: 105 -RGTVAYVPQVSWIFN----ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVT 159
R + + Q FN TV +N+ F E A KA + L+L+
Sbjct: 81 LRQKIGMIFQH---FNLLSSRTVFENVAF--PLELAGVPKAEIKQRVAELLELV------ 129
Query: 160 EIGERG----VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRG 213
+ ++ +SGGQKQRV++ARA+ +N + + D+ SALD + + + + I
Sbjct: 130 GLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINR 189
Query: 214 ELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDL 253
EL G T VL+T+++ + ++ DR+ ++ +G + EEGT ++
Sbjct: 190 EL-GLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229
|
Length = 339 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 8e-16
Identities = 67/240 (27%), Positives = 112/240 (46%), Gaps = 31/240 (12%)
Query: 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGEL-PPV 97
AI I N + E+ L NINLDIP + A++G +G GK++L+ ++ + +L P V
Sbjct: 1 AIEIENLNLFY---GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGV 57
Query: 98 SDASAVI----------------RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAI 141
V+ R V V Q F ++ DNI +G + +K +
Sbjct: 58 RIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKEL 117
Query: 142 D---VTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSAL 198
D SL+ L + + + +SGGQ+QR+ +ARA+ +V + D+P SAL
Sbjct: 118 DEIVEESLKKAA--LWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSAL 175
Query: 199 DAHVGRQVFDRCIRGELSGK-TRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 256
D ++ + EL K T V+VT+ + +++ DR ++G + E G E + N
Sbjct: 176 DPIATGKIEELIQ--ELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTN 233
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 8e-16
Identities = 64/212 (30%), Positives = 109/212 (51%), Gaps = 34/212 (16%)
Query: 698 IVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI----LGIIPQSPVLF 753
I+G +G+GKS++L + R++E G++LIDG DIA +LR++ + ++ QS L
Sbjct: 55 IMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALL 114
Query: 754 SG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRR-------NSLGLDAQVSEAGENFSV 805
TV N+ F LE + A R +GL+ + + S
Sbjct: 115 PHRTVLENV-AFG----------LEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSG 163
Query: 806 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC------TMLIIAH 859
G +Q + L+RAL IL++DEA +A+ D LI++ +++E T++ I H
Sbjct: 164 GMQQRVGLARALAVDPDILLMDEAFSAL----DPLIRREMQDELLRLQAELQKTIVFITH 219
Query: 860 RLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 890
L+ + DRI ++ GR+++ TPEE+L+N
Sbjct: 220 DLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 8e-16
Identities = 69/232 (29%), Positives = 107/232 (46%), Gaps = 45/232 (19%)
Query: 41 AISIR--NGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS 98
ISIR N Y+ S + L +INL+I G +V + G +G GKT+L++ + G L V
Sbjct: 1 VISIRNLNHYYGHGS-LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLI-GGLRSVQ 58
Query: 99 DASAVIRGT----------VAYVPQVSWIFNA-------TVRDNILFGSAFEP-----AR 136
+ S + G V + +IF A T R N+ +P
Sbjct: 59 EGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEA 118
Query: 137 YEKAIDVTS---LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 193
E+A + L LD P N+SGGQKQRV++ARA+ + + D+
Sbjct: 119 RERARAMLEAVGLGDHLDYYPH-----------NLSGGQKQRVAIARALVHRPKLVLADE 167
Query: 194 PLSALDAHVGRQVFDRCIRGELS---GKTRVLVTNQLHFLSQVDRIILVHEG 242
P +ALD+ GR V + + +L+ G T ++VT+ L DRI+ + +G
Sbjct: 168 PTAALDSKSGRDVVE--LMQKLAREQGCTILIVTHDNRILDVADRIVHMEDG 217
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 9e-16
Identities = 72/276 (26%), Positives = 113/276 (40%), Gaps = 24/276 (8%)
Query: 686 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI--- 742
+SF IP + VG +G GAGKS+ L L ++ G++ ++G D + LR I
Sbjct: 43 ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLV 102
Query: 743 ----LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSE 798
L + P L S V L E D + E L+ L L+ +
Sbjct: 103 MGQKLQLWWDLPALDSLEV---LKLIYEIPDDEFAERLDFL-------TEILDLEGFLKW 152
Query: 799 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKSCTMLI 856
S+GQR L+ ALL K+L LDE T +DV A I++ ++E E + T+L+
Sbjct: 153 PVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLL 212
Query: 857 IAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVL 915
H + I CDR+LL+D G+++ T +L F + + S +
Sbjct: 213 TTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQ----EQFGPYKEFSVELKQAKSLSQLA 268
Query: 916 GGEAENKLREENKQIDGQRRWLASSRWAAAAQYALA 951
N + D R A A++ +
Sbjct: 269 LLGDVTIEEGLNIKNDVSREESADIIAKLLAEFEVR 304
|
Length = 325 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 1e-15
Identities = 60/236 (25%), Positives = 102/236 (43%), Gaps = 43/236 (18%)
Query: 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA---MLGELPPVS 98
I +R+ + K L +I+LDIP G + A++G +G GK++L+ + +P
Sbjct: 1 IELRDLNVYYGDKH---ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57
Query: 99 DASAV-IRGTVAYVPQVSWI---------------FNATVRDNILFG---SAFEPARYEK 139
D V + G Y V + F ++ DN+ +G +
Sbjct: 58 DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD 117
Query: 140 AIDVTSLQHDLDLLPGGDVTEIGER--GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSA 197
+L+ L E+ +R + +SGGQ+QR+ +ARA+ + +V + D+P SA
Sbjct: 118 ERVEEALR--KAALWD----EVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSA 171
Query: 198 LDAHVGRQVFDRCIRGELSGK-TRVLVTNQLHFLSQV----DRIILVHEGMVKEEG 248
LD + + I EL + T V+VT H + Q DR + G + E G
Sbjct: 172 LDP-ISTAKIEELIA-ELKKEYTIVIVT---HNMQQAARVADRTAFLLNGRLVEFG 222
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 1e-15
Identities = 54/209 (25%), Positives = 90/209 (43%), Gaps = 25/209 (11%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP------------VSDASAVIRGTVA 109
+++ + G + ++G G GKT+L+ + L P V D S V R
Sbjct: 20 DVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGV 79
Query: 110 YVPQVSWIFNATVRDNIL-FGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI 168
+ T R+N+ F +R E + L L LL D R
Sbjct: 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD-----RRVGEF 134
Query: 169 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLH 228
S G KQ+V++ARA+ + + + D+P S LD R+ D + + G+ + + H
Sbjct: 135 STGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSS---H 191
Query: 229 FLSQV----DRIILVHEGMVKEEGTFEDL 253
+ +V DR+I++H+G V EG+ E L
Sbjct: 192 IMQEVEALCDRVIVLHKGEVVLEGSIEAL 220
|
Length = 245 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 1e-15
Identities = 63/243 (25%), Positives = 117/243 (48%), Gaps = 24/243 (9%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
++F DV R+ VL GL+F++ +KV ++G +G+GKS++L L + ++ G+I
Sbjct: 1 VRFSDVTKRFGIL--TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQ 58
Query: 726 IDGFDI-------AKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEA--- 775
++G + D + + + + ++F FNL P D ++ EA
Sbjct: 59 VEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQS---FNLFPHKTVLD-NVTEAPVL 114
Query: 776 ---LERAHLKD-AIRR-NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 830
+ RA + A+ + +GL + S GQ+Q ++++RAL R K+++ DE T
Sbjct: 115 VLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVT 174
Query: 831 AAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 887
+A+D + IR TML++ H + + DR+ D GR++E P+E+
Sbjct: 175 SALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEI 234
Query: 888 LSN 890
Sbjct: 235 FRQ 237
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 2e-15
Identities = 59/220 (26%), Positives = 107/220 (48%), Gaps = 35/220 (15%)
Query: 59 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDASAVI--- 104
L+ N +P + A+ G +G GKTSLI+ + G P + DA I
Sbjct: 13 FALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLP 72
Query: 105 --RGTVAYVPQVSWIF-NATVRDNILFGSAF-EPARYEKAIDVTSLQHDLDLLPGGDVTE 160
+ + YV Q + +F + TVR N+ +G A++++ + + ++H LD PG
Sbjct: 73 PEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPG----- 127
Query: 161 IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTR 220
+SGG+KQRV++ RA+ + ++ + D+PL++LD R++ R L +
Sbjct: 128 ------TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLER--LRDEIN 179
Query: 221 VLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLSNN 256
+ + H L +V DR++++ G VK G E++ +
Sbjct: 180 IPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219
|
Length = 352 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 2e-15
Identities = 58/239 (24%), Positives = 107/239 (44%), Gaps = 34/239 (14%)
Query: 666 IKFEDVVLRYRPELPPV--LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 723
++ + R+ P V +S ++ + ++G GAGKS+++ LF + + + G
Sbjct: 5 LEMRGITKRF----PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGE 60
Query: 724 ILIDG--------FDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWE 774
I +DG D + G+ G++ Q +L TV N+ E
Sbjct: 61 IRVDGKEVRIKSPRDAIRLGI-------GMVHQHFMLVPTLTVAENIILGLE-PSKGGLI 112
Query: 775 ALERAH--LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 832
+A +K+ R GL + SVG++Q + + +AL R +++L+LDE TA
Sbjct: 113 DRRQARARIKELSER--YGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAV 170
Query: 833 V-DVRTDALIQ--KTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLE-YDTPEE 886
+ D L + + + E K T++ I H+L ++ DR+ +L G+V+ D E
Sbjct: 171 LTPQEADELFEILRRLAAEGK--TIIFITHKLKEVMAIADRVTVLRRGKVVGTVDPVAE 227
|
Length = 501 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 2e-15
Identities = 65/242 (26%), Positives = 117/242 (48%), Gaps = 50/242 (20%)
Query: 36 TSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP 95
+S P + +R S+D K + N++L I G + ++G +G GKT+++ ++
Sbjct: 9 SSLSPLVELRGISKSFDGK---EVISNLDLTINNGEFLTLLGPSGCGKTTVLR-LIAGFE 64
Query: 96 PVSDASAVIRG-TVAYVP----QVSWIFNA-------TVRDNILFG--------SAFEPA 135
++ G + +VP V+ +F + TV +N+ FG + P
Sbjct: 65 TPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITP- 123
Query: 136 RYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDP 194
R +A+ + L+ E +R +SGGQ+QRV++ARAV + V + D+
Sbjct: 124 RVMEALRMVQLE------------EFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDES 171
Query: 195 LSALDAHVGRQVFDRCIRGELS------GKTRVLVT-NQLHFLSQVDRIILVHEGMVKEE 247
LSALD + +Q ++ EL G T V VT +Q L+ DRI+++ +G ++++
Sbjct: 172 LSALDYKLRKQ-----MQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQD 226
Query: 248 GT 249
GT
Sbjct: 227 GT 228
|
Length = 375 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 2e-15
Identities = 61/215 (28%), Positives = 103/215 (47%), Gaps = 30/215 (13%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT------------ 107
L ++L++P G + ++G G GKT+L+ ++G LP S + G
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPV-KSGSIRLDGEDITKLPPHERAR 74
Query: 108 --VAYVPQVSWIFNA-TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE--IG 162
+AYVPQ IF TV +N+L G A P R + I +L P V + +G
Sbjct: 75 AGIAYVPQGREIFPRLTVEENLLTGLAALPRR-SRKIP----DEIYELFP---VLKEMLG 126
Query: 163 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR--GELSGKTR 220
RG ++SGGQ+Q++++ARA+ + + + D+P + + + + R IR G
Sbjct: 127 RRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDI-GRVIRRLRAEGGMAI 185
Query: 221 VLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLS 254
+LV L F ++ DR ++ G V G ++L
Sbjct: 186 LLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 2e-15
Identities = 69/238 (28%), Positives = 129/238 (54%), Gaps = 21/238 (8%)
Query: 663 SGSIKFEDVVLRYRPELP-PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 721
S I+ +++ +Y+ + L+ +SF + + + I+G G+GKS+ + + ++E E
Sbjct: 2 SNIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAES 61
Query: 722 GRILIDGFDIAKFGLMDLRKILGIIPQSP-VLFSGT-----VRFNLDPFSEHSDADLWEA 775
G+I+IDG + + + D+R +G++ Q+P F G V F L E+ E
Sbjct: 62 GQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGL----ENKGIPHEEM 117
Query: 776 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 835
ER + +A+ +G+ S GQ+Q ++++ A+ R KI++LDEAT+ +D
Sbjct: 118 KERVN--EAL--ELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDP 173
Query: 836 --RTDALIQ--KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 889
R + LI+ K IR++++ T++ I H L+ + DR+L++ +G+V TP EL S
Sbjct: 174 EGRLE-LIKTIKGIRDDYQ-MTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFS 229
|
Length = 279 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 2e-15
Identities = 60/232 (25%), Positives = 108/232 (46%), Gaps = 32/232 (13%)
Query: 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM-LGELP---- 95
+I + + + L +I LD P G + ++G +G GK+SL+ + L E+P
Sbjct: 2 SIQLNGINCFYGAHQ---ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGT 58
Query: 96 -------------PVSDASAVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAI 141
P A +R V V Q ++ + TV++N++ P R
Sbjct: 59 LNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEA----PCRVLGLS 114
Query: 142 DVTSLQHDLDLLPGGDVTEIGER-GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 200
+L LL + +R +++SGGQ+QRV++ARA+ V +FD+P +ALD
Sbjct: 115 KDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP 174
Query: 201 HVGRQVFDRCIRGELSGK--TRVLVTNQLHFLSQV-DRIILVHEGMVKEEGT 249
+ Q+ I EL+ T+V+VT+++ + R++ + G + E+G
Sbjct: 175 EITAQIVS--IIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGD 224
|
Length = 242 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 78.4 bits (193), Expect = 3e-15
Identities = 70/238 (29%), Positives = 120/238 (50%), Gaps = 32/238 (13%)
Query: 683 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LER---GRILIDGFDIAKFGLMD 738
L+ +S +P G++G +GAGKS TL R V LER G +++DG D+ +
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKS----TLIRCVNLLERPTSGSVIVDGQDLTTLSNSE 76
Query: 739 L---RKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHL-KDAIRRNS----- 789
L R+ +G+I Q L S F ++ LE + KD I+R
Sbjct: 77 LTKARRQIGMIFQHFNLLSSRTVF----------GNVALPLELDNTPKDEIKRKVTELLA 126
Query: 790 -LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREE 848
+GL + N S GQ+Q ++++RAL K+L+ DEAT+A+D T I + ++E
Sbjct: 127 LVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEI 186
Query: 849 FKS--CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS-KMVQST 902
+ T+L+I H ++ + CD + ++ +G ++E T E+ S+ + + K ++ST
Sbjct: 187 NRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQKFIRST 244
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 3e-15
Identities = 61/235 (25%), Positives = 125/235 (53%), Gaps = 25/235 (10%)
Query: 670 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF 729
D+ Y P+ L G++F + V ++G GAGKS++ I++ G +LI G
Sbjct: 6 DLKYSY-PDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGE 64
Query: 730 DIA--KFGLMDLRKILGIIPQSP--VLFSGTVR-------FNLDPFSEHSDADLWEALER 778
I K L+++RK +GI+ Q+P LF+ TV NL S+ E +E+
Sbjct: 65 PIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLG-LSK-------EEVEK 116
Query: 779 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 838
+K+A++ +G++ ++ + S GQ++ ++++ L + +I+VLDE T+ +D
Sbjct: 117 -RVKEALKA--VGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGA 173
Query: 839 ALIQKTIRE-EFKSCTMLIIAHRLNTI-IDCDRILLLDSGRVLEYDTPEELLSNE 891
+ I K + + + T++I H ++ + + D++ ++ G++++ TP+E+ S+
Sbjct: 174 SQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDI 228
|
Length = 275 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.2 bits (187), Expect = 3e-15
Identities = 65/228 (28%), Positives = 114/228 (50%), Gaps = 31/228 (13%)
Query: 683 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LER----GRILIDGFDI--AKFG 735
LHG+S + ++G +G GKS+ L L R+ + +E G I +G +I +K
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 736 LMDLRKILGIIPQSPVLFSGTVRFNLD--------PFSEHSDADLWEALERAHL----KD 783
L++LRK +G++ Q P F +V N+ E D + E+L++A + KD
Sbjct: 80 LVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKD 139
Query: 784 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 843
+ RN+ + FS GQ+Q + ++RAL R K+++LDE T+A+D + + I++
Sbjct: 140 NLDRNA-----------QAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEE 188
Query: 844 TIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890
T+ E T +++ H L D+ L +G ++E EE+
Sbjct: 189 TLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIA 236
|
Length = 251 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.1 bits (187), Expect = 3e-15
Identities = 59/222 (26%), Positives = 107/222 (48%), Gaps = 23/222 (10%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LR 740
V+ +S T+ + VG++G GAGK++ + IV + G I+ID DI+ L R
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARAR 77
Query: 741 KILGIIPQSPVLFS---------GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLG 791
+ +G +PQ +F ++ D +E + E +E H++ R+S+
Sbjct: 78 RGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHL--RDSM- 134
Query: 792 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS 851
G++ S G+R+ + ++RAL K ++LDE A VD + I++ I S
Sbjct: 135 --------GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDS 186
Query: 852 -CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 891
+LI H + + C+R ++ G ++ + TP E+L +E
Sbjct: 187 GLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDE 228
|
Length = 241 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 4e-15
Identities = 50/204 (24%), Positives = 92/204 (45%), Gaps = 31/204 (15%)
Query: 58 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--------DASAV----IR 105
P L N++ + G + IVG TG GK++LI A+ L D S + +R
Sbjct: 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLR 81
Query: 106 GTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERG 165
++ +PQ +F+ T+R N+ D D ++ + E G
Sbjct: 82 SSLTIIPQDPTLFSGTIRSNL---------------DPFDEYSDEEIY---GALRVSEGG 123
Query: 166 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTN 225
+N+S GQ+Q + +ARA+ V + D+ +++D + + IR E + T + + +
Sbjct: 124 LNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALI-QKTIREEFTNSTILTIAH 182
Query: 226 QLHFLSQVDRIILVHEGMVKEEGT 249
+L + D+I+++ G VKE
Sbjct: 183 RLRTIIDYDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 5e-15
Identities = 46/167 (27%), Positives = 72/167 (43%), Gaps = 17/167 (10%)
Query: 52 DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKT-------SLISAMLGEL----PPVSDA 100
+ L NI+L + G +AI G +G GK+ SLIS G L VS
Sbjct: 11 YLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTL 70
Query: 101 SA-VIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVT 159
R V+Y Q +F TV DN++F R ++A + L L +
Sbjct: 71 KPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLA-RFAL----PDS 125
Query: 160 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 206
+ + +SGG+KQR+++ R + + + D+ SALD R +
Sbjct: 126 ILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNI 172
|
Length = 223 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 5e-15
Identities = 61/216 (28%), Positives = 101/216 (46%), Gaps = 21/216 (9%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-R 740
+L G+S +P + ++GR G GK+++L TL ++ ++ G I +DG DI K + R
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74
Query: 741 KILGIIPQSPVLFSG-TVRFNL----DPFSEHSDADLWEALER-AHLKDAIRRNSLGLDA 794
+ +PQ +F TV NL S E E LK+ + R
Sbjct: 75 AGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRR------ 128
Query: 795 QVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKSC 852
G + S GQ+Q L+++RAL+ R K+L+LDE T + I + IR
Sbjct: 129 -----GGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGM 183
Query: 853 TMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEEL 887
+L++ L+ + DR +++ GRV+ +EL
Sbjct: 184 AILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 5e-15
Identities = 54/221 (24%), Positives = 102/221 (46%), Gaps = 17/221 (7%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
++ E+V R+ L +SF++ + G++G GAGK++ + + I+ + G +L
Sbjct: 1 LEVENVTKRFGRV--TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVL 58
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDA 784
DG + +I G +P+ L+ V L ++ EA R
Sbjct: 59 FDG---KPLDIAARNRI-GYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRR------ 108
Query: 785 IRR--NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 842
I L L ++ E S G +Q + A++ ++L+LDE + +D L++
Sbjct: 109 IDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLK 168
Query: 843 KTIREEFKSCTMLII-AHRLNTIID-CDRILLLDSGRVLEY 881
IRE ++ +I+ H++ + + CDR+LLL+ GR + Y
Sbjct: 169 DVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLY 209
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 6e-15
Identities = 72/252 (28%), Positives = 120/252 (47%), Gaps = 34/252 (13%)
Query: 652 ESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLN 711
E+ PG S+ +I V Y + V++GLSFT+ + G++G GAGKS++
Sbjct: 28 EAKASIPGSMSTVAIDLAGVSKSYGDK--AVVNGLSFTVASGECFGLLGPNGAGKSTIAR 85
Query: 712 TLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVL-FSGTVRFNLDPFSEH--- 767
+ + + G+I + G + + +I G++PQ L TVR NL F +
Sbjct: 86 MILGMTSPDAGKITVLGVPVPARARLARARI-GVVPQFDNLDLEFTVRENLLVFGRYFGM 144
Query: 768 ----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 823
+A + LE A L+ DA+VS+ S G ++ L+L+RAL+ ++
Sbjct: 145 STREIEAVIPSLLEFARLESKA-------DARVSD----LSGGMKRRLTLARALINDPQL 193
Query: 824 LVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAH------RLNTIIDCDRILLLDSG 876
L+LDE T +D LI + +R + T+L+ H RL CDR+ +L++G
Sbjct: 194 LILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERL-----CDRLCVLEAG 248
Query: 877 RVLEYDTPEELL 888
R + P L+
Sbjct: 249 RKIAEGRPHALI 260
|
Length = 340 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 6e-15
Identities = 48/188 (25%), Positives = 91/188 (48%), Gaps = 12/188 (6%)
Query: 677 PELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG--FDIAKF 734
P P VL GL+F + + ++G GAGKS++L L ++ + G +LIDG D ++
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK 61
Query: 735 GLMDLRKILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRR--NSL 790
GL++ R+ +G++ Q P LF+ V + + L L A ++ +R ++
Sbjct: 62 GLLERRQRVGLVFQDPDDQLFAADV------DQDVAFGPLNLGLSEAEVERRVREALTAV 115
Query: 791 GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK 850
G S G+++ ++++ A+ R +L+LDE TA +D + +R
Sbjct: 116 GASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRA 175
Query: 851 SCTMLIIA 858
++I+
Sbjct: 176 EGMTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 6e-15
Identities = 65/235 (27%), Positives = 112/235 (47%), Gaps = 43/235 (18%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAKFGL 736
VL G++ IP + ++G +G+GKS++L R++EL G + +DG DI K +
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77
Query: 737 MDLRKILGIIPQSPVLFSGTVRFNLDPFSE-----------HSDADLWE----ALERAHL 781
++LR+ + ++ Q P NL F S +L E ALE+A L
Sbjct: 78 IELRRRVQMVFQIPNPIP-----NLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQL 132
Query: 782 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 841
D ++ + L A S GQ+Q L ++RAL + ++L+ DE TA +D A I
Sbjct: 133 WDEVK-DRLDAPAG------KLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKI 185
Query: 842 QKTIREEFKSCTMLIIAH------RLNTIIDCDRILLLDSGRVLEYDTPEELLSN 890
+ E K T++++ H R++ D + L G+++E+ E+ +N
Sbjct: 186 ESLFLELKKDMTIVLVTHFPQQAARIS-----DYVAFLYKGQIVEWGPTREVFTN 235
|
Length = 250 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 6e-15
Identities = 64/242 (26%), Positives = 120/242 (49%), Gaps = 24/242 (9%)
Query: 665 SIKFEDVVLRYRPELPPVLHGL---SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 721
SIKFE+V Y P P GL SF + V +VG TG+GKS+++ +++
Sbjct: 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSS 61
Query: 722 GRILIDGFDI----AKFGLMDLRKILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWEA 775
G I I G+ I L LRK + ++ Q P LF TV +++ ++ EA
Sbjct: 62 GTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEA 121
Query: 776 LERAHLKDAIRRNSLGLDAQVSEAGE-NFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 834
E+A +++ +GL + S GQ + ++++ + +IL LDE A +D
Sbjct: 122 KEKA--LKWLKK--VGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLD 177
Query: 835 VRTDALIQKTIREEFKSC-----TMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 888
+K + + FK T++++ H ++ + + D +L+L+ G+++++ +P+E+
Sbjct: 178 PEG----RKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIF 233
Query: 889 SN 890
S+
Sbjct: 234 SD 235
|
Length = 287 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 7e-15
Identities = 61/242 (25%), Positives = 110/242 (45%), Gaps = 42/242 (17%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKF 734
+L ++ I + +G +G GKS+ L R+ + +G + IDG D+
Sbjct: 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79
Query: 735 GLMDLRKILGIIPQSPVLFSGTVRFN----------------LDPFSEHS--DADLWEAL 776
++ LR +G++ Q P F ++ N LD E S LWE
Sbjct: 80 NVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWE-- 137
Query: 777 ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 836
L D ++ ++ S GQ+Q L ++RA+ + +L++DE +A+D
Sbjct: 138 ---ELGDRLKDSAF-----------ELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPV 183
Query: 837 TDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 895
+I+ I+E K+ T++++ H + DR+ SGR++EY+T +E+ N SS
Sbjct: 184 ATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNPQSSK 243
Query: 896 SK 897
+K
Sbjct: 244 TK 245
|
Length = 251 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 7e-15
Identities = 65/246 (26%), Positives = 121/246 (49%), Gaps = 42/246 (17%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
I+F++V + P VLH + I + V I+G +G+GKS++L + ++ E+ G ++
Sbjct: 2 IEFKNVSKHFGPT--QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLI 59
Query: 726 IDGFDI--AKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALE------ 777
+DG + K +R+ G++ Q +F L P ALE
Sbjct: 60 VDGLKVNDPKVDERLIRQEAGMVFQ---------QFYLFPH--------LTALENVMFGP 102
Query: 778 ---RAHLKDAIRRNSLGLDAQV--SEAGENF----SVGQRQLLSLSRALLRRSKILVLDE 828
R K+ + + L A+V +E ++ S GQ+Q ++++RAL + K+++ DE
Sbjct: 103 LRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDE 162
Query: 829 ATAAVD--VRTDAL-IQKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTP 884
T+A+D +R + L + + + EE TM+I+ H + R++ +D GR+ E P
Sbjct: 163 PTSALDPELRHEVLKVMQDLAEE--GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDP 220
Query: 885 EELLSN 890
+ L+ N
Sbjct: 221 QVLIKN 226
|
Length = 240 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 7e-15
Identities = 57/224 (25%), Positives = 109/224 (48%), Gaps = 30/224 (13%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI--------VELERGRILIDGFDI-- 731
+ ++ I + I+G +G GK+++L ++ R+ VE G+I G DI
Sbjct: 18 AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVE---GKIYFKGQDIYD 74
Query: 732 AKFGLMDLRKILGIIPQSPVLFSGTVRFNLD--------PFSEHSDADLWEALERAHLKD 783
+ + + RK +G++ Q P F ++ N+ D + E+L++A L D
Sbjct: 75 PQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWD 134
Query: 784 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 843
++ ++++ G S GQ+Q L ++RAL ++++LDE T+A+D I+K
Sbjct: 135 EVKS-------ELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEK 187
Query: 844 TIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEY-DTPE 885
+ E ++ T++I+ H + I D I + G ++EY T E
Sbjct: 188 LLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTRE 231
|
Length = 250 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 8e-15
Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 44/223 (19%)
Query: 53 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP------VSDAS----- 101
K +P + +++L++ G + ++G G GKT+ + + GEL P ++ S
Sbjct: 11 KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR 70
Query: 102 AVIRGTVAYVPQVSWIFNA-----TVRDNILFGSAF-------EPARYEKAIDVTSLQHD 149
R ++ Y PQ F+A TVR+++ F + E + V L
Sbjct: 71 KAARQSLGYCPQ----FDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDK 126
Query: 150 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 209
+ +SGG K+++S+A A+ V + D+P S LD R ++D
Sbjct: 127 ANKRAR-----------TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWD- 174
Query: 210 CIRGELSGKTRVLVTNQLH---FLSQVDRIILVHEGMVKEEGT 249
I G++ +L T+ + L DRI ++ +G ++ G+
Sbjct: 175 LILEVRKGRSIILTTHSMDEAEALC--DRIAIMSDGKLRCIGS 215
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 8e-15
Identities = 55/200 (27%), Positives = 98/200 (49%), Gaps = 18/200 (9%)
Query: 70 GSLVAIVGGTGEGKTSLISAMLGELPPV-------SDASAVIRGTVAYVPQ---VSWIFN 119
G L+ ++G G GKT+L+ A+LG +PP + + YVPQ +W F
Sbjct: 6 GELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFP 65
Query: 120 ATVRDNILFGSA--FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGGQKQRV 176
+V ++ G R D +++ L + +TE+ +R V +SGGQ+QRV
Sbjct: 66 ISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRV---GLTELADRPVGELSGGQRQRV 122
Query: 177 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL-HFLSQVDR 235
+ARA+ + V + D+P + LD + + I +G ++ T+ L ++ DR
Sbjct: 123 LVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDR 182
Query: 236 IILVHEGMVKEEGTFEDLSN 255
++L++ G V +GT + L +
Sbjct: 183 VVLLN-GRVIADGTPQQLQD 201
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 9e-15
Identities = 55/232 (23%), Positives = 103/232 (44%), Gaps = 46/232 (19%)
Query: 57 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVA------- 109
L ++NL+I G +VAI+G +G GK++L+ ++ G + P + + G
Sbjct: 17 HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDP-TSGEILFNGVQITKLKGKE 75
Query: 110 ---YVPQVSWIF-------NATVRDNILFG------------SAFEPARYEKAIDVTSLQ 147
+ IF +V +N+L G F +A+D +L+
Sbjct: 76 LRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALD--ALE 133
Query: 148 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 207
+ +L + +R +SGGQ+QRV++ARA+ + + D+P+++LD ++V
Sbjct: 134 R-VGILD-----KAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVM 187
Query: 208 DRCIR-GELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLS 254
D + G T ++ LH + DRII + G + +G +L+
Sbjct: 188 DILKDINQEDGITVIVN---LHQVDLAKKYADRIIGLKAGRIVFDGPASELT 236
|
Length = 258 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 1e-14
Identities = 63/243 (25%), Positives = 103/243 (42%), Gaps = 36/243 (14%)
Query: 40 PAISIRNGYFSWDSKAERPTLLN-INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS 98
+S+RN + LN ++L+I G + IVG +G GK++L + G P S
Sbjct: 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSS 61
Query: 99 -------------DASAVIRGTVAYVPQVSW-IFNA--TVRDNILFGSAFEPARYEKAID 142
+ V V Q + N TV + EP R
Sbjct: 62 GSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRIL-----SEPLRPHGLSK 116
Query: 143 VTSLQHDLDLLPGGDVTEIGE-----RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSA 197
S Q +LL D + R +SGGQ+QR+++ARA+ + I D+P SA
Sbjct: 117 --SQQRIAELL---DQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSA 171
Query: 198 LDAHVGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLS 254
LD V Q+ + ++ E G T + +++ L + + DRI ++ G + E G E+L
Sbjct: 172 LDVSVQAQILNLLLELKKER-GLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230
Query: 255 NNG 257
++
Sbjct: 231 SHP 233
|
Length = 252 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 1e-14
Identities = 60/226 (26%), Positives = 109/226 (48%), Gaps = 26/226 (11%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 741
L ++ +P V ++G +G+GKS++L + + + + GRI ++G D + D RK
Sbjct: 15 ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARD-RK 73
Query: 742 ILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 800
I G + Q LF TVR N+ A E + K R L Q+ G
Sbjct: 74 I-GFVFQHYALFKHLTVRDNI--------AFGLEIRKHPKAKIKARVEELLELVQLEGLG 124
Query: 801 ENF----SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR-------EEF 849
+ + S GQRQ ++L+RAL ++L+LDE A+ DA ++K +R +E
Sbjct: 125 DRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGAL----DAKVRKELRSWLRKLHDEV 180
Query: 850 KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 895
T+ + + + DRI+++ +G++ + +P+E+ + + F
Sbjct: 181 HVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPF 226
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 1e-14
Identities = 64/254 (25%), Positives = 105/254 (41%), Gaps = 64/254 (25%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
I E++ L Y P+L +S T+ P +++G+VGR GAGKS++L L +E + G +
Sbjct: 4 ITLENLSLAYGDR--PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVT 61
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALER------ 778
LR +G + Q P L TV + +L E L
Sbjct: 62 RPK---------GLR--VGYLSQEPPLDPEKTVLDYV----IEGFGELRELLAELEEAYA 106
Query: 779 ------AHLKDAIRRNSLGLDAQVSEAG-----------------ENFSVGQRQLLSLSR 815
L + LD EA + S G R+ ++L+R
Sbjct: 107 LLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALAR 166
Query: 816 ALLRRSKILVLDEATAAVDVRTDALIQKTIR--EEF---KSCTMLIIAH-R--LNTIIDC 867
ALL +L+LDE T +D+ ++I E++ T+++++H R L+ +
Sbjct: 167 ALLEEPDLLLLDEPTNHLDL-------ESIEWLEDYLKRYPGTVIVVSHDRYFLDNV--A 217
Query: 868 DRILLLDSGRVLEY 881
IL LD G++ Y
Sbjct: 218 THILELDRGKLTPY 231
|
Length = 530 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 1e-14
Identities = 62/232 (26%), Positives = 114/232 (49%), Gaps = 14/232 (6%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
I+ ED+ RY+ + L GLS +IP K ++G GAGKS++L L I +RGR+
Sbjct: 5 IEVEDLHFRYK-DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSP--VLFSGTV--RFNLDPFSEHSDADLWEALERAHL 781
+ G ++ +R +G++ Q P +FS TV P + D D E R
Sbjct: 64 VMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKD--EVERRV-- 119
Query: 782 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 841
++A++ ++ + + + S GQ++ ++++ L ++VLDE A +D R +
Sbjct: 120 EEALK--AVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETL 177
Query: 842 QKTIREEFKSCTMLIIA-HRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 891
+ + +I+A H ++ + D++++L GRVL LL++E
Sbjct: 178 MEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDK-SLLTDE 228
|
Length = 274 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 1e-14
Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 48/195 (24%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
I+ E++ L P+ +L LSF I P D++ I G +G GKSS+ L + GRI
Sbjct: 1 IELENLSL-ATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI- 58
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 785
G+ + +L +PQ P L GT L++ +
Sbjct: 59 ---------GMPEGEDLL-FLPQRPYLPLGT------------------------LREQL 84
Query: 786 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 845
+ S G++Q L+ +R LL + K + LDEAT+A+D ++ + + +
Sbjct: 85 IYPW----------DDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLL 134
Query: 846 REEFKSCTMLIIAHR 860
+E T++ + HR
Sbjct: 135 KELG--ITVISVGHR 147
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 1e-14
Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 14/170 (8%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 740
+ GLSFT+ + + + G G GK+++L L ++ + G + +G +A+ R
Sbjct: 14 MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHR 73
Query: 741 KILGIIPQSPVLFSGTVRFNLD---PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVS 797
IL + + + NL + + +AL L + L
Sbjct: 74 NILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQL----- 128
Query: 798 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE 847
S GQ++ L+L+R L R+ + +LDE T A+D AL+ +R
Sbjct: 129 ------SAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRA 172
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 2e-14
Identities = 54/213 (25%), Positives = 103/213 (48%), Gaps = 16/213 (7%)
Query: 686 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG---FDIAK-FGLMDLRK 741
FT+P I GR+G+GK++++ + + + G I+++G FD K L ++
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75
Query: 742 ILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 800
+G + Q LF +VR NL + + ER + + LG+ +
Sbjct: 76 RIGYVFQEARLFPHLSVRGNLRYGMKRARPS-----ERRISFERVIE-LLGIGHLLGRLP 129
Query: 801 ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV-RTDALIQ--KTIREEFKSCTMLII 857
S G++Q +++ RALL ++L++DE AA+D R ++ + + EF +L +
Sbjct: 130 GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFG-IPILYV 188
Query: 858 AHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889
+H L ++ DR+++L+ GRV E+ +
Sbjct: 189 SHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWA 221
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 2e-14
Identities = 64/213 (30%), Positives = 115/213 (53%), Gaps = 27/213 (12%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI---AKFGLMD 738
VL ++ I P + V + G +G+GK+++L + + ++ G + + G ++ ++ L+
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 739 LRKILGIIPQSPVLF-SGTVRFN------LDPFSEHSDADLWEALERAHLKDAIRRNSLG 791
LR+ +G I Q+ L T R N L P + +A RA L+ ++G
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEA---RERARAMLE------AVG 130
Query: 792 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD----ALIQKTIRE 847
L + N S GQ+Q ++++RAL+ R K+++ DE TAA+D ++ L+QK RE
Sbjct: 131 LGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLARE 190
Query: 848 EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVL 879
+ CT+LI+ H N I+D DRI+ ++ G++L
Sbjct: 191 --QGCTILIVTHD-NRILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 2e-14
Identities = 53/205 (25%), Positives = 95/205 (46%), Gaps = 15/205 (7%)
Query: 675 YRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF 734
Y +L+ +SF++ + I G +G GKS++L + ++ G +L +G DI+
Sbjct: 15 YLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTL 74
Query: 735 GLMDLRKILGIIPQSPVLFSGTVRFNLD-PFSEHSDADLWEALERAHLKDAIRRNSLGLD 793
R+ + Q+P LF TV NL P+ + + A D + R L
Sbjct: 75 KPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQP-----DPAIFLDDLER--FALP 127
Query: 794 AQVSEAGEN-FSVGQRQLLSLSRALLRRSKILVLDEATAAVD----VRTDALIQKTIREE 848
+ S G++Q +SL R L K+L+LDE T+A+D + +I + +RE
Sbjct: 128 DTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVRE- 186
Query: 849 FKSCTMLIIAHRLNTIIDCDRILLL 873
++ +L + H + I D+++ L
Sbjct: 187 -QNIAVLWVTHDKDEINHADKVITL 210
|
Length = 225 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 2e-14
Identities = 58/234 (24%), Positives = 110/234 (47%), Gaps = 43/234 (18%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF---GLMD 738
+ G+S T+ +G+VG +G+GKS++ L R++ +G I DG DI +
Sbjct: 302 AVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP-SQGEIRFDGQDIDGLSRKEMRP 360
Query: 739 LRKILGIIPQSPVLFSGTVRFNLDP--------------FSEHSDADLWEALERAHLKDA 784
LR+ + ++ Q P + +L P A E +R +A
Sbjct: 361 LRRRMQVVFQDP--YG-----SLSPRMTVGQIIEEGLRVHEPKLSAA--ERDQRV--IEA 409
Query: 785 IRRNSLGLD-AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 843
+ +GLD A + FS GQRQ ++++RAL+ + ++++LDE T+A+D +Q
Sbjct: 410 LE--EVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRS----VQA 463
Query: 844 TIREEFKS------CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890
+ + + + L I+H L + C R++++ G+++E E + +N
Sbjct: 464 QVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFAN 517
|
Length = 534 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 75.8 bits (186), Expect = 2e-14
Identities = 62/259 (23%), Positives = 115/259 (44%), Gaps = 31/259 (11%)
Query: 662 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE- 720
+ G I+ + + + Y VL LS I + + ++G++G GK+++L + V+
Sbjct: 2 ACGGIRIDHLRVAYGANT--VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAG 59
Query: 721 -RGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS----EHSDADLWE- 774
GRI I D+ ++ L ++ Q+ LF + F + AD+ E
Sbjct: 60 LTGRIAIADRDLTH--APPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAER 117
Query: 775 ---ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 831
AL+ L DA L AQ+S G +Q ++++RA+ +L+LDE +
Sbjct: 118 VADALKLVGLGDAAAH----LPAQLSG-------GMQQRIAIARAIAIEPDVLLLDEPLS 166
Query: 832 AVDVRTDALIQ---KTIREEFKSCTMLIIAH-RLNTIIDCDRILLLDSGRVLEYDTPEEL 887
A+D A ++ + EE T+L + H + + + D+ ++ GR+ + P+ L
Sbjct: 167 ALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226
Query: 888 LSNEGSSFSKMVQSTGAAN 906
F+ + GAAN
Sbjct: 227 YDAPADGFA--AEFLGAAN 243
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 2e-14
Identities = 51/205 (24%), Positives = 95/205 (46%), Gaps = 24/205 (11%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 741
+L L+ TI I+G +G+GKS++LN + + + + G++ ++G + K
Sbjct: 13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASK 72
Query: 742 I----LGIIPQSPVLF-SGTVRFNLD---PFSEHSDAD----LWEALERAHLKDAIRRNS 789
LG + Q+ L + TV NLD + + S + EALE+ L +
Sbjct: 73 FRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGL-------N 125
Query: 790 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF 849
L L ++ E S G++Q ++L+RA+L+ +++ DE T ++D + + + E
Sbjct: 126 LKLKQKIYE----LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELN 181
Query: 850 KSCTMLIIA-HRLNTIIDCDRILLL 873
+II H DR++ L
Sbjct: 182 DEGKTIIIVTHDPEVAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 3e-14
Identities = 69/244 (28%), Positives = 117/244 (47%), Gaps = 32/244 (13%)
Query: 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML-GELPPVS 98
I + N FS+ + +E L N++ +I G VAI+G G GK S IS +L G L P S
Sbjct: 6 VMIKVENVSFSYPN-SENNALKNVSFEINEGEYVAILGHNGSGK-STISKILTGLLKPQS 63
Query: 99 -----DASAVIRGTVAYV-PQVSWIFN--------ATVRDNILFG---SAFEPARYEKAI 141
D + + + + ++ IF ATV D+I FG P + + I
Sbjct: 64 GEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDII 123
Query: 142 DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 201
D + + ++ + + N+SGGQKQRV++A + N ++ IFD+ S LD
Sbjct: 124 DDLAKKVGMEDY-------LDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPK 176
Query: 202 VGRQVFDRCIRGEL---SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGE 258
R++ I +L KT + +T+ + D++I+ EG + +G +++ NN E
Sbjct: 177 GKREIKK--IMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNKE 234
Query: 259 LFQK 262
+ +K
Sbjct: 235 ILEK 238
|
Length = 271 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 3e-14
Identities = 56/229 (24%), Positives = 103/229 (44%), Gaps = 31/229 (13%)
Query: 670 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG- 728
+ + LP + F + + GI G +GAGKS++L + + + + G I+++G
Sbjct: 1 MLCVDIEKRLPDFTLKIDFDLN-EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGT 59
Query: 729 --FDIAKFGLMDL----RKILGIIPQSPVLFSG-TVR----FNLDPFSEHSDADLWEA-L 776
FD K ++L RKI G++ Q LF VR F L D + L
Sbjct: 60 VLFDSRK--KINLPPQQRKI-GLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELL 116
Query: 777 ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 836
+ L + R L S G++Q ++L+RAL + ++L+LDE +A+D
Sbjct: 117 DLLGLDHLLNRYPAQL-----------SGGEKQRVALARALAAQPELLLLDEPFSALDRA 165
Query: 837 TDALIQKTIREEFKS--CTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 882
+ +++ K+ ++ + H L+ DRI++++ GR+
Sbjct: 166 LRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 75.4 bits (185), Expect = 3e-14
Identities = 57/213 (26%), Positives = 98/213 (46%), Gaps = 20/213 (9%)
Query: 57 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-------------VSDASAV 103
L +++L+I G L+A++G +G GKT+L+ A+ G + ++ A
Sbjct: 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH 77
Query: 104 IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGE 163
RG + + V DN+ FG + KA + L L+ GD
Sbjct: 78 KRGLALLFQNYALFPHLKVEDNVAFG--LRAQKMPKADIAERVADALKLVGLGDAAA--H 133
Query: 164 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR--GELSGKTRV 221
+SGG +QR+++ARA+ DV + D+PLSALDA++ + + EL T +
Sbjct: 134 LPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTIL 193
Query: 222 LVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDL 253
VT +Q L+ D+ ++ +G + G + L
Sbjct: 194 CVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 3e-14
Identities = 51/236 (21%), Positives = 95/236 (40%), Gaps = 37/236 (15%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
I+ ++V +R + +L LS+ + P + IVG GAGK+++L+ L G +
Sbjct: 32 IELKNVSVRRNGK--KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVT 89
Query: 726 IDGFDIAKFGLM-DLRKILGIIPQSPVL-----------------FSGTVRFNLDPFSEH 767
+ G K + +LRK +G++ S L F ++ + +
Sbjct: 90 LLGRRFGKGETIFELRKRIGLV--SSELHERFRVRETVRDVVLSGFFASIGIYQEDLTA- 146
Query: 768 SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLD 827
E L A LG + S G+++ + ++RAL++ ++L+LD
Sbjct: 147 ------EDLAAAQWLL----ELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILD 196
Query: 828 EATAAVDVRTDALIQKTIRE---EFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVL 879
E +D+ + + E + +L + H I C LLL G V+
Sbjct: 197 EPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVV 252
|
Length = 257 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.8 bits (181), Expect = 3e-14
Identities = 39/96 (40%), Positives = 60/96 (62%), Gaps = 1/96 (1%)
Query: 162 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRV 221
G+ V++SGGQ+QRVS+ARA+ +V +FD+P SALD + +V + GKT V
Sbjct: 147 GKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMV 206
Query: 222 LVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 256
+VT+++ F V +I +H+G ++EEG E L N
Sbjct: 207 VVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGN 242
|
Length = 257 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 3e-14
Identities = 55/215 (25%), Positives = 110/215 (51%), Gaps = 9/215 (4%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 741
L+ ++F P + ++ ++G GAGKS++ I++ G +LI G I K + ++RK
Sbjct: 19 ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRK 78
Query: 742 ILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEA 799
+G++ Q+P +FS TV ++ F + L E + A+ LGL+
Sbjct: 79 FVGLVFQNPDDQIFSPTVEQDI-AFGP-INLGLDEETVAHRVSSALH--MLGLEELRDRV 134
Query: 800 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLII-- 857
+ S G+++ ++++ + ++LVLDE TA +D + + + + ++ M +I
Sbjct: 135 PHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFS 194
Query: 858 AHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 891
H+L+ + + D I ++D GR++ Y T EE+
Sbjct: 195 THQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQP 229
|
Length = 277 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 3e-14
Identities = 67/226 (29%), Positives = 111/226 (49%), Gaps = 32/226 (14%)
Query: 683 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 742
++ S + + I+G +G+GKS+++ L R++E RG IL+DG DIAK +LR++
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 743 -----------LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLG 791
++P VL V F L E E ERA +A+ +G
Sbjct: 104 RRKKISMVFQSFALLPHRTVL--ENVAFGL----EVQGVPKAEREERAL--EALEL--VG 153
Query: 792 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS 851
L+ + S G +Q + L+RAL IL++DEA +A+ D LI+ +++E
Sbjct: 154 LEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSAL----DPLIRTEMQDELLE 209
Query: 852 C------TMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 890
T++ I H L+ + DRI ++ G +++ TPEE+L N
Sbjct: 210 LQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLN 255
|
Length = 386 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.0 bits (181), Expect = 3e-14
Identities = 63/229 (27%), Positives = 121/229 (52%), Gaps = 9/229 (3%)
Query: 666 IKFEDVVLRYRPELP-PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 724
++ E++V +Y E L+G+SF+I + V I+G+ G+GKS+ + + E G++
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 725 LIDGFDIAKFGLMDLRKILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWEALERAHLK 782
IDG + + +LR+ +G++ Q+P TV ++ E+ E ++R +
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKR--VD 122
Query: 783 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 842
+A+ ++ LD + E S GQ+Q ++++ + R +I++LDE+T+ +D I
Sbjct: 123 EALLAVNM-LDFKTREPAR-LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIM 180
Query: 843 KTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 889
+ I E E T+L I H L+ DRIL++ +G +++ P EL +
Sbjct: 181 RVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFA 229
|
Length = 277 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 4e-14
Identities = 69/218 (31%), Positives = 107/218 (49%), Gaps = 36/218 (16%)
Query: 59 TLLN-INLDIPVGSLVAIVGGTGEGKTSLISAM-LGELP----------------PVSDA 100
T+L+ I+L++ G +VAI+G +G GKT+L+ + L E P +S
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76
Query: 101 SAVIRGTVAYVPQVSWIFN----ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLP-- 154
+IR +V V FN TV +NI+ G P + + +LL
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEG----PVIVKGEPKEEATARARELLAKV 132
Query: 155 --GGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 212
G T R +SGGQ+QRV++ARA+ +V +FD+P SALD + +V + IR
Sbjct: 133 GLAGKETSYPRR---LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLN-TIR 188
Query: 213 GELSGK-TRVLVTNQLHFLSQV-DRIILVHEGMVKEEG 248
K T V+VT+++ F V DR I + +G + E+G
Sbjct: 189 QLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQG 226
|
Length = 250 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 5e-14
Identities = 71/252 (28%), Positives = 117/252 (46%), Gaps = 42/252 (16%)
Query: 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LER-- 721
SI+ +V R+ L +S IP + V ++G +G+GK+ TL R++ LER
Sbjct: 2 SIEVRNVSKRF--GDFVALDDVSLDIPSGELVALLGPSGSGKT----TLLRLIAGLERPD 55
Query: 722 -GRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNL------DPFSEHSDADLW 773
G IL G D + + R + G + Q LF TV N+ P SE
Sbjct: 56 SGTILFGGEDATDVPVQE-RNV-GFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEA-- 111
Query: 774 EALERAH-LKDAIRRNSLG--LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 830
E + H L ++ + L AQ+S GQRQ ++L+RAL K+L+LDE
Sbjct: 112 EIRAKVHELLKLVQLDWLADRYPAQLSG-------GQRQRVALARALAVEPKVLLLDEPF 164
Query: 831 AAVDVRTDALIQKTIREEFK------SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 883
A+ DA ++K +R + T + + H ++ DR+++++ GR+ + T
Sbjct: 165 GAL----DAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGT 220
Query: 884 PEELLSNEGSSF 895
P+E+ + S F
Sbjct: 221 PDEVYDHPASPF 232
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 5e-14
Identities = 53/212 (25%), Positives = 93/212 (43%), Gaps = 53/212 (25%)
Query: 50 SWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------ 103
S SK+ + L N++ G L AI+G +G GK++L++A+ G + + V
Sbjct: 15 SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRP 74
Query: 104 -----IRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGD 157
R + YVPQ + TVR+ ++F +
Sbjct: 75 LDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL------------------------- 109
Query: 158 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LS 216
RG +SGG+++RVS+A + SN + D+P S LD+ QV +R +
Sbjct: 110 ------RG--LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVM-SLLRRLADT 160
Query: 217 GKTRVLVTNQLHFLSQV----DRIILVHEGMV 244
G+T + +Q S++ D+++L+ +G V
Sbjct: 161 GRTIICSIHQP--SSEIFELFDKLLLLSQGRV 190
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 5e-14
Identities = 75/250 (30%), Positives = 117/250 (46%), Gaps = 44/250 (17%)
Query: 662 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 721
S I F +V RY +L V+ GLSF + + G++G GAGK++ L L + +
Sbjct: 4 SVAPIDFRNVEKRYGDKL--VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDA 61
Query: 722 GRILIDGFDI---AKFGLMDLRKILGIIPQSPVL---FSGTVRFNLDPFSEH---SDADL 772
G I + G + A+ R+ +G++PQ L F TVR NL F + S A
Sbjct: 62 GSISLCGEPVPSRARHA----RQRVGVVPQFDNLDPDF--TVRENLLVFGRYFGLSAAAA 115
Query: 773 WEA----LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 828
LE A L++ DA+V E S G ++ L+L+RAL+ +LVLDE
Sbjct: 116 RALVPPLLEFAKLENKA-------DAKVGE----LSGGMKRRLTLARALVNDPDVLVLDE 164
Query: 829 ATAAVDVRTDALIQKTIREEFKSC-TMLIIAH------RLNTIIDCDRILLLDSGRVLEY 881
T +D + L+ + +R T+L+ H RL CDR+ +++ GR +
Sbjct: 165 PTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERL-----CDRLCVIEEGRKIAE 219
Query: 882 DTPEELLSNE 891
P L+ +E
Sbjct: 220 GAPHALIESE 229
|
Length = 306 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 5e-14
Identities = 66/236 (27%), Positives = 111/236 (47%), Gaps = 49/236 (20%)
Query: 56 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------ 103
ER L ++N+ IP GS VAI+G TG GK++L+ + G L P S +
Sbjct: 19 ERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNK 78
Query: 104 ----IRGTVAYVPQV--SWIFNATVRDNILFG---------SAFEPARYEKAIDVTSLQH 148
+R V V Q +F TV +I FG A + AR + I++ L
Sbjct: 79 KLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAR--EMIELVGLPE 136
Query: 149 D-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR--- 204
+ L P +SGGQ +RV++A + +V + D+P + LD GR
Sbjct: 137 ELLARSP-----------FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPK-GRKEM 184
Query: 205 -QVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNGE 258
++F + + + G T VLVT+ + ++ D+I+++H+G V +GT ++ + +
Sbjct: 185 MEMFYKLHKEK--GLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADPD 238
|
Length = 290 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 6e-14
Identities = 55/236 (23%), Positives = 102/236 (43%), Gaps = 55/236 (23%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----VSDASAV-------------- 103
++ ++ G ++ IVG +G GK+ L A++G LP + +
Sbjct: 23 GVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKEL 82
Query: 104 --IRGT-VAYVPQ-----------VSWIFNATVRDNILFGSAFEPARYEKAIDVTSL--- 146
IRG +A + Q + +R + + E+AI++ L
Sbjct: 83 RKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLR--LHGKGLSKKEAKERAIELLELVGI 140
Query: 147 ---QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 203
+ L P +SGG +QRV +A A+ N + I D+P +ALD V
Sbjct: 141 PDPERRLKSYP-----------HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQ 189
Query: 204 RQVFD--RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 256
Q+ D + ++ E G +L+T+ L ++++ DR+ +++ G + EEG E++ N
Sbjct: 190 AQILDLLKELQREK-GTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKN 244
|
Length = 316 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 6e-14
Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 36/244 (14%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
I E+V Y + VL +S IP I+G GAGKS++L+ + R+++ + G I
Sbjct: 2 ITIENVSKSYGTK--VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEIT 59
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVR----FNLDPFS---------EHSDAD 771
IDG ++ +L K L I+ Q + S TVR F P+S +
Sbjct: 60 IDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIIN-- 117
Query: 772 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 831
EA+E HL+D R LD S GQRQ ++ L + + ++LDE
Sbjct: 118 --EAIEYLHLEDLSDRY---LD--------ELSGGQRQRAFIAMVLAQDTDYVLLDEPLN 164
Query: 832 AVDVRTDALIQKTIR---EEFKSCTMLIIAHRLN-TIIDCDRILLLDSGRVLEYDTPEEL 887
+D++ I K +R +E T++++ H +N D I+ L +G+V++ +P+E+
Sbjct: 165 NLDMKHSVQIMKILRRLADELGK-TIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEI 223
Query: 888 LSNE 891
+ E
Sbjct: 224 IQPE 227
|
Length = 252 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 6e-14
Identities = 66/218 (30%), Positives = 111/218 (50%), Gaps = 33/218 (15%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELPP----------VSDASAVIRGTV 108
L +I+L + G V ++G +G GKT+L+ + G E ++ R
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRD-Y 78
Query: 109 AYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDL--LPGGDVTEIGERG 165
V Q +F N TV DNI +G + +A + LDL LPG + G+
Sbjct: 79 GIVFQSYALFPNLTVADNIAYG--LKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQ-- 134
Query: 166 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS------GKT 219
+SGGQ+QRV++ARA+ ++ + + D+PLSALDA V +R E+ G T
Sbjct: 135 --LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREH-----LRTEIRQLQRRLGVT 187
Query: 220 RVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 256
++VT +Q LS DRI++++ G++++ GT +++ +
Sbjct: 188 TIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 7e-14
Identities = 69/255 (27%), Positives = 117/255 (45%), Gaps = 52/255 (20%)
Query: 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 99
I + + F + A L +++ + G VAIVG G GK++L + G L P +
Sbjct: 4 EIIRVEHISFRYP-DAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG 62
Query: 100 ASAV------------IRGTVAYVPQVSWIFN-------ATVRDNILFGSAFEP------ 134
V +R V V Q N ATV+D++ FG E
Sbjct: 63 TITVGGMVLSEETVWDVRRQVGMVFQ-----NPDNQFVGATVQDDVAFG--LENIGVPRE 115
Query: 135 ---ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIF 191
R ++A+ ++ L+ P +SGGQKQRV++A + D+ I
Sbjct: 116 EMVERVDQALRQVGMEDFLNREPH-----------RLSGGQKQRVAIAGVLALQPDIIIL 164
Query: 192 DDPLSALDAHVGRQ-VFD--RCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEG 248
D+ S LD GR+ V + R ++ + G T + +T+ L +Q DR+I++++G + EEG
Sbjct: 165 DEATSMLDP-RGRREVLETVRQLKEQ-KGITVLSITHDLDEAAQADRVIVMNKGEILEEG 222
Query: 249 TFEDLSNNGELFQKL 263
T E++ +G + Q++
Sbjct: 223 TPEEIFKSGHMLQEI 237
|
Length = 279 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 9e-14
Identities = 64/241 (26%), Positives = 100/241 (41%), Gaps = 47/241 (19%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI-----VELERGRILIDGFDIAKFG 735
+ G+SF I + + +VG +G+GKS ++ + G IL DG D+
Sbjct: 24 EAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83
Query: 736 LMDLRKI----LGIIPQSPVLFSGTVRFNLDP-----------FSEH---SDADLW---- 773
LR + +G+I Q P+ +L+P H S A
Sbjct: 84 ERQLRGVRGNKIGMIFQEPMT-------SLNPLHTIGKQLAEVLRLHRGLSRAAARARAL 136
Query: 774 EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAV 833
E LE + + +R LDA E S GQRQ + ++ AL +L+ DE T A+
Sbjct: 137 ELLELVGIPEPEKR----LDAYPHE----LSGGQRQRVMIAMALANEPDLLIADEPTTAL 188
Query: 834 DVRTDALIQKTIRE---EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889
DV A I ++E E +L I H L + DR+ ++ G ++E T E L +
Sbjct: 189 DVTVQAQILDLLKELQAELG-MAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFA 247
Query: 890 N 890
Sbjct: 248 A 248
|
Length = 534 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 1e-13
Identities = 58/259 (22%), Positives = 118/259 (45%), Gaps = 15/259 (5%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG--------ELPPVSDASAVI---RGTV 108
L NI+ I G V ++G TG GK++L+SA L ++ VS S + R
Sbjct: 20 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAF 79
Query: 109 AYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI 168
+PQ +IF+ T R N+ + K + L+ ++ PG + + G +
Sbjct: 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVL 139
Query: 169 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLH 228
S G KQ + +AR+V S + + + D+P + LD + QV + ++ + T +L +++
Sbjct: 140 SHGHKQLMCLARSVLSKAKILLLDEPSAHLDP-ITYQVIRKTLKQAFADCTVILSEHRIE 198
Query: 229 FLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTS 288
+ + R +++ E V++ + + L N F++ + + +++ + +
Sbjct: 199 AMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPSDRLKLFPRRNSSKSK---RKP 255
Query: 289 KPAANGVDNDLPKEASDTR 307
+P + + +E DTR
Sbjct: 256 RPQIQALQEETEEEVQDTR 274
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 1e-13
Identities = 62/231 (26%), Positives = 111/231 (48%), Gaps = 29/231 (12%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG---FDIAKFGLM 737
L +S I + V ++G +GAGKS++L + + + GRI ++G FD++ +
Sbjct: 16 GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR 75
Query: 738 DLRKILGIIPQSPVLFSG-TVR----FNLDPFSEHSDADLWEALERAHLKDAIRRNSLGL 792
D RK+ G + Q LF TV F L E EA RA +++ +R
Sbjct: 76 D-RKV-GFVFQHYALFPHMTVADNIAFGLKVRKERPS----EAEIRARVEELLRL----- 124
Query: 793 DAQVSEAGENF----SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK---TI 845
Q+ + + S GQRQ ++L+RAL K+L+LDE A+D + +++ +
Sbjct: 125 -VQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKL 183
Query: 846 REEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 895
+ T + + H ++ DR+++L+ GR+ + P+E+ + S F
Sbjct: 184 HDRLG-VTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASRF 233
|
Length = 345 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 1e-13
Identities = 58/219 (26%), Positives = 105/219 (47%), Gaps = 18/219 (8%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
+ + V Y LP + + V I+G +GAGKS++LN + +E G I
Sbjct: 1 LALDKVRYEYE-HLP---MEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIK 56
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDA 784
++ GL ++ + ++ Q LF+ TVR N+ H L A ++ + DA
Sbjct: 57 VNDQSHT--GLAPYQRPVSMLFQENNLFAHLTVRQNIG-LGLHPGLKL-NAEQQEKVVDA 112
Query: 785 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD----VRTDAL 840
+ +G+ + E S GQRQ ++L+R L+R + IL+LDE +A+D AL
Sbjct: 113 AQ--QVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLAL 170
Query: 841 IQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRV 878
+++ E + T+L++ H L+ +I ++ G++
Sbjct: 171 VKQLCSE--RQRTLLMVTHHLSDARAIASQIAVVSQGKI 207
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 1e-13
Identities = 66/232 (28%), Positives = 107/232 (46%), Gaps = 37/232 (15%)
Query: 35 LTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL 94
+T+ L IR Y S + + E L I+LDI G +VAIVG +G GK++L++ +LG L
Sbjct: 1 MTALLELKDIRRSYPSGEEQVE--VLKGISLDIYAGEMVAIVGASGSGKSTLMN-ILGCL 57
Query: 95 PPVSDASAVIRGTVAYVPQVSWIFNATVRDNIL-------FGSAFE-------------- 133
+ + + G AT+ + L FG F+
Sbjct: 58 DKPTSGTYRVAGQDV----------ATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNV 107
Query: 134 --PARYEKAIDVTSLQHDLDLLPGGDVTE-IGERGVNISGGQKQRVSMARAVYSNSDVFI 190
PA Y L +LL + + + + +SGGQ+QRVS+ARA+ + V +
Sbjct: 108 EVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVIL 167
Query: 191 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEG 242
D+P ALD+H G +V + G T ++VT+ +Q +R+I + +G
Sbjct: 168 ADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDG 219
|
Length = 648 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 1e-13
Identities = 67/245 (27%), Positives = 116/245 (47%), Gaps = 46/245 (18%)
Query: 683 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER-----GRILIDGFDIAKFG-- 735
L G+S IP ++G +G GKS+ L L R+ + + G + +DG DI + G
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 736 LMDLRKILGIIPQSPVLFSGTVRFNLD--PFSEHSD------------------ADLWE- 774
L++LRK +G++ QSP F ++R N+ P +H D +L E
Sbjct: 121 LVELRKRVGMVFQSPNPFPKSIRENISYGP-RKHGDINTGLLARLLGRDDKDAEDELVER 179
Query: 775 ALERAHL----KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 830
+L +A L D + N+LGL S GQ+Q L ++R L +++++DE
Sbjct: 180 SLRQAALWDEVNDRLDDNALGL-----------SGGQQQRLCIARCLAVDPEVILMDEPA 228
Query: 831 AAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI--IDCDRILLLDSGRVLEYDTPEELL 888
+A+D + I+ I E + T++++ H + I + L G ++EYD +++
Sbjct: 229 SALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIF 288
Query: 889 SNEGS 893
N S
Sbjct: 289 ENPES 293
|
Length = 305 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 1e-13
Identities = 57/220 (25%), Positives = 95/220 (43%), Gaps = 15/220 (6%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 740
++ G+ T PP G++G G+GKS++L L + + G + + G D+
Sbjct: 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARA 74
Query: 741 KILGIIPQS-----PVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRR--NSLGLD 793
+ + ++ Q P+ V P LW A + H + R L
Sbjct: 75 RRVALVEQDSDTAVPLTVRDVVALGRIPHRS-----LW-AGDSPHDAAVVDRALARTELS 128
Query: 794 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCT 853
S G+RQ + ++RAL + K+L+LDE T +DVR +RE +
Sbjct: 129 HLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGV 188
Query: 854 MLIIA-HRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 891
++ A H LN CD +++LD GRV+ P E+L+
Sbjct: 189 TVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLTPA 228
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (174), Expect = 1e-13
Identities = 55/226 (24%), Positives = 111/226 (49%), Gaps = 30/226 (13%)
Query: 683 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR----IVELERGRILIDGFDIAKFGLMD 738
L ++ I + ++G +G GKS+ L R I +++ G + I+G D+ ++
Sbjct: 18 LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKID-GLVEIEGKDVKNQDVVA 76
Query: 739 LRKILGIIPQSPVLFSGTVRFNLD---------PFSEHSDADLWEALERAHL----KDAI 785
LRK +G++ Q P +F ++ N+ + +A + + L++ L KD +
Sbjct: 77 LRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKL 136
Query: 786 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 845
++N+L L S GQ+Q L ++RAL + K+L+LDE T+A+D + +I++ +
Sbjct: 137 KQNALAL-----------SGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELL 185
Query: 846 REEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890
+E + +M+++ H + D G ++E+ +E N
Sbjct: 186 KELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231
|
Length = 246 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 2e-13
Identities = 83/309 (26%), Positives = 139/309 (44%), Gaps = 46/309 (14%)
Query: 55 AERPTLLNINLDIPVGSLVAIVGGTGEGKTS-------LISAMLGEL----PPVSDASAV 103
+ + ++NL I G + ++G +G GKT+ LI GE+ +SD V
Sbjct: 12 GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPV 71
Query: 104 -IRGTVAYVPQVSWIF-NATVRDNI-----LFGSAFEPARYEKAIDVTSLQHDLDLLPGG 156
+R + YV Q +F + TV +NI L G ++ R +K D +L L G
Sbjct: 72 ELRRKIGYVIQQIGLFPHLTVAENIATVPKLLG--WDKERIKKRAD------ELLDLVGL 123
Query: 157 DVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR---QVFDRCIR 212
D +E +R + +SGGQ+QRV +ARA+ ++ + + D+P ALD + R Q + ++
Sbjct: 124 DPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDP-ITRKQLQEEIKELQ 182
Query: 213 GELSGKTRVLVTNQL-HFLSQVDRIILVHEGMVKEEGTFEDLSNN--GELFQKLMENAGK 269
EL GKT V VT+ + L DRI ++ G + + T +++ N + + G+
Sbjct: 183 KEL-GKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFVEDFF---GE 238
Query: 270 MEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRK----TKEGKSVL--IKQEERE 323
E + D A+G L + D G+SVL + ++ R
Sbjct: 239 SERGLRLLSLVSVADAVRRGEPADG--EPLLEGFVDRDALSDFLARGRSVLPVVDEDGRP 296
Query: 324 TGVVSFKVL 332
G V+ L
Sbjct: 297 LGTVTRADL 305
|
Length = 309 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 2e-13
Identities = 71/248 (28%), Positives = 121/248 (48%), Gaps = 35/248 (14%)
Query: 47 GYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG 106
Y S+ + L +I++ G++ IVG +G GK++LI ++ L ++ S +I G
Sbjct: 10 SYSSFG----KEILKDISVKFEGGAIYTIVGPSGAGKSTLIK-LINRLIDPTEGSILIDG 64
Query: 107 T-------------VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLL 153
+ V Q +F TV+DNI +G + EK +DV ++ L ++
Sbjct: 65 VDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPML---KGEKNVDV---EYYLSIV 118
Query: 154 PGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 212
G E R V N+SGG+ QRVS+AR + +N +V + D+P SALD ++ + I
Sbjct: 119 --GLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDP-TSTEIIEELIV 175
Query: 213 GELSGKTRVLVTNQLHFLSQVDRI----ILVHEGMVKEEG-TFEDLSNNGELFQKLMENA 267
+L K + V H + Q RI +++G++ E T++ +N KL
Sbjct: 176 -KLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKLFIQ- 233
Query: 268 GKMEEYVE 275
GK++E V+
Sbjct: 234 GKLKEEVK 241
|
Length = 241 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 2e-13
Identities = 67/244 (27%), Positives = 106/244 (43%), Gaps = 25/244 (10%)
Query: 660 WPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 718
+P + VL R + +SFT+ + +GI G GAG++ + LF
Sbjct: 251 FPEPPEEGIGEPVLEVRNLSGGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP 310
Query: 719 LERGRILIDGFDIA--------KFGLM---DLRKILGIIPQSPVLFSGTVRFNLDPFSEH 767
G IL+DG + K G+ + RK G++ + + T+ +L FS
Sbjct: 311 ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLA-SLRRFSRR 369
Query: 768 SDADLWEALERAHLKDAIRRNSL---GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 824
+ ERA + IRR + + + S G +Q + L+R L K+L
Sbjct: 370 GL--IDRRKERALAERYIRRLRIKTPSPEQPIG----TLSGGNQQKVVLARWLATDPKVL 423
Query: 825 VLDEATAAVDVRTDALIQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGR-VLEY 881
+LDE T +DV A I + IRE +L+I+ L ++ DRIL++ GR V E
Sbjct: 424 ILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGEL 483
Query: 882 DTPE 885
D E
Sbjct: 484 DREE 487
|
Length = 500 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.9 bits (176), Expect = 2e-13
Identities = 65/221 (29%), Positives = 94/221 (42%), Gaps = 39/221 (17%)
Query: 58 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDASAV--I 104
P L NINL I G + I+G G GK++L + G L P D S + I
Sbjct: 16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGI 75
Query: 105 RGTVAYV---PQVSWIFNATVRDNILFGS---AFEPARYEKAIDVTSLQHDLDLLPGGDV 158
R V V P+ ++ TV +++ FG P K +D +
Sbjct: 76 RKLVGIVFQNPETQFV-GRTVEEDLAFGPENLCLPPIEIRKRVDRA-------------L 121
Query: 159 TEIG------ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 212
EIG +SGGQ Q V++A + + IFD+ S LD G V +R +
Sbjct: 122 AEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKK 181
Query: 213 GELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 253
GKT V +T+ L L DRII++ G + EG E++
Sbjct: 182 LHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENV 222
|
Length = 274 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 2e-13
Identities = 54/228 (23%), Positives = 98/228 (42%), Gaps = 31/228 (13%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
I+F +V Y P LH +S I + + + G +GAGK+++L L+ + RG++
Sbjct: 2 IEFHNVSKAY-PGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60
Query: 726 IDGFDIAKF---GLMDLRKILGIIPQ-----------SPVLFSGTVRFNLDPFSEHSDAD 771
I G D+ + L LR+ +G++ Q V VR + +
Sbjct: 61 IAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGA 120
Query: 772 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 831
+ H DA E S G++Q ++++RA++ +L+ DE T
Sbjct: 121 ALRQVGLEHKADAF--------------PEQLSGGEQQRVAIARAIVNSPPLLLADEPTG 166
Query: 832 AVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID--CDRILLLDSGR 877
+D I ++ K T +I+A +++D R+++LD GR
Sbjct: 167 NLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 2e-13
Identities = 66/244 (27%), Positives = 122/244 (50%), Gaps = 26/244 (10%)
Query: 666 IKFEDVVLRY----RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 721
IK +V RY R + V +S + + GIVG +GAGK+++ + ++E
Sbjct: 280 IKVRNVSKRYISVDRGVVKAV-DNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTS 338
Query: 722 G----RILIDGFDIAKFGLMD---LRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWE 774
G R+ + D+ K G ++ +GI+ Q L+ R LD +E +L +
Sbjct: 339 GEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLY--PHRTVLDNLTEAIGLELPD 396
Query: 775 ALERAHLKDAIRRNSLGLDAQVSEA-----GENFSVGQRQLLSLSRALLRRSKILVLDEA 829
E A +K I +G D + +E + S G+R ++L++ L++ +I++LDE
Sbjct: 397 --ELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEP 454
Query: 830 TAAVDVRTDALIQKTI---REEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPE 885
T +D T + +I REE + T +I++H ++ ++D CDR L+ G++++ PE
Sbjct: 455 TGTMDPITKVDVTHSILKAREEMEQ-TFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPE 513
Query: 886 ELLS 889
E++
Sbjct: 514 EIVE 517
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 2e-13
Identities = 59/233 (25%), Positives = 112/233 (48%), Gaps = 41/233 (17%)
Query: 683 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI---VELER--GRILIDGFDIAK--FG 735
+ G+ + ++G +G+GKS+ L +L R+ +++ R G+IL G DI +
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95
Query: 736 LMDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALER 778
+ ++RK +G++ Q P F+ ++ N LD E S A LW+
Sbjct: 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWD---- 151
Query: 779 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 838
+KD + +++L L S GQ+Q L ++RA+ + IL++DE +A+D +
Sbjct: 152 -QVKDDLHKSALTL-----------SGGQQQRLCIARAIAVKPDILLMDEPASALDPIST 199
Query: 839 ALIQKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 890
+++T+ E K+ T++I+ H + D G ++EYD + +N
Sbjct: 200 MQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFTN 252
|
Length = 267 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 2e-13
Identities = 60/211 (28%), Positives = 108/211 (51%), Gaps = 23/211 (10%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG-TVAYVP----QVSW 116
++LDI G ++G +G GKT+L+ ++ + ++ G + +P V+
Sbjct: 18 GVSLDIKEGEFFTLLGPSGCGKTTLLR-LIAGFETPTSGEILLDGKDITNLPPHKRPVNT 76
Query: 117 IF-------NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN-I 168
+F + TV +NI FG + KA + LDL+ + R + +
Sbjct: 77 VFQNYALFPHLTVFENIAFG--LRLKKLPKAEIKERVAEALDLV---QLEGYANRKPSQL 131
Query: 169 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR--QVFDRCIRGELSGKTRVLVT-N 225
SGGQ+QRV++ARA+ + V + D+PL ALD + + Q+ + ++ EL G T V VT +
Sbjct: 132 SGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKEL-GITFVFVTHD 190
Query: 226 QLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 256
Q L+ DRI ++++G +++ GT E++
Sbjct: 191 QEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 2e-13
Identities = 63/244 (25%), Positives = 117/244 (47%), Gaps = 33/244 (13%)
Query: 666 IKFEDVVLRY----RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSM---LNTLFRIVE 718
IK ++V +Y L ++ + + + I+GR G+GKS++ +N L E
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 719 LERGRILIDGFDIAKFG-LMDLRKILGIIPQSP------VLFSGTVRF---NLDPFSEHS 768
G++ +DG D + L D+R G++ Q+P + V F NL E
Sbjct: 65 ---GKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEI 121
Query: 769 DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 828
+ E+L++ + + RR++ L S GQ+Q ++++ L R + ++ DE
Sbjct: 122 RERVDESLKKVGMYE-YRRHAPHL----------LSGGQKQRVAIAGILAMRPECIIFDE 170
Query: 829 ATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEE 886
TA +D + TI+E K T+++I H + ++ DRI+++DSG+V+ TP+E
Sbjct: 171 PTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKE 230
Query: 887 LLSN 890
+
Sbjct: 231 IFKE 234
|
Length = 280 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 2e-13
Identities = 35/94 (37%), Positives = 60/94 (63%), Gaps = 5/94 (5%)
Query: 166 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS--GKTRVLV 223
++SGGQ+QRV++ARA+ +V +FD+P SALD + +V + +L+ G+T V+V
Sbjct: 151 AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLK--VMQDLAEEGRTMVVV 208
Query: 224 TNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 256
T+++ F V +I +H+G ++EEG E + N
Sbjct: 209 THEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGN 242
|
Length = 256 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 2e-13
Identities = 60/218 (27%), Positives = 105/218 (48%), Gaps = 12/218 (5%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 741
+LH LS T P G++G G+GKS++L L R G IL+D + + +
Sbjct: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR 85
Query: 742 ILGIIPQS-PVLFSGTVR--FNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSE 798
+ +PQ P TVR + + H + A +R +++AI + +GL
Sbjct: 86 KVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAI--SLVGLKPLAHR 143
Query: 799 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD----VRTDALIQKTIREEFKSCTM 854
++ S G+RQ ++ + + S+ L+LDE T+A+D V AL+ + +E + T+
Sbjct: 144 LVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQE--RGLTV 201
Query: 855 LIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 891
+ + H +N CD ++ L G ++ TP EL+ E
Sbjct: 202 IAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRGE 239
|
Length = 265 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 3e-13
Identities = 55/220 (25%), Positives = 104/220 (47%), Gaps = 16/220 (7%)
Query: 662 SSGSIKFEDVVLRYRPELPP--VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL 719
S S K + EL P +L +S ++P ++G TG+GKS++L +L E+
Sbjct: 653 SERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEI 712
Query: 720 ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERA 779
GR+ + + + +PQ + + TVR N+ F E A L +A+ +
Sbjct: 713 SEGRVWAE-------------RSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVS 759
Query: 780 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 839
L+ + + GL+ ++ E G N S GQ+ +SL+RA+ + +LD+ +A+D
Sbjct: 760 QLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGE 819
Query: 840 LI-QKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRV 878
+ ++ T ++ H+++ + D ++ L GRV
Sbjct: 820 RVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRV 859
|
Length = 1560 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 3e-13
Identities = 47/212 (22%), Positives = 92/212 (43%), Gaps = 35/212 (16%)
Query: 57 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIRGTVAYV 111
R L +++ IP G V + G +G GK++L+ + GE P + + R +
Sbjct: 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREI 74
Query: 112 P----QVSWIF-------NATVRDNILFG---SAFEPARYEK----AIDVTSLQHDLDLL 153
P Q+ +F + TV +N+ P + +D+ L+H L
Sbjct: 75 PFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARAL 134
Query: 154 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG 213
P +SGG++QRV++ARA+ + V + D+P LD + ++
Sbjct: 135 P-----------SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI 183
Query: 214 ELSGKTRVLVTNQLHFLSQVD-RIILVHEGMV 244
G T ++ T+ L ++++ R++ + +G +
Sbjct: 184 NRLGTTVLMATHDLELVNRMRHRVLALEDGRL 215
|
Length = 223 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 3e-13
Identities = 66/235 (28%), Positives = 107/235 (45%), Gaps = 34/235 (14%)
Query: 662 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 721
I DV + +R L SFT+P +VG G+GKS++ L V L
Sbjct: 3 QQAGIVVNDVTVTWR-NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLAS 61
Query: 722 GRILIDGFDIAKFGLMDLRK-ILGIIPQS-------PVLFSGTV---RFN----LDPFSE 766
G+I I G + L+K ++ +PQS PVL V R+ L +
Sbjct: 62 GKISILGQPTRQ----ALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKK 117
Query: 767 HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVL 826
+ AL R + + R Q+ E S GQ++ + L+RA+ ++ ++++L
Sbjct: 118 RDRQIVTAALARVDMVEFRHR-------QIGE----LSGGQKKRVFLARAIAQQGQVILL 166
Query: 827 DEATAAVDVRTDALIQKTIRE-EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVL 879
DE VDV+T+A I +RE + TML+ H L ++ + CD +++ G VL
Sbjct: 167 DEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVL 220
|
Length = 272 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 3e-13
Identities = 78/303 (25%), Positives = 127/303 (41%), Gaps = 73/303 (24%)
Query: 42 ISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 99
I ++N ++ K E L N++++I G +AI+G TG GKT+ I + L P D
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP--D 60
Query: 100 ASAV--------------------------------------IRGTVAYVPQVS--WIFN 119
+ IR V V Q + +F
Sbjct: 61 TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFE 120
Query: 120 ATVRDNILFGS---------AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISG 170
T+ +I+FG A + A K I++ L D L +SG
Sbjct: 121 QTIEKDIIFGPVSMGVSKEEAKKRAA--KYIELVGL--DESYLQ--------RSPFELSG 168
Query: 171 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL--SGKTRVLVTNQL- 227
GQK+RV++A + D +FD+P + LD +++ + I L GKT +LVT+ L
Sbjct: 169 GQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILE--IFDNLNKQGKTIILVTHDLD 226
Query: 228 HFLSQVDRIILVHEG-MVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEE-KEDGETVDN 285
+ L R I +G ++K+ T++ LS+N L + ME K+ +V + ++ G V
Sbjct: 227 NVLEWTKRTIFFKDGKIIKDGDTYDILSDNKFLIENNMEPP-KLLNFVNKLEKKGIDVPK 285
Query: 286 KTS 288
TS
Sbjct: 286 VTS 288
|
Length = 305 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 4e-13
Identities = 54/227 (23%), Positives = 108/227 (47%), Gaps = 13/227 (5%)
Query: 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 724
SI+ + Y + L +SF VG +G GAGKS+ + + + + G +
Sbjct: 2 SIRVSSLTKLYGTQ--NALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSV 59
Query: 725 LIDGFDIAKFGLMDLRKILGIIPQ-SPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKD 783
+ G D+ + ++++ +G +P+ +P+ VR L F A ++ ++ LK
Sbjct: 60 QVCGEDVLQ-NPKEVQRNIGYLPEHNPLYLDMYVREYLQ-FI----AGIY-GMKGQLLKQ 112
Query: 784 AIRR--NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 841
+ +GL + + S G RQ + L++AL+ K+L+LDE T +D I
Sbjct: 113 RVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEI 172
Query: 842 QKTIREEFKSCTMLIIAHRLNTI-IDCDRILLLDSGRVLEYDTPEEL 887
+ I+ K T+++ H + + CDR+++++ G+++ +EL
Sbjct: 173 RNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDEL 219
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 5e-13
Identities = 49/211 (23%), Positives = 90/211 (42%), Gaps = 35/211 (16%)
Query: 57 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIRGTVAYV 111
L +++L I G + + G +G GKT+L+ + G L P V R +
Sbjct: 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQL 74
Query: 112 P----QVSWIF-------NATVRDNILF-------GSAFEPARYEKAIDVTSLQHDLDLL 153
P ++ +F + TV +N+ R A+ L+H D
Sbjct: 75 PLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAF 134
Query: 154 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG 213
P +SGG++QRV++ARA+ ++ + + D+P LD + ++ D R
Sbjct: 135 PE-----------QLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRL 183
Query: 214 ELSGKTRVLVTNQLHFLSQVD-RIILVHEGM 243
G T ++ T+ L + +V R+I++ +G
Sbjct: 184 NKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 5e-13
Identities = 59/211 (27%), Positives = 100/211 (47%), Gaps = 26/211 (12%)
Query: 698 IVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF---- 753
++G +G GK+++L L + + G I++DG D+ LR I ++ QS LF
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVP-PHLRHI-NMVFQSYALFPHMT 58
Query: 754 -SGTVRFNLD----PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 808
V F L P +E + EAL L++ R L S GQ+
Sbjct: 59 VEENVAFGLKMRKVPRAE-IKPRVLEALRLVQLEEFADRKPHQL-----------SGGQQ 106
Query: 809 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ---KTIREEFKSCTMLIIAHRLNTII 865
Q ++L+RAL+ + KIL+LDE +A+D + +Q KTI+E+ + + + +
Sbjct: 107 QRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMT 166
Query: 866 DCDRILLLDSGRVLEYDTPEELLSNEGSSFS 896
DRI ++ G++ + TPEE+ + F
Sbjct: 167 MSDRIAIMRKGKIAQIGTPEEIYEEPANLFV 197
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 6e-13
Identities = 64/257 (24%), Positives = 104/257 (40%), Gaps = 54/257 (21%)
Query: 35 LTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA---ML 91
T +PAI +R+ + K L +INLDIP + A++G +G GK++L+ M
Sbjct: 1 ETMKIPAIEVRDLNLYYGDKH---ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMN 57
Query: 92 GELPPVSDASAV----------------IRGTVAYVPQVSWIFNATVRDNILFG------ 129
+P V +R V V Q F ++ DN+ +G
Sbjct: 58 DLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGI 117
Query: 130 -SAFEPARYEKAIDVTSL----QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYS 184
E ++ +L + L + + +SGGQ+QR+ +ARA+
Sbjct: 118 KDKELDEIVESSLKKAALWDEVKDRLH-----------KSALGLSGGQQQRLCIARALAV 166
Query: 185 NSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK-TRVLVTNQLHFLSQV----DRIILV 239
+V + D+P SALD + + I EL K T V+VT H + Q D
Sbjct: 167 KPEVLLMDEPTSALDP-ISTLKIEELIT-ELKKKYTIVIVT---HNMQQAARVSDYTAFF 221
Query: 240 HEGMVKEEGTFEDLSNN 256
+ G + E G + + N
Sbjct: 222 YLGELVEFGPTDKIFTN 238
|
Length = 253 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 6e-13
Identities = 56/206 (27%), Positives = 96/206 (46%), Gaps = 33/206 (16%)
Query: 64 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----IRGTVAYVPQVSWIFN 119
+L++ G +VAI+G +G GK++L++ + G + P S + V G Y VS +F
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77
Query: 120 A-------TVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERG 165
TVR NI G +A + + A + LD LP
Sbjct: 78 ENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE---------- 127
Query: 166 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK--TRVLV 223
+SGGQ+QRV++AR + + + + D+P SALD + R+ ++ S + T ++V
Sbjct: 128 -QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLL-REEMLALVKQLCSERQRTLLMV 185
Query: 224 TNQLHFLSQV-DRIILVHEGMVKEEG 248
T+ L + +I +V +G +K
Sbjct: 186 THHLSDARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 6e-13
Identities = 66/244 (27%), Positives = 117/244 (47%), Gaps = 26/244 (10%)
Query: 666 IKFEDVVLRYRPEL-------PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 718
++ DV YR PVL +S +I + VG++GR+G GKS++ L + +
Sbjct: 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK 62
Query: 719 LERGRILIDGFDIAKF---GLMDLRKILGIIPQ---SPVLFSGTVRFNL-DPFSEHSDAD 771
+G + G D+ + R+ + ++ Q S V TVR + +P + D
Sbjct: 63 PAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLD 122
Query: 772 LWEALER-AHLKDAIRRNSLGLDAQVSEA-GENFSVGQRQLLSLSRALLRRSKILVLDEA 829
E R A L D + GL ++ ++ S GQ Q ++++RAL + K++VLDEA
Sbjct: 123 ESEQKARIAELLDMV-----GLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEA 177
Query: 830 TAAVDVRTDALI---QKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPE 885
+ +D+ A+I + +++ F L I H L + C R+ ++D G+++E
Sbjct: 178 VSNLDMVLQAVILELLRKLQQAF-GTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVA 236
Query: 886 ELLS 889
+LLS
Sbjct: 237 QLLS 240
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 6e-13
Identities = 66/242 (27%), Positives = 109/242 (45%), Gaps = 64/242 (26%)
Query: 42 ISIRNGYFSWD----SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG----- 92
+++RN ++ SK +INLDI G V VG +G GK++L+ + G
Sbjct: 4 VTLRNVTKAYGDVVISK-------DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT 56
Query: 93 ------------ELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPA----- 135
++PP ++ + A P +S V +N+ FG A
Sbjct: 57 SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLS------VAENMSFGLKLAGAKKEEI 110
Query: 136 --RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 193
R + +V L H LD P +SGGQ+QRV++ R + + VF+ D+
Sbjct: 111 NQRVNQVAEVLQLAHLLDRKPKA-----------LSGGQRQRVAIGRTLVAEPSVFLLDE 159
Query: 194 PLSALDAHVGRQVFDRCIRGELS------GKTRVLVT-NQLHFLSQVDRIILVHEGMVKE 246
PLS LDA + Q +R E+S G+T + VT +Q+ ++ D+I+++ G V +
Sbjct: 160 PLSNLDAALRVQ-----MRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ 214
Query: 247 EG 248
G
Sbjct: 215 VG 216
|
Length = 369 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 6e-13
Identities = 60/228 (26%), Positives = 108/228 (47%), Gaps = 31/228 (13%)
Query: 683 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKFG 735
L ++ I + +G +G GKS++L T R+ EL G IL+DG +I K
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88
Query: 736 LMDLRKILGIIPQSPVLFSGT----VRFNLDPFSEHSDADLWE----ALERAHL----KD 783
+ LR +G++ Q P F + + F + F + S A++ E AL +A L KD
Sbjct: 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKD 148
Query: 784 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 843
+ ++ L S GQ+Q L ++R + R ++L+LDE +A+D + I++
Sbjct: 149 KLHQSGYSL-----------SGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEE 197
Query: 844 TIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 890
I E + T++I+ H + C D + G ++E+ + + +
Sbjct: 198 LITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFTK 245
|
Length = 260 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 7e-13
Identities = 45/198 (22%), Positives = 80/198 (40%), Gaps = 15/198 (7%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 740
+ LSFT+ + + I G GAGK+++L L ++ + G + G I +
Sbjct: 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQ 75
Query: 741 KILGIIPQSPVLFSGTVRFNLDPFSE----HSDADLWEALERAHLKDAIRRNSLGLDAQV 796
+L + Q + T NL + + A +WEAL + L D V
Sbjct: 76 ALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGL-------EDLPV 128
Query: 797 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLI 856
S GQ++ ++L+R L + + +LDE A+D AL+ + +++
Sbjct: 129 G----QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVL 184
Query: 857 IAHRLNTIIDCDRILLLD 874
+ I +I LD
Sbjct: 185 LTTHQPLPIASAQIRRLD 202
|
Length = 209 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 8e-13
Identities = 66/228 (28%), Positives = 96/228 (42%), Gaps = 38/228 (16%)
Query: 53 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL-----------PPVSDAS 101
S A R L ++LD+ G ++AI+G G GK++L+ A+ GEL P++
Sbjct: 10 SLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWP 69
Query: 102 AVIRGTV-AYVPQVSWI-FNATVRDNILFG-----SAFEPARYEKAIDVTSLQHDLDLLP 154
A +PQ S + F TV++ + G S EP E+ DL L
Sbjct: 70 PEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLA 129
Query: 155 GGDVTEIGERGVNISGGQKQRVSMAR------AVYSNSDVFIFDDPLSALDAHVGRQVFD 208
G D +SGG++QRV +AR + D+P SALD
Sbjct: 130 GRDYRT-------LSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTL- 181
Query: 209 RCIRGELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFED 252
R R VL LH L+ DRI+L+H+G V G+ +D
Sbjct: 182 RLARQLAREGGAVLAV--LHDLNLAAQYADRIVLLHQGRVIASGSPQD 227
|
Length = 259 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 8e-13
Identities = 61/237 (25%), Positives = 106/237 (44%), Gaps = 48/237 (20%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI-----LID--------- 727
VLHG+ + P + V I+G +G+GK+++L + + + E G I ID
Sbjct: 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQK 77
Query: 728 ----------GFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALE 777
GF F L R +L I + PV+ G + + A
Sbjct: 78 GLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPK------------EEATARA 125
Query: 778 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 837
R L +GL + + S GQ+Q ++++RAL R ++++ DE T+A+D
Sbjct: 126 RELLA------KVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPEL 179
Query: 838 DALIQKTIR---EEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890
+ TIR +E + TM+I+ H ++ D DR + +D GR++E + L ++
Sbjct: 180 VGEVLNTIRQLAQEKR--TMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFAD 234
|
Length = 250 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 8e-13
Identities = 53/208 (25%), Positives = 87/208 (41%), Gaps = 39/208 (18%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------RGTVA 109
+++L + G ++AI+G +G GKT+L+ A+ G + S I + VA
Sbjct: 25 DVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVA 84
Query: 110 YVPQVS-WIFNATVRDNILFGSAF-----EPARYEKAIDVTSLQHDLDLLPGGDVTEIGE 163
YV Q + TVR+ + + + K L DL L G G
Sbjct: 85 YVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIG-----GN 139
Query: 164 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH----VGRQVFDRCIRGELSGKT 219
ISGG+++RVS+A + + V I D+P S LD+ + + R +
Sbjct: 140 LVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRI---- 195
Query: 220 RVLVTNQLH-----FLSQVDRIILVHEG 242
V++T +H DRI+L+ G
Sbjct: 196 -VILT--IHQPRSDLFRLFDRILLLSSG 220
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 9e-13
Identities = 68/223 (30%), Positives = 116/223 (52%), Gaps = 35/223 (15%)
Query: 58 PTLLNINLDIPVGSLVAIVGGTGEGKTSL---ISAML----GEL----PPVSDASAV--- 103
L NI+L+I G +V I+G +G GK++L I+ + G+L V+D
Sbjct: 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERL 74
Query: 104 IRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 162
IR V Q ++F + T +N++FG P R A + + +LL ++G
Sbjct: 75 IRQEAGMVFQQFYLFPHLTALENVMFG----PLRVRGASKEEAEKQARELL-----AKVG 125
Query: 163 --ERG----VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS 216
ER +SGGQ+QRV++ARA+ + +FD+P SALD + +V + ++ +L+
Sbjct: 126 LAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVL-KVMQ-DLA 183
Query: 217 --GKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 256
G T V+VT+++ F +V R+I + +G + E+G + L N
Sbjct: 184 EEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226
|
Length = 240 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.2 bits (169), Expect = 9e-13
Identities = 59/233 (25%), Positives = 113/233 (48%), Gaps = 41/233 (17%)
Query: 683 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKFG 735
++ +S I ++G +G GKS+ L ++ R+ +L G IL +G +I +
Sbjct: 37 VNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96
Query: 736 LMDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALER 778
+++LR+ +G++ Q P F ++ N LD E S A LW+
Sbjct: 97 VVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWD---- 152
Query: 779 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 838
+KD + ++L L S GQ+Q L ++R L + +L+LDE +A+D ++
Sbjct: 153 -EVKDRLHSSALSL-----------SGGQQQRLCIARTLAMKPAVLLLDEPASALDPISN 200
Query: 839 ALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890
A I++ I E + +++I+ H + + DR +G ++EYD E++ ++
Sbjct: 201 AKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTS 253
|
Length = 268 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 9e-13
Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 41/218 (18%)
Query: 698 IVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI-AKF-GLMDLRKILGIIPQSP 750
I+G +G GKS+ L + R+ +L G ++ DG DI KF + LRK +G++ Q P
Sbjct: 70 IIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKP 129
Query: 751 VLFSGTVRFN---------------LDPFSEHS--DADLWEALERAHLKDAIRRNSLGLD 793
F ++ N L+ E S A LW+ + D + +N+LGL
Sbjct: 130 NPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWD-----EVSDRLDKNALGL- 183
Query: 794 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCT 853
S GQ+Q L ++R L +IL+LDE T+A+D + A I+ I+E S T
Sbjct: 184 ----------SGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYT 233
Query: 854 MLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 890
++I+ H + D + G ++E+ +L +N
Sbjct: 234 IMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTN 271
|
Length = 286 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 1e-12
Identities = 58/215 (26%), Positives = 98/215 (45%), Gaps = 41/215 (19%)
Query: 64 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG-----TVAYVPQVSWIF 118
+L +P G +VAI+G +G GK++L++ + G P S +I G + VS +F
Sbjct: 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPAS-GEILINGVDHTASPPAERPVSMLF 77
Query: 119 -------NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGER 164
+ TV NI G +A + + E A L L LPG
Sbjct: 78 QENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG--------- 128
Query: 165 GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ-----VFDRCIRGELSGKT 219
+SGGQ+QRV++AR + + + D+P SALD + R V C T
Sbjct: 129 --ELSGGQRQRVALARCLVREQPILLLDEPFSALDPAL-RAEMLALVSQLCDE---RKMT 182
Query: 220 RVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDL 253
++VT+ +++ DR++ + G + +G+ ++L
Sbjct: 183 LLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQEL 217
|
Length = 231 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 1e-12
Identities = 51/210 (24%), Positives = 95/210 (45%), Gaps = 30/210 (14%)
Query: 56 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS------------DASAV 103
++ L +I+L + G + +G G GKT+ + +LG + P S + A+
Sbjct: 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEAL 71
Query: 104 IR-GTVAYVPQVSWIFNATVRDNILFGSA---FEPARYEKAIDVTSLQHDLDLLPGGDVT 159
R G + P + N T R+N+ + R ++ +DV L+ G
Sbjct: 72 RRIGALIEAP--GFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKG--- 126
Query: 160 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKT 219
S G KQR+ +A A+ N D+ I D+P + LD +++ + + G T
Sbjct: 127 --------FSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGIT 178
Query: 220 RVLVTNQLHFLSQV-DRIILVHEGMVKEEG 248
++ ++ L + +V DRI ++++G + EEG
Sbjct: 179 VLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 1e-12
Identities = 50/210 (23%), Positives = 92/210 (43%), Gaps = 33/210 (15%)
Query: 51 WDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAY 110
++ L ++NL I G + AI+G +G GK++L++ ++G L + G
Sbjct: 5 SKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLN-IIGLLEKFDSGQVYLNGQETP 63
Query: 111 VP-----------QVSWIF-------NATVRDNILFGSAFEP---ARYEKAIDVTSLQHD 149
++ ++F N TV +N+ G ++ + +
Sbjct: 64 PLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVG 123
Query: 150 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 209
L+L + E+ SGG++QRV++ARA+ + + D+P +LD +V D
Sbjct: 124 LNLKLKQKIYEL-------SGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLD- 175
Query: 210 CIRGEL--SGKTRVLVTNQLHFLSQVDRII 237
+ EL GKT ++VT+ Q DR+I
Sbjct: 176 -LLLELNDEGKTIIIVTHDPEVAKQADRVI 204
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 1e-12
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 53/214 (24%)
Query: 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 101
++ RNG+ + L + + +P GS+ A+VG G GK++L A++G + S
Sbjct: 14 VTWRNGHTA---------LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKI 64
Query: 102 AVI---------RGTVAYVPQ---VSWIFNATVRDNILFG-----------SAFEPARYE 138
+++ + VAYVPQ V W F V D ++ G +
Sbjct: 65 SILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVT 124
Query: 139 KA---IDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL 195
A +D+ +H +IGE +SGGQK+RV +ARA+ V + D+P
Sbjct: 125 AALARVDMVEFRH----------RQIGE----LSGGQKKRVFLARAIAQQGQVILLDEPF 170
Query: 196 SALDAHVGRQVFD--RCIRGELSGKTRVLVTNQL 227
+ +D ++ R +R E GKT ++ T+ L
Sbjct: 171 TGVDVKTEARIISLLRELRDE--GKTMLVSTHNL 202
|
Length = 272 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 55/228 (24%), Positives = 106/228 (46%), Gaps = 40/228 (17%)
Query: 57 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------- 103
+ L +++L I G VA++G +G GK++L+ + G + P S + +
Sbjct: 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKAL 73
Query: 104 --IRGTVAYVPQ-VSWIFNATVRDNILFGSA------------FEPARYEKAIDVTSLQH 148
+R + + Q + I +V +N+L G F ++A+
Sbjct: 74 RQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRAL------A 127
Query: 149 DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 208
L+ + G + + +R +SGGQ+QRV++ARA+ + + D+P+++LD RQV D
Sbjct: 128 ALERV--GLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMD 185
Query: 209 --RCIRGELSGKTRVLVTNQLHF-LSQVDRIILVHEGMVKEEGTFEDL 253
+ I E G T ++ +Q+ DRI+ + +G + +G +L
Sbjct: 186 LLKRINREE-GITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAEL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 2e-12
Identities = 50/199 (25%), Positives = 92/199 (46%), Gaps = 33/199 (16%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNAT 121
++ I G + +VG +G GK++L +LG P S G + +F
Sbjct: 31 GVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTS-------GEI--------LFEG- 74
Query: 122 VRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN-ISGGQKQRVSMAR 180
+D R + ++ L E R + +SGGQ+QR+ +AR
Sbjct: 75 -KDITKLSKEERRERVLELLEKVGLP-----------EEFLYRYPHELSGGQRQRIGIAR 122
Query: 181 AVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQV-DRII 237
A+ N + + D+P+SALD V Q+ + + ++ EL G T + +++ L + + DRI
Sbjct: 123 ALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEEL-GLTYLFISHDLSVVRYISDRIA 181
Query: 238 LVHEGMVKEEGTFEDLSNN 256
+++ G + E G E++ +N
Sbjct: 182 VMYLGKIVEIGPTEEVFSN 200
|
Length = 268 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 2e-12
Identities = 65/268 (24%), Positives = 116/268 (43%), Gaps = 36/268 (13%)
Query: 624 ASLAENSLNAVERVGNYIEL--PSEAPLVIESNRPPPGWPSSGS-IKFEDVVLRYRPELP 680
A A++ + +E++ + P E + PPPG ++FE+V Y
Sbjct: 277 AKKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGY-DGGR 335
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 740
+L LSF I D++ IVG GAGKS++L L + G + K G
Sbjct: 336 LLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV--------KVGE---T 384
Query: 741 KILGIIPQSPVLFSGTVRFNLDPFSEHSDA--DLWEALERAHLKDAIRRNSLGLDA-QVS 797
+G Q + + E S+ D E RA+L G
Sbjct: 385 VKIGYFDQH----RDELDPDKTVLEELSEGFPDGDEQEVRAYLGR------FGFTGEDQE 434
Query: 798 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLII 857
+ S G++ L L++ LL+ +L+LDE T +D+ + +++ + +F+ T+L++
Sbjct: 435 KPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEAL-LDFEG-TVLLV 492
Query: 858 AH-R--LNTIIDCDRILLLDSGRVLEYD 882
+H R L+ + RI L++ +V E++
Sbjct: 493 SHDRYFLDRV--ATRIWLVE-DKVEEFE 517
|
Length = 530 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 2e-12
Identities = 58/225 (25%), Positives = 104/225 (46%), Gaps = 45/225 (20%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS----------------DASAVIR 105
+++LD+ G + I+G +G GK++L+ + + P S + + R
Sbjct: 42 DVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRR 101
Query: 106 GTVAYVPQVSWIF-NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGD 157
++ V Q + + TV +N+ FG A R +A+++ L+ P
Sbjct: 102 KKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPD-- 159
Query: 158 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR--GEL 215
+SGG +QRV +ARA+ + D+ + D+ SALD + R++ D +R EL
Sbjct: 160 ---------ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAEL 210
Query: 216 SGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLSNN 256
KT V +T H L + DRI ++ +G + + GT E++ N
Sbjct: 211 -QKTIVFIT---HDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 2e-12
Identities = 54/224 (24%), Positives = 103/224 (45%), Gaps = 25/224 (11%)
Query: 56 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------ 103
E + ++N + G AIVG TG GK++LI + L P + V
Sbjct: 19 EHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDK 78
Query: 104 ----IRGTVAYVPQV--SWIFNATVRDNILFGSAFEPARYEKAID-VTSLQHDLDLLPGG 156
+R + V Q S +F TV I+FG P ++ +D V + H L + G
Sbjct: 79 YIRPVRKRIGMVFQFPESQLFEDTVEREIIFG----PKNFKMNLDEVKNYAHRLLMDLGF 134
Query: 157 DVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL- 215
+ + +SGGQ +++++ + N D+ + D+P + LD RQV +
Sbjct: 135 SRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTD 194
Query: 216 SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNGE 258
KT +LV++ ++ +++ D +I++ EG + + + ++L + +
Sbjct: 195 ENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKK 238
|
Length = 286 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (167), Expect = 2e-12
Identities = 65/231 (28%), Positives = 114/231 (49%), Gaps = 22/231 (9%)
Query: 670 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG- 728
D+ RY+ E PVL GL+ S G+VG G GKS++ L ++ ++G +L G
Sbjct: 6 DLWFRYQDE--PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGK 63
Query: 729 -FDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDA--I 785
D +K GL+ LR+ + + Q P F D+D+ +L + +A
Sbjct: 64 PLDYSKRGLLALRQQVATVFQDP---------EQQIFYTDIDSDIAFSLRNLGVPEAEIT 114
Query: 786 RR--NSLGL-DAQ--VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 840
RR +L L DAQ + + S GQ++ ++++ AL+ +++ L+LDE TA +D
Sbjct: 115 RRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQ 174
Query: 841 IQKTIREEFKSCTMLII-AHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889
+ IR +II +H ++ I + D + +L G++L + P E+ +
Sbjct: 175 MIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225
|
Length = 271 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 67.0 bits (163), Expect = 3e-12
Identities = 52/206 (25%), Positives = 97/206 (47%), Gaps = 13/206 (6%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL- 739
L ++ IP IVG+ G GKSS+L + ++ G++ + ++
Sbjct: 15 ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATR 74
Query: 740 ---RKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLKDAIRRNSLGLD 793
R + Q P L + TV N+ PF++ + +A L+ I G
Sbjct: 75 SRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDA---CSLQPDIDLLPFGDQ 131
Query: 794 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR-TDALIQKTIREEFK-- 850
++ E G N S GQRQ + ++RAL + + I+ LD+ +A+D+ +D L+Q+ I + +
Sbjct: 132 TEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDD 191
Query: 851 SCTMLIIAHRLNTIIDCDRILLLDSG 876
T++++ H+L + D I+ + G
Sbjct: 192 KRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 3e-12
Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 26/129 (20%)
Query: 84 TSLISAMLGELPPVS-------------DASAVIRGTVAYVPQVSWIF-NATVRDNILFG 129
++L+ + G L P S + ++R + V Q +F TVR+N+ FG
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 130 SAFEP--ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 187
+ AR E+A++ L LD P G +SGGQKQRV++ARA+
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREPVG----------TLSGGQKQRVAIARALLKKPK 110
Query: 188 VFIFDDPLS 196
+ + D+P +
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 65.1 bits (160), Expect = 3e-12
Identities = 41/193 (21%), Positives = 74/193 (38%), Gaps = 60/193 (31%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNAT 121
++L + G + A++G G GK++L+ + G P S G +
Sbjct: 18 GVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDS-------GEI------------- 57
Query: 122 VRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI----SGGQKQRVS 177
++ G A A G+ + S G++Q V
Sbjct: 58 ----LVDGKEVSFASPRDARR---------------------AGIAMVYQLSVGERQMVE 92
Query: 178 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL--SGKTRVLVTNQLHFLSQV-- 233
+ARA+ N+ + I D+P +AL ++F IR L G + ++ H L +V
Sbjct: 93 IARALARNARLLILDEPTAALTPAEVERLFKV-IR-RLRAQGVAVIFIS---HRLDEVFE 147
Query: 234 --DRIILVHEGMV 244
DR+ ++ +G V
Sbjct: 148 IADRVTVLRDGRV 160
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 3e-12
Identities = 61/218 (27%), Positives = 103/218 (47%), Gaps = 20/218 (9%)
Query: 53 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDAS 101
+ L ++L + GSLV +VG G GKT+L+ A+ G L P V S
Sbjct: 12 EFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALS 71
Query: 102 AVIRG-TVAYVPQ-VSWIFNATVRDNILFGSAFEPARYEKA--IDVTSLQHDLDLLPGGD 157
A VA VPQ S F VR + G +R++ D +++ ++
Sbjct: 72 ARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAME---RTG 128
Query: 158 VTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS 216
V + +R V ++SGG++QRV +ARA+ + V + D+P ++LD + + + R
Sbjct: 129 VAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDD 188
Query: 217 GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 253
GKT V + L ++ D ++L+ +G V+ G D+
Sbjct: 189 GKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADV 226
|
Length = 402 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 3e-12
Identities = 58/242 (23%), Positives = 112/242 (46%), Gaps = 28/242 (11%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
I+ E+V Y + L G+S I + ++G +G GK+++L + G IL
Sbjct: 1 IELENVSKFYGGFV--ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEIL 58
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLF-----SGTVRFNLDPFSEHSDADLWEALERAH 780
+DG DI L ++ + + Q+ LF + F L L +A +
Sbjct: 59 LDGKDIT--NLPPHKRPVNTVFQNYALFPHLTVFENIAFGL------RLKKLPKAEIKER 110
Query: 781 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 840
+ +A+ + L+ + S GQ+Q ++++RAL+ K+L+LDE A+D++
Sbjct: 111 VAEALDL--VQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK---- 164
Query: 841 IQKTIREEFKS------CTMLIIAH-RLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGS 893
++K ++ E K T + + H + + DRI +++ G++ + TPEE+ +
Sbjct: 165 LRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEPAN 224
Query: 894 SF 895
F
Sbjct: 225 RF 226
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 3e-12
Identities = 49/182 (26%), Positives = 75/182 (41%), Gaps = 39/182 (21%)
Query: 56 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS 115
R ++ + G + + G G GKT+L+ + G LPP + GT+
Sbjct: 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAA-------GTIKLDGGDI 66
Query: 116 WIF------------NA-----TVRDNILFGSAF---EPARYEKAIDVTSLQHDLDLLPG 155
NA TV +N+ F +AF E A++ L L P
Sbjct: 67 DDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHL-PF 125
Query: 156 GDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL 215
G +S GQK+RV++AR + SN ++I D+P +ALDA +F IR L
Sbjct: 126 G----------YLSAGQKRRVALARLLVSNRPIWILDEPTAALDAA-AVALFAELIRAHL 174
Query: 216 SG 217
+
Sbjct: 175 AQ 176
|
Length = 207 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 3e-12
Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 16/181 (8%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 740
+ GLSFT+ + + + G G+GK+++L + ++ G I +DG DI + +
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEAC 75
Query: 741 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEAL---ERAHLKDAIRRNSLGLDAQVS 797
LG ++ + + TV NL+ W A E + A+ ++GL
Sbjct: 76 HYLG--HRNAMKPALTVAENLE---------FWAAFLGGEELDIAAAL--EAVGLAPLAH 122
Query: 798 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLII 857
S GQ++ ++L+R L+ I +LDE TAA+D AL + IR ++I
Sbjct: 123 LPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIA 182
Query: 858 A 858
A
Sbjct: 183 A 183
|
Length = 207 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 3e-12
Identities = 70/242 (28%), Positives = 122/242 (50%), Gaps = 34/242 (14%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
+K D+ Y LP + T+ ++V I+G +GAGKS++LN + + G +
Sbjct: 2 LKLTDITWLYH-HLP--MR-FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLT 57
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFN----LDPFSEHSDADLWEALERAH 780
++G D R+ + ++ Q LFS TV N L+P + + A +R
Sbjct: 58 LNGQDHTT--TPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAA------QREK 109
Query: 781 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD--VRTD 838
L R+ +G++ ++ S GQRQ ++L+R L+R IL+LDE +A+D +R +
Sbjct: 110 LHAIARQ--MGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQE 167
Query: 839 --ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRI----LLLDSGRVLEYDTP-EELLSNE 891
L+ + +E + T+L+++H L D RI L++ GR+ +D P +ELLS +
Sbjct: 168 MLTLVSQVCQE--RQLTLLMVSHSLE---DAARIAPRSLVVADGRIA-WDGPTDELLSGK 221
Query: 892 GS 893
S
Sbjct: 222 AS 223
|
Length = 232 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 3e-12
Identities = 52/216 (24%), Positives = 87/216 (40%), Gaps = 44/216 (20%)
Query: 673 LRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL--FRIVELERGRILIDGFD 730
L +L G++ TI + ++G G+GKS++ T+ E+ G IL G D
Sbjct: 6 LHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGED 65
Query: 731 IAKFGLMDLRKILGII--PQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRN 788
I + R LGI Q P G V+ D +R
Sbjct: 66 ITDL-PPEERARLGIFLAFQYPPEIPG-VK----------------------NADFLR-- 99
Query: 789 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREE 848
E FS G+++ + + LL + +LDE + +D+ L+ + I +
Sbjct: 100 ---------YVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVI-NK 149
Query: 849 FKS--CTMLIIAH--RLNTIIDCDRILLLDSGRVLE 880
+ ++LII H RL I DR+ +L GR+++
Sbjct: 150 LREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVK 185
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 3e-12
Identities = 60/219 (27%), Positives = 105/219 (47%), Gaps = 18/219 (8%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
++ + + Y E P +H T + IVG +G+GKS++LN + + GR+L
Sbjct: 1 VRLDKIRFSYG-EQP--MH-FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVL 56
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDA 784
I+G D+ D + + ++ Q LF+ TV N+ S A +R ++ A
Sbjct: 57 INGVDVTAAPPAD--RPVSMLFQENNLFAHLTVEQNVG--LGLSPGLKLTAEDRQAIEVA 112
Query: 785 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD--VRTD--AL 840
+ R +GL S G+RQ ++L+R L+R +L+LDE AA+D +R + L
Sbjct: 113 LAR--VGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDL 170
Query: 841 IQKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRV 878
+ E T+L++ H+ R++ LD+GR+
Sbjct: 171 VLDLHAE--TKMTVLMVTHQPEDAKRLAQRVVFLDNGRI 207
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 3e-12
Identities = 48/157 (30%), Positives = 83/157 (52%), Gaps = 29/157 (18%)
Query: 61 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDASAVI----- 104
L +NL +P + AI G +G GKTSLI+A+ G P + DA I
Sbjct: 15 LTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPE 74
Query: 105 RGTVAYVPQVSWIF-NATVRDNILFG-SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 162
+ + YV Q + +F + VR N+ +G + A+++K + + ++ LD PG
Sbjct: 75 KRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPG------- 127
Query: 163 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 199
++SGG+KQRV++ RA+ + ++ + D+PL++LD
Sbjct: 128 ----SLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 3e-12
Identities = 66/253 (26%), Positives = 117/253 (46%), Gaps = 42/253 (16%)
Query: 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 724
+IK +D+ Y + G+S I + I+G +G GKS+ + TL RI ELE G +
Sbjct: 7 AIKVKDLSFYYNTS--KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELE-GPV 63
Query: 725 LIDGFDIAKFG---------LMDLRKILGIIPQSPVLFSGT----VRFNLDPFSEHSDAD 771
++G + FG + LR+ +G++ Q P F + V + + ++ AD
Sbjct: 64 KVEG-VVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQAD 122
Query: 772 LWEALERA--------HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 823
L E +E A +KD + +++LGL S GQ+Q L ++RAL + K+
Sbjct: 123 LDEIVESALKGAALWQEVKDKLNKSALGL-----------SGGQQQRLCIARALAIKPKV 171
Query: 824 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNT---IIDCDRILLLDSGRV-- 878
L++DE +A+D +++ I T+ I+ H + + D D R+
Sbjct: 172 LLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQ 231
Query: 879 -LEYDTPEELLSN 890
+E+ ++ SN
Sbjct: 232 MVEFGVTTQIFSN 244
|
Length = 259 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 3e-12
Identities = 64/216 (29%), Positives = 98/216 (45%), Gaps = 29/216 (13%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 740
L G+SFTI + VG +G GAGK++ L L +++ G + + G K LR
Sbjct: 35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLR 94
Query: 741 KILGIIPQS-------PVLFSGTVR---FNLDPFSEHSDAD-LWEALERAHLKDAIRRNS 789
+I + Q PV+ S + ++L P D L E L+ L
Sbjct: 95 RIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEEL-------- 146
Query: 790 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF 849
LD V S+GQR ++ ALL +IL LDE T +DV I+ ++E
Sbjct: 147 --LDTPV----RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYN 200
Query: 850 K--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 882
+ T+L+ +H + I R+L++D GR+L YD
Sbjct: 201 RERGTTVLLTSHYMKDIEALARRVLVIDKGRLL-YD 235
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 70.8 bits (173), Expect = 3e-12
Identities = 56/213 (26%), Positives = 105/213 (49%), Gaps = 32/213 (15%)
Query: 57 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IR 105
RP + +N+ + A +G G GKT+ +S + G LPP S V +R
Sbjct: 943 RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVR 1002
Query: 106 GTVAYVPQVSWIFN-ATVRDNILF-----GSAFEPAR--YEKAIDVTSLQHDLDLLPGGD 157
++ PQ + +F+ TV ++ILF G ++E A+ E ++ T L H +
Sbjct: 1003 QSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRN------ 1056
Query: 158 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 217
E ++SGG ++++S+A A ++ V + D+P S +D + R ++D ++ SG
Sbjct: 1057 -----EEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SG 1110
Query: 218 KTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGT 249
+T ++ T+ + + DRI ++ +G + GT
Sbjct: 1111 RTIIMSTHHMDEADLLGDRIAIISQGRLYCSGT 1143
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 67.1 bits (165), Expect = 4e-12
Identities = 50/229 (21%), Positives = 95/229 (41%), Gaps = 47/229 (20%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-------------DASAVIRGTV 108
+++ + G + ++G G GKT+L + + G L P S + R +
Sbjct: 18 DVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77
Query: 109 AYVPQVSWIF-NATVRDNILFG--------------SAFEPARYEKA---IDVTSLQHDL 150
Q+ +F TV +N++ E E+A ++ L
Sbjct: 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLA 137
Query: 151 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 210
D G +S GQ++R+ +ARA+ ++ + + D+P + L +
Sbjct: 138 DRPAG-----------ELSYGQQRRLEIARALATDPKLLLLDEPAAGL-NPEETEELAEL 185
Query: 211 IRGEL--SGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 256
IR EL G T +LV + + + + DR+ ++ +G V EGT +++ NN
Sbjct: 186 IR-ELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNN 233
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 4e-12
Identities = 63/217 (29%), Positives = 111/217 (51%), Gaps = 15/217 (6%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LR 740
LH +S I + V ++G GAGK+++L TL GRI+ DG DI + +R
Sbjct: 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMR 79
Query: 741 KILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLW-EALERAHLKDAIRRNSLGLDAQVSE 798
+ + I+P+ +FS TV NL ++ D + E ++ + + R + ++
Sbjct: 80 EAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVY--ELFPRL---HERRIQR 134
Query: 799 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI---REEFKSCTML 855
AG S G++Q+L++ RAL+ + ++L+LDE + + I TI RE+ T+
Sbjct: 135 AG-TMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ--GMTIF 191
Query: 856 IIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 891
++ N + DR +L++G V+ DT + LL+NE
Sbjct: 192 LVEQNANQALKLADRGYVLENGHVVLEDTGDALLANE 228
|
Length = 237 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 4e-12
Identities = 56/201 (27%), Positives = 93/201 (46%), Gaps = 32/201 (15%)
Query: 57 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-----------R 105
R L +++L I G LV ++G +G GKT+L++ + G + P S S + R
Sbjct: 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP-SRGSIQLNGRRIEGPGAER 76
Query: 106 GTV----AYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 161
G V A +P W+ V DN+ FG EKA L L+
Sbjct: 77 GVVFQNEALLP---WL---NVIDNVAFGLQL--RGIEKAQRREIAHQMLALVGLEGAEH- 127
Query: 162 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-GELSGKTR 220
+ +SGG +QRV +ARA+ + + D+P ALDA Q+ + + + +GK
Sbjct: 128 -KYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQV 186
Query: 221 VLVTNQLH---FLSQVDRIIL 238
+L+T+ + FL+ R+++
Sbjct: 187 LLITHDIEEALFLA--TRLVV 205
|
Length = 259 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 4e-12
Identities = 59/228 (25%), Positives = 111/228 (48%), Gaps = 31/228 (13%)
Query: 683 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDI--AKFG 735
L+ +S P++ ++G +G+GKS++L ++ R+ +L G I+ +G +I +
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80
Query: 736 LMDLRKILGIIPQSPVLFSGT----VRFNLDPFSEHSDADLWEALERA--------HLKD 783
+DLRK +G++ Q P F + V + L L EA+E++ +KD
Sbjct: 81 TVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKD 140
Query: 784 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 843
+ ++LGL S GQ+Q + ++R L KI++LDE T+A+D + I++
Sbjct: 141 RLHDSALGL-----------SGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEE 189
Query: 844 TIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890
T+ TML++ + DR G ++EY+ +++ N
Sbjct: 190 TLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMN 237
|
Length = 252 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (164), Expect = 4e-12
Identities = 65/244 (26%), Positives = 116/244 (47%), Gaps = 32/244 (13%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER---- 721
IK E++ L Y + L +S IP + ++G +G GKS+ + L R+ +L +
Sbjct: 13 IKVENLNLWYGEK--QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRI 70
Query: 722 -GRILIDGFDIAKFGL--MDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALER 778
G++ I+G DI + + ++LRK +G++ Q P F P S + + +
Sbjct: 71 EGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPF---------PMSIYDNVAYGPRIHG 121
Query: 779 AHLKD--AIRRNSLGLDAQVSEAGE-------NFSVGQRQLLSLSRALLRRSKILVLDEA 829
A+ KD + N+L A E + + S GQ+Q L ++R L + KI++ DE
Sbjct: 122 ANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEP 181
Query: 830 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNT---IIDCDRILLLDSGRVLEYDTPEE 886
T+A+D + A I+ I K T++I+ H + I D L+ G ++E+ +
Sbjct: 182 TSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLM--GELIEFGQTRQ 239
Query: 887 LLSN 890
+ N
Sbjct: 240 IFHN 243
|
Length = 258 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (163), Expect = 6e-12
Identities = 65/233 (27%), Positives = 108/233 (46%), Gaps = 40/233 (17%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAKF-G 735
VL +S P ++G TG+GK++ L TL R+ + G +L+ G I +
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 736 LMDLRKILGIIPQSPVLF---------SGTVRFNLDPFSEH--------SDADLWEALER 778
+++ R+ +G++ Q P F +G L P E ++ LW+A+
Sbjct: 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV-- 153
Query: 779 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 838
KD ++S++ S GQ+QLL L+R L ++L+LDE T+A+D T
Sbjct: 154 ---KD-----------RLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTT 199
Query: 839 ALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890
I++ IR T++I+ H L DR L GR++E E+L S+
Sbjct: 200 EKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252
|
Length = 276 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 7e-12
Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 31/160 (19%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-----------V 108
L N++L++ G I+G TG GK+ L+ + G + P S ++ G +
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDS-GKILLNGKDITNLPPEKRDI 73
Query: 109 AYVPQVSWIF-NATVRDNILFG----SAFEPARYEKAIDVTSL---QHDLDLLPGGDVTE 160
+YVPQ +F + TV NI +G + K +++ + H L+ P
Sbjct: 74 SYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPE----- 128
Query: 161 IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 200
+SGG++QRV++ARA+ N + + D+P SALD
Sbjct: 129 ------TLSGGEQQRVAIARALVVNPKILLLDEPFSALDV 162
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 7e-12
Identities = 50/160 (31%), Positives = 79/160 (49%), Gaps = 28/160 (17%)
Query: 57 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-----------PVSDASAVIR 105
+P L +INL + G L+ ++G +G GKT+L++ + G +P PV A R
Sbjct: 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAE-R 72
Query: 106 GTV----AYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 161
G V +P W V+DN+ FG + A EK + L + +
Sbjct: 73 GVVFQNEGLLP---W---RNVQDNVAFG--LQLAGVEKMQRLEIAHQMLKKV---GLEGA 121
Query: 162 GERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 200
+R + +SGGQ+QRV +ARA+ +N + + D+P ALDA
Sbjct: 122 EKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161
|
Length = 255 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 7e-12
Identities = 55/196 (28%), Positives = 99/196 (50%), Gaps = 26/196 (13%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDI--AKF 734
V+ G+ IP + ++G +G GKS++L T R++EL G + + G +I
Sbjct: 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78
Query: 735 GLMDLRKILGIIPQSPVLFSGT---------VRFN--LDPFSEHSDADLWEALERAHLKD 783
+++R+ +G++ Q P F V+ N + E + W AL++A L D
Sbjct: 79 DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEW-ALKKAALWD 137
Query: 784 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 843
++ ++++ N S GQRQ L ++RAL + KIL++DE TA +D A I++
Sbjct: 138 EVKD-------RLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEE 190
Query: 844 TIREEFKSCTMLIIAH 859
+ E K T++++ H
Sbjct: 191 LLFELKKEYTIVLVTH 206
|
Length = 253 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 8e-12
Identities = 56/220 (25%), Positives = 98/220 (44%), Gaps = 35/220 (15%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLI-----------------SAMLGELPPVSDASAVI 104
+ +L I G + I+G +G GK++ + + + PV + V
Sbjct: 11 DADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPV-ELREVR 69
Query: 105 RGTVAYVPQVSWIF-NATVRDNILFGSAF----EPARYEKAIDVTSLQHDLDLLPGGDVT 159
R + V Q +F + T+ N G E R EKA L+LL +
Sbjct: 70 RKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKA---------LELLKLVGLE 120
Query: 160 EIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-G 217
E R + +SGG +QRV +ARA+ + D+ + D+ SALD + + D + + +
Sbjct: 121 EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQ 180
Query: 218 KTRVLVTNQL-HFLSQVDRIILVHEGMVKEEGTFEDLSNN 256
KT V +T+ L + DRI+++ G + + GT +++ N
Sbjct: 181 KTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 8e-12
Identities = 54/216 (25%), Positives = 89/216 (41%), Gaps = 45/216 (20%)
Query: 58 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS---------------DASA 102
L IN+ I G V +VG +G GK++L+ + E P S A
Sbjct: 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIP 74
Query: 103 VIRGTVAYVPQVS-WIFNATVRDNILFGSAFE---------PARYEKAIDVTSLQHDLDL 152
+R + V Q + + V +N+ F A E R A+++ L H
Sbjct: 75 YLRRKIGVVFQDFRLLPDRNVYENVAF--ALEVTGVPPREIRKRVPAALELVGLSHKHRA 132
Query: 153 LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 212
LP +SGG++QRV++ARA+ ++ + I D+P LD ++ + +
Sbjct: 133 LPAE-----------LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKK 181
Query: 213 GELSGKTRVLVTNQLHFLSQVD----RIILVHEGMV 244
+G T V+ T H VD R+I + G +
Sbjct: 182 INKAGTTVVVAT---HAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 9e-12
Identities = 62/217 (28%), Positives = 107/217 (49%), Gaps = 30/217 (13%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER-GRILIDG--FDIAKF---- 734
L ++ P + + ++G +GAGKSS+L L ++E+ R G + I G FD +K
Sbjct: 17 ALFDITLDCPEGETLVLLGPSGAGKSSLLRVL-NLLEMPRSGTLNIAGNHFDFSKTPSDK 75
Query: 735 GLMDLRKILGIIPQSPVLFSG-TVRFNL--DPF------SEHSDADLWEALERAHLKDAI 785
+ DLR+ +G++ Q L+ TV+ NL P + + A + L+R LK
Sbjct: 76 AIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYA 135
Query: 786 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 845
R L L S GQ+Q ++++RAL+ ++L+ DE TAA+D A I I
Sbjct: 136 DRYPLHL-----------SGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSII 184
Query: 846 RE-EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 880
+E T +I+ H + R++ +++G ++E
Sbjct: 185 KELAETGITQVIVTHEVEVARKTASRVVYMENGHIVE 221
|
Length = 242 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 9e-12
Identities = 61/233 (26%), Positives = 109/233 (46%), Gaps = 41/233 (17%)
Query: 683 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKFG 735
L ++ I ++ I+G +G GKS+ + TL R+VEL G+IL +I +
Sbjct: 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99
Query: 736 LMDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALER 778
+ +LR +G++ Q P F ++ N LD E S A +W+
Sbjct: 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD---- 155
Query: 779 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 838
LKD + N+ GL S GQ+Q L ++R L ++++DE T+A+D +
Sbjct: 156 -ELKDRLHDNAYGL-----------SGGQQQRLCIARCLAIEPDVILMDEPTSALDPIST 203
Query: 839 ALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890
+++ ++E K +++I+ H + D+ +G V EYD +++ SN
Sbjct: 204 LKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSN 256
|
Length = 271 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 9e-12
Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 41/233 (17%)
Query: 683 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKFG 735
LH +S + ++G +G GKS+ L L R+ +L G IL+DG +I
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 736 LMDLRKILGIIPQSPVLFSGTV--------RFN-------LDPFSEHS--DADLWEALER 778
+++LR+ +G++ Q P F ++ R N L E S A LW+
Sbjct: 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWD---- 137
Query: 779 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 838
+KD + ++LGL S GQ+Q L ++RAL ++L++DE +A+D
Sbjct: 138 -EVKDRLHESALGL-----------SGGQQQRLCIARALAVEPEVLLMDEPASALDPIAT 185
Query: 839 ALIQKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 890
I++ I E T++I+ H + D G+++E E++ +
Sbjct: 186 QKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTR 238
|
Length = 253 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 1e-11
Identities = 49/210 (23%), Positives = 95/210 (45%), Gaps = 35/210 (16%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTV 108
L ++L + G + ++G G GKT+L+ + PP S + +R +
Sbjct: 16 LDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRI 74
Query: 109 AYVPQ-VSWIFNATVR---DNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGER 164
Y+PQ N TVR D I + + +D L+L+ ++ + ++
Sbjct: 75 GYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEV-----LELV---NLGDRAKK 126
Query: 165 GVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVL 222
+ +SGG ++RV +A+A+ + + I D+P + LD R F R + EL + +L
Sbjct: 127 KIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP-EERIRF-RNLLSELGEDRIVIL 184
Query: 223 VTNQLHFLSQV----DRIILVHEGMVKEEG 248
T H + V +++ ++++G + EG
Sbjct: 185 ST---HIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 1e-11
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 20/184 (10%)
Query: 33 PPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG 92
P+ P I ++N + + L +++ + G AIVG G GKT+L+S + G
Sbjct: 23 HPIEINEPLIELKNVSVR---RNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTG 79
Query: 93 ELPPVSDASAV-------------IRGTVAYV-PQVSWIF--NATVRDNILFGSAFEPAR 136
E PP S + +R + V ++ F TVRD +L G
Sbjct: 80 EHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGI 139
Query: 137 YEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPL 195
Y++ + L LL + +R ++S G+++RV +ARA+ + ++ I D+P
Sbjct: 140 YQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPA 199
Query: 196 SALD 199
LD
Sbjct: 200 QGLD 203
|
Length = 257 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 68.9 bits (168), Expect = 1e-11
Identities = 69/271 (25%), Positives = 122/271 (45%), Gaps = 9/271 (3%)
Query: 628 ENSLNAVERVGNYIELPSEAPLVIES--NRPPPGWPSSGSIKFEDVVLRYRPELPPVLHG 685
E +L E + +E P + +S R PG +K ++V + P P +
Sbjct: 891 ERALEKTEPLTEEMEDPEHPEGINDSFFERELPGLVPGVCVK--NLVKIFEPSGRPAVDR 948
Query: 686 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745
L+ T + +G GAGK++ L+ L ++ G +L+ G DI + L +R+ LG+
Sbjct: 949 LNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI-ETNLDAVRQSLGM 1007
Query: 746 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSV 805
PQ +LF F WE A L+ GL + +E ++ S
Sbjct: 1008 CPQHNILFHHLTVAEHILFYAQLKGRSWE---EAQLEMEAMLEDTGLHHKRNEEAQDLSG 1064
Query: 806 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI- 864
G ++ LS++ A + +K++VLDE T+ VD + I + + T+++ H ++
Sbjct: 1065 GMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEAD 1124
Query: 865 IDCDRILLLDSGRVLEYDTPEELLSNEGSSF 895
+ DRI ++ GR+ TP L + G+ F
Sbjct: 1125 LLGDRIAIISQGRLYCSGTPLFLKNCFGTGF 1155
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 64.4 bits (158), Expect = 1e-11
Identities = 57/220 (25%), Positives = 93/220 (42%), Gaps = 50/220 (22%)
Query: 670 DVVLRYRP-ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 728
+ VL R + + +SF + + VGI G G G++ + LF + G I +DG
Sbjct: 2 EPVLEVRGLSVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDG 61
Query: 729 FDIAKFGLMDLRKILGI--IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIR 786
+ + D + GI +P+ +R +
Sbjct: 62 KPVTRRSPRDAIR-AGIAYVPE----------------------------DR-------K 85
Query: 787 RNSLGLDAQVSEAGENFSVGQR------QLLSLSRALLRRSKILVLDEATAAVDVRTDAL 840
R L LD V EN ++ Q + L+R L R ++L+LDE T VDV A
Sbjct: 86 REGLVLDLSV---AENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAE 142
Query: 841 IQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRV 878
I + IRE + +L+I+ L+ ++ CDRIL++ GR+
Sbjct: 143 IYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 1e-11
Identities = 54/223 (24%), Positives = 108/223 (48%), Gaps = 22/223 (9%)
Query: 683 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI---VELER--GRILIDGFDI--AKFG 735
L +S IP + ++G +G GKS+ L + R+ ++ R G + G ++ A
Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114
Query: 736 LMDLRKILGIIPQSPVLFSGTVRFN------LDPFSEHSDADLWEALERAHLKDAIRRNS 789
+ LR+ +G++ Q P F ++ N + + D + E+L RA L D ++
Sbjct: 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-- 172
Query: 790 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF 849
Q+ +G + S GQ+Q L ++RA+ +++++DE +A+D + I+ I E
Sbjct: 173 -----QLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELA 227
Query: 850 KSCTMLIIAHRLNTI--IDCDRILLLDSGRVLEYDTPEELLSN 890
+ T++I+ H + I + L G ++E+D +++ N
Sbjct: 228 EEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFEN 270
|
Length = 285 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 1e-11
Identities = 60/232 (25%), Positives = 107/232 (46%), Gaps = 40/232 (17%)
Query: 683 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG-----RILIDGFDI-AKFGL 736
L ++ IP ++G +G GKS++L L R+ +L G ++ +DG DI +
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 737 MDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALERA 779
DLR +G++ Q P F ++ N LD E S A LW+
Sbjct: 79 ADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWD----- 133
Query: 780 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 839
+KD ++ ++ GL S GQ+Q L ++R + ++++DE T+A+D
Sbjct: 134 EVKDRLKSHAFGL-----------SGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATH 182
Query: 840 LIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890
I++ + E K+ T++I+ H + DR G ++E+D + + SN
Sbjct: 183 KIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSN 234
|
Length = 249 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 1e-11
Identities = 57/218 (26%), Positives = 96/218 (44%), Gaps = 24/218 (11%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF--RIVELERGRILIDGFDIAKFGLMD 738
+L G++ T+ + I+G G+GKS++ T+ E+ G IL G D+ + D
Sbjct: 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLEL-EPD 72
Query: 739 LRKILGII--PQSPVLFSG--TVRFNLDPFSEHSDADLWEALERAHLKDAIRRN--SLGL 792
R G+ Q P G + F + A E L+ ++ LG+
Sbjct: 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGM 132
Query: 793 DAQVSEAGEN--FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL------IQKT 844
D + N FS G+++ + + L K+ +LDE + +D+ DAL I +
Sbjct: 133 DEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDI--DALKIVAEGINR- 189
Query: 845 IREEFKSCTMLIIAH--RLNTIIDCDRILLLDSGRVLE 880
+RE +S LII H RL I D + +L GR+++
Sbjct: 190 LREPDRSF--LIITHYQRLLNYIKPDYVHVLLDGRIVK 225
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 1e-11
Identities = 56/231 (24%), Positives = 115/231 (49%), Gaps = 37/231 (16%)
Query: 683 LHGLSFTIPPSDKVGIVGRTGAGKSSML------NTLFRIVELERGRILIDGFDI--AKF 734
L+ ++ I + ++G +G GKS+ L N L V++E G +L+DG +I
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIE-GEVLLDGKNIYDKDV 78
Query: 735 GLMDLRKILGIIPQSPVLFSGTVRFN------LDPFSEHSDAD--LWEALERAHL----K 782
+++LRK +G++ Q P F ++ N + + + D + AL++A L K
Sbjct: 79 DVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVK 138
Query: 783 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 842
D +++++L L S GQ+Q L ++R + + ++++DE T+A+D + I+
Sbjct: 139 DDLKKSALKL-----------SGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIE 187
Query: 843 KTIREEFKSCTMLIIAHRL---NTIIDCDRILLLDSGRVLEYDTPEELLSN 890
+ E K T++I+ H + + + D L+ G ++E++ E++
Sbjct: 188 DLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLM--GDLIEFNKTEKIFLE 236
|
Length = 251 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 1e-11
Identities = 59/238 (24%), Positives = 105/238 (44%), Gaps = 41/238 (17%)
Query: 666 IKFEDVVLRYR--PELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 723
+K E++ RY+ VL G+S +I + V IVG +G+GKS++L+ L + G
Sbjct: 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGE 61
Query: 724 ILIDGFDIAKFG---LMDLR-KILGIIPQ---------------SPVLFSGTVRFNLDPF 764
+L +G ++K LR K LG I Q P+L
Sbjct: 62 VLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSV------ 115
Query: 765 SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 824
+ + +E LE+ L+ I + + SE S G+RQ ++++RAL+ + ++
Sbjct: 116 -KEAKERAYEMLEKVGLEHRI-------NHRPSE----LSGGERQRVAIARALVNQPSLV 163
Query: 825 VLDEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 880
+ DE T +D +I + E + + L++ H L DR+L + G++
Sbjct: 164 LADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 1e-11
Identities = 55/201 (27%), Positives = 90/201 (44%), Gaps = 22/201 (10%)
Query: 70 GSLVAIVGGTGEGKTSLISAMLGELPP--VSDASAVIRGTV----------AYVPQVSWI 117
G L+A++G +G GKT+L++A+ P S ++ G AYV Q
Sbjct: 51 GELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLF 110
Query: 118 FNA-TVRDNILFGSAFE-PARY---EKAIDVTSLQHDLDLLPGGDVTEIGERGV--NISG 170
TVR++++F + P R EK V + L L + T IG G +SG
Sbjct: 111 IPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCAN-TRIGVPGRVKGLSG 169
Query: 171 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQ--LH 228
G+++R++ A + ++ + D+P S LD+ + V GKT + +Q
Sbjct: 170 GERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSE 229
Query: 229 FLSQVDRIILVHEGMVKEEGT 249
D+IIL+ EG V G+
Sbjct: 230 LFELFDKIILMAEGRVAYLGS 250
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 2e-11
Identities = 60/266 (22%), Positives = 125/266 (46%), Gaps = 15/266 (5%)
Query: 53 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML------GELP--PVSDASAVI 104
++A R L +++ + G V ++G TG GK++L+SA+L GE+ VS S +
Sbjct: 1228 TEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTL 1287
Query: 105 ---RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 161
R +PQ +IF+ T R N+ + K + L+ ++ P +
Sbjct: 1288 QTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVL 1347
Query: 162 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRV 221
+ G +S G KQ + +AR++ S + + + D+P + LD V Q+ + ++ S T +
Sbjct: 1348 VDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDP-VTLQIIRKTLKQSFSNCTVI 1406
Query: 222 LVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGE 281
L +++ L + + +++ VK+ + + L N LF++ M A +++ + + +
Sbjct: 1407 LSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSAADRLKLFPLHRRNSS 1466
Query: 282 TVDNKTSKPAANGVDNDLPKEASDTR 307
+ +P + + +E +TR
Sbjct: 1467 ---KRKPQPKITALREEAEEEVQNTR 1489
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.5 bits (166), Expect = 2e-11
Identities = 60/234 (25%), Positives = 96/234 (41%), Gaps = 63/234 (26%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----------------VSDASAVIR 105
++L + G + A++G G GK++L+ + G PP DA A
Sbjct: 26 GVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALA--A 83
Query: 106 GTVAYVPQ-VSWIFNATVRDNILFGSAFEP-------------ARYEKAIDVTSLQHDLD 151
G +A V Q +S + N +V +NI G EP R + + L D D
Sbjct: 84 G-IATVHQELSLVPNLSVAENIFLGR--EPTRRFGLIDRKAMRRRARELLARLGLDIDPD 140
Query: 152 LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 211
L G ++S Q+Q V +ARA+ ++ V I D+P +AL ++FD I
Sbjct: 141 TLVG-----------DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDL-I 188
Query: 212 RGEL--SGKTRVLVTNQLHFLSQV----DRII------LVHEGMVKEEGTFEDL 253
R L G + ++ H L +V DRI +V E + ++L
Sbjct: 189 R-RLKAQGVAIIYIS---HRLDEVFEIADRITVLRDGRVVGTRPTAAETSEDEL 238
|
Length = 500 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 2e-11
Identities = 65/237 (27%), Positives = 111/237 (46%), Gaps = 42/237 (17%)
Query: 56 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------ 103
E+ L N+N++I G V ++G TG GK++LI + G L P S +
Sbjct: 19 EKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKL 78
Query: 104 --IRGTVAYVPQVS--WIFNATVRDNILFG------SAFE-PARYEKAIDVTSLQHD--L 150
IR V V Q +F T+ +I FG S E R ++A+++ L ++
Sbjct: 79 SDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYK 138
Query: 151 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 210
D P +SGGQK+RV++A V + I D+P + LD GR
Sbjct: 139 DKSP-----------FELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPK-GRDEILNK 186
Query: 211 IRGELSGK---TRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNGELFQKL 263
I+ EL + T +LV++ + +++ DRII++++G + +GT ++ E + +
Sbjct: 187 IK-ELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKEVETLESI 242
|
Length = 287 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 2e-11
Identities = 59/254 (23%), Positives = 102/254 (40%), Gaps = 27/254 (10%)
Query: 8 VVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDI 67
++ A V+ ++ + LA K P P + +RN F++ A + INL I
Sbjct: 289 LLTAQVAFNKIAKLELAPYKADFPRPQAFPDWKTLELRNVRFAYQDNAF--HVGPINLTI 346
Query: 68 PVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAV-------IRGTVAYVPQVS 115
G LV ++GG G GK++L + G P S D V R + V
Sbjct: 347 KRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDY 406
Query: 116 WIFNATVRDNILFGSAF-EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 174
+F D +L P EK + L H L G + +S GQK+
Sbjct: 407 HLF-----DQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSN------LKLSTGQKK 455
Query: 175 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI-RGELSGKTRVLVTNQLHFLSQV 233
R+++ A+ D+ + D+ + D R+ + + + GKT +++ H+
Sbjct: 456 RLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHA 515
Query: 234 DRIILVHEGMVKEE 247
DR++ + G + E
Sbjct: 516 DRLLEMRNGQLSEL 529
|
Length = 546 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-11
Identities = 61/232 (26%), Positives = 108/232 (46%), Gaps = 32/232 (13%)
Query: 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM-LGELP---- 95
+I + + + L +I LD P G + ++G +G GK+SL+ + L E+P
Sbjct: 2 SIQLNGINCFYGAHQ---ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGT 58
Query: 96 -------------PVSDASAVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAI 141
P A +R V V Q ++ + TV+ N++ P R
Sbjct: 59 LNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEA----PCRVLGLS 114
Query: 142 DVTSLQHDLDLLPGGDVTEIGER-GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 200
+L LL + +R +++SGGQ+QRV++ARA+ V +FD+P +ALD
Sbjct: 115 KDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP 174
Query: 201 HVGRQVFDRCIRGELS--GKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGT 249
+ Q+ I EL+ G T+V+VT+++ + R++ + G + E+G
Sbjct: 175 EITAQIVS--IIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGD 224
|
Length = 242 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-11
Identities = 61/223 (27%), Positives = 94/223 (42%), Gaps = 40/223 (17%)
Query: 52 DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS------------- 98
+ E L + L + G VAIVG +G GK++L++ + G P S
Sbjct: 18 QGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKL 77
Query: 99 --DASAVIRG-TVAYVPQ-VSWIFNATVRDNILF-------GSAFEPARYEKAIDVTSLQ 147
DA A +R V +V Q I N T +N+ SA A + ++ L
Sbjct: 78 DEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLG 137
Query: 148 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 207
L P +SGG++QRV++ARA DV D+P LD G ++
Sbjct: 138 KRLTHYPA-----------QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIA 186
Query: 208 DRCIRGELS---GKTRVLVTNQLHFLSQVDRIILVHEGMVKEE 247
D + L+ G T VLVT+ ++ DR + + G + E+
Sbjct: 187 D--LLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227
|
Length = 228 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 2e-11
Identities = 58/223 (26%), Positives = 95/223 (42%), Gaps = 43/223 (19%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF---GLM 737
+L G+ + + V IVG +G+GKS++L L + + G + + G + K
Sbjct: 24 SILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARA 83
Query: 738 DLR-KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALER----AHLKDAIRRNS--- 789
LR + +G + QS F+L P ALE L+ +S
Sbjct: 84 ALRARHVGFVFQS---------FHLIPN--------LTALENVALPLELRGESSADSRAG 126
Query: 790 -------LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT----- 837
+GL +++ S G++Q ++L+RA R +L DE T +D T
Sbjct: 127 AKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIA 186
Query: 838 DALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 880
D L RE + T++++ H CDR L L SGR++E
Sbjct: 187 DLLFALN-RE--RGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226
|
Length = 228 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 3e-11
Identities = 60/221 (27%), Positives = 105/221 (47%), Gaps = 31/221 (14%)
Query: 57 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------ 104
R + ++L + G +V ++G G GKT+ ++G + P D+ ++
Sbjct: 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP--DSGKILLDGQDITKLPMH 70
Query: 105 ---RGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 160
R + Y+PQ + IF TV +NIL + E K L+ L+ +T
Sbjct: 71 KRARLGIGYLPQEASIFRKLTVEENIL--AVLEIRGLSKKEREEKLEELLEEF---HITH 125
Query: 161 IGER-GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD-RCIRGELSGK 218
+ + ++SGG+++RV +ARA+ +N + D+P + +D V D + I L +
Sbjct: 126 LRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIA---VQDIQKIIKILKDR 182
Query: 219 -TRVLVT--NQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 256
VL+T N LS DR +++EG V EGT E+++ N
Sbjct: 183 GIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAAN 223
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 3e-11
Identities = 49/213 (23%), Positives = 89/213 (41%), Gaps = 42/213 (19%)
Query: 56 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS 115
E L +++ ++P G + ++G G GK++L+ + G PP S GTV +VS
Sbjct: 34 EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDS-------GTVTVRGRVS 86
Query: 116 WIF--------NATVRDNILFGSAF------EPARYEKAIDVTSLQHDLDLLPGGDVTEI 161
+ T R+NI E I + +E+
Sbjct: 87 SLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEII--------------EFSEL 132
Query: 162 GERG----VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS- 216
G+ S G K R++ A A D+ + D+ L+ DA + R +R L
Sbjct: 133 GDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRR-LRELLKQ 191
Query: 217 GKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEG 248
GKT +LV++ + ++ DR +++ +G ++ +G
Sbjct: 192 GKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 3e-11
Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 47/230 (20%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLISAML------------------------GELP 95
L +N + G VA++G +G GK++++ ++ G L
Sbjct: 16 LDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLV 75
Query: 96 PVSDAS-AVIRGTVAYVPQVSWIF-NATVRDNILFGS----AFEPARYEKA----IDVTS 145
P + +R + V Q +F + TV DN+ A EK +D+
Sbjct: 76 PADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVG 135
Query: 146 LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 205
L D +P +SGGQ+QRV++ARA+ V +FD+ SALD + +
Sbjct: 136 LADKADHMP-----------AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGE 184
Query: 206 VFDRCIR-GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDL 253
V + R T +LVT+++ F + DR+ +G + E+G +++
Sbjct: 185 VLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEI 234
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 3e-11
Identities = 66/227 (29%), Positives = 112/227 (49%), Gaps = 37/227 (16%)
Query: 686 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL--ERGRI----LIDGFDIAKFGLMDL 739
L+F++ + +GIVG +G+GKS T F ++ L GRI +G +I +L
Sbjct: 35 LNFSLRAGETLGIVGESGSGKS---QTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91
Query: 740 RKI----LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEAL---ERAHLKDAIRRNSLGL 792
K+ + +I Q P+ +L+P+ + L E L + +A + L
Sbjct: 92 NKLRAEQISMIFQDPMT-------SLNPYMRVGE-QLMEVLMLHKGMSKAEAFEESVRML 143
Query: 793 DA-QVSEAGE-------NFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 844
DA ++ EA + FS G RQ + ++ ALL R K+L+ DE T A+DV A I
Sbjct: 144 DAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTL 203
Query: 845 IRE---EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 887
+ E EF + +++I H L + CD++L++ +GR +EY ++
Sbjct: 204 LNELKREFNT-AIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDV 249
|
Length = 330 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 66.9 bits (163), Expect = 3e-11
Identities = 105/515 (20%), Positives = 196/515 (38%), Gaps = 41/515 (7%)
Query: 388 SLLSFGQV-LVTLANSYWLIISSLYAAKR----LHDAMLHSILRAPMVFFHTNPLGRIIN 442
SL SFG + L+ L I YA L A+ IL AP+ +I
Sbjct: 55 SLFSFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIP 114
Query: 443 RFAKDLGDIDR------NVAVFVNMFMGQVSQL--LSTFVLIGIVSTMSLWAIMPLLLLF 494
D+ I+ +A+ + +F ++ L LS + +S + + LL F
Sbjct: 115 LLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAA-QLLAF 173
Query: 495 YAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNI 554
+ ++ + E + T + + ++G+ R A+ + + D +I
Sbjct: 174 MGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIR--RLSFAHGAIQESANNIADLHI 231
Query: 555 RYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNIT 614
L+ + A + + ++ G ++ A FA + + A + LL Y
Sbjct: 232 IEILIFIAAENFGQLLFFLLIGCALFAAAMFASIDAAAIS-----AFVLALL--YIKGPL 284
Query: 615 SLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP--SSGSIKFEDVV 672
+L + L + + A+ + + G P + +++ S SI+ +DV
Sbjct: 285 EMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDV- 343
Query: 673 LRYRPELPP-----VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 727
P+ P L + I D V IVG G GKS++ + + G IL+D
Sbjct: 344 -HMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLD 402
Query: 728 GFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRR 787
G ++ D R + I LF + + + +A + L+R + D ++
Sbjct: 403 GAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQY--LQRLEIADKVKI 460
Query: 788 NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE 847
G + S GQ++ L+L A L IL+ DE A D + +
Sbjct: 461 EDGGFSTTTA-----LSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLP 515
Query: 848 EFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLE 880
+ K T++II+H D+I+ L +G +++
Sbjct: 516 DLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVK 550
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 4e-11
Identities = 69/269 (25%), Positives = 120/269 (44%), Gaps = 38/269 (14%)
Query: 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 101
I ++N F + E+ TL +++ + G ++I+G G GK++ + + G L S
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 102 AV------------IRGTVAYVPQV--SWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 147
+ IR + V Q + ATV D++ FG + +E+ +
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEM--KERVN 122
Query: 148 HDLDLLPGGDVTEIGERG-VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 206
L+L+ + + ER +SGGQKQRV++A AV + I D+ S LD GR
Sbjct: 123 EALELV---GMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPE-GRLE 178
Query: 207 FDRCIRG--ELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGE------ 258
+ I+G + T + +T+ L ++ DR++++ G V+ T +L + G
Sbjct: 179 LIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRGNDLLQLG 238
Query: 259 --------LFQKLMENAGKMEE-YVEEKE 278
L Q L +N + E Y+ EKE
Sbjct: 239 LDIPFTTSLVQSLRQNGYDLPEGYLTEKE 267
|
Length = 279 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 4e-11
Identities = 60/214 (28%), Positives = 109/214 (50%), Gaps = 35/214 (16%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIRGTV-------- 108
N+NL I G++V ++G +G GKT+++ + G P D V ++
Sbjct: 24 NLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMV 83
Query: 109 ----AYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGER 164
A P +S + +N+ +G + K ++ L+L+ D+ +R
Sbjct: 84 FQSYALFPHMS------LGENVGYG--LKMLGVPKEERKQRVKEALELV---DLAGFEDR 132
Query: 165 GVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS---GKTR 220
V+ ISGGQ+QRV++ARA+ V +FD+PLS LDA++ R + ++ IR EL T
Sbjct: 133 YVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREK-IR-ELQQQFNITS 190
Query: 221 VLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDL 253
+ VT +Q + D +I++++G + + G+ ++L
Sbjct: 191 LYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
Length = 351 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (156), Expect = 4e-11
Identities = 59/233 (25%), Positives = 108/233 (46%), Gaps = 41/233 (17%)
Query: 683 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG-----RILIDGFDI--AKFG 735
L+ ++ I + ++G +G GKS+ L TL R+ +L G ++ +G +I F
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 736 LMDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALER 778
+++LR+ +G++ Q+P F ++ N LD E S + LW
Sbjct: 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWN---- 138
Query: 779 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 838
+KD + N+L L S GQ+Q L ++R L ++++DE T+A+D +
Sbjct: 139 -EVKDKLNTNALSL-----------SGGQQQRLCIARTLAIEPNVILMDEPTSALDPIST 186
Query: 839 ALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890
I++ I +S T++I+ H + DR +G + E + +EL N
Sbjct: 187 GKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFN 239
|
Length = 254 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 64.2 bits (156), Expect = 5e-11
Identities = 53/225 (23%), Positives = 103/225 (45%), Gaps = 16/225 (7%)
Query: 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 101
I I + +++ +P L ++ I G V I G TG GK+SL A + + D
Sbjct: 20 IKIHDLCVRYENNL-KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFF-RMVDIFDGK 77
Query: 102 AVI-------------RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 148
VI R ++ + Q +F+ ++R N+ R +A+++ L++
Sbjct: 78 IVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKN 137
Query: 149 DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 208
+ LPGG + E G N S GQ+Q +ARA S + I D+ +++D +
Sbjct: 138 MVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMAT-ENILQ 196
Query: 209 RCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 253
+ + + +T V + +++ + D ++++ G++ E T E+L
Sbjct: 197 KVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENL 241
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 5e-11
Identities = 63/238 (26%), Positives = 110/238 (46%), Gaps = 48/238 (20%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLI-----------SAMLGELPPVSDASA----VI 104
L NINL+I G VAI+G +G GK++L+ ++L E ++ +
Sbjct: 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKL 77
Query: 105 RGTVAYVPQ-VSWIFNATVRDNILFG------------SAFEPARYEKAIDVTSLQHDLD 151
R + + Q + I TV +N+L G F E+A+ L+
Sbjct: 78 RRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSA------LE 131
Query: 152 LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--R 209
+ G + +R +SGGQ+QRV++ARA+ D+ + D+P+++LD +QV D +
Sbjct: 132 RV--GLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLK 189
Query: 210 CIRGELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLSNNGELFQKL 263
I E G T V++ LH + DRI+ + G + +G +L + E+ + +
Sbjct: 190 RINKED-GIT-VIIN--LHQVDLAKKYADRIVGLKAGEIVFDGAPSELDD--EVLRHI 241
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 5e-11
Identities = 57/224 (25%), Positives = 105/224 (46%), Gaps = 33/224 (14%)
Query: 56 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI----------- 104
+R + +++L++ G +V ++G G GKT+ ++G + P D+ ++
Sbjct: 16 KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRP--DSGKILLDDEDITKLPM 73
Query: 105 ----RGTVAYVPQVSWIF-NATVRDNI-LFGSAFEPARY--EKAIDVTSLQHDLDLLPGG 156
R + Y+PQ + IF TV DNI E E+ ++ +L + +
Sbjct: 74 HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLR 133
Query: 157 DVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD-RCIRGEL 215
D + ++SGG+++RV +ARA+ +N + D+P + +D V D + I L
Sbjct: 134 D-----SKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIA---VIDIQRIIKHL 185
Query: 216 SGK-TRVLVT--NQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 256
+ VL+T N L DR ++ +G V EG+ E++ NN
Sbjct: 186 KDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229
|
Length = 243 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 5e-11
Identities = 57/221 (25%), Positives = 98/221 (44%), Gaps = 41/221 (18%)
Query: 688 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIP 747
+ + +G++G GAGK+++L + ++ +G + + G K + +G +P
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKG-----WRHIGYVP 55
Query: 748 QS-------PVLFSGTVRFN----LDPFSEHSDAD---LWEALERAHLKDAIRRNSLGLD 793
Q P+ + TV + AD + +AL R L + R
Sbjct: 56 QRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADR------ 109
Query: 794 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC- 852
GE S GQRQ + ++RAL R +L+LDE +D+ T Q+ + E F
Sbjct: 110 ----PVGE-LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPT----QELLTELFIELA 160
Query: 853 ----TMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 888
+L+ H L + CDR++LL+ GRV+ TP++L
Sbjct: 161 GAGTAILMTTHDLAQAMATCDRVVLLN-GRVIADGTPQQLQ 200
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 5e-11
Identities = 54/226 (23%), Positives = 94/226 (41%), Gaps = 52/226 (23%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE---LERGRILIDG--FDIAKFGL 736
+L+ +S + + I+G +G+GK+++L+ + VE G+IL +G +F
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQF-- 79
Query: 737 MDLRKILGIIPQSPVLFSG-TVRFNL---------DPFSEHSDADLWEALERAHLKDAIR 786
+K + + Q +L G TVR L S+ E + L
Sbjct: 80 ---QKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRI 136
Query: 787 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR 846
+L + S G+R+ +S++ LL K+L+LDE T+ +D T + T+
Sbjct: 137 GGNLV---------KGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLS 187
Query: 847 EEFKSCTMLIIAHRLNTIIDC-------------DRILLLDSGRVL 879
+ +A R N I+ DRILLL SG ++
Sbjct: 188 Q---------LARR-NRIVILTIHQPRSDLFRLFDRILLLSSGEIV 223
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 7e-11
Identities = 64/251 (25%), Positives = 117/251 (46%), Gaps = 51/251 (20%)
Query: 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 101
I+I N S+ +K L +++LDIP G + +I+G G GK++L+S M L
Sbjct: 2 ITIENVSKSYGTK---VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMM-SRLLKKDSGE 57
Query: 102 AVIRG-------------TVAYVPQVSWI-FNATVRDNILFGSAFEPARY---------- 137
I G ++ + Q + I TVRD + FG R+
Sbjct: 58 ITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFG------RFPYSQGRLTKE 111
Query: 138 -EKAIDVTSLQHDLDLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPL 195
+ I+ ++ L + ++ +R ++ +SGGQ+QR +A + ++D + D+PL
Sbjct: 112 DRRIINEA-----IEYL---HLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPL 163
Query: 196 SALDAHVGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 252
+ LD Q+ R + EL GKT V+V + ++F S D I+ + G V ++G+ ++
Sbjct: 164 NNLDMKHSVQIMKILRRLADEL-GKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDE 222
Query: 253 L---SNNGELF 260
+ E++
Sbjct: 223 IIQPEILSEIY 233
|
Length = 252 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 7e-11
Identities = 64/232 (27%), Positives = 104/232 (44%), Gaps = 30/232 (12%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL--FRIVELERGRILIDGFDIAKFGLMD 738
+L G++ T+ + I+G G+GKS++ T+ E+ G IL DG DI +
Sbjct: 18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDIL-----E 72
Query: 739 L------RKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNS--L 790
L R + + Q PV G V N D +A ++ + L
Sbjct: 73 LSPDERARAGIFLAFQYPVEIPG-VT-NSDFLRAAMNARRGARGILPEFIKELKEKAELL 130
Query: 791 GLDAQVSE--AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL--IQKTIR 846
GLD + E E FS G+++ + + LL K+ +LDE + +D+ DAL + + I
Sbjct: 131 GLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDI--DALKIVAEGI- 187
Query: 847 EEFKS--CTMLIIAH--RLNTIIDCDRILLLDSGRVLEYDTPE--ELLSNEG 892
+ +LII H RL I D++ +L GR+++ PE E L +G
Sbjct: 188 NALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDPELAEELEEKG 239
|
Length = 251 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 7e-11
Identities = 49/214 (22%), Positives = 105/214 (49%), Gaps = 11/214 (5%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 741
+ +SF +PP + G++G GAGK++ + ++E G I +G +++ +++
Sbjct: 17 AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKN 72
Query: 742 ILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 800
+G +P+ L+ TV L +E E + L+ + R L + + ++
Sbjct: 73 RIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEI--QKKLQAWLER--LEIVGKKTKKI 128
Query: 801 ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD-VRTDALIQKTIREEFKSCTMLIIAH 859
+ S G +Q + A++ ++L+LDE + +D V + L + + T++ +H
Sbjct: 129 KELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSH 188
Query: 860 RLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 892
R+ + + CDR+L+L G+ + Y T E++ + G
Sbjct: 189 RMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222
|
Length = 300 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (154), Expect = 7e-11
Identities = 50/196 (25%), Positives = 99/196 (50%), Gaps = 31/196 (15%)
Query: 686 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAKFGL--MD 738
+S P + I+G +G GKS++L ++ R+ +L G+IL+D DI G+ +
Sbjct: 23 VSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVS 82
Query: 739 LRKILGIIPQSPVLFSG-------TVRFNLDPFSEHSDAD--LWEALERAHL----KDAI 785
+R+ +G++ Q P F + L+ S+AD + +L+R L KD +
Sbjct: 83 IRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRL 142
Query: 786 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 845
+ N++ L S GQ+Q L ++R + + +++++DE +A+D + I++ I
Sbjct: 143 KSNAMEL-----------SGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELI 191
Query: 846 REEFKSCTMLIIAHRL 861
E + T++I+ H +
Sbjct: 192 EELKEKYTIIIVTHNM 207
|
Length = 252 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 8e-11
Identities = 56/228 (24%), Positives = 103/228 (45%), Gaps = 34/228 (14%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
++ E+V R+ L L+ I + V ++G +G GK++ L + + E GRI
Sbjct: 1 VELENVTKRFGNV--TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIY 58
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHL-KD 783
I G D+ D R I ++ Q+ L+ TV N+ F L+ + KD
Sbjct: 59 IGGRDVTDLPPKD-RDI-AMVFQNYALYPHMTVYDNI-AF----------GLKLRKVPKD 105
Query: 784 AIRR------NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 837
I L ++ + + S GQRQ ++L RA++R K+ ++DE + +
Sbjct: 106 EIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNL---- 161
Query: 838 DALIQKTIREEFKS------CTMLIIAH-RLNTIIDCDRILLLDSGRV 878
DA ++ +R E K T + + H ++ + DRI +++ G++
Sbjct: 162 DAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQI 209
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 8e-11
Identities = 59/199 (29%), Positives = 89/199 (44%), Gaps = 43/199 (21%)
Query: 31 PNPPLTSGLPAISIRNGYFSW-DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI-- 87
+ + I +RN F + A L NINLDI + A +G +G GK++L+
Sbjct: 3 MMSMVATAPSKIQVRNLNFYYGKFHA----LKNINLDIAKNQVTAFIGPSGCGKSTLLRT 58
Query: 88 ---------------SAML-GE--LPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFG 129
+L GE L P D A++R V V Q F ++ DNI FG
Sbjct: 59 FNRMYELYPEQRAEGEILLDGENILTPKQDI-ALLRAKVGMVFQKPTPFPMSIYDNIAFG 117
Query: 130 -SAFEP-------ARYEKAIDVTSLQHDL-DLLPGGDVTEIGERGVNISGGQKQRVSMAR 180
FE R E A+ +L +++ D L + G ++SGGQ+QR+ +AR
Sbjct: 118 VRLFEKLSRAEMDERVEWALTKAALWNEVKDKL--------HQSGYSLSGGQQQRLCIAR 169
Query: 181 AVYSNSDVFIFDDPLSALD 199
+ +V + D+P SALD
Sbjct: 170 GIAIRPEVLLLDEPCSALD 188
|
Length = 260 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 8e-11
Identities = 44/178 (24%), Positives = 81/178 (45%), Gaps = 12/178 (6%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 741
+ GLSFT+ + + + G G+GK+++L L + GR+L++G + R
Sbjct: 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARG 74
Query: 742 ILGIIPQSPVLFSGTVRFNLDPF-SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 800
+L + + + +V NL + ++HSD + EAL R GL+
Sbjct: 75 LLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARV-----------GLNGFEDRPV 123
Query: 801 ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIA 858
S GQ++ ++L+R LL + +LDE T A+D A + + M+++
Sbjct: 124 AQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLT 181
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 9e-11
Identities = 52/188 (27%), Positives = 96/188 (51%), Gaps = 18/188 (9%)
Query: 66 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQ-VSWIFNATVRD 124
+I G ++ I+G G GKT+ + + G + P + ++ V+Y PQ +S ++ TV D
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLK--VSYKPQYISPDYDGTVED 420
Query: 125 NILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVY 183
+ + + + T + L+L + ER V +SGG+ QRV++A A+
Sbjct: 421 ---LLRSAIRSAFGSSYFKTEIVKPLNLED------LLERPVDELSGGELQRVAIAAALS 471
Query: 184 SNSDVFIFDDPLSALDAHVGRQVFDRCIR--GELSGKTRVLVTNQLHFLSQV-DRIILVH 240
+D+++ D+P + LD R + + IR E + KT ++V + ++ + V DR+I V
Sbjct: 472 READLYLLDEPSAYLDVE-QRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLI-VF 529
Query: 241 EGMVKEEG 248
EG + G
Sbjct: 530 EGEPGKHG 537
|
Length = 591 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (156), Expect = 9e-11
Identities = 52/190 (27%), Positives = 94/190 (49%), Gaps = 12/190 (6%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKF 734
VLH L+ I + +G +G GKS+ L L ++ +L G I G + K
Sbjct: 97 VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156
Query: 735 GLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHS---DADLWEALERAHLKDAIRRNSLG 791
++LR +G++ Q P F ++ N+ ++ D + E + LK A + +
Sbjct: 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVK 216
Query: 792 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS 851
D + +AG S GQ+Q L ++RA+ ++L++DE T+A+D A I++ I E K
Sbjct: 217 DD--LDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKK 274
Query: 852 CTMLIIAHRL 861
+++I+ H +
Sbjct: 275 YSIIIVTHSM 284
|
Length = 329 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 1e-10
Identities = 54/212 (25%), Positives = 92/212 (43%), Gaps = 33/212 (15%)
Query: 63 INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVAYV 111
+N + G + +G G GKT+ I + L P S + V +R ++ V
Sbjct: 12 VNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIV 71
Query: 112 PQ-VSWIFNATVRDNILFGSAF----EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV 166
PQ S + T R+N+ + E+A + LL ++ E +R V
Sbjct: 72 PQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEE---------LLELFELGEAADRPV 122
Query: 167 -NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTN 225
SGG ++R+ +A ++ DV D+P + LD R ++D IR +L+T
Sbjct: 123 GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDY-IRALKEEGVTILLTT 181
Query: 226 QLHFLSQV----DRIILVHEGMVKEEGTFEDL 253
H++ + DRI ++ G + EGT E+L
Sbjct: 182 --HYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 1e-10
Identities = 66/254 (25%), Positives = 111/254 (43%), Gaps = 32/254 (12%)
Query: 10 NANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPV 69
+A V+ ++ + LA K P P + +RN F++ ++ INL I
Sbjct: 291 SAQVAFNKLNKLALAPYKAEFPRPQAFPDWQTLELRNVTFAYQ--DNGFSVGPINLTIKR 348
Query: 70 GSLVAIVGGTGEGKTSLISAML--GELPPVS-----DASAVIRGT-VAYVPQVSWIFNAT 121
G L+ ++GG G GK++L AML G P S D V Y S +F
Sbjct: 349 GELLFLIGGNGSGKSTL--AMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFT-- 404
Query: 122 VRDNILF-------GSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 174
D LF G PA EK ++ + H L+ L G ++ + +S GQK+
Sbjct: 405 --DFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLE-LEDGRISNL-----KLSKGQKK 456
Query: 175 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL--SGKTRVLVTNQLHFLSQ 232
R+++ A+ D+ + D+ + D H R+ F + + L GKT +++ H+
Sbjct: 457 RLALLLALAEERDILLLDEWAADQDPHF-RREFYQVLLPLLQEMGKTIFAISHDDHYFIH 515
Query: 233 VDRIILVHEGMVKE 246
DR++ + G + E
Sbjct: 516 ADRLLEMRNGQLSE 529
|
Length = 547 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 1e-10
Identities = 61/212 (28%), Positives = 101/212 (47%), Gaps = 48/212 (22%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDI--AKF 734
+L G+S I S I+G +G GKS+ L L R+ ELE GR+ +I +
Sbjct: 22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRV 81
Query: 735 GLMDLRKILGIIPQSPVLFSGTV---------------RFNLDPFSEHS--DADLWEALE 777
L LR+ + ++ P LF +V + +D E + DADLW+
Sbjct: 82 NLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWD--- 138
Query: 778 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD--- 834
+K I +++L L S GQ+Q L ++RAL + K+L++DE +D
Sbjct: 139 --EIKHKIHKSALDL-----------SGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIA 185
Query: 835 -VRTDALIQK-TIREEFKSCTMLIIAHRLNTI 864
++ ++LIQ +R E TM+I++H L+ +
Sbjct: 186 SMKVESLIQSLRLRSEL---TMVIVSHNLHQV 214
|
Length = 261 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 1e-10
Identities = 66/240 (27%), Positives = 111/240 (46%), Gaps = 55/240 (22%)
Query: 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 100
+ ++ S+D K + I+LD+ G + +VG +G GK++L+ M+ L ++
Sbjct: 3 GLKLQAVRKSYDGKT--QVIKGIDLDVADGEFIVLVGPSGCGKSTLLR-MVAGLERITSG 59
Query: 101 SAVIRGTV-----------AYVPQVSWIFN------ATVRDNILFG-------SAFEPAR 136
I G V A V Q N +VR+N+ +G A R
Sbjct: 60 EIWIGGRVVNELEPADRDIAMVFQ-----NYALYPHMSVRENMAYGLKIRGMPKAEIEER 114
Query: 137 YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS 196
+A + L+ LD P R +SGGQ+QRV+M RA+ VF+FD+PLS
Sbjct: 115 VAEAARILELEPLLDRKP---------R--ELSGGQRQRVAMGRAIVREPAVFLFDEPLS 163
Query: 197 ALDAHVGRQVFDRCIRGELS------GKTRVLVT-NQLHFLSQVDRIILVHEGMVKEEGT 249
LDA + Q +R E+ T + VT +Q+ ++ DR+++++ G+ ++ GT
Sbjct: 164 NLDAKLRVQ-----MRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGT 218
|
Length = 356 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 2e-10
Identities = 45/210 (21%), Positives = 89/210 (42%), Gaps = 26/210 (12%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVAY 110
++ + G + ++G G GKT+ I + L P S + V +R +
Sbjct: 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGI 77
Query: 111 VPQVSWIFNA-TVRDNI-LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-N 167
V Q + + T +N+ + + E+ + +LL + E +R V
Sbjct: 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERR------ERIDELLDFVGLLEAADRLVKT 131
Query: 168 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL 227
SGG ++R+ +AR++ +V D+P LD V++ + + +L+T
Sbjct: 132 YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTT-- 189
Query: 228 HFLSQV----DRIILVHEGMVKEEGTFEDL 253
H++ + DR+ ++ G + EGT E+L
Sbjct: 190 HYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 2e-10
Identities = 61/243 (25%), Positives = 109/243 (44%), Gaps = 28/243 (11%)
Query: 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG------- 92
I +N F + S A TL +++ +IP G +IVG G GK+++ M+G
Sbjct: 6 SIIVFKNVSFQYQSDASF-TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSG 64
Query: 93 -----ELPPVSDASAVIR---GTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAID-V 143
D +R G V P ++ + V+ ++ FG Y++ V
Sbjct: 65 EIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFV-GSIVKYDVAFGLENHAVPYDEMHRRV 123
Query: 144 TSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 203
+ +D+L D +SGGQKQRV++A + N V I D+ S LD
Sbjct: 124 SEALKQVDMLERAD-----YEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPD-A 177
Query: 204 RQVFDRCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDLSNNGELF 260
RQ +R ++ + + + + H LS+ D +I++++G V +EGT ++ ++ E
Sbjct: 178 RQNLLDLVR-KVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHAEEL 236
Query: 261 QKL 263
++
Sbjct: 237 TRI 239
|
Length = 269 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 2e-10
Identities = 60/228 (26%), Positives = 112/228 (49%), Gaps = 22/228 (9%)
Query: 673 LRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG---F 729
L +R L +FT+P + G +G+GK+S++N + + + GRI ++G
Sbjct: 4 LNFRQRLGNFALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLV 63
Query: 730 DIAK--FGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIR 786
D K F + R+I G + Q LF TVR NL S RA +
Sbjct: 64 DAEKGIFLPPEKRRI-GYVFQDARLFPHYTVRGNLRYGMWKSM--------RAQFDQLVA 114
Query: 787 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV-RTDALIQ--K 843
LG++ + S G++Q +++ RALL ++L++DE A++D+ R ++ +
Sbjct: 115 --LLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLE 172
Query: 844 TIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890
+R+E +L ++H L+ ++ DR+++L++G+V EE+ +
Sbjct: 173 RLRDEIN-IPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219
|
Length = 352 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 2e-10
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 22/194 (11%)
Query: 63 INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--------DASAVIRGTVAYVPQV 114
I+ + G + ++G G GKT+ I +LG + P S R + Y+P+
Sbjct: 19 ISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEE 78
Query: 115 SWIF-NATVRDNIL-FGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN-ISGG 171
++ V D ++ + E + L+L +E + V +S G
Sbjct: 79 RGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLEL------SEYANKRVEELSKG 132
Query: 172 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL--SGKTRVLVTNQLHF 229
+Q+V AV + ++ I D+P S LD V ++ IR EL +GKT +L T+Q+
Sbjct: 133 NQQKVQFIAAVIHDPELLILDEPFSGLDP-VNVELLKDVIR-ELARAGKTVILSTHQMEL 190
Query: 230 LSQV-DRIILVHEG 242
+ ++ DR++L+++G
Sbjct: 191 VEELCDRVLLLNKG 204
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 61/233 (26%), Positives = 100/233 (42%), Gaps = 36/233 (15%)
Query: 54 KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG------- 106
+ L NIN P S +A++G G GK++L G L P S S +IRG
Sbjct: 14 SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTS-GSVLIRGEPITKEN 72
Query: 107 ------TVAYVPQVS--WIFNATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLD 151
V V Q IF+ TV +I FG R A+ + L+ D
Sbjct: 73 IREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRD 132
Query: 152 LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 211
+P ++SGG+K+RV++A + V + D+P + LD +++ D
Sbjct: 133 RVPH-----------HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLN 181
Query: 212 R-GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNNGELFQK 262
E G T + T+QL + ++ D I ++ +G + GT E++ +L +
Sbjct: 182 DLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDLLAR 234
|
Length = 277 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 60/229 (26%), Positives = 111/229 (48%), Gaps = 32/229 (13%)
Query: 683 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG---------FDIAK 733
L+ LSF++ P + ++G GAGK+++++ + + G +L DG IA+
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80
Query: 734 FGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRN---- 788
G+ RK Q P +F TVR NL+ + + D ++ +L A L+ RR
Sbjct: 81 AGIG--RKF-----QKPTVFENLTVRENLE-LALNRDKSVFASL-FARLRAEERRRIDEL 131
Query: 789 --SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT-- 844
++GL + S GQ+Q L + L + K+L+LDE A + TDA +KT
Sbjct: 132 LATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM---TDAETEKTAE 188
Query: 845 -IREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 891
++ ++L++ H + + + D++ +L G VL + +E+ ++
Sbjct: 189 LLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQNDP 237
|
Length = 249 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 46/185 (24%), Positives = 101/185 (54%), Gaps = 20/185 (10%)
Query: 690 IPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKFGLMDLRKI 742
IP ++G +G GKS++L +L R+ +L +GR+L DG D+ + +++R+
Sbjct: 36 IPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRR 95
Query: 743 LGIIPQSPVLFSGTVRFNL------DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQV 796
+G++ Q P F ++ N+ + ++ D + +L +A + D + ++
Sbjct: 96 IGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKD-------KL 148
Query: 797 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLI 856
+E+G + S GQ+Q L ++R + +++++DE +A+D + I++T+ E K+ T++I
Sbjct: 149 NESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVI 208
Query: 857 IAHRL 861
+ H +
Sbjct: 209 VTHNM 213
|
Length = 269 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 56/230 (24%), Positives = 112/230 (48%), Gaps = 23/230 (10%)
Query: 686 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR-KILG 744
+SFT+ + I+G G+GKS++ L ++E G ILI+ + FG R K +
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLH-FGDYSFRSKRIR 90
Query: 745 IIPQSPVLFSGTVRFN--------LD-PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQ 795
+I Q P N LD P ++D + + ++ + + +R L L
Sbjct: 91 MIFQDP-----NTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQ--IFETLRMVGL-LPDH 142
Query: 796 VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD--VRTDALIQKTIREEFKSCT 853
+ + GQ+Q ++L+RAL+ R KI++ DEA A++D +R+ + +E + +
Sbjct: 143 ANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGIS 202
Query: 854 MLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSK-MVQS 901
+ + + I D++L++ G V+E + ++L++ +K +++S
Sbjct: 203 YIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPLHELTKRLIES 252
|
Length = 267 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 3e-10
Identities = 50/233 (21%), Positives = 108/233 (46%), Gaps = 29/233 (12%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI-AKFGLMD-- 738
L+ +S+T + I+G +G+GKS+++ +++ + G I + I K +
Sbjct: 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100
Query: 739 -------------LRKILGIIPQSP--VLFSGTVRFNL--DPFSEHSDADLWEALERAHL 781
LR+ + ++ Q P LF T+ ++ P + L A
Sbjct: 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVA------LGVKKSEAKK 154
Query: 782 KDAIRRNSLGLDAQVSEAGE-NFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 840
N +GLD E S GQ++ ++++ L + +IL+ DE TA +D + +
Sbjct: 155 LAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHE 214
Query: 841 IQKTIREEFKSC-TMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 891
+ + I + + T+ +I H + +++ D ++++D G++L+ TP E+ +++
Sbjct: 215 MMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQ 267
|
Length = 320 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.9 bits (150), Expect = 3e-10
Identities = 50/199 (25%), Positives = 96/199 (48%), Gaps = 30/199 (15%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKF 734
+L ++ IP + ++G +G GKS+ + TL R+ +L G I +DG DI
Sbjct: 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77
Query: 735 GLMDLRKILGIIPQSPVLFSGTVRFNL------------DPFSEHSDADLWEALERAHLK 782
+++LRK +G++ Q P F ++ N+ D E + L A +K
Sbjct: 78 DVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVK 137
Query: 783 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 842
D + +++LGL S GQ+Q L ++R + +++++DE +A+D + I+
Sbjct: 138 DKLDKSALGL-----------SGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIE 186
Query: 843 KTIREEFKSCTMLIIAHRL 861
I + + T++I+ H +
Sbjct: 187 DLIHKLKEDYTIVIVTHNM 205
|
Length = 250 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 3e-10
Identities = 61/236 (25%), Positives = 105/236 (44%), Gaps = 29/236 (12%)
Query: 684 HGLSFTIPPSDKVGIVGRTGAGKS----SMLNTLFRIVELERGRILIDGFDIAKFGLMDL 739
L+ ++ + + +VG +G+GKS ++L L + G IL+DG + L
Sbjct: 3 QDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLL--PLSIR 60
Query: 740 RKILGIIPQSPV-----LFS------GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRN 788
+ + I Q+P LF+ T+R +L S+ + A + EALE L D
Sbjct: 61 GRHIATIMQNPRTAFNPLFTMGNHAIETLR-SLGKLSKQARALILEALEAVGLPDPEEV- 118
Query: 789 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE- 847
L + S G Q + ++ ALL L+ DE T +DV A + K +RE
Sbjct: 119 ---LKKYPFQ----LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLREL 171
Query: 848 -EFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 901
+ +L+I H L + D + ++D GR++E T +E+ N ++ + S
Sbjct: 172 RQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTRKLLS 227
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 3e-10
Identities = 52/225 (23%), Positives = 102/225 (45%), Gaps = 25/225 (11%)
Query: 683 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 742
L+ LS + P + I+G GAGK++M++ + + G +L G D+ + +I
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTG---LPEHQI 74
Query: 743 --LGIIP--QSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRR------NSLG 791
GI Q P +F TV NL+ + D ++ +L L + ++G
Sbjct: 75 ARAGIGRKFQKPTVFENLTVFENLE-LALPRDKSVFASL-FFRLSAEEKDRIEEVLETIG 132
Query: 792 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT---IREE 848
L + S GQ+Q L + L++ K+L+LDE A + TD +KT ++
Sbjct: 133 LADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM---TDEETEKTAELLKSL 189
Query: 849 FKSCTMLIIAHRLNTI--IDCDRILLLDSGRVLEYDTPEELLSNE 891
+++++ H + + I ++ +L G VL + +++ ++
Sbjct: 190 AGKHSVVVVEHDMEFVRSIAD-KVTVLHQGSVLAEGSLDQVQADP 233
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (149), Expect = 3e-10
Identities = 54/222 (24%), Positives = 107/222 (48%), Gaps = 22/222 (9%)
Query: 685 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAKFGL--M 737
++ + ++G +G GK++ L + R+ +L GRIL+DG DI + +
Sbjct: 22 NVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81
Query: 738 DLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLG------ 791
+R+ +G++ Q P F F+ + + L +R HL + R+ G
Sbjct: 82 AMRRRVGMVFQKPNPFPTMSVFD----NVVAGLKLAGIRDRDHLMEVAERSLRGAALWDE 137
Query: 792 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS 851
+ ++ S GQ+Q L ++RAL +IL++DE T+A+D + A I+ + + K
Sbjct: 138 VKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKV 197
Query: 852 CTMLIIAHRLNT---IIDCDRILLLDSGRVLEYDTPEELLSN 890
T++I+ H ++ + D L+ G ++E+ ++L +N
Sbjct: 198 TTIIIVTHNMHQAARVSDTTSFFLV--GDLVEHGPTDQLFTN 237
|
Length = 252 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 3e-10
Identities = 48/196 (24%), Positives = 91/196 (46%), Gaps = 27/196 (13%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI----DGFDIAKFG- 735
PVL +S T+ + V + G +GAGKS++L +L+ + GRIL+ D+A+
Sbjct: 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81
Query: 736 --LMDLRK--------ILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 785
++++R+ L +IP+ + +P E A RA ++ +
Sbjct: 82 REVLEVRRKTIGYVSQFLRVIPRVS-----ALEVVAEPLLERGVPRE-AARARA--RELL 133
Query: 786 RRNSLGLDAQV-SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 844
R L + ++ FS G++Q ++++R + IL+LDE TA++D ++ +
Sbjct: 134 AR--LNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVEL 191
Query: 845 IREEFKS-CTMLIIAH 859
I E ++ I H
Sbjct: 192 IAEAKARGAALIGIFH 207
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 3e-10
Identities = 69/279 (24%), Positives = 116/279 (41%), Gaps = 34/279 (12%)
Query: 598 AFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIE-LPSEAPLVIESNRP 656
A +G L+ ++T L R+ +L L+ V+ GN+ E E R
Sbjct: 378 KAADALGRLMLAGRDMTRLAGFTARVDTLL-QVLDDVKS-GNFKRPRVEEIESGREGGRN 435
Query: 657 PPGWPSSGS-------IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSM 709
P G IKFE++ L P ++ LSF +P + + I G G GKSS+
Sbjct: 436 SNLVPGRGIVEYQDNGIKFENIPL-VTPNGDVLIESLSFEVPSGNNLLICGPNGCGKSSL 494
Query: 710 LNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL------DP 763
L + + GR+ + L +PQ P + GT+R + +
Sbjct: 495 FRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSED 543
Query: 764 FSEH--SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 821
SD DL + L+ L + R G A V + + S G++Q ++++R +
Sbjct: 544 MKRRGLSDKDLEQILDNVQLTHILERE-GGWSA-VQDWMDVLSGGEKQRIAMARLFYHKP 601
Query: 822 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHR 860
+ +LDE T+AV V + + + RE T+ ++HR
Sbjct: 602 QFAILDECTSAVSVDVEGYMYRLCRE--FGITLFSVSHR 638
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 4e-10
Identities = 66/243 (27%), Positives = 118/243 (48%), Gaps = 35/243 (14%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLISAM-LGELPPVSDASAVIRGT----------V 108
L N++L +P G + ++G +G GK++LI + L E P + S ++ G
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TSGSVIVDGQDLTTLSNSELT 78
Query: 109 AYVPQVSWIF-------NATVRDNILFGSAFEPARYEKA-IDVTSLQHDLDLLPGGDVTE 160
Q+ IF + TV N+ + ++ VT L L L+ GD +
Sbjct: 79 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTEL---LALVGLGDKHD 135
Query: 161 IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGK 218
N+SGGQKQRV++ARA+ SN V + D+ SALD + + + + I L G
Sbjct: 136 --SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRL-GL 192
Query: 219 TRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN--GELFQKLMENAGKM---EE 272
T +L+T+++ + ++ D + ++ G + E+GT ++ ++ L QK + + + E+
Sbjct: 193 TILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQKFIRSTLHLSIPED 252
Query: 273 YVE 275
Y E
Sbjct: 253 YQE 255
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 4e-10
Identities = 59/205 (28%), Positives = 101/205 (49%), Gaps = 18/205 (8%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 740
VL G+ FT+ + ++G GAGKS+++ + IV + G + I G A+
Sbjct: 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAH 84
Query: 741 KILGI--IPQSPVLFSG-TVRFN-LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQV 796
+ LGI +PQ P+LF +V+ N L + + +++ A L LD+
Sbjct: 85 Q-LGIYLVPQEPLLFPNLSVKENILFGLPKRQAS-----MQKMKQLLAALGCQLDLDSSA 138
Query: 797 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD-VRTDALIQKTIRE-EFKSCTM 854
+ V RQ++ + R L+R S+IL+LDE TA++ T+ L + IRE + +
Sbjct: 139 G----SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSR-IRELLAQGVGI 193
Query: 855 LIIAHRLNTIID-CDRILLLDSGRV 878
+ I+H+L I DRI ++ G +
Sbjct: 194 VFISHKLPEIRQLADRISVMRDGTI 218
|
Length = 510 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (148), Expect = 4e-10
Identities = 56/224 (25%), Positives = 108/224 (48%), Gaps = 23/224 (10%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDI--AKF 734
VL ++ P I+G +G GKS++L L R+ ++ G +L+D +I
Sbjct: 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78
Query: 735 GLMDLRKILGIIPQSPVLFSGT----VRFNLDPFSEHSDADLWEALER----AHLKDAIR 786
+++LRK +G++ Q P F + V F + + L E +E+ A L D ++
Sbjct: 79 DVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK 138
Query: 787 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR 846
N + ++G S GQ+Q L ++R L +++++DE +A+D + I++ ++
Sbjct: 139 DN-------LHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQ 191
Query: 847 EEFKSCTMLIIAHRLNTII-DCDRILLLDSGRVLEYDTPEELLS 889
E ++ T+ I+ H + D L +G ++EY E+ S
Sbjct: 192 ELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFS 235
|
Length = 251 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 4e-10
Identities = 66/249 (26%), Positives = 117/249 (46%), Gaps = 33/249 (13%)
Query: 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI-----VEL 719
+I+ V R + + V++ +S I + + +VG +G+GKS ++ R+ V
Sbjct: 7 AIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVY 66
Query: 720 ERGRILIDGFDIAKFGLMDLRKILG----IIPQSPVLFSGTVRFNLDPFSEHS-DADLWE 774
G I G + LR + G +I Q P++ +L+P H+ + L+E
Sbjct: 67 PSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMV-------SLNPL--HTLEKQLYE 117
Query: 775 --ALERAHLKDAIRRNSLG-LD--------AQVSEAGENFSVGQRQLLSLSRALLRRSKI 823
+L R ++A R L LD ++++ S G+RQ + ++ ALL R ++
Sbjct: 118 VLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPEL 177
Query: 824 LVLDEATAAVDVRTDALIQKTIREEFKSCTM--LIIAHRLNTIID-CDRILLLDSGRVLE 880
L+ DE T A+DV A I + +RE + M L I H L+ + DR+ ++ +GR +E
Sbjct: 178 LIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVE 237
Query: 881 YDTPEELLS 889
+ L S
Sbjct: 238 QNRAATLFS 246
|
Length = 529 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 4e-10
Identities = 62/225 (27%), Positives = 109/225 (48%), Gaps = 45/225 (20%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 741
V+ +SFT+ P + +G+VG +G+GKS+ L R++ +G I DG + + R+
Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNL---NRRQ 356
Query: 742 ILGIIPQSPVLFSGTVRFNLDPFSE-----HSDADLWEALE--RAHLKDAIRR------- 787
+L + + V+F DP S + + E L + L A R
Sbjct: 357 LLPVRHRIQVVFQ-------DPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVM 409
Query: 788 NSLGLDAQV-----SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 842
+GLD + +E FS GQRQ ++++RAL+ + +++LDE T+++D +T +Q
Sbjct: 410 EEVGLDPETRHRYPAE----FSGGQRQRIAIARALILKPSLIILDEPTSSLD-KT---VQ 461
Query: 843 KTIREEFKS------CTMLIIAHRLNTIID-CDRILLLDSGRVLE 880
I KS L I+H L+ + C ++++L G V+E
Sbjct: 462 AQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVE 506
|
Length = 529 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 5e-10
Identities = 57/244 (23%), Positives = 114/244 (46%), Gaps = 29/244 (11%)
Query: 41 AISIRNGYFSW-DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 99
+ ++ F++ DSK +P L +I+ IP GS A++G G GK+++ + G L P +
Sbjct: 5 IVEFKHVSFTYPDSK--KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDN 62
Query: 100 ASAVI---------------RGTVAYVPQV--SWIFNATVRDNILFGSAFEPARYEKAID 142
++ I R V V Q + ATV D++ FG + I
Sbjct: 63 PNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIK 122
Query: 143 VTSLQHDLDLLPGGDVTE-IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 201
+ D+L + + I N+SGGQKQRV++A + + I D+ S LD
Sbjct: 123 IVR-----DVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPA 177
Query: 202 VGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGEL 259
Q+ R ++ + + T + +T+ + + D+++++ +G + +G+ ++ + E+
Sbjct: 178 GKEQILKLIRKLKKK-NNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSKVEM 236
Query: 260 FQKL 263
+++
Sbjct: 237 LKEI 240
|
Length = 282 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 5e-10
Identities = 54/221 (24%), Positives = 101/221 (45%), Gaps = 37/221 (16%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS----------------DASAVIR 105
+ +LD+ G + I+G +G GK++L+ + + P + + R
Sbjct: 46 DASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRR 105
Query: 106 GTVAYVPQVSWIF-NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGD 157
++ V Q + + TV +N+ FG A R +A+++ L+ D P
Sbjct: 106 KKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN-- 163
Query: 158 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS- 216
+SGG +QRV +ARA+ ++ D+ + D+ SALD + ++ D + +
Sbjct: 164 ---------ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKL 214
Query: 217 GKTRVLVTNQL-HFLSQVDRIILVHEGMVKEEGTFEDLSNN 256
KT V +T+ L L DRI ++ +G + + GT E++ N
Sbjct: 215 KKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLN 255
|
Length = 386 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 5e-10
Identities = 70/234 (29%), Positives = 104/234 (44%), Gaps = 43/234 (18%)
Query: 31 PNPP-LTSGLPAI--SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI 87
N L G P + ++ Y ER L ++L IP G VA+VG +G GK++L+
Sbjct: 2 MNTARLNQGTPLLLNAVSKRY------GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLL 55
Query: 88 SAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPAR---YEKAIDVT 144
+ G P A ++ GT A R++ F+ AR ++K ID
Sbjct: 56 RLLAGLETP--SAGELLAGTAPL---------AEAREDTRL--MFQDARLLPWKKVIDNV 102
Query: 145 SL-------QHDLDLLPG-GDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS 196
L L L G E +SGGQKQRV++ARA+ + + D+PL
Sbjct: 103 GLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLG 162
Query: 197 ALDAHVGRQVFDRCIRG--ELSGKTRVLVTNQLHFLSQ----VDRIILVHEGMV 244
ALDA + R I + G T +LVT H +S+ DR++L+ EG +
Sbjct: 163 ALDA-LTRIEMQDLIESLWQQHGFTVLLVT---HDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 6e-10
Identities = 69/249 (27%), Positives = 117/249 (46%), Gaps = 39/249 (15%)
Query: 666 IKFEDVVLRYRPELP---PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 722
I F+ V RY+ + P L+ ++ +IP V I+G TG+GKS++L L +++ G
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62
Query: 723 RILIDGFDIAKFG-----LMDLRKILGIIPQSP--VLFSGTVR----FNLDPF--SEHSD 769
+ I G + G L LRK +GI+ Q P LF TV F F SE
Sbjct: 63 TVTI-GERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEE-- 119
Query: 770 ADLWEALERAHLKDAIRRNSLGLDAQVSEAGE-NFSVGQRQLLSLSRALLRRSKILVLDE 828
+A ++A ++ I +GL ++ S GQ + ++++ L ++LVLDE
Sbjct: 120 ----DAKQKA--REMIEL--VGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDE 171
Query: 829 ATAAVDVRTDALIQKTIREEF------KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEY 881
TA +D + +K + E F K T +++ H + D+I+++ G V
Sbjct: 172 PTAGLDPKG----RKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQ 227
Query: 882 DTPEELLSN 890
TP E+ ++
Sbjct: 228 GTPREIFAD 236
|
Length = 290 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 61.5 bits (149), Expect = 6e-10
Identities = 54/189 (28%), Positives = 93/189 (49%), Gaps = 23/189 (12%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDASAVIRGTVAY 110
+++ I G ++G G GK+++ +LG + P V + + R +
Sbjct: 22 DLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGV 81
Query: 111 VPQVSWI-FNATVRDNIL-FGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI 168
VPQ + TVR+N+L FG F + E + SL L DV R +
Sbjct: 82 VPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADV-----RVALL 136
Query: 169 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQL 227
SGG K+R+++ARA+ ++ + I D+P + LD H +++R +R L+ GKT +L T
Sbjct: 137 SGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWER-LRSLLARGKTILLTT--- 192
Query: 228 HFLSQVDRI 236
HF+ + +R+
Sbjct: 193 HFMEEAERL 201
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 6e-10
Identities = 59/237 (24%), Positives = 110/237 (46%), Gaps = 45/237 (18%)
Query: 683 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAKFG-- 735
L+ ++ +IP + ++G +G GKS++L R+ +L G IL +G +I G
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 736 LMDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALER 778
++ LR+ +G++ Q P F ++ N LD E S A LW+
Sbjct: 82 VVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWD---- 137
Query: 779 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 838
+KD + ++L L S GQ+Q L ++R L +++++DE +A+D
Sbjct: 138 -EVKDRLHDSALSL-----------SGGQQQRLCIARTLAVNPEVILMDEPCSALDPIAT 185
Query: 839 ALIQKTIREEFKSCTMLIIAHRLNT---IIDCDRILLLDSGRVLEYDTPEELLSNEG 892
A I+ I + K T++I+ H + + D + L G+++E+D ++ N
Sbjct: 186 AKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYL--GKLIEFDKTTQIFENPH 240
|
Length = 253 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 7e-10
Identities = 49/185 (26%), Positives = 78/185 (42%), Gaps = 28/185 (15%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IR 105
L +N G ++A++G G GK++L+ + G L P S A + R
Sbjct: 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERR 67
Query: 106 GTVAYVPQ--VSWIFNATVRDNILFGS---AFEPARYEKAIDVTSLQHDLDLLPGGDVTE 160
V V Q +F A V ++ FG A E+ + + L +
Sbjct: 68 QRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVR--------EALTAVGASG 119
Query: 161 IGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKT 219
+ ER + +SGG+K+RV++A AV DV + D+P + LD Q+ R G T
Sbjct: 120 LRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMT 179
Query: 220 RVLVT 224
V+ T
Sbjct: 180 VVIST 184
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 7e-10
Identities = 58/214 (27%), Positives = 96/214 (44%), Gaps = 24/214 (11%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG------------- 106
L ++L I G +V ++G G GKT+L+ + G+ P + V G
Sbjct: 21 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGD-PRATSGRIVFDGKDITDWQTAKIMR 79
Query: 107 -TVAYVPQVSWIFN-ATVRDNILFGSAF-EPARYEKAIDVTSLQHDLDLLPGGDVTEIGE 163
VA VP+ +F+ TV +N+ G F E ++++ I +L P I +
Sbjct: 80 EAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWV-----YELFPRLHERRI-Q 133
Query: 164 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLV 223
R +SGG++Q +++ RA+ S + + D+P L + +Q+FD + G T LV
Sbjct: 134 RAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLV 193
Query: 224 -TNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 256
N L DR ++ G V E T + L N
Sbjct: 194 EQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227
|
Length = 237 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 8e-10
Identities = 51/213 (23%), Positives = 91/213 (42%), Gaps = 45/213 (21%)
Query: 63 INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG-TVAYVPQ-----VSW 116
++ + G + ++G G GKT+ + + G L P A + G V P + +
Sbjct: 24 VSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP-DAGFATVDGFDVVKEPAEARRRLGF 82
Query: 117 IFNA-------TVRDNILF--------GSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 161
+ ++ T R+N+ + G AR E+ D ++ LD
Sbjct: 83 VSDSTGLYDRLTARENLEYFAGLYGLKGDELT-ARLEELADRLGMEELLD---------- 131
Query: 162 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKT 219
R S G +Q+V++ARA+ + V + D+P + LD R + + R +R GK
Sbjct: 132 -RRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRAL--GKC 188
Query: 220 RVLVTNQLHFLSQV----DRIILVHEGMVKEEG 248
+ T H + +V DR++++H G V EG
Sbjct: 189 ILFST---HIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 9e-10
Identities = 42/188 (22%), Positives = 81/188 (43%), Gaps = 29/188 (15%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-------------VSDASAVIRGTV 108
+++L + G + A++G G GK++L+ + G P + IR +
Sbjct: 22 DVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGI 81
Query: 109 AYVPQ-VSWIFNATVRDNILFGSA------FEPARYEKAIDVTSLQHDLDLLPGGDVTEI 161
V Q + TV +NI+ G + + I S ++ L + P V ++
Sbjct: 82 GMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADL 141
Query: 162 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSAL-DAHVGRQVFDRCIRGELSGKTR 220
S G++QRV + +A+Y + + I D+P + L ++F+ R GKT
Sbjct: 142 -------SVGEQQRVEILKALYRGARLLILDEPTAVLTPQEA-DELFEILRRLAAEGKTI 193
Query: 221 VLVTNQLH 228
+ +T++L
Sbjct: 194 IFITHKLK 201
|
Length = 501 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (146), Expect = 9e-10
Identities = 59/201 (29%), Positives = 96/201 (47%), Gaps = 34/201 (16%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPP--------------VSDA--- 100
L++++L IP ++A +G +G GK++L+ + +L P + D+
Sbjct: 36 LVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95
Query: 101 SAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 160
S +R V V Q F ++ +NI AF P ++ L D L E
Sbjct: 96 SVKLRRQVGMVFQRPNPFPKSIYENI----AFAPRANGYKGNLDELVED-SLRRAAIWEE 150
Query: 161 IG----ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS 216
+ E+G +SGGQ+QR+ +ARA+ DV + D+P SALD RQV + C+ EL
Sbjct: 151 VKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCL--ELK 208
Query: 217 GK-TRVLVTNQLHFLSQVDRI 236
+ T ++VT H + Q R+
Sbjct: 209 EQYTIIMVT---HNMQQASRV 226
|
Length = 274 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 1e-09
Identities = 67/224 (29%), Positives = 102/224 (45%), Gaps = 45/224 (20%)
Query: 57 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS---------------DAS 101
R L +++L + G +VAI+G G GK++L+ A+ GEL P S
Sbjct: 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAEL 74
Query: 102 AVIRGTVAYVPQVSWI-FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 160
A R A +PQ S + F TV + + G A P +A D + L + D+
Sbjct: 75 ARRR---AVLPQHSSLSFPFTVEEVVAMGRA--PHGLSRAEDDALVAAALAQV---DLAH 126
Query: 161 IGERGV-NISGGQKQRVSMARA---VYSNSD---VFIFDDPLSALD-AH---VGRQVFDR 209
+ R +SGG++QRV +AR ++ + D+P SALD AH V R
Sbjct: 127 LAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQL 186
Query: 210 CIRGELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGT 249
L+ V+V LH L+ DRI+L+H+G + +GT
Sbjct: 187 AHERGLA----VIVV--LHDLNLAARYADRIVLLHQGRLVADGT 224
|
Length = 258 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 1e-09
Identities = 60/201 (29%), Positives = 95/201 (47%), Gaps = 25/201 (12%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELP----------PVSDASAVIRGTVAY 110
++ + G ++G G GKT+ + +LG P PV + R V
Sbjct: 25 GLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84
Query: 111 VPQVSWIF-NATVRDNIL-FGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI 168
VPQ + + TVR+N+L FG F + V L L D ++GE +
Sbjct: 85 VPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKAD-AKVGE----L 139
Query: 169 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQL 227
SGG K+R+++ARA+ ++ DV + D+P + LD +++R +R L GKT +L T
Sbjct: 140 SGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWER-LRSLLARGKTILLTT--- 195
Query: 228 HFLSQVDRIILVHEGMVKEEG 248
HF+ + +R L V EEG
Sbjct: 196 HFMEEAER--LCDRLCVIEEG 214
|
Length = 306 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 1e-09
Identities = 60/227 (26%), Positives = 106/227 (46%), Gaps = 28/227 (12%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV----ELERGRILIDGFDIAKFGLM 737
L +S ++ + V ++G +G GK+ TL RI+ G I G DI + L
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKT----TLLRIIAGLERQTAGTIYQGGRDITR--LP 72
Query: 738 DLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAH-LKDAIRRNSLGLDAQ 795
++ GI+ QS LF TV N+ ++ E ER L D + GL
Sbjct: 73 PQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLV-----GLPGS 127
Query: 796 VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK----- 850
+ S GQ+Q ++L+RAL +L+LDE +A+ DA +++ +R E +
Sbjct: 128 ERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSAL----DARVREHLRTEIRQLQRR 183
Query: 851 -SCTMLIIAH-RLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 895
T +++ H + + DRI++++ G + + TP+E+ + + F
Sbjct: 184 LGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPF 230
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 1e-09
Identities = 66/236 (27%), Positives = 110/236 (46%), Gaps = 51/236 (21%)
Query: 32 NPPLTSGLPAISIRN-GYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTS----- 85
+P +SG I R+ F D +A L ++++DIP + A++G +G GK++
Sbjct: 30 DPAASSGETVIEARDLNVFYGDEQA----LDDVSMDIPENQVTAMIGPSGCGKSTFLRCI 85
Query: 86 -----LISA--MLGEL----PPVSDAS---AVIRGTVAYVPQVSWIFNATVRDNILFG-- 129
LI A + GEL V DA +R + V Q F ++ DN+ +G
Sbjct: 86 NRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLK 145
Query: 130 ----SAFEPARYEKAIDVTSL----QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 181
R E+++ +L + LD G+++SGGQ+QR+ +ARA
Sbjct: 146 IQGYDGDIDERVEESLRRAALWDEVKDQLD-----------SSGLDLSGGQQQRLCIARA 194
Query: 182 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK-TRVLVTNQLHFLSQVDRI 236
+ + +V + D+P SALD ++ D + EL+ + T V+VT H + Q RI
Sbjct: 195 IAPDPEVILMDEPASALDPVATSKIED--LIEELAEEYTVVIVT---HNMQQAARI 245
|
Length = 285 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (145), Expect = 1e-09
Identities = 61/227 (26%), Positives = 104/227 (45%), Gaps = 43/227 (18%)
Query: 39 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPP 96
+PAI + N F +D++ L ++++I + AI+G +G GK++ + + + EL
Sbjct: 5 IPAIKVNNLSFYYDTQK---ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNEL-- 59
Query: 97 VSDASAVIRGTVAYVPQ---------------VSWI------FNATVRDNILFGSAFEPA 135
++ + G V + Q VS + F +V DN+ +G
Sbjct: 60 --ESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGW 117
Query: 136 RYEKAID--VTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 193
R + ID V S D DL +I + +++SGGQ+QR+ +ARA+ V + D+
Sbjct: 118 RPKLEIDDIVESALKDADLWDEIK-HKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDE 176
Query: 194 PLSALDAHVGRQV----FDRCIRGELSGKTRVLVTNQLHFLSQVDRI 236
P LD +V +R EL T V+V++ LH QV R+
Sbjct: 177 PCFGLDPIASMKVESLIQSLRLRSEL---TMVIVSHNLH---QVSRL 217
|
Length = 261 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 1e-09
Identities = 65/221 (29%), Positives = 109/221 (49%), Gaps = 24/221 (10%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 741
V++ LSFTI + G++G GAGKS++ L ++ +RG+I + G + + R
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARL-ARV 77
Query: 742 ILGIIPQSPVL-FSGTVRFNLDPFSEH---SDADLWEALERAHLKDAIRRNSLGLDAQVS 797
+G++PQ L TVR NL F + S ++ + L + R S D +V+
Sbjct: 78 AIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVI--PSLLEFARLESKA-DVRVA 134
Query: 798 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLI 856
S G ++ L+L+RAL+ ++L+LDE T +D LI + +R + T+L+
Sbjct: 135 L----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILL 190
Query: 857 IAH------RLNTIIDCDRILLLDSGRVLEYDTPEELLSNE 891
H RL CDR+ +L+SGR + P L+ +
Sbjct: 191 TTHFMEEAERL-----CDRLCVLESGRKIAEGRPHALIDEQ 226
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 1e-09
Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 29/162 (17%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 741
++ +S T+P + G++G GAGKS++L + I+ G I+ DG + DL K
Sbjct: 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTR---KDLHK 71
Query: 742 ILGIIPQSPVLFSG-TVRFNLD--------PFSEHSDADLWEALERAHLKDAIRRNSLGL 792
I G + +SP L+ T R NL P S + E L L + ++ +
Sbjct: 72 I-GSLIESPPLYENLTARENLKVHTTLLGLPDSR-----IDEVLNIVDLTNTGKKKA--- 122
Query: 793 DAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 834
+ FS+G +Q L ++ ALL K+L+LDE T +D
Sbjct: 123 --------KQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 1e-09
Identities = 57/202 (28%), Positives = 94/202 (46%), Gaps = 40/202 (19%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDI--AKF 734
L +S IP + +G +G GKS++L R+ +L G I +DG +I K
Sbjct: 40 ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99
Query: 735 GLMDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALE 777
+ +LR+ +G++ Q P F ++ N LD E S A LW+
Sbjct: 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWD--- 156
Query: 778 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 837
+KD + N+ GL S GQ+Q L ++RA+ ++L+LDE T+A+D +
Sbjct: 157 --EVKDRLHENAFGL-----------SGGQQQRLVIARAIAIEPEVLLLDEPTSALDPIS 203
Query: 838 DALIQKTIREEFKSCTMLIIAH 859
I++ I E T++I+ H
Sbjct: 204 TLKIEELITELKSKYTIVIVTH 225
|
Length = 272 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 1e-09
Identities = 61/240 (25%), Positives = 112/240 (46%), Gaps = 35/240 (14%)
Query: 63 INLDIPVGSLVAIVGGTGEGKTSLISAM----LGELPPVSDASAV-------------IR 105
++L+I G +VA++G +G GK++L+ + G+ S + IR
Sbjct: 23 VDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIR 82
Query: 106 GTVAYVPQVSWIFNA----TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 161
+ A + FN +V +N+L G+ + + + L +T +
Sbjct: 83 KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQA--LTRV 140
Query: 162 G------ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRG 213
G +R +SGGQ+QRV++ARA+ + V + D+P+++LD R V D R I
Sbjct: 141 GMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDI-N 199
Query: 214 ELSGKTRVLVTNQLHF-LSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEE 272
+ G T V+ +Q+ + L +RI+ + +G V +G+ + N E F L + ++EE
Sbjct: 200 QNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQFDN--ERFDHLYRSINRVEE 257
|
Length = 262 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 61.5 bits (149), Expect = 2e-09
Identities = 60/228 (26%), Positives = 102/228 (44%), Gaps = 31/228 (13%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 740
PVL +SF + + + G TG+GKSS+L + +E G+I G
Sbjct: 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR----------- 488
Query: 741 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERA-HLKDAIRRNSLGLDAQVSEA 799
+ PQ+ + GT++ N+ F D + ++ +A L++ I + E
Sbjct: 489 --ISFSPQTSWIMPGTIKDNI-IFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEG 545
Query: 800 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC------- 852
G S GQR +SL+RA+ + + + +LD +DV T+ +E F+SC
Sbjct: 546 GITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTE-------KEIFESCLCKLMSN 598
Query: 853 -TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 899
T +++ +L + D+ILLL G Y T E L + FS ++
Sbjct: 599 KTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSE-LQAKRPDFSSLL 645
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 2e-09
Identities = 56/225 (24%), Positives = 101/225 (44%), Gaps = 31/225 (13%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 740
PVL ++ I + + I G TG+GK+S+L + +E G+I G
Sbjct: 51 PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR----------- 99
Query: 741 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERA-HLKDAIRRNSLGLDAQVSEA 799
+ Q + GT++ N+ F D ++++ +A L++ I + + + E
Sbjct: 100 --ISFSSQFSWIMPGTIKENI-IFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEG 156
Query: 800 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC------- 852
G S GQR +SL+RA+ + + + +LD +DV T+ +E F+SC
Sbjct: 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTE-------KEIFESCVCKLMAN 209
Query: 853 -TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFS 896
T +++ ++ + D+IL+L G Y T E L + FS
Sbjct: 210 KTRILVTSKMEHLKKADKILILHEGSSYFYGTFSE-LQSLRPDFS 253
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 2e-09
Identities = 65/242 (26%), Positives = 106/242 (43%), Gaps = 38/242 (15%)
Query: 43 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA------------M 90
S++N + SK L +INLDI + A +G +G GK++ + +
Sbjct: 7 SVKNLNLWYGSKQ---ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKV 63
Query: 91 LGEL-----PPVSDASAVI--RGTVAYVPQVSWIFNATVRDNILFGSAFEP-ARYEKAID 142
GEL S + V+ R V V Q F ++ DN+ +G A+ +K +D
Sbjct: 64 KGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLD 123
Query: 143 VTSLQHDLDLLPGGDVTEIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSAL 198
+ L G E+G+R +SGGQ+QR+ +ARA+ + + D+P SAL
Sbjct: 124 EIV---EKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSAL 180
Query: 199 DAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLS 254
D V V + I+ T ++VT H + Q DR+ G + E T +++
Sbjct: 181 DP-VATNVIENLIQELKKNFTIIVVT---HSMKQAKKVSDRVAFFQSGRIVEYNTTQEIF 236
Query: 255 NN 256
N
Sbjct: 237 KN 238
|
Length = 251 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.2 bits (143), Expect = 2e-09
Identities = 62/228 (27%), Positives = 101/228 (44%), Gaps = 47/228 (20%)
Query: 39 LPAISIRN-GYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSL---ISAMLGEL 94
P I I N + + KA + N+ + I + AI+G +G GKT+L I+ M +
Sbjct: 1 EPIIEIENFSAYYGEKKAVK----NVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHI 56
Query: 95 P-----------------PVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPAR- 136
P P D + R V V Q F ++ DN+ FG +
Sbjct: 57 PGFRVEGKIYFKGQDIYDPQLDVT-EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKS 115
Query: 137 -------YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 189
E+++ +L ++ +E+ + G +SGGQ+QR+ +ARA+ +V
Sbjct: 116 KHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQQRLCIARALAVEPEVI 168
Query: 190 IFDDPLSALDAHVGRQVFDRCIRGELSGK-TRVLVTNQLHFLSQVDRI 236
+ D+P SALD + Q ++ + ELS T V+VT H + Q RI
Sbjct: 169 LLDEPTSALDP-IATQRIEKLLE-ELSENYTIVIVT---HNIGQAIRI 211
|
Length = 250 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 2e-09
Identities = 41/189 (21%), Positives = 75/189 (39%), Gaps = 41/189 (21%)
Query: 57 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI--RGTVAYVPQV 114
R L +++ +I G + I G +G GK+SL A L L P + + ++PQ
Sbjct: 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRA-LAGLWPWGSGRIGMPEGEDLLFLPQR 72
Query: 115 SWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 174
++ T+R+ +++ P DV +SGG++Q
Sbjct: 73 PYLPLGTLREQLIY-------------------------PWDDV---------LSGGEQQ 98
Query: 175 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVD 234
R++ AR + D+ SALD +++ + T + V ++ D
Sbjct: 99 RLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLL-KELGI--TVISVGHRPSLWKFHD 155
Query: 235 RII-LVHEG 242
R++ L EG
Sbjct: 156 RVLDLDGEG 164
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 2e-09
Identities = 69/252 (27%), Positives = 115/252 (45%), Gaps = 51/252 (20%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER-GRILIDG--FDIAKF---- 734
L ++ P + + ++G +GAGKSS+L L ++E+ R G + I G FD +K
Sbjct: 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVL-NLLEMPRSGTLNIAGNHFDFSKTPSDK 75
Query: 735 GLMDLRKILGIIPQS----PVLFSGTVRFNL----------DPFSEHSDADLWEALERAH 780
+ +LR+ +G++ Q P L TV+ NL + A+ + LER
Sbjct: 76 AIRELRRNVGMVFQQYNLWPHL---TVQQNLIEAPCRVLGLSKDQALARAE--KLLERLR 130
Query: 781 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 840
LK R L L S GQ+Q ++++RAL+ ++L+ DE TAA+D A
Sbjct: 131 LKPYADRFPLHL-----------SGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQ 179
Query: 841 IQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 898
I IRE ++ T +I+ H + R++ +++G ++E S F+
Sbjct: 180 IVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGD--------ASCFT-- 229
Query: 899 VQSTGAANAQYL 910
Q A YL
Sbjct: 230 -QPQTEAFKNYL 240
|
Length = 242 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 2e-09
Identities = 62/240 (25%), Positives = 108/240 (45%), Gaps = 34/240 (14%)
Query: 36 TSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP 95
T+ P + R+ + L I+ + G + A++GG G GK++L+ + G +P
Sbjct: 6 TTAPPLLCARS---ISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP 62
Query: 96 PVSDASAVIRGTVAY---------------VPQVSWIF-NATVRDNILFGSAFEPARYEK 139
P D+ + G VPQ +F N +V++NILFG A +K
Sbjct: 63 P--DSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQK 120
Query: 140 AID-VTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSAL 198
+ +L LDL E+ +R Q V + R + +S + I D+P ++L
Sbjct: 121 MKQLLAALGCQLDLDSSAGSLEVADR---------QIVEILRGLMRDSRILILDEPTASL 171
Query: 199 DAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 256
++F R IR L+ G V ++++L + Q+ DRI ++ +G + G DLS +
Sbjct: 172 TPAETERLFSR-IRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTD 230
|
Length = 510 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 2e-09
Identities = 53/208 (25%), Positives = 91/208 (43%), Gaps = 42/208 (20%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQ------ 113
L +NL I G ++++G +G GK++L++ + G P + ++ G P
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP-TSGGVILEGKQITEPGPDRMVV 59
Query: 114 ------VSWIFNATVRDNILFG------SAFEPAR---YEKAIDVTSLQHDLDLLPGGDV 158
+ W+ TVR+NI + R E+ I + L D PG
Sbjct: 60 FQNYSLLPWL---TVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPG--- 113
Query: 159 TEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-GELSG 217
+SGG KQRV++ARA+ V + D+P ALDA + + ++ E
Sbjct: 114 --------QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHR 165
Query: 218 KTRVLVTNQLH---FLSQVDRIILVHEG 242
T ++VT+ + LS DR++++ G
Sbjct: 166 VTVLMVTHDVDEALLLS--DRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 2e-09
Identities = 62/237 (26%), Positives = 109/237 (45%), Gaps = 48/237 (20%)
Query: 686 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAKFGL--MD 738
++ I P +G +G GKS++L TL R+ E+ G +L+DG D+ G+ +
Sbjct: 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82
Query: 739 LRKILGIIPQSPVLFS---------GTVRFN-------LDPFSEHS--DADLWEALERAH 780
+R+ +G++ Q P F ++ N LD E S A+LW
Sbjct: 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWN-----E 137
Query: 781 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 840
+KD + + GL S GQ+Q L ++RA+ +L++DE +A+D +
Sbjct: 138 VKDRLDKPGGGL-----------SGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLA 186
Query: 841 IQKTIREEFKSCTMLIIAHRLNT---IIDCDRILLLDS----GRVLEYDTPEELLSN 890
I+ I E + T++I+ H + + D L++ GR++E D E++ SN
Sbjct: 187 IEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIFSN 243
|
Length = 258 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.2 bits (143), Expect = 2e-09
Identities = 55/198 (27%), Positives = 95/198 (47%), Gaps = 26/198 (13%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLISA---MLGELPPVSDASAVI------------ 104
L NINL IP + AI+G +G GK++ I M+ +P V +
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 105 ----RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 160
R + V Q F ++ DN+ +G + +K + + D+ +V +
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKD 147
Query: 161 -IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK- 218
+ + +++SGGQ+QR+ +ARA+ +N DV + D+P SALD R++ + + +L K
Sbjct: 148 RLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELIL--KLKEKY 205
Query: 219 TRVLVTNQLHFLSQVDRI 236
T V+VT H + Q R+
Sbjct: 206 TIVIVT---HNMQQAARV 220
|
Length = 259 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 3e-09
Identities = 60/231 (25%), Positives = 104/231 (45%), Gaps = 31/231 (13%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 740
+ +SF + + VGI G G G+S ++ + + + GRIL++G D+ R
Sbjct: 272 TAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRER 331
Query: 741 KILGI--IPQSP-----VLFSGTVRFNL-------DPFSEHSDADLWEALERAHLKDAIR 786
+ LG+ +P+ VL ++ NL PFS D A+ R ++ I
Sbjct: 332 RRLGLAYVPEDRHGHGLVL-DLSLAENLVLGRHDKKPFSRGGFLD-RRAI-RKFARELIE 388
Query: 787 RNSL---GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 843
+ DA + S G +Q L L+R L RR +L+ + T +DV I +
Sbjct: 389 EFDVRAPSPDAPAR----SLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHE 444
Query: 844 TIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRVL-----EYDTPEEL 887
+ E + +L+I+ L+ I++ DRI ++ GR++ E T EE+
Sbjct: 445 RLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEEATREEI 495
|
Length = 501 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 3e-09
Identities = 53/198 (26%), Positives = 95/198 (47%), Gaps = 23/198 (11%)
Query: 53 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDAS 101
S ++ + ++ + G ++G G GK+++ +LG P V +
Sbjct: 50 SYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA 109
Query: 102 AVIRGTVAYVPQVSWI-FNATVRDNIL-FGSAFEPARYEKAIDVTSLQHDLDLLPGGDVT 159
+ R + VPQ + TVR+N+L FG F + E + SL L D
Sbjct: 110 RLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADA- 168
Query: 160 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GK 218
R ++SGG K+R+++ARA+ ++ + I D+P + LD H +++R +R L+ GK
Sbjct: 169 ----RVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWER-LRSLLARGK 223
Query: 219 TRVLVTNQLHFLSQVDRI 236
T +L T HF+ + +R+
Sbjct: 224 TILLTT---HFMEEAERL 238
|
Length = 340 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 3e-09
Identities = 64/252 (25%), Positives = 114/252 (45%), Gaps = 44/252 (17%)
Query: 41 AISIRNGYFSW--DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS 98
I + + +F + +KA L ++L IP GS A++G G GK++L+ + G P
Sbjct: 4 IIEVEDLHFRYKDGTKA----LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQR 59
Query: 99 DASAV------------IRGTVAYVPQV--SWIFNATVRDNILFG------SAFE-PARY 137
V +R V V Q +F++TV D++ FG E R
Sbjct: 60 GRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRV 119
Query: 138 EKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSA 197
E+A+ + D P ++S GQK+RV++A + + DV + D+P++
Sbjct: 120 EEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAY 168
Query: 198 LDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 256
LD + + R GKT ++ T+ + ++ D++I++ EG V EG L++
Sbjct: 169 LDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTD- 227
Query: 257 GELFQKLMENAG 268
+ ++E AG
Sbjct: 228 ----EDIVEQAG 235
|
Length = 274 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 3e-09
Identities = 52/217 (23%), Positives = 95/217 (43%), Gaps = 29/217 (13%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 740
L +S TI + V ++G +G GK+++LN + V RG I ++G I G
Sbjct: 19 SALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAER-- 76
Query: 741 KILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRR---NSLGLDAQV 796
G++ Q+ L V N+ L+ ++ A RR + + +
Sbjct: 77 ---GVVFQNEALLPWLNVIDNVA-----------FGLQLRGIEKAQRREIAHQMLALVGL 122
Query: 797 SEAGENF----SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC 852
A + S G RQ + ++RAL ++L+LDE A+D T +Q+ + + ++
Sbjct: 123 EGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQET 182
Query: 853 --TMLIIAHRLN-TIIDCDRILLLDS--GRVLEYDTP 884
+L+I H + + R+++L GRV+E
Sbjct: 183 GKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL 219
|
Length = 259 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 3e-09
Identities = 48/178 (26%), Positives = 72/178 (40%), Gaps = 48/178 (26%)
Query: 56 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA---MLGELPPVSDASAVI-------- 104
E L NINLDI + AI+G +G GK++ I M+ +P V ++
Sbjct: 36 EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFD 95
Query: 105 --------RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGG 156
R V V Q F ++ DN+ +G + +K +D
Sbjct: 96 KSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLD-------------- 141
Query: 157 DVTEIGERGVNI---------------SGGQKQRVSMARAVYSNSDVFIFDDPLSALD 199
++ E RG I SGGQ+QR+ +AR + DV + D+P SALD
Sbjct: 142 EIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.8 bits (142), Expect = 3e-09
Identities = 51/222 (22%), Positives = 106/222 (47%), Gaps = 19/222 (8%)
Query: 683 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKFG 735
L G+ ++ ++G +G GKS+ L TL R+ +L G + + G +I
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 736 LMDLRKILGIIPQSPVLFSGTVRFN------LDPFSEHSDADLWEALERAHLKDAIRRNS 789
++ LRK +G++ Q P F ++ N L + + D EA+E + + AI
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLD--EAVETSLKQAAIWDE- 137
Query: 790 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF 849
+ + E+ + S GQ+Q + ++R L + +++LDE T+A+D + I+ + E
Sbjct: 138 --VKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELR 195
Query: 850 KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890
T++++ H ++ D+ +G ++E+ +++ N
Sbjct: 196 DQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLN 237
|
Length = 252 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (144), Expect = 4e-09
Identities = 61/216 (28%), Positives = 103/216 (47%), Gaps = 31/216 (14%)
Query: 64 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP--------------VSDAS--AVIRGT 107
+L I G + I+G +G GK++++ + + P +SDA V R
Sbjct: 48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK 107
Query: 108 VAYVPQ-VSWIFNATVRDNILFGSAFE--PA--RYEKAIDVTSLQHDLDLLPGGDVTEIG 162
+A V Q + + + TV DN FG A R EKA+D Q L+ E+
Sbjct: 108 IAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALR-QVGLENYAHSYPDEL- 165
Query: 163 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRV 221
SGG +QRV +ARA+ N D+ + D+ SALD + ++ D ++ + +T V
Sbjct: 166 ------SGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIV 219
Query: 222 LVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 256
+++ L ++ DRI ++ G V + GT +++ NN
Sbjct: 220 FISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255
|
Length = 400 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 4e-09
Identities = 48/169 (28%), Positives = 70/169 (41%), Gaps = 23/169 (13%)
Query: 55 AERPTLLNINLDIPVGSLVAIVGGTGEGKT-------SLISAMLGEL----PPVSDASAV 103
+ L NI+ + G I G +G GK+ SLIS G L +S
Sbjct: 18 GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPE 77
Query: 104 I-RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDL--LPGGDVTE 160
I R V+Y Q +F TV DN++F + D DL+ LP
Sbjct: 78 IYRQQVSYCAQTPTLFGDTVYDNLIFPWQIR----NQQPDPAIFLDDLERFALP----DT 129
Query: 161 IGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 208
I + + +SGG+KQR+S+ R + V + D+ SALD V +
Sbjct: 130 ILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNE 178
|
Length = 225 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 4e-09
Identities = 51/199 (25%), Positives = 87/199 (43%), Gaps = 45/199 (22%)
Query: 31 PNPPLTSGLPAISIRNGYFSW-DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA 89
S IS++N S+ +A + N+ DIP G + A++G +G GK++++ +
Sbjct: 3 KTNKKISKNIIISLQNVTISYGTFEAVK----NVFCDIPRGKVTALIGPSGCGKSTVLRS 58
Query: 90 ---MLGELPPVSDASAVI-RGTVAYVPQVSWI---------------FNATVRDNILFGS 130
M + S V+ GT Y P+V + F ++ +NI FG
Sbjct: 59 LNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFG- 117
Query: 131 AFEPARYEKAIDVTSLQHDLDLLPGGDVTE----------IGERGVNISGGQKQRVSMAR 180
AR + D+D L + + + E G ++SGGQ+QR+ +AR
Sbjct: 118 ----AR------INGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIAR 167
Query: 181 AVYSNSDVFIFDDPLSALD 199
+ +V + D+P SALD
Sbjct: 168 TIAIEPEVILMDEPCSALD 186
|
Length = 269 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (141), Expect = 4e-09
Identities = 58/233 (24%), Positives = 108/233 (46%), Gaps = 41/233 (17%)
Query: 683 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDI--AKFG 735
L ++ +IP ++ I+G +G GKS+ + TL ++++ G + +G +I K
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 736 LMDLRKILGII-------PQS--------PVLFSGTVRFNLDPFSEHS--DADLWEALER 778
L++LRK +G++ PQS P + + L E S D LW+
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWD---- 143
Query: 779 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 838
+KD + +L L S GQ+Q L ++RAL +L++DE T+A+D +
Sbjct: 144 -EVKDRLHTQALSL-----------SGGQQQRLCIARALATNPDVLLMDEPTSALDPVST 191
Query: 839 ALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890
I++ I + + T++I+ H + D+ G ++E + ++ SN
Sbjct: 192 RKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSN 244
|
Length = 259 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 4e-09
Identities = 61/234 (26%), Positives = 108/234 (46%), Gaps = 26/234 (11%)
Query: 685 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LMDLRK 741
G++ + + +G+VG +G GKS+ + +V+ G + G D+ +R
Sbjct: 39 GVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRS 98
Query: 742 ILGIIPQSPVLFSGTVRFNL-----DPFSEHSDADLWEALERAHLKDAIRRNSLG---LD 793
+ +I Q P L S R + +P + L R +KD ++ L L
Sbjct: 99 DIQMIFQDP-LASLNPRMTIGEIIAEPLRTY-----HPKLSRQEVKDRVKAMMLKVGLLP 152
Query: 794 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA----LIQKTIREEF 849
++ FS GQ Q + ++RAL+ K+++ DE +A+DV A L+Q+ RE
Sbjct: 153 NLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMG 212
Query: 850 KSCTMLIIAHRLNTI--IDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 901
S ++ IAH L + I DR+L++ G +E T +E+ N ++K + S
Sbjct: 213 LS--LIFIAHDLAVVKHIS-DRVLVMYLGHAVELGTYDEVYHNPLHPYTKALMS 263
|
Length = 331 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 4e-09
Identities = 61/206 (29%), Positives = 96/206 (46%), Gaps = 42/206 (20%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 741
VL +S + P + ++G GAGKS+++ + +V + G I +G LR
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG---------KLR- 68
Query: 742 ILGIIPQS----PVLFSGTVRF-NLDPFSEHSDADLWEALER---AHLKDAIRRNSLGLD 793
+G +PQ L RF L P ++ D+ AL+R HL DA
Sbjct: 69 -IGYVPQKLYLDTTLPLTVNRFLRLRPGTK--KEDILPALKRVQAGHLIDA--------- 116
Query: 794 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA----LIQKTIREEF 849
+ S G+ Q + L+RALL R ++LVLDE T VDV LI + +R E
Sbjct: 117 -----PMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQ-LRREL 170
Query: 850 KSCTMLIIAHRLNTII-DCDRILLLD 874
C +L+++H L+ ++ D +L L+
Sbjct: 171 -DCAVLMVSHDLHLVMAKTDEVLCLN 195
|
Length = 251 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 5e-09
Identities = 56/243 (23%), Positives = 116/243 (47%), Gaps = 27/243 (11%)
Query: 665 SIKFEDVVLRYRPELP---PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 721
+I+F++V Y+ P +H ++ IVG+TG+GKS+++ + +++
Sbjct: 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTT 61
Query: 722 GRILIDGFDIA-----KFGLMDLRKILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWE 774
G + +D I K+ + +RK +G++ Q P LF TV + ++ +L E
Sbjct: 62 GTVTVDDITITHKTKDKY-IRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDE 120
Query: 775 ALERAH---LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 831
AH + R+ + S++ S GQ + +++ L I+VLDE TA
Sbjct: 121 VKNYAHRLLMDLGFSRDVM------SQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTA 174
Query: 832 AVDVRTD----ALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 886
+D ++ L++ +E K T+++++H +N + D ++++ G ++ +P+E
Sbjct: 175 GLDPQSKRQVMRLLKSLQTDENK--TIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKE 232
Query: 887 LLS 889
L
Sbjct: 233 LFK 235
|
Length = 286 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 5e-09
Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 17/160 (10%)
Query: 63 INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI--RGTVAYVPQVSWIFNA 120
++ ++P G+ + I G G GK+SL +LGEL PV +G + YVPQ ++
Sbjct: 471 LSFEVPSGNNLLICGPNGCGKSSLFR-ILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLG 529
Query: 121 TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN----------ISG 170
T+RD I++ + E + + + L+ LD + +T I ER +SG
Sbjct: 530 TLRDQIIYPDSSEDMK-RRGLSDKDLEQILDNV---QLTHILEREGGWSAVQDWMDVLSG 585
Query: 171 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 210
G+KQR++MAR Y I D+ SA+ V ++ C
Sbjct: 586 GEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLC 625
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 6e-09
Identities = 56/223 (25%), Positives = 109/223 (48%), Gaps = 26/223 (11%)
Query: 686 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745
+S TI + ++G +G GKS++L L + G+I++DG D++ + ++ + +
Sbjct: 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSH--VPPYQRPINM 95
Query: 746 IPQSPVLFSG-TVRFNLDPFSEHSD--------ADLWEALERAHLKDAIRRNSLGLDAQV 796
+ QS LF TV N+ F D + + E L H+++ +R L
Sbjct: 96 MFQSYALFPHMTVEQNI-AFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQL---- 150
Query: 797 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKSCTM 854
S GQRQ ++L+R+L +R K+L+LDE A+D + +Q + + E T
Sbjct: 151 -------SGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTC 203
Query: 855 LIIAH-RLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFS 896
+++ H + + RI +++ G+ ++ PEE+ + + +S
Sbjct: 204 VMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYS 246
|
Length = 377 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 7e-09
Identities = 62/237 (26%), Positives = 107/237 (45%), Gaps = 30/237 (12%)
Query: 48 YFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----------- 96
Y S + E+ L ++NL++ G + I+G G GK+++ M L P
Sbjct: 14 YESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLD 73
Query: 97 VSDASAV--IRGTVAYVPQV--SWIFNATVRDNILFGS---AFEPARYEKAIDVTSLQHD 149
SD + IR V Q + I V +++ FG P + +D
Sbjct: 74 TSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVD------- 126
Query: 150 LDLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 208
+ L + E + +SGGQKQRV++A + + IFD+P + LD R+V +
Sbjct: 127 -ESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVN 185
Query: 209 RCIR--GELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 263
I+ + G T +L+T+ + + DRII++ G V EGT +++ E+ +K+
Sbjct: 186 -TIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKEVEMMKKI 241
|
Length = 280 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 7e-09
Identities = 42/209 (20%), Positives = 80/209 (38%), Gaps = 74/209 (35%)
Query: 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 101
I + N ++ + L +I+L I G + +VG G GK++L+ + GEL P
Sbjct: 1 IELENLSKTYG---GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDE--- 54
Query: 102 AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 161
G V +GS + +E+
Sbjct: 55 ----GIVT------------------WGSTVKIGYFEQ---------------------- 70
Query: 162 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV-------FDRCIRGE 214
+SGG+K R+++A+ + N ++ + D+P + LD + + +
Sbjct: 71 ------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLE-SIEALEEALKEYPGTV--- 120
Query: 215 LSGKTRVLVTNQLHFLSQV-DRIILVHEG 242
+LV++ +FL QV +II + +G
Sbjct: 121 ------ILVSHDRYFLDQVATKIIELEDG 143
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (139), Expect = 7e-09
Identities = 59/262 (22%), Positives = 116/262 (44%), Gaps = 28/262 (10%)
Query: 666 IKFEDVVLRYRPELP---PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 722
IKFE V Y+P P L + + ++G TG+GKS++L L +++ G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 723 RILIDGFDIAKFG----LMDLRKILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWEAL 776
++ + ++ + +RK +G++ Q P LF TV ++ +
Sbjct: 62 KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDV----AFGPQNFGIPK 117
Query: 777 ERAHLKDAIRRNSLGLDAQVSEAGE-NFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 835
E+A A + +GL + E S GQ + ++++ L ++LVLDE TA +D
Sbjct: 118 EKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDP 177
Query: 836 RTDALIQKTIREEFKSC-TMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN--- 890
+ + + +S T++++ H ++ + D D + LL+ G ++ TP ++
Sbjct: 178 KARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVDF 237
Query: 891 ---------EGSSFSKMVQSTG 903
+ + F+ +Q TG
Sbjct: 238 LKAHELGVPKATHFADQLQKTG 259
|
Length = 288 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 7e-09
Identities = 58/241 (24%), Positives = 108/241 (44%), Gaps = 40/241 (16%)
Query: 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--- 98
+ +R F+ + R NI+L +P G + AI+G +G GKT+L+ + G++ P
Sbjct: 8 VDMRGVSFT---RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64
Query: 99 -----DASAVIRGTVAYV-PQVSWIFNA-------TVRDNILFGSAFEPARYEKAIDVTS 145
+ A+ R + V ++S +F + V DN+ + E + + ++
Sbjct: 65 LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAY-PLREHTQLPAPLLHST 123
Query: 146 LQHDLDLLPGGDVTEIGERGV------NISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 199
+ L+ +G RG +SGG +R ++ARA+ D+ +FD+P D
Sbjct: 124 VMMKLE--------AVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQD 175
Query: 200 AHVGRQVFDRCIRGELS---GKTRVLVTNQL-HFLSQVDRIILVHEGMVKEEGTFEDLSN 255
+ V + I EL+ G T V+V++ + LS D +V + + G+ + L
Sbjct: 176 P-ITMGVLVKLI-SELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233
Query: 256 N 256
N
Sbjct: 234 N 234
|
Length = 269 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 8e-09
Identities = 57/220 (25%), Positives = 106/220 (48%), Gaps = 33/220 (15%)
Query: 683 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG--LMDLR 740
L G++ TI + + ++G +G GKS++LN LI G G +++ +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLN-------------LISGLAQPTSGGVILEGK 47
Query: 741 KILGIIPQSPVLFSG-------TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLD 793
+I P V+F TVR N+ + DL ++ RA +++ I +GL
Sbjct: 48 QITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHI--ALVGLT 105
Query: 794 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKS 851
+ S G +Q ++++RAL R K+L+LDE A+D T +Q+ + + E
Sbjct: 106 EAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHR 165
Query: 852 CTMLIIAHRLN-TIIDCDRILLLDS------GRVLEYDTP 884
T+L++ H ++ ++ DR+++L + G++LE P
Sbjct: 166 VTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVPFP 205
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (139), Expect = 8e-09
Identities = 60/217 (27%), Positives = 98/217 (45%), Gaps = 30/217 (13%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------- 103
L +I+L++ GS A++G TG GK++L+ + G L P V
Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81
Query: 104 IRGTVAYVPQV--SWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 161
+R V V Q S +F TV ++ FG EKA + + L+++ G E
Sbjct: 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAA--EKLEMV--GLADEF 137
Query: 162 GERG-VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTR 220
E+ +SGGQ +RV++A + +V + D+P + LD ++ SG+T
Sbjct: 138 WEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTV 197
Query: 221 VLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDL 253
VLVT H + V D + L+ +G + GT D+
Sbjct: 198 VLVT---HLMDDVADYADYVYLLEKGHIISCGTPSDV 231
|
Length = 288 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 8e-09
Identities = 62/247 (25%), Positives = 105/247 (42%), Gaps = 42/247 (17%)
Query: 56 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------ 103
E L ++NL I GS A +G TG GK++++ + G P + V
Sbjct: 19 EGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNK 78
Query: 104 ----IRGTVAYVPQV--SWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGD 157
IR V V Q S +F TV ++ FG E+A +L + L G
Sbjct: 79 DIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEA---EALAREKLALVGIS 135
Query: 158 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 217
+ + +SGGQ +RV++A + + + D+P + LD +++ + SG
Sbjct: 136 ESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSG 195
Query: 218 KTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEY 273
T VLVT H + V D + ++ +G + G +D +FQ + ++
Sbjct: 196 MTIVLVT---HLMDDVANYADFVYVLEKGKLVLSGKPKD------IFQDV--------DF 238
Query: 274 VEEKEDG 280
+EEK+ G
Sbjct: 239 LEEKQLG 245
|
Length = 280 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 8e-09
Identities = 65/228 (28%), Positives = 106/228 (46%), Gaps = 29/228 (12%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
I+FE V Y L G++F + P + + G +GAGKS++L + I G+I
Sbjct: 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIW 60
Query: 726 IDGFDIAKFGLMD---LRKILGIIPQS-PVLFSGTVRFNLD-PFSEHSDADLWEALERAH 780
G DI + + LR+ +G+I Q +L TV N+ P + A
Sbjct: 61 FSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPL----------IIAGAS 110
Query: 781 LKDAIRRNSLGLD-AQVSEAGENFSV----GQRQLLSLSRALLRRSKILVLDEATAAVDV 835
D RR S LD + + +NF + G++Q + ++RA++ + +L+ DE T +D
Sbjct: 111 GDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLD- 169
Query: 836 RTDALIQKTIR--EEFK--SCTMLIIAHRLNTIIDCD-RILLLDSGRV 878
DAL + +R EEF T+L+ H + I R+L L G +
Sbjct: 170 --DALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHL 215
|
Length = 222 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 8e-09
Identities = 67/235 (28%), Positives = 117/235 (49%), Gaps = 24/235 (10%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI-VELER---GRILIDGFDIAKF--- 734
VL+ +S ++ + V ++GR+G GKS TL R+ V LE G + G +AK
Sbjct: 27 VLNNVSLSLKSGETVALLGRSGCGKS----TLARLLVGLESPSQGNVSWRGEPLAKLNRA 82
Query: 735 GLMDLRKILGIIPQ---SPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLG 791
R+ + ++ Q S V TVR + H L +A ER + R ++
Sbjct: 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL-LSLDKA-ERLARASEMLR-AVD 139
Query: 792 LDAQV-SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA-LIQ--KTIRE 847
LD V + S GQ Q + L+RAL K+L+LDEA + +D+ A +I+ K +++
Sbjct: 140 LDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQ 199
Query: 848 EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 901
+F + L I H L + C R++++D+G+++E + L+ S +++Q+
Sbjct: 200 QFGT-ACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKLTFS-SPAGRVLQN 252
|
Length = 268 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 9e-09
Identities = 50/218 (22%), Positives = 97/218 (44%), Gaps = 12/218 (5%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 741
V L+ IP I+G G GKS++L TL R++ G + +DG I + ++ +
Sbjct: 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81
Query: 742 ILGIIPQSPVLFSGTVRFNLDPFSEHSDADL---WEALERAHLKDAIRRNSLGLDAQVSE 798
+G++ Q+ L + L W + + A++ + G+ +
Sbjct: 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQ--ATGITHLADQ 139
Query: 799 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD----ALIQKTIREEFKSCTM 854
+ + S GQRQ ++ L + + I++LDE T +D+ L+ + RE K T+
Sbjct: 140 SVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE--KGYTL 197
Query: 855 LIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 891
+ H LN ++ L G+++ P+E+++ E
Sbjct: 198 AAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAE 235
|
Length = 265 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (143), Expect = 1e-08
Identities = 42/160 (26%), Positives = 85/160 (53%), Gaps = 13/160 (8%)
Query: 104 IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE---KAIDVTSLQHDLDLLPGGDVTE 160
+R + V Q +FN ++ +NI FG E A E +A ++ ++ LP T
Sbjct: 1294 LRNLFSIVSQEPMLFNMSIYENIKFGK--EDATREDVKRACKFAAIDEFIESLPNKYDTN 1351
Query: 161 IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG--ELSGK 218
+G G ++SGGQKQR+++ARA+ + + D+ S+LD++ ++ ++ I + + K
Sbjct: 1352 VGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSN-SEKLIEKTIVDIKDKADK 1410
Query: 219 TRVLVTNQLHFLSQVDRIILVHE-----GMVKEEGTFEDL 253
T + + +++ + + D+I++ + V+ GT E+L
Sbjct: 1411 TIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEEL 1450
|
Length = 1466 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 1e-08
Identities = 62/269 (23%), Positives = 122/269 (45%), Gaps = 56/269 (20%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE--RGR 723
I+ +++ ++ + VL +SFTI + +GI+GR+GAGKS +++ L + + E GR
Sbjct: 1 IEVKNLTKKF--DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGR 58
Query: 724 IL---------------------------------IDGFDIAKFGLMDLRKILGIIPQSP 750
I+ +D ++++ +RK + I+ Q
Sbjct: 59 IIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRT 118
Query: 751 VLFSGTVRFNLDPFSEHSDADLWEALERAHL--KDAIRR-----NSLGLDAQVSEAGENF 803
G LD ++ EALE K+A+ R + L +++ +
Sbjct: 119 FALYGDDTV-LD--------NVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDL 169
Query: 804 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS--CTMLIIAHRL 861
S G++Q + L+R L + + + DE T +D +T L+ + E K+ +M++ +H
Sbjct: 170 SGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWP 229
Query: 862 NTIID-CDRILLLDSGRVLEYDTPEELLS 889
I D D+ + L++G + E TP+E+++
Sbjct: 230 EVIEDLSDKAIWLENGEIKEEGTPDEVVA 258
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 1e-08
Identities = 55/195 (28%), Positives = 96/195 (49%), Gaps = 23/195 (11%)
Query: 75 IVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-VAYVP----QVSWIFNA-------TV 122
++G +G GKT+L+ +L S ++ G V VP ++ +F + TV
Sbjct: 1 LLGPSGCGKTTLLR-LLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTV 59
Query: 123 RDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERG-VNISGGQKQRVSMARA 181
+N+ F + K L+ L + E +R +SGGQ+QRV++ARA
Sbjct: 60 EENVAF-----GLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARA 114
Query: 182 VYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVT-NQLHFLSQVDRIIL 238
+ + + D+PLSALD + Q+ + I+ +L G T V VT +Q ++ DRI +
Sbjct: 115 LVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL-GITFVFVTHDQEEAMTMSDRIAI 173
Query: 239 VHEGMVKEEGTFEDL 253
+ +G + + GT E++
Sbjct: 174 MRKGKIAQIGTPEEI 188
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 1e-08
Identities = 56/223 (25%), Positives = 100/223 (44%), Gaps = 37/223 (16%)
Query: 70 GSLVAIVGGTGEGKTSLISAMLGELPPVS-------------DASA---VIR-----GTV 108
G +AI+G G GK++L + G + P S D S IR
Sbjct: 39 GQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNT 98
Query: 109 AYVP--QVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV 166
+ P ++ I + +R N R ++ + + + LLP D
Sbjct: 99 SLNPRLRIGQILDFPLRLNT---DLEPEQRRKQIFETLRM---VGLLP--DHANYYPH-- 148
Query: 167 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-GELSGKTRVLVTN 225
++ GQKQRV++ARA+ + I D+ L++LD + Q+ + + E G + + VT
Sbjct: 149 MLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQ 208
Query: 226 QLHFLSQV-DRIILVHEGMVKEEGTFEDL--SNNGELFQKLME 265
+ + + D+++++HEG V E G+ D+ S EL ++L+E
Sbjct: 209 HIGMIKHISDQVLVMHEGEVVERGSTADVLASPLHELTKRLIE 251
|
Length = 267 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 1e-08
Identities = 63/235 (26%), Positives = 109/235 (46%), Gaps = 40/235 (17%)
Query: 685 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI-- 742
++ + + V ++G GAGK+++ N L + G IL+ G I GL +I
Sbjct: 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIE--GLPG-HQIAR 79
Query: 743 LGIIP--QSPVLF-SGTVRFNL------------------DPFSEHSDADLWEALERAHL 781
+G++ Q LF TV NL P +++ EAL+RA
Sbjct: 80 MGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAES---EALDRA-- 134
Query: 782 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT---- 837
A +GL + N + GQ++ L ++R ++ + +IL+LDE A ++ +
Sbjct: 135 --ATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKEL 192
Query: 838 DALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 891
D LI + +R E T+L+I H + ++ DRI +++ G L TPEE+ +N
Sbjct: 193 DELIAE-LRNEHN-VTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRNNP 245
|
Length = 255 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (136), Expect = 1e-08
Identities = 46/182 (25%), Positives = 92/182 (50%), Gaps = 20/182 (10%)
Query: 697 GIVGRTGAGKSSMLNTLFRIVELERG-----RILIDGFDIAKFGL--MDLRKILGIIPQS 749
G +G +G GKS++L +L R+ +L +G + G D+ G+ + +R+ +G++ Q
Sbjct: 38 GFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQ 97
Query: 750 PVLFSGTVRFN------LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENF 803
P FS ++ N L+ + + AL+ A L D ++ ++ +G +
Sbjct: 98 PNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSL 150
Query: 804 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNT 863
S GQ+Q L ++RA+ ++L+LDE +A+D +++ + E K T+ ++ H +
Sbjct: 151 SGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQ 210
Query: 864 II 865
I
Sbjct: 211 AI 212
|
Length = 261 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 1e-08
Identities = 57/215 (26%), Positives = 88/215 (40%), Gaps = 38/215 (17%)
Query: 54 KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQ 113
ER L N+NL+I G +VA+VG +G GKT+L+ +LG RG Y P
Sbjct: 393 VIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGA--------QKGRGEEKYRPD 444
Query: 114 VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPG---GDVTEIGERGVN--- 167
+ V SA P YE ++ L G V + G++
Sbjct: 445 -----SGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAV 499
Query: 168 --------ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR--GELS- 216
+S GQK+R +A+ + +V + D+ AH+ R R EL+
Sbjct: 500 LYRRKFSELSTGQKERAKLAKLLAERPNVLLIDE----FAAHLDELTAVRVARKISELAR 555
Query: 217 --GKTRVLVTNQLHFLSQV--DRIILVHEGMVKEE 247
G T ++VT++ + + D +ILV G V
Sbjct: 556 EAGITLIVVTHRPEVGNALRPDTLILVGYGKVPVN 590
|
Length = 593 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 52/222 (23%), Positives = 103/222 (46%), Gaps = 30/222 (13%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-------------- 107
+++L++ G +V ++G G GKT+L + + G P S + + RG
Sbjct: 22 DVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKP-SSGTVIFRGRDITGLPPHRIARLG 80
Query: 108 VAYVPQVSWIF-NATVRDNIL--------FGSAFEPARYEKAIDVTSLQHDLDLLPGGDV 158
+A Q++ +F TV +N+ R K + + +LL +
Sbjct: 81 IARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEERE-ARERARELLEFVGL 139
Query: 159 TE-IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG--EL 215
E N+S GQ++R+ +ARA+ + + + D+P + L+ ++ + IR +
Sbjct: 140 GELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAEL-IRELRDR 198
Query: 216 SGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 256
G T +L+ + + + + DRI++++ G V EGT E++ NN
Sbjct: 199 GGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNN 240
|
Length = 250 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 63/235 (26%), Positives = 109/235 (46%), Gaps = 33/235 (14%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA--------- 732
VL G+S D + I+G +G+GKS+ L + + + G I ++G +I
Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQL 80
Query: 733 ----KFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEH----SDADLWEALERA-HLK 782
K L LR LG++ Q L+S TV N+ H S A EA+ERA
Sbjct: 81 KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKA---EAIERAEKYL 137
Query: 783 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 842
+ G+ + + S GQ+Q ++++RAL ++++ DE T+A+D +
Sbjct: 138 AKV-----GIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVL 192
Query: 843 KTIR---EEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 893
K ++ EE + TM+++ H + D ++ L G++ E PE++ N S
Sbjct: 193 KVMQDLAEEGR--TMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGNPQS 245
|
Length = 256 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 2e-08
Identities = 56/268 (20%), Positives = 103/268 (38%), Gaps = 36/268 (13%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--------DASAVIRGTVAYVPQ 113
NI+ ++P G + ++G G GKT+ +LG L P S I+ + Y+P+
Sbjct: 20 NISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPE 79
Query: 114 VSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGG 171
++ TV D + + + E KA LQ L ++ + + +S G
Sbjct: 80 ERGLYPKMTVEDQLKYLA--ELKGMPKAEIQKKLQ---AWLERLEIVGKKTKKIKELSKG 134
Query: 172 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS 231
+Q++ AV ++ I D+P S LD + D + G T + + H +
Sbjct: 135 NQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSS---HRME 191
Query: 232 QV----DRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDN-- 285
V DR++++ +G GT ED+ + GK +E E + N
Sbjct: 192 HVEELCDRLLMLKKGQTVLYGTVEDIRR----------SFGKKRLVIESDLSLEELANIP 241
Query: 286 --KTSKPAANGVDNDLPKEASDTRKTKE 311
+G + + R+ +
Sbjct: 242 GILKITETKDGSWRIQIENETVAREIFQ 269
|
Length = 300 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 2e-08
Identities = 89/374 (23%), Positives = 150/374 (40%), Gaps = 76/374 (20%)
Query: 534 RAYKAYDRMADINGKSMDKNI-RYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGS 592
RA ++ + + + +I R ++ A W I + GL+ ++ + G
Sbjct: 205 RAEYVFENEYEPDAQEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFYMANSL-----GW 259
Query: 593 AENQEAFASTMGLLLSYALNI----TSLLTAV-----LRLASLAENSLNAVERVGNYIEL 643
A+ A+T Y+L + T LL+AV L A +A N LN +
Sbjct: 260 ADTN--VAAT------YSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALA------ 305
Query: 644 PSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE---LPPVLHGLSFTIPPSDKVGIVG 700
P +A + P W + ++ +V Y+ + P+ + TI + + ++G
Sbjct: 306 PYKAEF--PRPQAFPDWQT---LELRNVTFAYQDNGFSVGPI----NLTIKRGELLFLIG 356
Query: 701 RTGAGKS--SMLNT-LFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTV 757
G+GKS +ML T L++ G IL+DG + D RK+ + LF
Sbjct: 357 GNGSGKSTLAMLLTGLYQPQS---GEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQL- 412
Query: 758 RFNLDPFSEHSDADLWEA-LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 816
L P + ++ L E LER + + D ++S S GQ++ L+L A
Sbjct: 413 ---LGPEGKPANPALVEKWLERLKMAHKLELE----DGRISNL--KLSKGQKKRLALLLA 463
Query: 817 LLRRSKILVLDEATAAVDVRTDALIQKTIREEF----------KSCTMLIIAHRLNTIID 866
L IL+LDE A D R EF T+ I+H + I
Sbjct: 464 LAEERDILLLDEWAADQD--------PHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIH 515
Query: 867 CDRILLLDSGRVLE 880
DR+L + +G++ E
Sbjct: 516 ADRLLEMRNGQLSE 529
|
Length = 547 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-08
Identities = 73/308 (23%), Positives = 137/308 (44%), Gaps = 42/308 (13%)
Query: 684 HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI-DG---FDIAKFGLMDL 739
H S I + ++G +G+GKS++L + + + RG +L+ DG D+A L
Sbjct: 41 HNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATL 100
Query: 740 RKI-----------LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRN 788
R++ ++P V V F L+ A E +R + +
Sbjct: 101 RRLRTHRVSMVFQQFALLPWRTVE--ENVAFGLE-MQGMPKA---ERRKRVDEQLEL--- 151
Query: 789 SLGLDA-QVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD--VRT---DALI- 841
+GL + GE S G +Q + L+RA + IL++DE +A+D +RT D L+
Sbjct: 152 -VGLAQWADRKPGE-LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLE 209
Query: 842 -QKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSNEGSSFSK-M 898
Q +++ T++ ++H L+ + +RI +++ GR++++ TPEE++ N + +
Sbjct: 210 LQSKLKK-----TIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVADF 264
Query: 899 VQSTGAANAQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAA-AQYALAVSLTSS 957
V T N R L+ K+ E WL ++ A L V+ ++
Sbjct: 265 VAHTNPLNVLTARDLMRPLTTLEKVDGEWCVSKRYDTWLKTADKQVRRAAAGLPVAAWAA 324
Query: 958 HNDLQRLE 965
+++ LE
Sbjct: 325 EQEVESLE 332
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 3e-08
Identities = 59/229 (25%), Positives = 107/229 (46%), Gaps = 23/229 (10%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-- 739
VL G+S I + V IVG +G+GKS+++N L + + G + G D+A L
Sbjct: 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82
Query: 740 --RKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQV 796
R+ G I Q L S T N++ + ++ + + L RA + ++R LGL+ +V
Sbjct: 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQ--ELLQR--LGLEDRV 138
Query: 797 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA---LIQKTIREEFKSCT 853
S GQ+Q +S++RAL+ ++++ DE T A+D + I +R+ + T
Sbjct: 139 EYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD--RGHT 196
Query: 854 MLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 902
++I+ H +R++ + G E++ N + V
Sbjct: 197 VIIVTHDPQVAAQAERVIEIRDG---------EIVRNPPAQEKVNVAGG 236
|
Length = 648 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 3e-08
Identities = 58/277 (20%), Positives = 105/277 (37%), Gaps = 66/277 (23%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG--ELPPVSDASAVIRGTVAYVPQVSWI 117
L NI+ I G ++ I+G +G GK+ L+ + G + P + +I VA + ++
Sbjct: 16 LKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEP--TSGRIIY-HVALCEKCGYV 72
Query: 118 --------------------------------FNATVRDNILFGSAFEPARYEKAID--- 142
R I+ F + +D
Sbjct: 73 ERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVL 132
Query: 143 ----------VTSLQHDLDLLPGGDVTEIGERGVNI----SGGQKQRVSMARAVYSNSDV 188
++ +DL+ ++ ++ R +I SGG+KQRV +AR + +
Sbjct: 133 EALEEIGYEGKEAVGRAVDLI---EMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFL 189
Query: 189 FIFDDPLSALDAHVGRQVFDRCIRG-ELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKE 246
F+ D+P LD + V + + SG + VL ++ + + D+ I + G +KE
Sbjct: 190 FLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKE 249
Query: 247 EGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETV 283
EGT +++ ME E E E GE +
Sbjct: 250 EGTPDEVVA------VFMEGV-SEVEKECEVEVGEPI 279
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 3e-08
Identities = 61/279 (21%), Positives = 116/279 (41%), Gaps = 54/279 (19%)
Query: 25 EEKILLPNPPLTSGLPAISIRNGYFSWDSKAERP--TLLNINLDIPVGSLVAIVGGTGEG 82
++K+ +PNP S + ++N Y +D K E L NI+ + I+G +G G
Sbjct: 7 KKKLKVPNP--LSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSG 64
Query: 83 KTSLISAMLGELPP----------------------VSDASAVI------RGTVAYVPQV 114
K++L++ G + + S I R V+ V Q
Sbjct: 65 KSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQF 124
Query: 115 S--WIFNATVRDNILFGS-AFEPARYEKA------IDVTSLQHD-LDLLPGGDVTEIGER 164
+F T+ +I+FG A + E ++ L L+ P G
Sbjct: 125 PEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFG-------- 176
Query: 165 GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVT 224
+SGGQK+RV++A + ++ IFD+P + LD ++ + + + KT ++T
Sbjct: 177 ---LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVIT 233
Query: 225 NQL-HFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQK 262
+ + H L D +I++ +G + + GT ++ + +
Sbjct: 234 HTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINS 272
|
Length = 320 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 3e-08
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 24/166 (14%)
Query: 56 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM------------LGEL----PPVSD 99
E+ L +I + IP + A++G +G GK++L+ G++ + D
Sbjct: 18 EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77
Query: 100 ASA---VIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDV---TSLQHDLDLL 153
+ A +R + V Q F ++ +N+ +G + +K +D SL+
Sbjct: 78 SGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWD 137
Query: 154 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 199
D + + +++SGGQ+QR+ +AR + N +V + D+P SALD
Sbjct: 138 EVKD--RLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALD 181
|
Length = 253 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 3e-08
Identities = 57/213 (26%), Positives = 102/213 (47%), Gaps = 23/213 (10%)
Query: 680 PPV--LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM 737
PV L ++ T+ P + ++G GAGKS+++ L I E +G I I+ + K
Sbjct: 16 GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHK 75
Query: 738 DLRKI-LGIIPQS-PVLFSGTVRFNLDPFSEHSDADLW--------EALERAHLKDAIRR 787
++ +GII Q V+ TV NL H + E RA A+
Sbjct: 76 LAAQLGIGIIYQELSVIDELTVLENL-YIGRHLTKKVCGVNIIDWREMRVRA----AMML 130
Query: 788 NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAV-DVRTDAL--IQKT 844
+GL + E N S+ +Q+L +++ L+ +K++++DE T+++ + D L I
Sbjct: 131 LRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQ 190
Query: 845 IREEFKSCTMLIIAHRLNTIID-CDRILLLDSG 876
+R+E + ++ I+H+L I CDR ++ G
Sbjct: 191 LRKEGTA--IVYISHKLAEIRRICDRYTVMKDG 221
|
Length = 510 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 3e-08
Identities = 60/240 (25%), Positives = 96/240 (40%), Gaps = 39/240 (16%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL------------FRIVELERGRILIDGF 729
+L LS I P ++GR GAGKS++L L R+ G + ++G
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARV----TGDVTLNGE 71
Query: 730 DIAKFGLMDLRKILGIIPQS--PVL-FSGTVRFNLDPF--------SEHSDADL-WEALE 777
+A L ++ ++PQ+ P FS L + H D ++ W+AL
Sbjct: 72 PLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALA 131
Query: 778 RAHLKDAIRRNSLGLDAQVSEAGENFSVG-QRQLLSL--SRALLRRSKILVLDEATAAVD 834
A + R D GE V R L L + + L+LDE TAA+D
Sbjct: 132 LAGATALVGR-----DVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALD 186
Query: 835 VRTDALIQKTIREEFKSCTM--LIIAHRLNTII-DCDRILLLDSGRVLEYDTPEELLSNE 891
+ + T+R + + L I H N DRI +L G ++ + P ++L+
Sbjct: 187 LAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVLTPA 246
|
Length = 272 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 4e-08
Identities = 40/183 (21%), Positives = 76/183 (41%), Gaps = 24/183 (13%)
Query: 56 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-------DASAVIRGTV 108
ER +++ + G + I G G GKT+L+ + G L P + + +R +
Sbjct: 14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESY 73
Query: 109 AYVPQVSWIFNA-------TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 161
+ ++ + T +N+ F F + I + L D+ +
Sbjct: 74 H--QALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIW--EALAQVGLAGLEDL-PV 128
Query: 162 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRV 221
G +S GQ++RV++AR S + ++I D+P +ALD G + + + V
Sbjct: 129 G----QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKE-GVALLTALMAAHAAQGGIV 183
Query: 222 LVT 224
L+T
Sbjct: 184 LLT 186
|
Length = 209 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 4e-08
Identities = 54/200 (27%), Positives = 93/200 (46%), Gaps = 30/200 (15%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPP--VSDASAVIRGTVAYVP--- 112
L I+LD + A++G +G GK++ + + + +L P + +RG Y P
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 113 ------QVSWIFNA------TVRDNILFGSAFEPARYEKAIDV---TSLQHDLDLLPGGD 157
QV +F ++ +N+++G + + +D TSL+ D
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKD 140
Query: 158 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 217
+ E +++SGGQ+QRV +AR + DV + D+P SALD Q+ + + EL
Sbjct: 141 --HLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLL--ELRD 196
Query: 218 K-TRVLVTNQLHFLSQVDRI 236
+ T +LVT H + Q RI
Sbjct: 197 QYTIILVT---HSMHQASRI 213
|
Length = 252 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 4e-08
Identities = 62/218 (28%), Positives = 105/218 (48%), Gaps = 33/218 (15%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYV---------- 111
N +LDI G + ++G +G GK++L+ A+ G L PVS S +++ V
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSTLLRAVNG-LNPVSRGSVLVKDGDGSVDVANCDAATL 100
Query: 112 -----PQVSWIFNA-------TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVT 159
+VS +F TV +N+ FG E KA + L+L+ +
Sbjct: 101 RRLRTHRVSMVFQQFALLPWRTVEENVAFG--LEMQGMPKAERRKRVDEQLELV---GLA 155
Query: 160 EIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR--GELS 216
+ +R +SGG +QRV +ARA + + + + D+P SALD + Q+ D + +L
Sbjct: 156 QWADRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKLK 215
Query: 217 GKTRVLVTNQL-HFLSQVDRIILVHEGMVKEEGTFEDL 253
KT V V++ L L +RI ++ G + + GT E++
Sbjct: 216 -KTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEI 252
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 4e-08
Identities = 69/247 (27%), Positives = 104/247 (42%), Gaps = 50/247 (20%)
Query: 27 KILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTS 85
K P P G P IS + F + P L N+N I + S +A+VG G GK++
Sbjct: 494 KFEFPTPDDRPGPPIISFSDASFGYPGG---PLLFKNLNFGIDLDSRIAMVGPNGIGKST 550
Query: 86 LISAMLGELPPVSDASAVIRGTVAYVPQVSW-IFNATVRDNILFGSAFEPARYEKAIDVT 144
++ + GEL P S GTV +V +F+ D + S
Sbjct: 551 ILKLISGELQPSS-------GTVFRSAKVRMAVFSQHHVDGLDLSS-------------N 590
Query: 145 SLQHDLDLLPGGDVTE------IGERGVN----------ISGGQKQRVSMARAVYSNSDV 188
L + + PG V E +G GV +SGGQK RV+ A+ + +
Sbjct: 591 PLLYMMRCFPG--VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 648
Query: 189 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVL-VTNQLHFLS-QVDRIILVHEGMVKE 246
+ D+P + LD + I+G + + VL V++ H +S VD + +V EG V
Sbjct: 649 LLLDEPSNHLDL----DAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVTP 704
Query: 247 -EGTFED 252
GTF D
Sbjct: 705 FHGTFHD 711
|
Length = 718 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 4e-08
Identities = 57/225 (25%), Positives = 109/225 (48%), Gaps = 24/225 (10%)
Query: 683 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI---VELER--GRILIDGFDI--AKFG 735
L + IP +G +G GKS+ L L R+ ++ R G+I +DG DI +
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94
Query: 736 LMDLRKILGIIPQSPVLFSGTVRFNL--DPFSE---HSDADLWE----ALERAHLKDAIR 786
+++LR +G++ Q P F ++ N+ P S A+L E +L +A L + ++
Sbjct: 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK 154
Query: 787 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR 846
++ E G S GQ+Q L ++RA+ +++++DE +A+D A +++ I
Sbjct: 155 D-------RLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELID 207
Query: 847 EEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 890
E ++ T++I+ H + R G ++E E++ +N
Sbjct: 208 ELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMFTN 252
|
Length = 267 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 4e-08
Identities = 60/256 (23%), Positives = 106/256 (41%), Gaps = 31/256 (12%)
Query: 56 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLIS---------------------AMLGEL 94
E L N +L + ++G TG GK+++I A L ++
Sbjct: 23 EFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKI 82
Query: 95 PPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLP 154
V I G V P+ +F T+ +I FG ++A L LP
Sbjct: 83 KEVKRLRKEI-GLVFQFPEYQ-LFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLP 140
Query: 155 GGDVTEIGERG-VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR- 212
+ +R +SGGQK+RV++A + + + + D+P LD + R
Sbjct: 141 ----EDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERL 196
Query: 213 GELSGKTRVLVTNQL-HFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKME 271
+ K ++VT+ + L D +I++HEG V G+ ++ +N EL K+ + K+
Sbjct: 197 NKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSNQELLTKIEIDPPKLY 256
Query: 272 EYVEE-KEDGETVDNK 286
+ + + K G + NK
Sbjct: 257 QLMYKLKNKGIDLLNK 272
|
Length = 289 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 5e-08
Identities = 59/229 (25%), Positives = 105/229 (45%), Gaps = 48/229 (20%)
Query: 55 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD------------ASA 102
+ L +++L +P G + A++G G GK++L+ L P S +S
Sbjct: 13 GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSR 72
Query: 103 VIRGTVAYVPQVSWIFNA-TVRDNILFG-----------SAFEPARYEKAIDVTSLQHDL 150
+ +A +PQ TVR+ + +G SA + AR +A++ T
Sbjct: 73 QLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQT------ 126
Query: 151 DLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 209
+ + +R + ++SGGQ+QR +A + ++ V + D+P + LD + QV
Sbjct: 127 ------RINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLD--INHQVELM 178
Query: 210 CIRGELS--GKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFED 252
+ EL+ GKT V V LH L+Q D ++++ G V +GT E+
Sbjct: 179 RLMRELNTQGKTVVTV---LHDLNQASRYCDHLVVLANGHVMAQGTPEE 224
|
Length = 255 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 5e-08
Identities = 55/217 (25%), Positives = 96/217 (44%), Gaps = 37/217 (17%)
Query: 56 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------ 103
E+ L NI+ ++ GS VA+VG TG GK++L+ L P S +
Sbjct: 19 EKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNK 78
Query: 104 ----IRGTVAYVPQV--SWIFNATVRDNILFG----SAFEPARYEKA---IDVTSLQHDL 150
+R V+ V Q + +F TV ++ FG E EKA + L DL
Sbjct: 79 NLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDL 138
Query: 151 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 210
I + +SGGQ +RV++A + ++ D+P + LD +++
Sbjct: 139 ----------ISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLF 188
Query: 211 IRGELSGKTRVLVTNQLHFLSQV--DRIILVHEGMVK 245
+ +G T +LVT+ + +++ D ++L H ++K
Sbjct: 189 KDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIK 225
|
Length = 287 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 5e-08
Identities = 55/229 (24%), Positives = 98/229 (42%), Gaps = 35/229 (15%)
Query: 45 RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI 104
R G +K P L N++L I G V ++G +G GK++L +LG P
Sbjct: 13 RTGGLFG-AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQ------ 65
Query: 105 RGTVAYVPQVSWIFN-----ATVRD-NILFG---SAFEPARYEKAIDVTSLQHDLDL--- 152
GTV++ Q + + A RD ++F SA P + I L+H L
Sbjct: 66 -GTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDES 124
Query: 153 -----------LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 201
+ G + + +SGGQ QR+++ARA+ + + D+ +S LD
Sbjct: 125 EQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMV 184
Query: 202 VGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEE 247
+ + + R ++ G + +T+ L + R+ ++ +G + EE
Sbjct: 185 LQAVILELLRKLQQA-FGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 5e-08
Identities = 56/225 (24%), Positives = 88/225 (39%), Gaps = 33/225 (14%)
Query: 669 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 728
E +R R VL L+ I P D V +VG++GAGK+ TL R++ G G
Sbjct: 385 ESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKT----TLLRMIL---GAQKGRG 437
Query: 729 FDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDP--FSEH-----SDADLWEA-LERAH 780
+ + D K+ L G EH D + L RA
Sbjct: 438 EEKYR---PDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAG 494
Query: 781 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 840
L DA+ S GQ++ L++ L R +L++DE A +D T
Sbjct: 495 LSDAVLYRR---------KFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVR 545
Query: 841 IQKTIRE---EFKSCTMLIIAHRLNTI--IDCDRILLLDSGRVLE 880
+ + I E E T++++ HR + D ++L+ G+V
Sbjct: 546 VARKISELAREAGI-TLIVVTHRPEVGNALRPDTLILVGYGKVPV 589
|
Length = 593 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 5e-08
Identities = 67/249 (26%), Positives = 104/249 (41%), Gaps = 53/249 (21%)
Query: 631 LNAVERVG--NYIELPSEAPLVIESNRPPPGWPSSGS---------IKFEDVVLRYRPEL 679
L AV ++G ++ P PL I P P ++ ++V R+
Sbjct: 269 LAAVPQLGAMKGLDYPRRFPL-ISLEHPAKQEPPIEQDTVVDGEPILQVRNLVTRF---- 323
Query: 680 PPVLHGL--------------SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
P+ GL SF + P + + +VG +G+GKS+ L R+VE + G I+
Sbjct: 324 -PLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEII 382
Query: 726 IDGFDI---AKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAH-- 780
+G I + L LR+ + I Q P +LDP D+ + E L R H
Sbjct: 383 FNGQRIDTLSPGKLQALRRDIQFIFQDPYA-------SLDPRQTVGDS-IMEPL-RVHGL 433
Query: 781 -LKDAIRRNSLGLDAQVSEAGEN-------FSVGQRQLLSLSRALLRRSKILVLDEATAA 832
A L +V E+ FS GQRQ + ++RAL K+++ DEA +A
Sbjct: 434 LPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSA 493
Query: 833 VDVRTDALI 841
+DV I
Sbjct: 494 LDVSIRGQI 502
|
Length = 623 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 6e-08
Identities = 51/212 (24%), Positives = 91/212 (42%), Gaps = 25/212 (11%)
Query: 56 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIR----- 105
E+ L ++L+I G V ++G G GK++L++A+ G+L P S D V +
Sbjct: 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAK 77
Query: 106 --GTVAYV---PQVSWIFNATVRDNILF------GSAFEPARYEKAIDVTSLQHDLDLLP 154
+A V P T+ +N+ A E+ S + L L
Sbjct: 78 RANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRS--SFRERLARLG 135
Query: 155 GGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE 214
G + +R +SGGQ+Q +S+ A + + D+ +ALD V + +
Sbjct: 136 LGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIV 195
Query: 215 LSGK-TRVLVTNQL-HFLSQVDRIILVHEGMV 244
K T ++VT+ + L +R+I++H G +
Sbjct: 196 EEHKLTTLMVTHNMEDALDYGNRLIMLHSGKI 227
|
Length = 263 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 6e-08
Identities = 56/220 (25%), Positives = 101/220 (45%), Gaps = 36/220 (16%)
Query: 52 DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYV 111
+ K + L ++L I G +VAIVG +G GK++L+ + G P S G V +
Sbjct: 13 EGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTS-------GEVLFN 65
Query: 112 PQVSWIFNATVRD---NILFGSAFEPARYEKAIDVTSLQH-DLDLLPGG-DVTEIGERGV 166
Q ++ R N G ++ + D T+L++ + LL G V E ER
Sbjct: 66 GQSLSKLSSNERAKLRNKKLGFIYQ--FHHLLPDFTALENVAMPLLIGKKSVKEAKERAY 123
Query: 167 N-----------------ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 209
+SGG++QRV++ARA+ + + + D+P LD + + +FD
Sbjct: 124 EMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFD- 182
Query: 210 CIRGEL---SGKTRVLVTNQLHFLSQVDRIILVHEGMVKE 246
+ EL + ++VT+ L ++DR++ + +G +
Sbjct: 183 -LMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 6e-08
Identities = 48/230 (20%), Positives = 97/230 (42%), Gaps = 47/230 (20%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVP------- 112
L +++ + G L ++G G GKT+L+ + G+ P + + G
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRP-QEGEVLFDGDTDLTKLPEHRIA 79
Query: 113 --------QVSWIF-NATVRDNI---------LFGSAF------EPARYEKAIDVTSLQH 148
Q +F N TVR+N+ +F S F E R ++ + L
Sbjct: 80 RAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGD 139
Query: 149 DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 208
+ D L +S GQKQ + + + + + + D+P++ + + +
Sbjct: 140 ERDRLAA-----------LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAE 188
Query: 209 RCIRGELSGKTRVLVTNQ-LHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 256
+ L+GK +LV + F+ ++ D++ ++HEG V EG+ +++ N+
Sbjct: 189 --LLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQND 236
|
Length = 249 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 6e-08
Identities = 61/230 (26%), Positives = 104/230 (45%), Gaps = 37/230 (16%)
Query: 56 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSL---ISAMLGELP-------------PVSD 99
E+ L +++LDIP ++ A +G +G GK++ ++ M + + D
Sbjct: 31 EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYD 90
Query: 100 AS---AVIRGTVAYVPQVSWIFNATVRDNILFGS---AFEPARYE-KAIDVTSLQHDLDL 152
+R V V Q F ++ +N+ +G ++ E I TSL+
Sbjct: 91 PRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRK---- 146
Query: 153 LPGGDVTEIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 208
G E+ +R G +SGGQ+QR+ +ARA+ + +V + D+P SALD +V +
Sbjct: 147 --AGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKV-E 203
Query: 209 RCIRGELSGK-TRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 256
I EL T V+VT+ + ++V R H G + E G E + N
Sbjct: 204 ELID-ELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMFTN 252
|
Length = 267 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 6e-08
Identities = 70/234 (29%), Positives = 104/234 (44%), Gaps = 38/234 (16%)
Query: 30 LPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA 89
LPNP L + GY +R L +I L++ GS + ++G G GK++LI
Sbjct: 308 LPNPLLKME----KVSAGY------GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKL 357
Query: 90 MLGELPPVSDASAVIRGT-VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 148
+ GEL PVS + +G + Y Q F + + P E Q
Sbjct: 358 LAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELE--------QK 409
Query: 149 DLDLLPG----GD-VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 203
D L G GD VTE R SGG+K R+ +A V+ ++ + D+P + LD +
Sbjct: 410 LRDYLGGFGFQGDKVTEETRR---FSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDM- 465
Query: 204 RQVFDRCI---RGELSGKTRVLVTNQLHFL-SQVDRIILVHEGMVKE-EGTFED 252
RQ + G L V+V++ H L S D + LVH+G V+ +G ED
Sbjct: 466 RQALTEALIDFEGAL-----VVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLED 514
|
Length = 638 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 6e-08
Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 25/158 (15%)
Query: 56 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIRGTVAY 110
++P L I+ +P G L+ + G G GKT+L+ + G L P + ++ + Y
Sbjct: 13 DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTY 72
Query: 111 VPQVSWIF-------NATVRDNILFGSAFEPARYE--KAIDVTSLQHDLDLLPGGDVTEI 161
Q+ ++ T+R+N L+ F P + + SL+H +D P G
Sbjct: 73 QKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLID-YPCG----- 126
Query: 162 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 199
+S GQK++V++ R S + +++ D+PL ALD
Sbjct: 127 -----LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALD 159
|
Length = 200 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 7e-08
Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 31/158 (19%)
Query: 61 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-VAYVP----QVS 115
++ +L G + AIVG +G GK++L++ + G P S +I G V P VS
Sbjct: 15 MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQS-GRVLINGVDVTAAPPADRPVS 73
Query: 116 WIF-------NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 161
+F + TV N+ G +A + E A+ L LPG
Sbjct: 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPG------ 127
Query: 162 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 199
+SGG++QRV++AR + + V + D+P +ALD
Sbjct: 128 -----ELSGGERQRVALARVLVRDKPVLLLDEPFAALD 160
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 7e-08
Identities = 45/183 (24%), Positives = 94/183 (51%), Gaps = 16/183 (8%)
Query: 690 IPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKFGLMDLRKI 742
IP + +G +G GKS++L R+ +L GR+L +I ++ + LR+
Sbjct: 43 IPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQ 102
Query: 743 LGIIPQSPVLFSGTVRFNL--DPFSEHSDADLWEALERAHLKDAIRRNSL--GLDAQVSE 798
+G++ Q P F ++ N+ P + +L E +E D++RR ++ + ++ E
Sbjct: 103 VGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVE-----DSLRRAAIWEEVKDKLKE 157
Query: 799 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIA 858
G S GQ+Q L ++RA+ + +L++DE +A+D + +++ E + T++++
Sbjct: 158 KGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVT 217
Query: 859 HRL 861
H +
Sbjct: 218 HNM 220
|
Length = 274 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 7e-08
Identities = 48/169 (28%), Positives = 78/169 (46%), Gaps = 28/169 (16%)
Query: 683 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LMDL 739
L G+SFT+ + +VG +G GKS++ L I G + G D+ K L
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLL 90
Query: 740 RKILGIIPQSPVLFSG-----TVRFNL-DPFSEHSDADLWEALERAHLKDAIRRNSLGLD 793
R+ + I+ Q+P + V L +P ++ A ER R +L +
Sbjct: 91 RQKIQIVFQNP--YGSLNPRKKVGQILEEPLLINTSLS---AAER-------REKALAMM 138
Query: 794 AQVSEAGEN-------FSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 835
A+V E+ FS GQRQ ++++RAL+ ++V DE +A+DV
Sbjct: 139 AKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDV 187
|
Length = 327 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 8e-08
Identities = 36/163 (22%), Positives = 68/163 (41%), Gaps = 26/163 (15%)
Query: 53 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIRGT 107
S+ ER ++ + G + + G G GKT+L+ + G L P S + +A+
Sbjct: 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR 68
Query: 108 VAYVPQVSWIFNA-------TVRDNILFGSAF---EPARYEKAIDVTSLQHDLDLLPGGD 157
+ ++ + + +N+ F +A E A+ L DL
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAA-- 126
Query: 158 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 200
+S GQ++R+++AR S + ++I D+P +ALD
Sbjct: 127 ---------QLSAGQQRRLALARLWLSRAPLWILDEPTTALDK 160
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 8e-08
Identities = 48/195 (24%), Positives = 85/195 (43%), Gaps = 36/195 (18%)
Query: 56 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI----------- 104
L N+N I G +V ++G +G GK++L+S M+G L + +
Sbjct: 14 GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLP 73
Query: 105 --RGTVAYVPQVSWIF-NATVRDNILF-------GSAFEPARYEKAIDVTSLQHDLDLLP 154
+ + + Q + +F + +V N+LF G+A A A++ + L P
Sbjct: 74 AAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANA-ALERSGLDGAFHQDP 132
Query: 155 GGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE 214
+SGGQ+ RV++ RA+ + + D+P S LD + R F + + E
Sbjct: 133 A-----------TLSGGQRARVALLRALLAQPKALLLDEPFSRLDVAL-RDQFRQWVFSE 180
Query: 215 L--SGKTRVLVTNQL 227
+ +G V VT+ L
Sbjct: 181 VRAAGIPTVQVTHDL 195
|
Length = 213 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 9e-08
Identities = 55/244 (22%), Positives = 113/244 (46%), Gaps = 20/244 (8%)
Query: 663 SGSIKFEDVVLRYRPELP---PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL 719
S I ++V Y + P L+ S T + ++G TG+GKS+M+ ++
Sbjct: 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS 63
Query: 720 ERGRILIDGFDIAKF-----GLMDLRKILGIIPQSP--VLFSGTVRFNLDPFSEHSDADL 772
E G+ ++ + I + LRK +G++ Q P LF T+ ++ + +
Sbjct: 64 ETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENK 123
Query: 773 WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 832
EA ++ + + ++ L D V + S GQ++ ++L+ + LVLDE T
Sbjct: 124 QEAYKK--VPELLKLVQLPED-YVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGG 180
Query: 833 VDVRTDA----LIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 887
+D + + L ++ +E K M + H ++ ++ D ++++ G+V+ +P E+
Sbjct: 181 LDPKGEEDFINLFERLNKEYKKRIIM--VTHNMDQVLRIADEVIVMHEGKVISIGSPFEI 238
Query: 888 LSNE 891
SN+
Sbjct: 239 FSNQ 242
|
Length = 289 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 1e-07
Identities = 42/188 (22%), Positives = 80/188 (42%), Gaps = 12/188 (6%)
Query: 55 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG--TVAYVP 112
+ L +N ++ G + I G +G GKTSL+ A L L P + + ++P
Sbjct: 404 DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRA-LAGLWPWGSGRISMPADSALLFLP 462
Query: 113 QVSWIFNATVRDNILFGSA---FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNIS 169
Q ++ T+R+ + + +A F A + L + L E +S
Sbjct: 463 QRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERL-----DEEDRWDRVLS 517
Query: 170 GGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHF 229
GG++QR++ AR + D+ SALD +++ + ++ EL T + V ++
Sbjct: 518 GGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLY-QLLKEELPDATVISVGHRPTL 576
Query: 230 LSQVDRII 237
+ R +
Sbjct: 577 WNFHSRQL 584
|
Length = 604 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 1e-07
Identities = 34/89 (38%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Query: 167 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVT 224
+SGGQKQRV++ARA+ SN V + D+ SALD R + + + I EL G T VL+T
Sbjct: 140 QLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINREL-GLTIVLIT 198
Query: 225 NQLHFLSQV-DRIILVHEGMVKEEGTFED 252
+++ + ++ DR+ ++ G + E+GT +
Sbjct: 199 HEMDVVKRICDRVAVIDAGRLVEQGTVSE 227
|
Length = 343 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 1e-07
Identities = 60/227 (26%), Positives = 100/227 (44%), Gaps = 48/227 (21%)
Query: 59 TLLN-INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT---------- 107
TLL+ ++L P G + ++G G GK++L+ MLG P S+ ++
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLK-MLGRHQPPSEGEILLDAQPLESWSSKAF 83
Query: 108 ---VAYVPQ-VSWIFNATVRDNILFG-----------SAFEPARYEKAIDVTSLQHDLDL 152
VAY+PQ + TVR+ + G A + + E+AI + L
Sbjct: 84 ARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGL------ 137
Query: 153 LPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALD-AHVGRQVFDRC 210
+ R V+ +SGG++QR +A V +S + D+P SALD AH QV
Sbjct: 138 ------KPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAH---QVDVLA 188
Query: 211 IRGELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDL 253
+ LS + + V LH ++ D ++ + G + +GT +L
Sbjct: 189 LVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235
|
Length = 265 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 1e-07
Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 31/155 (20%)
Query: 64 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT--VAYVPQ---VSWIF 118
+L + G VAI+G +G GK++L++ + G L P S S + G P VS +F
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPAS-GSLTLNGQDHTTTPPSRRPVSMLF 77
Query: 119 -------NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGER 164
+ TV NI G +A + + ++ L LPG
Sbjct: 78 QENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPG--------- 128
Query: 165 GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 199
+SGGQ+QRV++AR + + + D+P SALD
Sbjct: 129 --QLSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 1e-07
Identities = 47/199 (23%), Positives = 82/199 (41%), Gaps = 54/199 (27%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-------------DASAVIRGTV 108
+++ ++ G +V I G G G+T L A+ G PP S IR +
Sbjct: 18 DVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77
Query: 109 AYVP----QVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGER 164
AYVP + + + +V +NI S LL
Sbjct: 78 AYVPEDRKREGLVLDLSVAENIALSS---------------------LL----------- 105
Query: 165 GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVT 224
SGG +Q+V +AR + + V I D+P +D +++ +GK +L++
Sbjct: 106 ----SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLIS 161
Query: 225 NQLHFLSQV-DRIILVHEG 242
++L L + DRI++++EG
Sbjct: 162 SELDELLGLCDRILVMYEG 180
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 1e-07
Identities = 51/210 (24%), Positives = 92/210 (43%), Gaps = 40/210 (19%)
Query: 55 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPV--------------- 97
E+ L +INL I + A++G +G GK++ + + + +L
Sbjct: 15 GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIY 74
Query: 98 -SDASAV-IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAID--------VTSLQ 147
D V +R V V Q F ++ DN+ +G + +K +D +L
Sbjct: 75 DKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALW 134
Query: 148 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 207
++ ++ + + +SGGQ+QR+ +AR + DV + D+P SALD ++
Sbjct: 135 DEVK-------DDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIE 187
Query: 208 DRCIRGELSGK-TRVLVTNQLHFLSQVDRI 236
D + EL + T V+VT H + Q R+
Sbjct: 188 DLMV--ELKKEYTIVIVT---HNMQQASRV 212
|
Length = 251 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (130), Expect = 1e-07
Identities = 55/236 (23%), Positives = 105/236 (44%), Gaps = 43/236 (18%)
Query: 44 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI------------SAML 91
IRN F W + L ++NLDI + A +G +G GK++ + ++
Sbjct: 83 IRNFNF-WYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHE 141
Query: 92 GELPPVSD-------ASAVIRGTVAYVPQVSWIFNATVRDNILFG--------SAFEPAR 136
GE+ + +S +R + V Q F ++ DN+ +G
Sbjct: 142 GEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKI 201
Query: 137 YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS 196
EK++ +L ++ ++ + G +SGGQ+QR+ +ARA+ +V + D+P S
Sbjct: 202 VEKSLKSAALWDEVK-------DDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTS 254
Query: 197 ALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRI----ILVHEGMVKEEG 248
ALD ++ + + EL K +++ H ++Q RI + ++G ++E G
Sbjct: 255 ALDPIATAKIEELIL--ELKKKYSIIIVT--HSMAQAQRISDETVFFYQGWIEEAG 306
|
Length = 329 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 55/217 (25%), Positives = 95/217 (43%), Gaps = 26/217 (11%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP---VSDASAVIRGTVAYVPQVSWIF 118
++NL + G ++A+VG +G GK+ A+LG LPP + ++ G +
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRH 63
Query: 119 NATVRDNILFGSAFEPAR--YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI-------- 168
AT+ N +AF P AI+ L + E E V +
Sbjct: 64 IATIMQNPR--TAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEA-VGLPDPEEVLK 120
Query: 169 ------SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTR 220
SGG QRV +A A+ I D+P + LD +V R +R +L G
Sbjct: 121 KYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELR-QLFGTGI 179
Query: 221 VLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 256
+L+T+ L ++++ D + ++ +G + E GT +++ N
Sbjct: 180 LLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 1e-07
Identities = 62/244 (25%), Positives = 118/244 (48%), Gaps = 31/244 (12%)
Query: 30 LPNPPLTSG---LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSL 86
+P P + P + IRN S+D + + +++L I G + A++G +G GK++L
Sbjct: 5 IPRPQAKTRKALTPLLEIRNLTKSFDGQ---HAVDDVSLTIYKGEIFALLGASGCGKSTL 61
Query: 87 ISAMLGELPPVSDASAVIRGTVAYVPQ----VSWIFNA-------TVRDNILFGSAFEPA 135
+ + G P + + +++VP ++ +F + TV NI FG +
Sbjct: 62 LRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFG--LKQD 119
Query: 136 RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDP 194
+ KA + + L L+ + E +R + +SGGQ+QRV++AR++ + + D+P
Sbjct: 120 KLPKAEIASRVNEMLGLV---HMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEP 176
Query: 195 LSALDA----HVGRQVFDRCIRGELSGKTRVLVT-NQLHFLSQVDRIILVHEGMVKEEGT 249
+ ALD + +V D E G T V+VT +Q ++ RI +++ G + G
Sbjct: 177 MGALDKKLRDRMQLEVVDIL---ERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGE 233
Query: 250 FEDL 253
E++
Sbjct: 234 PEEI 237
|
Length = 377 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 1e-07
Identities = 49/188 (26%), Positives = 81/188 (43%), Gaps = 35/188 (18%)
Query: 53 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVP 112
S A L N+++ IP+ LV + G +G GK++L++ L
Sbjct: 4 SGANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYA------------------- 44
Query: 113 QVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 172
+ I F F K I + LQ +D+ G +G++ +SGG+
Sbjct: 45 -------SGKARLISFLPKFS---RNKLIFIDQLQFLIDV--GLGYLTLGQKLSTLSGGE 92
Query: 173 KQRVSMARAVYSNSD--VFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHF 229
QRV +A ++S +FI D+P + L Q+ + I+G + G T +L+ + L
Sbjct: 93 LQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLE-VIKGLIDLGNTVILIEHNLDV 151
Query: 230 LSQVDRII 237
LS D II
Sbjct: 152 LSSADWII 159
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 1e-07
Identities = 68/224 (30%), Positives = 101/224 (45%), Gaps = 59/224 (26%)
Query: 657 PPGWPSSGS--IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF 714
PPG P G I+ E++ + +L ++ LSF +PP VG++G GAGKS TLF
Sbjct: 313 PPG-PRLGDKVIEAENLSKGFGDKL--LIDDLSFKLPPGGIVGVIGPNGAGKS----TLF 365
Query: 715 RIV----ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDP----FSE 766
R++ + + G I I + K +D QS R LDP + E
Sbjct: 366 RMITGQEQPDSGTIKIG--ETVKLAYVD---------QS--------RDALDPNKTVWEE 406
Query: 767 HSD-ADL-----WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 820
S D+ E RA++ R N G D Q + G+ S G+R + L++ L
Sbjct: 407 ISGGLDIIQLGKREVPSRAYVG---RFNFKGSDQQ-KKVGQ-LSGGERNRVHLAKTLKSG 461
Query: 821 SKILVLDEATAAVDVRT-----DALIQKTIREEFKSCTMLIIAH 859
+L+LDE T +DV T +AL EF C + +I+H
Sbjct: 462 GNVLLLDEPTNDLDVETLRALEEAL------LEFAGCAV-VISH 498
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 62/261 (23%), Positives = 113/261 (43%), Gaps = 56/261 (21%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS----------DASAV----IR 105
L IN++I G + AI+GG G GK++L + G L P S D S +R
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 106 GTVAYVPQV--SWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGE 163
+V V Q + +F+A+V ++ FG +L+ LP +V + +
Sbjct: 82 ESVGMVFQDPDNQLFSASVYQDVSFG-------------AVNLK-----LPEDEVRKRVD 123
Query: 164 RGVNISG--------------GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 209
+ +G GQK+RV++A + V + D+P + LD +G +
Sbjct: 124 NALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDP-MGVSEIMK 182
Query: 210 CIRGELS--GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNGELFQKL--- 263
+ G T ++ T+ + + D + ++ EG V +G +++ E+ +K+
Sbjct: 183 LLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEMLRKVNLR 242
Query: 264 MENAGKMEEYVEEKEDGETVD 284
+ G + E ++EK DG D
Sbjct: 243 LPRIGHLMEILKEK-DGFVFD 262
|
Length = 283 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 2e-07
Identities = 58/274 (21%), Positives = 103/274 (37%), Gaps = 50/274 (18%)
Query: 8 VVNANVSLKRMEEFLLAEEKILLPNP-PLTSGLPAISIRNGYFSWDSKAERPTLLN---- 62
+ A ++ +R+ +F E+ P P S + + S DS + +N
Sbjct: 294 LAQAQIACQRLADF---GERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAP 350
Query: 63 ----------INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIRGT 107
I+L I G +V IVG G GK++L G P D +AV +
Sbjct: 351 EGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADS 410
Query: 108 VAYVPQVSWIFNATVRDNILFGSAFEPARYEKA--------IDVTSLQHDLDLLPGGDVT 159
+F+A D LF P E A + + + + GG T
Sbjct: 411 RDDYRD---LFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFST 467
Query: 160 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL---- 215
+S GQ++R+++ A + + +FD+ + D F R EL
Sbjct: 468 T-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDP-----AFKRFFYEELLPDL 517
Query: 216 --SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEE 247
GKT +++++ + D+II + G + ++
Sbjct: 518 KRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 2e-07
Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 39/181 (21%)
Query: 46 NGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPV------ 97
N YF + L N+NLDIP S+ A++G +G GK++ I + + +L P
Sbjct: 10 NTYFD-----DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGH 64
Query: 98 ---------SDASAVI--RGTVAYVPQVSWIFNATVRDNILFG--------SAFEPARYE 138
A V+ R V V Q F ++ DN+ +G F R E
Sbjct: 65 IYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVE 124
Query: 139 KAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSAL 198
+++ +L ++ ++ + + +SGGQ+QR+ +AR + + +V + D+P SAL
Sbjct: 125 ESLKAAALWDEVK-------DKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSAL 177
Query: 199 D 199
D
Sbjct: 178 D 178
|
Length = 250 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 2e-07
Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 31/184 (16%)
Query: 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 99
P I IR F + + L NIN+D P + AI+G +G GK++L+ A+ VS
Sbjct: 3 PKIKIRGVNFFYH---KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSG 59
Query: 100 AS-------------------AVIRGTVAYVPQVSWIFNATVRDNILFGSAF----EPAR 136
A +R V V Q F ++ DN+ FG +R
Sbjct: 60 ARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSR 119
Query: 137 YEKAIDVTSLQHDLDLLPGGDVTE-IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL 195
++ ++ + Q L +V + + + G+ +SGGQ+QR+ +AR + +V + D+P
Sbjct: 120 LDEVVEKSLRQAAL----WDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPC 175
Query: 196 SALD 199
SALD
Sbjct: 176 SALD 179
|
Length = 251 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 2e-07
Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 19/162 (11%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE---RGRILIDGFDIAKFGLMD 738
+L ++FTI + V ++G +G GKS++L+ + + + G + ++ + L
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM--LPA 74
Query: 739 LRKILGIIPQSPVLFS-----GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLD 793
++ +GI+ Q +LF + F L L R A+ R GLD
Sbjct: 75 AQRQIGILFQDALLFPHLSVGQNLLFALPA-------TLKGNARRNAANAALER--SGLD 125
Query: 794 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 835
+ S GQR ++L RALL + K L+LDE + +DV
Sbjct: 126 GAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 54/238 (22%), Positives = 108/238 (45%), Gaps = 29/238 (12%)
Query: 686 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL----RK 741
+SF + P + +GIVG +G+GKS++L L + + G A+ L L R+
Sbjct: 22 VSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81
Query: 742 IL-----GIIPQSP-------VLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNS 789
L G + Q+P V + L ++ RA +D +
Sbjct: 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RATAQDWLEEVE 136
Query: 790 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA----LIQKTI 845
+ ++ + FS G +Q L ++R L+ R +++ +DE T +DV A L++ +
Sbjct: 137 IDPT-RIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLV 195
Query: 846 REEFKSCTMLIIAHRLNTI-IDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 902
R+ ++I+ H L + R+L++ GRV+E +++L + +++++ S+
Sbjct: 196 RD--LGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDDPQHPYTQLLVSS 251
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 2e-07
Identities = 50/204 (24%), Positives = 100/204 (49%), Gaps = 13/204 (6%)
Query: 683 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE--RGRILIDGFDIAKFGLMDL- 739
L +S + + V + G GAGKS+++ L + G I+ +G ++ + D
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTE 80
Query: 740 RKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADL--WEALERAHLKDAIRRNSLGLDAQV 796
R + II Q L +V N+ +E + + ++A+ +L+ L LD
Sbjct: 81 RAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAM---YLRAQKLLAQLKLDINP 137
Query: 797 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS--CTM 854
+ N +GQ+QL+ +++AL +++++L+LDE TA++ ++ + I + K+
Sbjct: 138 ATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASL-TESETAVLLDIIRDLKAHGIAC 196
Query: 855 LIIAHRLNTIID-CDRILLLDSGR 877
+ I+H+LN + D I ++ GR
Sbjct: 197 IYISHKLNEVKAISDTICVIRDGR 220
|
Length = 506 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 13/137 (9%)
Query: 66 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQ-VSWIFNATVRD 124
I ++ I+G G GKT+ I + G L P + TV+Y PQ + + TVRD
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRD 80
Query: 125 NILFGSAFEPARYEKAIDV-TSLQHDLDLLPGGDVTEIGERGVN-ISGGQKQRVSMARAV 182
+ D T ++ + +I +R V +SGG+ QRV++A +
Sbjct: 81 LL----------SSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACL 130
Query: 183 YSNSDVFIFDDPLSALD 199
++D+++ D+P + LD
Sbjct: 131 SKDADIYLLDEPSAYLD 147
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 3e-07
Identities = 65/236 (27%), Positives = 110/236 (46%), Gaps = 42/236 (17%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LER---GRILIDGFDIAKFGLM 737
VL+ +S IP V ++G +G+GK+ TL RI+ LE G I G D+++
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKT----TLLRIIAGLEHQTSGHIRFHGTDVSRLHAR 72
Query: 738 DLRKILGIIPQSPVLF-----SGTVRFNLD--PFSEHSDAD--------LWEALERAHLK 782
D RK+ G + Q LF + F L P E +A L E ++ AHL
Sbjct: 73 D-RKV-GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA 130
Query: 783 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 842
D AQ+S GQ+Q ++L+RAL +IL+LDE A+D + ++
Sbjct: 131 DR-------YPAQLSG-------GQKQRVALARALAVEPQILLLDEPFGALDAQVRKELR 176
Query: 843 KTIR---EEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 895
+ +R EE K ++ + + + DR++++ G + + TP+++ + F
Sbjct: 177 RWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRF 232
|
Length = 353 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 3e-07
Identities = 64/222 (28%), Positives = 100/222 (45%), Gaps = 31/222 (13%)
Query: 50 SWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----VSDASAVIR 105
SW S R + +++ P GSL ++G G GK++L+ + G L P V A +
Sbjct: 8 SW-SAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLH 66
Query: 106 G--------TVAYVPQ-VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDL---- 152
G VA V Q TVRD + G P R A D HD +
Sbjct: 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRI--PHRSLWAGDSP---HDAAVVDRA 121
Query: 153 LPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 211
L +++ + +R ++ +SGG++QRV +ARA+ + + D+P + LD V Q+ +
Sbjct: 122 LARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLD--VRAQLETLAL 179
Query: 212 RGELSGKTRVLVTNQLHFL----SQVDRIILVHEGMVKEEGT 249
EL+ T V V LH L S D ++++ G V G
Sbjct: 180 VRELAA-TGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGP 220
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 3e-07
Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 40/167 (23%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPV--SDASAVIRGTVAYVPQVSWI 117
N+ LDIP + A +G +G GK++++ L +L P + G Y P V +
Sbjct: 28 NVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87
Query: 118 ---------------FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE-- 160
F ++ DNI +G AR + + D+D L + +
Sbjct: 88 EVRRRIGMVFQKPNPFPKSIYDNIAYG-----AR------INGYKGDMDELVERSLRQAA 136
Query: 161 --------IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 199
+ + G+++SGGQ+QR+ +ARA+ +V + D+P SALD
Sbjct: 137 LWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183
|
Length = 264 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 3e-07
Identities = 55/212 (25%), Positives = 101/212 (47%), Gaps = 30/212 (14%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFN 119
L N++ I G ++AIVG +G GK++L+ +LG L + + G + ++S
Sbjct: 25 LHNVSFSIGEGEMMAIVGSSGSGKSTLLH-LLGGLDTPTSGDVIFNGQP--MSKLSSAAK 81
Query: 120 ATVRDNILFGSAFEPARYEKAIDVTSLQH-DLDLLPGGD------------VTEIG---- 162
A +R+ L F + D T+L++ + LL G + +G
Sbjct: 82 AELRNQKL---GFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHR 138
Query: 163 --ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS---G 217
R +SGG++QRV++ARA+ +N + + D+P LDA +F + GEL+ G
Sbjct: 139 ANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQ--LLGELNRLQG 196
Query: 218 KTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 249
++VT+ L ++ R + + +G + E +
Sbjct: 197 TAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228
|
Length = 233 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 4e-07
Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 40/170 (23%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPVSDASAVIRGTV------AYV 111
L INLDI + A++G +G GK++ + + + +L P S I G V Y
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIP----SVKIEGEVLLDGQDIYK 74
Query: 112 PQVSWI---------------FNATVRDNILFGSAFEPARYEKAIDV---TSLQHDLDLL 153
+ F ++ DN+ +G + +K +D SL+
Sbjct: 75 SDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKG----- 129
Query: 154 PGGDVTEIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 199
E+ +R + +SGGQ+QR+ +ARA+ +V + D+P SALD
Sbjct: 130 -AALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALD 178
|
Length = 250 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 4e-07
Identities = 39/167 (23%), Positives = 76/167 (45%), Gaps = 34/167 (20%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPVSDASAVIR--GTVAYVPQVS 115
L +I+L+ + A++G +G GK++ + + + +L P + I G Y P V
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 116 WI---------------FNATVRDNILFG--------SAFEPARYEKAIDVTSLQHDLDL 152
+ F ++ +N+ +G A+ R E+++ +L ++
Sbjct: 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK- 140
Query: 153 LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 199
+ E + +SGGQ+QR+ +ARA+ +V + D+P SALD
Sbjct: 141 ------DRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALD 181
|
Length = 253 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 5e-07
Identities = 64/232 (27%), Positives = 106/232 (45%), Gaps = 26/232 (11%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA--------- 732
VL G+S D + I+G +G+GKS+ L + + + G I+++G I
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79
Query: 733 ----KFGLMDLRKILGIIPQSPVLFSG-TVRFN-LDPFSEHSDADLWEALERAHLKDAIR 786
K L LR L ++ Q L+S TV N ++ + EA ERA
Sbjct: 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERA----VKY 135
Query: 787 RNSLGLD-AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD---VRTDALIQ 842
+G+D + + S GQ+Q +S++RAL ++L+ DE T+A+D V I
Sbjct: 136 LAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIM 195
Query: 843 KTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSNEGS 893
+ + EE K TM+++ H + ++ L G++ E PE+L N S
Sbjct: 196 QQLAEEGK--TMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQS 245
|
Length = 257 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 5e-07
Identities = 84/312 (26%), Positives = 135/312 (43%), Gaps = 83/312 (26%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LM 737
+L +S + P K+G++G GAGKS TL RI + G D G
Sbjct: 19 EILKDISLSFFPGAKIGVLGLNGAGKS----TLLRI---------MAGVDKEFNGEARPA 65
Query: 738 DLRKILGIIPQSPVL-FSGTVRFN-----------LDPFSEHS------DADLWEAL--E 777
K+ G +PQ P L + TVR N LD F+E S DAD+ +AL E
Sbjct: 66 PGIKV-GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADM-DALLAE 123
Query: 778 RAHLKDAIR-RNSLGLDAQVSEAGE------------NFSVGQRQLLSLSRALLRRSKIL 824
+A L++ I ++ LD ++ A + S G+R+ ++L R LL + +L
Sbjct: 124 QAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDML 183
Query: 825 VLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDR---------ILLLDS 875
+LDE T +D + A +++ ++ E+ T++ + H DR IL LD
Sbjct: 184 LLDEPTNHLDAESVAWLEQHLQ-EYPG-TVVAVTH--------DRYFLDNVAGWILELDR 233
Query: 876 GRVLEY--------DTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVLGGEAENKLR--- 924
GR + + + E+ L E S Q +++RS +A++K R
Sbjct: 234 GRGIPWEGNYSSWLEQKEKRLEQEEKEESAR-QKALKRELEWVRSSPKARQAKSKARLAR 292
Query: 925 -EENKQIDGQRR 935
EE + Q+R
Sbjct: 293 YEELLSQEFQKR 304
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 5e-07
Identities = 57/212 (26%), Positives = 105/212 (49%), Gaps = 32/212 (15%)
Query: 683 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---- 738
L G + + P + +VG GAGKS+M+ L I + G IL G ++ G
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEA 79
Query: 739 ----LRKILGIIPQSPV---LFSG---TVRFNLDPFSE-HSDADLWEALERAHLKDAIRR 787
+ + L +IPQ + +F G RF + + +++AD + L R +L+ + +
Sbjct: 80 GIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEAD--KLLARLNLRFSSDK 137
Query: 788 NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAV-DVRTDALIQKTIR 846
V E S+G++Q++ +++ L SK++++DE T A+ D T++L + IR
Sbjct: 138 -------LVGE----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLF-RVIR 185
Query: 847 E-EFKSCTMLIIAHRLNTIID-CDRILLLDSG 876
E + + ++ I+HRL I + CD + + G
Sbjct: 186 ELKSQGRGIVYISHRLKEIFEICDDVTVFRDG 217
|
Length = 501 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 6e-07
Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 27/168 (16%)
Query: 55 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLIS------------------AMLGELPP 96
E+ L N+++ IP S+ A++G +G GK++ I ++ GE
Sbjct: 23 GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIY 82
Query: 97 VSDASAV-IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPG 155
D V +R V V Q F ++ DN+ +G A +K +D L
Sbjct: 83 EPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGAN-KKDLDGVVENA---LRSA 138
Query: 156 GDVTEIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 199
E +R +++SGGQ+QR+ +AR + + +FD+P SALD
Sbjct: 139 ALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALD 186
|
Length = 258 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 6e-07
Identities = 58/234 (24%), Positives = 105/234 (44%), Gaps = 25/234 (10%)
Query: 676 RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF------ 729
+ ++ V + LSF++ + + IVG +G+GKS L R++E G + D
Sbjct: 26 QQKIAAVRN-LSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRS 84
Query: 730 ----DIAKFGLMDLRKILG----IIPQSPVLFSGTVRFNLDPFSE----HSDADLWEALE 777
++++ +R + G +I Q P+ V + +E H A EA+
Sbjct: 85 RQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMV 144
Query: 778 RA-HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 836
A + D +R +S S G RQ + ++ AL R +L+ DE T A+DV
Sbjct: 145 EAKRMLDQVRIPEA--QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVT 202
Query: 837 TDALIQKTIREEFKSCTM--LIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 887
A I + I+ K +M + I H + + + DR+L++ G +E + E++
Sbjct: 203 IQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQI 256
|
Length = 623 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 7e-07
Identities = 56/205 (27%), Positives = 92/205 (44%), Gaps = 33/205 (16%)
Query: 56 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLIS------------------AMLGELPPV 97
E L +INL IP + A++G +G GK++L+ M GE
Sbjct: 15 ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYG 74
Query: 98 SDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGD 157
+ A +R V V Q F ++ +N+ +G + + +K +D + L G
Sbjct: 75 NIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERS----LRGAA 130
Query: 158 V-TEIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 212
+ E+ +R +SGGQ+QR+ +AR + DV + D+P SALD ++ + +
Sbjct: 131 LWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEE--LM 188
Query: 213 GELSGK-TRVLVTNQLHFLSQVDRI 236
EL T V+VT H + Q RI
Sbjct: 189 EELKKNYTIVIVT---HSMQQARRI 210
|
Length = 249 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 7e-07
Identities = 63/250 (25%), Positives = 110/250 (44%), Gaps = 34/250 (13%)
Query: 49 FSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTS----------LISAMLGELPPVS 98
F D KA L NIN+ I S+ A++G +G GK++ L+ + E +
Sbjct: 16 FYTDFKA----LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIY 71
Query: 99 DASAV---------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHD 149
+ + +R + V Q F ++ DNI +G + +K +D Q
Sbjct: 72 EGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSL 131
Query: 150 LDLLPGGDVTE-IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 208
+V + + +++SGGQ+QR+ +AR + +V + D+P SALD ++ +
Sbjct: 132 KKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEE 191
Query: 209 RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 267
I + S T ++VT+ + ++ DR G ++EE S+ ELF
Sbjct: 192 LIINLKES-YTIIIVTHNMQQAGRISDRTAFFLNGCIEEE------SSTDELF--FNPKN 242
Query: 268 GKMEEYVEEK 277
K EEY+ K
Sbjct: 243 TKTEEYISGK 252
|
Length = 254 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 7e-07
Identities = 46/218 (21%), Positives = 104/218 (47%), Gaps = 40/218 (18%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----E 720
++ E++ + Y L + + IP + +G +G GKS++L R+ +L
Sbjct: 11 LRTENLNVYYGSFL--AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRV 68
Query: 721 RGRILIDGFDIAKFGL--MDLRKILGIIPQSPVLFSGTV-------------RFNLDPFS 765
G++ G ++ + +++R+ +G++ Q P F ++ + ++D
Sbjct: 69 EGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELV 128
Query: 766 EHS--DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 823
E S A LW+ +KD ++++ L L S GQ+Q L ++RA+ + ++
Sbjct: 129 ERSLRQAALWD-----EVKDKLKQSGLSL-----------SGGQQQRLCIARAIAVQPEV 172
Query: 824 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRL 861
+++DE +A+D + I++ + E + T++I+ H +
Sbjct: 173 ILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNM 210
|
Length = 264 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 7e-07
Identities = 49/203 (24%), Positives = 95/203 (46%), Gaps = 9/203 (4%)
Query: 683 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE--LERGRILIDGFDIAKFGLMDL- 739
L G+ + P + VG+ G GAGKS+++ L + G I G + + D
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 740 RKILGIIPQSPVLFSG-TVRFNLDPFSE--HSDADLWEALERAHLKDAIRRNSLGLDAQV 796
R + II Q L +V N+ +E + K+ +R L D
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT 136
Query: 797 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE-EFKSCTML 855
G+ + GQ+QL+ +++AL +++++L+LDE ++++ + ++ IR+ + +
Sbjct: 137 RPVGD-YGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACV 195
Query: 856 IIAHRLNTIID-CDRILLLDSGR 877
I+H+LN + CD I ++ G+
Sbjct: 196 YISHKLNEVKAVCDTICVIRDGQ 218
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 8e-07
Identities = 33/108 (30%), Positives = 62/108 (57%), Gaps = 6/108 (5%)
Query: 169 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVTNQ 226
SGGQ+QR+++ARA+ ++ + D+P SALD V QV D R ++ + G + + +++
Sbjct: 428 SGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKH-GLSYLFISHD 486
Query: 227 LHFLSQV-DRIILVHEGMVKEEGTFEDLSNN--GELFQKLMENAGKME 271
L + + R+I++ +G + E+G E + N E + L+ A +E
Sbjct: 487 LAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTRALLAAAFDIE 534
|
Length = 534 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 8e-07
Identities = 54/241 (22%), Positives = 107/241 (44%), Gaps = 49/241 (20%)
Query: 683 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI----------VEL------ERGRILI 726
LH + I + V ++G +G+GKS++L L + +EL GR+
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79
Query: 727 D--------GFDIAKFGLMDLRKIL-----GIIPQSPVLFSGTVRFNLDPFSEHSDADLW 773
D G+ +F L++ +L G + +P R F+
Sbjct: 80 DIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFW-----RTCFSWFTREQKQRAL 134
Query: 774 EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAV 833
+AL R +G+ + S GQ+Q ++++RAL++++K+++ DE A++
Sbjct: 135 QALTR-----------VGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASL 183
Query: 834 DVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890
D + ++ T+R+ + T+++ H+++ + C+RI+ L G V YD + N
Sbjct: 184 DPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVF-YDGSSQQFDN 242
Query: 891 E 891
E
Sbjct: 243 E 243
|
Length = 262 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 8e-07
Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 16/178 (8%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL- 739
PVL +S ++ + V + G +G+GKS++L +L+ + G+IL+ +DL
Sbjct: 25 PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEG----EWVDLV 80
Query: 740 ----RKILGIIPQSPVLFSGTVRF-----NLDPFSEHSDADLWEALERAHLKDAIRRNSL 790
R++L + + S +R LD +E A E A K A L
Sbjct: 81 TAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPR-EVARAKAADLLTRL 139
Query: 791 GLDAQV-SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE 847
L ++ S A FS G++Q ++++R + IL+LDE TA++D A++ + IRE
Sbjct: 140 NLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIRE 197
|
Length = 235 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 9e-07
Identities = 57/209 (27%), Positives = 101/209 (48%), Gaps = 27/209 (12%)
Query: 56 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IR 105
ER L + G ++A++G +G GK++L++A+ G + + + I
Sbjct: 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQIL 139
Query: 106 GTVAYVPQVSWIF-NATVRDNILFGSAFE-P---ARYEKAIDVTSLQHDLDLLPGGDVTE 160
+V Q ++ + TVR+ ++F S P + EK + S+ +L L + T
Sbjct: 140 KRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCEN-TI 198
Query: 161 IGE---RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 217
IG RG ISGG+++RVS+A + N + I D+P S LDA ++ G L+
Sbjct: 199 IGNSFIRG--ISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTL--GSLAQ 254
Query: 218 KTRVLVTNQLHFLSQV----DRIILVHEG 242
K + +VT+ S+V D ++++ EG
Sbjct: 255 KGKTIVTSMHQPSSRVYQMFDSVLVLSEG 283
|
Length = 659 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 63/286 (22%), Positives = 123/286 (43%), Gaps = 55/286 (19%)
Query: 70 GSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVAYVPQVSWIF 118
G +V +G G GK++ + + G LPP S + V ++ + Y+P+ + ++
Sbjct: 28 GRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLY 87
Query: 119 -NATVRDNILFGSAF-------EPARYEKAIDVTSL---QHDLDLLPGGDVTEIGERGVN 167
+ VR+ + F + R E+ I++ L QH +IG+
Sbjct: 88 LDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQH----------KKIGQ---- 133
Query: 168 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVTN 225
+S G +QRV +A+A+ + V I D+P + LD + Q+ + I+ KT +L T
Sbjct: 134 LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPN---QLVEIRNVIKNIGKDKTIILST- 189
Query: 226 QLHFLSQV----DRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDG- 280
H + +V DR+I++++G + + ++LS + +E +++ + E +
Sbjct: 190 --HIMQEVEAICDRVIIINKGKIVADKKLDELSAANKKQVIEVEFEEQIDLQLFETLEEI 247
Query: 281 ----ETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEER 322
T N ND E + K K + ++Q E+
Sbjct: 248 SSVKNTGGNTWKLTFET--PNDTRPEIFKLAQQKGLKLISLQQNEK 291
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 1e-06
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 724
I+ E++ Y +L +S TI P D++G+VGR GAGKS++L + +E + G +
Sbjct: 1 IELENLSKTY--GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 55/219 (25%), Positives = 100/219 (45%), Gaps = 26/219 (11%)
Query: 686 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR-KILG 744
LSFT+ + I+G G+GKS++ L ++E G +LID + FG R + +
Sbjct: 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLH-FGDYSYRSQRIR 90
Query: 745 IIPQSPV-----------LFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLD 793
+I Q P + +R N D E + + E L + L L
Sbjct: 91 MIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGL----------LP 140
Query: 794 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKS 851
S + GQ+Q L L+RAL+ R K+++ DEA A++D+ + + + E E +
Sbjct: 141 DHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQG 200
Query: 852 CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889
+ + + L + D++L++ G V+E + ++L+
Sbjct: 201 ISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLA 239
|
Length = 267 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 57/237 (24%), Positives = 106/237 (44%), Gaps = 38/237 (16%)
Query: 56 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYV---- 111
++ L +I + IP S+ I+G +G GK++L+ +L L + D+ + G V Y
Sbjct: 22 DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLK-VLNRLIEIYDSKIKVDGKVLYFGKDI 80
Query: 112 ---------PQVSWIFNA-------TVRDNILF---GSAFEPARYEKAIDVTSLQHDLDL 152
+V +F ++ DNI + + R K I L+
Sbjct: 81 FQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKV--- 137
Query: 153 LPGGDVTEIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 208
G E+ +R +SGGQ+QR+++ARA+ V + D+P S +D V Q +
Sbjct: 138 ---GLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDI-VNSQAIE 193
Query: 209 RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDL--SNNGELFQK 262
+ I + V+V++ +++V D + ++ G + E G+ ++ S EL +K
Sbjct: 194 KLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTEK 250
|
Length = 257 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 2e-06
Identities = 40/163 (24%), Positives = 81/163 (49%), Gaps = 29/163 (17%)
Query: 57 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------ 104
R + +++L + G +V ++G G GKT+ ++G +P DA +I
Sbjct: 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDISLLPLH 73
Query: 105 ---RGTVAYVPQVSWIFNA-TVRDNILFGSAFEPARYEKAIDVTSLQHD---LDLLPGGD 157
R + Y+PQ + IF +V DN++ A + D+++ Q + +L+
Sbjct: 74 ARARRGIGYLPQEASIFRRLSVYDNLM-------AVLQIRDDLSAEQREDRANELMEEFH 126
Query: 158 VTEIGER-GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 199
+ + + G ++SGG+++RV +ARA+ +N + D+P + +D
Sbjct: 127 IEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVD 169
|
Length = 241 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 2e-06
Identities = 57/213 (26%), Positives = 108/213 (50%), Gaps = 22/213 (10%)
Query: 689 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG---FDIAK--FGLMDLRKIL 743
T+P I GR+GAGK+S++N + + ++GRI+++G FD K + R+I
Sbjct: 20 TLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRI- 78
Query: 744 GIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 802
G + Q LF VR NL S ++ + LG++ + +
Sbjct: 79 GYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVAL----------LGIEPLLDRYPGS 128
Query: 803 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDV-RTDALIQ--KTIREEFKSCTMLIIAH 859
S G++Q +++ RALL ++L++DE A++D+ R L+ + + E +L ++H
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREIN-IPILYVSH 187
Query: 860 RLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 891
L+ I+ DR+++L+ G+V + EE+ ++
Sbjct: 188 SLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220
|
Length = 352 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 47/208 (22%), Positives = 100/208 (48%), Gaps = 38/208 (18%)
Query: 56 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGEL-PPVSDASAVI-RGTVAYV 111
++ L +++LD + A++G +G GK++L+ ++ + +L P V+ +++ G Y
Sbjct: 17 KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYS 76
Query: 112 PQVSWI---------------FNATVRDNILFGSAFEPARYEKAIDV---TSLQHDLDLL 153
P+ + F ++ +N+++G + + ++ +D SL+
Sbjct: 77 PRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLK------ 130
Query: 154 PGGDV-TEIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 208
G + E+ +R + +SGGQ+QRV +AR + ++ + + D+P SALD ++ +
Sbjct: 131 -GASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKI-E 188
Query: 209 RCIRGELSGKTRVLVTNQLHFLSQVDRI 236
+ G T +LVT + Q RI
Sbjct: 189 ETLLGLKDDYTMLLVT---RSMQQASRI 213
|
Length = 252 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 50/205 (24%), Positives = 98/205 (47%), Gaps = 32/205 (15%)
Query: 55 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPVS--DASAVIRGTVAY 110
++ + N+NLD+ G++ A++G +G GKT+ + A+ + +L P + ++ G Y
Sbjct: 15 GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIY 74
Query: 111 VP---------QVSWIFNA-------TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLP 154
P +V +F +V DN++ G R + ++ L
Sbjct: 75 GPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHL----MEVAERSLR 130
Query: 155 GGDV-TEIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 209
G + E+ +R +SGGQ+QR+ +ARA+ ++ + D+P SALD ++ D
Sbjct: 131 GAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIED- 189
Query: 210 CIRGELSGKTR-VLVTNQLHFLSQV 233
+ +L T ++VT+ +H ++V
Sbjct: 190 -LMTDLKKVTTIIIVTHNMHQAARV 213
|
Length = 252 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 48/164 (29%), Positives = 81/164 (49%), Gaps = 31/164 (18%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPVS------------------DAS 101
++NL+I S+ A +G +G GK++++ + + E+ P + D
Sbjct: 22 DVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81
Query: 102 AVIRGTVAYVPQVSWIFNA-TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDV-T 159
AV R T+ V Q F ++RDN++ G R +K +D + L G ++
Sbjct: 82 AV-RRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKS----LRGANLWN 136
Query: 160 EIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 199
E+ +R G +SGGQ+QR+ +ARA+ DV + D+P SALD
Sbjct: 137 EVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 2e-06
Identities = 65/221 (29%), Positives = 109/221 (49%), Gaps = 44/221 (19%)
Query: 689 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQ 748
TI P KVG+VG+ G GKS++L L + I DG + ++ + +
Sbjct: 23 TINPGQKVGLVGKNGCGKSTLLALL-------KNEISADG---GSYTFPGNWQLAWVNQE 72
Query: 749 SPVLFSGTVRFNLDPFSEHS--DADLWEALER------AHLK---DAI-------RRNSL 790
+P L + + +D E+ +A L +A ER A + DAI R SL
Sbjct: 73 TPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASL 132
Query: 791 --GL---DAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI--QK 843
GL + Q+ +FS G R L+L++AL+ RS +L+LDE T +D+ DA+I +K
Sbjct: 133 LHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDL--DAVIWLEK 190
Query: 844 TIREEFKSCTMLIIAHR---LNTIIDCDRILLLDSGRVLEY 881
++ T+++I+H L+ I+ D+I+ ++ + EY
Sbjct: 191 WLKS--YQGTLILISHDRDFLDPIV--DKIIHIEQQSLFEY 227
|
Length = 638 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 2e-06
Identities = 50/207 (24%), Positives = 91/207 (43%), Gaps = 18/207 (8%)
Query: 686 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-RGRILIDGFDIAKFGLMDL----- 739
+SF++ + +G+ G GAG++ ++ LF + G + I+G +
Sbjct: 279 VSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGI 338
Query: 740 ------RKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLD 793
RK GI+P V + T+ L F D A E + AI+R +
Sbjct: 339 AMVPEDRKRHGIVPILGVGKNITLS-VLKSFCFKMRID--AAAELQIIGSAIQRLKVKTA 395
Query: 794 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE-EFKSC 852
+ G S G +Q L++ LL ++L+LDE T VDV I K I + +
Sbjct: 396 SPFLPIG-RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGV 454
Query: 853 TMLIIAHRLNTIID-CDRILLLDSGRV 878
+++++ L ++ DR+L++ G++
Sbjct: 455 AIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 51/224 (22%), Positives = 97/224 (43%), Gaps = 30/224 (13%)
Query: 686 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745
LS + + + +VG GAGKS++L + ++ G I G + + +L +
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGS-GSIQFAGQPLEAWSAAELARHRAY 73
Query: 746 IPQ--SPVLFSGTVRFNLDPF---SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 800
+ Q +P F + F + H + L + LGLD ++ +
Sbjct: 74 LSQQQTPP-------FAMPVFQYLTLHQPDKTRTEAVASALNEVAEA--LGLDDKLGRSV 124
Query: 801 ENFSVGQRQLLSLSRALLR-------RSKILVLDEATAAVDVRTDALIQKTIREEFKSC- 852
S G+ Q + L+ +L+ ++L+LDE ++DV A + + + E C
Sbjct: 125 NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSE---LCQ 181
Query: 853 ---TMLIIAHRLN-TIIDCDRILLLDSGRVLEYDTPEELLSNEG 892
+++ +H LN T+ DR+ LL G++L +E+L+ E
Sbjct: 182 QGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPEN 225
|
Length = 248 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 51/217 (23%), Positives = 85/217 (39%), Gaps = 52/217 (23%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL-FRIVELER--GRILIDGFDIAKFGLM 737
P+L S + P + V ++GR G+G S++L L R G I +G +F
Sbjct: 21 PILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAE- 79
Query: 738 DLRKILGIIPQSPVLFSG---------TVRFNLDPFSEHSDADLWEALERAHLKDAIRRN 788
+++ TVR LD F+
Sbjct: 80 --------KYPGEIIYVSEEDVHFPTLTVRETLD-FA----------------------- 107
Query: 789 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE- 847
L + +E S G+R+ +S++ AL+ R+ +L D +T +D T I K IR
Sbjct: 108 ---LRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTM 164
Query: 848 --EFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEY 881
K+ T + + + I D D++L+L GR + Y
Sbjct: 165 ADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYY 201
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 2e-06
Identities = 58/232 (25%), Positives = 106/232 (45%), Gaps = 32/232 (13%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFN 119
L NI+ ++P G +V I+G G GK++L + + G P + + I+G+ A + S +
Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMP-NKGTVDIKGSAALIAISSGLNG 98
Query: 120 A-TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI-------SGG 171
T +NI EK ++ ++ E + G I S G
Sbjct: 99 QLTGIENIELKGLMMGLTKEKIKEIIP-----------EIIEFADIGKFIYQPVKTYSSG 147
Query: 172 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS 231
K R+ A +V+ N D+ + D+ LS D ++ D+ + GKT ++ H LS
Sbjct: 148 MKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFIS---HSLS 204
Query: 232 QVD----RIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKED 279
QV + + +H G VKE G +++ ++ + + ++ +M VEE++D
Sbjct: 205 QVKSFCTKALWLHYGQVKEYGDIKEVVDH---YDEFLKKYNQMS--VEERKD 251
|
Length = 549 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 63/278 (22%), Positives = 116/278 (41%), Gaps = 55/278 (19%)
Query: 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--- 98
+ R+ +S+ E L IN G +VA++G G GK++L G L P S
Sbjct: 2 LETRDLKYSYPDGTE--ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59
Query: 99 ---------DASAVI--RGTVAYVPQVS--WIFNATVRDNILFGSAFEPARYEKAIDVTS 145
D +++ R TV V Q +F TV +++ FG
Sbjct: 60 LIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGP--------------- 104
Query: 146 LQHDLDL-LPGGDVTE--------IGERGV------NISGGQKQRVSMARAVYSNSDVFI 190
L+L L +V + +G G ++SGGQK+RV++A + ++ +
Sbjct: 105 ----LNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIV 160
Query: 191 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGT 249
D+P S LD Q+ G T ++ T+ + + D++ ++ +G + +EGT
Sbjct: 161 LDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGT 220
Query: 250 FEDLSNNGELFQKLMENAGKMEEYVE--EKEDGETVDN 285
+++ ++ E +K ++ +E KED +
Sbjct: 221 PKEVFSDIETIRKANLRLPRVAHLIEILNKEDNLPIKM 258
|
Length = 275 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 3e-06
Identities = 53/219 (24%), Positives = 98/219 (44%), Gaps = 30/219 (13%)
Query: 63 INLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPVSDASA-----------------V 103
+N DI + AI+G +G GK++ + A+ + +L P + +
Sbjct: 58 VNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVL 117
Query: 104 IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGE 163
+R + V Q F ++ DNI +G +K ++ + L E+ +
Sbjct: 118 LRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEK---SLRKAALWDEVSD 174
Query: 164 R----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK- 218
R + +SGGQ+QR+ +AR + ++ + D+P SALD ++ D + EL G
Sbjct: 175 RLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIED--LIQELRGSY 232
Query: 219 TRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 256
T ++VT+ + S+V D + +EG++ E L N
Sbjct: 233 TIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTN 271
|
Length = 286 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 57/244 (23%), Positives = 96/244 (39%), Gaps = 51/244 (20%)
Query: 41 AISIRNGYFSWDSKAERPTLLN-INLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELP--- 95
+S + K + T+LN ++L + G VA++G +G GK++L ++G E P
Sbjct: 8 GLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQG 67
Query: 96 -------PVS----DASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVT 144
P++ R + V Q D+I SA P + + I
Sbjct: 68 NVSWRGEPLAKLNRAQRKAFRRDIQMVFQ----------DSI---SAVNPRKTVREIIRE 114
Query: 145 SLQHDLDLLPGGDVTEIGE--------------RGVNISGGQKQRVSMARAVYSNSDVFI 190
L+H L L + E R +SGGQ QRV +ARA+ + I
Sbjct: 115 PLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLI 174
Query: 191 FDDPLSALDAHVGRQVFDRCIR-GELSGKTRVLVTNQLHFLSQVD----RIILVHEGMVK 245
D+ +S LD + V + + G + +T H L V+ R++++ G +
Sbjct: 175 LDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFIT---HDLRLVERFCQRVMVMDNGQIV 231
Query: 246 EEGT 249
E
Sbjct: 232 ETQP 235
|
Length = 268 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 3e-06
Identities = 63/231 (27%), Positives = 105/231 (45%), Gaps = 26/231 (11%)
Query: 670 DVVLR------YRPELP--PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LE 720
+V+L + P P + +SF++ + +GI G GAG++ ++ LF
Sbjct: 257 EVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRW 316
Query: 721 RGRILIDGFDIA--------KFGLMDL---RKILGIIPQSPVLFSGTVRFNLDPFSEHSD 769
G I IDG + G+ + RK GI+P V + T+ LD F+ S
Sbjct: 317 EGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLA-ALDRFTGGSR 375
Query: 770 ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEA 829
D +A E + ++I+R + A A S G +Q L++ LL KIL+LDE
Sbjct: 376 ID--DAAELKTILESIQRLKVKT-ASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEP 432
Query: 830 TAAVDVRTDALIQKTIREEFKSCTMLI-IAHRLNTIID-CDRILLLDSGRV 878
T +DV I K I + + +I I+ L ++ DR+L++ G++
Sbjct: 433 TRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKL 483
|
Length = 506 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 3e-06
Identities = 62/199 (31%), Positives = 86/199 (43%), Gaps = 64/199 (32%)
Query: 685 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR-IVELER---GRILIDGFDIAKFGLMDLR 740
LSF++PP VGI+G GAGKS TLF+ I E+ G I I G + K +D
Sbjct: 342 DLSFSLPPGGIVGIIGPNGAGKS----TLFKMITGQEQPDSGTIKI-G-ETVKLAYVD-- 393
Query: 741 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALE---------------RAHLKDAI 785
QS R LDP + +WE + RA++
Sbjct: 394 -------QS--------RDALDP-----NKTVWEEISGGLDIIKVGNREIPSRAYVG--- 430
Query: 786 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-----DAL 840
R N G D Q + G S G+R L L++ L + +L+LDE T +DV T +AL
Sbjct: 431 RFNFKGGDQQ-KKVG-VLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEAL 488
Query: 841 IQKTIREEFKSCTMLIIAH 859
EF C + +I+H
Sbjct: 489 ------LEFPGCAV-VISH 500
|
Length = 556 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 63/235 (26%), Positives = 109/235 (46%), Gaps = 27/235 (11%)
Query: 680 PPVLHGLSFTIPPSDKVGIVGRTGAGKS----SMLNTLFRIVELERGRILIDGFDIAKFG 735
P++HG+S T+ + +VG +G+GKS + L L V GR+L+DG +A
Sbjct: 16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCA 75
Query: 736 LMDLRKILGII--PQS---PVLFSGT-VRFNLDPFSEHS-DADLWEALERAHLKDAIRRN 788
L RKI I+ P+S P+ T R + + DA L ALE L++A R
Sbjct: 76 LRG-RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARV- 133
Query: 789 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA----LIQKT 844
L E S G Q + ++ ALL + ++ DE T +DV A L++
Sbjct: 134 ---LKLYPFE----MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESI 186
Query: 845 IREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSNEGSSFSKM 898
+++ ++ ML++ H + + D + ++ GR++E E L + + ++
Sbjct: 187 VQK--RALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKHAVTRS 239
|
Length = 254 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 3e-06
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 23/129 (17%)
Query: 135 ARYEKAIDVTSL------QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 188
R ++AID+ + LD+ P +SGG QRV +A A+ +
Sbjct: 126 TRRQRAIDLLNQVGIPDPASRLDVYPH-----------QLSGGMSQRVMIAMAIACRPKL 174
Query: 189 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTR---VLVTNQLHFLSQV-DRIILVHEGMV 244
I D+P +ALD + Q+ + + EL K VL+T+ L +++ +II+++ G V
Sbjct: 175 LIADEPTTALDVTIQAQIIELLL--ELQQKENMALVLITHDLALVAEAAHKIIVMYAGQV 232
Query: 245 KEEGTFEDL 253
E G D+
Sbjct: 233 VETGKAHDI 241
|
Length = 326 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 4e-06
Identities = 56/230 (24%), Positives = 108/230 (46%), Gaps = 35/230 (15%)
Query: 686 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRKILG 744
+SF++ + +G G G+G++ ++N LF + + G I ++G DI+ +D ++K +
Sbjct: 282 ISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMA 341
Query: 745 IIPQS-------------------PVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 785
I +S L G + + F E + E +R L A+
Sbjct: 342 YITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAEN-QRELL--AL 398
Query: 786 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 845
+ +S+ + ++E S G +Q + +S+ L ++++ DE T +DV A I K +
Sbjct: 399 KCHSV--NQNITE----LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVM 452
Query: 846 R---EEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 891
R ++ K +L+++ L II CDRI + GR+ + T + +S E
Sbjct: 453 RQLADDGK--VILMVSSELPEIITVCDRIAVFCEGRLTQILTNRDDMSEE 500
|
Length = 510 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 4e-06
Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 23/208 (11%)
Query: 683 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRK 741
L +SF ++G GAGKS++L L + + G ILIDG ++ L
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA 79
Query: 742 ILGIIPQ----SPVLFSGTVRFNLD----PFSEHSDADLWEALERAHLKDAIRRNSLGLD 793
+ II Q P + TV NL P H + L ++ + LG+D
Sbjct: 80 GVAIIYQELHLVPEM---TVAENLYLGQLP---HKGGIVNRRLLNYEAREQLEH--LGVD 131
Query: 794 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR-TDAL--IQKTIREEFK 850
+ S+GQRQ++ +++AL R ++++ DE T+++ R + L + + +R E +
Sbjct: 132 IDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGR 191
Query: 851 SCTMLIIAHRLNTIID-CDRILLLDSGR 877
+L ++HR+ I CD I + GR
Sbjct: 192 --VILYVSHRMEEIFALCDAITVFKDGR 217
|
Length = 501 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 5e-06
Identities = 70/277 (25%), Positives = 120/277 (43%), Gaps = 38/277 (13%)
Query: 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTS---LISAMLGELPPV- 97
+ + N F ++ +++ L ++ I G V+I+G G GK++ LI + E
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 98 --------SDASAVIRGTVAYVPQV--SWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 147
++ +R + V Q + ATV D++ FG + E+ I +
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIK----R 120
Query: 148 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 207
D LL + +SGGQKQRV++A + ++ I D+ S LD GRQ
Sbjct: 121 VDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDP-TGRQEI 179
Query: 208 DRCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEE-------GTFEDLSNNG 257
R I E+ K ++ V + H L + DRI+++ G + +E T ED+ G
Sbjct: 180 MRVIH-EIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSEDMVEIG 238
Query: 258 -------ELFQKLMENAGKM-EEYVEEKEDGETVDNK 286
L + L +N + E+Y+ E E E + +K
Sbjct: 239 LDVPFSSNLMKDLRKNGFDLPEKYLSEDELVELLADK 275
|
Length = 277 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 5e-06
Identities = 59/219 (26%), Positives = 97/219 (44%), Gaps = 55/219 (25%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 741
VL+ L IP V +VGR+G GKS TL R L+ G + G
Sbjct: 27 VLNQLDLHIPAGQFVAVVGRSGCGKS----TLLR---------LLAGLETPSAG------ 67
Query: 742 ILGIIPQSPVLFSGTVRFNLDPFSE--------HSDADL--WEAL-------ERAHLKDA 784
L +GT P +E DA L W+ + + +DA
Sbjct: 68 ---------ELLAGTA-----PLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDA 113
Query: 785 IRR--NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 842
+ ++GL + +E S GQ+Q ++L+RAL+ R +L+LDE A+D T +Q
Sbjct: 114 ALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQ 173
Query: 843 KTIREEFKS--CTMLIIAHRLNTIID-CDRILLLDSGRV 878
I ++ T+L++ H ++ + DR+LL++ G++
Sbjct: 174 DLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 5e-06
Identities = 20/38 (52%), Positives = 29/38 (76%)
Query: 169 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 206
SGGQ+QR+++ARA+ + DV + D+P+SALD V QV
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQV 193
|
Length = 327 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 5e-06
Identities = 53/224 (23%), Positives = 99/224 (44%), Gaps = 43/224 (19%)
Query: 678 ELPPV--LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG----FDI 731
P V L ++ + P ++G GAGKS++L LF I + + G IL G F
Sbjct: 7 SFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKS 66
Query: 732 AKFGLMD----LRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLK----- 782
+K L + + + L ++ Q V+ ++W L R K
Sbjct: 67 SKEALENGISMVHQELNLVLQRSVM-----------------DNMW--LGRYPTKGMFVD 107
Query: 783 -DAIRRNS------LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 835
D + R++ L +D SV Q Q++ +++A +KI+++DE T+++
Sbjct: 108 QDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTE 167
Query: 836 RTDALIQKTIRE-EFKSCTMLIIAHRLNTIID-CDRILLLDSGR 877
+ + IR+ + + C ++ I+H++ I CD I +L G+
Sbjct: 168 KEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQ 211
|
Length = 491 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 5e-06
Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 27/174 (15%)
Query: 684 HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 743
GLSFT+ + V I G GAGK+S+L L + + G +L G I + + +L
Sbjct: 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLL 77
Query: 744 ------GIIPQSPVLFSGT----VRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLD 793
GI L T +RF D LWEAL + L D
Sbjct: 78 YLGHQPGI---KTEL---TALENLRFYQRLHGPGDDEALWEALAQVGLA---GF----ED 124
Query: 794 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE 847
V S GQ++ ++L+R L R+ + +LDE A+D + A ++ + +
Sbjct: 125 VPVR----QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQ 174
|
Length = 204 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 6e-06
Identities = 46/235 (19%), Positives = 89/235 (37%), Gaps = 38/235 (16%)
Query: 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-- 98
A+ + F + R L +++ + G VA++G G GK++L S +
Sbjct: 1 ALEVAGLSFRY---GARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQ 57
Query: 99 ----------DASAVIRGTVAYVPQVSWIFNATVRDNILF-------GSAFEPARYEKAI 141
A + Q + + +VR N+ + A AR + +
Sbjct: 58 ISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELL 117
Query: 142 DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 201
L D ++ ++GG ++RV +ARA+ + + D+P LD
Sbjct: 118 ARLGLAERAD-----------DKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPA 166
Query: 202 VGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDL 253
R +R L+ + V H + ++ DR++++H G V +G +L
Sbjct: 167 -SRAAITAHVR-ALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAEL 219
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 6e-06
Identities = 65/224 (29%), Positives = 102/224 (45%), Gaps = 39/224 (17%)
Query: 39 LPAISIRNGYFSWD-SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELP 95
+PAI +++ F ++ SKA + I++DI + AI+G +G GK++ I + + EL
Sbjct: 5 IPAIKVKDLSFYYNTSKA----IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELE 60
Query: 96 -PVSDASAV-IRGTVAYVP---------QVSWIFNATVRDNILFGSAFEPARYEKAIDVT 144
PV V G Y P Q+ +F R N S +E Y I
Sbjct: 61 GPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQ---RPNPFPMSIYENVAYGVRISAK 117
Query: 145 SLQHDLD-----LLPGGDV-----TEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDP 194
Q DLD L G + ++ + + +SGGQ+QR+ +ARA+ V + D+P
Sbjct: 118 LPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEP 177
Query: 195 LSALDAHVGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQVDRI 236
SALD +V + +R EL T +VT H + Q R+
Sbjct: 178 CSALDPIATMKVEELIHSLRSEL---TIAIVT---HNMQQATRV 215
|
Length = 259 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (115), Expect = 7e-06
Identities = 52/228 (22%), Positives = 100/228 (43%), Gaps = 39/228 (17%)
Query: 55 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM------------LGELPPVSDASA 102
A + L +++ P ++ +++G TG GKT+ + + G++ +
Sbjct: 32 AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIF 91
Query: 103 VIRGTVAYVPQVSWIFN------ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGG 156
R + + +V +F ++ DN+L G R K + + + +
Sbjct: 92 NYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAG-----VRAHKLVP----RKEFRGVAQA 142
Query: 157 DVTEIG----------ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 206
+TE+G + +SGGQ+Q + +AR + N +V + D+P SALD ++
Sbjct: 143 RLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKI 202
Query: 207 FDRCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDL 253
+ IR T ++VT+ L +++ DR L +G + EEG E L
Sbjct: 203 -EEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQL 249
|
Length = 276 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 8e-06
Identities = 58/262 (22%), Positives = 115/262 (43%), Gaps = 44/262 (16%)
Query: 666 IKFEDVVLRYRPELP---PVLHGLSFTIPPSDKVGIVGRTGAGKSSM---LNTLF----- 714
IK +++V + +LP L +S I + + I+G+TG+GK++ LN L
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 715 ---------------RIVELERGRILIDGFDIAKF-GLMDLRKILGIIPQ--SPVLFSGT 756
+ E +++I K + ++R+ +G++ Q LF T
Sbjct: 63 TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQT 122
Query: 757 VRFNL--DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGE-NFSVGQRQLLSL 813
+ ++ P S + EA +RA I +GLD + S GQ++ ++L
Sbjct: 123 IEKDIIFGPVSMGVSKE--EAKKRA--AKYIEL--VGLDESYLQRSPFELSGGQKRRVAL 176
Query: 814 SRALLRRSKILVLDEATAAVD---VRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDR 869
+ L LV DE TA +D V+ I + ++ K T++++ H L+ +++ R
Sbjct: 177 AGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGK--TIILVTHDLDNVLEWTKR 234
Query: 870 ILLLDSGRVLEYDTPEELLSNE 891
+ G++++ ++LS+
Sbjct: 235 TIFFKDGKIIKDGDTYDILSDN 256
|
Length = 305 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 8e-06
Identities = 51/259 (19%), Positives = 111/259 (42%), Gaps = 22/259 (8%)
Query: 645 SEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGA 704
+ + + ++ R R L L +S P + + ++G +GA
Sbjct: 6 RNSDVFGRVAQDGSWKQLVSRLRGCFCRERPRKHL---LKNVSGVAKPGELLAVMGSSGA 62
Query: 705 GKSSMLNTL-FRIVE-LER-GRILIDGFDIAKFGLMDLRKILGIIPQSPVLF-SGTVRFN 760
GK++++N L FR + ++ G +L++G ++R I + Q + + TVR +
Sbjct: 63 GKTTLMNALAFRSPKGVKGSGSVLLNG---MPIDAKEMRAISAYVQQDDLFIPTLTVREH 119
Query: 761 LDPFSEH--SDADLWEALERAHLKDAIRRNSLGLDAQVSEAG-----ENFSVGQRQLLSL 813
L F H + + +R + + ++ L + G + S G+R+ L+
Sbjct: 120 LM-FQAHLRMPRRVTKKEKRERVDEVLQALGL-RKCANTRIGVPGRVKGLSGGERKRLAF 177
Query: 814 SRALLRRSKILVLDEATAAVDVRTDALIQKTIRE-EFKSCTMLIIAHRLNTIIDC--DRI 870
+ LL +L DE T+ +D + + ++ K T++ H+ ++ + D+I
Sbjct: 178 ASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKI 237
Query: 871 LLLDSGRVLEYDTPEELLS 889
+L+ GRV +P++ +
Sbjct: 238 ILMAEGRVAYLGSPDQAVP 256
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 8e-06
Identities = 55/206 (26%), Positives = 93/206 (45%), Gaps = 35/206 (16%)
Query: 73 VAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIRGTVAYVPQ-------------- 113
+AI+G G GK++L + G + P S D + G +Y Q
Sbjct: 42 LAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLN 101
Query: 114 ----VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNIS 169
+S I + +R N + EP + EK I T Q + LLP ++
Sbjct: 102 PRQRISQILDFPLRLN----TDLEPEQREKQIIETLRQ--VGLLP----DHASYYPHMLA 151
Query: 170 GGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-GELSGKTRVLVTNQLH 228
GQKQR+ +ARA+ V I D+ L++LD + Q+ + + E G + + VT L
Sbjct: 152 PGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG 211
Query: 229 FLSQV-DRIILVHEGMVKEEGTFEDL 253
+ + D+++++H+G V E G+ D+
Sbjct: 212 MMKHISDQVLVMHQGEVVERGSTADV 237
|
Length = 267 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 9e-06
Identities = 57/215 (26%), Positives = 100/215 (46%), Gaps = 33/215 (15%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 740
P L ++ T+ + + ++G +G GK+++LN + V + G I +DG + G R
Sbjct: 15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAE--R 72
Query: 741 KIL----GIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQV 796
++ G++P V V F L + + + + LE AH +++ L
Sbjct: 73 GVVFQNEGLLPWRNVQ--DNVAFGL----QLAGVEKMQRLEIAH--QMLKKVGL------ 118
Query: 797 SEAGENF----SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT----DALIQKTIREE 848
A + + S GQRQ + ++RAL ++L+LDE A+D T L+ K +E
Sbjct: 119 EGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQET 178
Query: 849 FKSCTMLIIAHRLNTIIDCDRILLLDS---GRVLE 880
K +L+I H + + L+L S GRV+E
Sbjct: 179 GKQ--VLLITHDIEEAVFMATELVLLSPGPGRVVE 211
|
Length = 255 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 9e-06
Identities = 50/192 (26%), Positives = 80/192 (41%), Gaps = 48/192 (25%)
Query: 64 NLDIPV-GSLVAIVGGTGEGKTSLISAMLGELPP-------VSDASAVI---RGT----- 107
L P G +V I+G G GK++ + + GEL P VI RGT
Sbjct: 93 RLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNY 152
Query: 108 --------------VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLL 153
YV + + V + L E ++++ ++ L++ LD
Sbjct: 153 FKKLYEGELRAVHKPQYVDLIPKVVKGKVGE--LLKKVDERGKFDEVVERLGLENVLD-- 208
Query: 154 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCI 211
++ E +SGG+ QRV++A A+ ++DV+ FD+P S LD RQ + R I
Sbjct: 209 -----RDVSE----LSGGELQRVAIAAALLRDADVYFFDEPSSYLDI---RQRLNAARVI 256
Query: 212 RGELSGKTRVLV 223
R V+V
Sbjct: 257 RELAEDGKYVIV 268
|
Length = 591 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 9e-06
Identities = 60/218 (27%), Positives = 99/218 (45%), Gaps = 32/218 (14%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNAT 121
NI+L +P S+ ++G G GK++L+ + G L P S + G W T
Sbjct: 18 NISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTS-GEIIFDGH-------PW----T 65
Query: 122 VRDNILFGSAFE-PARYEK--AID----VTSLQH-----DLDLLPGGDVTEIGERGV-NI 168
+D GS E P YE A + T+L ++L D+T G++
Sbjct: 66 RKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQF 125
Query: 169 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLH 228
S G KQR+ +A A+ ++ + I D+P + LD +G Q IR V++++ H
Sbjct: 126 SLGMKQRLGIAIALLNHPKLLILDEPTNGLDP-IGIQELRELIRSFPEQGITVILSS--H 182
Query: 229 FLSQV----DRIILVHEGMVKEEGTFEDLSNNGELFQK 262
LS+V D I ++ EG++ +G N +LF +
Sbjct: 183 ILSEVQQLADHIGIISEGVLGYQGKINKSENLEKLFVE 220
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 1e-05
Identities = 65/272 (23%), Positives = 116/272 (42%), Gaps = 52/272 (19%)
Query: 26 EKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTS 85
E + P G P + +RN S K +++ + G ++ I G G G+T
Sbjct: 248 EDLFPEPPEEGIGEPVLEVRN--LSGGGKVR-----DVSFTVRAGEILGIAGLVGAGRTE 300
Query: 86 LISAMLGELPPVSDASAVIRGT--------------VAYVP---QVSWIF-NATVRDNIL 127
L A+ G P S ++ G +AYVP + + + ++ +NI
Sbjct: 301 LARALFG-ARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENIT 359
Query: 128 FGS-------AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 180
S R E+A+ L + IG +SGG +Q+V +AR
Sbjct: 360 LASLRRFSRRGLIDRRKERAL-AERYIRRLRIKTPSPEQPIG----TLSGGNQQKVVLAR 414
Query: 181 AVYSNSDVFIFDDPLSALDAHVG--RQVFDRCIRGELS--GKTRVLVTNQLHFLSQV-DR 235
+ ++ V I D+P +D VG +++ R IR EL+ GK ++++++L L + DR
Sbjct: 415 WLATDPKVLILDEPTRGID--VGAKAEIY-RLIR-ELAAEGKAILMISSELPELLGLSDR 470
Query: 236 IILVHEGMVKEEGTFEDLSNNGELFQKLMENA 267
I+++ EG + E E+ + + +M A
Sbjct: 471 ILVMREGRIVGELDREEAT-----EEAIMAAA 497
|
Length = 500 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 40/191 (20%)
Query: 42 ISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 100
I++ N ++ + LL N++L + G + +VG G GK++L+ + GEL P D+
Sbjct: 4 ITLENLSLAYGDR----PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DS 57
Query: 101 SAVIRG---TVAYVPQVSWIF-NATVRDNILFGSAFEP-----ARYEKAID--------- 142
V R V Y+ Q + TV D ++ F A E+A
Sbjct: 58 GEVTRPKGLRVGYLSQEPPLDPEKTVLDYVI--EGFGELRELLAELEEAYALLADPDDEL 115
Query: 143 VTSLQHDLDLLPGGDV-TEIGE--RGVNI----------SGGQKQRVSMARAVYSNSDVF 189
+ L+ L+ L G + E G+ SGG ++RV++ARA+ D+
Sbjct: 116 LAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLL 175
Query: 190 IFDDPLSALDA 200
+ D+P + LD
Sbjct: 176 LLDEPTNHLDL 186
|
Length = 530 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 1e-05
Identities = 51/255 (20%), Positives = 98/255 (38%), Gaps = 43/255 (16%)
Query: 30 LPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA 89
+ PP T G + + + S + + +++ ++ G +V I G G G++ L+ A
Sbjct: 246 VVKPPSTPGEVVLEVED--LSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEA 303
Query: 90 MLGELPPVS--------------DASAVIRGTVAYVP----QVSWIFNATVRDNILFGSA 131
+ G P S R +AYVP + + ++ +N++ G
Sbjct: 304 ISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRH 363
Query: 132 FEPARYEKAI--------DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 183
+ L + D+ ++SGG +Q++ +AR +
Sbjct: 364 DKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPAR----SLSGGNQQKLILARELA 419
Query: 184 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-----SGKTRVLVTNQLHFLSQV-DRII 237
D+ I P LD VG F I L +GK +L++ L + ++ DRI
Sbjct: 420 RRPDLLIAAQPTRGLD--VGAIEF---IHERLLELRDAGKAVLLISEDLDEILELSDRIA 474
Query: 238 LVHEGMVKEEGTFED 252
+++EG + E+
Sbjct: 475 VIYEGRIVGIVPPEE 489
|
Length = 501 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Query: 169 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVTNQ 226
SGGQ+QRV +A A+ + D+ I D+P +ALD V Q+ D + ++ EL G + +T+
Sbjct: 159 SGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAEL-GMAILFITHD 217
Query: 227 LHFLSQV-DRIILVHEGMVKEEGTFEDL 253
L + + DR+ ++ G + E GT E L
Sbjct: 218 LGIVRKFADRVYVMQHGEIVETGTTETL 245
|
Length = 534 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 1e-05
Identities = 46/227 (20%), Positives = 93/227 (40%), Gaps = 33/227 (14%)
Query: 55 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLIS---------AMLGELPPVSDASA--- 102
++ L +IN+ I + A++G +G GK++ + A + L +
Sbjct: 13 GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQ 72
Query: 103 ---VIRGTVAYVPQVSWIFNATVRDNILFGSAF---------EPARYEKAIDVTSLQHDL 150
+R V V Q +F ++ +NI + E A + L ++
Sbjct: 73 DVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEV 132
Query: 151 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 210
++ + + +SGGQ+QR+ +ARA+ + + D+P SALD + V +
Sbjct: 133 K-------DKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDP-ISSGVIEEL 184
Query: 211 IRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 256
++ + ++VT+ + +V D H G + E G ++ N
Sbjct: 185 LKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231
|
Length = 246 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 1e-05
Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 9/108 (8%)
Query: 103 VIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 162
V+R + V Q F+ ++ DN+ FG RY K ++H L D E+
Sbjct: 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLN--RY-KGDLGDRVKHALQGAALWD--EVK 140
Query: 163 ER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 206
++ G+++SGGQ+QR+ +ARA+ + +V + D+P SALD R+V
Sbjct: 141 DKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRV 188
|
Length = 261 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 1e-05
Identities = 47/187 (25%), Positives = 68/187 (36%), Gaps = 54/187 (28%)
Query: 66 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDN 125
+ G ++ IVG G GKT+ + + G+L P D T Y PQ
Sbjct: 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQ------------ 68
Query: 126 ILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 185
ID L GG++ QRV++A A+ N
Sbjct: 69 --------------YID----------LSGGEL---------------QRVAIAAALLRN 89
Query: 186 SDVFIFDDPLSALDAHVGRQVFDRCIR--GELSGKTRVLVTNQLHFLSQVDRIILVHEGM 243
+ ++FD+P + LD R R IR E KT ++V + L L + I V EG
Sbjct: 90 ATFYLFDEPSAYLDIE-QRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGE 148
Query: 244 VKEEGTF 250
G
Sbjct: 149 PGVYGIA 155
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 53/204 (25%), Positives = 87/204 (42%), Gaps = 51/204 (25%)
Query: 683 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF--RIVELERGRILIDGFDIAKFGLMDLR 740
L+ +S + P ++G +GAGK+++L+ L + + G ILI+G + K + +
Sbjct: 23 LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDK----NFQ 78
Query: 741 KILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEA 799
+ G + Q V TVR EAL +R GL
Sbjct: 79 RSTGYVEQQDVHSPNLTVR---------------EALR---FSALLR----GL------- 109
Query: 800 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS-----CTM 854
SV QR+ L++ L + IL LDE T+ +D + I + +++ S CT+
Sbjct: 110 ----SVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTI 165
Query: 855 LIIAHRLNTII--DCDRILLLDSG 876
H+ + I DR+LLL G
Sbjct: 166 ----HQPSASIFEKFDRLLLLKRG 185
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 1e-05
Identities = 40/169 (23%), Positives = 77/169 (45%), Gaps = 36/169 (21%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLISAM------------LGELPPVSDASAV---- 103
L NIN+ + + A++G +G GK++ + GE+ D +
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91
Query: 104 -----IRGTVAYVPQVSWIFNATVRDNILFG--------SAFEPARYEKAIDVTSLQHDL 150
+R ++ V Q F ++ +N+ +G + R E A+ +L ++
Sbjct: 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEV 151
Query: 151 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 199
+G+ N+SGGQ+QR+ +ARA+ ++ ++ +FD+P SALD
Sbjct: 152 K-------DRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALD 193
|
Length = 265 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 2e-05
Identities = 55/221 (24%), Positives = 98/221 (44%), Gaps = 60/221 (27%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD--ASAVIRGTVA------YV 111
L +++DIP S+ A++G +G GK S L L ++D +A I G+V Y
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGK----STFLRCLNRMNDRIKAARIDGSVELDGQDIYQ 116
Query: 112 PQVSWI---------------FNATVRDNI-----------------LFGSAFEPAR--- 136
V+ + F ++R+NI L G + A
Sbjct: 117 DGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDEL 176
Query: 137 YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS 196
E+++ +L +++ + + + +SGGQ+QR+ +AR + + +V + D+P S
Sbjct: 177 VERSLRQAALWDEVN-------DRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPAS 229
Query: 197 ALDAHVGRQVFDRCIRGELSGK-TRVLVTNQLHFLSQVDRI 236
ALD ++ D + EL+ + T V+VT H + Q RI
Sbjct: 230 ALDPIATSKIED--LIEELAEEYTVVVVT---HNMQQAARI 265
|
Length = 305 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 65/243 (26%), Positives = 113/243 (46%), Gaps = 40/243 (16%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LER---GRILIDGFDIAKFGLM 737
V+ L+ TI V ++G +G GK+ T+ R+V LE+ G+I IDG D+ +
Sbjct: 21 VIDNLNLTIKQGTMVTLLGPSGCGKT----TVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ 76
Query: 738 DLRKILGIIPQSPVLF-----SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGL 792
R I ++ QS LF V + L + E +R +K+A+
Sbjct: 77 Q-RDIC-MVFQSYALFPHMSLGENVGYGLKMLGVPKE----ERKQR--VKEAL------- 121
Query: 793 DAQVSEAG------ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR 846
V AG + S GQ+Q ++L+RAL+ + K+L+ DE + +D +++ IR
Sbjct: 122 -ELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIR 180
Query: 847 EEFKS--CTMLIIAH-RLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTG 903
E + T L + H + D +++++ G++++ +P+EL S F M G
Sbjct: 181 ELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRF--MASFMG 238
Query: 904 AAN 906
AN
Sbjct: 239 DAN 241
|
Length = 351 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 2e-05
Identities = 41/162 (25%), Positives = 78/162 (48%), Gaps = 27/162 (16%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPVSDASA----------------- 102
++++D P S+ AI+G +G GK++++ ++ + +L P + +
Sbjct: 22 DVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81
Query: 103 VIRGTVAYVPQVSWIFNA-TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 161
IR V V Q F A ++ DN++ G R ++ ++ L + D E+
Sbjct: 82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN-GRVNRSEADEIVESSLKRVALWD--EV 138
Query: 162 GER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 199
+R + +SGGQ+QR+ +AR + +V + D+P SALD
Sbjct: 139 KDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALD 180
|
Length = 252 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 34/154 (22%), Positives = 66/154 (42%), Gaps = 10/154 (6%)
Query: 53 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIRGT 107
+ R ++ + G + + G G GKT+L+ + G PP++ + +
Sbjct: 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR 68
Query: 108 VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN 167
+ + ++ +A L S E R+ A + L + +R V
Sbjct: 69 DSIARGLLYLGHAPGIKTTL--SVLENLRFWHADHSDE--QVEEALARVGLNGFEDRPVA 124
Query: 168 -ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 200
+S GQ++RV++AR + S ++I D+P +ALD
Sbjct: 125 QLSAGQQRRVALARLLLSGRPLWILDEPTTALDK 158
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 49/227 (21%), Positives = 94/227 (41%), Gaps = 46/227 (20%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-------------- 107
+++L + G L I+G G GKT+++ + G+ P + S + GT
Sbjct: 20 DLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRP-DEGSVLFGGTDLTGLPEHQIARAG 78
Query: 108 VAYVPQVSWIF-NATVRDNI---------LFGSAF------EPARYEKAIDVTSLQHDLD 151
+ Q +F N TV +N+ +F S F E R E+ ++ L + D
Sbjct: 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEAD 138
Query: 152 LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 211
L G +S GQKQ + + + + + + D+P++ + + +
Sbjct: 139 RLAG-----------LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLK 187
Query: 212 RGELSGKTRVLVTNQ-LHFLSQVDRIILV-HEGMVKEEGTFEDLSNN 256
L+GK V+V + F+ + + V H+G V EG+ + + +
Sbjct: 188 S--LAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQAD 232
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 41/189 (21%)
Query: 40 PAISIRN-GYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSL---ISAM----- 90
A+ +RN F D +A L +I++ IP + A +G +G GK++L + M
Sbjct: 24 TALEVRNLNLFYGDKQA----LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVD 79
Query: 91 ----LGEL----PPVSDAS---AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEK 139
GE+ + D A +R V V Q F ++ +N+++G + +
Sbjct: 80 NCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRR 139
Query: 140 AIDVT--------SLQHDL-DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 190
+D +L ++ D L E +SGGQ+QR+ +ARA+ +V +
Sbjct: 140 VLDEAVERSLRGAALWDEVKDRL--------HENAFGLSGGQQQRLVIARAIAIEPEVLL 191
Query: 191 FDDPLSALD 199
D+P SALD
Sbjct: 192 LDEPTSALD 200
|
Length = 272 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 46/181 (25%), Positives = 82/181 (45%), Gaps = 38/181 (20%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF---GLMD 738
VLH +SF+I + + IVG +G+GKS++L+ L + G ++ +G ++K +
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 739 LR-KILGIIPQ---------------SPVLFSGTVRFNLDPFSEHSDADLWEALERAHLK 782
LR + LG I Q P+L E RA
Sbjct: 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPA--------------EINSRALEM 129
Query: 783 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-DALI 841
A ++GL+ + + S G+RQ ++++RAL+ ++++ DE T +D R D++
Sbjct: 130 LA----AVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIF 185
Query: 842 Q 842
Q
Sbjct: 186 Q 186
|
Length = 233 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 3e-05
Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 31/208 (14%)
Query: 56 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTV------A 109
E L I+ I G +V +G G GKT+ + + G L P S + G V
Sbjct: 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTS-GEVRVAGLVPWKRRKK 91
Query: 110 YVPQVSWIF--------NATVRDNILFGSA---FEPARYEKAIDVTSLQHDLDLLPGGDV 158
++ ++ +F + V D+ +A PAR++K +D S +LL ++
Sbjct: 92 FLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELS-----ELLDLEEL 146
Query: 159 TEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK 218
+ R +S GQ+ R +A A+ ++ D+P LD + +
Sbjct: 147 LDTPVR--QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERG 204
Query: 219 TRVLVTNQLHFLSQV----DRIILVHEG 242
T VL+T+ H++ + R++++ +G
Sbjct: 205 TTVLLTS--HYMKDIEALARRVLVIDKG 230
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 3e-05
Identities = 53/260 (20%), Positives = 101/260 (38%), Gaps = 48/260 (18%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT--------VAYV 111
L ++NL + G + A++G G GK++L+ + G P + I +A
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTK-GTITINNINYNKLDHKLAAQ 79
Query: 112 PQVSWIFNA-------TVRDNILFGS--------------AFEPARYEKAIDVTSLQHDL 150
+ I+ TV +N+ G R + L+ DL
Sbjct: 80 LGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDL 139
Query: 151 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD-- 208
D N+S KQ + +A+ + ++ V I D+P S+L +F
Sbjct: 140 DEKVA-----------NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIM 188
Query: 209 RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 267
+R E G V ++++L + ++ DR ++ +G G D+SN+ + +LM
Sbjct: 189 NQLRKE--GTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSNDDIV--RLMVGR 244
Query: 268 GKMEEYVEEKEDGETVDNKT 287
+ KE+ + ++T
Sbjct: 245 ELQNRFNAMKENVSNLAHET 264
|
Length = 510 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 53/236 (22%), Positives = 91/236 (38%), Gaps = 46/236 (19%)
Query: 57 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-PVSDASAVIRGTV------- 108
R L +++L I G + A++G G GK++L+ A+ G+L + A + G V
Sbjct: 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPL 73
Query: 109 ------------AYVPQVSW-IFNATVRDNILFG------SAFEPARYEKAIDVTSLQH- 148
A +PQ + F + R+ +L G A + I +L
Sbjct: 74 AAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALA 133
Query: 149 DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV---------YSNSDVFIFDDPLSALD 199
L G DVT +SGG+ RV AR + + D+P +ALD
Sbjct: 134 GATALVGRDVT-------TLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALD 186
Query: 200 AHVGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 253
++ D R + + + +V + DRI ++ +G + G D+
Sbjct: 187 LAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADV 242
|
Length = 272 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 3e-05
Identities = 54/223 (24%), Positives = 91/223 (40%), Gaps = 38/223 (17%)
Query: 680 PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA------- 732
P + +SF++ + VG+ G GAG+S ++ L+ G++ +DG I
Sbjct: 266 PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDA 325
Query: 733 -KFGLM----DLRKILGIIPQSPV----------LFSGTVRFNLDPFSEHSDADLWEALE 777
+ G+M D RK GIIP V ++ E +AD + +
Sbjct: 326 IRAGIMLCPED-RKAEGIIPVHSVADNINISARRHHL-RAGCLINNRWEAENADRF--IR 381
Query: 778 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 837
++K R + N S G +Q L R L K+++LDE T +DV
Sbjct: 382 SLNIKTPSREQLIM----------NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGA 431
Query: 838 DALIQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRV 878
I I E +L ++ L ++ DRI+++ GR+
Sbjct: 432 KHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRI 474
|
Length = 501 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 3e-05
Identities = 56/218 (25%), Positives = 99/218 (45%), Gaps = 30/218 (13%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK------- 733
P + +SF + + +GI G GA ++ ++ TLF I E G I + G I
Sbjct: 262 PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAI 321
Query: 734 ---FGLM-DLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLK------- 782
F L+ + R+ GI + F+ + N+ + L+ + +K
Sbjct: 322 NHGFALVTEERRSTGIYAYLDIGFNSLIS-NIRNYKNK-----VGLLDNSRMKSDTQWVI 375
Query: 783 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 842
D++R + G Q+ + S G +Q + + R LL + +IL+LDE T +DV I
Sbjct: 376 DSMRVKTPGHRTQIG----SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIY 431
Query: 843 KTIRE-EFKSCTMLIIAHRLNTIID-CDRILLLDSGRV 878
+ I E K ++II+ + ++ DRIL++ +G V
Sbjct: 432 QLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLV 469
|
Length = 491 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 3e-05
Identities = 53/203 (26%), Positives = 94/203 (46%), Gaps = 41/203 (20%)
Query: 698 IVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD--LRKILGIIPQSPV-LFS 754
++G +GAGK+++LN L E ++ G + +D ++ +G + Q + L +
Sbjct: 794 LMGASGAGKTTLLNVL---AERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPT 850
Query: 755 GTVRFNLD-----------PFSEHSD--ADLWEALERAHLKDAIRRNSLGLDAQVSEAGE 801
TVR +L SE + ++ + LE DA+ V GE
Sbjct: 851 STVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAV----------VGVPGE 900
Query: 802 NFSVGQRQLLSLSRALLRRSKILV-LDEATAAVDVRTDALIQKTIREEFKS-----CTML 855
+V QR+ L++ L+ + K+L+ LDE T+ +D +T I K +R+ CT+
Sbjct: 901 GLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTI- 959
Query: 856 IIAHRLNTII--DCDRILLLDSG 876
H+ + I+ + DR+LLL G
Sbjct: 960 ---HQPSAILFEEFDRLLLLQKG 979
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 54/223 (24%), Positives = 101/223 (45%), Gaps = 43/223 (19%)
Query: 686 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID----GFDIAKFGLMDL-- 739
+SF + P + +GIVG +G+GK+++L + GR+ D + + DL
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLKCI-------SGRLTPDAGTVTYRMRDGQPRDLYT 77
Query: 740 -----RKIL-----GIIPQSP-------VLFSGTVRFNLDPFSEHSDADLWEALERAHLK 782
R+ L G + Q+P V G + L ++ RA +
Sbjct: 78 MSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNI-----RAEAQ 132
Query: 783 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA--- 839
D + + LD ++ + FS G +Q L ++R L+ R +++ +DE T +DV A
Sbjct: 133 DWLEEVEIDLD-RIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLL 191
Query: 840 -LIQKTIREEFKSCTMLIIAHRLNTI-IDCDRILLLDSGRVLE 880
L++ +RE ++I+ H L + DR++++ G+V+E
Sbjct: 192 DLLRGLVRE--LGLAVVIVTHDLAVARLLADRLMVMKQGQVVE 232
|
Length = 258 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 4e-05
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 146 LQHD-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 199
L HD + LP T +G +SGGQKQR+S+ARA+ N + I D+ S+LD
Sbjct: 557 LIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLD 611
|
Length = 1466 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 4e-05
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 34/167 (20%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPVSDASAVI------------- 104
L I+++I S+VA +G +G GK++ + + +L P + I
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 105 ----RGTVAYVPQVSWIFNATVRDNILFG--------SAFEPARYEKAIDVTSLQHDLDL 152
R V V Q F ++ +N+ +G +AF R E+ + +L ++
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK- 137
Query: 153 LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 199
++ E +SGGQ+QR+ +ARA+ + V + D+P SALD
Sbjct: 138 ------DKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALD 178
|
Length = 250 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 4e-05
Identities = 43/176 (24%), Positives = 87/176 (49%), Gaps = 12/176 (6%)
Query: 697 GIVGRTGAGKSSMLNTLFRIVELE-----RGRILI--DGFDIAKFGL--MDLRKILGIIP 747
++G +G GKS+ L R+ +L G I++ D +I + +++R + ++
Sbjct: 46 ALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVF 105
Query: 748 QSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSL--GLDAQVSEAGENFSV 805
Q P F ++ N+ + ++ +++A+R +L + ++ + N S
Sbjct: 106 QKPNPFPKSIFENV-AYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSG 164
Query: 806 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRL 861
GQ+Q L ++RAL +IL+ DE T+A+D A I++ I + T+LI+ H +
Sbjct: 165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNM 220
|
Length = 265 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 5e-05
Identities = 56/239 (23%), Positives = 109/239 (45%), Gaps = 24/239 (10%)
Query: 665 SIKFEDVVLRYRPELP---PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 721
I ++V Y+ P L ++ TI +G TG+GKS+++ L + +
Sbjct: 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ 61
Query: 722 GRILIDGFDIAKFG----LMDLRKILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWEA 775
G + +D I + +RK +G++ Q P LF TV ++ ++ EA
Sbjct: 62 GSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEA 121
Query: 776 LERAHLKDAIRRNSLGLDAQVSEAGE-NFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 834
A K A+ +G+ + E S GQ + ++++ L KILVLDE TA +D
Sbjct: 122 EALAREKLAL----VGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLD 177
Query: 835 VRTDALIQKTIREEFKSC-----TMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 887
+ +K + FK T++++ H ++ + + D + +L+ G+++ P+++
Sbjct: 178 PKG----RKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232
|
Length = 280 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 5e-05
Identities = 30/201 (14%), Positives = 61/201 (30%), Gaps = 60/201 (29%)
Query: 692 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPV 751
P + + IVG G+GK+++ L R + G +
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGV--------------------------- 33
Query: 752 LFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 811
+ + + E L + V + S R L
Sbjct: 34 -----IYIDGEDILEEVLDQLLLII-------------------VGGKKASGSGELRLRL 69
Query: 812 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR-------EEFKSCTMLIIAHRLNTI 864
+L+ A + +L+LDE T+ +D +AL+ + K+ T+++ + +
Sbjct: 70 ALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDL 129
Query: 865 IDCDRILLLDSGRVLEYDTPE 885
+L R +
Sbjct: 130 G--PALLRRRFDRRIVLLLIL 148
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 6e-05
Identities = 52/203 (25%), Positives = 94/203 (46%), Gaps = 13/203 (6%)
Query: 686 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRKILG 744
+S + + +G+ G GAG++ + TL+ + GRI+++G +I L + L
Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLV 341
Query: 745 IIP---QSPVLF-SGTVRFNLDPFSEHSDADLW--EALERAHLKDAIRRNSLGLD-AQVS 797
+P QS L+ + +N+ + H+ W A E A L + RR +L +
Sbjct: 342 YLPEDRQSSGLYLDAPLAWNVCALT-HNRRGFWIKPARENAVL-ERYRR-ALNIKFNHAE 398
Query: 798 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCT-MLI 856
+A S G +Q + +++ L ++L++DE T VDV I + IR +L
Sbjct: 399 QAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLF 458
Query: 857 IAHRLNTIID-CDRILLLDSGRV 878
I+ L I DR+L++ G +
Sbjct: 459 ISSDLEEIEQMADRVLVMHQGEI 481
|
Length = 510 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 6e-05
Identities = 47/189 (24%), Positives = 76/189 (40%), Gaps = 46/189 (24%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG------------ 728
P+L I +++V +VGR GAGKS+++ L V L+ GRI+ +
Sbjct: 17 PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPP 76
Query: 729 -------FDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSD------ADLWEA 775
+D G+ + + L L ++ S+ A L E
Sbjct: 77 RNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVE----------TDPSEKNLNELAKLQEQ 126
Query: 776 LERA---HLKDAIRRN--SLGLDA--QVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 828
L+ L++ I LGLD +S S G + +L RAL+ +L+LDE
Sbjct: 127 LDHHNLWQLENRINEVLAQLGLDPDAALSS----LSGGWLRKAALGRALVSNPDVLLLDE 182
Query: 829 ATAAVDVRT 837
T +D+ T
Sbjct: 183 PTNHLDIET 191
|
Length = 635 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 7e-05
Identities = 57/222 (25%), Positives = 108/222 (48%), Gaps = 34/222 (15%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 740
V+ L TI + + ++G +G GK+++L + + GRI++DG DI +
Sbjct: 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDIT--HVPAEN 85
Query: 741 KILGIIPQSPVLFSG-TVRFNLD--------PFSEHSDADLWEALERAHLKDAIRRNSLG 791
+ + + QS LF TV N+ P +E + EAL L++ +R
Sbjct: 86 RHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAE-ITPRVMEALRMVQLEEFAQRKPHQ 144
Query: 792 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS 851
L S GQ+Q ++++RA++ + K+L+LDE+ +A+D + ++K ++ E K+
Sbjct: 145 L-----------SGGQQQRVAIARAVVNKPKVLLLDESLSALDYK----LRKQMQNELKA 189
Query: 852 ------CTMLIIAH-RLNTIIDCDRILLLDSGRVLEYDTPEE 886
T + + H + + DRI+++ GR+ + TP E
Sbjct: 190 LQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPRE 231
|
Length = 375 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 7e-05
Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 34/182 (18%)
Query: 70 GSLVAIVGGTGEGKTSLISAMLGE--------------LPPVSDASAVIRG----TVAYV 111
G L A++G +G GKT+L+ + G P + A I G +
Sbjct: 906 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHS 965
Query: 112 PQVSWIFNATVRDNILFGSAF-----EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV 166
PQV TVR+++++ SAF E ++ EK + V + ++L D +G GV
Sbjct: 966 PQV------TVRESLIY-SAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAI-VGLPGV 1017
Query: 167 N-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVT 224
+S Q++R+++A + +N + D+P S LDA V R +R + +G+T V
Sbjct: 1018 TGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM-RTVRNTVDTGRTVVCTI 1076
Query: 225 NQ 226
+Q
Sbjct: 1077 HQ 1078
|
Length = 1470 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 8e-05
Identities = 52/218 (23%), Positives = 94/218 (43%), Gaps = 28/218 (12%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLI---SAMLGELPPVSDASAV------------- 103
L I+LD L A++G +G GK++ + + M ++ + +
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 104 ---IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDV---TSLQHDLDLLPGGD 157
+R V V Q F +V DN+ +G + ++ ID SL+ D
Sbjct: 80 LVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKD 139
Query: 158 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 217
+ SGGQ+QR+ +ARA+ V + D+P SALD ++ + + EL
Sbjct: 140 --NLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLM--ELKH 195
Query: 218 K-TRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDL 253
+ T ++VT+ L ++ D+ + G + E G E++
Sbjct: 196 QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233
|
Length = 251 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 8e-05
Identities = 55/193 (28%), Positives = 83/193 (43%), Gaps = 51/193 (26%)
Query: 64 NLDIPV-GSLVAIVGGTGEGKTSLISAMLGELPP-------VSDASAVI---RGT----- 107
L IP G + I+G G GKT+ + + GEL P V+ RGT
Sbjct: 92 GLPIPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNY 151
Query: 108 ----------VA----YVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLL 153
V YV + +F VR+ L E + ++ ++ L++ LD
Sbjct: 152 FKKLYNGEIKVVHKPQYVDLIPKVFKGKVRE--LLKKVDERGKLDEVVERLGLENILD-- 207
Query: 154 PGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RC 210
R + +SGG+ QRV++A A+ ++D + FD+P S LD RQ + R
Sbjct: 208 ----------RDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDI---RQRLNVARL 254
Query: 211 IRGELSGKTRVLV 223
IR EL+ VLV
Sbjct: 255 IR-ELAEGKYVLV 266
|
Length = 590 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 9e-05
Identities = 58/237 (24%), Positives = 97/237 (40%), Gaps = 45/237 (18%)
Query: 669 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF-------------- 714
E+VV RY L+ L T P VGI+G G GKS+ L L
Sbjct: 78 EEVVHRYGVN-GFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPP 135
Query: 715 ---RIVELERGRILIDGFDIAKFGLMDLRKILGI--IPQSPVLFSGTVRFNLDPFSEHSD 769
+++ RG L + F G +LR + + P + G V
Sbjct: 136 SWDEVIKRFRGTELQNYFKKLYEG--ELRAVHKPQYVDLIPKVVKGKVG----------- 182
Query: 770 ADLWEAL-ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 828
+L + + ER + + R LGL+ + S G+ Q ++++ ALLR + + DE
Sbjct: 183 -ELLKKVDERGKFDEVVER--LGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDE 239
Query: 829 ATAAVDVRTDALIQKTIREEFKSC-TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTP 884
++ +D+R + IRE + ++++ H L ++D L D +L Y P
Sbjct: 240 PSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDL-AVLD----YLSDFVHIL-YGEP 290
|
Length = 591 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 51/206 (24%), Positives = 88/206 (42%), Gaps = 35/206 (16%)
Query: 55 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQV 114
+ L +NL I G + A++G G GK++L ++G P V G + + +
Sbjct: 11 GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG-HPKYE----VTEGEILFKGED 65
Query: 115 SWIFNATVRDNILFG--SAF-EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN--IS 169
I + + G AF P V + D L R VN S
Sbjct: 66 --ITDLPPEERARLGIFLAFQYPPEIP---GVKNA----DFL----------RYVNEGFS 106
Query: 170 GGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVTNQL 227
GG+K+R + + + D+ I D+P S LD R V + +R E GK+ +++T+
Sbjct: 107 GGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREE--GKSVLIITHYQ 164
Query: 228 HFLSQV--DRIILVHEGMVKEEGTFE 251
L + DR+ ++++G + + G E
Sbjct: 165 RLLDYIKPDRVHVLYDGRIVKSGDKE 190
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 1e-04
Identities = 55/219 (25%), Positives = 94/219 (42%), Gaps = 41/219 (18%)
Query: 669 EDVVLRYRPELPPVLHGLSFTIPPSDKV-GIVGRTGAGKSSMLNTLF------------- 714
E+ V RY L+GL IP KV GI+G G GK++ + L
Sbjct: 77 EEPVHRYGVN-GFKLYGLP--IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEE 133
Query: 715 ----RIVELERGRILIDGFDIAKFGLMDLRKILGI--IPQSPVLFSGTVRFNLDPFSEHS 768
+++ RG L + F G +++ + + P +F G VR
Sbjct: 134 PSWDEVLKRFRGTELQNYFKKLYNG--EIKVVHKPQYVDLIPKVFKGKVR---------- 181
Query: 769 DADLWE-ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLD 827
+L + ER L + + R LGL+ + S G+ Q ++++ ALLR + D
Sbjct: 182 --ELLKKVDERGKLDEVVER--LGLENILDRDISELSGGELQRVAIAAALLRDADFYFFD 237
Query: 828 EATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID 866
E T+ +D+R + + IRE + +L++ H L ++D
Sbjct: 238 EPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDL-AVLD 275
|
Length = 590 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 48/197 (24%), Positives = 80/197 (40%), Gaps = 51/197 (25%)
Query: 70 GSLVAIVGGTGEGKTSLISAMLGELPP-------VSDASAVI---RGT------------ 107
G ++ +VG G GK++ + + G+L P D ++ RG+
Sbjct: 26 GQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEG 85
Query: 108 -------VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 160
YV + V + L E + ++ +D L+H LD
Sbjct: 86 DVKVIVKPQYVDLIPKAVKGKVGE--LLKKKDERGKLDELVDQLELRHVLD--------- 134
Query: 161 IGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSG 217
R + +SGG+ QRV++A A+ ++D + FD+P S LD +Q + R IR
Sbjct: 135 ---RNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDI---KQRLNAARLIRELAED 188
Query: 218 KTRVLVTNQLHFLSQVD 234
VLV H L+ +D
Sbjct: 189 DNYVLVVE--HDLAVLD 203
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 57/229 (24%), Positives = 98/229 (42%), Gaps = 44/229 (19%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPVSDASA--------------- 102
L +NL+IP ++ A++G +G GK++L+ L EL P + S
Sbjct: 19 LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVI 78
Query: 103 VIRGTVAYVPQV-SWIFNATVRDNILFGSAFE---------PARYEKAIDVTSLQHDLDL 152
+R V V Q+ + I N ++ +N+ G R A++ L ++
Sbjct: 79 ELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK- 137
Query: 153 LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 212
+ +SGGQ+QR+ +ARA+ +V + D+P + LD ++ +
Sbjct: 138 ------DRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKI--ESLF 189
Query: 213 GELSGK-TRVLVTNQLHFLSQVDRI----ILVHEGMVKEEGTFEDLSNN 256
EL T VLVT HF Q RI +++G + E G ++ N
Sbjct: 190 LELKKDMTIVLVT---HFPQQAARISDYVAFLYKGQIVEWGPTREVFTN 235
|
Length = 250 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 53/226 (23%), Positives = 95/226 (42%), Gaps = 38/226 (16%)
Query: 63 INLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPVSDASAVIR--GTVAYVP------ 112
++L IP + A++G +G GK++L+ L EL + +R G Y P
Sbjct: 23 VDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82
Query: 113 ---QVSWIF-------NATVRDNILFGSAFE---------PARYEKAIDVTSLQHDLDLL 153
+V +F + T+ DN+ G R E A+ +L ++
Sbjct: 83 VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-- 140
Query: 154 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG 213
+ + N+SGGQ+QR+ +ARA+ + + D+P + +D VG + +
Sbjct: 141 -----DRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDP-VGTAKIEELLFE 194
Query: 214 ELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNNGE 258
T VLVT+ ++V D + ++ G + E G + N E
Sbjct: 195 LKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENPE 240
|
Length = 253 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 35/160 (21%), Positives = 63/160 (39%), Gaps = 42/160 (26%)
Query: 56 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP--------------PVSDAS 101
+ P L + + + G +V ++G G G ++L+ A+ P + +
Sbjct: 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA 78
Query: 102 AVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 160
G + YV + F TVR+ + F + G +
Sbjct: 79 EKYPGEIIYVSEEDVHFPTLTVRETLDF--------------ALRCK-------GNEFV- 116
Query: 161 IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 200
RG ISGG+++RVS+A A+ S + V +D+ LD+
Sbjct: 117 ---RG--ISGGERKRVSIAEALVSRASVLCWDNSTRGLDS 151
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 2e-04
Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 13/135 (9%)
Query: 67 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQ-VSWIFNATVRDN 125
I G ++ IVG G GKT+ + G L P ++Y PQ + ++ TV D
Sbjct: 362 IYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDE-GEVDPELKISYKPQYIKPDYDGTVED- 419
Query: 126 ILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYS 184
L S D+ S + +++ + + ++ V +SGG+ QRV++A +
Sbjct: 420 -LLRSI--------TDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSR 470
Query: 185 NSDVFIFDDPLSALD 199
++D+++ D+P + LD
Sbjct: 471 DADLYLLDEPSAHLD 485
|
Length = 590 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 168 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-GELSGKTRVLVTNQ 226
+SGG++QRV++ARA DV D+P LD G ++ D G T +LVT+
Sbjct: 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHD 206
Query: 227 LHFLSQVDRIILVHEGMVKEE 247
L ++ DR + + G ++EE
Sbjct: 207 LQLAARCDRRLRLVNGQLQEE 227
|
Length = 228 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-04
Identities = 30/94 (31%), Positives = 56/94 (59%), Gaps = 10/94 (10%)
Query: 169 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVTNQ 226
SGGQ QR+ +ARA+ + I D+P+SALD + QV + + ++ E+ G + + +
Sbjct: 163 SGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREM-GLSLIFIA-- 219
Query: 227 LHFLSQV----DRIILVHEGMVKEEGTFEDLSNN 256
H L+ V DR+++++ G E GT++++ +N
Sbjct: 220 -HDLAVVKHISDRVLVMYLGHAVELGTYDEVYHN 252
|
Length = 331 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 3e-04
Identities = 54/229 (23%), Positives = 93/229 (40%), Gaps = 78/229 (34%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG-TV--AYVPQVSWIF 118
+++ +P G +V ++G G GK++L + G+ P D+ + G TV AYV Q
Sbjct: 340 DLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP--DSGTIKIGETVKLAYVDQ----- 392
Query: 119 NATVRDNILFGSAFEPAR--YEKAIDVTSLQHDLDLLPGGDVTEIGERGVN--------- 167
RD + +P + +E+ G D+ ++G+R V
Sbjct: 393 ---SRDAL------DPNKTVWEEISG------------GLDIIQLGKREVPSRAYVGRFN 431
Query: 168 ------------ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR------QVFDR 209
+SGG++ RV +A+ + S +V + D+P + LD R F
Sbjct: 432 FKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAG 491
Query: 210 CIRGELSGKTRVLVTNQLHFLSQVDRI---ILVHEG---MVKEEGTFED 252
C V++++ FL DRI IL EG + EG + +
Sbjct: 492 CA---------VVISHDRWFL---DRIATHILAFEGDSHVEWFEGNYSE 528
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 54/220 (24%), Positives = 94/220 (42%), Gaps = 39/220 (17%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF---GLMD 738
+L G+ + + + ++G +G+GKS++L L + + G + + G + +
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84
Query: 739 LR-KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNS-------- 789
LR K +G + QS F L P ALE L +R S
Sbjct: 85 LRAKHVGFVFQS---------FMLIP--------TLNALENVELPALLRGESSRQSRNGA 127
Query: 790 ------LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 843
LGL ++ S G++Q ++L+RA R +L DE T +D +T I
Sbjct: 128 KALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIAD 187
Query: 844 ---TIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 880
++ E + T++++ H L CDR L L +G++ E
Sbjct: 188 LLFSLNREHGT-TLILVTHDLQLAARCDRRLRLVNGQLQE 226
|
Length = 228 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 4e-04
Identities = 23/81 (28%), Positives = 49/81 (60%), Gaps = 9/81 (11%)
Query: 801 ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-DALIQKTIREEFKSCTMLIIAH 859
E S G++ L+L++ LL +L+LDE T +D+ + +AL + ++ E+ T+++++H
Sbjct: 69 EQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEE-ALK-EYP-GTVILVSH 125
Query: 860 -R--LNTIIDCDRILLLDSGR 877
R L+ + +I+ L+ G+
Sbjct: 126 DRYFLDQV--ATKIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 4e-04
Identities = 48/209 (22%), Positives = 89/209 (42%), Gaps = 29/209 (13%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD------------ASAVIRGTVA 109
N+ ++IP G AI+G G GK++L+ + + P AS + +
Sbjct: 25 NLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIG 84
Query: 110 YVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSL-QHDLDLLPGG----DVTEIGER 164
+ Q NAT +I RY T + D + + +T + ++
Sbjct: 85 LLAQ-----NATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ 139
Query: 165 GVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLV 223
V+ +SGGQ+QR +A + + + + D+P + LD + Q+ + EL+ + +
Sbjct: 140 SVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD--ISHQIDLLELLSELNREKGYTL 197
Query: 224 TNQLHFLSQVDR----IILVHEGMVKEEG 248
LH L+Q R +I + EG + +G
Sbjct: 198 AAVLHDLNQACRYASHLIALREGKIVAQG 226
|
Length = 265 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 4e-04
Identities = 55/267 (20%), Positives = 108/267 (40%), Gaps = 40/267 (14%)
Query: 29 LLPNPPLTSGLPAISIRNGYFSWD-SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI 87
L P+ P G + RN WD R + +++ + G ++ + G G G+T L+
Sbjct: 245 LYPHEPHEIGDVILEARN-LTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELV 303
Query: 88 SAMLGELPPVSDASA--------------VIRGTVAYVPQ------------VSWIFNAT 121
A+ G P + + IR +A VP+ V +
Sbjct: 304 QALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLS 363
Query: 122 VRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 181
V + F + A + I +++Q L + IG +SGG +Q+ +A+
Sbjct: 364 VLKSFCFKMRIDAAAELQIIG-SAIQR-LKVKTASPFLPIG----RLSGGNQQKAVLAKM 417
Query: 182 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL-HFLSQVDRIILVH 240
+ +N V I D+P +D +++ + G ++V+++L L DR++++
Sbjct: 418 LLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIG 477
Query: 241 EGMVKEEGTFEDLSNNGELFQKLMENA 267
EG +K D N+ ++++ A
Sbjct: 478 EGKLK-----GDFVNHALTQEQVLAAA 499
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 4e-04
Identities = 45/210 (21%), Positives = 87/210 (41%), Gaps = 32/210 (15%)
Query: 698 IVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTV 757
+VG GAGKS++L + + G I G + + +L + + Q
Sbjct: 30 LVGPNGAGKSTLLARMAGMTSGS-GSIQFAGQPLEAWSATELARHRAYLSQQ-------- 80
Query: 758 RFNLDPFSEHSDADLWEAL-------ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 810
PF+ +W L R L + + +L LD ++ + S G+ Q
Sbjct: 81 --QTPPFAMP----VWHYLTLHQPDKTRTELLNDVA-GALALDDKLGRSTNQLSGGEWQR 133
Query: 811 LSLSRALLR-------RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIA-HRLN 862
+ L+ +L+ ++L+LDE ++DV + + + + + ++++ H LN
Sbjct: 134 VRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLN 193
Query: 863 -TIIDCDRILLLDSGRVLEYDTPEELLSNE 891
T+ R LL G++L EE+L+
Sbjct: 194 HTLRHAHRAWLLKRGKLLASGRREEVLTPP 223
|
Length = 248 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 5e-04
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 168 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK-TRVLVTNQ 226
+SGGQ+QR+ +ARA+ D+ + D+P SALD Q+ + EL T ++VT
Sbjct: 164 LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMF--ELKKNYTIIIVT-- 219
Query: 227 LHFLSQVDRI 236
H + Q R
Sbjct: 220 -HNMQQAARA 228
|
Length = 267 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 5e-04
Identities = 41/173 (23%), Positives = 76/173 (43%), Gaps = 21/173 (12%)
Query: 689 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQ 748
+I S+ +GI+G G GK++ + L +++ + G I I+ ++ K I
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVS-------YKPQYIKAD 73
Query: 749 SPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 808
+ GTVR D S + + + ++ + LD +V E S G+
Sbjct: 74 ----YEGTVR---DLLSSITKDFYTHPYFKTEIAKPLQIEQI-LDREVPE----LSGGEL 121
Query: 809 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAH 859
Q ++++ L + + I +LDE +A +DV + K IR E T ++ H
Sbjct: 122 QRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEH 174
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 5e-04
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 18/170 (10%)
Query: 55 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA--VIRGTVAYVP 112
A +P + ++L + G ++A+VGG+G GK+ +A LG LP +A V+ P
Sbjct: 14 AAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP 73
Query: 113 -QVSWIFNATVRDNILFGSAFEPAR------------YEKAIDVTSLQHDLDLLPGGDVT 159
+ AT+ N SAF P K D +L L+ + +
Sbjct: 74 CALRGRKIATIMQNPR--SAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAA 131
Query: 160 EIGER-GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 208
+ + +SGG QR+ +A A+ + I D+P + LD ++ D
Sbjct: 132 RVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILD 181
|
Length = 254 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 5e-04
Identities = 32/163 (19%), Positives = 49/163 (30%), Gaps = 44/163 (26%)
Query: 70 GSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFG 129
G ++ IVG G GKT+L A+ EL P I G + +
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLL---------- 51
Query: 130 SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 189
+G + + SG + R+++A A DV
Sbjct: 52 -----------------------------IIVGGKKASGSGELRLRLALALARKLKPDVL 82
Query: 190 IFDDPLSALDAHVGRQVFDRCIRGEL-----SGKTRVLVTNQL 227
I D+ S LDA + L V++T
Sbjct: 83 ILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 6e-04
Identities = 46/185 (24%), Positives = 76/185 (41%), Gaps = 49/185 (26%)
Query: 57 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELPPVSDASAVIRGTVAYVPQVS 115
+ L +I+L G+ + ++G G GK++L+ M G + +A V Y+PQ
Sbjct: 18 KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEP 77
Query: 116 WI-FNATVRDNILFG---------------SAF------------EPARYEKAIDVTSLQ 147
+ TVR+N+ G + F E A ++ ID
Sbjct: 78 QLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADA- 136
Query: 148 HDLDL----------LPGGD--VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL 195
DLD P D VT +SGG+++RV++ R + S D+ + D+P
Sbjct: 137 WDLDRKLEIAMDALRCPPWDADVT-------KLSGGERRRVALCRLLLSKPDMLLLDEPT 189
Query: 196 SALDA 200
+ LDA
Sbjct: 190 NHLDA 194
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 6e-04
Identities = 53/219 (24%), Positives = 97/219 (44%), Gaps = 29/219 (13%)
Query: 683 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG-----FDIAKFGLM 737
+SF + P + +GIVG +G+GK+++LN L + + G + D+
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81
Query: 738 DLRKIL----GIIPQSP-------VLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIR 786
+ R++L G + Q P V G + L D+ RA D +
Sbjct: 82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDI-----RATAGDWLE 136
Query: 787 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA----LIQ 842
R + ++ + FS G +Q L ++R L+ +++ +DE T +DV A L++
Sbjct: 137 RVEIDAA-RIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLR 195
Query: 843 KTIREEFKSCTMLIIAHRLNTI-IDCDRILLLDSGRVLE 880
+RE ++I+ H L + R+L++ GRV+E
Sbjct: 196 GLVRE--LGLAVVIVTHDLAVARLLAHRLLVMKQGRVVE 232
|
Length = 258 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 7e-04
Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 36/172 (20%)
Query: 56 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM---------------LGELPPVSDA 100
P L N++L + G VA+ G +G GK++L+ ++ G ++ A
Sbjct: 20 RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQA 79
Query: 101 S-----AVIRGTVAYV-------PQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 148
S V R T+ YV P+VS + + G E AR + L
Sbjct: 80 SPREVLEVRRKTIGYVSQFLRVIPRVSAL-EVVAEPLLERGVPREAARARARELLARLNI 138
Query: 149 DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 200
L T SGG++QRV++AR ++ + + D+P ++LDA
Sbjct: 139 PERLWHLPPAT--------FSGGEQQRVNIARGFIADYPILLLDEPTASLDA 182
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 7e-04
Identities = 43/182 (23%), Positives = 86/182 (47%), Gaps = 24/182 (13%)
Query: 56 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT---VAYVP 112
+R L +++L++ G ++ ++G G GK++L+ +LG + P D + R + YVP
Sbjct: 16 QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP--DEGVIKRNGKLRIGYVP 73
Query: 113 QVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE----IGERGVNI 168
Q ++ + T+ P + + + D+LP + I +
Sbjct: 74 QKLYL-DTTL-----------PLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKL 121
Query: 169 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC--IRGELSGKTRVLVTNQ 226
SGG+ QRV +ARA+ + + + D+P +D + ++D +R EL ++V++
Sbjct: 122 SGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRREL-DCAVLMVSHD 180
Query: 227 LH 228
LH
Sbjct: 181 LH 182
|
Length = 251 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 7e-04
Identities = 64/264 (24%), Positives = 105/264 (39%), Gaps = 69/264 (26%)
Query: 598 AFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELP-SEAPLVIESNRP 656
F G+L L T +L+ A +A+ L E++ ++LP + P
Sbjct: 200 DFVQFAGVLADCTLAETGEREEILQQALVAQ--LAHSEQLEG-VQLPEPDEPSARH--AL 254
Query: 657 PPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI 716
P P I + V+ Y P+LH LS+ + P + IVG GAGKS++L+
Sbjct: 255 PANEPR---IVLNNGVVSYNDR--PILHNLSWQVNPGEHWQIVGPNGAGKSTLLS----- 304
Query: 717 VELERGRILIDG-------FDIAKFG--------LMDLRKILGIIPQSPVL---FSGTVR 758
LI G D+ FG + D++K +G + S L S +VR
Sbjct: 305 --------LITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVR 356
Query: 759 -------------FNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG-ENFS 804
+ + A W + LG+D + ++A + S
Sbjct: 357 NVILSGFFDSIGIYQAVSDRQQKLAQQWLDI-------------LGIDKRTADAPFHSLS 403
Query: 805 VGQRQLLSLSRALLRRSKILVLDE 828
GQ++L + RAL++ +L+LDE
Sbjct: 404 WGQQRLALIVRALVKHPTLLILDE 427
|
Length = 490 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 8e-04
Identities = 48/219 (21%), Positives = 101/219 (46%), Gaps = 12/219 (5%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI---AKFGLM 737
+ +S T+P I+G +G GK+++L + + + G IL DG +I ++ L
Sbjct: 21 CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLY 80
Query: 738 DLRKILGIIPQSPVLFSG-TVRFNLD-PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQ 795
+RK + ++ QS LF+ V N+ P EH+ L L + + ++ ++GL
Sbjct: 81 TVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTV--MMKLEAVGLRGA 136
Query: 796 VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS--CT 853
S G + +L+RA+ +++ DE D T ++ K I E + T
Sbjct: 137 AKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVT 196
Query: 854 MLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 891
++++H + ++ D ++ +++ + + + L +N
Sbjct: 197 CVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANP 235
|
Length = 269 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 8e-04
Identities = 25/89 (28%), Positives = 53/89 (59%), Gaps = 4/89 (4%)
Query: 168 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVTN 225
+SGG +QRV +A A+ V I D+P +ALD + Q+ + ++ E+S + +T+
Sbjct: 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGV-IFITH 227
Query: 226 QLHFLSQV-DRIILVHEGMVKEEGTFEDL 253
+ ++++ DR++++++G E G+ E +
Sbjct: 228 DMGVVAEIADRVLVMYQGEAVETGSVEQI 256
|
Length = 623 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 8e-04
Identities = 57/224 (25%), Positives = 107/224 (47%), Gaps = 42/224 (18%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI----AKFGL 736
P ++ +SFT+ + +G+ G GAG++ ++ L+ + G + +DG ++ + GL
Sbjct: 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGL 325
Query: 737 M-------DLRK----ILGIIPQSPVLFSGTVRFN-----LDPFSEHSDADLWEALERAH 780
+ RK +LG+ +V+ N L FS + L A E+
Sbjct: 326 ANGIVYISEDRKRDGLVLGM----------SVKENMSLTALRYFS-RAGGSLKHADEQQA 374
Query: 781 LKDAIRRNSL---GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 837
+ D IR ++ ++ + S G +Q ++++R L+ R K+L+LDE T VDV
Sbjct: 375 VSDFIRLFNIKTPSMEQAIG----LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGA 430
Query: 838 DALIQKTIREEFKSCTMLII--AHRLNTIID-CDRILLLDSGRV 878
I + I +FK+ + II + + ++ DRIL++ GR+
Sbjct: 431 KKEIYQLI-NQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRI 473
|
Length = 501 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 0.001
Identities = 69/237 (29%), Positives = 103/237 (43%), Gaps = 72/237 (30%)
Query: 686 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LMDLRKI 742
LSF P K+G++G GAGKS TL RI + G D G K+
Sbjct: 28 LSFF--PGAKIGVLGLNGAGKS----TLLRI---------MAGVDKEFEGEARPAPGIKV 72
Query: 743 LGIIPQSPVL-FSGTVRFN-----------LDPFSEHS------DADLWEAL--ERAHLK 782
G +PQ P L TVR N LD F+E DAD +AL E+ L+
Sbjct: 73 -GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADF-DALAAEQGELQ 130
Query: 783 DAI-RRNSLGLDAQVSEAGE------------NFSVGQRQLLSLSRALLRRSKILVLDEA 829
+ I ++ LD+Q+ A + S G+R+ ++L R LL + +L+LDE
Sbjct: 131 EIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEP 190
Query: 830 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDR---------ILLLDSGR 877
T +D + A +++ + ++ T++ + H DR IL LD GR
Sbjct: 191 TNHLDAESVAWLEQFLH-DYPG-TVVAVTH--------DRYFLDNVAGWILELDRGR 237
|
Length = 556 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.002
Identities = 43/201 (21%), Positives = 90/201 (44%), Gaps = 31/201 (15%)
Query: 22 LLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGE 81
++ E+ + P P + + + Y+ E+ + +I++DI ++ A++G +G
Sbjct: 4 MVREKIEIAPFPEAKEHILEVKDLSIYY-----GEKRAVNDISMDIEKHAVTALIGPSGC 58
Query: 82 GKTSLISAM--LGELPPVSDASAVI-----------------RGTVAYVPQVSWIFNATV 122
GK++ + ++ + +L P + + I R + V Q F ++
Sbjct: 59 GKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSI 118
Query: 123 RDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGER----GVNISGGQKQRVSM 178
+NI + R + +D ++ L D E+ +R +++SGGQ+QR+ +
Sbjct: 119 YNNITHALKYAGERRKSVLD-EIVEESLTKAALWD--EVKDRLHSSALSLSGGQQQRLCI 175
Query: 179 ARAVYSNSDVFIFDDPLSALD 199
AR + V + D+P SALD
Sbjct: 176 ARTLAMKPAVLLLDEPASALD 196
|
Length = 268 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 54/227 (23%), Positives = 94/227 (41%), Gaps = 37/227 (16%)
Query: 55 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-------------------ELP 95
++ L +NL + G + AI+G G GK++L + G EL
Sbjct: 11 EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELE 70
Query: 96 PVSDASAVIRGTVAYVPQVSWIFNAT-VRDNILFGSAFEPARYEKAIDV----TSLQHDL 150
P A A + Y ++ + N +R + +A AR E+ +D+ L+ L
Sbjct: 71 PDERARAGLFLAFQYPEEIPGVSNLEFLRSAL---NARRSARGEEPLDLLDFLKLLKAKL 127
Query: 151 DLLPGGDVTEIGERGVNI--SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 208
LL G E R VN SGG+K+R + + + I D+ S LD + V +
Sbjct: 128 ALL--GMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAE 185
Query: 209 RCIRGELSGKTR--VLVTNQLHFLSQV--DRIILVHEGMVKEEGTFE 251
I L R +++T+ L+ + D + ++ +G + + G E
Sbjct: 186 -GI-NRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE 230
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.002
Identities = 31/105 (29%), Positives = 58/105 (55%), Gaps = 7/105 (6%)
Query: 167 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQ 226
+SGG +Q+V++AR + + V I D+P +D ++++ + + G + +LV+++
Sbjct: 395 LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSE 454
Query: 227 L-HFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA-GK 269
+ L DRI+++HEG + E T E + +KLM A GK
Sbjct: 455 MPEVLGMSDRILVMHEGRISGEFTREQATQ-----EKLMAAAVGK 494
|
Length = 501 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 31/176 (17%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 740
PV L F + + + + G GAGK+++L L ++ +E G+I IDG + D
Sbjct: 25 PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATR---GDRS 81
Query: 741 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI--RR------NSL-- 790
+ + + P L ADL LE H + RR ++L
Sbjct: 82 RFMAYLGHLPGL----------------KADL-STLENLHFLCGLHGRRAKQMPGSALAI 124
Query: 791 -GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 845
GL S GQ++ L+L+R L + + +LDE A +D+ L+ + I
Sbjct: 125 VGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMI 180
|
Length = 214 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 51/239 (21%), Positives = 87/239 (36%), Gaps = 39/239 (16%)
Query: 58 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS------------DASAVIR 105
+ +I+ +IP G +V +G G GK++ + + G L P S +R
Sbjct: 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLR 97
Query: 106 --GTVAYVPQVSWIFNATVRDNILFGSAFE--PARYEKAIDVTSLQHDLDLLPGGDVTEI 161
G V W + + +E + + +D L LDL +
Sbjct: 98 SIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLD--FLTEILDLEG-----FL 150
Query: 162 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRV 221
+S GQ+ R +A A+ V D+P LD V Q R E + + +
Sbjct: 151 KWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLD--VNAQANIREFLKEYNEERQA 208
Query: 222 LVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEE 276
V H + DR++L+ +G + +GT +L E G +E+ E
Sbjct: 209 TVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLA----------QLQEQFGPYKEFSVE 257
|
Length = 325 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.003
Identities = 60/239 (25%), Positives = 100/239 (41%), Gaps = 58/239 (24%)
Query: 624 ASLAENSLNAVERVGNYIELPSEAPLVIESNRPP--PGWPSSGSIKFEDVVLRYRPELPP 681
ASL ++ + A++R+G+ + ++ E P PG P I F D Y P P
Sbjct: 468 ASLVQSRIKALDRLGHVDAVVNDPDYKFEFPTPDDRPGPPI---ISFSDASFGY-PGGPL 523
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 741
+ L+F I ++ +VG G GKS++L LI G +L+
Sbjct: 524 LFKNLNFGIDLDSRIAMVGPNGIGKSTILK-------------LISG---------ELQP 561
Query: 742 ILGIIPQSPVLFSGTVRFNLDPFSEH--------SDADLW---------EALERAHLKDA 784
G + +S VR + FS+H S+ L+ E RAHL
Sbjct: 562 SSGTVFRSA-----KVRMAV--FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSF 614
Query: 785 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV-RTDALIQ 842
+L L + +G GQ+ ++ ++ ++ IL+LDE + +D+ +ALIQ
Sbjct: 615 GVTGNLALQPMYTLSG-----GQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQ 668
|
Length = 718 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.003
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 169 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 208
SGGQ+QR+ +ARA+ N V I D+ +SALD + Q+ +
Sbjct: 465 SGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIIN 504
|
Length = 623 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.003
Identities = 55/229 (24%), Positives = 98/229 (42%), Gaps = 56/229 (24%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE--RGRILIDGFDIAKFGLMDL 739
+L+G++ P + + ++G +G+GKS++LN L ++ G IL + K +
Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----QI 138
Query: 740 RKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSE 798
K G + Q +L+ TVR L ++ +L R + L ++ +SE
Sbjct: 139 LKRTGFVTQDDILYPHLTVRETL----------VFCSLLRLPKSLTKQEKILVAESVISE 188
Query: 799 AG----EN----------FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA--LIQ 842
G EN S G+R+ +S++ +L +L+LDE T+ +D T A L+
Sbjct: 189 LGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDA-TAAYRLVL 247
Query: 843 KTIREEFKSCTMLIIAHRLNTIIDC------------DRILLLDSGRVL 879
T+ +A + TI+ D +L+L GR L
Sbjct: 248 ----------TLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCL 286
|
Length = 659 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 53/217 (24%), Positives = 91/217 (41%), Gaps = 43/217 (19%)
Query: 55 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP----------PVSDAS--- 101
A L ++ ++ G ++ +VG G GK++L++ M G LP P+ S
Sbjct: 7 AVSTRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAE 66
Query: 102 -AVIRGTVAYVPQVSWIFNATVRDNI-LFGSA-FEPARYEKAI-DVTSLQHDLDLLPGGD 157
A R ++ Q + F V + L A+ +V D L
Sbjct: 67 LARHRAYLS--QQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLG--- 121
Query: 158 VTEIGERGVN-ISGGQKQRVSMA-------RAVYSNSDVFIFDDPLSALDAHVGRQV-FD 208
R VN +SGG+ QRV +A + + + D+P+++LD V +Q D
Sbjct: 122 ------RSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLD--VAQQAALD 173
Query: 209 RCIRGELSGKTR-VLVTNQ-L-HFLSQVDRIILVHEG 242
R + EL + V++++ L H L DR+ L+ +G
Sbjct: 174 RLLS-ELCQQGIAVVMSSHDLNHTLRHADRVWLLKQG 209
|
Length = 248 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.004
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 169 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 206
SGGQ+QR+++ARA+ + I D+P S+LD V Q+
Sbjct: 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQI 464
|
Length = 529 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 54/239 (22%), Positives = 104/239 (43%), Gaps = 43/239 (17%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-- 739
+ +S T+ + G+VG +G+GKS + + + + + R+ D L+ L
Sbjct: 22 AVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNK-DNWRVTADRMRFDDIDLLRLSP 80
Query: 740 ---RKILG----IIPQSPVLFSGTVRFNLDPFSEHSDADLWEAL----------ERAHLK 782
RK++G +I Q P LDP SE L + + +R +
Sbjct: 81 RERRKLVGHNVSMIFQEPQSC-------LDP-SERVGRQLIQNIPAWTYKGRWWQRFGWR 132
Query: 783 DAIRRNSLGLDAQV---------SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAV 833
+R ++ L +V + G+ Q + ++ AL + ++L+ DE T ++
Sbjct: 133 ---KRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSM 189
Query: 834 DVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889
+ T A I + + + + T+L+I+H L I D+I +L G+ +E EEL++
Sbjct: 190 EPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVT 248
|
Length = 330 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1050 | |||
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-156 Score=1536.80 Aligned_cols=1048 Identities=86% Similarity=1.292 Sum_probs=901.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCC
Q 001580 2 FVVAWQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGE 81 (1050)
Q Consensus 2 ~~~i~~~~~a~~s~~Ri~~fl~~~e~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGs 81 (1050)
|..++++.++++|++||++||+.+|....++++..++...|+++|++|+|+.++++++|+|+||++++|++++|+|++||
T Consensus 575 ~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGS 654 (1622)
T PLN03130 575 PNLITQAVNANVSLKRLEELLLAEERVLLPNPPLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGE 654 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcccccccCCcccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCC
Confidence 56788999999999999999998765332232222233469999999999855457899999999999999999999999
Q ss_pred cHHHHHHHHHcCCCCCCCCeeEEeCcEEEEecCCCCCcccHHHHhccCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccc
Q 001580 82 GKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 161 (1050)
Q Consensus 82 GKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~TV~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v 161 (1050)
|||||+++|+|+++|++|+...+++.|+||+|+||+|++||+|||+||.++++++|.++++.|++.++++.+|+||+|.+
T Consensus 655 GKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~I 734 (1622)
T PLN03130 655 GKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEI 734 (1622)
T ss_pred CHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccc
Confidence 99999999999999998445557889999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhhcCEEEEEcC
Q 001580 162 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHE 241 (1050)
Q Consensus 162 g~~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~~d~i~~l~~ 241 (1050)
|++|.+|||||||||+||||||++|+|||||||||+||+++.+.+++.+++...+|+|+|+|||+++++..+|+|++|++
T Consensus 735 Ge~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~ 814 (1622)
T PLN03130 735 GERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHE 814 (1622)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeC
Confidence 99999999999999999999999999999999999999999999998887655578999999999999999999999999
Q ss_pred CeEeeccChhhhhcChHHHHHHHHHhhhhhhhhhhcccCcccccCCCCCCCCCCCCCCCCccccccccccccchhhhhhh
Q 001580 242 GMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEE 321 (1050)
Q Consensus 242 G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (1050)
|++++.|+++++.+..+.|..+....+..++..++.... ........+.........+............+..+..++.
T Consensus 815 G~i~e~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 893 (1622)
T PLN03130 815 GMIKEEGTYEELSNNGPLFQKLMENAGKMEEYVEENGEE-EDDQTSSKPVANGNANNLKKDSSSKKKSKEGKSVLIKQEE 893 (1622)
T ss_pred CEEEEeCCHHHHHhcchhHHHHHHhcccccccccccccc-cccccccccccccccccccccccccccccccchhhhhHHH
Confidence 999999999999988888888776543221111100000 0000000000000000000000000001111122344566
Q ss_pred hhcccccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHH
Q 001580 322 RETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLAN 401 (1050)
Q Consensus 322 ~~~~~~~~~~~~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 401 (1050)
++.|.+++.++++|+++.|+.+.++++++++++.+.+....+.|+++|.+..........++..+|++++++..++.+++
T Consensus 894 ~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~i~~~l~~~~~i~~~~~ 973 (1622)
T PLN03130 894 RETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGPLFYNLIYALLSFGQVLVTLLN 973 (1622)
T ss_pred HhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 77888999999999998887777777777777888888889999999988654333445667778888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 402 SYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVST 481 (1050)
Q Consensus 402 ~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (1050)
.++....+.+++.++|.+++++++++|+.||+++++|+++||+++|+..++..++..+..++..++.++.+++++.++.+
T Consensus 974 ~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~ 1053 (1622)
T PLN03130 974 SYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVST 1053 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888888888888888888888778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 482 MSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNM 561 (1050)
Q Consensus 482 ~~~~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (1050)
+.++.++|++++++..+.++.+..++.++....+++++++++.|+++|+++||+|+.++++.+.+.+..+...+..+...
T Consensus 1054 ~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~ 1133 (1622)
T PLN03130 1054 ISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNM 1133 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888877777777788888899999999999999999999999999999999999999999999999988888888
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001580 562 GANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYI 641 (1050)
Q Consensus 562 ~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~ 641 (1050)
..++|+.+++.+++.+++++++.+.+..++.......+...+|.+++++..+..++.++.+.....++.+.+++|+.+++
T Consensus 1134 ~~~~wl~~~l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~ 1213 (1622)
T PLN03130 1134 SSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYI 1213 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999988888887777776666554433334455678899999999999999999999999999999999999999
Q ss_pred cCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCc
Q 001580 642 ELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 721 (1050)
Q Consensus 642 ~~~~e~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~ 721 (1050)
+.|+|.+...+...+++.||..|.|+|+||+|+|+++.+++|+|+||+|+|||++|||||||||||||+++|+|+|+|++
T Consensus 1214 ~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~ 1293 (1622)
T PLN03130 1214 DLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER 1293 (1622)
T ss_pred CCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCC
Confidence 98877653333333455688888999999999997655579999999999999999999999999999999999999999
Q ss_pred cEEEECCeecCCCChHHHhhheEEEcCCcccccccHHHhcccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCC
Q 001580 722 GRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGE 801 (1050)
Q Consensus 722 G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~ 801 (1050)
|+|.+||+|+++++++++|++|+||||+|.+|++|||+||+++.+++|++++++++.++++++++.+|.||||.+|++|.
T Consensus 1294 G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~ 1373 (1622)
T PLN03130 1294 GRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGE 1373 (1622)
T ss_pred ceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCC
Confidence 99999999999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEe
Q 001580 802 NFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEY 881 (1050)
Q Consensus 802 ~LSgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~ 881 (1050)
+|||||||||||||||+++|+|||||||||+||++|++.|++.|++.++++|+|+||||++++.+||||+||++|+|+|.
T Consensus 1374 nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~ 1453 (1622)
T PLN03130 1374 NFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEF 1453 (1622)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred cChhHHhhcCCChHHHHHHhhccchHHHHHHHhhcccchhhhhhhhhccchhhhHHHhhHHHHHhccchhhcccccCccc
Q 001580 882 DTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDL 961 (1050)
Q Consensus 882 g~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 961 (1050)
|+|+||++++++.|+++++.++....+.+.........+.....+....+.+.++.+..+|+.+++.+.+.++.+++.++
T Consensus 1454 Gt~~eLl~~~~g~f~~L~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1533 (1622)
T PLN03130 1454 DTPENLLSNEGSAFSKMVQSTGAANAQYLRSLVFGGDEDRLAREESKALDGQRKWLASSRWAAAAQFALAVSLTSSQNDL 1533 (1622)
T ss_pred CCHHHHHhCCCCHHHHHHHHcChhhhHHHHHHHhccccccccccchhcccchhhHHHhhhcccchhhhhhhhccccccch
Confidence 99999998877899999988777665555544322111112223344567778888888888888888999999999999
Q ss_pred hhchhhhhhhHHhhcchhhhhHHHhhcCCCchhhhhhhcccccchhhHHHHHHHHHhhhhhhhHhhhhccccCCCCCCCc
Q 001580 962 QRLEVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLSVMSRLARNRLHQSDYDLEER 1041 (1050)
Q Consensus 962 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1041 (1050)
+.+++++..++++++|+++.++++|.+|+||+.+.+.+.++++++|+||+++|+|+||+++|+|+++||.||++|+|++.
T Consensus 1534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1613 (1622)
T PLN03130 1534 QSLEIEDENSILEKTKDAVITLQSVLEGKHDKEIDESLNQRQVPRDGWWSSLYRMVEGLAVMSRLARNRMQQSDHNFEGK 1613 (1622)
T ss_pred hccccCCchhhhhhhhhhHhHHHHhhccccccccchhhhhccCCcccchHHHHHHHhccccchhHHHHhhccCcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccCCC
Q 001580 1042 SIDWDHVEM 1050 (1050)
Q Consensus 1042 ~~~~~~~~~ 1050 (1050)
++|||++||
T Consensus 1614 ~~~~~~~~~ 1622 (1622)
T PLN03130 1614 SIDWDNVEM 1622 (1622)
T ss_pred cCChhhhcC
Confidence 999999997
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-152 Score=1419.34 Aligned_cols=891 Identities=52% Similarity=0.867 Sum_probs=802.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhcccCCCC--CCCCCCCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCC
Q 001580 2 FVVAWQVVNANVSLKRMEEFLLAEEKILLPNP--PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGT 79 (1050)
Q Consensus 2 ~~~i~~~~~a~~s~~Ri~~fl~~~e~~~~~~~--~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~n 79 (1050)
|.+|.++++|+||++|+++||..||......+ +..++...|+++|++|+|++....+.|+||||+|++|+.+||||+.
T Consensus 477 P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~v 556 (1381)
T KOG0054|consen 477 PSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPV 556 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCC
Confidence 78999999999999999999999997655443 4455566799999999999755567999999999999999999999
Q ss_pred CCcHHHHHHHHHcCCCCCCCCeeEEeCcEEEEecCCCCCcccHHHHhccCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcc
Q 001580 80 GEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVT 159 (1050)
Q Consensus 80 GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~TV~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t 159 (1050)
|||||+||.+|+|+++..+|. ..++|.++||||.||++++||+|||+||.++++++|++++++|+|.+|++.+|.||.|
T Consensus 557 GsGKSSLL~AiLGEm~~~sG~-v~v~gsiaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~T 635 (1381)
T KOG0054|consen 557 GSGKSSLLSAILGEMPKLSGS-VAVNGSVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLT 635 (1381)
T ss_pred CCCHHHHHHHHhcCcccccce-EEEcCeEEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcc
Confidence 999999999999999999875 4577789999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhhcCEEEEE
Q 001580 160 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV 239 (1050)
Q Consensus 160 ~vg~~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~~d~i~~l 239 (1050)
+|||+|.+|||||||||+||||+|+++||||||+|+|++|+++.++||+.|++...++||+|+|||.++++++||+|++|
T Consensus 636 eIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl 715 (1381)
T KOG0054|consen 636 EIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVL 715 (1381)
T ss_pred eecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEe
Confidence 99999999999999999999999999999999999999999999999999998778899999999999999999999999
Q ss_pred cCCeEeeccChhhhhcChHHHHHHHHHhhhhhhhhhhcccCcccccCCCCCCCC-CCCCCCCCccccccccccccchhhh
Q 001580 240 HEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAAN-GVDNDLPKEASDTRKTKEGKSVLIK 318 (1050)
Q Consensus 240 ~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (1050)
++|+|.+.|+++|+++.+..|..+..+........ .... ............ ........................+
T Consensus 716 ~~G~I~~~Gty~el~~~~~~~~~l~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1381)
T KOG0054|consen 716 KDGKIVESGTYEELLKSGGDFAELAHEEESEQEEE--ASEK-DLESGESSRESESRSLESLSSEEEKSKDEKEEEDKLVQ 792 (1381)
T ss_pred cCCeEecccCHHHHHhcchhHHHHhhccchhhccc--cccc-cccccccccchhhhhhhhhcccccccccccchhhHHHH
Confidence 99999999999999988888887733221111100 0000 000000000000 0000000000001111111234456
Q ss_pred hhhhhcccccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCC---CChhHHHHHHHHHHHHHH
Q 001580 319 QEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKT---HGPLFYNTIYSLLSFGQV 395 (1050)
Q Consensus 319 ~~~~~~~~~~~~~~~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~ll~~~~~ 395 (1050)
+++++.|.++|++|+.|+++.++++.+++++++.+..+.+.....+|+++|.+...... ....+|..+|.++++++.
T Consensus 793 ~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~ 872 (1381)
T KOG0054|consen 793 EEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASS 872 (1381)
T ss_pred HHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHH
Confidence 67789999999999999999777777777788888899999999999999998865443 467889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 396 LVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVL 475 (1050)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 475 (1050)
++.+++++++...+.++++.+|+.++++++|.||.||+++|+|+|+|||++|++.+|..++..+..++..++.+++++++
T Consensus 873 ~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~v 952 (1381)
T KOG0054|consen 873 LLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVV 952 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHH
Q 001580 476 IGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIR 555 (1050)
Q Consensus 476 ~~~~~~~~~~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~ 555 (1050)
+.++.|+.+++++|+.++++....+|.+++|+++|+++.+++|+++|++|++.|+.|||||+.+++|.+.+....+.+.+
T Consensus 953 i~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~ 1032 (1381)
T KOG0054|consen 953 ISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSR 1032 (1381)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 556 YTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVE 635 (1050)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 635 (1050)
..+.....++|++++++.+++++++.++.++++..... ...+.+|+.++|+++++..++++.+.....|+.+.++|
T Consensus 1033 ~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~----~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVE 1108 (1381)
T KOG0054|consen 1033 AFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGL----ISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVE 1108 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC----CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 99999999999999999999999999999888765542 11567999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhc
Q 001580 636 RVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 715 (1050)
Q Consensus 636 R~~~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g 715 (1050)
|+.+|.+.|+|.|...+...+++.||..|.|+|+|++.+|+++.++||+||||+|+|||+|||||++|||||||+++|.|
T Consensus 1109 Rv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFR 1188 (1381)
T KOG0054|consen 1109 RVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFR 1188 (1381)
T ss_pred HHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHH
Confidence 99999999988555555555889999999999999999999888899999999999999999999999999999999999
Q ss_pred cccCCccEEEECCeecCCCChHHHhhheEEEcCCcccccccHHHhcccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchh
Q 001580 716 IVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQ 795 (1050)
Q Consensus 716 ~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~ 795 (1050)
+.+|.+|+|.|||+||.+++.+++|++++++||||.||+||+|.||||+.+++|+++|+||+.|++.+++.++|.|||+.
T Consensus 1189 l~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~ 1268 (1381)
T KOG0054|consen 1189 LVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSE 1268 (1381)
T ss_pred hcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeC
Q 001580 796 VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDS 875 (1050)
Q Consensus 796 v~~~~~~LSgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~ 875 (1050)
+.|+|.|+|-||||.+||||||+++++||+|||+|+++|++|...|++.|++.+++||||.|+||++++.+||||+|||+
T Consensus 1269 v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~ 1348 (1381)
T KOG0054|consen 1269 VSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDA 1348 (1381)
T ss_pred ecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecChhHHhhcCCChHHHHHH
Q 001580 876 GRVLEYDTPEELLSNEGSSFSKMVQ 900 (1050)
Q Consensus 876 G~i~~~g~~~el~~~~~~~~~~~~~ 900 (1050)
|+|+|+|+|.+|++++++.|..++.
T Consensus 1349 G~v~EfdsP~~Ll~~~~S~f~~~l~ 1373 (1381)
T KOG0054|consen 1349 GRVVEFDSPAELLSDKDSLFSSLLK 1373 (1381)
T ss_pred CeEeecCChHHHHhCCcchHHHHHH
Confidence 9999999999999998888874443
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-136 Score=1345.31 Aligned_cols=905 Identities=76% Similarity=1.172 Sum_probs=766.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCC
Q 001580 2 FVVAWQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGE 81 (1050)
Q Consensus 2 ~~~i~~~~~a~~s~~Ri~~fl~~~e~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGs 81 (1050)
+..++++.+|++|++||++||+.++....+.++..++...|+++|++|+|+.+.++++|+|+||++++|++++|+|++||
T Consensus 575 ~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~~~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGS 654 (1495)
T PLN03232 575 PNLLSQVVNANVSLQRIEELLLSEERILAQNPPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGE 654 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCccccccccCCcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCC
Confidence 56788999999999999999998764322222222233469999999999854457899999999999999999999999
Q ss_pred cHHHHHHHHHcCCCCCCCCeeEEeCcEEEEecCCCCCcccHHHHhccCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccc
Q 001580 82 GKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 161 (1050)
Q Consensus 82 GKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~TV~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v 161 (1050)
|||||+++|+|+++|++|+...+++.|+||+|+||+|++||+|||+||.+++++++.++++.|++.++++.+|+||+|.+
T Consensus 655 GKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~I 734 (1495)
T PLN03232 655 GKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEI 734 (1495)
T ss_pred cHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCcee
Confidence 99999999999999999988888999999999999999999999999998999999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhhcCEEEEEcC
Q 001580 162 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHE 241 (1050)
Q Consensus 162 g~~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~~d~i~~l~~ 241 (1050)
|++|.+|||||||||+||||||++|+|||||||||+||+++++++++.+++...+++|+|+|||+++.+..||+|++|++
T Consensus 735 Ge~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~ 814 (1495)
T PLN03232 735 GERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSE 814 (1495)
T ss_pred cCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeC
Confidence 99999999999999999999999999999999999999999999999887655678999999999999999999999999
Q ss_pred CeEeeccChhhhhcChHHHHHHHHHhhhhhhhhhhcccCcccccCCCCCCCCCCCCCCCCccccccccccccchhhhhhh
Q 001580 242 GMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEE 321 (1050)
Q Consensus 242 G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (1050)
|++++.|+++++.+..+.|..+.......++..++....+..... .+... . ...........+.+........+++
T Consensus 815 G~i~~~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~e~ 890 (1495)
T PLN03232 815 GMIKEEGTFAELSKSGSLFKKLMENAGKMDATQEVNTNDENILKL--GPTVT-I-DVSERNLGSTKQGKRGRSVLVKQEE 890 (1495)
T ss_pred CEEEEecCHHHHHhcchhHHHHHHhcccccccccccccccccccc--ccccc-c-cccccccccccccccchhhhhhHHH
Confidence 999999999999988888888776543211110000000000000 00000 0 0000000000001111122345566
Q ss_pred hhcccccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHH
Q 001580 322 RETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLAN 401 (1050)
Q Consensus 322 ~~~~~~~~~~~~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 401 (1050)
++.+.++++++++|.++.++.+.++++++++++.+.+......|+++|.+..........+|..+|.+++++..++.+++
T Consensus 891 ~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~l~~y~~l~~~~~~~~~~~ 970 (1495)
T PLN03232 891 RETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFTN 970 (1495)
T ss_pred HhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 77888999999999999887777777777777778888888899999987543222335677888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 402 SYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVST 481 (1050)
Q Consensus 402 ~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (1050)
.++....+.+++.++|.+++++++++|+.||+++++|+++||+++|+..++..++..+..++..++.++.+++++.++.+
T Consensus 971 ~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~ 1050 (1495)
T PLN03232 971 SFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVST 1050 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888888888877777777777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 482 MSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNM 561 (1050)
Q Consensus 482 ~~~~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (1050)
+.++.++|++++++..+.++.+..++.++....+++++++++.|+++|+.+||+|+.++++.+.+.+..+...+..+...
T Consensus 1051 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~ 1130 (1495)
T PLN03232 1051 ISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANT 1130 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777777778888888999999999999999999999999999999999999999888888888888777
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001580 562 GANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYI 641 (1050)
Q Consensus 562 ~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~ 641 (1050)
..+.|+.+.+..++.+++++++.+.+...+.......+...+|+++.++..+..++..+.+.+...+..+.+++|+.++.
T Consensus 1131 ~~~~wl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~ 1210 (1495)
T PLN03232 1131 SSNRWLTIRLETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYI 1210 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78889888887777666666665555543333323344566777888888888899999999999999999999999999
Q ss_pred cCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCc
Q 001580 642 ELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 721 (1050)
Q Consensus 642 ~~~~e~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~ 721 (1050)
+.|+|.+...+...+++.||..|.|+|+||+|+|+++.+++|+|+||+|+|||++|||||||||||||+++|+|+++|++
T Consensus 1211 ~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~ 1290 (1495)
T PLN03232 1211 DLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEK 1290 (1495)
T ss_pred cCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCC
Confidence 88877543222223344577778899999999997655579999999999999999999999999999999999999999
Q ss_pred cEEEECCeecCCCChHHHhhheEEEcCCcccccccHHHhcccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCC
Q 001580 722 GRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGE 801 (1050)
Q Consensus 722 G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~ 801 (1050)
|+|.+||+|+++++++++|++|+||||+|.+|++|||+||+++.+++|++++++++.++++++++.+|.||||.+|++|.
T Consensus 1291 G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~ 1370 (1495)
T PLN03232 1291 GRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGE 1370 (1495)
T ss_pred ceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCC
Confidence 99999999999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEe
Q 001580 802 NFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEY 881 (1050)
Q Consensus 802 ~LSgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~ 881 (1050)
+||||||||+||||||+++|+|||||||||+||++|++.|++.|++.++++|+|+||||++++.+||+|+||++|+|+|.
T Consensus 1371 ~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~ 1450 (1495)
T PLN03232 1371 NFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEY 1450 (1495)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred cChhHHhhcCCChHHHHHHhhccchHHHH
Q 001580 882 DTPEELLSNEGSSFSKMVQSTGAANAQYL 910 (1050)
Q Consensus 882 g~~~el~~~~~~~~~~~~~~~~~~~~~~~ 910 (1050)
|+|+||++++++.|+++++.++..+.+.+
T Consensus 1451 Gt~~eLl~~~~~~f~~l~~~~~~~~~~~~ 1479 (1495)
T PLN03232 1451 DSPQELLSRDTSAFFRMVHSTGPANAQYL 1479 (1495)
T ss_pred CCHHHHHhCCCCHHHHHHHHhChhhhHHH
Confidence 99999999877789999987665544433
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-127 Score=1261.09 Aligned_cols=892 Identities=42% Similarity=0.702 Sum_probs=739.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhcccCC--CCCCCC-CCCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcC
Q 001580 2 FVVAWQVVNANVSLKRMEEFLLAEEKILLP--NPPLTS-GLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGG 78 (1050)
Q Consensus 2 ~~~i~~~~~a~~s~~Ri~~fl~~~e~~~~~--~~~~~~-~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~ 78 (1050)
+..++++.++++|++||++||+.++..... .....+ ....|+++|++|+|+. .++++|+|+||++++|++++|+|+
T Consensus 594 ~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~l~~isl~i~~G~~v~IvG~ 672 (1522)
T TIGR00957 594 PMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWAR-DLPPTLNGITFSIPEGALVAVVGQ 672 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCC-CCCceeeeeEEEEcCCCEEEEECC
Confidence 567889999999999999999877643211 011111 1136999999999974 245799999999999999999999
Q ss_pred CCCcHHHHHHHHHcCCCCCCCCeeEEeCcEEEEecCCCCCcccHHHHhccCCCCCHHHHHHHHHHhCcHHHHhcCCCCCc
Q 001580 79 TGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDV 158 (1050)
Q Consensus 79 nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~TV~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~g~~ 158 (1050)
||||||||+++|+|+++|++|.+ .+.+.|+||||+||++++||+|||.||.++++++++++++.|++.++++.+|+||+
T Consensus 673 ~GsGKSTLl~~l~g~~~~~~G~i-~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~ 751 (1522)
T TIGR00957 673 VGCGKSSLLSALLAEMDKVEGHV-HMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDR 751 (1522)
T ss_pred CCCCHHHHHHHHhCCCccCCcEE-EECCEEEEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCC
Confidence 99999999999999999998765 46778999999999999999999999988888899999999999999999999999
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHcc--ccCCcEEEEeccCcchhhhcCEE
Q 001580 159 TEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG--ELSGKTRVLVTNQLHFLSQVDRI 236 (1050)
Q Consensus 159 t~vg~~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~--~~~g~t~ilvtH~~~~l~~~d~i 236 (1050)
|.+|++|.+|||||||||+||||||++|+++|||||||+||+++.+++++.+.+. ..+++|+|+|||+++++..||+|
T Consensus 752 t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~i 831 (1522)
T TIGR00957 752 TEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVI 831 (1522)
T ss_pred ceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEE
Confidence 9999999999999999999999999999999999999999999999999988742 34689999999999999999999
Q ss_pred EEEcCCeEeeccChhhhhcChHHHHHHHHHhhhhhhhh--hhc-c---cCccccc----C--C-----CCCCCCC---CC
Q 001580 237 ILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYV--EEK-E---DGETVDN----K--T-----SKPAANG---VD 296 (1050)
Q Consensus 237 ~~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~--~~~-~---~~~~~~~----~--~-----~~~~~~~---~~ 296 (1050)
++|++|++++.|+++++.+..+.|..+.......+... ++. . ..+.... . . ....... ..
T Consensus 832 i~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 911 (1522)
T TIGR00957 832 IVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASS 911 (1522)
T ss_pred EEecCCeEEeeCCHHHHHhcchhHHHHHHhhccccccccccccccccccccccccccccccccccccccchhhhhccccc
Confidence 99999999999999999877777777665332111000 000 0 0000000 0 0 0000000 00
Q ss_pred CCCCC---c--cc---cccccccccchhhhhhhhhcccccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 001580 297 NDLPK---E--AS---DTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSY 368 (1050)
Q Consensus 297 ~~~~~---~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 368 (1050)
..... . .. ...............+.+..|.+++.+++.|+++.|.. ..+++++++++...+....++|+++
T Consensus 912 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~Y~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~l~~ 990 (1522)
T TIGR00957 912 SDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAIGLF-ITFLSIFLFVCNHVSALASNYWLSL 990 (1522)
T ss_pred cccccccccccccccccccccccchhhhHHHHHHhcCcccHHHHHHHHHHcCHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0 00 00000000112234455667888999999999988754 3334444555666777788899999
Q ss_pred hccccccC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHh
Q 001580 369 WTDQSSLK--THGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAK 446 (1050)
Q Consensus 369 ~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~l~~rl~~ 446 (1050)
|.+..... .....++..+|.+++++..++.++..++....+.+++.++|+.++++++++|+.||+++++|+++||+++
T Consensus 991 w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~ 1070 (1522)
T TIGR00957 991 WTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSK 1070 (1522)
T ss_pred HhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHH
Confidence 98754211 1223455667888888888888888888889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 001580 447 DLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEA 526 (1050)
Q Consensus 447 D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 526 (1050)
|+..+|..++..+..++..++.++..++++.+..++.+++++|++++++....+|.+..++.++.....++++++++.|+
T Consensus 1071 Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~ 1150 (1522)
T TIGR00957 1071 ELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNET 1150 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999988888888888888777777777777776677777777777777888888999999999999999999999
Q ss_pred HchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHH
Q 001580 527 LNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLL 606 (1050)
Q Consensus 527 l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~g~~ 606 (1050)
++|+.+||+|+.++++.+.+.+..+...+..+.....+.|+.+++++++.+++.+++.+.+...+..+ .+.++++
T Consensus 1151 l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~g~l~~~ 1225 (1522)
T TIGR00957 1151 LLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAVISRHSLS-----AGLVGLS 1225 (1522)
T ss_pred hCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----HHHHHHH
Confidence 99999999999999999999999999988888877888999998888776665555555544333322 3456778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeee
Q 001580 607 LSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGL 686 (1050)
Q Consensus 607 l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~v 686 (1050)
+.|+..+..++..+.+.+...+..+.+++|+.++.+.++|.+...+...+++.||..|.|+|+||+|+|+++.+++|+|+
T Consensus 1226 l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~i 1305 (1522)
T TIGR00957 1226 VSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHI 1305 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccce
Confidence 88888888999999999999999999999999999887765422222334456888889999999999976555799999
Q ss_pred eEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEEEcCCcccccccHHHhcccCCC
Q 001580 687 SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE 766 (1050)
Q Consensus 687 s~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~ 766 (1050)
||+|+|||++|||||||||||||+++|+|+++|++|+|.+||+|+++++++++|++|+||||+|.+|++|||+||+++.+
T Consensus 1306 s~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~ 1385 (1522)
T TIGR00957 1306 NVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQ 1385 (1522)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHH
Q 001580 767 HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR 846 (1050)
Q Consensus 767 ~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~ 846 (1050)
++|++++++++.+++++++.++|.||||.++++|.+||||||||+||||||+++|+|||||||||+||++|++.|++.|+
T Consensus 1386 ~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~ 1465 (1522)
T TIGR00957 1386 YSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIR 1465 (1522)
T ss_pred CCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHhh
Q 001580 847 EEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 902 (1050)
Q Consensus 847 ~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~ 902 (1050)
+.++++|+|+||||++++.+||||+||++|+|+|.|+|+||+++ ++.|.++++++
T Consensus 1466 ~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~-~~~f~~l~~~~ 1520 (1522)
T TIGR00957 1466 TQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQ-RGIFYSMAKDA 1520 (1522)
T ss_pred HHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHc
Confidence 99899999999999999999999999999999999999999987 47888887653
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-126 Score=1153.73 Aligned_cols=877 Identities=26% Similarity=0.358 Sum_probs=653.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCCC--C-CCCCCCCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCC
Q 001580 5 AWQVVNANVSLKRMEEFLLAEEKILLPN--P-PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGE 81 (1050)
Q Consensus 5 i~~~~~a~~s~~Ri~~fl~~~e~~~~~~--~-~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGs 81 (1050)
+..+.+|+++..+|.+.++.....+... . ....-...|+++|++|+||++++.++|+|+||.|++|+.++|||+|||
T Consensus 311 l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGs 390 (1228)
T KOG0055|consen 311 LSAFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGS 390 (1228)
T ss_pred hHHHhccccchHHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCC
Confidence 5678899999999999999765443221 1 111223359999999999999988999999999999999999999999
Q ss_pred cHHHHHHHHHcCCCCCCCCeeE------------EeCcEEEEecCCCCCcccHHHHhccCCCC-CHHHHHHHHHHhCcHH
Q 001580 82 GKTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFGSAF-EPARYEKAIDVTSLQH 148 (1050)
Q Consensus 82 GKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~TV~eni~~g~~~-~~~~~~~~~~~~~l~~ 148 (1050)
||||++++|.++++|++|.+.. ++.+||.|.|+|.||+.||+|||.+|.+. ..++..++++.++..+
T Consensus 391 GKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~ 470 (1228)
T KOG0055|consen 391 GKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHD 470 (1228)
T ss_pred CHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHH
Confidence 9999999999999999987643 45679999999999999999999999753 4678889999999999
Q ss_pred HHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcc
Q 001580 149 DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLH 228 (1050)
Q Consensus 149 ~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~ 228 (1050)
.+..+|+|++|.+|++|.+|||||||||||||||+.+|+|||||||||+||+++++.+.+.| +....|+|.|+|+|+++
T Consensus 471 fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~AL-d~~~~grTTivVaHRLS 549 (1228)
T KOG0055|consen 471 FILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEAL-DKASKGRTTIVVAHRLS 549 (1228)
T ss_pred HHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHH-HHhhcCCeEEEEeeehh
Confidence 99999999999999999999999999999999999999999999999999999999887755 55567999999999999
Q ss_pred hhhhcCEEEEEcCCeEeeccChhhhhcChHHHHHHHHHhhhhhhhhh-hcccCcccccCCC-CCCCCCCCCCCC-Ccccc
Q 001580 229 FLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVE-EKEDGETVDNKTS-KPAANGVDNDLP-KEASD 305 (1050)
Q Consensus 229 ~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~ 305 (1050)
.+++||+|++|++|+|++.|+++||.+.++.|..+++.+........ +...........+ ..+........+ .....
T Consensus 550 tIrnaD~I~v~~~G~IvE~G~h~ELi~~~G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~ 629 (1228)
T KOG0055|consen 550 TIRNADKIAVMEEGKIVEQGTHDELIALGGIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGSNRSNL 629 (1228)
T ss_pred hhhccCEEEEEECCEEEEecCHHHHHhccchHHHHHHHHhhhhhhhccccccchhhhhhhccccccccccccCCcccccc
Confidence 99999999999999999999999999999999999886543221110 0000000000000 000000000000 00000
Q ss_pred --ccccccccchhhhhhhhhcccccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccc-----ccCCC
Q 001580 306 --TRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQS-----SLKTH 378 (1050)
Q Consensus 306 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~ 378 (1050)
.....+...... .+ +....++..+..+.+ .-++++++..++.++...........++...... .....
T Consensus 630 ~~~~~~~e~~~~~~-~~--~~~~~s~~~i~k~~~--pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~ 704 (1228)
T KOG0055|consen 630 LSVKPEGEDPEEPV-SE--EDEKVSFWRIFKLNK--PEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKR 704 (1228)
T ss_pred cccccccccccccc-cc--ccccccHHHHHHhcc--chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHH
Confidence 000000000000 00 001222222222221 1233333444444443333332222222211111 11111
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcc--cChhHHHHHHHhhHHHHHHHHH
Q 001580 379 GPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHT--NPLGRIINRFAKDLGDIDRNVA 456 (1050)
Q Consensus 379 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~--~~~G~l~~rl~~D~~~i~~~~~ 456 (1050)
....|.++|..+++...+..+++.+++.+.+.+...++|..+|++++++++.|||. |+ |.+.+|+.+|..++...+.
T Consensus 705 ~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~ 783 (1228)
T KOG0055|consen 705 EVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVG 783 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHH
Confidence 23347888999999999999999999999999999999999999999999999984 66 9999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhccchHHHHHHHHchHHH
Q 001580 457 VFVNMFMGQVSQLLSTFVLIGIVSTMSLW---AIMPLLLLFYAAYLYYQ-STAREVKRLDSITRSPVYAQFGEALNGLST 532 (1050)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~lll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ 532 (1050)
..+..++..+..++..+++.++.+|-..+ ++.|++.+....+..+. ....+.+. ..........|++.+++|
T Consensus 784 ~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~----~~~ea~~iA~eai~NIrT 859 (1228)
T KOG0055|consen 784 DRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKK----AYEEASKIAIEAVSNIRT 859 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH----HHHHHHHHHHHHHHhHHH
Confidence 88888888888877777777766664433 34455444433333222 22222221 122334567899999999
Q ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhH-HH---HHHHHHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHH
Q 001580 533 IRAYKAYDRMADINGKSMDKNIRYTLVNMGANR-WL---AIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLS 608 (1050)
Q Consensus 533 Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~ 608 (1050)
|++|..++++.+.+.+..+...+.......... .+ ...+.+..++.+|+++. ++..+..+....|.....+.++
T Consensus 860 V~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~--Li~~g~~~~~~~~~vf~~l~~t 937 (1228)
T KOG0055|consen 860 VAALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGAR--LISNGEMTFEDVFRVFMALSFT 937 (1228)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--HHhcCCcCHHHHHHHHHHHHHH
Confidence 999999999999999888776665544332211 11 11122223333333322 2334444444444333322221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCC-CCCceeeee
Q 001580 609 YALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLS 687 (1050)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~vs 687 (1050)
...+............+..|+.++.++++.++.-+...+. .....+..|.|+++||+|+||.+ ..++|+|+|
T Consensus 938 -----a~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~--~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~ 1010 (1228)
T KOG0055|consen 938 -----AMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDSTS--GGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLS 1010 (1228)
T ss_pred -----HHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCCCC--CCccccceeEEEEeeeEeeCCCCCCchhhcCCc
Confidence 1112222223334456677888999998866532211111 11122356889999999999743 247999999
Q ss_pred EEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEEEcCCcccccccHHHhcccCC-C
Q 001580 688 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-E 766 (1050)
Q Consensus 688 ~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~ 766 (1050)
|+|++|+.+||||||||||||++.+|.|+|+|++|.|.+||.|+++++++++|++||+|+|+|.||++||||||.++. +
T Consensus 1011 l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~ 1090 (1228)
T KOG0055|consen 1011 LSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEE 1090 (1228)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999883 4
Q ss_pred CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHH
Q 001580 767 HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR 846 (1050)
Q Consensus 767 ~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~ 846 (1050)
.+.+++.+|++.+++++||..+|+||||.+||+|.+||||||||||||||++|||+||||||+||+||.++++.++++|+
T Consensus 1091 vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd 1170 (1228)
T KOG0055|consen 1091 VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALD 1170 (1228)
T ss_pred CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHhh
Q 001580 847 EEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 902 (1050)
Q Consensus 847 ~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~ 902 (1050)
+...|+|+|+|+||++++++||.|+|+++|+|+|+|||++|+++ ++.|.++++.+
T Consensus 1171 ~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~~-~G~Y~~Lv~~q 1225 (1228)
T KOG0055|consen 1171 RAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLAK-RGIYFRLVQLQ 1225 (1228)
T ss_pred HhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHhC-CCchHHHhhhc
Confidence 99999999999999999999999999999999999999999994 67888888653
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-122 Score=1210.64 Aligned_cols=893 Identities=30% Similarity=0.535 Sum_probs=722.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCcEEEEeEEEEeCCC---------------------------
Q 001580 2 FVVAWQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSK--------------------------- 54 (1050)
Q Consensus 2 ~~~i~~~~~a~~s~~Ri~~fl~~~e~~~~~~~~~~~~~~~i~~~~~~f~~~~~--------------------------- 54 (1050)
|.++..+.++.+|++||++||..+|....+. ......++++|++|+|+..
T Consensus 356 p~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~---~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (1490)
T TIGR01271 356 PGAIQTWYDSLGAITKIQDFLCKEEYKTLEY---NLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFS 432 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccccccc---cCCCCceEEecceEecCCcccccccccccccccccccccccccccc
Confidence 4567777789999999999999887432111 1112359999999999631
Q ss_pred ----CCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeEEeCcEEEEecCCCCCcccHHHHhccCC
Q 001580 55 ----AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGS 130 (1050)
Q Consensus 55 ----~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~TV~eni~~g~ 130 (1050)
..+++|+|+||+|++|++++|+|||||||||||++|+|+++|++|.+. +.+.|+||+|+||++++||+|||.||.
T Consensus 433 ~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~-~~g~iayv~Q~~~l~~~Ti~eNI~~g~ 511 (1490)
T TIGR01271 433 NFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIK-HSGRISFSPQTSWIMPGTIKDNIIFGL 511 (1490)
T ss_pred ccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE-ECCEEEEEeCCCccCCccHHHHHHhcc
Confidence 024689999999999999999999999999999999999999987654 677899999999999999999999998
Q ss_pred CCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHH
Q 001580 131 AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 210 (1050)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l 210 (1050)
.++.+++.++++.|++.++++.+|.||.|.+|++|.+|||||||||+||||||.+|++|||||||++||+.+++++++.+
T Consensus 512 ~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~ 591 (1490)
T TIGR01271 512 SYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESC 591 (1490)
T ss_pred ccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 77778888999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred HccccCCcEEEEeccCcchhhhcCEEEEEcCCeEeeccChhhhhcChHHHHHHHHHhhhhhh------------------
Q 001580 211 IRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEE------------------ 272 (1050)
Q Consensus 211 ~~~~~~g~t~ilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~------------------ 272 (1050)
+....+|+|+|+|||+++++..||+|++|++|++++.|+++++....+.|...........+
T Consensus 592 l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1490)
T TIGR01271 592 LCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVS 671 (1490)
T ss_pred HHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhcChHHHHHHhccccccccccccccccccccccccc
Confidence 54444689999999999999999999999999999999999998765555554421100000
Q ss_pred hh--------h-hc------ccCcccc--------cC--------------------C-C----CCCCCC---------C
Q 001580 273 YV--------E-EK------EDGETVD--------NK--------------------T-S----KPAANG---------V 295 (1050)
Q Consensus 273 ~~--------~-~~------~~~~~~~--------~~--------------------~-~----~~~~~~---------~ 295 (1050)
.. + +. +...... +. . . .+.... .
T Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (1490)
T TIGR01271 672 IDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSIILNPIASARKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQG 751 (1490)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhccccccccccccccccc
Confidence 00 0 00 0000000 00 0 0 000000 0
Q ss_pred CCCCC-----------------------Ccc------c-----ccc--------------------c-cccc--------
Q 001580 296 DNDLP-----------------------KEA------S-----DTR--------------------K-TKEG-------- 312 (1050)
Q Consensus 296 ~~~~~-----------------------~~~------~-----~~~--------------------~-~~~~-------- 312 (1050)
....+ ... . ..+ . ..++
T Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (1490)
T TIGR01271 752 EESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGENRREQLQTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEI 831 (1490)
T ss_pred ccccccccccccccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00000 000 0 000 0 0000
Q ss_pred -----cchhhhhhhhhcccccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccc-------cc-C---
Q 001580 313 -----KSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQS-------SL-K--- 376 (1050)
Q Consensus 313 -----~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~-~--- 376 (1050)
.......+++..|.++|++|++|+++.|+++.++++++++++.+.+.....+|+..|.... .. .
T Consensus 832 ~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~ 911 (1490)
T TIGR01271 832 NEEDLKECFADERENVFETTTWNTYLRYITTNRNLVFVLIFCLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSP 911 (1490)
T ss_pred hhhhhhhhhhHHHHhhcCcccHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhHHHHhcccccccccccccccCCCc
Confidence 0011233455667889999999999887666556666666777888888899998886421 00 0
Q ss_pred --------CCChhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHhh
Q 001580 377 --------THGPLFY-NTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKD 447 (1050)
Q Consensus 377 --------~~~~~~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~l~~rl~~D 447 (1050)
.....+| .++|..+.++..++.+++.+++...+.+++.++|..+++++++.|+.||++++.|+++|||++|
T Consensus 912 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~D 991 (1490)
T TIGR01271 912 DVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKD 991 (1490)
T ss_pred cccccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHH
Confidence 0011222 4445555555667778888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 001580 448 LGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEAL 527 (1050)
Q Consensus 448 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l 527 (1050)
+..+|..++..+..++..++.++..++++++..++..++++|++++++....+|.+..++.++....+++++++++.|++
T Consensus 992 i~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl 1071 (1490)
T TIGR01271 992 MAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSL 1071 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 99999999888888888878888777777777777777777777777777778888889999999999999999999999
Q ss_pred chHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHH
Q 001580 528 NGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLL 607 (1050)
Q Consensus 528 ~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l 607 (1050)
+|+.+||+|+.++++.+.+.+..+...+..+......+|+.+++.+++.++...++.+.+... .. ....+|+++
T Consensus 1072 ~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~~-~~-----~~g~~g~~l 1145 (1490)
T TIGR01271 1072 KGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGTN-QD-----GEGEVGIIL 1145 (1490)
T ss_pred cCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC-----CccHHHHHH
Confidence 999999999999999999999888777777777777889988887766554443333322211 11 123467777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccC--------------CCCCCCCCCCCccEEEEEEEE
Q 001580 608 SYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIE--------------SNRPPPGWPSSGSIKFEDVVL 673 (1050)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~--------------~~~~~~~~~~~~~i~~~~v~~ 673 (1050)
+++..+..++..+.+.+..++..+.+++|+.++.+.|+|.+...+ ...+++.||..|.|+|+||+|
T Consensus 1146 ~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~ 1225 (1490)
T TIGR01271 1146 TLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTA 1225 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEE
Confidence 788888888888888888999999999999999988776432111 112234688888999999999
Q ss_pred EeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEEEcCCcccc
Q 001580 674 RYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF 753 (1050)
Q Consensus 674 ~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf 753 (1050)
+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+++ ++|+|.+||+|+.+++.+.+|++|+||||+|.+|
T Consensus 1226 ~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF 1304 (1490)
T TIGR01271 1226 KYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIF 1304 (1490)
T ss_pred EeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccC
Confidence 998655689999999999999999999999999999999999997 7999999999999999999999999999999999
Q ss_pred cccHHHhcccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCC
Q 001580 754 SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAV 833 (1050)
Q Consensus 754 ~~tv~~nl~~~~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~illLDEpts~L 833 (1050)
++|||+||+++..++|++++++++.+++.+++..+|.||||.++++|.+|||||||||||||||+++|+|||||||||+|
T Consensus 1305 ~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~l 1384 (1490)
T TIGR01271 1305 SGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHL 1384 (1490)
T ss_pred ccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccC
Confidence 99999999998888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHhhccch
Q 001580 834 DVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAAN 906 (1050)
Q Consensus 834 D~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~~~~~ 906 (1050)
|++|++.|++.|++.++++|||+||||++++..||+|+||++|+|++.|+|++|+++ ++.|+.+++......
T Consensus 1385 D~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~-~~~f~~l~~~~~~~~ 1456 (1490)
T TIGR01271 1385 DPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNE-TSLFKQAMSAADRLK 1456 (1490)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcC-CcHHHHHHHHhChhc
Confidence 999999999999999899999999999999999999999999999999999999974 678999988765543
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-122 Score=1210.24 Aligned_cols=839 Identities=36% Similarity=0.606 Sum_probs=683.6
Q ss_pred CCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeEEeCcEEEEecCCCCCcccHHHHhccCCCCCHHH
Q 001580 57 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPAR 136 (1050)
Q Consensus 57 ~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~TV~eni~~g~~~~~~~ 136 (1050)
+++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+. .++.||||||+||++++||+|||.|+.+.+.++
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~-~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~ 751 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVW-AERSIAYVPQQAWIMNATVRGNILFFDEEDAAR 751 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE-ECCeEEEEeCCCccCCCcHHHHHHcCChhhHHH
Confidence 5689999999999999999999999999999999999999987754 567899999999999999999999987767778
Q ss_pred HHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccC
Q 001580 137 YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS 216 (1050)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~ 216 (1050)
+.++++.|++.++++.+|+|+.|.+|++|.+|||||||||+|||||+.+|++|||||||++||+.+.+++++.++....+
T Consensus 752 ~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~ 831 (1560)
T PTZ00243 752 LADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALA 831 (1560)
T ss_pred HHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999876644446
Q ss_pred CcEEEEeccCcchhhhcCEEEEEcCCeEeeccChhhhhcChHHHHHHHHHhhhhhhhhhhcccCc--ccccCCCCCCCCC
Q 001580 217 GKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGE--TVDNKTSKPAANG 294 (1050)
Q Consensus 217 g~t~ilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 294 (1050)
|+|+|+|||+++++..+|+|++|++|++++.|+++++.+.+ .|..+........+..+.....+ .............
T Consensus 832 ~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 910 (1560)
T PTZ00243 832 GKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRTS-LYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHE 910 (1560)
T ss_pred CCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHhCh-HHHHHHHhhccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999999999999988654 45555432111000000000000 0000000000000
Q ss_pred CCCCCCCc--cccc-cccccccchhhhhhhhhcccccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 001580 295 VDNDLPKE--ASDT-RKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTD 371 (1050)
Q Consensus 295 ~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 371 (1050)
........ .... .........+...+.+..+.++|.+|++|+...|+....+++++++++++.+......|++.|.+
T Consensus 911 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~ 990 (1560)
T PTZ00243 911 PPVAKQEGNAEGGDGAALDAAAGRLMTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWST 990 (1560)
T ss_pred ccccccccccccccccccccccchhhhHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 00000000 0000 00000011223344556788899999999999887766666666667777888888899999986
Q ss_pred ccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHhhHHHH
Q 001580 372 QSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDI 451 (1050)
Q Consensus 372 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i 451 (1050)
.... .....|+.+|.++.++.++..+++.+.......+.+.++|..+++++++.|+.||++++.|+++||+++|+..+
T Consensus 991 ~~~~--~~~~~~l~~y~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~i 1068 (1560)
T PTZ00243 991 RSFK--LSAATYLYVYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDIL 1068 (1560)
T ss_pred cccC--CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHH
Confidence 4321 22344566677666666666677777777777788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHchHH
Q 001580 452 DRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLS 531 (1050)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ 531 (1050)
+..++..+..++..++.+++.++++.+..++.+++++|++++++.+..+|.+..++.++......+++++++.|+++|+.
T Consensus 1069 d~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~ 1148 (1560)
T PTZ00243 1069 DNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSA 1148 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHH
Confidence 99988877777777777777777777777766666666666666666778888899999999999999999999999999
Q ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh----cCccchhhhHHHHHHHHH
Q 001580 532 TIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQ----NGSAENQEAFASTMGLLL 607 (1050)
Q Consensus 532 ~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~----~~~~~~~~~~~~~~g~~l 607 (1050)
+||+|+.++.+.+.+.+..+...+..+.....+.|+.+++.++..++..+++.+.+.. .+.. -.+.+++++
T Consensus 1149 tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~g~l~~~l 1223 (1560)
T PTZ00243 1149 TITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQ-----EIGLVSLSL 1223 (1560)
T ss_pred HHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-----CHHHHHHHH
Confidence 9999999999999999998888888877777888999888877665544333332211 1111 134567777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCCCcccc-----------------------CCCCCC---CCC
Q 001580 608 SYALNITSLLTAVLRLASLAENSLNAVERVGNYIEL-PSEAPLVI-----------------------ESNRPP---PGW 660 (1050)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~-~~e~~~~~-----------------------~~~~~~---~~~ 660 (1050)
.++..+..++..+.+.+..++..+.+++|+.++++. |+++.... +...++ +.|
T Consensus 1224 ~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1303 (1560)
T PTZ00243 1224 TMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHP 1303 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCC
Confidence 788888889999999999999999999999999863 33221000 000111 123
Q ss_pred CCCccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHh
Q 001580 661 PSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 740 (1050)
Q Consensus 661 ~~~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r 740 (1050)
+..|.|+|+||+|+|+++.+++|+||||+|+|||++||||+||||||||+++|+|+++|++|+|.+||+|+++++.+++|
T Consensus 1304 ~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR 1383 (1560)
T PTZ00243 1304 VQAGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELR 1383 (1560)
T ss_pred CCCCeEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHH
Confidence 44578999999999976655799999999999999999999999999999999999999999999999999999999999
Q ss_pred hheEEEcCCcccccccHHHhcccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccC
Q 001580 741 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 820 (1050)
Q Consensus 741 ~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~ 820 (1050)
++|+||||+|.||++|||+||+++.+.+|++++++++.+++++++..+|.||||.+|++|.+|||||||||||||||+++
T Consensus 1384 ~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~ 1463 (1560)
T PTZ00243 1384 RQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKK 1463 (1560)
T ss_pred hcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999888899999999999999999999999999999999999999999999999999995
Q ss_pred -CCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHH
Q 001580 821 -SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 899 (1050)
Q Consensus 821 -p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~ 899 (1050)
|+|||||||||+||+++++.|++.|++.++++|+|+||||++++.+||+|+||++|+|++.|+|+||+++.++.|+.++
T Consensus 1464 ~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~ 1543 (1560)
T PTZ00243 1464 GSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMV 1543 (1560)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHH
Confidence 8999999999999999999999999998899999999999999999999999999999999999999987778899988
Q ss_pred Hhhcc
Q 001580 900 QSTGA 904 (1050)
Q Consensus 900 ~~~~~ 904 (1050)
+..+.
T Consensus 1544 ~~~~~ 1548 (1560)
T PTZ00243 1544 EALGR 1548 (1560)
T ss_pred HHhCh
Confidence 76543
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-112 Score=1108.85 Aligned_cols=889 Identities=20% Similarity=0.291 Sum_probs=631.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCC-CCCCCCCCCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCc
Q 001580 4 VAWQVVNANVSLKRMEEFLLAEEKILLP-NPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEG 82 (1050)
Q Consensus 4 ~i~~~~~a~~s~~Ri~~fl~~~e~~~~~-~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsG 82 (1050)
.+..+..|.+|.+||.++++.++..... .....+....|+++|++|+|+.++++++|+|+||+|++|+++||||+||||
T Consensus 344 ~~~~~~~a~~a~~ri~~ii~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsG 423 (1466)
T PTZ00265 344 NITEYMKSLEATNSLYEIINRKPLVENNDDGKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCG 423 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCccCCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCC
Confidence 4567889999999999999876532211 111111123599999999998654567999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCeeEE-------------eCcEEEEecCCCCCcccHHHHhccCCC------------------
Q 001580 83 KTSLISAMLGELPPVSDASAVI-------------RGTVAYVPQVSWIFNATVRDNILFGSA------------------ 131 (1050)
Q Consensus 83 KSTLl~~l~G~~~~~~g~~~~~-------------~~~i~~v~Q~~~l~~~TV~eni~~g~~------------------ 131 (1050)
||||+++|+|+++|++|.+..- ++.||||+|+|.+|+.||+|||.+|..
T Consensus 424 KSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~ 503 (1466)
T PTZ00265 424 KSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGND 503 (1466)
T ss_pred HHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhcccccccccc
Confidence 9999999999999998876541 235999999999999999999998741
Q ss_pred ----------------------------------------CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHH
Q 001580 132 ----------------------------------------FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 171 (1050)
Q Consensus 132 ----------------------------------------~~~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGG 171 (1050)
...+++..+++.+++.+.+..+|.|++|.+|++|.+||||
T Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGG 583 (1466)
T PTZ00265 504 SQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGG 583 (1466)
T ss_pred ccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHH
Confidence 1234566778888999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhhcCEEEEEcCC--------
Q 001580 172 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEG-------- 242 (1050)
Q Consensus 172 qrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~~d~i~~l~~G-------- 242 (1050)
|||||+|||||+++|+|||||||||+||+.+++.+.+.+.+... +|+|+|+|||+++.+..||+|++|++|
T Consensus 584 QkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~ 663 (1466)
T PTZ00265 584 QKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDV 663 (1466)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccc
Confidence 99999999999999999999999999999999999998876543 589999999999999999999999986
Q ss_pred ---------------------------------------eEeeccChhhhhc-ChHHHHHHHHHhhhhhhhhh-hc-ccC
Q 001580 243 ---------------------------------------MVKEEGTFEDLSN-NGELFQKLMENAGKMEEYVE-EK-EDG 280 (1050)
Q Consensus 243 ---------------------------------------~i~~~g~~~~l~~-~~~~~~~l~~~~~~~~~~~~-~~-~~~ 280 (1050)
+|+++|++++++. ..+.|..++..+........ +. ...
T Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~ 743 (1466)
T PTZ00265 664 DIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKD 743 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhccccccccccccccc
Confidence 5999999999997 57889888866532211100 00 000
Q ss_pred c--ccccCC-CC-CC-CCCC-----CCCCC-C--ccccc--c--ccccc--cchhhhhh-hhhc-ccccHHHHHHHHHHh
Q 001580 281 E--TVDNKT-SK-PA-ANGV-----DNDLP-K--EASDT--R--KTKEG--KSVLIKQE-ERET-GVVSFKVLSRYKDAL 339 (1050)
Q Consensus 281 ~--~~~~~~-~~-~~-~~~~-----~~~~~-~--~~~~~--~--~~~~~--~~~~~~~~-~~~~-~~~~~~~~~~y~~~~ 339 (1050)
. ...... .. .. .... ..... . ..... . ..... +....... .+.. ....+..+.++....
T Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (1466)
T PTZ00265 744 SDMKSSAYKDSERGYDPDEMNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSY 823 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHH
Confidence 0 000000 00 00 0000 00000 0 00000 0 00000 00000000 0000 000111111111111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccC---CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 340 GGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLK---THGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRL 416 (1050)
Q Consensus 340 g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l 416 (1050)
.+.+++.+++.++...+....+..++.+++..... ......+.+++++++++..++.++..++....+.+...++
T Consensus 824 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~l 901 (1466)
T PTZ00265 824 --KKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTM 901 (1466)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11133333344444444444444444443322111 1112345556666777788888999999999999999999
Q ss_pred HHHHHHHHHcCCchhhcc--cChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 417 HDAMLHSILRAPMVFFHT--NPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLF 494 (1050)
Q Consensus 417 ~~~l~~~ll~~p~~ff~~--~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~~ 494 (1050)
|..+|++++++|+.||++ +++|++++|+++|+..+...+...+..++..++.++..+++++++++...++++++++++
T Consensus 902 R~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~ 981 (1466)
T PTZ00265 902 KRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIF 981 (1466)
T ss_pred HHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999985 889999999999999999877766666666666666666666666665544444333222
Q ss_pred HHHHHHHHHH--HHHHHHH-------------HHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Q 001580 495 YAAYLYYQST--AREVKRL-------------DSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLV 559 (1050)
Q Consensus 495 ~~~~~~~~~~--~~~~~~~-------------~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~ 559 (1050)
...+....+. .++.++. .....+.....+.|+++|+++||+|+.++++.+.+.+..+...+....
T Consensus 982 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~ 1061 (1466)
T PTZ00265 982 MRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKR 1061 (1466)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 1111111010 0111111 111133456788899999999999999999888887777655544433
Q ss_pred HHHHhHHHHHHH----HHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 560 NMGANRWLAIRL----EIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVE 635 (1050)
Q Consensus 560 ~~~~~~~~~~~~----~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 635 (1050)
......+..... .+...+++|+++ +.+. .+.++....+... .++.....++..+.......+.+..+.+
T Consensus 1062 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~lv~-~g~it~g~l~~~~-----~~~~~~~~~~~~l~~~~~~~~~a~~a~~ 1134 (1466)
T PTZ00265 1062 KTLVNSMLWGFSQSAQLFINSFAYWFGS-FLIR-RGTILVDDFMKSL-----FTFLFTGSYAGKLMSLKGDSENAKLSFE 1134 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-cCCCCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222111111 122222233333 2222 3333322222111 1111122234455566677788899999
Q ss_pred HHHhhhcCCCCCccccCCCCCC-CCCCCCccEEEEEEEEEeCCC-CCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHH
Q 001580 636 RVGNYIELPSEAPLVIESNRPP-PGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL 713 (1050)
Q Consensus 636 R~~~~~~~~~e~~~~~~~~~~~-~~~~~~~~i~~~~v~~~y~~~-~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l 713 (1050)
|+.++++.+++.+......... ......+.|+|+||+|+|+++ ..++|+|+||+|+||+++|||||||||||||+++|
T Consensus 1135 ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL 1214 (1466)
T PTZ00265 1135 KYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLL 1214 (1466)
T ss_pred HHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 9999997654321111111100 011234679999999999743 24799999999999999999999999999999999
Q ss_pred hccccC------------------------------------------------------CccEEEECCeecCCCChHHH
Q 001580 714 FRIVEL------------------------------------------------------ERGRILIDGFDIAKFGLMDL 739 (1050)
Q Consensus 714 ~g~~~p------------------------------------------------------~~G~i~~~g~~i~~~~~~~~ 739 (1050)
+|+|+| ++|+|++||+|+++++..++
T Consensus 1215 ~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~l 1294 (1466)
T PTZ00265 1215 MRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDL 1294 (1466)
T ss_pred HHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHH
Confidence 999999 69999999999999999999
Q ss_pred hhheEEEcCCcccccccHHHhcccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHc
Q 001580 740 RKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 818 (1050)
Q Consensus 740 r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall 818 (1050)
|++||||||+|.||++||+|||.++. +.+++++++|++.+++++||..+|.||||.+|++|.+|||||||||||||||+
T Consensus 1295 R~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALl 1374 (1466)
T PTZ00265 1295 RNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALL 1374 (1466)
T ss_pred HhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999875 46899999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhhcCEEEEEeC----CEEE-EecChhHHhhcC
Q 001580 819 RRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDS----GRVL-EYDTPEELLSNE 891 (1050)
Q Consensus 819 ~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~vl~~----G~i~-~~g~~~el~~~~ 891 (1050)
++|+|||||||||+||+++++.|+++|++.. +++|+|+||||+++++.||+|+||++ |+++ +.|+|+||+++.
T Consensus 1375 r~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~ 1454 (1466)
T PTZ00265 1375 REPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQ 1454 (1466)
T ss_pred cCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcC
Confidence 9999999999999999999999999999874 68999999999999999999999999 9955 899999999855
Q ss_pred CChHHHHHHh
Q 001580 892 GSSFSKMVQS 901 (1050)
Q Consensus 892 ~~~~~~~~~~ 901 (1050)
++.|.++++.
T Consensus 1455 ~g~Y~~l~~~ 1464 (1466)
T PTZ00265 1455 DGVYKKYVKL 1464 (1466)
T ss_pred CChHHHHHhh
Confidence 6788887754
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-81 Score=724.13 Aligned_cols=546 Identities=27% Similarity=0.369 Sum_probs=441.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhcccccc-CCCCh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 344 VVLILLLCYFLTETLRVSSSTWLSYWTDQSSL-KTHGP--LFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAM 420 (1050)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~--~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 420 (1050)
.+...++++++........|.++...+|.... ..... .-...++.++.++..++++++.+++...+.+...++|..+
T Consensus 148 ~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~l 227 (716)
T KOG0058|consen 148 WLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQYAGERVVARLRTDL 227 (716)
T ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555566666666555544332 11111 1223455667778899999999999999999999999999
Q ss_pred HHHHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 421 LHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLY 500 (1050)
Q Consensus 421 ~~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~~~~~~~~ 500 (1050)
|++++++.+.|||.+.+|++++|+++|+..+.+.++..++..+....+.+..+.++++++|-...+.+..+++...+..+
T Consensus 228 F~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~v~~~~~~ 307 (716)
T KOG0058|consen 228 FRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLIVVPIVALVAKI 307 (716)
T ss_pred HHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998886665555555555666667
Q ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHH
Q 001580 501 YQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGAN---RWLAIRLEIVGGL 577 (1050)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l 577 (1050)
|.+..++..+..+.+-++..+...|.+++++|+|+|.+|.+..+.+.+..+...+......... .|..-....+..+
T Consensus 308 yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~~~ 387 (716)
T KOG0058|consen 308 YGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGSTNLLGNLAVL 387 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHHHH
Confidence 7777777777777777778888999999999999999998887777777666555443332222 1221111111122
Q ss_pred HHHHHHHHHHHhcCccchhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCC
Q 001580 578 MIWLTATFAVVQNGSAENQEAFASTMGLLLS---YALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESN 654 (1050)
Q Consensus 578 ~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~---~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~ 654 (1050)
.+++.+...+. .+. ++.|.+++ |...+...+..+...++.+.+...|.+|+.++++..+.-+.. .
T Consensus 388 siL~~Gg~Lv~-~g~--------mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~---G 455 (716)
T KOG0058|consen 388 SILFYGGHLVL-TGS--------LTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT---G 455 (716)
T ss_pred HHHHhccchhh-cCc--------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC---C
Confidence 22222222222 122 23344444 444556666777777788888889999999999876553321 1
Q ss_pred CCCCCCCCCccEEEEEEEEEeCCC-CCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCC
Q 001580 655 RPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK 733 (1050)
Q Consensus 655 ~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~ 733 (1050)
...|. ...|.|+|+||+|+|+.+ ..++|+|+||+|+|||+||+|||||+||||++++|.++|+|++|+|.+||+||++
T Consensus 456 ~~~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~ 534 (716)
T KOG0058|consen 456 TLAPD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISD 534 (716)
T ss_pred ccccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhh
Confidence 11122 456889999999999744 3479999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHhhheEEEcCCcccccccHHHhcccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001580 734 FGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 812 (1050)
Q Consensus 734 ~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~-~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~ 812 (1050)
+++..+|++||+|.|+|.||++||+|||.++.+ .+++++..+++.+++++||..+|+||+|.|||+|.+||||||||||
T Consensus 535 ~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIA 614 (716)
T KOG0058|consen 535 INHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIA 614 (716)
T ss_pred cCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHH
Confidence 999999999999999999999999999997754 5899999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCC
Q 001580 813 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 892 (1050)
Q Consensus 813 lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~ 892 (1050)
|||||++||.||||||+||+||.++|..++++|.+..+++|||+|+||++++++||+|+|+++|+|+|.|+|+||+++.+
T Consensus 615 IARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~ 694 (716)
T KOG0058|consen 615 IARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPN 694 (716)
T ss_pred HHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ChHHHHHHhh
Q 001580 893 SSFSKMVQST 902 (1050)
Q Consensus 893 ~~~~~~~~~~ 902 (1050)
+.|.++++..
T Consensus 695 gly~~Lv~~q 704 (716)
T KOG0058|consen 695 GLYAKLVQRQ 704 (716)
T ss_pred cHHHHHHHHh
Confidence 8999888753
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-75 Score=707.43 Aligned_cols=543 Identities=29% Similarity=0.436 Sum_probs=446.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhccccccCCCChhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 344 VVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYN--TIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAML 421 (1050)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 421 (1050)
.++-+++..++.+.+....|.+....+|............. ..+.+..+...++.+++.++....+.+....+..+++
T Consensus 155 ~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~ 234 (709)
T COG2274 155 LLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFF 234 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 44455566667777888888888888888766554433332 3344556678899999999999999999999999999
Q ss_pred HHHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 422 HSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYY 501 (1050)
Q Consensus 422 ~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~~~~~~~~~ 501 (1050)
+|++++|+.||.++++|++++|+ ++++.|..++...+...+..+...+..++++++.++...|+.+..++++......+
T Consensus 235 ~hll~Lpl~~f~~r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~ 313 (709)
T COG2274 235 RHLLRLPLSYFEKRSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIF 313 (709)
T ss_pred HHHHcCcHHHccCCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 57888888777766666666666666666666666666665555555555555555
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHH
Q 001580 502 QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRY----TLVNMGANRWLAIRLEIVGGL 577 (1050)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l 577 (1050)
.+..++..+......+...+.+.|++.|+.++|+.+.|.++...+.+......+. .......+.+.++...+...+
T Consensus 314 ~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~ 393 (709)
T COG2274 314 QPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVL 393 (709)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554444455556677899999999999999999998877777666655544 444445555555555666666
Q ss_pred HHHHHHHHHHHhcCccchhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCC
Q 001580 578 MIWLTATFAVVQNGSAENQEAFASTMGLLLSYAL---NITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESN 654 (1050)
Q Consensus 578 ~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~---~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~ 654 (1050)
++|+++...+-. ..++|.+++|.+ ++..++..+...+..++....+.+|+.++++.|+|.+...
T Consensus 394 iL~~G~~lVl~~----------~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~--- 460 (709)
T COG2274 394 ILWFGAILVLEG----------ELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDK--- 460 (709)
T ss_pred HHHHHHHHHhcC----------CcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc---
Confidence 666666554432 234555555443 4566777777888888999999999999999988753211
Q ss_pred CCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCC
Q 001580 655 RPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF 734 (1050)
Q Consensus 655 ~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~ 734 (1050)
.....++..|.|+++||+|+|+++.+++|+|+|++|+|||++||||+||||||||+|+|+|+|+|++|+|++||.|+.++
T Consensus 461 ~~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i 540 (709)
T COG2274 461 TLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDI 540 (709)
T ss_pred ccccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhc
Confidence 12233456788999999999987766899999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHhhheEEEcCCcccccccHHHhcccCCCC-CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001580 735 GLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEH-SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 813 (1050)
Q Consensus 735 ~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~-~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~l 813 (1050)
++..+|++|||||||+.+|++||+||+.++.+. +++++.++++.++++++|.++|.||+|.+||+|.+|||||||||+|
T Consensus 541 ~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlal 620 (709)
T COG2274 541 DLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLAL 620 (709)
T ss_pred CHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999987654 6799999999999999999999999999999999999999999999
Q ss_pred HHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCC
Q 001580 814 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGS 893 (1050)
Q Consensus 814 Arall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~ 893 (1050)
||||+++|+|||||||||+||+++++.|.+.|.+...++|+|+||||+++++.||||+||++|+|+++|+|+|+++. ++
T Consensus 621 ARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~-~g 699 (709)
T COG2274 621 ARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ-GG 699 (709)
T ss_pred HHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh-cC
Confidence 99999999999999999999999999999999999899999999999999999999999999999999999999998 66
Q ss_pred hHHHHHHh
Q 001580 894 SFSKMVQS 901 (1050)
Q Consensus 894 ~~~~~~~~ 901 (1050)
.|.++++.
T Consensus 700 ~y~~l~~~ 707 (709)
T COG2274 700 LYARLYQQ 707 (709)
T ss_pred hHHHHHhc
Confidence 78777653
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-71 Score=676.47 Aligned_cols=549 Identities=20% Similarity=0.260 Sum_probs=406.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhccccccCC-C-C-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 345 VLILLLCYFLTETLRVSSSTWLSYWTDQSSLKT-H-G-PLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAML 421 (1050)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~-~-~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 421 (1050)
+++.+++.++...+....|..+....|...... . . ...+..++.++.+...++.+.+.++....+.+...++|..+|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 103 (588)
T PRK11174 24 LNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFKAGQHIRQQIRQQVL 103 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555556666655555321111 1 1 112233344455567777888888889999999999999999
Q ss_pred HHHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 422 HSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYY 501 (1050)
Q Consensus 422 ~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~~~~~~~~~ 501 (1050)
+++++.|..+|+++++|++++|+++|+..+...+...+..++..++.++..+++++.+++...++++..+++.+.....+
T Consensus 104 ~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~ 183 (588)
T PRK11174 104 DKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILLGTAPLIPLFMALV 183 (588)
T ss_pred HHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998877666666666666665555555555544433333333322333333
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-
Q 001580 502 QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIW- 580 (1050)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 580 (1050)
.+..+...+......+.+.+.+.|.++|+++||+|+.++++.+.+.+..+...+..........+......++..+...
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (588)
T PRK11174 184 GMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSSAVLEFFASISIAL 263 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445567788899999999999999999998887776666555444333222222222222222211111
Q ss_pred --HHHHHHHHhcCccchhh---hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCC
Q 001580 581 --LTATFAVVQNGSAENQE---AFA-STMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESN 654 (1050)
Q Consensus 581 --~~~~~~v~~~~~~~~~~---~~~-~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~ 654 (1050)
+.+.+.+. +..+... .+. ......+.+...+..++..+............+.+|+.++++.+++.+.. ..
T Consensus 264 ~~~~~~~~~~--g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~--~~ 339 (588)
T PRK11174 264 VAVYFGFSYL--GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQQ--GE 339 (588)
T ss_pred HHHHHHHHHh--cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC--Cc
Confidence 11111111 2211110 011 11111123334556677777777778888899999999999876542211 11
Q ss_pred CCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCC
Q 001580 655 RPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF 734 (1050)
Q Consensus 655 ~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~ 734 (1050)
...+ .+..+.|+++||+|.|.++ +++|+|+||+|+||+++||+||||||||||+++|+|+| |++|+|.+||+|+.++
T Consensus 340 ~~~~-~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~ 416 (588)
T PRK11174 340 KELA-SNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELREL 416 (588)
T ss_pred cccC-CCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccC
Confidence 0001 0123469999999877544 47999999999999999999999999999999999999 9999999999999999
Q ss_pred ChHHHhhheEEEcCCcccccccHHHhcccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001580 735 GLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 813 (1050)
Q Consensus 735 ~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~l 813 (1050)
++.++|++|+||||+|.+|++||+|||.++. +.++++++++++.++++++++++|+|++|.+|++|.+|||||||||+|
T Consensus 417 ~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRial 496 (588)
T PRK11174 417 DPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLAL 496 (588)
T ss_pred CHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999874 478999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCC
Q 001580 814 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGS 893 (1050)
Q Consensus 814 Arall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~ 893 (1050)
|||++++|+|||||||||+||+++++.+++.|++..+++|+|+||||++++..||+|++|++|++++.|+|+||+++. +
T Consensus 497 ARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~~-~ 575 (588)
T PRK11174 497 ARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQAG-G 575 (588)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHhcc-h
Confidence 999999999999999999999999999999999988899999999999999999999999999999999999999864 5
Q ss_pred hHHHHHHh
Q 001580 894 SFSKMVQS 901 (1050)
Q Consensus 894 ~~~~~~~~ 901 (1050)
.|.+++..
T Consensus 576 ~y~~l~~~ 583 (588)
T PRK11174 576 LFATLLAH 583 (588)
T ss_pred HHHHHHHH
Confidence 77777654
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-72 Score=645.93 Aligned_cols=464 Identities=25% Similarity=0.395 Sum_probs=351.8
Q ss_pred cEEEEeEEEEeCCCCCC-CceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC----CCCeeE------------
Q 001580 41 AISIRNGYFSWDSKAER-PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV----SDASAV------------ 103 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~-~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~----~g~~~~------------ 103 (1050)
.++++|+++.|...++. ++++||||++.+||++||||+|||||||+.++|.|++++. +|.+..
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 69999999999865332 5999999999999999999999999999999999999876 344321
Q ss_pred ----EeCcEEEEecCCC-CCc--ccHHHHhcc----CCCCC-H---HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCC
Q 001580 104 ----IRGTVAYVPQVSW-IFN--ATVRDNILF----GSAFE-P---ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI 168 (1050)
Q Consensus 104 ----~~~~i~~v~Q~~~-l~~--~TV~eni~~----g~~~~-~---~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~L 168 (1050)
..+.|+|+||+|. .+| .||.+.|.- ..... . .+..+.++..++.+.... ....++|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 1235999999986 343 477766642 11111 1 223334445555443322 2345799
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccc-cCCcEEEEeccCcchhhh-cCEEEEEcCCeEee
Q 001580 169 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKE 246 (1050)
Q Consensus 169 SGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~-~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~ 246 (1050)
||||||||.||+||+.+|++||+||||++||+.++..|.+.+++.. ..|.++|+||||+..+.+ ||||+||.+|++++
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999888765 469999999999999876 79999999999999
Q ss_pred ccChhhhhcChH-HHHH-HHHHhhhhhhhhhhcccCcccccCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhhc
Q 001580 247 EGTFEDLSNNGE-LFQK-LMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERET 324 (1050)
Q Consensus 247 ~g~~~~l~~~~~-~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (1050)
.|+.+++++++. -|.. ++. ..|
T Consensus 236 ~G~~~~i~~~p~hpYT~~Ll~--------------------------------a~p------------------------ 259 (539)
T COG1123 236 TGPTEEILSNPQHPYTRGLLA--------------------------------AVP------------------------ 259 (539)
T ss_pred ecCHHHHHhccCCcccHHHHh--------------------------------hCC------------------------
Confidence 999988875421 0000 000 000
Q ss_pred ccccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 325 GVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYW 404 (1050)
Q Consensus 325 ~~~~~~~~~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~ 404 (1050)
T Consensus 260 -------------------------------------------------------------------------------- 259 (539)
T COG1123 260 -------------------------------------------------------------------------------- 259 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 405 LIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSL 484 (1050)
Q Consensus 405 ~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (1050)
.. ..
T Consensus 260 ------------------------~~--~~-------------------------------------------------- 263 (539)
T COG1123 260 ------------------------RL--GD-------------------------------------------------- 263 (539)
T ss_pred ------------------------Cc--cc--------------------------------------------------
Confidence 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001580 485 WAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGAN 564 (1050)
Q Consensus 485 ~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (1050)
T Consensus 264 -------------------------------------------------------------------------------- 263 (539)
T COG1123 264 -------------------------------------------------------------------------------- 263 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 001580 565 RWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELP 644 (1050)
Q Consensus 565 ~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~ 644 (1050)
. .....+
T Consensus 264 ---------------------------------------------------------------------~----~~~~~~ 270 (539)
T COG1123 264 ---------------------------------------------------------------------E----KIIRLP 270 (539)
T ss_pred ---------------------------------------------------------------------c----cccccc
Confidence 0 000000
Q ss_pred CCCccccCCCCCCCCCCCCccEEEEEEEEEeCC---------CCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhc
Q 001580 645 SEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRP---------ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 715 (1050)
Q Consensus 645 ~e~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~---------~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g 715 (1050)
...+ . +....++++|+++.|.. +...+++||||+|.+||++||||+||||||||.++|+|
T Consensus 271 ~~~~--------~---~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~g 339 (539)
T COG1123 271 RRGP--------L---RAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAG 339 (539)
T ss_pred cccc--------c---ccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhC
Confidence 0000 0 01224899999999963 12468999999999999999999999999999999999
Q ss_pred cccCCccEEEECCee--cCCCChHHHhhheEEEcCCcc--ccc-ccHHHhccc----CCCCC----HHHHHHHHHHhcHH
Q 001580 716 IVELERGRILIDGFD--IAKFGLMDLRKILGIIPQSPV--LFS-GTVRFNLDP----FSEHS----DADLWEALERAHLK 782 (1050)
Q Consensus 716 ~~~p~~G~i~~~g~~--i~~~~~~~~r~~i~~v~Q~~~--lf~-~tv~~nl~~----~~~~~----~~~~~~~l~~~~~~ 782 (1050)
+++|++|+|.++|.+ .+.-.....|+++-+++|||. |.. .||+++|.. ..... .+++.+.++..++.
T Consensus 340 L~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~ 419 (539)
T COG1123 340 LLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLP 419 (539)
T ss_pred CCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCC
Confidence 999999999999987 232224457789999999996 433 499988741 11111 12344444444443
Q ss_pred HHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecC
Q 001580 783 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHR 860 (1050)
Q Consensus 783 ~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~ 860 (1050)
. ......+..||||||||+||||||+.+|++||+|||||+||+-+.+.+.+.|+++.+ |.|.|+||||
T Consensus 420 ~----------~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHD 489 (539)
T COG1123 420 P----------EFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHD 489 (539)
T ss_pred H----------HHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCC
Confidence 2 145666789999999999999999999999999999999999999999999998753 7999999999
Q ss_pred chhhhh-cCEEEEEeCCEEEEecChhHHhhcCCChHHHHH
Q 001580 861 LNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 899 (1050)
Q Consensus 861 ~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~ 899 (1050)
+..++. ||||+||++|+|+|.|+.+++.+.+...|.+..
T Consensus 490 l~vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~h~Ytr~L 529 (539)
T COG1123 490 LAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKL 529 (539)
T ss_pred HHHHHhhCceEEEEECCeEEEeCCHHHHhcCCCChHHHHH
Confidence 999988 999999999999999999999988776676544
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-70 Score=664.00 Aligned_cols=539 Identities=31% Similarity=0.437 Sum_probs=407.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 001580 349 LLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAP 428 (1050)
Q Consensus 349 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p 428 (1050)
.++.++...+....+.++....+...........+...+.++.+...++.+...++....+.+...++|..+++++++.|
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~ 99 (567)
T COG1132 20 ILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLP 99 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33334444445555555554444333111112223333444445566777777777777889999999999999999999
Q ss_pred chhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 001580 429 MVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPL-LLLFYAAYLYYQSTARE 507 (1050)
Q Consensus 429 ~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-ll~~~~~~~~~~~~~~~ 507 (1050)
+.+|++++.|++++|+++|+..++..+......+...+..++..+++++...+...++++.. +++.+....+ .+..+.
T Consensus 100 ~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~-~~~~~~ 178 (567)
T COG1132 100 LSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLL-ARKSRK 178 (567)
T ss_pred HHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 99999999999999999999999988777644444445555566666666655443333332 2333333333 223355
Q ss_pred HHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHH
Q 001580 508 VKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWL----AIRLEIVGGLMIWLTA 583 (1050)
Q Consensus 508 ~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~ 583 (1050)
..+......+.+.+.+.|.++|++++|+|+.++...+.+....+...+............ .+...+...++++++
T Consensus 179 ~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 257 (567)
T COG1132 179 LSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALG- 257 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 555555666788999999999999999999988766555554444443332222222222 222222222222222
Q ss_pred HHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCC
Q 001580 584 TFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSS 663 (1050)
Q Consensus 584 ~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~ 663 (1050)
.+.+.. +..+ .+.+..++.+...+..++..+.......+....+.+|+.++++.+++... .... .....
T Consensus 258 ~~~~~~-~~~~-----~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~~--~~~~~ 326 (567)
T COG1132 258 GFLVLS-GSLT-----VGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVED---PPDP--LKDTI 326 (567)
T ss_pred HHHHHc-CCCC-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---CCCC--CCCCC
Confidence 222221 1111 22344445556666777777777888888889999999999987544211 1111 12334
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhhe
Q 001580 664 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 743 (1050)
Q Consensus 664 ~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i 743 (1050)
+.|+++||+|+|+++ +++|+|+||+++|||++||||||||||||++++|.|+|+|++|+|++||+|+++++...+|++|
T Consensus 327 ~~I~f~~vsf~y~~~-~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I 405 (567)
T COG1132 327 GSIEFENVSFSYPGK-KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRI 405 (567)
T ss_pred CeEEEEEEEEEcCCC-CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhc
Confidence 669999999999753 3799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCcccccccHHHhcccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 001580 744 GIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 822 (1050)
Q Consensus 744 ~~v~Q~~~lf~~tv~~nl~~~~~-~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~ 822 (1050)
+||||++.||++||++||.++.+ .++++++++++.++++++++++|+||||.+|++|.+|||||||||+||||++++|+
T Consensus 406 ~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ 485 (567)
T COG1132 406 GIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPP 485 (567)
T ss_pred cEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998876 69999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHhh
Q 001580 823 ILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 902 (1050)
Q Consensus 823 illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~ 902 (1050)
|||||||||+||+++++.+++.+++..+++|+|+||||++++.+||+|+||++|+|++.|+|+||+++ ++.|.++++.+
T Consensus 486 ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~-~g~y~~l~~~~ 564 (567)
T COG1132 486 ILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK-GGLYARLYQAQ 564 (567)
T ss_pred EEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc-CCHHHHHHHHh
Confidence 99999999999999999999999988788999999999999999999999999999999999999997 67899888754
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-72 Score=686.16 Aligned_cols=486 Identities=22% Similarity=0.315 Sum_probs=351.3
Q ss_pred CCcEEEEeEEEEeCCC-CCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE--------------
Q 001580 39 LPAISIRNGYFSWDSK-AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------- 103 (1050)
Q Consensus 39 ~~~i~~~~~~f~~~~~-~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------- 103 (1050)
.+.|+++|++++|+.. ..+++|+||||++++|+++||+|+||||||||+++|+|+++|++|.+..
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~ 89 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIE 89 (623)
T ss_pred CceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccc
Confidence 3479999999999632 2347999999999999999999999999999999999999998775431
Q ss_pred -----------Ee-CcEEEEecCC--CCC-cccHHHHhccCCC----CCH----HHHHHHHHHhCcHHHHhcCCCCCccc
Q 001580 104 -----------IR-GTVAYVPQVS--WIF-NATVRDNILFGSA----FEP----ARYEKAIDVTSLQHDLDLLPGGDVTE 160 (1050)
Q Consensus 104 -----------~~-~~i~~v~Q~~--~l~-~~TV~eni~~g~~----~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~ 160 (1050)
.+ ..||||+|+| .++ ..||.||+.++.. ... ++..+.++..++... ...
T Consensus 90 ~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~ 161 (623)
T PRK10261 90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTI 161 (623)
T ss_pred cccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhH
Confidence 01 2599999998 455 5799999987521 121 122233444444210 012
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhh-cCEEEE
Q 001580 161 IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIIL 238 (1050)
Q Consensus 161 vg~~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~-~d~i~~ 238 (1050)
......+|||||||||+|||||+.+|++|||||||++||+.++..+.+.+.+... .|+|+|+||||++++.. ||||++
T Consensus 162 ~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~v 241 (623)
T PRK10261 162 LSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLV 241 (623)
T ss_pred HhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE
Confidence 2345578999999999999999999999999999999999999999998877654 48999999999999865 799999
Q ss_pred EcCCeEeeccChhhhhcChH-HHH-HHHHHhhhhhhhhhhcccCcccccCCCCCCCCCCCCCCCCccccccccccccchh
Q 001580 239 VHEGMVKEEGTFEDLSNNGE-LFQ-KLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVL 316 (1050)
Q Consensus 239 l~~G~i~~~g~~~~l~~~~~-~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (1050)
|++|++++.|+++++...+. .|. .+... .+.... . .+.
T Consensus 242 l~~G~i~~~g~~~~~~~~~~~~~~~~l~~~----------------------~~~~~~---------~------~~~--- 281 (623)
T PRK10261 242 MYQGEAVETGSVEQIFHAPQHPYTRALLAA----------------------VPQLGA---------M------KGL--- 281 (623)
T ss_pred eeCCeecccCCHHHhhcCCCChhhhhhhhc----------------------cCcccc---------c------ccc---
Confidence 99999999998877643210 000 00000 000000 0 000
Q ss_pred hhhhhhhcccccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCCCChhHHHHHHHHHHHHHHH
Q 001580 317 IKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVL 396 (1050)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 396 (1050)
T Consensus 282 -------------------------------------------------------------------------------- 281 (623)
T PRK10261 282 -------------------------------------------------------------------------------- 281 (623)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 397 VTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLI 476 (1050)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (1050)
..+
T Consensus 282 -----------------------------~~~------------------------------------------------ 284 (623)
T PRK10261 282 -----------------------------DYP------------------------------------------------ 284 (623)
T ss_pred -----------------------------cCC------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHH
Q 001580 477 GIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRY 556 (1050)
Q Consensus 477 ~~~~~~~~~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~ 556 (1050)
...+ .
T Consensus 285 --------------------------------------~~~~---~---------------------------------- 289 (623)
T PRK10261 285 --------------------------------------RRFP---L---------------------------------- 289 (623)
T ss_pred --------------------------------------cccc---c----------------------------------
Confidence 0000 0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 557 TLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVER 636 (1050)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R 636 (1050)
. . ...++
T Consensus 290 ---------------------------------------~-------------------------------~---~~~~~ 296 (623)
T PRK10261 290 ---------------------------------------I-------------------------------S---LEHPA 296 (623)
T ss_pred ---------------------------------------c-------------------------------c---ccccc
Confidence 0 0 00000
Q ss_pred HHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCC---------CCCceeeeeEEecCCcEEEEECCCCCCHH
Q 001580 637 VGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE---------LPPVLHGLSFTIPPSDKVGIVGRTGAGKS 707 (1050)
Q Consensus 637 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~---------~~~~l~~vs~~i~~Ge~~~ivG~~GsGKS 707 (1050)
. ..+...+ . ... .....++++|+++.|+.. ..++|+||||+|++||++||+|+||||||
T Consensus 297 ~----~~~~~~~----~-~~~---~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKS 364 (623)
T PRK10261 297 K----QEPPIEQ----D-TVV---DGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKS 364 (623)
T ss_pred c----cCccccc----c-ccc---CCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHH
Confidence 0 0000000 0 000 011248999999999521 13699999999999999999999999999
Q ss_pred HHHHHHhccccCCccEEEECCeecCCCChH---HHhhheEEEcCCc--cccc-ccHHHhcccC---CCC-CHHHHHHHHH
Q 001580 708 SMLNTLFRIVELERGRILIDGFDIAKFGLM---DLRKILGIIPQSP--VLFS-GTVRFNLDPF---SEH-SDADLWEALE 777 (1050)
Q Consensus 708 Tll~~l~g~~~p~~G~i~~~g~~i~~~~~~---~~r~~i~~v~Q~~--~lf~-~tv~~nl~~~---~~~-~~~~~~~~l~ 777 (1050)
||+++|+|+++|++|+|.++|.++...+.. .+|++|+||||++ .++. .||.+|+.+. ... ...+..
T Consensus 365 TLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~---- 440 (623)
T PRK10261 365 TTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAA---- 440 (623)
T ss_pred HHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHH----
Confidence 999999999999999999999999876543 3567899999998 3665 4999998531 111 111111
Q ss_pred HhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEE
Q 001580 778 RAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTM 854 (1050)
Q Consensus 778 ~~~~~~~i~~~p~gl~-t~v~~~~~~LSgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tv 854 (1050)
..+.++++.+ |++ ........+|||||||||+|||||+.+|+||||||||++||+.++..+.+.|+++.+ +.||
T Consensus 441 -~~~~~~L~~~--gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tv 517 (623)
T PRK10261 441 -ARVAWLLERV--GLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAY 517 (623)
T ss_pred -HHHHHHHHHc--CCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 1122334432 443 344556678999999999999999999999999999999999999999999988643 7899
Q ss_pred EEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCChHH
Q 001580 855 LIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 896 (1050)
Q Consensus 855 i~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~~ 896 (1050)
|+||||++.+.. ||||++|++|+|++.|+++++...+...|.
T Consensus 518 i~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~p~~~~~ 560 (623)
T PRK10261 518 LFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYT 560 (623)
T ss_pred EEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcCCCCHHH
Confidence 999999999977 999999999999999999999865444443
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-69 Score=703.90 Aligned_cols=310 Identities=17% Similarity=0.273 Sum_probs=224.4
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhhe
Q 001580 664 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 743 (1050)
Q Consensus 664 ~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i 743 (1050)
..|+++|++++|+++..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+ +....|++|
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~I 2014 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNM 2014 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhE
Confidence 3599999999997533479999999999999999999999999999999999999999999999999865 455678899
Q ss_pred EEEcCCcccccc-cHHHhcccCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHcc
Q 001580 744 GIIPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 819 (1050)
Q Consensus 744 ~~v~Q~~~lf~~-tv~~nl~~~~~---~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~ 819 (1050)
|||||++.++.. |++|||.++.. ...+++.+. +.+.++. .|+..........|||||||||+|||||+.
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~-----v~~lLe~--lgL~~~~dk~~~~LSGGqKqRLslA~ALi~ 2087 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKV-----ANWSIQS--LGLSLYADRLAGTYSGGNKRKLSTAIALIG 2087 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHH--cCCHHHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 999999998865 99999965321 122222111 1223333 245555556667899999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCChHHH
Q 001580 820 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSK 897 (1050)
Q Consensus 820 ~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~ 897 (1050)
+|+||||||||+|||+.+++.+++.|++.. +|+|||++||++++++. ||||++|++|++++.|++++++++.+..|.-
T Consensus 2088 ~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g~g~~l 2167 (2272)
T TIGR01257 2088 CPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDGYIV 2167 (2272)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHhCCceEE
Confidence 999999999999999999999999999864 57999999999999987 9999999999999999999998776533221
Q ss_pred HHHhhccchHHHHHHHhhcccchhhhhhhhhccchhhhHHHhhHHHH--HhccchhhcccccCccchhchhhhhhhHHhh
Q 001580 898 MVQSTGAANAQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAA--AAQYALAVSLTSSHNDLQRLEVEDQNNILKK 975 (1050)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 975 (1050)
.+....... ... +. .++-.++........ .........+. +......+....|++
T Consensus 2168 ~i~~~~~~~-~~~--------------~~---~~~v~~~i~~~fp~a~~~e~~~~~l~~~-----i~~~~~~~if~~L~~ 2224 (2272)
T TIGR01257 2168 TMKIKSPKD-DLL--------------PD---LNPVEQFFQGNFPGSVQRERHYNMLQFQ-----VSSSSLARIFQLLIS 2224 (2272)
T ss_pred EEEEcCcch-hhh--------------hH---HHHHHHHHhhcCccceeeccccceEEEE-----eCcccHHHHHHHHHh
Confidence 000000000 000 00 000000000000000 00000000010 011245667788999
Q ss_pred cchhh-hhHHHhhcCCCchhhhhhhccccc
Q 001580 976 TKDAV-VTLQGVLEGKHDKEIEESLNQHEV 1004 (1050)
Q Consensus 976 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 1004 (1050)
.|..+ +..|++++++||+||++..++...
T Consensus 2225 ~k~~l~I~dysvsqtSLE~VFl~l~~~q~~ 2254 (2272)
T TIGR01257 2225 HKDSLLIEEYSVTQTTLDQVFVNFAKQQTE 2254 (2272)
T ss_pred cCCCCCeEEEEcCCCCHHHHHHHHhccccc
Confidence 98777 999999999999999999976543
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-69 Score=669.72 Aligned_cols=542 Identities=24% Similarity=0.303 Sum_probs=408.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhccccccCCCChhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 344 VVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLF--YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAML 421 (1050)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 421 (1050)
.++..+++.++...+....|.++....|..........+ +...++++.+...++.+++.++....+.+...+++..++
T Consensus 137 ~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 216 (686)
T TIGR03797 137 DLLAILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVW 216 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666777776666654322211112 233344555667788899999999999999999999999
Q ss_pred HHHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 422 HSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYY 501 (1050)
Q Consensus 422 ~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~~~~~~~~~ 501 (1050)
+++++.|+.||++++.|++++|+. |+..+...+...+...+..+...+..+++++..++...++++.++++.++...++
T Consensus 217 ~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~ 295 (686)
T TIGR03797 217 DRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVL 295 (686)
T ss_pred HHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999997 7888877665544444434333444444444555544443333333333333333
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHH
Q 001580 502 QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEI---VGGLM 578 (1050)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~ 578 (1050)
.+..+...+......++..+.+.|.++|+.+||+++.++++...+.+......+..........+....... +..++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 375 (686)
T TIGR03797 296 GLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAA 375 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444455677889999999999999999998887777766665554444333333333322222 22222
Q ss_pred HHHHHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCC
Q 001580 579 IWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPP 658 (1050)
Q Consensus 579 ~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~ 658 (1050)
+++++.+.+. .+..+.. .+..+..+...+..++..+.......+....+.+|+.++++.+++.+.. ...
T Consensus 376 il~~g~~lv~-~g~ltiG-----~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~---~~~-- 444 (686)
T TIGR03797 376 LFAAAISLLG-GAGLSLG-----SFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA---KTD-- 444 (686)
T ss_pred HHHHHHHHHH-cCCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC---cCC--
Confidence 2233333332 2322211 1111223334555667777777788888999999999999876553211 111
Q ss_pred CCCCCccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHH
Q 001580 659 GWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD 738 (1050)
Q Consensus 659 ~~~~~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~ 738 (1050)
..+..+.|+++||+|+|++..+++|+|+||+|+|||++||+|+||||||||+++|+|+|+|++|+|++||+|++++++.+
T Consensus 445 ~~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~ 524 (686)
T TIGR03797 445 PGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQA 524 (686)
T ss_pred CCCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHH
Confidence 11224579999999999754457999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhheEEEcCCcccccccHHHhcccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHc
Q 001580 739 LRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 818 (1050)
Q Consensus 739 ~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall 818 (1050)
+|++||||||+|.+|++||+|||.++.+.++++++++++.++++++++++|.|++|.+|++|.+|||||||||+||||++
T Consensus 525 lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll 604 (686)
T TIGR03797 525 VRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALV 604 (686)
T ss_pred HHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999987668899999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHH
Q 001580 819 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 898 (1050)
Q Consensus 819 ~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~ 898 (1050)
++|+|||||||||+||+++++.+.+.|++. ++|+|+||||++.+..||+|++|++|+|++.|+|+||+++ ++.|..+
T Consensus 605 ~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~-~~~y~~l 681 (686)
T TIGR03797 605 RKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR-EGLFAQL 681 (686)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhC-CcHHHHH
Confidence 999999999999999999999999999885 6899999999999999999999999999999999999986 4677776
Q ss_pred HH
Q 001580 899 VQ 900 (1050)
Q Consensus 899 ~~ 900 (1050)
+.
T Consensus 682 ~~ 683 (686)
T TIGR03797 682 AR 683 (686)
T ss_pred HH
Confidence 64
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-69 Score=603.69 Aligned_cols=503 Identities=21% Similarity=0.323 Sum_probs=403.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001580 389 LLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQ 468 (1050)
Q Consensus 389 ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~ 468 (1050)
+++++..+..+..-...+....+.-.++|.++|+++...+..-..+...|+++||+..|++.+|..+-..+..++..+..
T Consensus 66 ~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~ 145 (573)
T COG4987 66 GLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVL 145 (573)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHH
Confidence 34555666777777777888888999999999999999999999999999999999999999999776666655555554
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHH
Q 001580 469 LLSTFVLIGIVSTM-SLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADING 547 (1050)
Q Consensus 469 ~~~~~~~~~~~~~~-~~~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~ 547 (1050)
...+.+...++++. .+.+.+.++++.+++...+++..+...+.....++.+.+++.+++.|...++.|+..+.+.+.+.
T Consensus 146 ~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~ 225 (573)
T COG4987 146 IAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALE 225 (573)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHH
Confidence 44444444444433 33333333333444455555556666666667788899999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 001580 548 KSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVL-RLASL 626 (1050)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~-~~~~~ 626 (1050)
.......+..........|..+.+.++.++++.....|.....+. +....-.+.++++++| .....+.++. .....
T Consensus 226 ~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~-G~~~~~~aa~~ll~~f--~~~eaf~~L~~~A~~~ 302 (573)
T COG4987 226 ATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGA-GALAQPGAALALLVIF--AALEAFEPLAPGAFQH 302 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC-CCcchhHHHHHHHHHH--HHHHHHhhhcchhHHH
Confidence 888888888887778888888888777776665443333322111 1111111222222222 2233333333 34455
Q ss_pred HHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCH
Q 001580 627 AENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGK 706 (1050)
Q Consensus 627 ~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGK 706 (1050)
......+..|+.++.+.+++.... +.+ .+. ....++++||+|+|+++.+++|+|+||++++||++||+|+|||||
T Consensus 303 lgq~~~Sa~Rl~~i~~q~~e~~~~-~~~--~~~--~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGK 377 (573)
T COG4987 303 LGQVIASARRLNDILDQKPEVTFP-DEQ--TAT--TGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGK 377 (573)
T ss_pred hhHHHHHHHHHhhhccCCcccCCC-ccc--cCC--ccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCH
Confidence 667778999999988776654322 111 111 112699999999998877789999999999999999999999999
Q ss_pred HHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEEEcCCcccccccHHHhcccCC-CCCHHHHHHHHHHhcHHHHH
Q 001580 707 SSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAI 785 (1050)
Q Consensus 707 STll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~~~~~l~~~~~~~~i 785 (1050)
||++++|+|.++|++|+|.++|.++..++..++|+.|++++|.+.+|++|+|+||...+ +.+|++++++++++++++++
T Consensus 378 STllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~ 457 (573)
T COG4987 378 STLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLL 457 (573)
T ss_pred HHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998765 46999999999999999999
Q ss_pred HHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhh
Q 001580 786 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTII 865 (1050)
Q Consensus 786 ~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~ 865 (1050)
+..|+||+|++||+|..||||||||++|||+|+++.+++||||||.|||+.|++.+.+.|.+..+|+|+|+||||+..++
T Consensus 458 ~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le 537 (573)
T COG4987 458 ESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLE 537 (573)
T ss_pred HhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHH
Q 001580 866 DCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 900 (1050)
Q Consensus 866 ~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~ 900 (1050)
.||||+||++|+++++|+|.+|+++ .+.|.++++
T Consensus 538 ~~drIivl~~Gkiie~G~~~~Ll~~-~g~~~~l~q 571 (573)
T COG4987 538 RMDRIIVLDNGKIIEEGTHAELLAN-NGRYKRLYQ 571 (573)
T ss_pred hcCEEEEEECCeeeecCCHHhhhcc-ccHHHHHhc
Confidence 9999999999999999999999985 457877654
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-68 Score=610.31 Aligned_cols=509 Identities=24% Similarity=0.325 Sum_probs=411.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHH
Q 001580 384 NTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFM 463 (1050)
Q Consensus 384 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~ 463 (1050)
...+.++.+...++.+.+.......+......+|..+++++.+.+..+-...++|+..+.+...+++++.++..+++.++
T Consensus 43 ~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~ 122 (559)
T COG4988 43 LILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMF 122 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555667778888888888999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHH
Q 001580 464 GQVSQLLSTFVLIGIVSTM---SLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYD 540 (1050)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~---~~~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~ 540 (1050)
......+.+++.+++..|. .+++.+|++++++++. ....+...+....+-.++.++|.+.++|+.|+|+|+..+
T Consensus 123 ~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilv---g~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~ 199 (559)
T COG4988 123 LSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILV---GLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTE 199 (559)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccH
Confidence 8777777777666666554 3445556665554433 223333333444455678899999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001580 541 RMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAV 620 (1050)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~ 620 (1050)
...+...+......+.+..........++.++++..+.+.+++.+..+..-..+....+.+.+. +..+.-++.|+..+
T Consensus 200 ~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~--LiLAPEff~PlR~l 277 (559)
T COG4988 200 ATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFV--LILAPEFFQPLRDL 277 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHH--HHHhHHHHHHHHHH
Confidence 8887777777777777766666677777788887777666666554332111011112222222 22233455566666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEEC
Q 001580 621 LRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVG 700 (1050)
Q Consensus 621 ~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG 700 (1050)
-..+....+...+.+.+..+.+.|.+.+...+. ....+.....+.++|++++|++++ ++++|+||++++|+++||||
T Consensus 278 Gs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~--~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~talvG 354 (559)
T COG4988 278 GSFFHAAAAGEAAADKLFTLLESPVATPGSGEK--AEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTALVG 354 (559)
T ss_pred HHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccc--cccccCCCceeeecceEEecCCCC-cccCCceeEecCCcEEEEEC
Confidence 666666677778888898888776654322111 011121223456669999998765 79999999999999999999
Q ss_pred CCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEEEcCCcccccccHHHhcccCCC-CCHHHHHHHHHHh
Q 001580 701 RTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERA 779 (1050)
Q Consensus 701 ~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~-~~~~~~~~~l~~~ 779 (1050)
+||||||||+++|+|+++|++|+|.+||++++++++..+|+++++|||+|.+|++|+||||.+++. .+++++.++++.+
T Consensus 355 ~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a 434 (559)
T COG4988 355 ASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQA 434 (559)
T ss_pred CCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999998876 6899999999999
Q ss_pred cHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeec
Q 001580 780 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAH 859 (1050)
Q Consensus 780 ~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH 859 (1050)
++.+++.. |.|+||.+||+|.+|||||+|||+||||++++++++||||||++||.+|++.|.+.|.++.+++|||+|||
T Consensus 435 ~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itH 513 (559)
T COG4988 435 GLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITH 513 (559)
T ss_pred cHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEc
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHhh
Q 001580 860 RLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 902 (1050)
Q Consensus 860 ~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~ 902 (1050)
|++.+.+||+|+||++|++++.|+|++|.++. +.|..++..+
T Consensus 514 rl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~-~~y~~l~~~q 555 (559)
T COG4988 514 RLEDAADADRIVVLDNGRLVEQGTHEELSEKQ-GLYANLLKQQ 555 (559)
T ss_pred ChHHHhcCCEEEEecCCceeccCCHHHHhhcC-cHHHHHHHHH
Confidence 99999999999999999999999999998864 5788887653
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-68 Score=667.23 Aligned_cols=543 Identities=23% Similarity=0.324 Sum_probs=407.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhccccccCCCChh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 347 ILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPL--FYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSI 424 (1050)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 424 (1050)
..+++.++...+....|.++....|.......... .+...+.++.+...++.+++.++....+.+...+++..+++++
T Consensus 158 ~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 237 (710)
T TIGR03796 158 YLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHI 237 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555556666666666665432222221 2223344445667788889999999999999999999999999
Q ss_pred HcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 425 LRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQST 504 (1050)
Q Consensus 425 l~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~~~~~~~~~~~~ 504 (1050)
++.|+.+|+++++|++++|+..| ..+...+...+...+..+..++..+++++.+++...++++.++++.+++...+.+.
T Consensus 238 l~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~ 316 (710)
T TIGR03796 238 LRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRR 316 (710)
T ss_pred HcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988 56776665555455555555555555555555555444444444444444444444
Q ss_pred HHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHH
Q 001580 505 AREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEI---VGGLMIWL 581 (1050)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~ 581 (1050)
.++..+......+...+.+.|.++|+.+||+++.++.+.+.+.+......+..........+....... +..+++++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~ 396 (710)
T TIGR03796 317 RVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILV 396 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444556678889999999999999999998877777655554444333222222222222222 22222222
Q ss_pred HHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCC--C-CCCC
Q 001580 582 TATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIES--N-RPPP 658 (1050)
Q Consensus 582 ~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~--~-~~~~ 658 (1050)
++.+.+. .+.++. +.+..++.+...+..++..+......+.....+.+|+.++++.+++.+..... . ...+
T Consensus 397 ~g~~~v~-~g~lt~-----G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~ 470 (710)
T TIGR03796 397 VGGLRVM-EGQLTI-----GMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEP 470 (710)
T ss_pred HHHHHHH-cCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccccc
Confidence 2333332 232221 11222333444556677777777788888999999999999877654321100 0 0001
Q ss_pred CCCCCccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHH
Q 001580 659 GWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD 738 (1050)
Q Consensus 659 ~~~~~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~ 738 (1050)
.++..+.|+++||+|+|++..+++|+|+||+|+|||++||+||||||||||+++|+|+|+|++|+|.+||+|++++++.+
T Consensus 471 ~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~ 550 (710)
T TIGR03796 471 SPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREV 550 (710)
T ss_pred CCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHH
Confidence 02234679999999999865457999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhheEEEcCCcccccccHHHhcccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHH
Q 001580 739 LRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 817 (1050)
Q Consensus 739 ~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAral 817 (1050)
+|++|+||||+|.+|++||+|||.++. +.++++++++++.+++++++.++|.|++|.+|++|.+|||||||||+||||+
T Consensus 551 lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARal 630 (710)
T TIGR03796 551 LANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARAL 630 (710)
T ss_pred HHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999998765 4689999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHH
Q 001580 818 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSK 897 (1050)
Q Consensus 818 l~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~ 897 (1050)
+++|+|||||||||+||+++++.+.+.|++ .++|+|+||||++++..||+|++|++|++++.|+|+||+++. +.|.+
T Consensus 631 l~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~~-~~y~~ 707 (710)
T TIGR03796 631 VRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVG-GAYAR 707 (710)
T ss_pred hhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHcC-CcHHH
Confidence 999999999999999999999999999987 689999999999999999999999999999999999999864 56766
Q ss_pred HH
Q 001580 898 MV 899 (1050)
Q Consensus 898 ~~ 899 (1050)
++
T Consensus 708 l~ 709 (710)
T TIGR03796 708 LI 709 (710)
T ss_pred Hh
Confidence 54
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-68 Score=663.56 Aligned_cols=541 Identities=24% Similarity=0.360 Sum_probs=413.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhccccccCCCChhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 345 VLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLF--YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLH 422 (1050)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 422 (1050)
++..+++.++...+....|.+....+|..........+ ...++.++.++..++.+++.++......+...++|..+++
T Consensus 163 l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~ 242 (711)
T TIGR00958 163 LISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFR 242 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666666676666665543322111111 2233444555667777888888888999999999999999
Q ss_pred HHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 423 SILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQ 502 (1050)
Q Consensus 423 ~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~~~~~~~~~~ 502 (1050)
+++++|+.||++++.|++++|+++|+..++..+...+..++..+..++..+++++.+++...++++..+++.+.+...+.
T Consensus 243 ~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~ 322 (711)
T TIGR00958 243 SLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFG 322 (711)
T ss_pred HHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988887777777777777776666666666554444433333333444444
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHH
Q 001580 503 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMG---ANRWLAIRLEIVGGLMI 579 (1050)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~ 579 (1050)
+..++..+......+...+.+.|+++|+++||+|+.++++.+.+.+..+...+....... ...|....+..+..+++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 402 (711)
T TIGR00958 323 KRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLV 402 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455566778899999999999999999988777776665554433322211 11222222222222233
Q ss_pred HHHHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCC
Q 001580 580 WLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPG 659 (1050)
Q Consensus 580 ~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~ 659 (1050)
+..+.+.+. .+..+. ..+..++.+...+..++..+............+.+|+.++++.+++.+.. .. ...
T Consensus 403 l~~g~~lv~-~g~it~-----G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~---~~-~~~ 472 (711)
T TIGR00958 403 LYYGGQLVL-TGKVSS-----GNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT---GT-LAP 472 (711)
T ss_pred HHHHHHHHH-cCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC---CC-CCC
Confidence 333333332 233221 22233344556677777888888888889999999999999776543211 11 111
Q ss_pred CCCCccEEEEEEEEEeCCC-CCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHH
Q 001580 660 WPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD 738 (1050)
Q Consensus 660 ~~~~~~i~~~~v~~~y~~~-~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~ 738 (1050)
++..+.|+++||+|+|++. .+++|+|+||+|+|||++||+||||||||||+++|+|+|+|++|+|.+||+|+++++...
T Consensus 473 ~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~ 552 (711)
T TIGR00958 473 LNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHY 552 (711)
T ss_pred CCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHH
Confidence 2234679999999999743 247999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhheEEEcCCcccccccHHHhcccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHH
Q 001580 739 LRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 817 (1050)
Q Consensus 739 ~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAral 817 (1050)
+|++|+||||+|.+|++||+|||.++. ..++++++++++.++++++++++|.|+||.+|++|.+|||||||||+||||+
T Consensus 553 lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARAL 632 (711)
T TIGR00958 553 LHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARAL 632 (711)
T ss_pred HHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999764 4678999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHH
Q 001580 818 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSK 897 (1050)
Q Consensus 818 l~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~ 897 (1050)
+++|+|||||||||+||+++++.+++ . ...+++|+|+||||++++..||+|++|++|+|++.|+|+||+++. +.|.+
T Consensus 633 l~~p~ILILDEpTSaLD~~te~~i~~-~-~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~-~~y~~ 709 (711)
T TIGR00958 633 VRKPRVLILDEATSALDAECEQLLQE-S-RSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQ-GCYKH 709 (711)
T ss_pred hcCCCEEEEEccccccCHHHHHHHHH-h-hccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCC-CchHh
Confidence 99999999999999999999999999 3 334789999999999999999999999999999999999999864 46664
Q ss_pred H
Q 001580 898 M 898 (1050)
Q Consensus 898 ~ 898 (1050)
+
T Consensus 710 l 710 (711)
T TIGR00958 710 L 710 (711)
T ss_pred c
Confidence 3
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-71 Score=665.07 Aligned_cols=449 Identities=20% Similarity=0.306 Sum_probs=339.4
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCC--CCCCeeE-------------E
Q 001580 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP--VSDASAV-------------I 104 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~--~~g~~~~-------------~ 104 (1050)
++|+++|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++| ++|.+.. .
T Consensus 4 ~~l~~~nl~~~~~---~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~ 80 (506)
T PRK13549 4 YLLEMKNITKTFG---GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTE 80 (506)
T ss_pred ceEEEeeeEEEeC---CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHH
Confidence 3699999999996 35799999999999999999999999999999999999986 6776532 1
Q ss_pred eCcEEEEecCCCCC-cccHHHHhccCCCC------CHHH----HHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHH
Q 001580 105 RGTVAYVPQVSWIF-NATVRDNILFGSAF------EPAR----YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 173 (1050)
Q Consensus 105 ~~~i~~v~Q~~~l~-~~TV~eni~~g~~~------~~~~----~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqr 173 (1050)
+..+|||+|++.++ ..||+||+.++... +... ....++..++.. .......+||||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqk 149 (506)
T PRK13549 81 RAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDI-----------NPATPVGNLGLGQQ 149 (506)
T ss_pred HCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCC-----------CcccchhhCCHHHH
Confidence 24599999999876 67999999886421 1111 112222222211 12344578999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhh
Q 001580 174 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 252 (1050)
Q Consensus 174 qRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 252 (1050)
|||+|||||+.+|++|||||||++||+.++.++++.+.+...+|+|+|++|||++++.. ||++++|++|+++..|+.++
T Consensus 150 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 229 (506)
T PRK13549 150 QLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAG 229 (506)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeeccccc
Confidence 99999999999999999999999999999999999887765568999999999999875 79999999999987665433
Q ss_pred hhcChHHHHHHHHHhhhhhhhhhhcccCcccccCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhhcccccHHHH
Q 001580 253 LSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVL 332 (1050)
Q Consensus 253 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (1050)
+.... ..
T Consensus 230 ~~~~~-----~~-------------------------------------------------------------------- 236 (506)
T PRK13549 230 MTEDD-----II-------------------------------------------------------------------- 236 (506)
T ss_pred CCHHH-----HH--------------------------------------------------------------------
Confidence 21000 00
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 333 SRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYA 412 (1050)
Q Consensus 333 ~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 412 (1050)
.
T Consensus 237 ~------------------------------------------------------------------------------- 237 (506)
T PRK13549 237 T------------------------------------------------------------------------------- 237 (506)
T ss_pred H-------------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 413 AKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLL 492 (1050)
Q Consensus 413 ~~~l~~~l~~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll 492 (1050)
++
T Consensus 238 ------------------------------~~------------------------------------------------ 239 (506)
T PRK13549 238 ------------------------------MM------------------------------------------------ 239 (506)
T ss_pred ------------------------------Hh------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001580 493 LFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLE 572 (1050)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (1050)
+
T Consensus 240 --------~----------------------------------------------------------------------- 240 (506)
T PRK13549 240 --------V----------------------------------------------------------------------- 240 (506)
T ss_pred --------h-----------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccC
Q 001580 573 IVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIE 652 (1050)
Q Consensus 573 ~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~ 652 (1050)
+.. .. . ..+...+
T Consensus 241 -----------------~~~-----------------------------------------~~---~--~~~~~~~---- 253 (506)
T PRK13549 241 -----------------GRE-----------------------------------------LT---A--LYPREPH---- 253 (506)
T ss_pred -----------------CcC-----------------------------------------cc---c--ccccccc----
Confidence 000 00 0 0000000
Q ss_pred CCCCCCCCCCCccEEEEEEEEEeCC-CCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhcccc-CCccEEEECCee
Q 001580 653 SNRPPPGWPSSGSIKFEDVVLRYRP-ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LERGRILIDGFD 730 (1050)
Q Consensus 653 ~~~~~~~~~~~~~i~~~~v~~~y~~-~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~-p~~G~i~~~g~~ 730 (1050)
. +....++++|++++|+. +..++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 254 ----~---~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~ 326 (506)
T PRK13549 254 ----T---IGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKP 326 (506)
T ss_pred ----C---CCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEE
Confidence 0 01124899999999942 12369999999999999999999999999999999999999 599999999999
Q ss_pred cCCCCh-HHHhhheEEEcCCc---cccc-ccHHHhcccCC--CCCH-HHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCC
Q 001580 731 IAKFGL-MDLRKILGIIPQSP---VLFS-GTVRFNLDPFS--EHSD-ADLWEALERAHLKDAIRRNSLGLD-AQVSEAGE 801 (1050)
Q Consensus 731 i~~~~~-~~~r~~i~~v~Q~~---~lf~-~tv~~nl~~~~--~~~~-~~~~~~l~~~~~~~~i~~~p~gl~-t~v~~~~~ 801 (1050)
+...+. ...++.++|+||++ .+|. .|+.+|+.+.. .... ..+........+.++++.+ |+. ........
T Consensus 327 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~ 404 (506)
T PRK13549 327 VKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRL--KVKTASPELAIA 404 (506)
T ss_pred CCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhc--CccCCCcccccc
Confidence 865543 34567799999996 3554 59999996421 1100 0000001112244555554 443 23456667
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEE
Q 001580 802 NFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVL 879 (1050)
Q Consensus 802 ~LSgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~ 879 (1050)
+||||||||++|||||+.+|+||||||||++||+.+.+.+++.|+++. +++|||+|||+++++.. ||++++|++|+++
T Consensus 405 ~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~ 484 (506)
T PRK13549 405 RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLK 484 (506)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 899999999999999999999999999999999999999999998864 47899999999999877 9999999999999
Q ss_pred EecChhHH
Q 001580 880 EYDTPEEL 887 (1050)
Q Consensus 880 ~~g~~~el 887 (1050)
..|+++++
T Consensus 485 ~~~~~~~~ 492 (506)
T PRK13549 485 GDLINHNL 492 (506)
T ss_pred EEeccccC
Confidence 99988876
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-68 Score=647.36 Aligned_cols=496 Identities=24% Similarity=0.338 Sum_probs=389.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001580 389 LLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQ 468 (1050)
Q Consensus 389 ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~ 468 (1050)
++.++..++.++..++....+.+...++|.++|++++++|+.+|++++.|++++|+++|++.+...+...+..++..++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~ 147 (574)
T PRK11160 68 GAAIGRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVV 147 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777788888888899999999999999999999999999999999999999999999999887777777776666
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHH
Q 001580 469 LLSTFVLIGIVSTMSLWAIM-PLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADING 547 (1050)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~-~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~ 547 (1050)
++.++++++++.+...++++ ++++++.....++.+..+...+......+.+.+.+.|.++|++++|+|+.++++.+.+.
T Consensus 148 ~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~ 227 (574)
T PRK11160 148 ILVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLE 227 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHH
Confidence 66666666666655444332 22222222223333443444444455667788899999999999999999998887777
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHhcCccchhhhHHHHHHHHHHH----HHHHHHHHHHH
Q 001580 548 KSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIW---LTATFAVVQNGSAENQEAFASTMGLLLSY----ALNITSLLTAV 620 (1050)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~v~~~~~~~~~~~~~~~~g~~l~~----~~~~~~~~~~~ 620 (1050)
+..+...+..........+......++..+... .++.+.+ .+..+ .|.++++ ......++.++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~--~g~~t--------~g~l~a~~~~~~~~~~~~~~~l 297 (574)
T PRK11160 228 QTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGGV--GGNAQ--------PGALIALFVFAALAAFEALMPV 297 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccc--------hhHHHHHHHHHHHHHHHHHHHH
Confidence 766665554444333333333322322222111 1111211 22221 2222221 12233456666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEEC
Q 001580 621 LRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVG 700 (1050)
Q Consensus 621 ~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG 700 (1050)
............+.+|+.++++.+++.+.. ..... .+..+.|+++||+|+|+++.+++|+|+||+++|||++||+|
T Consensus 298 ~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~--~~~~~--~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG 373 (574)
T PRK11160 298 AGAFQHLGQVIASARRINEITEQKPEVTFP--TTSTA--AADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLG 373 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--cccCC--CCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEEC
Confidence 677777788899999999999876542111 01111 12345699999999997543479999999999999999999
Q ss_pred CCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEEEcCCcccccccHHHhcccCC-CCCHHHHHHHHHHh
Q 001580 701 RTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERA 779 (1050)
Q Consensus 701 ~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~~~~~l~~~ 779 (1050)
|||||||||+++|+|+++|++|+|.+||+++++++..++|++|+||||+|.+|++|++|||.++. +.++++++++++.+
T Consensus 374 ~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~ 453 (574)
T PRK11160 374 RTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQV 453 (574)
T ss_pred CCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999998765 46889999999999
Q ss_pred cHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeec
Q 001580 780 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAH 859 (1050)
Q Consensus 780 ~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH 859 (1050)
++++++++ |.||||.+|++|.+||||||||++||||++++|+|||||||||+||+++++.+++.|++..+++|+|+|||
T Consensus 454 ~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitH 532 (574)
T PRK11160 454 GLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITH 532 (574)
T ss_pred CCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred CchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHH
Q 001580 860 RLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 900 (1050)
Q Consensus 860 ~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~ 900 (1050)
|++++..||+|++|++|++++.|+|+||+++. +.|.++++
T Consensus 533 r~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~-g~y~~l~~ 572 (574)
T PRK11160 533 RLTGLEQFDRICVMDNGQIIEQGTHQELLAQQ-GRYYQLKQ 572 (574)
T ss_pred ChhHHHhCCEEEEEeCCeEEEeCCHHHHHhcC-cHHHHHHh
Confidence 99999999999999999999999999999864 57877664
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-68 Score=665.31 Aligned_cols=542 Identities=21% Similarity=0.317 Sum_probs=407.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhccccccCCCChh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 346 LILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPL--FYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHS 423 (1050)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 423 (1050)
+..+++.++...+....|.++..+.|.......... .+...+.++.+...++.+++.++....+.+...+++..++++
T Consensus 159 ~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 238 (708)
T TIGR01193 159 VNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKH 238 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555556666677777777665433222111 122233344556677888899999999999999999999999
Q ss_pred HHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 424 ILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQS 503 (1050)
Q Consensus 424 ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~~~~~~~~~~~ 503 (1050)
++++|+.||++++.|++++|++ |...+.+.+.......+..+...+..+++++++++...++++..+++++++...+.+
T Consensus 239 ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~ 317 (708)
T TIGR01193 239 LFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKR 317 (708)
T ss_pred HHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 888887766554444444444444444444444444444433333333344444555
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHH
Q 001580 504 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRW---LAIRLEIVGGLMIW 580 (1050)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~ 580 (1050)
..++..+......+...+.+.|+++|+++||+++.++++.+.+.+......+..........+ ....+..+..++++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il 397 (708)
T TIGR01193 318 TFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVIL 397 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555566677888999999999999999999887777666555443333222221111 12222222233333
Q ss_pred HHHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCC
Q 001580 581 LTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGW 660 (1050)
Q Consensus 581 ~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~ 660 (1050)
+++.+.+. .+..+.. .+..+..+...+..++..+.......+....+.+|+.++++.+++.+... .....+
T Consensus 398 ~~g~~lv~-~g~ls~G-----~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~---~~~~~~ 468 (708)
T TIGR01193 398 WTGAYLVM-RGKLTLG-----QLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKK---KRTELN 468 (708)
T ss_pred HHHHHHHH-cCCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc---cccCCC
Confidence 33333333 2322211 12222334445566777777777888889999999999998776543211 101112
Q ss_pred CCCccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHh
Q 001580 661 PSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 740 (1050)
Q Consensus 661 ~~~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r 740 (1050)
+..+.|+++||+|+|+++ +++|+|+||+|+|||++||+||||||||||+++|+|+|+|++|+|++||+|++++++.++|
T Consensus 469 ~~~~~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr 547 (708)
T TIGR01193 469 NLNGDIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLR 547 (708)
T ss_pred CCCCcEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHH
Confidence 334679999999999743 4799999999999999999999999999999999999999999999999999999999999
Q ss_pred hheEEEcCCcccccccHHHhcccC--CCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHc
Q 001580 741 KILGIIPQSPVLFSGTVRFNLDPF--SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 818 (1050)
Q Consensus 741 ~~i~~v~Q~~~lf~~tv~~nl~~~--~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall 818 (1050)
++||||||+|.+|++||+|||.++ ...++++++++++.++++++++++|.||||.+|++|.+|||||||||+||||++
T Consensus 548 ~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall 627 (708)
T TIGR01193 548 QFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALL 627 (708)
T ss_pred HheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999986 346889999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHH
Q 001580 819 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 898 (1050)
Q Consensus 819 ~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~ 898 (1050)
++|+|||||||||+||+++++.+++.|++. +++|+|+||||++.+..||+|++|++|++++.|+|+||+++. +.|..+
T Consensus 628 ~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~-~~y~~l 705 (708)
T TIGR01193 628 TDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRN-GFYASL 705 (708)
T ss_pred hCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhcC-CcHHHH
Confidence 999999999999999999999999999885 689999999999999999999999999999999999999864 567766
Q ss_pred HH
Q 001580 899 VQ 900 (1050)
Q Consensus 899 ~~ 900 (1050)
++
T Consensus 706 ~~ 707 (708)
T TIGR01193 706 IH 707 (708)
T ss_pred hh
Confidence 53
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-68 Score=649.11 Aligned_cols=542 Identities=25% Similarity=0.388 Sum_probs=407.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhccccccCCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 345 VLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLF----YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAM 420 (1050)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 420 (1050)
+...+++.++...+....|.++..+.|........... +..++.++.++..++.+...++....+.+...+++..+
T Consensus 25 ~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l 104 (592)
T PRK10790 25 LGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDV 104 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555666666677776666643221111111 11223334445666778888888889999999999999
Q ss_pred HHHHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 421 LHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLY 500 (1050)
Q Consensus 421 ~~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~~~~~~~~ 500 (1050)
++++++.|..+|++.+.|++++|+++|+..++..+...+..++..+..++..+++++++.+...++++..+++..+....
T Consensus 105 ~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~ 184 (592)
T PRK10790 105 MDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVI 184 (592)
T ss_pred HHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887776666666666666665555555554433322222222222233
Q ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHH-
Q 001580 501 YQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWL-AIRLEIVGGLM- 578 (1050)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~- 578 (1050)
+.+..+...+......+....++.|.++|+.+||+|+.++++.+.+.+..+...+..........+. .....++..++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (592)
T PRK10790 185 YQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALIL 264 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333445667788999999999999999998887777766554444332222211111 11111111111
Q ss_pred --HHHHHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCC
Q 001580 579 --IWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRP 656 (1050)
Q Consensus 579 --~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~ 656 (1050)
+++...+ + ..+..+ .+.+..++.+...+..++..+......++....+.+|+.++++.+++.... ..
T Consensus 265 ~~~~~~~~~-~-~~g~is-----~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~---~~- 333 (592)
T PRK10790 265 CGLLMLFGF-S-ASGTIE-----VGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGN---DD- 333 (592)
T ss_pred HHHHHHHHH-H-HCCCcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCC---Cc-
Confidence 1111111 1 122221 112223344555677778888888888899999999999998765432111 11
Q ss_pred CCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCCh
Q 001580 657 PPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL 736 (1050)
Q Consensus 657 ~~~~~~~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~ 736 (1050)
.++..+.|+++||+|+|+++ +++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.+||.|++++++
T Consensus 334 --~~~~~~~i~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~ 410 (592)
T PRK10790 334 --RPLQSGRIDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSH 410 (592)
T ss_pred --cCCCCCeEEEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCH
Confidence 11223569999999999753 479999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhheEEEcCCcccccccHHHhcccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001580 737 MDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 816 (1050)
Q Consensus 737 ~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAra 816 (1050)
+.+|++|+||||+|.+|++|+++||.++.+.++++++++++.++++++++++|.|+||.+|++|.+||||||||++||||
T Consensus 411 ~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARa 490 (592)
T PRK10790 411 SVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARV 490 (592)
T ss_pred HHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999887778999999999999999999999999999999999999999999999999
Q ss_pred HccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHH
Q 001580 817 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFS 896 (1050)
Q Consensus 817 ll~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~ 896 (1050)
|+++|+|||||||||+||+++++.+.+.|++..+++|+|+||||++.+..||+|++|++|++++.|+|+||+++. +.|.
T Consensus 491 Ll~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~-~~y~ 569 (592)
T PRK10790 491 LVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQ-GRYW 569 (592)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCC-CHHH
Confidence 999999999999999999999999999999987889999999999999999999999999999999999999874 6788
Q ss_pred HHHHh
Q 001580 897 KMVQS 901 (1050)
Q Consensus 897 ~~~~~ 901 (1050)
++++.
T Consensus 570 ~l~~~ 574 (592)
T PRK10790 570 QMYQL 574 (592)
T ss_pred HHHHH
Confidence 77754
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-70 Score=666.53 Aligned_cols=513 Identities=23% Similarity=0.349 Sum_probs=402.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHH
Q 001580 380 PLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFV 459 (1050)
Q Consensus 380 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~ 459 (1050)
...+.+.+..++++.++..++...++...+.+...++|...++.+||+++.||+.+..|++..++++|+..+++.+...+
T Consensus 70 ~~~~~l~~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKv 149 (1228)
T KOG0055|consen 70 VSKVALYFVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKV 149 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHH
Confidence 34456667778888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchH
Q 001580 460 NMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAY 539 (1050)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~ 539 (1050)
..++..+..++..+++.++..|...++++++.++.......+.+........+..+-++.-+...|++.+++|+.+|+.+
T Consensus 150 g~~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq 229 (1228)
T KOG0055|consen 150 GNFIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGE 229 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCc
Confidence 98888888888888877777765554444333332222222222111112222222233445778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHH
Q 001580 540 DRMADINGKSMDKNIRYTLVNMGAN----RWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITS 615 (1050)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~ 615 (1050)
++..+.+.+.+....++........ .+..+.+....++.+|+++.+... +..+....+....+.++ ...
T Consensus 230 ~~e~~ry~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~--~~~~~g~v~~v~~~vl~-----g~~ 302 (1228)
T KOG0055|consen 230 KKEIERYSKALENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILN--GGYNGGDVITVFFSVLI-----GGM 302 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCceEEEEEeehhh-----hhh
Confidence 9999999988888877765543221 112222333445555555444433 22222222211111111 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCC-CCceeeeeEEecCCc
Q 001580 616 LLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPEL-PPVLHGLSFTIPPSD 694 (1050)
Q Consensus 616 ~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~-~~~l~~vs~~i~~Ge 694 (1050)
.++..........++..+..++.+.++..+.......... ......|.|+|+||+|+|+.+. .++|+|+||+|++|+
T Consensus 303 sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~--~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~ 380 (1228)
T KOG0055|consen 303 SLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGR--VLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQ 380 (1228)
T ss_pred hhhccccchHHHhccccchHHHHHHhcCCCCCCcccccCC--cccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCC
Confidence 2222223333445566778888887764333211111111 1123467899999999997542 479999999999999
Q ss_pred EEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEEEcCCcccccccHHHhcccCCC-CCHHHHH
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLW 773 (1050)
Q Consensus 695 ~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~-~~~~~~~ 773 (1050)
.+||||||||||||++++|.|+|+|++|+|.+||.|+++++.+++|++||+|.|+|.||++||+|||.++.+ .+++++.
T Consensus 381 ~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~ 460 (1228)
T KOG0055|consen 381 TVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIE 460 (1228)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998874 5899999
Q ss_pred HHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcE
Q 001580 774 EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCT 853 (1050)
Q Consensus 774 ~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~t 853 (1050)
++++.+++++|+..+|+||+|.+||+|.+|||||||||||||||+++|+|||||||||+||+++++.++++|++..+|+|
T Consensus 461 ~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grT 540 (1228)
T KOG0055|consen 461 EAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRT 540 (1228)
T ss_pred HHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHhh
Q 001580 854 MLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 902 (1050)
Q Consensus 854 vi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~ 902 (1050)
.|+||||++++++||+|+||++|+|+|.|+|+||++.. |.|..+++.+
T Consensus 541 TivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~-G~Y~~lv~~Q 588 (1228)
T KOG0055|consen 541 TIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALG-GIYSSLVRLQ 588 (1228)
T ss_pred EEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhcc-chHHHHHHHH
Confidence 99999999999999999999999999999999999987 8999998764
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-71 Score=666.15 Aligned_cols=455 Identities=23% Similarity=0.377 Sum_probs=341.9
Q ss_pred CcEEEEeEEEEeCCC-CCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCC-----CCCCeeE----------
Q 001580 40 PAISIRNGYFSWDSK-AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----VSDASAV---------- 103 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~-~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~-----~~g~~~~---------- 103 (1050)
++|+++|++++|+.. ..+++|+|+||++++||+++|+||||||||||+++|+|+++| ++|.+..
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 369999999999632 135799999999999999999999999999999999999986 5665421
Q ss_pred -----E-eCcEEEEecCCC--CC-cccHHHHhccCC----CCCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCC
Q 001580 104 -----I-RGTVAYVPQVSW--IF-NATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV 166 (1050)
Q Consensus 104 -----~-~~~i~~v~Q~~~--l~-~~TV~eni~~g~----~~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~ 166 (1050)
. +..|||++|++. ++ ..|+.+|+.++. .... ++...+++..++.+... .......
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--------~~~~~~~ 155 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAK--------RLTDYPH 155 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH--------HHhhCCc
Confidence 0 135999999985 43 469999986421 1111 22333444444432110 1223446
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccC-CcEEEEeccCcchhhh-cCEEEEEcCCeE
Q 001580 167 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMV 244 (1050)
Q Consensus 167 ~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~-g~t~ilvtH~~~~l~~-~d~i~~l~~G~i 244 (1050)
+|||||||||+|||||+.+|++|||||||++||+.+++++++.+.+...+ |+|+|+||||++++.. ||||++|++|++
T Consensus 156 ~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i 235 (529)
T PRK15134 156 QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRC 235 (529)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEE
Confidence 89999999999999999999999999999999999999999988776544 8999999999999875 799999999999
Q ss_pred eeccChhhhhcChHHHHHHHHHhhhhhhhhhhcccCcccccCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhhc
Q 001580 245 KEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERET 324 (1050)
Q Consensus 245 ~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (1050)
++.|+++++..... . .
T Consensus 236 ~~~g~~~~~~~~~~----------------------------------~-------------------~----------- 251 (529)
T PRK15134 236 VEQNRAATLFSAPT----------------------------------H-------------------P----------- 251 (529)
T ss_pred EEeCCHHHHhhCCC----------------------------------C-------------------H-----------
Confidence 98777654321000 0 0
Q ss_pred ccccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 325 GVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYW 404 (1050)
Q Consensus 325 ~~~~~~~~~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~ 404 (1050)
+
T Consensus 252 ----------~--------------------------------------------------------------------- 252 (529)
T PRK15134 252 ----------Y--------------------------------------------------------------------- 252 (529)
T ss_pred ----------H---------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 405 LIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSL 484 (1050)
Q Consensus 405 ~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (1050)
.+ . +
T Consensus 253 ----------------------------------------------~~----~----~---------------------- 256 (529)
T PRK15134 253 ----------------------------------------------TQ----K----L---------------------- 256 (529)
T ss_pred ----------------------------------------------HH----H----H----------------------
Confidence 00 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001580 485 WAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGAN 564 (1050)
Q Consensus 485 ~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (1050)
+ . ..
T Consensus 257 ----------------~----~------~~-------------------------------------------------- 260 (529)
T PRK15134 257 ----------------L----N------SE-------------------------------------------------- 260 (529)
T ss_pred ----------------H----H------hC--------------------------------------------------
Confidence 0 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 001580 565 RWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELP 644 (1050)
Q Consensus 565 ~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~ 644 (1050)
.+ .. +
T Consensus 261 ----------------------------------------------------------------------~~----~~-~ 265 (529)
T PRK15134 261 ----------------------------------------------------------------------PS----GD-P 265 (529)
T ss_pred ----------------------------------------------------------------------cc----cc-c
Confidence 00 00 0
Q ss_pred CCCccccCCCCCCCCCCCCccEEEEEEEEEeCC---------CCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhc
Q 001580 645 SEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRP---------ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 715 (1050)
Q Consensus 645 ~e~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~---------~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g 715 (1050)
. .+ . . +....++++|++++|+. +..++|+|+||+|++||++||+||||||||||+++|+|
T Consensus 266 ~-~~----~---~---~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~G 334 (529)
T PRK15134 266 V-PL----P---E---PASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLR 334 (529)
T ss_pred c-cc----C---C---CCCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 0 00 0 0 01124899999999952 12369999999999999999999999999999999999
Q ss_pred cccCCccEEEECCeecCCCChHH---HhhheEEEcCCc--cccc-ccHHHhcccCC----C-CCHHHHHHHHHHhcHHHH
Q 001580 716 IVELERGRILIDGFDIAKFGLMD---LRKILGIIPQSP--VLFS-GTVRFNLDPFS----E-HSDADLWEALERAHLKDA 784 (1050)
Q Consensus 716 ~~~p~~G~i~~~g~~i~~~~~~~---~r~~i~~v~Q~~--~lf~-~tv~~nl~~~~----~-~~~~~~~~~l~~~~~~~~ 784 (1050)
++ |++|+|.++|.++...+... +|++++|+||++ .++. .|+++|+.+.. . ....+. ...+.++
T Consensus 335 l~-~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~~ 408 (529)
T PRK15134 335 LI-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQR-----EQQVIAV 408 (529)
T ss_pred cC-CCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHH-----HHHHHHH
Confidence 98 48999999999987765443 467899999998 3665 49999986421 0 111111 1123344
Q ss_pred HHHccCCcc-hhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCc
Q 001580 785 IRRNSLGLD-AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRL 861 (1050)
Q Consensus 785 i~~~p~gl~-t~v~~~~~~LSgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~ 861 (1050)
++.+ |+. ........+|||||||||+|||||+.+|++|||||||++||+.+.+.+++.|+++. .++|||+|||++
T Consensus 409 l~~~--~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~ 486 (529)
T PRK15134 409 MEEV--GLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDL 486 (529)
T ss_pred HHHc--CCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH
Confidence 4443 554 24556677899999999999999999999999999999999999999999999864 378999999999
Q ss_pred hhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 001580 862 NTIID-CDRILLLDSGRVLEYDTPEELLSNE 891 (1050)
Q Consensus 862 ~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~ 891 (1050)
+++.. ||+|++|++|++++.|+++++...+
T Consensus 487 ~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 517 (529)
T PRK15134 487 HVVRALCHQVIVLRQGEVVEQGDCERVFAAP 517 (529)
T ss_pred HHHHHhcCeEEEEECCEEEEEcCHHHHhcCC
Confidence 99876 9999999999999999999997643
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-71 Score=666.10 Aligned_cols=438 Identities=27% Similarity=0.435 Sum_probs=335.4
Q ss_pred EEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCC--CCCCCCeeEE---------------
Q 001580 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL--PPVSDASAVI--------------- 104 (1050)
Q Consensus 42 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~--~~~~g~~~~~--------------- 104 (1050)
|+++|++++|+ ++++|+|+||++++|++++|+|+||||||||+++|+|++ +|++|.+...
T Consensus 1 l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFD---GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEEC---CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 57899999995 357999999999999999999999999999999999996 6887754321
Q ss_pred ------------------------------eCcEEEEecC-CCCC-cccHHHHhccCCC---CCH----HHHHHHHHHhC
Q 001580 105 ------------------------------RGTVAYVPQV-SWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTS 145 (1050)
Q Consensus 105 ------------------------------~~~i~~v~Q~-~~l~-~~TV~eni~~g~~---~~~----~~~~~~~~~~~ 145 (1050)
+..++|++|+ +.++ ..||+||+.++.. ... +++...++..+
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 2248999997 5565 5799999987421 221 22333455555
Q ss_pred cHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEec
Q 001580 146 LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVT 224 (1050)
Q Consensus 146 l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvt 224 (1050)
+.+..+ ....+|||||||||+|||||+.+|++|||||||++||+.+++++.+.+.+... .|+|+|+||
T Consensus 158 l~~~~~-----------~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivt 226 (520)
T TIGR03269 158 LSHRIT-----------HIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226 (520)
T ss_pred Chhhhh-----------cCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 543332 23468999999999999999999999999999999999999999998877644 489999999
Q ss_pred cCcchhhh-cCEEEEEcCCeEeeccChhhhhcChHHHHHHHHHhhhhhhhhhhcccCcccccCCCCCCCCCCCCCCCCcc
Q 001580 225 NQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEA 303 (1050)
Q Consensus 225 H~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (1050)
||++++.. ||+|++|++|+++..|+++++...
T Consensus 227 Hd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~----------------------------------------------- 259 (520)
T TIGR03269 227 HWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV----------------------------------------------- 259 (520)
T ss_pred CCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHH-----------------------------------------------
Confidence 99999875 799999999998765544321100
Q ss_pred ccccccccccchhhhhhhhhcccccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCCCChhHH
Q 001580 304 SDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFY 383 (1050)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 383 (1050)
T Consensus 260 -------------------------------------------------------------------------------- 259 (520)
T TIGR03269 260 -------------------------------------------------------------------------------- 259 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHH
Q 001580 384 NTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFM 463 (1050)
Q Consensus 384 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~ 463 (1050)
..
T Consensus 260 ------------------------------------------------------------~~------------------ 261 (520)
T TIGR03269 260 ------------------------------------------------------------FM------------------ 261 (520)
T ss_pred ------------------------------------------------------------HH------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHH
Q 001580 464 GQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMA 543 (1050)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~ 543 (1050)
. . +
T Consensus 262 ------------------------------------------~---------------~----~---------------- 264 (520)
T TIGR03269 262 ------------------------------------------E---------------G----V---------------- 264 (520)
T ss_pred ------------------------------------------h---------------h----c----------------
Confidence 0 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 544 DINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRL 623 (1050)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~ 623 (1050)
T Consensus 265 -------------------------------------------------------------------------------- 264 (520)
T TIGR03269 265 -------------------------------------------------------------------------------- 264 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCC---CCCCceeeeeEEecCCcEEEEEC
Q 001580 624 ASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRP---ELPPVLHGLSFTIPPSDKVGIVG 700 (1050)
Q Consensus 624 ~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~---~~~~~l~~vs~~i~~Ge~~~ivG 700 (1050)
.+... +...+ .....++++|++++|++ +..++|+|+||+|++||++||+|
T Consensus 265 -----------~~~~~----~~~~~------------~~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G 317 (520)
T TIGR03269 265 -----------SEVEK----ECEVE------------VGEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVG 317 (520)
T ss_pred -----------hhhcc----ccccC------------CCCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEEC
Confidence 00000 00000 00124999999999952 22369999999999999999999
Q ss_pred CCCCCHHHHHHHHhccccCCccEEEEC-Cee---cCCCCh---HHHhhheEEEcCCcccccc-cHHHhcccCC--CCCHH
Q 001580 701 RTGAGKSSMLNTLFRIVELERGRILID-GFD---IAKFGL---MDLRKILGIIPQSPVLFSG-TVRFNLDPFS--EHSDA 770 (1050)
Q Consensus 701 ~~GsGKSTll~~l~g~~~p~~G~i~~~-g~~---i~~~~~---~~~r~~i~~v~Q~~~lf~~-tv~~nl~~~~--~~~~~ 770 (1050)
|||||||||+++|+|+++|++|+|.++ |.+ +...++ ..+|++|+|+||++.+|.. |+.+|+.+.. .....
T Consensus 318 ~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~ 397 (520)
T TIGR03269 318 TSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDE 397 (520)
T ss_pred CCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHH
Confidence 999999999999999999999999996 643 333322 2456789999999988865 9999996321 11111
Q ss_pred HHHHHHHHhcHHHHHHHccCCcch-----hhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHH
Q 001580 771 DLWEALERAHLKDAIRRNSLGLDA-----QVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 845 (1050)
Q Consensus 771 ~~~~~l~~~~~~~~i~~~p~gl~t-----~v~~~~~~LSgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l 845 (1050)
+. ...+.++++.+ |+.. .......+|||||||||+|||||+.+|+||||||||++||+.+.+.+.+.|
T Consensus 398 ~~-----~~~~~~~l~~~--~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l 470 (520)
T TIGR03269 398 LA-----RMKAVITLKMV--GFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSI 470 (520)
T ss_pred HH-----HHHHHHHHHhC--CCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 10 11223344443 3422 345666789999999999999999999999999999999999999999999
Q ss_pred HHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001580 846 REEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889 (1050)
Q Consensus 846 ~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 889 (1050)
+++. .+.|||+|||+++++.. ||++++|++|++++.|+++++.+
T Consensus 471 ~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 471 LKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred HHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 8864 37899999999999977 99999999999999999988754
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-71 Score=664.65 Aligned_cols=446 Identities=22% Similarity=0.330 Sum_probs=336.7
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeEE-------------eC
Q 001580 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------------RG 106 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~-------------~~ 106 (1050)
+.|+++|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+... +.
T Consensus 4 ~~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 80 (510)
T PRK09700 4 PYISMAGIGKSFG---PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80 (510)
T ss_pred ceEEEeeeEEEcC---CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHC
Confidence 4699999999996 3579999999999999999999999999999999999999998865421 13
Q ss_pred cEEEEecCCCCC-cccHHHHhccCCC-----C-----CHH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHH
Q 001580 107 TVAYVPQVSWIF-NATVRDNILFGSA-----F-----EPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 171 (1050)
Q Consensus 107 ~i~~v~Q~~~l~-~~TV~eni~~g~~-----~-----~~~----~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGG 171 (1050)
.|+||+|++.++ ..||+||+.++.. . +.. +....++..++.+ .......+||||
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgG 149 (510)
T PRK09700 81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKV-----------DLDEKVANLSIS 149 (510)
T ss_pred CeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCC-----------CcccchhhCCHH
Confidence 599999998876 6799999987531 0 111 1122222222221 123445689999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccCh
Q 001580 172 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTF 250 (1050)
Q Consensus 172 qrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 250 (1050)
|||||+|||||+.+|++|||||||++||+.++.++++.+.+...+|+|+|+||||++++.. ||++++|++|++++.|++
T Consensus 150 ~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~ 229 (510)
T PRK09700 150 HKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMV 229 (510)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecch
Confidence 9999999999999999999999999999999999999887766568999999999999875 799999999999877765
Q ss_pred hhhhcChHHHHHHHHHhhhhhhhhhhcccCcccccCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhhcccccHH
Q 001580 251 EDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFK 330 (1050)
Q Consensus 251 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (1050)
+++.... ....
T Consensus 230 ~~~~~~~-----~~~~---------------------------------------------------------------- 240 (510)
T PRK09700 230 SDVSNDD-----IVRL---------------------------------------------------------------- 240 (510)
T ss_pred hhCCHHH-----HHHH----------------------------------------------------------------
Confidence 4432100 0000
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 331 VLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSL 410 (1050)
Q Consensus 331 ~~~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 410 (1050)
T Consensus 241 -------------------------------------------------------------------------------- 240 (510)
T PRK09700 241 -------------------------------------------------------------------------------- 240 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 411 YAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPL 490 (1050)
Q Consensus 411 ~~~~~l~~~l~~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 490 (1050)
+
T Consensus 241 ---------------------------------~---------------------------------------------- 241 (510)
T PRK09700 241 ---------------------------------M---------------------------------------------- 241 (510)
T ss_pred ---------------------------------h----------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001580 491 LLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIR 570 (1050)
Q Consensus 491 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (1050)
+ .+
T Consensus 242 ----------~-------------~~------------------------------------------------------ 244 (510)
T PRK09700 242 ----------V-------------GR------------------------------------------------------ 244 (510)
T ss_pred ----------c-------------CC------------------------------------------------------
Confidence 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccc
Q 001580 571 LEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLV 650 (1050)
Q Consensus 571 ~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~ 650 (1050)
.. ..+ ....... +
T Consensus 245 ---------------------~~----------------------------------------~~~---~~~~~~~-~-- 257 (510)
T PRK09700 245 ---------------------EL----------------------------------------QNR---FNAMKEN-V-- 257 (510)
T ss_pred ---------------------Cc----------------------------------------ccc---ccccccc-c--
Confidence 00 000 0000000 0
Q ss_pred cCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCee
Q 001580 651 IESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFD 730 (1050)
Q Consensus 651 ~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~ 730 (1050)
. .. .....++++|+++.|. .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 258 ---~-~~---~~~~~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~ 326 (510)
T PRK09700 258 ---S-NL---AHETVFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKD 326 (510)
T ss_pred ---c-cC---CCCcEEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEE
Confidence 0 00 0112499999999762 38999999999999999999999999999999999999999999999999
Q ss_pred cCCCCh-HHHhhheEEEcCCc---ccccc-cHHHhcccCCCCC----HH--HH-HHHHHHhcHHHHHHHccCCcc-hhhh
Q 001580 731 IAKFGL-MDLRKILGIIPQSP---VLFSG-TVRFNLDPFSEHS----DA--DL-WEALERAHLKDAIRRNSLGLD-AQVS 797 (1050)
Q Consensus 731 i~~~~~-~~~r~~i~~v~Q~~---~lf~~-tv~~nl~~~~~~~----~~--~~-~~~l~~~~~~~~i~~~p~gl~-t~v~ 797 (1050)
+...++ ..+|+.++|+||++ .+|.. |+++|+.+..... .. .. ........+.++++.+ |+. ....
T Consensus 327 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~ 404 (510)
T PRK09700 327 ISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELL--ALKCHSVN 404 (510)
T ss_pred CCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhc--CCCCCCcc
Confidence 866544 34567899999984 46654 9999987531100 00 00 0000112234455553 453 3456
Q ss_pred cCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeC
Q 001580 798 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDS 875 (1050)
Q Consensus 798 ~~~~~LSgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~ 875 (1050)
....+|||||||||+|||||+.+|+||||||||++||+.+.+.+.+.|+++. ++.|||+|||+++.+.. ||++++|++
T Consensus 405 ~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~ 484 (510)
T PRK09700 405 QNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCE 484 (510)
T ss_pred CccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEEC
Confidence 6667899999999999999999999999999999999999999999998864 47899999999999877 999999999
Q ss_pred CEEEEecCh
Q 001580 876 GRVLEYDTP 884 (1050)
Q Consensus 876 G~i~~~g~~ 884 (1050)
|++++.++.
T Consensus 485 G~i~~~~~~ 493 (510)
T PRK09700 485 GRLTQILTN 493 (510)
T ss_pred CEEEEEecC
Confidence 999988765
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-67 Score=647.09 Aligned_cols=501 Identities=24% Similarity=0.357 Sum_probs=398.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001580 388 SLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVS 467 (1050)
Q Consensus 388 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~ 467 (1050)
+++.++..++.++..++....+.+....++..+++++++.|..+|++.+.|++++|+++|+..+...+...+..++..++
T Consensus 72 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~ 151 (582)
T PRK11176 72 IGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGA 151 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677777888888888889999999999999999999999999999999999999999998877666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHH
Q 001580 468 QLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADING 547 (1050)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~ 547 (1050)
.++.++++++++.+...++++.++++.+++.....+..++..+........+.+.+.|.++|+++||+|+.++.+.+.+.
T Consensus 152 ~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~ 231 (582)
T PRK11176 152 SIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFD 231 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHH
Confidence 66666666666655544444433333334444444444444455555567788899999999999999999988887777
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 548 KSMDKNIRYTLVNMGANRWLAIRLEIVGGL---MIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLA 624 (1050)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~ 624 (1050)
+..+...+..........+......++..+ ++++++.+.+.. +..+ .+.+..++++...+..++..+....
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~-g~is-----~g~~~~~~~~~~~~~~pl~~l~~~~ 305 (582)
T PRK11176 232 KVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVM-DTLT-----AGTITVVFSSMIALMRPLKSLTNVN 305 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCC-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766665555444333333333333332222 222222222322 2222 1222233444555667777777888
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCC
Q 001580 625 SLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGA 704 (1050)
Q Consensus 625 ~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~Gs 704 (1050)
...+....+.+|+.++++.+++.+.. ... ..+..+.|+++||+|+|+++.+++|+|+||+|+|||++||+|+|||
T Consensus 306 ~~~~~~~~~~~ri~~~~~~~~~~~~~---~~~--~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGs 380 (582)
T PRK11176 306 AQFQRGMAACQTLFAILDLEQEKDEG---KRV--IERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGS 380 (582)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCCCC---CcC--CCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCC
Confidence 88888999999999998766542211 011 1123346999999999976545799999999999999999999999
Q ss_pred CHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEEEcCCcccccccHHHhcccCC--CCCHHHHHHHHHHhcHH
Q 001580 705 GKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS--EHSDADLWEALERAHLK 782 (1050)
Q Consensus 705 GKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~--~~~~~~~~~~l~~~~~~ 782 (1050)
|||||+++|+|+++|++|+|++||.|+++++..++|++|+||||++.+|++||++||.++. ..++++++++++.++++
T Consensus 381 GKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~ 460 (582)
T PRK11176 381 GKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAM 460 (582)
T ss_pred CHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcH
Confidence 9999999999999999999999999999999999999999999999999999999998753 36899999999999999
Q ss_pred HHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCch
Q 001580 783 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN 862 (1050)
Q Consensus 783 ~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~ 862 (1050)
++++++|.|+||.+|++|.+||||||||++|||||+++|+|||||||||+||+++++.+.+.|.+..+++|+|+||||++
T Consensus 461 ~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~ 540 (582)
T PRK11176 461 DFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLS 540 (582)
T ss_pred HHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999878899999999999
Q ss_pred hhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHH
Q 001580 863 TIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 900 (1050)
Q Consensus 863 ~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~ 900 (1050)
.+..||+|++|++|++++.|+|++++++. +.|+.++.
T Consensus 541 ~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~-~~y~~l~~ 577 (582)
T PRK11176 541 TIEKADEILVVEDGEIVERGTHAELLAQN-GVYAQLHK 577 (582)
T ss_pred HHHhCCEEEEEECCEEEEeCCHHHHHhCC-ChHHHHHH
Confidence 99999999999999999999999999874 57777765
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-67 Score=656.39 Aligned_cols=533 Identities=24% Similarity=0.348 Sum_probs=402.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhccccccCCCChhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 346 LILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLF--YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHS 423 (1050)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 423 (1050)
...+++.++...+....|.++...+|........... +..+++++.+...++.+++.++....+.+...+++..+++|
T Consensus 150 ~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 229 (694)
T TIGR03375 150 RDVLIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFER 229 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555556666677777666654322221111 22233334555778888999999999999999999999999
Q ss_pred HHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 424 ILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQS 503 (1050)
Q Consensus 424 ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~~~~~~~~~~~ 503 (1050)
++++|+.| .++++|++++|+ +|++.+...+.......+..+..++..+++++++++...++.+..+++++++..++.+
T Consensus 230 ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~ 307 (694)
T TIGR03375 230 VLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQR 307 (694)
T ss_pred HhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998 788999999999 7999998876655444444444444444444455544433333333333333334444
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHH
Q 001580 504 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMG----ANRWLAIRLEIVGGLMI 579 (1050)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~ 579 (1050)
..++..+......+...+.+.|.++|+++||+|+.++.+.+.+.+......+....... ...+..+...+...+++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 387 (694)
T TIGR03375 308 PLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIV 387 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555667788899999999999999999988777776665554433333222 22222222222222222
Q ss_pred HHHHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCC
Q 001580 580 WLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPG 659 (1050)
Q Consensus 580 ~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~ 659 (1050)
++ +.+.+. .+..+. +.+..++.+...+..++..+......+.....+.+|+.++++.+++.+... .....
T Consensus 388 ~~-g~~~v~-~g~ls~-----G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~---~~~~~ 457 (694)
T TIGR03375 388 VV-GVYLIS-DGELTM-----GGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGT---RFLHR 457 (694)
T ss_pred HH-HHHHHH-cCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC---CCCCC
Confidence 22 333333 233221 112223334445566777777777888889999999999998776532111 10111
Q ss_pred CCCCccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHH
Q 001580 660 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL 739 (1050)
Q Consensus 660 ~~~~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~ 739 (1050)
.+..+.|+++||+|+|++..+++|+|+||+|+|||++||+|+||||||||+++|+|+|+|++|+|.+||+|++++++.++
T Consensus 458 ~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~l 537 (694)
T TIGR03375 458 PRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADL 537 (694)
T ss_pred CCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHH
Confidence 12345799999999997544579999999999999999999999999999999999999999999999999999999999
Q ss_pred hhheEEEcCCcccccccHHHhcccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHc
Q 001580 740 RKILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 818 (1050)
Q Consensus 740 r~~i~~v~Q~~~lf~~tv~~nl~~~~~-~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall 818 (1050)
|++|+||||++.+|++||+|||.++.+ .++++++++++.++++++++.+|.|++|.+|++|.+||||||||++||||++
T Consensus 538 r~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall 617 (694)
T TIGR03375 538 RRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALL 617 (694)
T ss_pred HhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999998765 6899999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001580 819 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 890 (1050)
Q Consensus 819 ~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 890 (1050)
++|+|||||||||+||+++++.+++.|.+..+++|+|+||||++++..||+|++|++|++++.|+|+||+++
T Consensus 618 ~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 618 RDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 999999999999999999999999999998889999999999999999999999999999999999999864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-70 Score=654.01 Aligned_cols=450 Identities=24% Similarity=0.406 Sum_probs=341.8
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeEE-------------eC
Q 001580 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------------RG 106 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~-------------~~ 106 (1050)
+.|+++|++|+|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+... +.
T Consensus 10 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 86 (510)
T PRK15439 10 PLLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQL 86 (510)
T ss_pred ceEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 46999999999963 569999999999999999999999999999999999999998865431 12
Q ss_pred cEEEEecCCCCC-cccHHHHhccCCCCCH---HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHH
Q 001580 107 TVAYVPQVSWIF-NATVRDNILFGSAFEP---ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 182 (1050)
Q Consensus 107 ~i~~v~Q~~~l~-~~TV~eni~~g~~~~~---~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL 182 (1050)
.+||++|++.++ ..||+||+.++..... ++....++..++... ......+|||||||||+|||||
T Consensus 87 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~aL 155 (510)
T PRK15439 87 GIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLD-----------LDSSAGSLEVADRQIVEILRGL 155 (510)
T ss_pred CEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcc-----------ccCChhhCCHHHHHHHHHHHHH
Confidence 499999999876 6799999998743221 223333444443321 2334568999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhhhcChHHHH
Q 001580 183 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNGELFQ 261 (1050)
Q Consensus 183 ~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 261 (1050)
+.+|++|||||||++||+.+++++++.+.+...+|+|+|++|||++++.. ||+|++|++|++++.|+++++.... ..+
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~-~~~ 234 (510)
T PRK15439 156 MRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDD-IIQ 234 (510)
T ss_pred HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHHH-HHH
Confidence 99999999999999999999999999887765568999999999999865 7999999999999888776543110 000
Q ss_pred HHHHHhhhhhhhhhhcccCcccccCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhhcccccHHHHHHHHHHhhh
Q 001580 262 KLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGG 341 (1050)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~ 341 (1050)
.+. ... .
T Consensus 235 ~~~---------------~~~--------~-------------------------------------------------- 241 (510)
T PRK15439 235 AIT---------------PAA--------R-------------------------------------------------- 241 (510)
T ss_pred HHh---------------Ccc--------c--------------------------------------------------
Confidence 000 000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 342 LWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAML 421 (1050)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 421 (1050)
T Consensus 242 -------------------------------------------------------------------------------- 241 (510)
T PRK15439 242 -------------------------------------------------------------------------------- 241 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 422 HSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYY 501 (1050)
Q Consensus 422 ~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~~~~~~~~~ 501 (1050)
T Consensus 242 -------------------------------------------------------------------------------- 241 (510)
T PRK15439 242 -------------------------------------------------------------------------------- 241 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001580 502 QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWL 581 (1050)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 581 (1050)
.. .. .
T Consensus 242 ---~~---~~---~------------------------------------------------------------------ 246 (510)
T PRK15439 242 ---EK---SL---S------------------------------------------------------------------ 246 (510)
T ss_pred ---cc---cc---c------------------------------------------------------------------
Confidence 00 00 0
Q ss_pred HHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCC
Q 001580 582 TATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP 661 (1050)
Q Consensus 582 ~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~ 661 (1050)
..++.. ...+...+ . .. +
T Consensus 247 ---------------------------------------------------~~~~~~--~~~~~~~~-----~-~~---~ 264 (510)
T PRK15439 247 ---------------------------------------------------ASQKLW--LELPGNRR-----Q-QA---A 264 (510)
T ss_pred ---------------------------------------------------cccccc--cccccccc-----c-cC---C
Confidence 000000 00000000 0 00 0
Q ss_pred CCccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHH-Hh
Q 001580 662 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LR 740 (1050)
Q Consensus 662 ~~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~-~r 740 (1050)
....++++|+++ .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...++.. .|
T Consensus 265 ~~~~l~~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 337 (510)
T PRK15439 265 GAPVLTVEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLA 337 (510)
T ss_pred CCceEEEeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHh
Confidence 112489999983 2699999999999999999999999999999999999999999999999998766654 45
Q ss_pred hheEEEcCCc---ccccc-cHHHhcccC--C--CC--CHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHH
Q 001580 741 KILGIIPQSP---VLFSG-TVRFNLDPF--S--EH--SDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQ 809 (1050)
Q Consensus 741 ~~i~~v~Q~~---~lf~~-tv~~nl~~~--~--~~--~~~~~~~~l~~~~~~~~i~~~p~gl~-t~v~~~~~~LSgGq~q 809 (1050)
+.|+|+||++ .+|.. |+.+|+... . .. .... ....+.++++.+ |+. .........|||||||
T Consensus 338 ~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kq 410 (510)
T PRK15439 338 RGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAR-----ENAVLERYRRAL--NIKFNHAEQAARTLSGGNQQ 410 (510)
T ss_pred CCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHH-----HHHHHHHHHHHc--CCCCCCccCccccCCcHHHH
Confidence 6799999986 36654 999998421 0 00 1111 112234555554 554 3456667889999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 001580 810 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 887 (1050)
Q Consensus 810 rl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 887 (1050)
||+|||||+.+|+||||||||+|||+.+.+.+.+.|+++. +++|||+|||+++++.. ||++++|++|+++..|+++++
T Consensus 411 rl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 411 KVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred HHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence 9999999999999999999999999999999999999864 47899999999999987 999999999999999988876
Q ss_pred h
Q 001580 888 L 888 (1050)
Q Consensus 888 ~ 888 (1050)
.
T Consensus 491 ~ 491 (510)
T PRK15439 491 N 491 (510)
T ss_pred C
Confidence 4
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-70 Score=657.22 Aligned_cols=442 Identities=21% Similarity=0.339 Sum_probs=336.1
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeEE-------------eC
Q 001580 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------------RG 106 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~-------------~~ 106 (1050)
+.|+++|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+... +.
T Consensus 3 ~~i~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~ 79 (501)
T PRK10762 3 ALLQLKGIDKAFP---GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEA 79 (501)
T ss_pred ceEEEeeeEEEeC---CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhC
Confidence 3689999999996 2579999999999999999999999999999999999999998865431 23
Q ss_pred cEEEEecCCCCC-cccHHHHhccCCCC-------CHH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHH
Q 001580 107 TVAYVPQVSWIF-NATVRDNILFGSAF-------EPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 174 (1050)
Q Consensus 107 ~i~~v~Q~~~l~-~~TV~eni~~g~~~-------~~~----~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrq 174 (1050)
.++|++|++.++ ..||+||+.++... +.. +....++..++.+ .......+|||||||
T Consensus 80 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~q 148 (501)
T PRK10762 80 GIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRF-----------SSDKLVGELSIGEQQ 148 (501)
T ss_pred CEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCC-----------CccCchhhCCHHHHH
Confidence 599999998776 67999999886321 111 1122222222221 123345689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhh
Q 001580 175 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 253 (1050)
Q Consensus 175 Rv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 253 (1050)
||+|||||+.+|++|||||||++||+.++.++++.+.+....|.|+|++|||++++.. ||+|++|++|++++.|+.+++
T Consensus 149 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 149 MVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred HHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 9999999999999999999999999999999999887765568999999999999875 799999999998876654332
Q ss_pred hcChHHHHHHHHHhhhhhhhhhhcccCcccccCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhhcccccHHHHH
Q 001580 254 SNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLS 333 (1050)
Q Consensus 254 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (1050)
.... ...
T Consensus 229 ~~~~-----~~~-------------------------------------------------------------------- 235 (501)
T PRK10762 229 TEDS-----LIE-------------------------------------------------------------------- 235 (501)
T ss_pred CHHH-----HHH--------------------------------------------------------------------
Confidence 1000 000
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 334 RYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAA 413 (1050)
Q Consensus 334 ~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 413 (1050)
T Consensus 236 -------------------------------------------------------------------------------- 235 (501)
T PRK10762 236 -------------------------------------------------------------------------------- 235 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 414 KRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLL 493 (1050)
Q Consensus 414 ~~l~~~l~~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~ 493 (1050)
.+
T Consensus 236 -----------------------------~~------------------------------------------------- 237 (501)
T PRK10762 236 -----------------------------MM------------------------------------------------- 237 (501)
T ss_pred -----------------------------Hh-------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001580 494 FYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEI 573 (1050)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (1050)
.
T Consensus 238 -------~------------------------------------------------------------------------ 238 (501)
T PRK10762 238 -------V------------------------------------------------------------------------ 238 (501)
T ss_pred -------c------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCC
Q 001580 574 VGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIES 653 (1050)
Q Consensus 574 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~ 653 (1050)
.. +.. ..++..+
T Consensus 239 ----------------~~--------------------------------------------~~~---~~~~~~~----- 250 (501)
T PRK10762 239 ----------------GR--------------------------------------------KLE---DQYPRLD----- 250 (501)
T ss_pred ----------------CC--------------------------------------------Ccc---ccccccc-----
Confidence 00 000 0000000
Q ss_pred CCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCC
Q 001580 654 NRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK 733 (1050)
Q Consensus 654 ~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~ 733 (1050)
.. +....++++|+++ ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 251 --~~---~~~~~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~ 318 (501)
T PRK10762 251 --KA---PGEVRLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVT 318 (501)
T ss_pred --cC---CCCcEEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCC
Confidence 00 0112488999984 37999999999999999999999999999999999999999999999999876
Q ss_pred CChH-HHhhheEEEcCCc---cccc-ccHHHhcccCCC--CCH--HHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCC
Q 001580 734 FGLM-DLRKILGIIPQSP---VLFS-GTVRFNLDPFSE--HSD--ADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENF 803 (1050)
Q Consensus 734 ~~~~-~~r~~i~~v~Q~~---~lf~-~tv~~nl~~~~~--~~~--~~~~~~l~~~~~~~~i~~~p~gl~-t~v~~~~~~L 803 (1050)
.++. .+|+++||+||++ .++. .|+++|+.+... ... ...........+.++++.+ |+. .........|
T Consensus 319 ~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~L 396 (501)
T PRK10762 319 RSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLF--NIKTPSMEQAIGLL 396 (501)
T ss_pred CCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhc--CCCCCCccCchhhC
Confidence 6653 3567899999997 3554 599999964210 000 0000000112234555553 452 3456667789
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEe
Q 001580 804 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEY 881 (1050)
Q Consensus 804 SgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~ 881 (1050)
||||||||+|||||+.+|+||||||||++||+.+.+.+.+.|+++. +|+|||++||+++++.. ||+|++|++|+++..
T Consensus 397 SgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 476 (501)
T PRK10762 397 SGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGE 476 (501)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999865 47899999999999877 999999999999999
Q ss_pred cChhHH
Q 001580 882 DTPEEL 887 (1050)
Q Consensus 882 g~~~el 887 (1050)
|+++++
T Consensus 477 ~~~~~~ 482 (501)
T PRK10762 477 FTREQA 482 (501)
T ss_pred eccccC
Confidence 988765
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-69 Score=650.82 Aligned_cols=201 Identities=17% Similarity=0.334 Sum_probs=169.5
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheE
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 744 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 744 (1050)
.++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|. +++|
T Consensus 319 ~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i~ 385 (530)
T PRK15064 319 ALEVENLTKGFDNG--PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANIG 385 (530)
T ss_pred eEEEEeeEEeeCCc--eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEEE
Confidence 59999999999643 6999999999999999999999999999999999999999999999872 4799
Q ss_pred EEcCCcc--ccc-ccHHHhcccCC--CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHcc
Q 001580 745 IIPQSPV--LFS-GTVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 819 (1050)
Q Consensus 745 ~v~Q~~~--lf~-~tv~~nl~~~~--~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~ 819 (1050)
|+||++. ++. .|+++|+..+. ...++++.+.++..++. .........+||||||||++||||++.
T Consensus 386 ~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LSgGq~qrv~la~al~~ 455 (530)
T PRK15064 386 YYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFS----------QDDIKKSVKVLSGGEKGRMLFGKLMMQ 455 (530)
T ss_pred EEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCC----------hhHhcCcccccCHHHHHHHHHHHHHhc
Confidence 9999974 443 49999986432 11233344444444331 123445567899999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEE-EecChhHHhhc
Q 001580 820 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVL-EYDTPEELLSN 890 (1050)
Q Consensus 820 ~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~-~~g~~~el~~~ 890 (1050)
+|+||||||||++||+.+...+++.|++. ++|||+|||+++++.. ||++++|++|+++ ..|++++++..
T Consensus 456 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 456 KPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 99999999999999999999999999885 5699999999999987 9999999999998 77999988754
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-70 Score=652.02 Aligned_cols=445 Identities=21% Similarity=0.304 Sum_probs=333.8
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE-------------EeC
Q 001580 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRG 106 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~ 106 (1050)
+.|+++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. ++.
T Consensus 3 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 79 (501)
T PRK11288 3 PYLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA 79 (501)
T ss_pred ceEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhC
Confidence 46999999999963 46999999999999999999999999999999999999999887542 124
Q ss_pred cEEEEecCCCCC-cccHHHHhccCCC------CCHH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHH
Q 001580 107 TVAYVPQVSWIF-NATVRDNILFGSA------FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 175 (1050)
Q Consensus 107 ~i~~v~Q~~~l~-~~TV~eni~~g~~------~~~~----~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqR 175 (1050)
.|||++|++.++ ..||+||+.++.. .+.. +....++..++.. .......+||||||||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qr 148 (501)
T PRK11288 80 GVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI-----------DPDTPLKYLSIGQRQM 148 (501)
T ss_pred CEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCC-----------CcCCchhhCCHHHHHH
Confidence 599999999876 5799999988631 1111 1222223322211 1233457899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhhh
Q 001580 176 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLS 254 (1050)
Q Consensus 176 v~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 254 (1050)
|+|||||+.+|++|||||||++||+.+++++++.+.+...+|+|+|+||||++++.. ||+|++|++|+++..++..+..
T Consensus 149 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 228 (501)
T PRK11288 149 VEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQV 228 (501)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCccccC
Confidence 999999999999999999999999999999999887765568999999999999865 7999999999987533210000
Q ss_pred cChHHHHHHHHHhhhhhhhhhhcccCcccccCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhhcccccHHHHHH
Q 001580 255 NNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSR 334 (1050)
Q Consensus 255 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (1050)
.. +
T Consensus 229 ~~---------------------------------------------------------------~-------------- 231 (501)
T PRK11288 229 DR---------------------------------------------------------------D-------------- 231 (501)
T ss_pred CH---------------------------------------------------------------H--------------
Confidence 00 0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 335 YKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAK 414 (1050)
Q Consensus 335 y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 414 (1050)
T Consensus 232 -------------------------------------------------------------------------------- 231 (501)
T PRK11288 232 -------------------------------------------------------------------------------- 231 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 415 RLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLF 494 (1050)
Q Consensus 415 ~l~~~l~~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~~ 494 (1050)
.+ .
T Consensus 232 -----------------------------------~~-------~----------------------------------- 234 (501)
T PRK11288 232 -----------------------------------QL-------V----------------------------------- 234 (501)
T ss_pred -----------------------------------HH-------H-----------------------------------
Confidence 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001580 495 YAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIV 574 (1050)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (1050)
. .. .
T Consensus 235 -----------~---~~---~----------------------------------------------------------- 238 (501)
T PRK11288 235 -----------Q---AM---V----------------------------------------------------------- 238 (501)
T ss_pred -----------H---Hh---c-----------------------------------------------------------
Confidence 0 00 0
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCC
Q 001580 575 GGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESN 654 (1050)
Q Consensus 575 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~ 654 (1050)
... ..+ ..... + .
T Consensus 239 ---------------~~~-----------------------------------------~~~---~~~~~---~-----~ 251 (501)
T PRK11288 239 ---------------GRE-----------------------------------------IGD---IYGYR---P-----R 251 (501)
T ss_pred ---------------CCC-----------------------------------------ccc---ccccc---c-----c
Confidence 000 000 00000 0 0
Q ss_pred CCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCC
Q 001580 655 RPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF 734 (1050)
Q Consensus 655 ~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~ 734 (1050)
. +....++++|+++. .+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 252 --~---~~~~~l~~~~~~~~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~ 320 (501)
T PRK11288 252 --P---LGEVRLRLDGLKGP------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIR 320 (501)
T ss_pred --C---CCCcEEEEeccccC------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCC
Confidence 0 01123889999742 489999999999999999999999999999999999999999999999998654
Q ss_pred ChH-HHhhheEEEcCCcc---ccc-ccHHHhcccCCCCC--H-H-HHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCC
Q 001580 735 GLM-DLRKILGIIPQSPV---LFS-GTVRFNLDPFSEHS--D-A-DLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFS 804 (1050)
Q Consensus 735 ~~~-~~r~~i~~v~Q~~~---lf~-~tv~~nl~~~~~~~--~-~-~~~~~l~~~~~~~~i~~~p~gl~-t~v~~~~~~LS 804 (1050)
++. ..|+.++|+||++. +|. .|+.+|+.+..... . . ..........+.++++.+ |+. ........+||
T Consensus 321 ~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LS 398 (501)
T PRK11288 321 SPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSL--NIKTPSREQLIMNLS 398 (501)
T ss_pred CHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhc--CcccCCccCccccCC
Confidence 433 45678999999973 554 69999986531100 0 0 000000111234455553 442 33455667899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001580 805 VGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 882 (1050)
Q Consensus 805 gGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 882 (1050)
|||||||+|||||+.+|+||||||||+|||+.+.+.+++.|+++. .+.|||+||||++++.. ||++++|++|++++.|
T Consensus 399 gGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~ 478 (501)
T PRK11288 399 GGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGEL 478 (501)
T ss_pred HHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEE
Confidence 999999999999999999999999999999999999999998865 47899999999999977 9999999999999999
Q ss_pred ChhHHh
Q 001580 883 TPEELL 888 (1050)
Q Consensus 883 ~~~el~ 888 (1050)
+++++.
T Consensus 479 ~~~~~~ 484 (501)
T PRK11288 479 AREQAT 484 (501)
T ss_pred ccccCC
Confidence 988754
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-70 Score=652.43 Aligned_cols=448 Identities=20% Similarity=0.299 Sum_probs=333.0
Q ss_pred EEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCC--CCCCeeE-------------EeC
Q 001580 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP--VSDASAV-------------IRG 106 (1050)
Q Consensus 42 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~--~~g~~~~-------------~~~ 106 (1050)
|+++|++++|+ ++++|+|+||++++|++++|+|+||||||||+++|+|+++| ++|.+.. .+.
T Consensus 2 l~i~~l~~~~~---~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFG---GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeC---CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 78999999996 35799999999999999999999999999999999999986 5666532 123
Q ss_pred cEEEEecCCCCC-cccHHHHhccCCCC-------CHHH----HHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHH
Q 001580 107 TVAYVPQVSWIF-NATVRDNILFGSAF-------EPAR----YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 174 (1050)
Q Consensus 107 ~i~~v~Q~~~l~-~~TV~eni~~g~~~-------~~~~----~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrq 174 (1050)
.+|||+|++.++ ..||+||+.++... +... ....++..++... .......+|||||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~q 148 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDAD----------NVTRPVGDYGGGQQQ 148 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCC----------cccCchhhCCHHHHH
Confidence 599999998776 67999999876321 1111 1122222222110 011234689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhh
Q 001580 175 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 253 (1050)
Q Consensus 175 Rv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 253 (1050)
||+|||||+.+|++|||||||++||+.++.++++.+.+...+|+|+|+||||++++.. ||+|++|++|+++..|+.+++
T Consensus 149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 9999999999999999999999999999999999887766668999999999999875 799999999998765432111
Q ss_pred hcChHHHHHHHHHhhhhhhhhhhcccCcccccCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhhcccccHHHHH
Q 001580 254 SNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLS 333 (1050)
Q Consensus 254 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (1050)
... .
T Consensus 229 ~~~-~--------------------------------------------------------------------------- 232 (500)
T TIGR02633 229 SED-D--------------------------------------------------------------------------- 232 (500)
T ss_pred CHH-H---------------------------------------------------------------------------
Confidence 000 0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 334 RYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAA 413 (1050)
Q Consensus 334 ~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 413 (1050)
T Consensus 233 -------------------------------------------------------------------------------- 232 (500)
T TIGR02633 233 -------------------------------------------------------------------------------- 232 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 414 KRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLL 493 (1050)
Q Consensus 414 ~~l~~~l~~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~ 493 (1050)
+ +. . +
T Consensus 233 ------------------------------~------~~----~----~------------------------------- 237 (500)
T TIGR02633 233 ------------------------------I------IT----M----M------------------------------- 237 (500)
T ss_pred ------------------------------H------HH----H----H-------------------------------
Confidence 0 00 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001580 494 FYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEI 573 (1050)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (1050)
.
T Consensus 238 -------~------------------------------------------------------------------------ 238 (500)
T TIGR02633 238 -------V------------------------------------------------------------------------ 238 (500)
T ss_pred -------h------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCC
Q 001580 574 VGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIES 653 (1050)
Q Consensus 574 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~ 653 (1050)
+.. ... ..+.. + .
T Consensus 239 ----------------~~~--------------------------------------------~~~--~~~~~-~----~ 251 (500)
T TIGR02633 239 ----------------GRE--------------------------------------------ITS--LYPHE-P----H 251 (500)
T ss_pred ----------------Ccc--------------------------------------------ccc--ccccc-c----c
Confidence 000 000 00000 0 0
Q ss_pred CCCCCCCCCCccEEEEEEEEEeCCC-CCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccC-CccEEEECCeec
Q 001580 654 NRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-ERGRILIDGFDI 731 (1050)
Q Consensus 654 ~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p-~~G~i~~~g~~i 731 (1050)
+ +....++++|++++|+.+ ..++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++
T Consensus 252 --~----~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~ 325 (500)
T TIGR02633 252 --E----IGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPV 325 (500)
T ss_pred --C----CCCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEEC
Confidence 0 011248999999999421 23699999999999999999999999999999999999996 899999999998
Q ss_pred CCCCh-HHHhhheEEEcCCc---cccc-ccHHHhcccCCC--CCH-HHHHHHHHHhcHHHHHHHccCCcch-hhhcCCCC
Q 001580 732 AKFGL-MDLRKILGIIPQSP---VLFS-GTVRFNLDPFSE--HSD-ADLWEALERAHLKDAIRRNSLGLDA-QVSEAGEN 802 (1050)
Q Consensus 732 ~~~~~-~~~r~~i~~v~Q~~---~lf~-~tv~~nl~~~~~--~~~-~~~~~~l~~~~~~~~i~~~p~gl~t-~v~~~~~~ 802 (1050)
...+. ..+|++++|+||++ .+|. .|+++|+.+... ... ..+........+.++++.+ |+.. ........
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~ 403 (500)
T TIGR02633 326 DIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRL--KVKTASPFLPIGR 403 (500)
T ss_pred CCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhc--CccCCCccCcccc
Confidence 65443 45678899999996 3665 499999975310 000 0000011112234455554 3432 24555678
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEE
Q 001580 803 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 880 (1050)
Q Consensus 803 LSgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~ 880 (1050)
||||||||++|||||+.+|++|||||||++||+.+.+.+++.|+++. ++.|||+||||++++.. ||++++|++|+++.
T Consensus 404 LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~ 483 (500)
T TIGR02633 404 LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKG 483 (500)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998864 47899999999999977 99999999999998
Q ss_pred ecChhHH
Q 001580 881 YDTPEEL 887 (1050)
Q Consensus 881 ~g~~~el 887 (1050)
.++.+++
T Consensus 484 ~~~~~~~ 490 (500)
T TIGR02633 484 DFVNHAL 490 (500)
T ss_pred EEccccC
Confidence 7765443
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-68 Score=652.99 Aligned_cols=264 Identities=19% Similarity=0.271 Sum_probs=189.1
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheE
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 744 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 744 (1050)
.|+++||+++|++. ++|+|+||+|.+|+++||+||||||||||+++|+|+++|++|+|.+++. .++|
T Consensus 312 ~l~~~~l~~~y~~~--~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 378 (638)
T PRK10636 312 LLKMEKVSAGYGDR--IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKLG 378 (638)
T ss_pred eEEEEeeEEEeCCe--eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEEE
Confidence 59999999999643 6999999999999999999999999999999999999999999999741 2699
Q ss_pred EEcCCc--cccc-ccHHHhcccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHHHHHHHcc
Q 001580 745 IIPQSP--VLFS-GTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLSLSRALLR 819 (1050)
Q Consensus 745 ~v~Q~~--~lf~-~tv~~nl~~~~-~~~~~~~~~~l~~~~~~~~i~~~p~gl~-t~v~~~~~~LSgGq~qrl~lArall~ 819 (1050)
|+||++ .++. .|+.+++.... .....++.+ ++..+ |+. .........|||||||||+|||+|+.
T Consensus 379 y~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~L~~~--~l~~~~~~~~~~~LSgGekqRl~La~~l~~ 447 (638)
T PRK10636 379 YFAQHQLEFLRADESPLQHLARLAPQELEQKLRD---------YLGGF--GFQGDKVTEETRRFSGGEKARLVLALIVWQ 447 (638)
T ss_pred EecCcchhhCCccchHHHHHHHhCchhhHHHHHH---------HHHHc--CCChhHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 999985 2433 37777763211 112223333 33332 332 23445567899999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEE-EecChhHHhhcC-CChHH
Q 001580 820 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVL-EYDTPEELLSNE-GSSFS 896 (1050)
Q Consensus 820 ~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~-~~g~~~el~~~~-~~~~~ 896 (1050)
+|+||||||||++||+.+...+.+.|+++ ++|||+||||++++.. ||+|++|++|+++ ..|+++++.... ...-.
T Consensus 448 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~~~~~~ 525 (638)
T PRK10636 448 RPNLLLLDEPTNHLDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQWLSDVQKQ 525 (638)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHHHHhhhhhh
Confidence 99999999999999999999999999986 4699999999999987 9999999999997 679999985421 00000
Q ss_pred HHHH---h--hccch---HHHHHHHhhc-ccchhhhhhhhhccchhhhHHHhhHHHHHhccchhhcc
Q 001580 897 KMVQ---S--TGAAN---AQYLRSLVLG-GEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVSL 954 (1050)
Q Consensus 897 ~~~~---~--~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 954 (1050)
.... . ..... .......... .....+.+++.+.+|.++..++....++.++++.+..+
T Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~ 592 (638)
T PRK10636 526 ENQTDEAPKENNANSAQARKDQKRREAELRTQTQPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELY 592 (638)
T ss_pred hhhhccccccccccccccchhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhc
Confidence 0000 0 00000 0000000000 00011122344568888888888888888888766543
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-69 Score=630.26 Aligned_cols=488 Identities=25% Similarity=0.351 Sum_probs=341.1
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeEEeC-cEEEEecCCCCC
Q 001580 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG-TVAYVPQVSWIF 118 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~-~i~~v~Q~~~l~ 118 (1050)
..|.++|++++|+ ++++|+++||++.+|+++||||+|||||||||++|+|...|++|.+...++ +|||++|++.+.
T Consensus 2 ~~i~~~~ls~~~g---~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~ 78 (530)
T COG0488 2 SMITLENLSLAYG---DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLD 78 (530)
T ss_pred ceEEEeeeEEeeC---CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcC
Confidence 4689999999995 578999999999999999999999999999999999999999988776554 799999999987
Q ss_pred -cccHHHHhccCCCCCH---HHHHHHHH---------HhCcH------------HH-HhcCCCCCcccccCCCCCCCHHH
Q 001580 119 -NATVRDNILFGSAFEP---ARYEKAID---------VTSLQ------------HD-LDLLPGGDVTEIGERGVNISGGQ 172 (1050)
Q Consensus 119 -~~TV~eni~~g~~~~~---~~~~~~~~---------~~~l~------------~~-~~~~~~g~~t~vg~~g~~LSGGq 172 (1050)
..||.+.+..+...-. .+++.... ...+. .. ...+.+-..+.......+|||||
T Consensus 79 ~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~ 158 (530)
T COG0488 79 PEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGW 158 (530)
T ss_pred CCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHH
Confidence 6699999987632100 01111100 00000 00 01111111111133457899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEe-eccCh
Q 001580 173 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVK-EEGTF 250 (1050)
Q Consensus 173 rqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~-~~g~~ 250 (1050)
|.||+||+||..+||+|||||||||||.+++.|+.++|.+.. | |+|+||||++||+. |++|+.++.|++. +.|.|
T Consensus 159 r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~--g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny 235 (530)
T COG0488 159 RRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP--G-TVIVVSHDRYFLDNVATHILELDRGKLTPYKGNY 235 (530)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC--C-cEEEEeCCHHHHHHHhhheEEecCCceeEecCCH
Confidence 999999999999999999999999999999999999987544 5 99999999999998 5999999999765 57777
Q ss_pred hhhhcChHHHHHHHHHhhhhhhhhhhcccCcccccCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhhcccccHH
Q 001580 251 EDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFK 330 (1050)
Q Consensus 251 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (1050)
+.+....+.........
T Consensus 236 ~~~~~~r~~~~~~~~~~--------------------------------------------------------------- 252 (530)
T COG0488 236 SSYLEQKAERLRQEAAA--------------------------------------------------------------- 252 (530)
T ss_pred HHHHHHHHHHHHHHHHH---------------------------------------------------------------
Confidence 76553321110000000
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 331 VLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSL 410 (1050)
Q Consensus 331 ~~~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 410 (1050)
T Consensus 253 -------------------------------------------------------------------------------- 252 (530)
T COG0488 253 -------------------------------------------------------------------------------- 252 (530)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 411 YAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPL 490 (1050)
Q Consensus 411 ~~~~~l~~~l~~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 490 (1050)
T Consensus 253 -------------------------------------------------------------------------------- 252 (530)
T COG0488 253 -------------------------------------------------------------------------------- 252 (530)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001580 491 LLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIR 570 (1050)
Q Consensus 491 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (1050)
+.+..++. .+..++++....-+.-
T Consensus 253 ----------~~~~~~~~------------~~~~~~i~r~~~~~~~---------------------------------- 276 (530)
T COG0488 253 ----------YEKQQKEL------------AKEQEWIRRGKAAASK---------------------------------- 276 (530)
T ss_pred ----------HHHHHHHH------------HHHHHHHHHHHhccch----------------------------------
Confidence 00000000 0000000000000000
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcCCCCCc
Q 001580 571 LEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNY--IELPSEAP 648 (1050)
Q Consensus 571 ~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~--~~~~~e~~ 648 (1050)
....+.....++++... ...|....
T Consensus 277 -----------------------------------------------------~k~a~sr~k~l~k~~~~~~~~~~~~~~ 303 (530)
T COG0488 277 -----------------------------------------------------AKKAKSRIKRLEKLEARLAEERPVEEG 303 (530)
T ss_pred -----------------------------------------------------HHHHHHHHHHHHHHHhhhhhccccccc
Confidence 00000001111111110 01111100
Q ss_pred cccCCCCCCCC-CCCCccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEEC
Q 001580 649 LVIESNRPPPG-WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 727 (1050)
Q Consensus 649 ~~~~~~~~~~~-~~~~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~ 727 (1050)
....-..+++. ...+..++++|++++|+++ +++++++||.|.+|+++||+||||+|||||+++|+|...|.+|+|.++
T Consensus 304 ~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g 382 (530)
T COG0488 304 KPLAFRFPPPGKRLGKLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVG 382 (530)
T ss_pred ccceeeccCCcccCCCeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeC
Confidence 00000011111 1223458999999999654 479999999999999999999999999999999999999999999987
Q ss_pred CeecCCCChHHHhhheEEEcCCcc-ccc-ccHHHhcccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCC
Q 001580 728 GFDIAKFGLMDLRKILGIIPQSPV-LFS-GTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFS 804 (1050)
Q Consensus 728 g~~i~~~~~~~~r~~i~~v~Q~~~-lf~-~tv~~nl~~~~~-~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LS 804 (1050)
-. -++||++|+.. ++. .|+.+++....+ ..+.+++..|.+.++... . +......||
T Consensus 383 ~~-----------v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~---------~-~~~~v~~LS 441 (530)
T COG0488 383 ET-----------VKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGE---------D-QEKPVGVLS 441 (530)
T ss_pred Cc-----------eEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChH---------H-HhCchhhcC
Confidence 31 36999999983 443 389888864432 235566666666554332 2 234456799
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEe-c
Q 001580 805 VGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEY-D 882 (1050)
Q Consensus 805 gGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~-g 882 (1050)
||||.||.||+.++.+|++||||||||+||.++...+.++|.+ ..+|||+||||.++++. |++|+++++ ++..+ |
T Consensus 442 GGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~--f~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g 518 (530)
T COG0488 442 GGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLD--FEGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEG 518 (530)
T ss_pred HhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCC
Confidence 9999999999999999999999999999999999999999998 68899999999999998 999999999 77776 9
Q ss_pred ChhHHhhc
Q 001580 883 TPEELLSN 890 (1050)
Q Consensus 883 ~~~el~~~ 890 (1050)
+++++.+.
T Consensus 519 ~y~~y~~~ 526 (530)
T COG0488 519 GYEDYLEQ 526 (530)
T ss_pred CHHHHHHh
Confidence 99998764
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-66 Score=643.59 Aligned_cols=542 Identities=23% Similarity=0.327 Sum_probs=407.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhccccccCCC-Chh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 347 ILLLCYFLTETLRVSSSTWLSYWTDQSSLKTH-GPL-FYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSI 424 (1050)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~-~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 424 (1050)
..+++.++...+....|.++....|....... ... .+...+.++.+...++.+++.++....+.+...+++..+++++
T Consensus 143 ~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l 222 (694)
T TIGR01846 143 EVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHL 222 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555566666666665432211 111 2223344455567788899999999999999999999999999
Q ss_pred HcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 425 LRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQST 504 (1050)
Q Consensus 425 l~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~~~~~~~~~~~~ 504 (1050)
+++|+.||+++++|++++|+ +|++.+...+.......+..+...+..+++++++++...++++..+++++.+..+..+.
T Consensus 223 ~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~ 301 (694)
T TIGR01846 223 LGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPI 301 (694)
T ss_pred HcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 69999987765544444433333333344444555544443333333333333333333
Q ss_pred HHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHH
Q 001580 505 AREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIV---GGLMIWL 581 (1050)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~ 581 (1050)
.++..+......++..+.+.|+++|+++||+++.++++.+.+.+..+...+..........+.......+ ..+++++
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~ 381 (694)
T TIGR01846 302 LRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLW 381 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3333333334556778899999999999999999988877777666655444433333333333222222 2222222
Q ss_pred HHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCC
Q 001580 582 TATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP 661 (1050)
Q Consensus 582 ~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~ 661 (1050)
++.+.+. .+..+.. .+..+..+...+..++..+.......+....+.+|+.++++.+++.... .... ...
T Consensus 382 ~g~~lv~-~g~it~G-----~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~--~~~~--~~~ 451 (694)
T TIGR01846 382 FGAHLVI-GGALSPG-----QLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA--GLAA--LPE 451 (694)
T ss_pred HHHHHHH-cCCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC--CCCC--CCC
Confidence 2333332 2222211 1122333444566677777778888889999999999999877653211 1001 112
Q ss_pred CCccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhh
Q 001580 662 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 741 (1050)
Q Consensus 662 ~~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~ 741 (1050)
..+.|+++||+|+|+++.+++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|++||+|+++++..++|+
T Consensus 452 ~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~ 531 (694)
T TIGR01846 452 LRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRR 531 (694)
T ss_pred CCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHH
Confidence 24579999999999755457999999999999999999999999999999999999999999999999999999999999
Q ss_pred heEEEcCCcccccccHHHhcccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccC
Q 001580 742 ILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 820 (1050)
Q Consensus 742 ~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~ 820 (1050)
+|+||||++.+|++|++|||.++. ..++++++++++.++++++++++|.|++|.++++|.+||||||||++||||++++
T Consensus 532 ~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~ 611 (694)
T TIGR01846 532 QMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGN 611 (694)
T ss_pred hCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhC
Confidence 999999999999999999998764 4688999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHH
Q 001580 821 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 900 (1050)
Q Consensus 821 p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~ 900 (1050)
|+|||||||||+||+++++.+.+.|++..+++|+|+||||++++..||+|++|++|++++.|+|++++++. +.|.+++.
T Consensus 612 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~-~~y~~l~~ 690 (694)
T TIGR01846 612 PRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQ-GLYARLWQ 690 (694)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcC-ChHHHHHH
Confidence 99999999999999999999999999987889999999999999999999999999999999999999864 67887765
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-66 Score=630.02 Aligned_cols=543 Identities=23% Similarity=0.364 Sum_probs=421.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhccccccCCCChh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 345 VLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPL--FYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLH 422 (1050)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 422 (1050)
+++.+++.++...+....+.++....+.......... .+..++.++.+...++.+++.++....+.+....++..+++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~ 95 (571)
T TIGR02203 16 LVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFE 95 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555556666554443222111111 22234555666677888889999999999999999999999
Q ss_pred HHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 423 SILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQ 502 (1050)
Q Consensus 423 ~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~~~~~~~~~~ 502 (1050)
++++.|..+|++.+.|++++|+++|+..+...+...+..++..+..++..+++++++++...+++++++++.+.....+.
T Consensus 96 ~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~ 175 (571)
T TIGR02203 96 KLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVS 175 (571)
T ss_pred HHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988877776777677777777666666666665555555555555555555
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHH
Q 001580 503 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVG---GLMI 579 (1050)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~ 579 (1050)
+..++..+......++..+.+.|.++|+.+||+++.++++.+.+.+..+...+..........+......++. .+++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (571)
T TIGR02203 176 KRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVV 255 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555566666778889999999999999999999988777777666555544443333333333222222 2222
Q ss_pred HHHHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCC
Q 001580 580 WLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPG 659 (1050)
Q Consensus 580 ~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~ 659 (1050)
++++.+.+. .+..+. +.+..++.++..+..++..+............+.+|+.++++.+++.+.. ..+.
T Consensus 256 ~~~g~~~~~-~g~lt~-----g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~-- 324 (571)
T TIGR02203 256 LFIALFQAQ-AGSLTA-----GDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG---TRAI-- 324 (571)
T ss_pred HHHHHHHHH-cCCCCH-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---CCCC--
Confidence 222222222 232221 22223334455666777777778888889999999999998765543211 1111
Q ss_pred CCCCccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHH
Q 001580 660 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL 739 (1050)
Q Consensus 660 ~~~~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~ 739 (1050)
.+..+.++++||+|+|++..+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|++||+++.+++..++
T Consensus 325 ~~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~ 404 (571)
T TIGR02203 325 ERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASL 404 (571)
T ss_pred CCCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHH
Confidence 12235699999999997544579999999999999999999999999999999999999999999999999999999999
Q ss_pred hhheEEEcCCcccccccHHHhcccCC--CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHH
Q 001580 740 RKILGIIPQSPVLFSGTVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 817 (1050)
Q Consensus 740 r~~i~~v~Q~~~lf~~tv~~nl~~~~--~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAral 817 (1050)
|++|+||||+|.+|++|+++||.++. +.++++++++++.+++++++.++|.|+||.+++.|.+||||||||++||||+
T Consensus 405 ~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARal 484 (571)
T TIGR02203 405 RRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARAL 484 (571)
T ss_pred HhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999774 4789999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHH
Q 001580 818 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSK 897 (1050)
Q Consensus 818 l~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~ 897 (1050)
+++|+|||||||||+||+++++.+.+.|++..+++|+|+||||.+.+..||+|++|++|++++.|+|++++++. +.|..
T Consensus 485 l~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~-~~~~~ 563 (571)
T TIGR02203 485 LKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARN-GLYAQ 563 (571)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcC-CHHHH
Confidence 99999999999999999999999999999988899999999999999899999999999999999999998764 45665
Q ss_pred HH
Q 001580 898 MV 899 (1050)
Q Consensus 898 ~~ 899 (1050)
.+
T Consensus 564 ~~ 565 (571)
T TIGR02203 564 LH 565 (571)
T ss_pred HH
Confidence 44
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-66 Score=583.05 Aligned_cols=531 Identities=24% Similarity=0.333 Sum_probs=380.1
Q ss_pred HHHHHHhhhhhhhhhccccccC------CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 001580 355 TETLRVSSSTWLSYWTDQSSLK------THGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAP 428 (1050)
Q Consensus 355 ~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p 428 (1050)
+..+.+..|..+...++..... ...+.-.+..|.+..++..++..++.+++....++..++...++|++++.+.
T Consensus 42 aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld 121 (591)
T KOG0057|consen 42 AKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLD 121 (591)
T ss_pred hhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455555555554444332211 1122344566778888899999999999999999999999999999999999
Q ss_pred chhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 001580 429 MVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQST-ARE 507 (1050)
Q Consensus 429 ~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~~~~~~~~~~~~-~~~ 507 (1050)
+.+|.+..+|.+.+.+..-...+...+...+..++..++.+......+.+-.......+....+..|.++..+... ..+
T Consensus 122 ~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~ 201 (591)
T KOG0057|consen 122 LSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNR 201 (591)
T ss_pred HHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHH
Confidence 9999999999998888777777766555555555555444443332222222111112222222333333222111 122
Q ss_pred HHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 508 VKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAV 587 (1050)
Q Consensus 508 ~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v 587 (1050)
.++....+.....+...+.+.+..+||+|+.|++..+.+...+....+...........+.+.-..+..........+..
T Consensus 202 fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~ 281 (591)
T KOG0057|consen 202 FRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGS 281 (591)
T ss_pred HHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333344455667788999999999999999999999988888777766655443333333322222111111111100
Q ss_pred --HhcCccchhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCC
Q 001580 588 --VQNGSAENQEAFASTMGLLL---SYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPS 662 (1050)
Q Consensus 588 --~~~~~~~~~~~~~~~~g~~l---~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~ 662 (1050)
..++.. ++|-++ ++...+..++..+-..+......+....-+.... +.+.. ..+. +.+....
T Consensus 282 ~gi~~~~m--------tvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~--~~~~~-i~~~--~~~i~~~ 348 (591)
T KOG0057|consen 282 NGIAAGKM--------TVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILL--EVDED-IQEA--ALPIELF 348 (591)
T ss_pred hhhhhccc--------cccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhh--hhhhh-hhhc--cCCcccC
Confidence 011111 122222 2222333333333333322222222222221111 11100 0000 1111223
Q ss_pred CccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhh
Q 001580 663 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 742 (1050)
Q Consensus 663 ~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~ 742 (1050)
++.|+|+||+|.|+++ +++|+++||+|++||+|||+|+|||||||++|+|+|+++ ++|+|++||+|+++++++.+|+.
T Consensus 349 ~~~I~F~dV~f~y~~k-~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~ 426 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYGPK-RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQS 426 (591)
T ss_pred CCcEEEEeeEEEeCCC-CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhh
Confidence 4569999999999865 469999999999999999999999999999999999999 99999999999999999999999
Q ss_pred eEEEcCCcccccccHHHhcccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 001580 743 LGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 821 (1050)
Q Consensus 743 i~~v~Q~~~lf~~tv~~nl~~~~~-~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p 821 (1050)
|||||||..||++||.+||.+++. .+++++.++++++++++.+.++|.||+|.+||+|..|||||||||+||||++++|
T Consensus 427 Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda 506 (591)
T KOG0057|consen 427 IGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDA 506 (591)
T ss_pred eeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCC
Confidence 999999999999999999998764 6899999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHh
Q 001580 822 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 901 (1050)
Q Consensus 822 ~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~ 901 (1050)
+|++||||||+||.+||+.+.+.+.....++|+|+|.||+++++.||+|+++++|++.+.|+|+||++ ..+.|..+|..
T Consensus 507 ~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~~ 585 (591)
T KOG0057|consen 507 PILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWTT 585 (591)
T ss_pred CeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhcc
Confidence 99999999999999999999999999888999999999999999999999999999999999999999 56677777654
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-65 Score=624.94 Aligned_cols=544 Identities=22% Similarity=0.298 Sum_probs=391.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 346 LILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSIL 425 (1050)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll 425 (1050)
.+.+++.++...+....+.++....|..... .....+..++.++.+...+..+...++......+....++..++++++
T Consensus 22 ~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 100 (588)
T PRK13657 22 ILLAVANVLLAAATFAEPILFGRIIDAISGK-GDIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFERII 100 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555566666666665543221 111112222223333333334444444444455555567779999999
Q ss_pred cCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 426 RAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTA 505 (1050)
Q Consensus 426 ~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~~~~~~~~~~~~~ 505 (1050)
+.|..+|.+.+.|++++|+++|++.+...+...+..++..++..+..+++++.+.+...++++.++++++.+..++.+..
T Consensus 101 ~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~ 180 (588)
T PRK13657 101 QLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRKT 180 (588)
T ss_pred hCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998766555554444444444444444445555444433333333334444444444
Q ss_pred HHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHH
Q 001580 506 REVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEI---VGGLMIWLT 582 (1050)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~ 582 (1050)
++..+......+.+.+.+.|.++|+++||+|+.++.+.+.+.+..+...+..........+.....++ +..+++++.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (588)
T PRK13657 181 KDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVL 260 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555566778889999999999999999998877777666665544433322222222222222 222222233
Q ss_pred HHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCC
Q 001580 583 ATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPS 662 (1050)
Q Consensus 583 ~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~ 662 (1050)
+.+.+. .+..+... +..++.++..+..++..+............+.+|+.++++.+++.+.. ... ....+.
T Consensus 261 g~~~v~-~g~lt~g~-----~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~~~-~~~~~~ 331 (588)
T PRK13657 261 GAALVQ-KGQLRVGE-----VVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP--PGA-IDLGRV 331 (588)
T ss_pred HHHHHH-cCCcCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC--CCC-CCcCCC
Confidence 333333 33333221 122233334455556666666666667778888888877654332110 010 000112
Q ss_pred CccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhh
Q 001580 663 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 742 (1050)
Q Consensus 663 ~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~ 742 (1050)
.+.|+++||+|+|+++ +++|+|+||+++|||++||+|+||||||||+++|+|+++|++|+|++||.++.+++..++|++
T Consensus 332 ~~~I~~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 410 (588)
T PRK13657 332 KGAVEFDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRN 410 (588)
T ss_pred CCeEEEEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhh
Confidence 3469999999999743 469999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEcCCcccccccHHHhcccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 001580 743 LGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 821 (1050)
Q Consensus 743 i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p 821 (1050)
|+|+||+|.+|++|+++||.++. +.++++++++++.+++.+++.++|.|+||.++++|.+||||||||++|||||+++|
T Consensus 411 i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~ 490 (588)
T PRK13657 411 IAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDP 490 (588)
T ss_pred eEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999874 46789999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHh
Q 001580 822 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 901 (1050)
Q Consensus 822 ~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~ 901 (1050)
+|||||||||+||+++++.+++.|++..+++|+|+||||++.++.||+|++|++|++++.|+|++++++. +.|.+++..
T Consensus 491 ~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~-~~y~~l~~~ 569 (588)
T PRK13657 491 PILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARG-GRFAALLRA 569 (588)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCC-ChHHHHHHH
Confidence 9999999999999999999999999887789999999999999999999999999999999999999764 567776653
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-68 Score=582.12 Aligned_cols=497 Identities=23% Similarity=0.386 Sum_probs=383.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 394 QVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTF 473 (1050)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~ 473 (1050)
+-++.-+++++.....++..+.+.-++|+|+..+++.|.-.+.+|+++.-+......+. .....+......+..+...+
T Consensus 272 sG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~ 350 (790)
T KOG0056|consen 272 SGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAM 350 (790)
T ss_pred ccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhh
Confidence 34666778888889999999999999999999999999999999999888776666554 34444444444444444443
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHH
Q 001580 474 VLIGIV-STMSLWAIMPLLLLFYAAY-LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMD 551 (1050)
Q Consensus 474 ~~~~~~-~~~~~~~~~~lll~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~ 551 (1050)
+..++. .++..++++..++++.... ..-..+.+..+++. .+...-.+.-.+++-+..++|-|++++...+.+.+.+.
T Consensus 351 vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn-~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil 429 (790)
T KOG0056|consen 351 VYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMN-NSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAIL 429 (790)
T ss_pred hhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhh-hhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHH
Confidence 333221 2222222222222211111 11111111111111 11112233457889999999999999999999988888
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--hcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 552 KNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVV--QNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAEN 629 (1050)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~--~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 629 (1050)
..++.....+..-..+...-..+.++-...++.+.+. ..+..+ .+-+.++.+|.+.+..|++.+-.....+++
T Consensus 430 ~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~lt-----VGDfVlf~TYliqLy~PLN~FGT~YR~iQ~ 504 (790)
T KOG0056|consen 430 KYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLT-----VGDFVLFLTYLIQLYMPLNFFGTYYRSIQK 504 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeecccc-----ccceehHHHHHHHHhCchHHHHHHHHHHHH
Confidence 8777766554333333332222222222222222111 011111 122345677888888899999888899999
Q ss_pred HHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHH
Q 001580 630 SLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSM 709 (1050)
Q Consensus 630 ~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTl 709 (1050)
.+..+|++.++++.++|. .+....+|.....|.|+|+||+|.|+++ +++|+||||+++||+.+|+|||||+||||+
T Consensus 505 nfiDmEnmfdllkee~eV---vd~P~a~pl~~~~G~i~fsnvtF~Y~p~-k~vl~disF~v~pGktvAlVG~SGaGKSTi 580 (790)
T KOG0056|consen 505 NFIDMENMFDLLKEEPEV---VDLPGAPPLKVTQGKIEFSNVTFAYDPG-KPVLSDISFTVQPGKTVALVGPSGAGKSTI 580 (790)
T ss_pred hhhhHHHHHHHhhcCchh---hcCCCCCCccccCCeEEEEEeEEecCCC-CceeecceEEecCCcEEEEECCCCCchhHH
Confidence 999999999988654442 2222333333456889999999999876 489999999999999999999999999999
Q ss_pred HHHHhccccCCccEEEECCeecCCCChHHHhhheEEEcCCcccccccHHHhcccCCC-CCHHHHHHHHHHhcHHHHHHHc
Q 001580 710 LNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRN 788 (1050)
Q Consensus 710 l~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~-~~~~~~~~~l~~~~~~~~i~~~ 788 (1050)
+++|.++++.++|.|.+||+||++...+++|++||+||||..||++||..||.+.+. ++++++.+|++++++++-|..+
T Consensus 581 mRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~f 660 (790)
T KOG0056|consen 581 MRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQF 660 (790)
T ss_pred HHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999998754 6899999999999999999999
Q ss_pred cCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcC
Q 001580 789 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCD 868 (1050)
Q Consensus 789 p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d 868 (1050)
|+||+|.+||+|-.||||||||||+||+++++|.|++|||+||+||..+++.|+.+|.+...++|.|+|+||++++-+||
T Consensus 661 PegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD 740 (790)
T KOG0056|consen 661 PEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNAD 740 (790)
T ss_pred chhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCEEEEecChhHHhhcCCChHHHHHHh
Q 001580 869 RILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 901 (1050)
Q Consensus 869 ~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~ 901 (1050)
.|+|+++|+|+|.|+|+||+++++|.|..|++.
T Consensus 741 ~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~ 773 (790)
T KOG0056|consen 741 LILVISNGRIVERGRHEELLKRDGGAYADMWQA 773 (790)
T ss_pred EEEEEeCCeEeecCcHHHHHhccCCcHHHHHHH
Confidence 999999999999999999999999999999974
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-68 Score=637.99 Aligned_cols=436 Identities=21% Similarity=0.327 Sum_probs=329.5
Q ss_pred EEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeEE-------------eCcEEE
Q 001580 44 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------------RGTVAY 110 (1050)
Q Consensus 44 ~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~-------------~~~i~~ 110 (1050)
++|++++|+ ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+..- +..++|
T Consensus 1 ~~nl~~~~~---~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFP---GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeC---CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 468999996 3579999999999999999999999999999999999999998865421 235999
Q ss_pred EecCCCCC-cccHHHHhccCCC-C-----CHHH----HHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHH
Q 001580 111 VPQVSWIF-NATVRDNILFGSA-F-----EPAR----YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 179 (1050)
Q Consensus 111 v~Q~~~l~-~~TV~eni~~g~~-~-----~~~~----~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LA 179 (1050)
++|++.++ ..||+||+.++.. . +... ....++..++. ........+|||||||||+||
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv~lA 146 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDID-----------IDPRAKVATLSVSQMQMIEIA 146 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCC-----------CCccCchhhCCHHHHHHHHHH
Confidence 99998775 6799999987631 1 1111 11122222221 122345578999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhhhcChH
Q 001580 180 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNGE 258 (1050)
Q Consensus 180 raL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 258 (1050)
|||+.+|++|||||||++||+.+++++++.+.+....|+|+|++|||++++.. ||++++|++|++++.|+.+++... .
T Consensus 147 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~-~ 225 (491)
T PRK10982 147 KAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMD-K 225 (491)
T ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCCHH-H
Confidence 99999999999999999999999999999887765668999999999999875 799999999999876654331100 0
Q ss_pred HHHHHHHHhhhhhhhhhhcccCcccccCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhhcccccHHHHHHHHHH
Q 001580 259 LFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDA 338 (1050)
Q Consensus 259 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 338 (1050)
..
T Consensus 226 ----~~-------------------------------------------------------------------------- 227 (491)
T PRK10982 226 ----II-------------------------------------------------------------------------- 227 (491)
T ss_pred ----HH--------------------------------------------------------------------------
Confidence 00
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 339 LGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHD 418 (1050)
Q Consensus 339 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 418 (1050)
T Consensus 228 -------------------------------------------------------------------------------- 227 (491)
T PRK10982 228 -------------------------------------------------------------------------------- 227 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 419 AMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAY 498 (1050)
Q Consensus 419 ~l~~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~~~~~~ 498 (1050)
.++
T Consensus 228 -----------------------~~~------------------------------------------------------ 230 (491)
T PRK10982 228 -----------------------AMM------------------------------------------------------ 230 (491)
T ss_pred -----------------------HHH------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 001580 499 LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLM 578 (1050)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 578 (1050)
+
T Consensus 231 --~----------------------------------------------------------------------------- 231 (491)
T PRK10982 231 --V----------------------------------------------------------------------------- 231 (491)
T ss_pred --h-----------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCC
Q 001580 579 IWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPP 658 (1050)
Q Consensus 579 ~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~ 658 (1050)
+.. ..+ ..+... . .
T Consensus 232 -----------~~~-----------------------------------------~~~-----~~~~~~-----~---~- 245 (491)
T PRK10982 232 -----------GRS-----------------------------------------LTQ-----RFPDKE-----N---K- 245 (491)
T ss_pred -----------CCC-----------------------------------------ccc-----cccccc-----C---C-
Confidence 000 000 000000 0 0
Q ss_pred CCCCCccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHH
Q 001580 659 GWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD 738 (1050)
Q Consensus 659 ~~~~~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~ 738 (1050)
+.+..|+++|++++| +++|+|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|.++...++..
T Consensus 246 --~~~~~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 319 (491)
T PRK10982 246 --PGEVILEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANE 319 (491)
T ss_pred --CCCcEEEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHH
Confidence 011248999999974 25999999999999999999999999999999999999999999999999998766543
Q ss_pred -HhhheEEEcCCcc---ccc-ccHHHhc-----ccCCC----CCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCC
Q 001580 739 -LRKILGIIPQSPV---LFS-GTVRFNL-----DPFSE----HSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENF 803 (1050)
Q Consensus 739 -~r~~i~~v~Q~~~---lf~-~tv~~nl-----~~~~~----~~~~~~~~~l~~~~~~~~i~~~p~gl~-t~v~~~~~~L 803 (1050)
+++.++|+||++. +|. .|+.+|. ..... ...... ...+.++++.+ |+. ........+|
T Consensus 320 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~L 392 (491)
T PRK10982 320 AINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRM-----KSDTQWVIDSM--RVKTPGHRTQIGSL 392 (491)
T ss_pred HHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHH-----HHHHHHHHHhc--CccCCCcccccccC
Confidence 4677999999963 555 3776663 21111 011111 11234455554 332 2346667789
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEe
Q 001580 804 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEY 881 (1050)
Q Consensus 804 SgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~ 881 (1050)
||||||||+||||++.+|+||||||||+|||+.+++.+++.|+++. +++|||+|||+++++.. |||+++|++|+++..
T Consensus 393 SgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~ 472 (491)
T PRK10982 393 SGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGI 472 (491)
T ss_pred CcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998864 58999999999999977 999999999999988
Q ss_pred cChhHH
Q 001580 882 DTPEEL 887 (1050)
Q Consensus 882 g~~~el 887 (1050)
++.+++
T Consensus 473 ~~~~~~ 478 (491)
T PRK10982 473 VDTKTT 478 (491)
T ss_pred EccccC
Confidence 776533
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-68 Score=639.93 Aligned_cols=442 Identities=24% Similarity=0.340 Sum_probs=329.2
Q ss_pred cEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeEE------------eCcE
Q 001580 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------RGTV 108 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~------------~~~i 108 (1050)
+|+++|++|+|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+... +..+
T Consensus 3 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred eEEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 5899999999963 469999999999999999999999999999999999999998876421 1238
Q ss_pred EEEecCCCC--C-------cccHHHHhccCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHH
Q 001580 109 AYVPQVSWI--F-------NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 179 (1050)
Q Consensus 109 ~~v~Q~~~l--~-------~~TV~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LA 179 (1050)
+|++|++.+ + ..||++|+.++.. ..++....++..++.+..+. ...+|||||||||+||
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la 147 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-DPARCEQLAQQFGITALLDR-----------RFKYLSTGETRKTLLC 147 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccchh-HHHHHHHHHHHcCCHhhhhC-----------CcccCCHHHHHHHHHH
Confidence 999998642 1 4689998875421 12344555666665543332 3368999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhhhcChH
Q 001580 180 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNGE 258 (1050)
Q Consensus 180 raL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 258 (1050)
|||+.+|++|||||||++||+.+++++++.+.+...+|+|+|++|||++++.. ||++++|++|+++..|+++++.....
T Consensus 148 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~ 227 (490)
T PRK10938 148 QALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQAL 227 (490)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcchh
Confidence 99999999999999999999999999999887765568999999999999875 79999999999988776554321100
Q ss_pred HHHHHHHHhhhhhhhhhhcccCcccccCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhhcccccHHHHHHHHHH
Q 001580 259 LFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDA 338 (1050)
Q Consensus 259 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 338 (1050)
...+..
T Consensus 228 -~~~~~~------------------------------------------------------------------------- 233 (490)
T PRK10938 228 -VAQLAH------------------------------------------------------------------------- 233 (490)
T ss_pred -hhhhhh-------------------------------------------------------------------------
Confidence 000000
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 339 LGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHD 418 (1050)
Q Consensus 339 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 418 (1050)
T Consensus 234 -------------------------------------------------------------------------------- 233 (490)
T PRK10938 234 -------------------------------------------------------------------------------- 233 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 419 AMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAY 498 (1050)
Q Consensus 419 ~l~~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~~~~~~ 498 (1050)
T Consensus 234 -------------------------------------------------------------------------------- 233 (490)
T PRK10938 234 -------------------------------------------------------------------------------- 233 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 001580 499 LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLM 578 (1050)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 578 (1050)
.+ .+.
T Consensus 234 ------~~-------------------~~~-------------------------------------------------- 238 (490)
T PRK10938 234 ------SE-------------------QLE-------------------------------------------------- 238 (490)
T ss_pred ------hh-------------------ccC--------------------------------------------------
Confidence 00 000
Q ss_pred HHHHHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC-CccccCCCCCC
Q 001580 579 IWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSE-APLVIESNRPP 657 (1050)
Q Consensus 579 ~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e-~~~~~~~~~~~ 657 (1050)
. ...+.. .+... .. ..
T Consensus 239 ------------------------------------------------------------~-~~~~~~~~~~~~-~~-~~ 255 (490)
T PRK10938 239 ------------------------------------------------------------G-VQLPEPDEPSAR-HA-LP 255 (490)
T ss_pred ------------------------------------------------------------c-cccCcccccccc-cc-cC
Confidence 0 000000 00000 00 00
Q ss_pred CCCCCCccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccC-CccEEEECCeecCC-CC
Q 001580 658 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-ERGRILIDGFDIAK-FG 735 (1050)
Q Consensus 658 ~~~~~~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p-~~G~i~~~g~~i~~-~~ 735 (1050)
.....++++|++++|++. .+|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++.. .+
T Consensus 256 ---~~~~~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~ 330 (490)
T PRK10938 256 ---ANEPRIVLNNGVVSYNDR--PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGET 330 (490)
T ss_pred ---CCCceEEEeceEEEECCe--eEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCC
Confidence 011249999999999643 699999999999999999999999999999999998876 69999999987632 23
Q ss_pred hHHHhhheEEEcCCccccc---ccHHHhcccC--C------CCCHHHHHHHHHHhcHHHHHHHccCCcch-hhhcCCCCC
Q 001580 736 LMDLRKILGIIPQSPVLFS---GTVRFNLDPF--S------EHSDADLWEALERAHLKDAIRRNSLGLDA-QVSEAGENF 803 (1050)
Q Consensus 736 ~~~~r~~i~~v~Q~~~lf~---~tv~~nl~~~--~------~~~~~~~~~~l~~~~~~~~i~~~p~gl~t-~v~~~~~~L 803 (1050)
....|++|+|+||++.++. .++.+++.+. . ..... .. ..+.+.++. .|+.. .......+|
T Consensus 331 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~l~~--~~l~~~~~~~~~~~L 402 (490)
T PRK10938 331 IWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDR-QQ-----KLAQQWLDI--LGIDKRTADAPFHSL 402 (490)
T ss_pred HHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHH-HH-----HHHHHHHHH--cCCchhhccCchhhC
Confidence 3346788999999986542 3676665321 1 01111 00 112233333 24444 445556789
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC-C-cEEEEeecCchhhhh--cCEEEEEeCCEEE
Q 001580 804 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-S-CTMLIIAHRLNTIID--CDRILLLDSGRVL 879 (1050)
Q Consensus 804 SgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~-~-~tvi~vtH~~~~~~~--~d~i~vl~~G~i~ 879 (1050)
|||||||++|||||+.+|+||||||||+|||+.+.+.+.+.|+++.+ + .|||+|||+++++.. ||++++|++|+++
T Consensus 403 SgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~ 482 (490)
T PRK10938 403 SWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIY 482 (490)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceE
Confidence 99999999999999999999999999999999999999999998753 4 479999999999964 8999999999998
Q ss_pred Eec
Q 001580 880 EYD 882 (1050)
Q Consensus 880 ~~g 882 (1050)
+.-
T Consensus 483 ~~~ 485 (490)
T PRK10938 483 RYV 485 (490)
T ss_pred Eee
Confidence 753
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-67 Score=636.30 Aligned_cols=480 Identities=22% Similarity=0.265 Sum_probs=330.2
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeEE-eCcEEEEecCCCCC
Q 001580 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-RGTVAYVPQVSWIF 118 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~-~~~i~~v~Q~~~l~ 118 (1050)
++|+++|++++|+. ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+... +..||||+|+|.++
T Consensus 5 ~~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~ 82 (556)
T PRK11819 5 YIYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLD 82 (556)
T ss_pred EEEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCC
Confidence 46999999999962 3579999999999999999999999999999999999999998877543 34699999999887
Q ss_pred -cccHHHHhccCCC-CCH--HHH------------------------HHHHHHh-------CcHHHHhcCCCCCcccccC
Q 001580 119 -NATVRDNILFGSA-FEP--ARY------------------------EKAIDVT-------SLQHDLDLLPGGDVTEIGE 163 (1050)
Q Consensus 119 -~~TV~eni~~g~~-~~~--~~~------------------------~~~~~~~-------~l~~~~~~~~~g~~t~vg~ 163 (1050)
..||.||+.++.. +.. ..+ ....+.. .....++.+.- .....
T Consensus 83 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl---~~~~~ 159 (556)
T PRK11819 83 PEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRC---PPWDA 159 (556)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCC---CcccC
Confidence 5699999987521 000 000 0000000 01111122111 11234
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCC
Q 001580 164 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEG 242 (1050)
Q Consensus 164 ~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G 242 (1050)
...+|||||||||+|||||+.+|++||||||||+||+.++.++.+.+.+.. .|+|+||||++++.. ||+|++|++|
T Consensus 160 ~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~~~~~~~~d~i~~l~~g 236 (556)
T PRK11819 160 KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDRYFLDNVAGWILELDRG 236 (556)
T ss_pred chhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCHHHHHhhcCeEEEEeCC
Confidence 557899999999999999999999999999999999999999999776543 599999999999986 6999999999
Q ss_pred eEe-eccChhhhhcChHH-HHHHHHHhhhhhhhhhhcccCcccccCCCCCCCCCCCCCCCCccccccccccccchhhhhh
Q 001580 243 MVK-EEGTFEDLSNNGEL-FQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQE 320 (1050)
Q Consensus 243 ~i~-~~g~~~~l~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1050)
+++ +.|+++++...... ...... .
T Consensus 237 ~i~~~~g~~~~~~~~~~~~~~~~~~------~------------------------------------------------ 262 (556)
T PRK11819 237 RGIPWEGNYSSWLEQKAKRLAQEEK------Q------------------------------------------------ 262 (556)
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHH------H------------------------------------------------
Confidence 986 67877665422100 000000 0
Q ss_pred hhhcccccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHH
Q 001580 321 ERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLA 400 (1050)
Q Consensus 321 ~~~~~~~~~~~~~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 400 (1050)
+.
T Consensus 263 --------------~~---------------------------------------------------------------- 264 (556)
T PRK11819 263 --------------EA---------------------------------------------------------------- 264 (556)
T ss_pred --------------HH----------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 401 NSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVS 480 (1050)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1050)
.
T Consensus 265 -------------------------------------------------~------------------------------ 265 (556)
T PRK11819 265 -------------------------------------------------A------------------------------ 265 (556)
T ss_pred -------------------------------------------------H------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Q 001580 481 TMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVN 560 (1050)
Q Consensus 481 ~~~~~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (1050)
.....++. .+.+......+ ..
T Consensus 266 -----------------------~~~~~~~~------------~~~~~~~~~~~---------------------~~--- 286 (556)
T PRK11819 266 -----------------------RQKALKRE------------LEWVRQSPKAR---------------------QA--- 286 (556)
T ss_pred -----------------------HHHHHHHH------------HHHHHHhhhhh---------------------HH---
Confidence 00000000 00000000000 00
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001580 561 MGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNY 640 (1050)
Q Consensus 561 ~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~ 640 (1050)
..+......++..+.
T Consensus 287 -----------------------------------------------------------------~~~~~~~~~~~~~~~ 301 (556)
T PRK11819 287 -----------------------------------------------------------------KSKARLARYEELLSE 301 (556)
T ss_pred -----------------------------------------------------------------HHHHHHHHHHHhhcc
Confidence 000000000010000
Q ss_pred hcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCC
Q 001580 641 IELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE 720 (1050)
Q Consensus 641 ~~~~~e~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~ 720 (1050)
.+.+.+.......+.........++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|+
T Consensus 302 --~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~ 377 (556)
T PRK11819 302 --EYQKRNETNEIFIPPGPRLGDKVIEAENLSKSFGDR--LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD 377 (556)
T ss_pred --cccccCCCceeecCCCCCCCCeEEEEEeEEEEECCe--eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 000000000000000001112359999999999653 6999999999999999999999999999999999999999
Q ss_pred ccEEEECCeecCCCChHHHhhheEEEcCCc-cccc-ccHHHhcccCCCC-----CHHHHHHHHHHhcHHHHHHHccCCcc
Q 001580 721 RGRILIDGFDIAKFGLMDLRKILGIIPQSP-VLFS-GTVRFNLDPFSEH-----SDADLWEALERAHLKDAIRRNSLGLD 793 (1050)
Q Consensus 721 ~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~-~lf~-~tv~~nl~~~~~~-----~~~~~~~~l~~~~~~~~i~~~p~gl~ 793 (1050)
+|+|.+++ + ..|||+||++ .++. .|+++|+.+.... .+.+.. ..++.+ |+.
T Consensus 378 ~G~i~~~~-~----------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~---------~~l~~~--~l~ 435 (556)
T PRK11819 378 SGTIKIGE-T----------VKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSR---------AYVGRF--NFK 435 (556)
T ss_pred CeEEEECC-c----------eEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHH---------HHHHhC--CCC
Confidence 99999954 2 1599999997 5665 4999998653211 111122 233332 443
Q ss_pred h-hhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEE
Q 001580 794 A-QVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRIL 871 (1050)
Q Consensus 794 t-~v~~~~~~LSgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~ 871 (1050)
. .......+||||||||++||||++.+|++|||||||++||+.+...+++.|++. .+|||+|||+++++.. ||+|+
T Consensus 436 ~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vtHd~~~~~~~~d~i~ 513 (556)
T PRK11819 436 GGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF--PGCAVVISHDRWFLDRIATHIL 513 (556)
T ss_pred hhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhCCEEE
Confidence 2 245566789999999999999999999999999999999999999999999985 3589999999999887 99999
Q ss_pred EEeC-CEEEE-ecChhHHhhc
Q 001580 872 LLDS-GRVLE-YDTPEELLSN 890 (1050)
Q Consensus 872 vl~~-G~i~~-~g~~~el~~~ 890 (1050)
+|++ |++.. .|+++++.+.
T Consensus 514 ~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 514 AFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred EEECCCeEEEecCCHHHHHHH
Confidence 9986 88874 6888877653
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-67 Score=633.07 Aligned_cols=480 Identities=22% Similarity=0.257 Sum_probs=329.9
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeEE-eCcEEEEecCCCCC
Q 001580 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-RGTVAYVPQVSWIF 118 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~-~~~i~~v~Q~~~l~ 118 (1050)
..|+++|++++|+. ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+... +..||||+|+|+++
T Consensus 3 ~~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~ 80 (552)
T TIGR03719 3 YIYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLD 80 (552)
T ss_pred EEEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCC
Confidence 46899999999962 3579999999999999999999999999999999999999998876542 34699999999886
Q ss_pred -cccHHHHhccCCCC------------------CH---------HHHHHHHHHhCcH-------HHHhcCCCCCcccccC
Q 001580 119 -NATVRDNILFGSAF------------------EP---------ARYEKAIDVTSLQ-------HDLDLLPGGDVTEIGE 163 (1050)
Q Consensus 119 -~~TV~eni~~g~~~------------------~~---------~~~~~~~~~~~l~-------~~~~~~~~g~~t~vg~ 163 (1050)
+.||+||+.++... .. .++...++.++.. ..++.+.- .....
T Consensus 81 ~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l---~~~~~ 157 (552)
T TIGR03719 81 PTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRC---PPWDA 157 (552)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCC---CcccC
Confidence 67999999875210 00 0111122222211 11222111 11244
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCC
Q 001580 164 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEG 242 (1050)
Q Consensus 164 ~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G 242 (1050)
...+|||||||||+|||||+.+|++|||||||++||+.++.++.+.+.+. +.|+|+||||++++.. ||++++|++|
T Consensus 158 ~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~~~~~~~~d~v~~l~~g 234 (552)
T TIGR03719 158 DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDRYFLDNVAGWILELDRG 234 (552)
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCHHHHHhhcCeEEEEECC
Confidence 56789999999999999999999999999999999999999999977654 3699999999999986 6999999999
Q ss_pred eEe-eccChhhhhcChHHHHHHHHHhhhhhhhhhhcccCcccccCCCCCCCCCCCCCCCCccccccccccccchhhhhhh
Q 001580 243 MVK-EEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEE 321 (1050)
Q Consensus 243 ~i~-~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (1050)
+++ +.|+++++.+.... .......
T Consensus 235 ~i~~~~g~~~~~~~~~~~--~~~~~~~----------------------------------------------------- 259 (552)
T TIGR03719 235 RGIPWEGNYSSWLEQKEK--RLEQEEK----------------------------------------------------- 259 (552)
T ss_pred EEEEecCCHHHHHHHHHH--HHHHHHH-----------------------------------------------------
Confidence 975 67887765421100 0000000
Q ss_pred hhcccccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHH
Q 001580 322 RETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLAN 401 (1050)
Q Consensus 322 ~~~~~~~~~~~~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 401 (1050)
.+
T Consensus 260 ------------~~------------------------------------------------------------------ 261 (552)
T TIGR03719 260 ------------EE------------------------------------------------------------------ 261 (552)
T ss_pred ------------HH------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 402 SYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVST 481 (1050)
Q Consensus 402 ~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (1050)
...
T Consensus 262 -----------------------------------------------~~~------------------------------ 264 (552)
T TIGR03719 262 -----------------------------------------------SAR------------------------------ 264 (552)
T ss_pred -----------------------------------------------HHH------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 482 MSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNM 561 (1050)
Q Consensus 482 ~~~~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (1050)
.++..+. .+++..... .... +.
T Consensus 265 -----------------------~~~~~~~------------~~~~~~~~~----~~~~--------------~~----- 286 (552)
T TIGR03719 265 -----------------------QKALKRE------------LEWVRSSPK----ARQA--------------KS----- 286 (552)
T ss_pred -----------------------HHHHHHH------------HHHHHhhhh----hHHH--------------HH-----
Confidence 0000000 000000000 0000 00
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001580 562 GANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYI 641 (1050)
Q Consensus 562 ~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~ 641 (1050)
.......++..+
T Consensus 287 ------------------------------------------------------------------~~~~~~~~~~~~-- 298 (552)
T TIGR03719 287 ------------------------------------------------------------------KARLARYEELLS-- 298 (552)
T ss_pred ------------------------------------------------------------------HHHHHHHHhhhh--
Confidence 000000000000
Q ss_pred cCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCc
Q 001580 642 ELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 721 (1050)
Q Consensus 642 ~~~~e~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~ 721 (1050)
..+...+.......+.........++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~ 376 (552)
T TIGR03719 299 QEFQKRNETAEIYIPPGPRLGDKVIEAENLSKGFGDK--LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDS 376 (552)
T ss_pred hcccccCCCceeecCCCCCCCCeEEEEeeEEEEECCe--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCC
Confidence 0000000000000000000112359999999999643 69999999999999999999999999999999999999999
Q ss_pred cEEEECCeecCCCChHHHhhheEEEcCCcc-ccc-ccHHHhcccCCC---CC--HHHHHHHHHHhcHHHHHHHccCCcch
Q 001580 722 GRILIDGFDIAKFGLMDLRKILGIIPQSPV-LFS-GTVRFNLDPFSE---HS--DADLWEALERAHLKDAIRRNSLGLDA 794 (1050)
Q Consensus 722 G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~-lf~-~tv~~nl~~~~~---~~--~~~~~~~l~~~~~~~~i~~~p~gl~t 794 (1050)
|+|.+++ + ..|||+||++. ++. .|+.+|+.+... .. +.+.. +.+..+ |+..
T Consensus 377 G~i~~~~-~----------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~---------~~l~~~--~l~~ 434 (552)
T TIGR03719 377 GTIKIGE-T----------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSR---------AYVGRF--NFKG 434 (552)
T ss_pred eEEEECC-c----------eEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHH---------HHHHhC--CCCh
Confidence 9999954 2 16999999973 564 499999875321 11 11122 234442 4432
Q ss_pred -hhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEE
Q 001580 795 -QVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILL 872 (1050)
Q Consensus 795 -~v~~~~~~LSgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~v 872 (1050)
.......+|||||||||+|||||+.+|++|||||||++||+.+...+.+.|+++ ++|||+|||+++++.. ||+|++
T Consensus 435 ~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~~viivsHd~~~~~~~~d~i~~ 512 (552)
T TIGR03719 435 SDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF--AGCAVVISHDRWFLDRIATHILA 512 (552)
T ss_pred hHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHhCCEEEE
Confidence 245556789999999999999999999999999999999999999999999986 3589999999999987 999999
Q ss_pred EeC-CEEE-EecChhHHhh
Q 001580 873 LDS-GRVL-EYDTPEELLS 889 (1050)
Q Consensus 873 l~~-G~i~-~~g~~~el~~ 889 (1050)
|++ |+++ ..|+++++.+
T Consensus 513 l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 513 FEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred EECCCeEEEeCCCHHHHHH
Confidence 996 6876 4477776643
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-67 Score=640.89 Aligned_cols=263 Identities=20% Similarity=0.250 Sum_probs=189.9
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheE
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 744 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 744 (1050)
.++++||+++|++. ++|+|+||+|.+|+++||+||||||||||+++|+|+++|++|+|.+ |.++ .||
T Consensus 319 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~ 385 (635)
T PRK11147 319 VFEMENVNYQIDGK--QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVA 385 (635)
T ss_pred eEEEeeeEEEECCe--EEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEE
Confidence 48999999999643 6999999999999999999999999999999999999999999998 4322 599
Q ss_pred EEcCCc-ccccc-cHHHhcccCCC-C--C--HHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHHHHHH
Q 001580 745 IIPQSP-VLFSG-TVRFNLDPFSE-H--S--DADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLSLSRA 816 (1050)
Q Consensus 745 ~v~Q~~-~lf~~-tv~~nl~~~~~-~--~--~~~~~~~l~~~~~~~~i~~~p~gl~-t~v~~~~~~LSgGq~qrl~lAra 816 (1050)
|++|++ .++.. ||.+|+..... . . ..+ +.+++..+ |+. .........|||||||||+||||
T Consensus 386 y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~---------~~~~l~~~--~l~~~~~~~~~~~LSgGekqRl~la~a 454 (635)
T PRK11147 386 YFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRH---------VLGYLQDF--LFHPKRAMTPVKALSGGERNRLLLARL 454 (635)
T ss_pred EEeCcccccCCCCCHHHHHHhhcccccccchHHH---------HHHHHHhc--CCCHHHHhChhhhCCHHHHHHHHHHHH
Confidence 999986 46554 99999864321 1 1 112 22333332 332 23445567899999999999999
Q ss_pred HccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEe-CCEEEEe-cChhHHhhcCCC
Q 001580 817 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLD-SGRVLEY-DTPEELLSNEGS 893 (1050)
Q Consensus 817 ll~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~-~G~i~~~-g~~~el~~~~~~ 893 (1050)
|+.+|++|||||||++||+.+...+.+.|++. ++|||+||||++++.. ||+|++|+ +|++..+ |++++++.....
T Consensus 455 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~~~~~ 532 (635)
T PRK11147 455 FLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQQQAQ 532 (635)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHHHHHH
Confidence 99999999999999999999999999999885 5699999999999977 99999998 8999875 899998641100
Q ss_pred hHHHHHHhh-cc-ch--HHH-HHHHhhcccchhhhhhhhhccchhhhHHHhhHHHHHhccchhhcc
Q 001580 894 SFSKMVQST-GA-AN--AQY-LRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVSL 954 (1050)
Q Consensus 894 ~~~~~~~~~-~~-~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 954 (1050)
.-....... .. .. ... ..... ......+..++.+.+|.++..++....++...++.+..|
T Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~e~~i~~le~~~~~~~~~~~~~~~~ 597 (635)
T PRK11147 533 YLALKQPAVKKKEEAAAPKAETVKRS-SKKLSYKLQRELEQLPQLLEDLEAEIEALQAQVADADFF 597 (635)
T ss_pred HHhhhhhhccccccccccccchhhhh-hhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence 000000000 00 00 000 00000 000011222235667888888888888888888766543
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-65 Score=617.39 Aligned_cols=463 Identities=24% Similarity=0.331 Sum_probs=354.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001580 390 LSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQL 469 (1050)
Q Consensus 390 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~ 469 (1050)
+.++..++.++..++....+.+...++|.++++++++.|..+|+++++|++++|+++|++.++..+...+..++..+..+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~ 141 (529)
T TIGR02868 62 FGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVG 141 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677778888888888899999999999999999999999999999999999999999988776666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHH
Q 001580 470 LSTFVLIGIVSTMSLWAIMPLLLL-FYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGK 548 (1050)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~lll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~ 548 (1050)
+..+++++.+.+...++++..+++ ++....+..+..+...+......+.+.+.+.|.++|+++||+|+.++++.+.+.+
T Consensus 142 ~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~ 221 (529)
T TIGR02868 142 SAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEA 221 (529)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHH
Confidence 666665555555444433332222 2222233333333333344455677889999999999999999999988877776
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 549 SMDKNIRYTLVNMGANRWLAIRLEIVGGLM---IWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLAS 625 (1050)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~ 625 (1050)
..+...+..........+......++..+. +++.+.+.+. .+..+. ..+..++.+...+..++..+.....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~g~~t~-----g~l~~~~~~~~~~~~~~~~l~~~~~ 295 (529)
T TIGR02868 222 ADRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPAVA-DGTLAP-----ATLAVLVLLPLAAFEAFAPLPAAAQ 295 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCh-----hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665554443333322222222222222111 1111222222 232221 1222333344456667777777778
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCC
Q 001580 626 LAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAG 705 (1050)
Q Consensus 626 ~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsG 705 (1050)
.......+.+|+.++++.+++.+... ........+..+.|+++||+|+|+++ +++|+|+||+|+|||++||+||||||
T Consensus 296 ~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~~~I~~~~vsf~Y~~~-~~vL~~isl~i~~G~~vaIvG~SGsG 373 (529)
T TIGR02868 296 ALTRVRAAAERIEEVTGAKGPRPEGV-VPAAGALGLGKPTLELRDLSFGYPGS-PPVLDGVSLDLPPGERVAILGPSGSG 373 (529)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcCCCC-CCCCcccCCCCceEEEEEEEEecCCC-CceeecceEEEcCCCEEEEECCCCCC
Confidence 88889999999999997765432111 10011112233569999999999754 36999999999999999999999999
Q ss_pred HHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEEEcCCcccccccHHHhcccCC-CCCHHHHHHHHHHhcHHHH
Q 001580 706 KSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDA 784 (1050)
Q Consensus 706 KSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~~~~~l~~~~~~~~ 784 (1050)
||||+++|+|+++|++|+|.+||+|++++ ..++|++|+||||+|.+|++||+|||.++. +.++++++++++.++++++
T Consensus 374 KSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~ 452 (529)
T TIGR02868 374 KSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADW 452 (529)
T ss_pred HHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999 999999999999999999999999999865 4689999999999999999
Q ss_pred HHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCc
Q 001580 785 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRL 861 (1050)
Q Consensus 785 i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~ 861 (1050)
+.++|+|+||.+|++|.+||||||||++||||++++|+|||||||||+||+++++.|++.|++..+++|+|+||||+
T Consensus 453 i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 453 LRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988899999999985
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-64 Score=613.20 Aligned_cols=545 Identities=20% Similarity=0.266 Sum_probs=394.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 345 VLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSI 424 (1050)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 424 (1050)
+++.+++.++...+....|..++..+|...... ....+..++.++.+...+..++..++......+...+++.++|+++
T Consensus 21 ~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l 99 (585)
T TIGR01192 21 VLLIVIANITLAAITIAEPILFGRIIDAISSKS-DVLPTLALWAGFGVFNTIAYVLVAREADRLAHGRRATLLTEAFGRI 99 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555666666666666655432211 1111222222223333444444455555555566667778999999
Q ss_pred HcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 425 LRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQST 504 (1050)
Q Consensus 425 l~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~~~~~~~~~~~~ 504 (1050)
+++|+.||+++++|++++|+++|++.+...+...+...+..++.++.++++++.+.+...++++.++++++.....+.+.
T Consensus 100 ~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~ 179 (585)
T TIGR01192 100 ISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAKLVMQR 179 (585)
T ss_pred HcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987776666555555555555545555555544443333333333333444444
Q ss_pred HHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHH
Q 001580 505 AREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRL---EIVGGLMIWL 581 (1050)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~ 581 (1050)
.++..+......+.+.+.+.|.++|+++||+|+.++...+.+.+..+...+..........+..... ..+..+++++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 259 (585)
T TIGR01192 180 TKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCILV 259 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555667788999999999999999999887776666655544333322221111111111 1112222222
Q ss_pred HHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCC
Q 001580 582 TATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP 661 (1050)
Q Consensus 582 ~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~ 661 (1050)
++.+.+. .+..+. +.+..++.++..+..++..+............+.+|+.++.+.+++... ........+
T Consensus 260 ~g~~~v~-~g~it~-----g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~---~~~~~~~~~ 330 (585)
T TIGR01192 260 IGTVLVI-KGELSV-----GEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREE---PADAPELPN 330 (585)
T ss_pred HHHHHHH-cCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---CccCCCCCC
Confidence 2333332 232221 1122233344445556666666667777788899999988876543211 111001111
Q ss_pred CCccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhh
Q 001580 662 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 741 (1050)
Q Consensus 662 ~~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~ 741 (1050)
..+.++++||+|+|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.++++..+|+
T Consensus 331 ~~~~i~~~~v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~ 409 (585)
T TIGR01192 331 VKGAVEFRHITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRK 409 (585)
T ss_pred CCCeEEEEEEEEECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHh
Confidence 23469999999999753 36899999999999999999999999999999999999999999999999999999999999
Q ss_pred heEEEcCCcccccccHHHhcccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccC
Q 001580 742 ILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 820 (1050)
Q Consensus 742 ~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~ 820 (1050)
+++|+||+|.+|++|+++||.++. ..++++++++++.+++++++.++|.|++|.+++++.+|||||||||+|||||+++
T Consensus 410 ~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~ 489 (585)
T TIGR01192 410 SIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKN 489 (585)
T ss_pred heEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999998764 4578899999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHH
Q 001580 821 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 900 (1050)
Q Consensus 821 p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~ 900 (1050)
|+|||||||||+||+++++.+++.|++..+++|+|+||||++++..||+|++|++|++++.|++++++++. +.|..++.
T Consensus 490 p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~y~~l~~ 568 (585)
T TIGR01192 490 APILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKD-GRFYKLLR 568 (585)
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCC-ChHHHHHH
Confidence 99999999999999999999999999887899999999999999889999999999999999999999864 57777765
Q ss_pred h
Q 001580 901 S 901 (1050)
Q Consensus 901 ~ 901 (1050)
.
T Consensus 569 ~ 569 (585)
T TIGR01192 569 R 569 (585)
T ss_pred h
Confidence 4
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-64 Score=617.45 Aligned_cols=547 Identities=24% Similarity=0.390 Sum_probs=409.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhccccccCCC-Chh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 345 VLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTH-GPL-FYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLH 422 (1050)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~-~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 422 (1050)
+.+.+++.++...+....+..+....|....... ... .+..+++++.+...+..+.+.++....+.+....+|..+++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~ 99 (576)
T TIGR02204 20 VLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFA 99 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666666666665554221111 111 12223334444556667788888888899999999999999
Q ss_pred HHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 423 SILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQ 502 (1050)
Q Consensus 423 ~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~~~~~~~~~~ 502 (1050)
++++.|..+|++.+.|++++|+++|++.++..+...+..++..+..++..+++++.+.+...++++..+++.+.....+.
T Consensus 100 ~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~ 179 (576)
T TIGR02204 100 HLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFG 179 (576)
T ss_pred HHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887766665656666666655555555555544443333333333334444
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHH
Q 001580 503 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIV---GGLMI 579 (1050)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~ 579 (1050)
+..+...+........+.+.+.|.++|+++||+++.++++...+.+..+..............+.......+ ..+++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (576)
T TIGR02204 180 RRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGV 259 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555667788899999999999999999988777776666654443332222222222222211 11122
Q ss_pred HHHHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCC
Q 001580 580 WLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPG 659 (1050)
Q Consensus 580 ~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~ 659 (1050)
++++.+.+. .+..+. +.+..+..+...+..++..+...+..+.....+.+|+.++++.+++.+..... ....
T Consensus 260 ~~~g~~~v~-~g~lt~-----g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~--~~~~ 331 (576)
T TIGR02204 260 LWVGAHDVI-AGKMSA-----GTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHP--KTLP 331 (576)
T ss_pred HHHHHHHHH-cCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCC--ccCC
Confidence 222222222 232221 12223334455566777778888888889999999999998766542211101 1111
Q ss_pred CCCCccEEEEEEEEEeCCCC-CCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHH
Q 001580 660 WPSSGSIKFEDVVLRYRPEL-PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD 738 (1050)
Q Consensus 660 ~~~~~~i~~~~v~~~y~~~~-~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~ 738 (1050)
++..+.|+++||+|+|+++. +++|+|+||+++|||+++|+|+||||||||+++|+|+++|++|+|++||.+++++++.+
T Consensus 332 ~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~ 411 (576)
T TIGR02204 332 VPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAE 411 (576)
T ss_pred cCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHH
Confidence 12235699999999997532 47999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhheEEEcCCcccccccHHHhcccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHH
Q 001580 739 LRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 817 (1050)
Q Consensus 739 ~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAral 817 (1050)
+|++|+|+||+|.+|++|+++||.++. +.++++++++++.+++.++++++|.|++|.++++|.+||||||||++||||+
T Consensus 412 ~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal 491 (576)
T TIGR02204 412 LRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAI 491 (576)
T ss_pred HHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999765 3578999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHH
Q 001580 818 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSK 897 (1050)
Q Consensus 818 l~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~ 897 (1050)
+++|++||||||||+||+.+++.+++.|++..+++|+|+||||++.+..||+|++|++|++++.|+|++++++ ++.|..
T Consensus 492 ~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~-~~~~~~ 570 (576)
T TIGR02204 492 LKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAK-GGLYAR 570 (576)
T ss_pred HhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHc-CChHHH
Confidence 9999999999999999999999999999998789999999999999999999999999999999999999875 456666
Q ss_pred HHH
Q 001580 898 MVQ 900 (1050)
Q Consensus 898 ~~~ 900 (1050)
++.
T Consensus 571 l~~ 573 (576)
T TIGR02204 571 LAR 573 (576)
T ss_pred HHh
Confidence 553
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-65 Score=617.64 Aligned_cols=504 Identities=21% Similarity=0.288 Sum_probs=379.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 001580 386 IYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQ 465 (1050)
Q Consensus 386 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~ 465 (1050)
+++++.++..++.++..++....+.+...++|..+++++++.|+.+|+++++|++++|+++|+..+...+...+..++..
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~ 120 (569)
T PRK10789 41 TMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDS 120 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34444455666777778888888899999999999999999999999999999999999999999986555444444444
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHH
Q 001580 466 VSQLLSTFVLI-GIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAD 544 (1050)
Q Consensus 466 ~~~~~~~~~~~-~~~~~~~~~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~ 544 (1050)
+...+..++++ ..+++...++++..+++.+.+...+.+..++..+......+.+.+.+.|.++|++++|+|+.++++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~ 200 (569)
T PRK10789 121 LVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSA 200 (569)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHH
Confidence 33333333222 23444333332222222233333333333333344444557788899999999999999999998877
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 545 INGKSMDKNIRYTLVNMGANRWLAIRLEI---VGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVL 621 (1050)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~ 621 (1050)
.+.+..+...+..........+....... +..++++.++.+.+. .+..+.. .+..++.+...+..++..+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~-~g~lt~g-----~l~a~~~~~~~~~~pl~~l~ 274 (569)
T PRK10789 201 LFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVV-NGSLTLG-----QLTSFVMYLGLMIWPMLALA 274 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcCHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 77665554443333222222222111111 111222222222222 2322211 11222333344555666666
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECC
Q 001580 622 RLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGR 701 (1050)
Q Consensus 622 ~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~ 701 (1050)
.....+.....+.+|+.++++.+++.+.. .... .+..+.|+++|++|+|++...++|+|+||+++||++++|+||
T Consensus 275 ~~~~~~~~~~~a~~ri~~ll~~~~~~~~~---~~~~--~~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~ 349 (569)
T PRK10789 275 WMFNIVERGSAAYSRIRAMLAEAPVVKDG---SEPV--PEGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGP 349 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccCC---CCCC--CCCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECC
Confidence 77777888889999999998765442111 0011 112356999999999975445799999999999999999999
Q ss_pred CCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEEEcCCcccccccHHHhcccCC-CCCHHHHHHHHHHhc
Q 001580 702 TGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAH 780 (1050)
Q Consensus 702 ~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~~~~~l~~~~ 780 (1050)
||||||||+++|+|+++|++|+|.+||.++.+++...+|++++|+||+|.+|++|+++||.++. +.++++++++++.++
T Consensus 350 sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~ 429 (569)
T PRK10789 350 TGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLAS 429 (569)
T ss_pred CCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999999998774 468899999999999
Q ss_pred HHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecC
Q 001580 781 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHR 860 (1050)
Q Consensus 781 ~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~ 860 (1050)
+++++.++|.|++|.+|++|.+||||||||++||||++++|+||||||||++||+++++.+.+.|++..+++|+|+||||
T Consensus 430 l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~ 509 (569)
T PRK10789 430 VHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHR 509 (569)
T ss_pred CHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998789999999999
Q ss_pred chhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHh
Q 001580 861 LNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 901 (1050)
Q Consensus 861 ~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~ 901 (1050)
++.+..||+|++|++|++++.|++++++++. +.|..++..
T Consensus 510 ~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~y~~l~~~ 549 (569)
T PRK10789 510 LSALTEASEILVMQHGHIAQRGNHDQLAQQS-GWYRDMYRY 549 (569)
T ss_pred hhHHHcCCEEEEEeCCEEEEecCHHHHHHcC-ChHHHHHHH
Confidence 9999999999999999999999999999764 577777654
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-64 Score=609.38 Aligned_cols=516 Identities=24% Similarity=0.298 Sum_probs=383.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhccccc-cCCC-C-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 347 ILLLCYFLTETLRVSSSTWLSYWTDQSS-LKTH-G-PLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHS 423 (1050)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~-~-~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 423 (1050)
+.+++.++...+....+..+....|... .... . ...+..++.++.++..++.+++.++....+.+...++|..++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 86 (529)
T TIGR02857 7 LLGLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAA 86 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555566666666555432 1111 1 12233344555666778888899999999999999999999999
Q ss_pred HHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 424 ILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQS 503 (1050)
Q Consensus 424 ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~~~~~~~~~~~ 503 (1050)
+++.|..+|++.++|++++|+++|+..++..+...+..++..+..++..+++++...+...++++..+++.......+.+
T Consensus 87 l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~ 166 (529)
T TIGR02857 87 VAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGW 166 (529)
T ss_pred HHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999877665555555555555555555555554333332222222222233333
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHH
Q 001580 504 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGL---MIW 580 (1050)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~ 580 (1050)
..+...+......+.+.+.+.|+++|+++||+|+.++++.+.+.+..+...+..........+......++..+ +++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (529)
T TIGR02857 167 AAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVA 246 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444556778899999999999999999988877777665554443333222222222222222222 111
Q ss_pred HHHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCC
Q 001580 581 LTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGW 660 (1050)
Q Consensus 581 ~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~ 660 (1050)
+++.+.+. .+..+. +.+..++.+...+..++..+............+.+|+.++++.+++... .. ..+ .
T Consensus 247 ~~~~~~~~-~g~~t~-----g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~---~~-~~~-~ 315 (529)
T TIGR02857 247 VYIGFRLL-AGDLDL-----ATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG---KA-PVT-A 315 (529)
T ss_pred HHHHHHHH-cCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC---Cc-CCC-C
Confidence 22222222 333221 1122233344455566666777777888899999999999875432211 10 111 1
Q ss_pred CCCccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHh
Q 001580 661 PSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 740 (1050)
Q Consensus 661 ~~~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r 740 (1050)
+..+.|+++||+|+|+++.+++|+|+||+|+|||++||+||||||||||+++|+|+++|++|+|.+||.|+++++..++|
T Consensus 316 ~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr 395 (529)
T TIGR02857 316 APAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWR 395 (529)
T ss_pred CCCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHH
Confidence 12346999999999976544799999999999999999999999999999999999999999999999999999999999
Q ss_pred hheEEEcCCcccccccHHHhcccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHcc
Q 001580 741 KILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 819 (1050)
Q Consensus 741 ~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~ 819 (1050)
++++||||+|.+|++|++|||.++. ..++++++++++.++++++++++|.|+||.+|++|.+||||||||++||||+++
T Consensus 396 ~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~ 475 (529)
T TIGR02857 396 DQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLR 475 (529)
T ss_pred hheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999998764 458899999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEE
Q 001580 820 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLL 873 (1050)
Q Consensus 820 ~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl 873 (1050)
+|+|||||||||+||+++++.+++.|++..+++|+|+||||++++..||+|++|
T Consensus 476 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 476 DAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999999999999987899999999999999999999985
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-66 Score=555.21 Aligned_cols=458 Identities=27% Similarity=0.446 Sum_probs=348.8
Q ss_pred CcEEEEeEEEEeCC-CCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC-----CCCee-----------
Q 001580 40 PAISIRNGYFSWDS-KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV-----SDASA----------- 102 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~-~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~-----~g~~~----------- 102 (1050)
+.++++|++..|.. .+.+.++++|||+|++||.+||||++|||||-..+.++|+++.. +|.+.
T Consensus 5 ~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se 84 (534)
T COG4172 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84 (534)
T ss_pred cceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCH
Confidence 56899999999963 24568999999999999999999999999999999999998641 12221
Q ss_pred ----EEeC-cEEEEecCCCC-Cc--ccHHHHh----ccCCCCC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCC
Q 001580 103 ----VIRG-TVAYVPQVSWI-FN--ATVRDNI----LFGSAFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV 166 (1050)
Q Consensus 103 ----~~~~-~i~~v~Q~~~l-~~--~TV~eni----~~g~~~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~ 166 (1050)
.++| +|++++|+|.- .| .||...| ..-.... .++..+.++..++.+--. .+....+
T Consensus 85 ~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~--------rl~~yPH 156 (534)
T COG4172 85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEK--------RLDAYPH 156 (534)
T ss_pred HHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhh--------hhhhCCc
Confidence 1233 59999999953 22 3555544 3322222 223334444555433211 2334457
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhh-cCEEEEEcCCeE
Q 001580 167 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMV 244 (1050)
Q Consensus 167 ~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i 244 (1050)
+|||||||||.||.||+.+|++||-||||++||......|.+.+.++.. .|.++++||||+..+.. +|||+||.+|++
T Consensus 157 eLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~i 236 (534)
T COG4172 157 ELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEI 236 (534)
T ss_pred ccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEE
Confidence 9999999999999999999999999999999999999999998877654 59999999999999987 699999999999
Q ss_pred eeccChhhhhcChH-HHHHHHHHhhhhhhhhhhcccCcccccCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhh
Q 001580 245 KEEGTFEDLSNNGE-LFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERE 323 (1050)
Q Consensus 245 ~~~g~~~~l~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (1050)
++.|+.++++..+. -|.+..-+
T Consensus 237 vE~~~t~~lF~~PqHpYTr~Ll~--------------------------------------------------------- 259 (534)
T COG4172 237 VETGTTETLFAAPQHPYTRKLLA--------------------------------------------------------- 259 (534)
T ss_pred eecCcHHHHhhCCCChHHHHHHh---------------------------------------------------------
Confidence 99988776653310 00000000
Q ss_pred cccccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 001580 324 TGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSY 403 (1050)
Q Consensus 324 ~~~~~~~~~~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~ 403 (1050)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 404 WLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMS 483 (1050)
Q Consensus 404 ~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (1050)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 484 LWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGA 563 (1050)
Q Consensus 484 ~~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (1050)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 001580 564 NRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIEL 643 (1050)
Q Consensus 564 ~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~ 643 (1050)
..
T Consensus 260 ------------------------------------------------------------------------------ae 261 (534)
T COG4172 260 ------------------------------------------------------------------------------AE 261 (534)
T ss_pred ------------------------------------------------------------------------------cC
Confidence 00
Q ss_pred CCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCC---------CCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHh
Q 001580 644 PSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE---------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF 714 (1050)
Q Consensus 644 ~~e~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~---------~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~ 714 (1050)
|...+ ++........++.+||.+.|+-+ ...++++|||++++||.+||||.||||||||-.+|+
T Consensus 262 P~g~~-------~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~all 334 (534)
T COG4172 262 PSGDP-------PPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALL 334 (534)
T ss_pred CCCCC-------CCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHH
Confidence 11000 00001112247778887777411 125899999999999999999999999999999999
Q ss_pred ccccCCccEEEECCeecCCCChHH---HhhheEEEcCCcc--ccc-ccHHHhccc----CC-CC----CHHHHHHHHHHh
Q 001580 715 RIVELERGRILIDGFDIAKFGLMD---LRKILGIIPQSPV--LFS-GTVRFNLDP----FS-EH----SDADLWEALERA 779 (1050)
Q Consensus 715 g~~~p~~G~i~~~g~~i~~~~~~~---~r~~i~~v~Q~~~--lf~-~tv~~nl~~----~~-~~----~~~~~~~~l~~~ 779 (1050)
++++++ |+|.++|.++...+.++ +|+++-+|+|||+ |-. .||.+-|.- .. .. .++++.++++.+
T Consensus 335 rL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EV 413 (534)
T COG4172 335 RLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEV 413 (534)
T ss_pred hhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHc
Confidence 999876 99999999999888776 5889999999996 332 377764431 11 11 245567777776
Q ss_pred cHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEe
Q 001580 780 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLII 857 (1050)
Q Consensus 780 ~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~v 857 (1050)
|++.-. .+..+..+|||||||++||||++-+|++++||||||+||..-...|.+.|+++. .+-+-++|
T Consensus 414 GLDp~~----------r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFI 483 (534)
T COG4172 414 GLDPAT----------RNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFI 483 (534)
T ss_pred CCChhH----------hhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 664322 234457899999999999999999999999999999999999999999999864 36799999
Q ss_pred ecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCChHHHH
Q 001580 858 AHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 898 (1050)
Q Consensus 858 tH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~ 898 (1050)
|||+..++. ||+|+||.+|+|+|+|+.+++.+++...|.+.
T Consensus 484 SHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~~~YT~~ 525 (534)
T COG4172 484 SHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTRA 525 (534)
T ss_pred eccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCCcHHHHH
Confidence 999999988 99999999999999999999999887777643
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-63 Score=644.74 Aligned_cols=564 Identities=19% Similarity=0.271 Sum_probs=417.3
Q ss_pred ccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 327 VSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLI 406 (1050)
Q Consensus 327 ~~~~~~~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 406 (1050)
+++..+++|...... +.+++.++|.++........+..+...++.... .+....+.+.+++++++.+++.+++.++..
T Consensus 45 ~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 122 (1466)
T PTZ00265 45 IPFFLPFKCLPASHR-KLLGVSFVCATISGGTLPFFVSVFGVIMKNMNL-GENVNDIIFSLVLIGIFQFILSFISSFCMD 122 (1466)
T ss_pred ccHHHHHhcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345445555433222 223344444444444444555555555443211 112223344556667778889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 407 ISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWA 486 (1050)
Q Consensus 407 ~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (1050)
..+.+...++|.++|++++++|+.||+.++.|+++++++.|+..+...+...+..++..+..++..++++++.+|...++
T Consensus 123 ~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv 202 (1466)
T PTZ00265 123 VVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLC 202 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999998888777788888777887777777777755554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001580 487 IMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRW 566 (1050)
Q Consensus 487 ~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (1050)
++.++++++++..++.+..+...+......+...+.+.|+++|+++||+|+.++++.+.+.+......+..........+
T Consensus 203 ~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~ 282 (1466)
T PTZ00265 203 ITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESL 282 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444445567888999999999999999999988888876665554443332222222
Q ss_pred H----HHHHHHHHHHHHHHHHHHHHHhc-------CccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 567 L----AIRLEIVGGLMIWLTATFAVVQN-------GSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVE 635 (1050)
Q Consensus 567 ~----~~~~~~~~~l~~~~~~~~~v~~~-------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 635 (1050)
. .+...+...+++|+++.+ +..+ +..+....++..++.++++ ..+..+......+..+..+.+
T Consensus 283 ~~~~~~~~~~~~~~l~~~~G~~l-v~~g~~~~~~~~~~t~g~v~~~~~~~l~~~-----~~l~~i~~~~~~~~~a~~a~~ 356 (1466)
T PTZ00265 283 HIGMINGFILASYAFGFWYGTRI-IISDLSNQQPNNDFHGGSVISILLGVLISM-----FMLTIILPNITEYMKSLEATN 356 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHcCCcccccccccchhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 1 111122222333333332 3322 1222222233333332222 122233344556677889999
Q ss_pred HHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCC-CCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHh
Q 001580 636 RVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPEL-PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF 714 (1050)
Q Consensus 636 R~~~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~-~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~ 714 (1050)
|+.++++.+++.+.. ..... .+..+.|+++||+|+|+.+. .++|+|+||+|++||++||+||||||||||+++|+
T Consensus 357 ri~~ii~~~~~~~~~-~~~~~---~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~ 432 (1466)
T PTZ00265 357 SLYEIINRKPLVENN-DDGKK---LKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIE 432 (1466)
T ss_pred HHHHHHcCCCCCCCC-CCCcc---CCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 999999866543211 11111 11123699999999997432 36999999999999999999999999999999999
Q ss_pred ccccCCccEEEE-CCeecCCCChHHHhhheEEEcCCcccccccHHHhcccCC----------------------------
Q 001580 715 RIVELERGRILI-DGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS---------------------------- 765 (1050)
Q Consensus 715 g~~~p~~G~i~~-~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---------------------------- 765 (1050)
|+|+|++|+|.+ ||.++.+++..++|++||||||+|.+|++||++||.++.
T Consensus 433 gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (1466)
T PTZ00265 433 RLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRN 512 (1466)
T ss_pred HhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccc
Confidence 999999999999 579999999999999999999999999999999997632
Q ss_pred ------------------------------CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001580 766 ------------------------------EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 815 (1050)
Q Consensus 766 ------------------------------~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAr 815 (1050)
..++++++++++.+++++++..+|.||+|.+|+.+.+|||||||||+|||
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIAR 592 (1466)
T PTZ00265 513 SCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIAR 592 (1466)
T ss_pred cccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHH
Confidence 13567899999999999999999999999999999999999999999999
Q ss_pred HHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhhcCEEEEEeCC-----------------
Q 001580 816 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSG----------------- 876 (1050)
Q Consensus 816 all~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~vl~~G----------------- 876 (1050)
||+++|+|||||||||+||+.+++.+++.|+++. +++|+|+||||+++++.||+|++|++|
T Consensus 593 All~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~ 672 (1466)
T PTZ00265 593 AIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTK 672 (1466)
T ss_pred HHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccc
Confidence 9999999999999999999999999999999875 479999999999999889999999986
Q ss_pred ------------------------------EEEEecChhHHhhcCCChHHHHHHhh
Q 001580 877 ------------------------------RVLEYDTPEELLSNEGSSFSKMVQST 902 (1050)
Q Consensus 877 ------------------------------~i~~~g~~~el~~~~~~~~~~~~~~~ 902 (1050)
+|+|+|+|+||+++..+.|..+++.+
T Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q 728 (1466)
T PTZ00265 673 DNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQ 728 (1466)
T ss_pred cccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhh
Confidence 59999999999986677899888653
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-62 Score=592.95 Aligned_cols=526 Identities=18% Similarity=0.214 Sum_probs=381.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhccccccCCCC-h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 346 LILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHG-P-LFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHS 423 (1050)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~-~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 423 (1050)
+..+++.++...+....|.++....|........ . ..+..+++++.+...++.+++.++....+.+....+|.+++++
T Consensus 9 ~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ 88 (544)
T TIGR01842 9 IIVGLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAA 88 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555566666666666543221111 1 1223334444556677788888888999999999999999999
Q ss_pred HHcCCchhhcccChhHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 424 ILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAV-FVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQ 502 (1050)
Q Consensus 424 ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~~~~~~~~~~ 502 (1050)
+++.|+. ..+...+++.+|++.+...+.. ....++..++.++.. ++++.+.+...++++..+++++.+..+..
T Consensus 89 ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~l~li~l~~~~l~~~i~~~~~ 162 (544)
T TIGR01842 89 SFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYL-LVCFLLHPWIGILALGGAVVLVGLALLNN 162 (544)
T ss_pred HhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 9999984 2356788999999999876554 233333333333322 23333333332222221122222222333
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHH
Q 001580 503 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRL---EIVGGLMI 579 (1050)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~ 579 (1050)
+..++..+......+...+.+.|.++|+++||+|+.++++.+.+.+..+...+................ ..+..+++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (544)
T TIGR01842 163 RATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLV 242 (544)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334445566778899999999999999999988877776665554433332222111111111 11222222
Q ss_pred HHHHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCC
Q 001580 580 WLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPG 659 (1050)
Q Consensus 580 ~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~ 659 (1050)
+.++.+.+. .+..+.. .+..++.+...+..++..+............+.+|+.++++.+++... ....
T Consensus 243 ~~~g~~l~~-~g~it~g-----~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~----~~~~-- 310 (544)
T TIGR01842 243 LGLGAYLAI-DGEITPG-----MMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP----AMPL-- 310 (544)
T ss_pred HHHHHHHHH-cCCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC----CCCC--
Confidence 222333232 3333321 122223344455667777777777888999999999999976554321 1111
Q ss_pred CCCCccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHH
Q 001580 660 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL 739 (1050)
Q Consensus 660 ~~~~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~ 739 (1050)
.+..+.++++||+|+|+++.+++|+|+||+++|||++||+||||||||||+++|+|+++|++|+|.+||.++.+++...+
T Consensus 311 ~~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~ 390 (544)
T TIGR01842 311 PEPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETF 390 (544)
T ss_pred CCCCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHH
Confidence 11234699999999997544579999999999999999999999999999999999999999999999999999999999
Q ss_pred hhheEEEcCCcccccccHHHhcccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHc
Q 001580 740 RKILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 818 (1050)
Q Consensus 740 r~~i~~v~Q~~~lf~~tv~~nl~~~~~-~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall 818 (1050)
|+.++||||+|.+|++|+++|+.++.+ .++++++++++.++++++++++|.|++|.+|++|.+||||||||++||||++
T Consensus 391 ~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall 470 (544)
T TIGR01842 391 GKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALY 470 (544)
T ss_pred hhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999986554 6889999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhh
Q 001580 819 RRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 889 (1050)
Q Consensus 819 ~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~ 889 (1050)
++|++|||||||++||+++++.+.+.|++.. +++|+|+|||+++.+..||+|++|++|++++.|+|+++++
T Consensus 471 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 471 GDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999999999999875 5799999999999988899999999999999999999875
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-63 Score=648.66 Aligned_cols=211 Identities=26% Similarity=0.393 Sum_probs=176.4
Q ss_pred cEEEEEEEEEeC--CCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhcccc---CCccEEEECCeecCCCChHHH
Q 001580 665 SIKFEDVVLRYR--PELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE---LERGRILIDGFDIAKFGLMDL 739 (1050)
Q Consensus 665 ~i~~~~v~~~y~--~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~---p~~G~i~~~g~~i~~~~~~~~ 739 (1050)
.++++||+++|+ ++.+++|+|||++++|||++||+||||||||||+++|+|..+ |++|+|.+||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 378999999995 223479999999999999999999999999999999999997 78899999999984 257
Q ss_pred hhheEEEcCCcccc-cccHHHhcccCC------CCCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHH
Q 001580 740 RKILGIIPQSPVLF-SGTVRFNLDPFS------EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 808 (1050)
Q Consensus 740 r~~i~~v~Q~~~lf-~~tv~~nl~~~~------~~~~~----~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~ 808 (1050)
|+.+|||||++.++ ..||+|||.+.. ..+++ .+.++++..++.+ -.++.+++.+.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMES-------YADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh-------hCCCeeCCCCCCCCHHHh
Confidence 88999999998655 569999997521 12222 2344444444432 346777777778999999
Q ss_pred HHHHHHHHHccCCC-EEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhh--hhcCEEEEEeCC-EEEEecC
Q 001580 809 QLLSLSRALLRRSK-ILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTI--IDCDRILLLDSG-RVLEYDT 883 (1050)
Q Consensus 809 qrl~lArall~~p~-illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~--~~~d~i~vl~~G-~i~~~g~ 883 (1050)
||++|||+|+.+|+ ||+|||||+|||+.+...+++.|+++. +|+|||+++|+++.. ..||++++|++| ++++.|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 999999999999999999999999874 579999999999973 459999999987 9999999
Q ss_pred hhH
Q 001580 884 PEE 886 (1050)
Q Consensus 884 ~~e 886 (1050)
+.+
T Consensus 988 ~~~ 990 (1394)
T TIGR00956 988 LGE 990 (1394)
T ss_pred ccc
Confidence 754
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-63 Score=609.08 Aligned_cols=200 Identities=19% Similarity=0.287 Sum_probs=161.8
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhhe
Q 001580 664 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 743 (1050)
Q Consensus 664 ~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i 743 (1050)
..++++||+++|+++ +++|+|+||+|.+|+++||+||||||||||+++|+|+++|++|+|.+++ +.+|
T Consensus 507 ~~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 507 PIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred ceEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 359999999999643 2599999999999999999999999999999999999999999999875 2469
Q ss_pred EEEcCCcccccccHHHhcc--c---CCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHc
Q 001580 744 GIIPQSPVLFSGTVRFNLD--P---FSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 818 (1050)
Q Consensus 744 ~~v~Q~~~lf~~tv~~nl~--~---~~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall 818 (1050)
||+||++. ...++.+|.. + +....++++.++++..++.+ ......+..|||||||||+||||++
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~----------~~~~~~~~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG----------NLALQPMYTLSGGQKSRVAFAKITF 643 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCCh----------HHhcCCccccCHHHHHHHHHHHHHh
Confidence 99999863 2223433321 1 11223445555555544431 1234455789999999999999999
Q ss_pred cCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEE-EecChhHHh
Q 001580 819 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVL-EYDTPEELL 888 (1050)
Q Consensus 819 ~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~-~~g~~~el~ 888 (1050)
.+|++|||||||++||+.+...+.+.|.+. ++|||+|||+++++.. ||++++|++|+++ ..|+++++.
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF--QGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 999999999999999999999999999874 4599999999999987 9999999999998 568888764
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-59 Score=570.46 Aligned_cols=481 Identities=17% Similarity=0.157 Sum_probs=347.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001580 387 YSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQV 466 (1050)
Q Consensus 387 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~ 466 (1050)
+.++.++.+++.+...++....+.+...++|..+++++++.|+.+|+++++|++++|+++|++.++..+.. ...++..+
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~ 137 (555)
T TIGR01194 59 FGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIAL 137 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHH
Confidence 33445566778888888889999999999999999999999999999999999999999999999987654 33444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHH--HHHH
Q 001580 467 SQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYD--RMAD 544 (1050)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~--~~~~ 544 (1050)
..++.++++++++.+...++++.++++.+.......+..+..........+.+.+.+.|.+.|++++|+|+.++ ...+
T Consensus 138 ~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~ 217 (555)
T TIGR01194 138 AIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHG 217 (555)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHH
Confidence 44444555555555544444333333322323323222233333334445678889999999999999999843 3333
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 545 INGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLA 624 (1050)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~ 624 (1050)
.+.+..+...+..................+..+...+...+... .+..+ ...+..++.+...+..++..+....
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t-----~g~l~a~~~~~~~l~~pi~~l~~~~ 291 (555)
T TIGR01194 218 AIQESANNIADLHIIEILIFIAAENFGQLLFFLLIGCALFAAAM-FASID-----AAAISAFVLALLYIKGPLEMLVSAL 291 (555)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCC-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34433333333222111111111111111111111000000000 11111 1122233344455667777788888
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCcccc---CCCCC--CCCCCCCccEEEEEEEEEeCCC---CCCceeeeeEEecCCcEE
Q 001580 625 SLAENSLNAVERVGNYIELPSEAPLVI---ESNRP--PPGWPSSGSIKFEDVVLRYRPE---LPPVLHGLSFTIPPSDKV 696 (1050)
Q Consensus 625 ~~~~~~~~a~~R~~~~~~~~~e~~~~~---~~~~~--~~~~~~~~~i~~~~v~~~y~~~---~~~~l~~vs~~i~~Ge~~ 696 (1050)
...+....+.+|+.++++.+++++... +.... .+.....+.|+++||+|+|++. .+++|+|+||++++||++
T Consensus 292 ~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~ 371 (555)
T TIGR01194 292 PILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIV 371 (555)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEE
Confidence 888999999999999976432211110 00000 0111123569999999999743 236999999999999999
Q ss_pred EEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEEEcCCcccccccHHHhcccCCCCCHHHHHHHH
Q 001580 697 GIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEAL 776 (1050)
Q Consensus 697 ~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~~~~~l 776 (1050)
||+||||||||||+++|+|+++|++|+|.+||.++.+++..++|++++||+|++.+|++|+++|+. ...+++++++++
T Consensus 372 aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~--~~~~~~~~~~~~ 449 (555)
T TIGR01194 372 FIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEG--EHASLDNAQQYL 449 (555)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccc--cchhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999963 345678899999
Q ss_pred HHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHH-H-cCCcEE
Q 001580 777 ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE-E-FKSCTM 854 (1050)
Q Consensus 777 ~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~-~-~~~~tv 854 (1050)
+.++++++++.+|.|++|. .+|||||||||+||||++++|+||||||||++||+++++.+++.+.+ . .+++|+
T Consensus 450 ~~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~ti 524 (555)
T TIGR01194 450 QRLEIADKVKIEDGGFSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTI 524 (555)
T ss_pred HHcCCchhhcccccccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 9999999999999999994 67999999999999999999999999999999999999999887643 3 368999
Q ss_pred EEeecCchhhhhcCEEEEEeCCEEEEe
Q 001580 855 LIIAHRLNTIIDCDRILLLDSGRVLEY 881 (1050)
Q Consensus 855 i~vtH~~~~~~~~d~i~vl~~G~i~~~ 881 (1050)
|+||||++.+..||+|++|++|++++.
T Consensus 525 iiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 525 IIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred EEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 999999999988999999999999874
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-62 Score=556.00 Aligned_cols=449 Identities=24% Similarity=0.354 Sum_probs=340.2
Q ss_pred CCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeEE-------------e
Q 001580 39 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------------R 105 (1050)
Q Consensus 39 ~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~-------------~ 105 (1050)
.+.++++|++++|+. .++|++|||++++||++||+|.||||||||+|+|+|.++|++|.+..- .
T Consensus 6 ~~ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~ 82 (500)
T COG1129 6 PPLLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALA 82 (500)
T ss_pred cceeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHh
Confidence 356899999999973 479999999999999999999999999999999999999999866431 1
Q ss_pred CcEEEEecCCCCC-cccHHHHhccCCCCC-------HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHH
Q 001580 106 GTVAYVPQVSWIF-NATVRDNILFGSAFE-------PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 177 (1050)
Q Consensus 106 ~~i~~v~Q~~~l~-~~TV~eni~~g~~~~-------~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~ 177 (1050)
..|+.|+|+..|+ +.||.|||.+|.... ..++.+..+ .+...+... . .......+||+||||-|+
T Consensus 83 ~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~--~~l~~lg~~----~-~~~~~v~~LsiaqrQ~Ve 155 (500)
T COG1129 83 AGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRAR--ELLARLGLD----I-DPDTLVGDLSIAQRQMVE 155 (500)
T ss_pred CCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHH--HHHHHcCCC----C-ChhhhhhhCCHHHHHHHH
Confidence 2499999999986 899999999986432 122221111 111111110 0 023445789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccCh-hhhhc
Q 001580 178 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTF-EDLSN 255 (1050)
Q Consensus 178 LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~-~~l~~ 255 (1050)
|||||..+++|+|||||||+|++...+.+|+.+.++..+|.++|+|||+++++.. ||||.||+||+.+.+++. +++..
T Consensus 156 IArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~~ 235 (500)
T COG1129 156 IARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSE 235 (500)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCCH
Confidence 9999999999999999999999999999999998888899999999999999875 799999999998864431 11100
Q ss_pred ChHHHHHHHHHhhhhhhhhhhcccCcccccCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhhcccccHHHHHHH
Q 001580 256 NGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRY 335 (1050)
Q Consensus 256 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 335 (1050)
.
T Consensus 236 ~------------------------------------------------------------------------------- 236 (500)
T COG1129 236 D------------------------------------------------------------------------------- 236 (500)
T ss_pred H-------------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 336 KDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKR 415 (1050)
Q Consensus 336 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (1050)
T Consensus 237 -------------------------------------------------------------------------------- 236 (500)
T COG1129 237 -------------------------------------------------------------------------------- 236 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 416 LHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFY 495 (1050)
Q Consensus 416 l~~~l~~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~~~ 495 (1050)
.+ +..+.
T Consensus 237 ----------------------------------~l-------v~~Mv-------------------------------- 243 (500)
T COG1129 237 ----------------------------------EL-------VRLMV-------------------------------- 243 (500)
T ss_pred ----------------------------------HH-------HHHhh--------------------------------
Confidence 00 00000
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001580 496 AAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVG 575 (1050)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (1050)
T Consensus 244 -------------------------------------------------------------------------------- 243 (500)
T COG1129 244 -------------------------------------------------------------------------------- 243 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCC
Q 001580 576 GLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNR 655 (1050)
Q Consensus 576 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~ 655 (1050)
+.. +.+. .|. + . ..
T Consensus 244 --------------Gr~--------------------------------------------~~~~--~~~--~-~--~~- 257 (500)
T COG1129 244 --------------GRE--------------------------------------------LEDL--FPE--P-P--EE- 257 (500)
T ss_pred --------------Ccc--------------------------------------------hhhh--ccc--c-c--cc-
Confidence 000 0000 000 0 0 00
Q ss_pred CCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCC
Q 001580 656 PPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG 735 (1050)
Q Consensus 656 ~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~ 735 (1050)
.+....++++|++.. ..++|+||++++||++||.|--|||+|-++++|.|..++.+|+|.++|+++.-.+
T Consensus 258 ----~~~~~~l~v~~l~~~------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~s 327 (500)
T COG1129 258 ----GIGEPVLEVRNLSGG------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRS 327 (500)
T ss_pred ----CCCCcEEEEecCCCC------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCC
Confidence 001123677777653 2589999999999999999999999999999999999999999999999998877
Q ss_pred hH-HHhhheEEEcCCcc---cc-cccHHHhcccC--CCCCHH-HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhH
Q 001580 736 LM-DLRKILGIIPQSPV---LF-SGTVRFNLDPF--SEHSDA-DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 807 (1050)
Q Consensus 736 ~~-~~r~~i~~v~Q~~~---lf-~~tv~~nl~~~--~~~~~~-~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq 807 (1050)
+. ..+..|+|||.|.- +| ..+|++|+... ...... -+....++..+.+++.++...-.. ......+||||+
T Consensus 328 p~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s-~~~~v~~LSGGN 406 (500)
T COG1129 328 PRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPS-PEQPIGTLSGGN 406 (500)
T ss_pred HHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCC-ccchhhcCCchh
Confidence 76 56778999999873 55 45999999643 111101 233444455566677765333211 224456799999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChh
Q 001580 808 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPE 885 (1050)
Q Consensus 808 ~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~ 885 (1050)
+||+.|||+|..+|+||||||||.|+|..+++.|++.|+++. +|.+||+||.+++++.. ||||+||.+|+++..=+.+
T Consensus 407 QQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~ 486 (500)
T COG1129 407 QQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDRE 486 (500)
T ss_pred hhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEeccc
Confidence 999999999999999999999999999999999999999976 58999999999999875 9999999999999864443
Q ss_pred H
Q 001580 886 E 886 (1050)
Q Consensus 886 e 886 (1050)
+
T Consensus 487 ~ 487 (500)
T COG1129 487 E 487 (500)
T ss_pred c
Confidence 3
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-62 Score=527.92 Aligned_cols=486 Identities=25% Similarity=0.382 Sum_probs=367.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 001580 403 YWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIV-ST 481 (1050)
Q Consensus 403 ~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 481 (1050)
.++...+..+...+--..|.|+.++++.|..+..+|.+..-+.....-++......+...+..++.+..+.++++.. .+
T Consensus 4 ~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~ 83 (497)
T COG5265 4 RLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGW 83 (497)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhccc
Confidence 34556667777788888999999999999988877765555444444444444444444444444444333333332 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Q 001580 482 MSLWAIMPLLLLFYAAYLYYQ-STAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVN 560 (1050)
Q Consensus 482 ~~~~~~~~lll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (1050)
+...+.+..+ ++|..+.+.. .-.-..++....+.+..++.-.+.+-+..++|.|+.|+.....+....+...+.....
T Consensus 84 ~f~~~t~vtv-~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~ 162 (497)
T COG5265 84 WFALTTLVTV-ILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKV 162 (497)
T ss_pred HHHHHHHHHH-HHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHH
Confidence 2222222222 2233332211 1122344555556677778888999999999999999999988888888777766655
Q ss_pred HHHhHHHHHHHHHHHHHHHHH---HHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 561 MGANRWLAIRLEIVGGLMIWL---TATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERV 637 (1050)
Q Consensus 561 ~~~~~~~~~~~~~~~~l~~~~---~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~ 637 (1050)
...-.|+.+.-..+....... .+...+ ..+..+. ..+...-.+..++..|+..+-.....+.+.....++.
T Consensus 163 ~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v-~~g~~Tv-----gD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~m 236 (497)
T COG5265 163 HVSLLVLNFGQTAIFSTGLRVMMTMSALGV-EEGQLTV-----GDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKM 236 (497)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhcHHHH-hhccCCc-----hhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHH
Confidence 544445544333222111111 111111 1122211 1122233455556666666666666777778888888
Q ss_pred HhhhcCCCCCccccCCCCCCCCC-CCCccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhcc
Q 001580 638 GNYIELPSEAPLVIESNRPPPGW-PSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI 716 (1050)
Q Consensus 638 ~~~~~~~~e~~~~~~~~~~~~~~-~~~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~ 716 (1050)
.++.+.+.+.. +....++.| -..+.+.|++|+|.|.+. +++|+++||++++|+++||||++|+||||++++|.++
T Consensus 237 fdLl~~~~~v~---d~pda~~L~~~~~g~v~F~~V~F~y~~~-r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRF 312 (497)
T COG5265 237 FDLLDVEAEVS---DAPDAPPLWPVRLGAVAFINVSFAYDPR-RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRF 312 (497)
T ss_pred HHhhccchhhc---cCCCCccccccccceEEEEEEEeecccc-chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHH
Confidence 88877655432 222223334 335679999999999866 4899999999999999999999999999999999999
Q ss_pred ccCCccEEEECCeecCCCChHHHhhheEEEcCCcccccccHHHhcccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchh
Q 001580 717 VELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQ 795 (1050)
Q Consensus 717 ~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~-~~~~~~~~~l~~~~~~~~i~~~p~gl~t~ 795 (1050)
|++++|.|.+||+|++......+|+.||+||||..||++|+..|+.++++ .+++++..+++.+.++++++.+|+||+|.
T Consensus 313 yD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~ 392 (497)
T COG5265 313 YDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTG 392 (497)
T ss_pred hCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcc
Confidence 99999999999999999999999999999999999999999999998765 68999999999999999999999999999
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeC
Q 001580 796 VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDS 875 (1050)
Q Consensus 796 v~~~~~~LSgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~ 875 (1050)
|||+|-.|||||||||+|||+++++|+||+|||+||+||..|++.|+..|++...++|.++|+||++++.+||.|+||++
T Consensus 393 VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~ 472 (497)
T COG5265 393 VGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDN 472 (497)
T ss_pred cchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecChhHHhhcCCChHHHHHH
Q 001580 876 GRVLEYDTPEELLSNEGSSFSKMVQ 900 (1050)
Q Consensus 876 G~i~~~g~~~el~~~~~~~~~~~~~ 900 (1050)
|+|+|.|+|+||+++ +|.|..||.
T Consensus 473 g~i~erg~h~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 473 GRIVERGTHEELLAA-GGLYAEMWR 496 (497)
T ss_pred CEEEecCcHHHHHHc-CChHHHHhc
Confidence 999999999999997 778998874
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-62 Score=587.32 Aligned_cols=191 Identities=21% Similarity=0.281 Sum_probs=160.3
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheE
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 744 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 744 (1050)
.++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++ ..++
T Consensus 340 ~l~~~~ls~~~~~---~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~ 403 (590)
T PRK13409 340 LVEYPDLTKKLGD---FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKIS 403 (590)
T ss_pred EEEEcceEEEECC---EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEE
Confidence 4899999999964 25999999999999999999999999999999999999999999986 1599
Q ss_pred EEcCCcccc-cccHHHhcccCCC-CC-HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 001580 745 IIPQSPVLF-SGTVRFNLDPFSE-HS-DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 821 (1050)
Q Consensus 745 ~v~Q~~~lf-~~tv~~nl~~~~~-~~-~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p 821 (1050)
|+||++.++ +.|+++|+.+... .. .....++++.. |+.........+|||||||||+|||||+.+|
T Consensus 404 y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l-----------~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p 472 (590)
T PRK13409 404 YKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPL-----------QLERLLDKNVKDLSGGELQRVAIAACLSRDA 472 (590)
T ss_pred EecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHC-----------CCHHHHhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 999998755 5599999865311 11 12233333333 4444455666789999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecC
Q 001580 822 KILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 883 (1050)
Q Consensus 822 ~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~ 883 (1050)
+||||||||++||+.++..+.+.|+++.+ ++|+|+||||++++.. |||+++|++ ++...|+
T Consensus 473 ~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 473 DLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 99999999999999999999999998743 7899999999999877 999999965 8877776
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-59 Score=609.66 Aligned_cols=211 Identities=25% Similarity=0.325 Sum_probs=171.6
Q ss_pred cEEEEEEEEEeCC-----------CCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccC--CccEEEECCeec
Q 001580 665 SIKFEDVVLRYRP-----------ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL--ERGRILIDGFDI 731 (1050)
Q Consensus 665 ~i~~~~v~~~y~~-----------~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p--~~G~i~~~g~~i 731 (1050)
.+.++||++..+. +...+|+|||++++||+++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 5899999998741 123699999999999999999999999999999999999774 689999999876
Q ss_pred CCCChHHHhhheEEEcCCcccccc-cHHHhcccCC------CCCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcC-
Q 001580 732 AKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFS------EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEA- 799 (1050)
Q Consensus 732 ~~~~~~~~r~~i~~v~Q~~~lf~~-tv~~nl~~~~------~~~~~----~~~~~l~~~~~~~~i~~~p~gl~t~v~~~- 799 (1050)
. ...+|+.+|||+|++.++.. ||+|||.+.. ..+.+ .+.+.++..++.+. .++.+|..
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~ 1016 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPG 1016 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCC
Confidence 4 24567789999999987765 9999996421 11222 24445555554432 23444432
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchh-h-hhcCEEEEEeC-
Q 001580 800 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT-I-IDCDRILLLDS- 875 (1050)
Q Consensus 800 ~~~LSgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~-~-~~~d~i~vl~~- 875 (1050)
...|||||||||+|||+|+.+|+||+|||||+|||+.+...+.+.|+++. .|+|||+++|+++. + +.||++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 25799999999999999999999999999999999999999999999865 47999999999984 4 45999999996
Q ss_pred CEEEEecChh
Q 001580 876 GRVLEYDTPE 885 (1050)
Q Consensus 876 G~i~~~g~~~ 885 (1050)
|+++..|++.
T Consensus 1097 G~~v~~G~~~ 1106 (1470)
T PLN03140 1097 GQVIYSGPLG 1106 (1470)
T ss_pred CEEEEECCcc
Confidence 8999999864
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-58 Score=608.58 Aligned_cols=470 Identities=20% Similarity=0.277 Sum_probs=347.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 406 IISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLW 485 (1050)
Q Consensus 406 ~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (1050)
...+.+....++..+|+|++++|..++.+.++|+++|++++|++.++.........+..+ +.++..++++.....+..+
T Consensus 366 ~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~l~~l~~~p-l~ii~~~~lL~~~lg~~~l 444 (1622)
T PLN03130 366 MRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQLHTLWSAP-FRIIIAMVLLYQQLGVASL 444 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 456667777888899999999999999999999999999999999998775433333333 3333222222221112112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001580 486 AIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANR 565 (1050)
Q Consensus 486 ~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (1050)
+.++++++++++..++.+..+...+..........+.+.|.++|+++||+|++++.+.+.+.+..+...+..........
T Consensus 445 ~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~ 524 (1622)
T PLN03130 445 IGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSA 524 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222223333333333333333344444556677889999999999999999999888877766554443333222222
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 001580 566 WLAIRLEIVGGLM-IWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELP 644 (1050)
Q Consensus 566 ~~~~~~~~~~~l~-~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~ 644 (1050)
+..+.......++ +..++.+.+ .++.++....| .++++...+..++..+......+..+..+.+|+.++++.+
T Consensus 525 ~~~~~~~~~~~~v~~~~fg~~~~-~~g~Lt~g~vf-----~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~ 598 (1622)
T PLN03130 525 FNSFILNSIPVLVTVVSFGVFTL-LGGDLTPARAF-----TSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAE 598 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hCCCCCHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 2222222221111 112222222 24444433222 2333444556667777777888888999999999998765
Q ss_pred CCCccccCCCCCCCCCCCCccEEEEEEEEEeCCC-CCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCc-c
Q 001580 645 SEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER-G 722 (1050)
Q Consensus 645 ~e~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~-G 722 (1050)
+..+. ...+ ..+..+.|+++|++|+|++. .+++|+|+||+|++|++++|+||+|||||||+++|+|+++|++ |
T Consensus 599 e~~~~---~~~~--~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG 673 (1622)
T PLN03130 599 ERVLL---PNPP--LEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDA 673 (1622)
T ss_pred ccccc---cCCc--ccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCc
Confidence 43211 0000 01122469999999999642 2479999999999999999999999999999999999999999 9
Q ss_pred EEEECCeecCCCChHHHhhheEEEcCCcccccccHHHhcccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCC
Q 001580 723 RILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 802 (1050)
Q Consensus 723 ~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~ 802 (1050)
+|.+ |.+|+||||+|++|++||||||.++.+.++++++++++.|++.++++.+|.|++|.+|++|.+
T Consensus 674 ~I~l-------------~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~ 740 (1622)
T PLN03130 674 SVVI-------------RGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVN 740 (1622)
T ss_pred eEEE-------------cCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCC
Confidence 9975 458999999999999999999999888889999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHH-HHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEe
Q 001580 803 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI-QKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEY 881 (1050)
Q Consensus 803 LSgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i-~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~ 881 (1050)
|||||||||+||||++++|+|||||||||+||+++++.+ .++++...+++|+|+|||+++.+..||+|++|++|+|++.
T Consensus 741 LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~ 820 (1622)
T PLN03130 741 ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEE 820 (1622)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999998876 5677777789999999999999999999999999999999
Q ss_pred cChhHHhhcCCChHHHHHHh
Q 001580 882 DTPEELLSNEGSSFSKMVQS 901 (1050)
Q Consensus 882 g~~~el~~~~~~~~~~~~~~ 901 (1050)
|+++|++++ ++.|..+...
T Consensus 821 Gt~~eL~~~-~~~~~~l~~~ 839 (1622)
T PLN03130 821 GTYEELSNN-GPLFQKLMEN 839 (1622)
T ss_pred CCHHHHHhc-chhHHHHHHh
Confidence 999999875 3466666543
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-58 Score=609.06 Aligned_cols=471 Identities=19% Similarity=0.240 Sum_probs=346.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 406 IISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLW 485 (1050)
Q Consensus 406 ~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (1050)
...+.+....++..+|+++++.|..++.+.+.|+++|++++|++.++..... +..++...+.++..++++.....+..+
T Consensus 366 ~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~~~-l~~l~~~p~~ii~~~~~l~~~lg~~~l 444 (1495)
T PLN03232 366 GRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIAEQ-LHGLWSAPFRIIVSMVLLYQQLGVASL 444 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4666777778888999999999999999999999999999999999987643 333333322332222222221111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001580 486 AIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANR 565 (1050)
Q Consensus 486 ~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (1050)
+.++++++++++..++.+......+..........+.+.|.++|+++||+|++++.+.+.+.+..+...+..........
T Consensus 445 ~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~ 524 (1495)
T PLN03232 445 FGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSA 524 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222222222222333333444444444555677889999999999999999998888777666554444333322222
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 001580 566 WLAIRLEIVGGLMI-WLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELP 644 (1050)
Q Consensus 566 ~~~~~~~~~~~l~~-~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~ 644 (1050)
+..+.......++. +..+.+.+. ++.++... +..+++++..+..++..+.........+..+.+|+.++++.+
T Consensus 525 ~~~~~~~~~~~~~~~~~fg~~~v~-~~~lt~g~-----vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~ 598 (1495)
T PLN03232 525 FNSFILNSIPVVVTLVSFGVFVLL-GGDLTPAR-----AFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSE 598 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCCCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 22222222111111 122222222 33333322 222334455566677777788888889999999999999765
Q ss_pred CCCccccCCCCCCCCCCCCccEEEEEEEEEeCCC-CCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccE
Q 001580 645 SEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 723 (1050)
Q Consensus 645 ~e~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~ 723 (1050)
++... ... +..+..+.|+++|++|+|++. .+++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|.
T Consensus 599 ~~~~~---~~~--~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~ 673 (1495)
T PLN03232 599 ERILA---QNP--PLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETS 673 (1495)
T ss_pred ccccc---ccC--CcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCC
Confidence 43211 000 011123469999999999742 347999999999999999999999999999999999999999987
Q ss_pred EEECCeecCCCChHHHhhheEEEcCCcccccccHHHhcccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCC
Q 001580 724 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENF 803 (1050)
Q Consensus 724 i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~L 803 (1050)
+. .+|++|+||||+|++|++||||||.++.+.++++++++++.|++.++++.+|.|++|.+||+|.+|
T Consensus 674 i~------------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~L 741 (1495)
T PLN03232 674 SV------------VIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNI 741 (1495)
T ss_pred EE------------EecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCccc
Confidence 63 256789999999999999999999998888899999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHH-HHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEec
Q 001580 804 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ-KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYD 882 (1050)
Q Consensus 804 SgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~-~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g 882 (1050)
||||||||+||||++++|+|||||||||+||+++++.+. ++++...+++|+|+|||+++.+..||+|++|++|++++.|
T Consensus 742 SGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~G 821 (1495)
T PLN03232 742 SGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEG 821 (1495)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEec
Confidence 999999999999999999999999999999999988775 5566666889999999999999999999999999999999
Q ss_pred ChhHHhhcCCChHHHHHHh
Q 001580 883 TPEELLSNEGSSFSKMVQS 901 (1050)
Q Consensus 883 ~~~el~~~~~~~~~~~~~~ 901 (1050)
+|+|++++ ++.|..++..
T Consensus 822 t~~eL~~~-~~~~~~l~~~ 839 (1495)
T PLN03232 822 TFAELSKS-GSLFKKLMEN 839 (1495)
T ss_pred CHHHHHhc-chhHHHHHHh
Confidence 99999875 3467666644
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-59 Score=522.56 Aligned_cols=453 Identities=24% Similarity=0.385 Sum_probs=341.8
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeEE-------------eC
Q 001580 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------------RG 106 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~-------------~~ 106 (1050)
+.++++|+++.|+ .-.+++||||+|++||++||+|+||+|||||+++|.|.++|++|.+.+- +.
T Consensus 3 ~~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~ 79 (501)
T COG3845 3 PALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79 (501)
T ss_pred ceEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHc
Confidence 4689999999998 3579999999999999999999999999999999999999999876541 22
Q ss_pred cEEEEecCCCCC-cccHHHHhccCCCC------CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHH
Q 001580 107 TVAYVPQVSWIF-NATVRDNILFGSAF------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 179 (1050)
Q Consensus 107 ~i~~v~Q~~~l~-~~TV~eni~~g~~~------~~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LA 179 (1050)
.||+|+|++.|+ +.||.|||.+|.+. +.....+.++.......+...| .+....||=|+||||.|-
T Consensus 80 GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp-------~~~V~dLsVG~qQRVEIl 152 (501)
T COG3845 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDP-------DAKVADLSVGEQQRVEIL 152 (501)
T ss_pred CCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCc-------cceeecCCcchhHHHHHH
Confidence 499999999997 78999999998642 2222222222222222233333 234468999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhhhcChH
Q 001580 180 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNGE 258 (1050)
Q Consensus 180 raL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 258 (1050)
+|||++|++|||||||+.|-|...+.+|+.+.++...|+|+|+|||.+.++.. |||+.||++|+++...+ .....
T Consensus 153 KaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~--~~~~~-- 228 (501)
T COG3845 153 KALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD--PVAET-- 228 (501)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec--CCCCC--
Confidence 99999999999999999999999999999998888899999999999999876 79999999999763211 00000
Q ss_pred HHHHHHHHhhhhhhhhhhcccCcccccCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhhcccccHHHHHHHHHH
Q 001580 259 LFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDA 338 (1050)
Q Consensus 259 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 338 (1050)
. .++
T Consensus 229 -----------------------------------------t-----------------~~e------------------ 232 (501)
T COG3845 229 -----------------------------------------T-----------------EEE------------------ 232 (501)
T ss_pred -----------------------------------------C-----------------HHH------------------
Confidence 0 000
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 339 LGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHD 418 (1050)
Q Consensus 339 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 418 (1050)
T Consensus 233 -------------------------------------------------------------------------------- 232 (501)
T COG3845 233 -------------------------------------------------------------------------------- 232 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 419 AMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAY 498 (1050)
Q Consensus 419 ~l~~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~~~~~~ 498 (1050)
+ ...+
T Consensus 233 --------------------------------l-------a~lM------------------------------------ 237 (501)
T COG3845 233 --------------------------------L-------AELM------------------------------------ 237 (501)
T ss_pred --------------------------------H-------HHHh------------------------------------
Confidence 0 0000
Q ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 001580 499 LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLM 578 (1050)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 578 (1050)
T Consensus 238 -------------------------------------------------------------------------------- 237 (501)
T COG3845 238 -------------------------------------------------------------------------------- 237 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCC
Q 001580 579 IWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPP 658 (1050)
Q Consensus 579 ~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~ 658 (1050)
.+.. +..+.. ..+
T Consensus 238 ----------vG~~------------------------------------------------v~~~~~---------~~~ 250 (501)
T COG3845 238 ----------VGRE------------------------------------------------VVLRVV---------KPP 250 (501)
T ss_pred ----------cCCc------------------------------------------------cccccc---------cCC
Confidence 0000 000000 011
Q ss_pred CCCCCccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeec-CCCChH
Q 001580 659 GWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI-AKFGLM 737 (1050)
Q Consensus 659 ~~~~~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i-~~~~~~ 737 (1050)
..|....++++|++..-+.+ .+.+++|||+|++||++||.|-.|-|-+.|+.+|+|+.+|.+|+|.++|+|+ ...++.
T Consensus 251 ~~pg~~vL~V~~L~v~~~~~-~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~ 329 (501)
T COG3845 251 STPGEVVLEVEDLSVKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPR 329 (501)
T ss_pred CCCCCeEEEEeeeEeecCCC-CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHH
Confidence 11223458999999976433 3689999999999999999999999999999999999999999999999997 677888
Q ss_pred HHhhh-eEEEcCCcc----cccccHHHhcccCCCC-----CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhH
Q 001580 738 DLRKI-LGIIPQSPV----LFSGTVRFNLDPFSEH-----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 807 (1050)
Q Consensus 738 ~~r~~-i~~v~Q~~~----lf~~tv~~nl~~~~~~-----~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq 807 (1050)
.+|+. ++|||.|.. ....|+.+|+.+.... ....+..-.-.....+.++++... ..-......+||||+
T Consensus 330 ~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr-~~~~~~~a~~LSGGN 408 (501)
T COG3845 330 ERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVR-APSPDAPARSLSGGN 408 (501)
T ss_pred HHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCcc-CCCCCcchhhcCCcc
Confidence 77665 999999983 4466999998543211 000011001111233445543221 011223346799999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChh
Q 001580 808 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPE 885 (1050)
Q Consensus 808 ~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~ 885 (1050)
+||+-+||-|.++|++||..+||.|||..+.+.|++.|.+.+ .|+.|++||-+++++.. ||||.||.+|+++....++
T Consensus 409 qQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~ 488 (501)
T COG3845 409 QQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPE 488 (501)
T ss_pred eehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecccccc
Confidence 999999999999999999999999999999999999998865 57899999999999877 9999999999999887776
Q ss_pred H
Q 001580 886 E 886 (1050)
Q Consensus 886 e 886 (1050)
+
T Consensus 489 ~ 489 (501)
T COG3845 489 E 489 (501)
T ss_pred c
Confidence 5
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-57 Score=564.07 Aligned_cols=527 Identities=20% Similarity=0.267 Sum_probs=395.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhccccccC---CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 349 LLCYFLTETLRVSSSTWLSYWTDQSSLK---THGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSIL 425 (1050)
Q Consensus 349 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll 425 (1050)
.++.++........|..+...++..... ......|...+.+..+...++.....+.....+.+....+-..+|+|.+
T Consensus 207 ~~~~~~~~~~~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~IY~K~L 286 (1381)
T KOG0054|consen 207 GIFLFLRDLAGFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISAIYRKAL 286 (1381)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHhhh
Confidence 3333344444555666655444332222 1123344444444455566666666677778888999999999999999
Q ss_pred cCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 426 RAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTA 505 (1050)
Q Consensus 426 ~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~~~~~~~~~~~~~ 505 (1050)
+++...-...+.|+++|.++.|++++++........+..++..++...++...+++..+..++.+++++ ++..+..+..
T Consensus 287 ~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~-p~n~~~a~~~ 365 (1381)
T KOG0054|consen 287 RLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLI-PLNSFLAKKI 365 (1381)
T ss_pred cCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 999999989999999999999999999998888888888877777777776666666666555444433 3333333333
Q ss_pred HHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001580 506 REVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATF 585 (1050)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 585 (1050)
...+.............++|.++|+++||.|.+|+.|.+...+..+...+.-........+..+.......++.++....
T Consensus 366 ~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~~tF~~ 445 (1381)
T KOG0054|consen 366 AKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVSVVTFVV 445 (1381)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334445567899999999999999999888777666554444333333222333332222222222222222
Q ss_pred HH-HhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCc
Q 001580 586 AV-VQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSG 664 (1050)
Q Consensus 586 ~v-~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 664 (1050)
.+ ..++..++..+|. .+++...+..++..++.......++.++++|+.+++..++..+...+. .+..+.+.
T Consensus 446 ~v~~~~~~lt~~~aF~-----slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~---~~~~~~~~ 517 (1381)
T KOG0054|consen 446 FVLLLGNLLTASTAFT-----SLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVER---SPDEAGEN 517 (1381)
T ss_pred HhhccCccccHhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcccccc---CCCCCCCc
Confidence 22 2334444444443 345555566677777777788888899999999999776554332221 11122344
Q ss_pred cEEEEEEEEEeCC-CCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhhe
Q 001580 665 SIKFEDVVLRYRP-ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 743 (1050)
Q Consensus 665 ~i~~~~v~~~y~~-~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i 743 (1050)
.++++|.+|++++ +..+.|+||||+|++|+.+||||+.|||||+|+.+|+|+++..+|+|.++| .+
T Consensus 518 ~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g-------------si 584 (1381)
T KOG0054|consen 518 AIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG-------------SV 584 (1381)
T ss_pred eEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC-------------eE
Confidence 6999999999975 334599999999999999999999999999999999999999999999998 39
Q ss_pred EEEcCCcccccccHHHhcccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 001580 744 GIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 823 (1050)
Q Consensus 744 ~~v~Q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~i 823 (1050)
+||||.|++|++||||||.|+.++.++++.+++++|.+...++.+|.|..|.+||+|.+|||||||||+||||++++++|
T Consensus 585 aYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adI 664 (1381)
T KOG0054|consen 585 AYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADI 664 (1381)
T ss_pred EEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCcCCCHHH-HHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHH
Q 001580 824 LVLDEATAAVDVRT-DALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 898 (1050)
Q Consensus 824 llLDEpts~LD~~~-~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~ 898 (1050)
+|||.|.|++|+.+ ++.+.++|+...+++|+|+|||.++++.+||.|++|++|+|.+.|+|+|+++. +..|..+
T Consensus 665 YLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~-~~~~~~l 739 (1381)
T KOG0054|consen 665 YLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKS-GGDFAEL 739 (1381)
T ss_pred EEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhc-chhHHHH
Confidence 99999999999976 55567888778899999999999999999999999999999999999999965 4456655
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-56 Score=540.60 Aligned_cols=464 Identities=16% Similarity=0.134 Sum_probs=321.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 395 VLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFV 474 (1050)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~ 474 (1050)
.++.++..++....+.+...++|..+++++++.|+.+|+++++|++++|+++|+..+...+.. +..++..++.++..++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~-l~~~~~~~~~~i~~~~ 140 (547)
T PRK10522 62 MAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVR-LPELVQGIILTLGSAA 140 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 456677888888889999999999999999999999999999999999999999998875443 3344444455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchH---HHHHHHHHHHHH
Q 001580 475 LIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAY---DRMADINGKSMD 551 (1050)
Q Consensus 475 ~~~~~~~~~~~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~---~~~~~~~~~~~~ 551 (1050)
+++.+++...+++++.+++.+++...+.+..+...+......+.+.+.+.|.++|+++++ ++.+ +++.+.+.+..+
T Consensus 141 ~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~ 219 (547)
T PRK10522 141 YLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQ 219 (547)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHH
Confidence 555555544444333333333333333333333333344556778889999999999995 4332 234444444333
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 552 KNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSL 631 (1050)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 631 (1050)
...+..................+..+ +++.+.+..+. .... -...++.+..+...+..++..+...........
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~ 293 (547)
T PRK10522 220 EYRHHIIRADTFHLSAVNWSNIMMLG---AIGLVFYMANS-LGWA--DTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQ 293 (547)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-hhcC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222111111111111111111100 11111111100 0000 001111222222334456777777777788889
Q ss_pred HHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHH
Q 001580 632 NAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLN 711 (1050)
Q Consensus 632 ~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~ 711 (1050)
.+.+|+.++.+.+.+.... ...+. +..+.++++||+|+|+++ +++|+|+||+|+|||++||+||||||||||++
T Consensus 294 ~a~~ri~~l~~~~~~~~~~--~~~~~---~~~~~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ 367 (547)
T PRK10522 294 VAFNKLNKLALAPYKAEFP--RPQAF---PDWQTLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTLAM 367 (547)
T ss_pred HHHHHHHHHhccccccccc--ccccc---CcCceEEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 9999999987554332110 11001 112469999999999743 36999999999999999999999999999999
Q ss_pred HHhccccCCccEEEECCeecCCCChHHHhhheEEEcCCcccccccHHHhcccCCCCCHHHHHHHHHHhcHHHHHHHccCC
Q 001580 712 TLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLG 791 (1050)
Q Consensus 712 ~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~~~~~~i~~~p~g 791 (1050)
+|+|+++|++|+|.+||.++.+.+...+|++|+|+||++.+|++|+++| ....+++++.++++.+++...+.. +.|
T Consensus 368 ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~ 443 (547)
T PRK10522 368 LLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDG 443 (547)
T ss_pred HHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-ccc
Confidence 9999999999999999999999999999999999999999999999998 223455566666666555444331 222
Q ss_pred cchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhhcCE
Q 001580 792 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDR 869 (1050)
Q Consensus 792 l~t~v~~~~~~LSgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~ 869 (1050)
. .+|.+||||||||++||||++++|+|||||||||+||+++++.+.+.+.+.. .++|+|+||||++.+..||+
T Consensus 444 ~-----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~ 518 (547)
T PRK10522 444 R-----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADR 518 (547)
T ss_pred C-----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCE
Confidence 1 1367999999999999999999999999999999999999999999987654 47999999999999999999
Q ss_pred EEEEeCCEEEEe
Q 001580 870 ILLLDSGRVLEY 881 (1050)
Q Consensus 870 i~vl~~G~i~~~ 881 (1050)
|++|++|++++.
T Consensus 519 i~~l~~G~i~e~ 530 (547)
T PRK10522 519 LLEMRNGQLSEL 530 (547)
T ss_pred EEEEECCEEEEe
Confidence 999999999987
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-57 Score=502.13 Aligned_cols=484 Identities=20% Similarity=0.262 Sum_probs=344.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001580 387 YSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQV 466 (1050)
Q Consensus 387 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~ 466 (1050)
...+.+..-++..++++++.+.+.+...++...+|...++.|..--..-.... .-.|++++..++...-...+...
T Consensus 69 al~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q----~LrDL~qvR~Fltg~g~~A~fDa 144 (580)
T COG4618 69 ALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQ----PLRDLDQVRQFLTGTGLTAFFDA 144 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhcCCCcccc----chhhHHHHHHHHcCCCcchhcCC
Confidence 34455667788899999999999999999999999988766665432221111 12566777665543211111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHH
Q 001580 467 SQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADIN 546 (1050)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~ 546 (1050)
...-..+.+++.+.++..++.+.-.++++.+.++-....++--+.......+...+...+.++..+|+++++..+..+.+
T Consensus 145 PW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW 224 (580)
T COG4618 145 PWMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRW 224 (580)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHH
Confidence 11111222333344444333332222222222222222222222223333445567778899999999998877666665
Q ss_pred HHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHHHH---HHHHHHH
Q 001580 547 GKSMDKNIR----YTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALN---ITSLLTA 619 (1050)
Q Consensus 547 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~---~~~~~~~ 619 (1050)
.+....... ..-.+..........-..+...+..+++ +.++ .+..+. |..++-.+. ...|+..
T Consensus 225 ~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA-~Lvi-~ge~t~--------G~mIA~SIl~gRaLaPid~ 294 (580)
T COG4618 225 GRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGA-WLVI-KGEITP--------GMMIAGSILSGRALAPIDL 294 (580)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcce-eeEE-cCcCCc--------chhhHHHHHhhhhhccHHH
Confidence 544443333 2222222221111111111112222222 2222 222222 222222222 2335555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEE
Q 001580 620 VLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIV 699 (1050)
Q Consensus 620 ~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~iv 699 (1050)
....|..+..+..+.+|+.+++...++.... .+.| ...+.+.++++++.=++..+++|+|+||.+.+||.+|||
T Consensus 295 aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~----m~LP--~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgII 368 (580)
T COG4618 295 AIANWKQFVAARQSYKRLNELLAELPAAAER----MPLP--APQGALSVERLTAAPPGQKKPILKGISFALQAGEALGII 368 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccccCC----CCCC--CCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEE
Confidence 5667777788889999999998754432211 1111 235779999999976666678999999999999999999
Q ss_pred CCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEEEcCCcccccccHHHhcccCC-CCCHHHHHHHHHH
Q 001580 700 GRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALER 778 (1050)
Q Consensus 700 G~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~~~~~l~~ 778 (1050)
||||||||||.|+|.|.++|.+|.|++||-|+..++++++-++|||+||+..||+|||+|||.-+. +.+++.+.++++.
T Consensus 369 GPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~l 448 (580)
T COG4618 369 GPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARL 448 (580)
T ss_pred CCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999997554 6677889999999
Q ss_pred hcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEe
Q 001580 779 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLII 857 (1050)
Q Consensus 779 ~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~v 857 (1050)
++.++.|.++|+||||.+|+.|..|||||||||+|||||+.+|.+++||||-|+||.+-|+.+.++|.+.+ +|+|+|+|
T Consensus 449 AgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvvi 528 (580)
T COG4618 449 AGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVI 528 (580)
T ss_pred cChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999998865 68999999
Q ss_pred ecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001580 858 AHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 890 (1050)
Q Consensus 858 tH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 890 (1050)
|||.+.+..+|+|++|++|++..+|+.+|++++
T Consensus 529 aHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 529 AHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred ecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 999999999999999999999999999999875
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-54 Score=573.54 Aligned_cols=529 Identities=18% Similarity=0.253 Sum_probs=370.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhccccccCCCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 349 LLCYFLTETLRVSSSTWLSYWTDQSSLKTHG---PLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSIL 425 (1050)
Q Consensus 349 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll 425 (1050)
+++.++...+....|..+...++........ ...+...++++.++..++.....+.....+.+....++..+|+|++
T Consensus 323 ~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L 402 (1522)
T TIGR00957 323 FCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKAL 402 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555566666655544322111111 1122223333333444444444555677888889999999999999
Q ss_pred cCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 426 RAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGI-VSTMSLWAIMPLLLLFYAAYLYYQST 504 (1050)
Q Consensus 426 ~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~lll~~~~~~~~~~~~ 504 (1050)
++|..++++.+.|+++|+++.|+..+....... ..++...+.++..++++.. +++..+..+ .++++++++.....+.
T Consensus 403 ~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~-~~~~~~~~~i~~~~~ll~~~~g~~~l~~l-~~~~~~~~~~~~~~~~ 480 (1522)
T TIGR00957 403 VITNSARKSSTVGEIVNLMSVDAQRFMDLATYI-NMIWSAPLQVILALYFLWLNLGPSVLAGV-AVMVLMVPLNAVMAMK 480 (1522)
T ss_pred hCChhhcCCCCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998755433 3333333333333322222 222222222 2222223333333333
Q ss_pred HHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HH
Q 001580 505 AREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWL-TA 583 (1050)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~ 583 (1050)
.+..++..........+.+.|.++|+++||+|++++.+.+.+.+..+...+..........+..+.......++.++ ++
T Consensus 481 ~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 560 (1522)
T TIGR00957 481 TKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFA 560 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444556668899999999999999999988877776655544433322222222221111111111111 11
Q ss_pred HHHHHh-cCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCC
Q 001580 584 TFAVVQ-NGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPS 662 (1050)
Q Consensus 584 ~~~v~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~ 662 (1050)
.+.+.. ++.++...+|.+ ++++..+..++..+......+..+..+.+|+.++++.+++.+...+.....+ ..
T Consensus 561 ~~~~~~~~~~l~~~~~f~~-----l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~--~~ 633 (1522)
T TIGR00957 561 VYVTVDENNILDAEKAFVS-----LALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKP--GE 633 (1522)
T ss_pred HHHHhcCCCCcCHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCC--CC
Confidence 222222 223333322222 2333445567777888888889999999999999976644321111000000 11
Q ss_pred CccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhh
Q 001580 663 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 742 (1050)
Q Consensus 663 ~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~ 742 (1050)
.+.++++|++|+|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 634 ~~~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~ 700 (1522)
T TIGR00957 634 GNSITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------S 700 (1522)
T ss_pred CCcEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------E
Confidence 236999999999975445799999999999999999999999999999999999999999999997 5
Q ss_pred eEEEcCCcccccccHHHhcccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 001580 743 LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 822 (1050)
Q Consensus 743 i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~ 822 (1050)
|+||||+|++|++||++||.++.+.+++++.++++.|++.+.+..+|.|++|.+|++|.+||||||||++||||++++|+
T Consensus 701 i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~ 780 (1522)
T TIGR00957 701 VAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD 780 (1522)
T ss_pred EEEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999876667778889999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHHHHH---HcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHH
Q 001580 823 ILVLDEATAAVDVRTDALIQKTIRE---EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 899 (1050)
Q Consensus 823 illLDEpts~LD~~~~~~i~~~l~~---~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~ 899 (1050)
|+|||||||+||+.+++.+.+.+.+ ..+++|+|+|||+++.+..||+|++|++|++++.|+++++.++. +.|..+.
T Consensus 781 illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~-~~~~~l~ 859 (1522)
T TIGR00957 781 IYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRD-GAFAEFL 859 (1522)
T ss_pred EEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcc-hhHHHHH
Confidence 9999999999999999999998863 44689999999999999999999999999999999999998753 4566655
Q ss_pred H
Q 001580 900 Q 900 (1050)
Q Consensus 900 ~ 900 (1050)
.
T Consensus 860 ~ 860 (1522)
T TIGR00957 860 R 860 (1522)
T ss_pred H
Confidence 4
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-52 Score=551.88 Aligned_cols=483 Identities=18% Similarity=0.260 Sum_probs=352.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001580 387 YSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQV 466 (1050)
Q Consensus 387 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~ 466 (1050)
++++.++..++.....+.....+.+....+...+|+|+++++...+++.++|+++|++++|+..+...+......+..++
T Consensus 128 ~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi 207 (1490)
T TIGR01271 128 LCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWIAPL 207 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666667777778888888889999999999999999999999999999999999987766554444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHH
Q 001580 467 SQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADIN 546 (1050)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~ 546 (1050)
..++..+++...+++..++.++.+++ ++++..+..+.....++.......+....+.|.++|+++||.|++++.+.+.+
T Consensus 208 ~i~~~~~lL~~~~G~~~l~~l~v~~~-~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i 286 (1490)
T TIGR01271 208 QVILLMGLIWELLEVNGFCGLGFLIL-LALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKII 286 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHH
Confidence 34444444434444444333333333 33333333333344444444555667788999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 001580 547 GKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMI-WLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLL-TAVLRLA 624 (1050)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~-~~~~~~~ 624 (1050)
.+..+...+..........+..........++. ..++.+.+. ++ .+....|+. ++++..+..++ ..++...
T Consensus 287 ~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~y~~~-~~-~~~~~~ft~-----lal~~lL~~~l~~~lp~~~ 359 (1490)
T TIGR01271 287 KNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVFLSVVPYALI-KG-IILRRIFTT-----ISYCIVLRMTVTRQFPGAI 359 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CC-CcHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 766665544433322222222211111111111 111122222 11 222222221 23333333343 4567777
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCC--------------------------
Q 001580 625 SLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE-------------------------- 678 (1050)
Q Consensus 625 ~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-------------------------- 678 (1050)
..+..+..+++|+.+++..++..+... . .....++++|++|.|+..
T Consensus 360 ~~~~~a~~s~~RI~~fL~~~e~~~~~~--~------~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (1490)
T TIGR01271 360 QTWYDSLGAITKIQDFLCKEEYKTLEY--N------LTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFF 431 (1490)
T ss_pred HHHHHHHHHHHHHHHHhcCcccccccc--c------CCCCceEEecceEecCCccccccccccccccccccccccccccc
Confidence 778888999999999997654321100 0 012247888888888421
Q ss_pred ------CCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEEEcCCccc
Q 001580 679 ------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVL 752 (1050)
Q Consensus 679 ------~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l 752 (1050)
.+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| +|+||||+|++
T Consensus 432 ~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l 498 (1490)
T TIGR01271 432 SNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWI 498 (1490)
T ss_pred cccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCcc
Confidence 13589999999999999999999999999999999999999999999997 49999999999
Q ss_pred ccccHHHhcccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcC
Q 001580 753 FSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 832 (1050)
Q Consensus 753 f~~tv~~nl~~~~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~illLDEpts~ 832 (1050)
|++||++||.++....++++.++++.|++.+.++.+|.|++|.+|++|.+|||||||||+||||++++|+||||||||++
T Consensus 499 ~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~sa 578 (1490)
T TIGR01271 499 MPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTH 578 (1490)
T ss_pred CCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 99999999987665666678888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHH-HHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHH
Q 001580 833 VDVRTDALIQK-TIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 899 (1050)
Q Consensus 833 LD~~~~~~i~~-~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~ 899 (1050)
||+.+.+.+.+ ++.+..+++|+|+|||+++.+..||+|++|++|++++.|+++++.+.. ..|....
T Consensus 579 LD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~~-~~~~~~~ 645 (1490)
T TIGR01271 579 LDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKR-PDFSSLL 645 (1490)
T ss_pred CCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhcC-hHHHHHH
Confidence 99999999987 567776799999999999999889999999999999999999998753 3444433
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-53 Score=516.67 Aligned_cols=509 Identities=15% Similarity=0.141 Sum_probs=360.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhccccccCCCChh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 345 VLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPL-----FYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDA 419 (1050)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 419 (1050)
+++.+++.++...+....+.+.....+.......... .+.++++++++...+..++..++......+...+++..
T Consensus 98 l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~ 177 (659)
T TIGR00954 98 LILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLYSK 177 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555556666667676666554332111111 11222233334455555666666666667777778888
Q ss_pred HHHHHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 001580 420 MLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGI-VSTMSLWAIMPLLLLFYAAY 498 (1050)
Q Consensus 420 l~~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~lll~~~~~~ 498 (1050)
.+++....+..+|++ ++|++.+|+++|++.+...+...+..++..++.++...+.+.. ..+...++++.++++.+.+.
T Consensus 178 ~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i~ 256 (659)
T TIGR00954 178 YLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVVL 256 (659)
T ss_pred HhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 888877888888886 7899999999999999988877777777777666655544443 44444444444444444444
Q ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---
Q 001580 499 LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVG--- 575 (1050)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 575 (1050)
.++.+......+......+.+.+...|.++|+++|++|+.++...+.+.+..+...+..........+......++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 336 (659)
T TIGR00954 257 TKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKYT 336 (659)
T ss_pred HHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 55566666666666677788899999999999999999999887777666666555444443333333333333322
Q ss_pred -HHHHHHHHHH-HHHhc----CccchhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 001580 576 -GLMIWLTATF-AVVQN----GSAENQEAFASTMGLLLSY---ALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSE 646 (1050)
Q Consensus 576 -~l~~~~~~~~-~v~~~----~~~~~~~~~~~~~g~~l~~---~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e 646 (1050)
..+.++++.. .+... +..+. ...++.++.+ +..+..++..+......++....+.+|+.++++.+++
T Consensus 337 ~~~~~~~~~g~~~~~~~~~~~g~~t~----g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~ 412 (659)
T TIGR00954 337 WSAVGLVAVSIPIFDKTHPAFLEMSE----EELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDD 412 (659)
T ss_pred HHHHHHHHHHHHHHhcccccccccCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222 22211 22211 1122222322 3445667777777778888899999999999875332
Q ss_pred Cc-------cccC--CC----C----C---CCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCH
Q 001580 647 AP-------LVIE--SN----R----P---PPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGK 706 (1050)
Q Consensus 647 ~~-------~~~~--~~----~----~---~~~~~~~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGK 706 (1050)
.. ...+ .. . . .......+.|+++||+|.|+++ +++|+|+||+|++||++||+|||||||
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~isl~i~~Ge~~~IvG~nGsGK 491 (659)
T TIGR00954 413 VKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESLSFEVPSGNHLLICGPNGCGK 491 (659)
T ss_pred HhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-CeeeecceEEECCCCEEEEECCCCCCH
Confidence 10 0000 00 0 0 0000123469999999999643 369999999999999999999999999
Q ss_pred HHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEEEcCCcccccccHHHhcccCC--------CCCHHHHHHHHHH
Q 001580 707 SSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS--------EHSDADLWEALER 778 (1050)
Q Consensus 707 STll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~--------~~~~~~~~~~l~~ 778 (1050)
|||+++|+|+++|++|+|.+++ |++++||||+|.+|++|+++|+.+.. ..+++++.++++.
T Consensus 492 STLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~ 560 (659)
T TIGR00954 492 SSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDN 560 (659)
T ss_pred HHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHH
Confidence 9999999999999999998863 56899999999999999999997532 2457788999999
Q ss_pred hcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEee
Q 001580 779 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIA 858 (1050)
Q Consensus 779 ~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vt 858 (1050)
+++.+++++ |.|++|..+ .+.+||||||||++||||++++|++|||||||++||+++++.+++.+++ .++|+|+||
T Consensus 561 ~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~--~~~tvI~is 636 (659)
T TIGR00954 561 VQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE--FGITLFSVS 636 (659)
T ss_pred cCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH--cCCEEEEEe
Confidence 999999988 999999876 4678999999999999999999999999999999999999999999987 489999999
Q ss_pred cCchhhhhcCEEEEEe
Q 001580 859 HRLNTIIDCDRILLLD 874 (1050)
Q Consensus 859 H~~~~~~~~d~i~vl~ 874 (1050)
||++++..||++++|+
T Consensus 637 H~~~~~~~~d~il~l~ 652 (659)
T TIGR00954 637 HRKSLWKYHEYLLYMD 652 (659)
T ss_pred CchHHHHhCCEEEEEe
Confidence 9999998899999997
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-51 Score=535.58 Aligned_cols=532 Identities=18% Similarity=0.230 Sum_probs=371.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhccccccCCCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 347 ILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHG---PLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHS 423 (1050)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 423 (1050)
+.+++.++...+....|..+..+.+........ ...+...+++..++..++.....+.....+.+....+...+|+|
T Consensus 248 ~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K 327 (1560)
T PTZ00243 248 WQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLFLTQLIQSVCLHRFYYISIRCGLQYRSALNALIFEK 327 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555556665555443321111111 11122223333444555555666777778888888999999999
Q ss_pred HHcCCchhhc--ccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 424 ILRAPMVFFH--TNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYY 501 (1050)
Q Consensus 424 ll~~p~~ff~--~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~~~~~~~~~ 501 (1050)
+++.+...+. +.+.|+++|.++.|++.+...+......+..++..+++.+++...+++..++.++.++++ +++..+.
T Consensus 328 ~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~li~~~~lL~~~lG~~al~gv~vl~v~-~pl~~~~ 406 (1560)
T PTZ00243 328 CFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVT-LPLNGAI 406 (1560)
T ss_pred HHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHH
Confidence 9999988876 568999999999999999998866665555555445545555555555555444444333 3333333
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001580 502 QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWL 581 (1050)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 581 (1050)
.+.....++..............|.++|+++||.+++|+.+.+.+.+..+...+..........+..+.......++..+
T Consensus 407 ~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~~~~~~~~p~l~~~~ 486 (1560)
T PTZ00243 407 MKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATSFVNNATPTLMIAV 486 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444555667889999999999999999998888877666555443333333333333222222222211
Q ss_pred -HHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccc---c-C----
Q 001580 582 -TATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLV---I-E---- 652 (1050)
Q Consensus 582 -~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~---~-~---- 652 (1050)
++.+.+ .++.++....|+ .++++..+..++..++.....+.....+++|+.++++.++..+.. . +
T Consensus 487 ~f~~y~~-~g~~Lt~~~vft-----~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~ 560 (1560)
T PTZ00243 487 VFTVYYL-LGHELTPEVVFP-----TIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQDMEEYWRE 560 (1560)
T ss_pred HHHHHHH-hCCCCCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccchhhccc
Confidence 122222 244555444332 344445556677777788888888999999999999765421000 0 0
Q ss_pred --------C-----CC-------C---------------------------CCCCCCCccEEEEEEEEEeC---------
Q 001580 653 --------S-----NR-------P---------------------------PPGWPSSGSIKFEDVVLRYR--------- 676 (1050)
Q Consensus 653 --------~-----~~-------~---------------------------~~~~~~~~~i~~~~v~~~y~--------- 676 (1050)
. .. + +..+...+.+.++|++++++
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (1560)
T PTZ00243 561 QREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSASRHIVE 640 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccccccccccccccccccccc
Confidence 0 00 0 00001112466667666531
Q ss_pred -----------------------------CCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEEC
Q 001580 677 -----------------------------PELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 727 (1050)
Q Consensus 677 -----------------------------~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~ 727 (1050)
.+.+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++
T Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~ 720 (1560)
T PTZ00243 641 GGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE 720 (1560)
T ss_pred ccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC
Confidence 112358999999999999999999999999999999999999999999864
Q ss_pred CeecCCCChHHHhhheEEEcCCcccccccHHHhcccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhH
Q 001580 728 GFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 807 (1050)
Q Consensus 728 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq 807 (1050)
++|+|+||+|++|++||++||.++.....+++.++++.+++.+.++.+|.|++|.+++++.+|||||
T Consensus 721 -------------~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQ 787 (1560)
T PTZ00243 721 -------------RSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQ 787 (1560)
T ss_pred -------------CeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHH
Confidence 4799999999999999999999876555567888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHH-HHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhH
Q 001580 808 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK-TIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEE 886 (1050)
Q Consensus 808 ~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~-~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~e 886 (1050)
||||+||||++.+|+||||||||++||+.+.+.+.+ ++....+++|+|+|||+++.+..||+|++|++|++++.|++++
T Consensus 788 kqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~ 867 (1560)
T PTZ00243 788 KARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSAD 867 (1560)
T ss_pred HHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 999999999999999999999999999998777765 4555557899999999999998899999999999999999999
Q ss_pred HhhcCCChHHHHHH
Q 001580 887 LLSNEGSSFSKMVQ 900 (1050)
Q Consensus 887 l~~~~~~~~~~~~~ 900 (1050)
+++. +.|..+..
T Consensus 868 l~~~--~~~~~~~~ 879 (1560)
T PTZ00243 868 FMRT--SLYATLAA 879 (1560)
T ss_pred HHhC--hHHHHHHH
Confidence 9864 24555443
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-54 Score=477.81 Aligned_cols=200 Identities=22% Similarity=0.320 Sum_probs=166.1
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheE
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 744 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 744 (1050)
.+.+.||+|.|.++. .++++++|-|.+++++++|||||+|||||+++++|.+.|+.|.|.-.-. .+++
T Consensus 389 vi~~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----------~~~~ 456 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NKLP 456 (614)
T ss_pred eEEEeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------ccch
Confidence 489999999998654 7899999999999999999999999999999999999999999976522 2355
Q ss_pred EEcCCcc---cccccHHHhccc-CC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHcc
Q 001580 745 IIPQSPV---LFSGTVRFNLDP-FS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 819 (1050)
Q Consensus 745 ~v~Q~~~---lf~~tv~~nl~~-~~-~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~ 819 (1050)
+..|+-. .+..+.-+++.+ +. ....+++...+.++|+.......|. .+||+|||.||++||++++
T Consensus 457 ~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~----------~~LS~Gqr~rVlFa~l~~k 526 (614)
T KOG0927|consen 457 RYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPM----------SQLSDGQRRRVLFARLAVK 526 (614)
T ss_pred hhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccch----------hhcccccchhHHHHHHHhc
Confidence 5566542 334466666643 33 2456778888999888765555553 4799999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEe-cChhHHh
Q 001580 820 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEY-DTPEELL 888 (1050)
Q Consensus 820 ~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~-g~~~el~ 888 (1050)
.|.+|||||||+|||.++...+.++|.+ ..++||+||||...+.. +++|++.++|.+... |.+....
T Consensus 527 qP~lLlLDEPtnhLDi~tid~laeaiNe--~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk 595 (614)
T KOG0927|consen 527 QPHLLLLDEPTNHLDIETIDALAEAINE--FPGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYK 595 (614)
T ss_pred CCcEEEecCCCcCCCchhHHHHHHHHhc--cCCceeeeechhhHHHHHHHHhHhhccCceeecCccHHHHH
Confidence 9999999999999999999999999998 67889999999999988 999999999887653 6665543
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-50 Score=447.37 Aligned_cols=200 Identities=20% Similarity=0.308 Sum_probs=166.3
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhhe
Q 001580 664 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 743 (1050)
Q Consensus 664 ~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i 743 (1050)
..+++.+|+|.|.++..+.+.++++.+.--+++++||+||+||||+++++.|...|..|.+.+.+ |.+|
T Consensus 361 p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~ri 429 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLRI 429 (582)
T ss_pred CeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------ccee
Confidence 35999999999987654789999999999999999999999999999999999999999988763 6789
Q ss_pred EEEcCCcccc-cccHH--Hhcc-cCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHcc
Q 001580 744 GIIPQSPVLF-SGTVR--FNLD-PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 819 (1050)
Q Consensus 744 ~~v~Q~~~lf-~~tv~--~nl~-~~~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~ 819 (1050)
+|..|.-.=+ +.++. +-+. .+...+++++++.+...|+...+..-+ ...||||||-||++|.....
T Consensus 430 ~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~~~~~ 499 (582)
T KOG0062|consen 430 KYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAACTWN 499 (582)
T ss_pred cchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHHHhcC
Confidence 9999987533 22322 1111 122337889999998877765544322 25699999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEe-cChhH
Q 001580 820 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEY-DTPEE 886 (1050)
Q Consensus 820 ~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~-g~~~e 886 (1050)
+|.+|+|||||++||.++...+-++|+. .++.||+||||.+++.. |+.+|+.++|+|... |+..+
T Consensus 500 ~PhlLVLDEPTNhLD~dsl~AL~~Al~~--F~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~~~~ 566 (582)
T KOG0062|consen 500 NPHLLVLDEPTNHLDRDSLGALAKALKN--FNGGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGGIDK 566 (582)
T ss_pred CCcEEEecCCCccccHHHHHHHHHHHHh--cCCcEEEEECcHHHHhhcCceeEEEcCCcEEeeeccHHH
Confidence 9999999999999999999999999988 56679999999999988 999999999999764 44433
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-50 Score=465.14 Aligned_cols=263 Identities=28% Similarity=0.452 Sum_probs=232.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCC-CCCCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCc
Q 001580 4 VAWQVVNANVSLKRMEEFLLAEEKILLPNPPLT-SGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEG 82 (1050)
Q Consensus 4 ~i~~~~~a~~s~~Ri~~fl~~~e~~~~~~~~~~-~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsG 82 (1050)
..+.+.++--+-+|+-+|++.+...+......+ .-.-.|+|+||+|+||.+++.++|+|+||+|+|||.+|||||||+|
T Consensus 427 ~ys~lmkgvGAs~rvFel~dr~P~i~~~G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsG 506 (716)
T KOG0058|consen 427 FYSELMKGVGASERVFELMDRKPRIPLTGTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSG 506 (716)
T ss_pred HHHHHHHhcchHHHHHHHhccCCCCCCCCccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCC
Confidence 345677778889999999998775543221111 2233599999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCeeE------------EeCcEEEEecCCCCCcccHHHHhccCCC-CCHHHHHHHHHHhCcHHH
Q 001580 83 KTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHD 149 (1050)
Q Consensus 83 KSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~TV~eni~~g~~-~~~~~~~~~~~~~~l~~~ 149 (1050)
|||+.++|..+|+|++|.+.. +|++||+|.|+|.||++||+|||.+|.. .+.+++..+++.++.+++
T Consensus 507 KSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~F 586 (716)
T KOG0058|consen 507 KSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEF 586 (716)
T ss_pred HHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHH
Confidence 999999999999999987642 4667999999999999999999999965 356788889999999999
Q ss_pred HhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcch
Q 001580 150 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHF 229 (1050)
Q Consensus 150 ~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~ 229 (1050)
+..+|+|++|.|||+|.+|||||||||||||||+++|.||||||.||+||.+++..+.+.+-+ ..+++|||+|+|+++.
T Consensus 587 I~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~-~~~~rTVlvIAHRLST 665 (716)
T KOG0058|consen 587 ITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDR-LMQGRTVLVIAHRLST 665 (716)
T ss_pred HHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHH-hhcCCeEEEEehhhhH
Confidence 999999999999999999999999999999999999999999999999999999988776543 3457999999999999
Q ss_pred hhhcCEEEEEcCCeEeeccChhhhhcCh-HHHHHHHHHh
Q 001580 230 LSQVDRIILVHEGMVKEEGTFEDLSNNG-ELFQKLMENA 267 (1050)
Q Consensus 230 l~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~~~~l~~~~ 267 (1050)
+++||+|+++++|++++.|+++|+++++ +.|.+++..+
T Consensus 666 V~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gly~~Lv~~q 704 (716)
T KOG0058|consen 666 VRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQRQ 704 (716)
T ss_pred hhhccEEEEEcCCeEEecccHHHHhhCcccHHHHHHHHh
Confidence 9999999999999999999999999987 7999998754
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-50 Score=401.24 Aligned_cols=214 Identities=29% Similarity=0.485 Sum_probs=186.8
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCC-CChHHHhhheE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK-FGLMDLRKILG 744 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~-~~~~~~r~~i~ 744 (1050)
|+++||+++|+.. .+|+|||++|.+||+++|+||||||||||||||.|+-+|++|+|.++|.++.. .+...+|+++|
T Consensus 3 i~i~~l~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vG 80 (240)
T COG1126 3 IEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG 80 (240)
T ss_pred EEEEeeeEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcC
Confidence 8999999999754 79999999999999999999999999999999999999999999999987743 36778999999
Q ss_pred EEcCCcccccc-cHHHhcccCC----CCCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001580 745 IIPQSPVLFSG-TVRFNLDPFS----EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 815 (1050)
Q Consensus 745 ~v~Q~~~lf~~-tv~~nl~~~~----~~~~~----~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAr 815 (1050)
+|+|+..||.. |+.+|+.... ..+.+ ...+.|+++++.+- ....+.+||||||||+||||
T Consensus 81 mVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~k-----------a~~yP~qLSGGQqQRVAIAR 149 (240)
T COG1126 81 MVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADK-----------ADAYPAQLSGGQQQRVAIAR 149 (240)
T ss_pred eecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhh-----------hhhCccccCcHHHHHHHHHH
Confidence 99999999976 9999997532 22222 23334445554444 44445789999999999999
Q ss_pred HHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 001580 816 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 892 (1050)
Q Consensus 816 all~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~ 892 (1050)
||.-+|+++|+|||||+|||+....+.+.++++. .|.|+|+|||+|.++.. ||||+.|++|+|++.|+|+++..++.
T Consensus 150 ALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~ 228 (240)
T COG1126 150 ALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPK 228 (240)
T ss_pred HHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCC
Confidence 9999999999999999999999999999999976 47899999999999988 99999999999999999999998764
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-49 Score=431.42 Aligned_cols=238 Identities=35% Similarity=0.688 Sum_probs=221.8
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheE
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 744 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 744 (1050)
.|+++|++++|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++ ++|+|.++|.++..++...+|+.|+
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFG 80 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEE
Confidence 589999999996444579999999999999999999999999999999999998 7899999999999999999999999
Q ss_pred EEcCCcccccccHHHhcccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCEE
Q 001580 745 IIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 824 (1050)
Q Consensus 745 ~v~Q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~il 824 (1050)
|+||++.+|++|+++|++++...++++++++++.+++.+++.++|.++++.+++.+.+||||||||++||||++++|+||
T Consensus 81 ~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~il 160 (275)
T cd03289 81 VIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKIL 160 (275)
T ss_pred EECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999876656788899999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHhhcc
Q 001580 825 VLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGA 904 (1050)
Q Consensus 825 lLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~~~ 904 (1050)
||||||++||+.+.+.+++.|++...++|||+|||+++++..||||++|++|++++.|+|+++++.. +.|.+++.....
T Consensus 161 llDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~-~~~~~~~~~~~~ 239 (275)
T cd03289 161 LLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEK-SHFKQAISPSDR 239 (275)
T ss_pred EEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCc-HHHHHHHhhcch
Confidence 9999999999999999999999887789999999999999889999999999999999999999853 567777765543
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-48 Score=470.90 Aligned_cols=261 Identities=30% Similarity=0.509 Sum_probs=232.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcccCCC--CCCCCCCCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCC
Q 001580 3 VVAWQVVNANVSLKRMEEFLLAEEKILLPN--PPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTG 80 (1050)
Q Consensus 3 ~~i~~~~~a~~s~~Ri~~fl~~~e~~~~~~--~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nG 80 (1050)
.....+.+++++.+|+.+.++.|...+... ...++....|+++|++|+|+.. +.++|+|+||+|++||++||||+||
T Consensus 431 ~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SG 509 (709)
T COG2274 431 QLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSG 509 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCC
Confidence 456778899999999999999886433222 1222333469999999999854 3479999999999999999999999
Q ss_pred CcHHHHHHHHHcCCCCCCCCeeE------------EeCcEEEEecCCCCCcccHHHHhccCCCCC-HHHHHHHHHHhCcH
Q 001580 81 EGKTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFGSAFE-PARYEKAIDVTSLQ 147 (1050)
Q Consensus 81 sGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~TV~eni~~g~~~~-~~~~~~~~~~~~l~ 147 (1050)
||||||+|+|+|+++|+.|.+.. +|+.||||+|++.+|++||+|||.++.+.. .++...+++.++.+
T Consensus 510 sGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~ 589 (709)
T COG2274 510 SGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAH 589 (709)
T ss_pred CCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcH
Confidence 99999999999999999887643 456799999999999999999999997654 47888899999999
Q ss_pred HHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCc
Q 001580 148 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL 227 (1050)
Q Consensus 148 ~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~ 227 (1050)
+++..+|.|++|.+||+|.+||||||||++|||||+++|+|||||||||+||+++++.+.+.+.+. .+|+|+|+|||++
T Consensus 590 ~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~-~~~~T~I~IaHRl 668 (709)
T COG2274 590 EFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQI-LQGRTVIIIAHRL 668 (709)
T ss_pred HHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHH-hcCCeEEEEEccc
Confidence 999999999999999999999999999999999999999999999999999999999999988654 4679999999999
Q ss_pred chhhhcCEEEEEcCCeEeeccChhhhhcChHHHHHHHH
Q 001580 228 HFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 265 (1050)
Q Consensus 228 ~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~~ 265 (1050)
..+..||||++|++|+|+++|+++|+++.++.|.+++.
T Consensus 669 ~ti~~adrIiVl~~Gkiv~~gs~~ell~~~g~y~~l~~ 706 (709)
T COG2274 669 STIRSADRIIVLDQGKIVEQGSHEELLAQGGLYARLYQ 706 (709)
T ss_pred hHhhhccEEEEccCCceeccCCHHHHHHhcChHHHHHh
Confidence 99999999999999999999999999999888888764
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-48 Score=472.24 Aligned_cols=260 Identities=28% Similarity=0.422 Sum_probs=227.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcccCCCC-CCC-CCCCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCC
Q 001580 3 VVAWQVVNANVSLKRMEEFLLAEEKILLPNP-PLT-SGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTG 80 (1050)
Q Consensus 3 ~~i~~~~~a~~s~~Ri~~fl~~~e~~~~~~~-~~~-~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nG 80 (1050)
..++.+.++++|++||.++++.++....... +.+ +....|+++|++|.|+. ++++|+|+||++++|+++||||+||
T Consensus 309 ~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SG 386 (588)
T PRK11174 309 TFYHAKAQAVGAAESLVTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSG 386 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccCCCccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCC
Confidence 4566788999999999999987653211111 111 12235999999987753 3679999999999999999999999
Q ss_pred CcHHHHHHHHHcCCCCCCCCeeE------------EeCcEEEEecCCCCCcccHHHHhccCCC-CCHHHHHHHHHHhCcH
Q 001580 81 EGKTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQ 147 (1050)
Q Consensus 81 sGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~TV~eni~~g~~-~~~~~~~~~~~~~~l~ 147 (1050)
||||||+++|+|++ |++|.+.. +++.|+||||+|++|++||+|||.+|.+ .+++++.++++.+++.
T Consensus 387 sGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~ 465 (588)
T PRK11174 387 AGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVS 465 (588)
T ss_pred CCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHH
Confidence 99999999999999 88776532 2346999999999999999999999954 6788999999999999
Q ss_pred HHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCc
Q 001580 148 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL 227 (1050)
Q Consensus 148 ~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~ 227 (1050)
+++..+|+|++|.+|++|.+||||||||++|||||+++|+|||||||||+||+++++.+.+.+.+. .+++|+|+|||++
T Consensus 466 ~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~-~~~~TvIiItHrl 544 (588)
T PRK11174 466 EFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAA-SRRQTTLMVTHQL 544 (588)
T ss_pred HHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH-hCCCEEEEEecCh
Confidence 999999999999999999999999999999999999999999999999999999999999877554 4689999999999
Q ss_pred chhhhcCEEEEEcCCeEeeccChhhhhcChHHHHHHHHH
Q 001580 228 HFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 266 (1050)
Q Consensus 228 ~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~~~ 266 (1050)
+.+..+|+|++|++|+++++|+++++.++.+.|+.++..
T Consensus 545 ~~i~~aD~Iivl~~G~i~e~G~~~eL~~~~~~y~~l~~~ 583 (588)
T PRK11174 545 EDLAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATLLAH 583 (588)
T ss_pred HHHHhCCEEEEEeCCeEeecCCHHHHHhcchHHHHHHHH
Confidence 999999999999999999999999999888889888754
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-48 Score=408.40 Aligned_cols=220 Identities=31% Similarity=0.453 Sum_probs=190.3
Q ss_pred EEEEEEEEEeCCC---CCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHH---H
Q 001580 666 IKFEDVVLRYRPE---LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---L 739 (1050)
Q Consensus 666 i~~~~v~~~y~~~---~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~---~ 739 (1050)
|++++|++.|... ...+|+||||+|++||++||+|+||||||||+|++.++-+|++|+|.+||.|+..++... +
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7899999999752 246999999999999999999999999999999999999999999999999988777554 5
Q ss_pred hhheEEEcCCccccc-ccHHHhcccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 001580 740 RKILGIIPQSPVLFS-GTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 811 (1050)
Q Consensus 740 r~~i~~v~Q~~~lf~-~tv~~nl~~~~---~~~~----~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl 811 (1050)
|++||+++|++.|++ .||.+|+.+.- ..+. .++.+.|+.+++.+...+ .+.+|||||||||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~-----------yP~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADR-----------YPAQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhcc-----------CchhcCcchhhHH
Confidence 788999999999997 59999997532 1222 345555555555555444 4578999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001580 812 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 888 (1050)
Q Consensus 812 ~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 888 (1050)
+|||||+.+|+|||+|||||+|||+|.+.|.+.|++.. -|-||++|||.|+.+++ ||||.||++|+++|.|+..++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999999999864 37899999999999998 9999999999999999999999
Q ss_pred hcCCChHH
Q 001580 889 SNEGSSFS 896 (1050)
Q Consensus 889 ~~~~~~~~ 896 (1050)
.++.....
T Consensus 231 ~~Pk~~~t 238 (339)
T COG1135 231 ANPKHAIT 238 (339)
T ss_pred cCcchHHH
Confidence 87754433
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-47 Score=470.44 Aligned_cols=260 Identities=27% Similarity=0.370 Sum_probs=229.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCC
Q 001580 2 FVVAWQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGE 81 (1050)
Q Consensus 2 ~~~i~~~~~a~~s~~Ri~~fl~~~e~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGs 81 (1050)
...+.++.+++++++|+.++++.++..........+....|+++|++|+|+.. ++++|+|+||+|++||++||||+|||
T Consensus 412 ~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGs 490 (686)
T TIGR03797 412 SNTLISILAVIPLWERAKPILEALPEVDEAKTDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGS 490 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccccCcCCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCC
Confidence 45678888999999999999987643221111111112359999999999743 46899999999999999999999999
Q ss_pred cHHHHHHHHHcCCCCCCCCeeE------------EeCcEEEEecCCCCCcccHHHHhccCCCCCHHHHHHHHHHhCcHHH
Q 001580 82 GKTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHD 149 (1050)
Q Consensus 82 GKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~TV~eni~~g~~~~~~~~~~~~~~~~l~~~ 149 (1050)
|||||+++|+|+++|++|.+.. +++.||||||+|++|++||+|||.++.+.+++++.++++.+++.++
T Consensus 491 GKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~ 570 (686)
T TIGR03797 491 GKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAED 570 (686)
T ss_pred CHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHH
Confidence 9999999999999999887542 2456999999999999999999999977778889999999999999
Q ss_pred HhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcch
Q 001580 150 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHF 229 (1050)
Q Consensus 150 ~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~ 229 (1050)
++.+|.|++|.+|++|.+||||||||++|||||+++|++||||||||+||+.+++.+.+.+.+. ++|+|+|||+++.
T Consensus 571 i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~ 647 (686)
T TIGR03797 571 IRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLST 647 (686)
T ss_pred HHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHH
Confidence 9999999999999999999999999999999999999999999999999999999999988664 5899999999999
Q ss_pred hhhcCEEEEEcCCeEeeccChhhhhcChHHHHHHHH
Q 001580 230 LSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 265 (1050)
Q Consensus 230 l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~~ 265 (1050)
+..+|+|++|++|+++++|+++++.+..+.|..+..
T Consensus 648 i~~~D~Iivl~~G~iv~~G~~~~Ll~~~~~y~~l~~ 683 (686)
T TIGR03797 648 IRNADRIYVLDAGRVVQQGTYDELMAREGLFAQLAR 683 (686)
T ss_pred HHcCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHH
Confidence 999999999999999999999999988888888765
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-47 Score=389.99 Aligned_cols=219 Identities=32% Similarity=0.523 Sum_probs=192.6
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
|+|+||||+|.+. .+++|+||+|++||.+.++|||||||||++++|.|+++|++|+|+++|.+++++++..+|++|||
T Consensus 2 I~~~nvsk~y~~~--~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYGNK--KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcCCc--eeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 7899999999743 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCcccccc-cHHHhcccCCC---CCH----HHHHHHHHHhcHH--HHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001580 746 IPQSPVLFSG-TVRFNLDPFSE---HSD----ADLWEALERAHLK--DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 815 (1050)
Q Consensus 746 v~Q~~~lf~~-tv~~nl~~~~~---~~~----~~~~~~l~~~~~~--~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAr 815 (1050)
|-|...||.. ||.+||..... .+. .++.+.++..++. ++..+ .+..|||||+|||.+||
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~R-----------yP~eLSGGQQQRVGv~R 148 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADR-----------YPHELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhc-----------CchhcCcchhhHHHHHH
Confidence 9999999976 99999975322 223 3344455555442 34444 45789999999999999
Q ss_pred HHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 001580 816 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 892 (1050)
Q Consensus 816 all~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~ 892 (1050)
||+.+|+|||+|||+++|||.++..+++.+.++.+ ++|+|+||||++++.. +|||.+|++|+++.+++|+++++++.
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pa 228 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPA 228 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCcc
Confidence 99999999999999999999999999999988653 7999999999999766 99999999999999999999999876
Q ss_pred ChHHH
Q 001580 893 SSFSK 897 (1050)
Q Consensus 893 ~~~~~ 897 (1050)
..|-.
T Consensus 229 n~FV~ 233 (309)
T COG1125 229 NDFVE 233 (309)
T ss_pred HHHHH
Confidence 55543
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-46 Score=427.36 Aligned_cols=258 Identities=29% Similarity=0.482 Sum_probs=226.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCCC-CCCCCCcEEE--EeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCc
Q 001580 6 WQVVNANVSLKRMEEFLLAEEKILLPNPP-LTSGLPAISI--RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEG 82 (1050)
Q Consensus 6 ~~~~~a~~s~~Ri~~fl~~~e~~~~~~~~-~~~~~~~i~~--~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsG 82 (1050)
+.-.++..+.+++..|++.|........+ .....+.+++ +|++|.|+++ +++++|+||++++|++++|||+||||
T Consensus 282 H~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaG 359 (559)
T COG4988 282 HAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAG 359 (559)
T ss_pred HHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCC
Confidence 44556788899999999988754322221 2223234455 5999999853 38999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCeeE------------EeCcEEEEecCCCCCcccHHHHhccCCC-CCHHHHHHHHHHhCcHHH
Q 001580 83 KTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHD 149 (1050)
Q Consensus 83 KSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~TV~eni~~g~~-~~~~~~~~~~~~~~l~~~ 149 (1050)
||||+++|+|+.+|++|...+ ++++++||||+|.+|.+|++|||.++.+ .+++++.++++.+++.+.
T Consensus 360 KSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~ 439 (559)
T COG4988 360 KSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEF 439 (559)
T ss_pred HHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHh
Confidence 999999999999999877643 4567999999999999999999999976 456888899999999999
Q ss_pred HhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcch
Q 001580 150 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHF 229 (1050)
Q Consensus 150 ~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~ 229 (1050)
++. |+|.+|.+||+|..|||||+|||+|||||+++++++||||||+|||+++++.+.+.+.+.. +++|+|+|||+++.
T Consensus 440 v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~-~~ktvl~itHrl~~ 517 (559)
T COG4988 440 VPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELA-KQKTVLVITHRLED 517 (559)
T ss_pred hcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHH-hCCeEEEEEcChHH
Confidence 998 9999999999999999999999999999999999999999999999999999999877654 45999999999999
Q ss_pred hhhcCEEEEEcCCeEeeccChhhhhcChHHHHHHHHHh
Q 001580 230 LSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 267 (1050)
Q Consensus 230 l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~ 267 (1050)
+..+|+|++|++|++++.|+++++..+.+.|+.+...+
T Consensus 518 ~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~~q 555 (559)
T COG4988 518 AADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQQ 555 (559)
T ss_pred HhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHHHH
Confidence 99999999999999999999999999999999998754
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-46 Score=465.58 Aligned_cols=259 Identities=26% Similarity=0.411 Sum_probs=225.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCC-CCCCCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCC
Q 001580 2 FVVAWQVVNANVSLKRMEEFLLAEEKILLPNPPL-TSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTG 80 (1050)
Q Consensus 2 ~~~i~~~~~a~~s~~Ri~~fl~~~e~~~~~~~~~-~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nG 80 (1050)
+..+..+.++.++++|+.++++.++....+.... .+....|+++|++|+|+..+++++|+|+||+|++||+++|||+||
T Consensus 438 ~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SG 517 (711)
T TIGR00958 438 SYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSG 517 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCC
Confidence 4567788999999999999998765332111111 122235999999999986555789999999999999999999999
Q ss_pred CcHHHHHHHHHcCCCCCCCCeeE------------EeCcEEEEecCCCCCcccHHHHhccCCC-CCHHHHHHHHHHhCcH
Q 001580 81 EGKTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQ 147 (1050)
Q Consensus 81 sGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~TV~eni~~g~~-~~~~~~~~~~~~~~l~ 147 (1050)
||||||+++|+|+++|++|.+.. .++.|+||||+|++|++||+|||.+|.+ .+++++.++++.+++.
T Consensus 518 sGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~ 597 (711)
T TIGR00958 518 SGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAH 597 (711)
T ss_pred CCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCH
Confidence 99999999999999999886643 2346999999999999999999999854 4567888999999999
Q ss_pred HHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCc
Q 001580 148 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL 227 (1050)
Q Consensus 148 ~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~ 227 (1050)
+.++.+|+|++|.+|++|.+||||||||++|||||+++|+|||||||||+||+++++.+.+ .. ..+++|+|+|||++
T Consensus 598 ~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl 674 (711)
T TIGR00958 598 DFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRL 674 (711)
T ss_pred HHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccH
Confidence 9999999999999999999999999999999999999999999999999999999999988 22 23579999999999
Q ss_pred chhhhcCEEEEEcCCeEeeccChhhhhcChHHHHHH
Q 001580 228 HFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 263 (1050)
Q Consensus 228 ~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l 263 (1050)
+.+..+|+|++|++|++++.|++++++++.+.|+++
T Consensus 675 ~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~y~~l 710 (711)
T TIGR00958 675 STVERADQILVLKKGSVVEMGTHKQLMEDQGCYKHL 710 (711)
T ss_pred HHHHhCCEEEEEECCEEEEeeCHHHHHhCCCchHhc
Confidence 999999999999999999999999998877777654
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-46 Score=466.36 Aligned_cols=259 Identities=29% Similarity=0.450 Sum_probs=227.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhcccCCC------CCC--CCCCCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEE
Q 001580 2 FVVAWQVVNANVSLKRMEEFLLAEEKILLPN------PPL--TSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLV 73 (1050)
Q Consensus 2 ~~~i~~~~~a~~s~~Ri~~fl~~~e~~~~~~------~~~--~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~ 73 (1050)
+.++.++.+++++++|+.++++.++...... +.. .+....|+++|++|+|+.. ++++|+|+||+|++||++
T Consensus 430 ~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~v 508 (710)
T TIGR03796 430 VGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRV 508 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEE
Confidence 4567888999999999999998764322111 011 1112359999999999843 468999999999999999
Q ss_pred EEEcCCCCcHHHHHHHHHcCCCCCCCCeeE------------EeCcEEEEecCCCCCcccHHHHhccCC-CCCHHHHHHH
Q 001580 74 AIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFGS-AFEPARYEKA 140 (1050)
Q Consensus 74 ~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~TV~eni~~g~-~~~~~~~~~~ 140 (1050)
+|||+||||||||+++|+|+++|++|.+.. +++.||||||+|++|++||+|||.++. ..+++++.++
T Consensus 509 aIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~a 588 (710)
T TIGR03796 509 ALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRA 588 (710)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHH
Confidence 999999999999999999999999887643 355799999999999999999999875 4667888999
Q ss_pred HHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEE
Q 001580 141 IDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTR 220 (1050)
Q Consensus 141 ~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ 220 (1050)
++.+++.++++.+|.|++|.+|++|.+||||||||++|||||+++|+|||||||||+||+++++.+++.+.+ .++|+
T Consensus 589 l~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~ 665 (710)
T TIGR03796 589 CKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTC 665 (710)
T ss_pred HHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999998865 47999
Q ss_pred EEeccCcchhhhcCEEEEEcCCeEeeccChhhhhcChHHHHHHH
Q 001580 221 VLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 264 (1050)
Q Consensus 221 ilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~ 264 (1050)
|+|||+++.+..||+|++|++|++++.|+++++.+..+.|+.++
T Consensus 666 IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~~~~y~~l~ 709 (710)
T TIGR03796 666 IIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAYARLI 709 (710)
T ss_pred EEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHcCCcHHHHh
Confidence 99999999999999999999999999999999988877777654
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-46 Score=453.15 Aligned_cols=262 Identities=32% Similarity=0.529 Sum_probs=232.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCc
Q 001580 3 VVAWQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEG 82 (1050)
Q Consensus 3 ~~i~~~~~a~~s~~Ri~~fl~~~e~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsG 82 (1050)
.++..+..+.+|.+|+.++++.++....+..+.......|+++|++|+|+. ++++|+|+||++++||++|||||||||
T Consensus 290 ~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsG 367 (567)
T COG1132 290 EVVSLLQRASAAAERLFELLDEEPEVEDPPDPLKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSG 367 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCC
Confidence 456778889999999999999865322211111222234999999999974 468999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCeeE------------EeCcEEEEecCCCCCcccHHHHhccCCC-CCHHHHHHHHHHhCcHHH
Q 001580 83 KTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHD 149 (1050)
Q Consensus 83 KSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~TV~eni~~g~~-~~~~~~~~~~~~~~l~~~ 149 (1050)
|||++++|.|+++|++|.+.. ++..|+||||+|++|++||+|||.+|.+ ..++++.++++.+++.+.
T Consensus 368 KSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~ 447 (567)
T COG1132 368 KSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEF 447 (567)
T ss_pred HHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHH
Confidence 999999999999998887654 2456999999999999999999999976 467889999999999999
Q ss_pred HhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcch
Q 001580 150 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHF 229 (1050)
Q Consensus 150 ~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~ 229 (1050)
+..+|+|++|.+|++|.+||||||||++||||++++|++|+||||||+||+++++.+.+.+.+.. +++|+|+|+|+++.
T Consensus 448 I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlst 526 (567)
T COG1132 448 IANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLST 526 (567)
T ss_pred HHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhH
Confidence 99999999999999999999999999999999999999999999999999999999999886443 56899999999999
Q ss_pred hhhcCEEEEEcCCeEeeccChhhhhcChHHHHHHHHHh
Q 001580 230 LSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 267 (1050)
Q Consensus 230 l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~ 267 (1050)
+..||+|++|++|++++.|+++++.++.+.|++++..+
T Consensus 527 i~~aD~IiVl~~G~i~e~G~h~eLl~~~g~y~~l~~~~ 564 (567)
T COG1132 527 IKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQAQ 564 (567)
T ss_pred HHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHHh
Confidence 99999999999999999999999999999999988654
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-46 Score=454.49 Aligned_cols=262 Identities=27% Similarity=0.408 Sum_probs=228.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCc
Q 001580 3 VVAWQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEG 82 (1050)
Q Consensus 3 ~~i~~~~~a~~s~~Ri~~fl~~~e~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsG 82 (1050)
.++.++.+++.+++|+.++++.++.......+.++....|+++|++|+|+.. ++++|+|+||+|++|++++|+|+||||
T Consensus 303 ~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsG 381 (582)
T PRK11176 303 NVNAQFQRGMAACQTLFAILDLEQEKDEGKRVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSG 381 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCC
Confidence 4566778899999999999987653221111111222359999999999743 468999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCeeE------------EeCcEEEEecCCCCCcccHHHHhccCCC--CCHHHHHHHHHHhCcHH
Q 001580 83 KTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFGSA--FEPARYEKAIDVTSLQH 148 (1050)
Q Consensus 83 KSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~TV~eni~~g~~--~~~~~~~~~~~~~~l~~ 148 (1050)
||||+++|+|+++|++|.+.. +++.|+||||+|.+|++||+|||.+|.+ .+++++.++++.+++.+
T Consensus 382 KSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~ 461 (582)
T PRK11176 382 KSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMD 461 (582)
T ss_pred HHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHH
Confidence 999999999999999886643 2346999999999999999999999853 57788999999999999
Q ss_pred HHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcc
Q 001580 149 DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLH 228 (1050)
Q Consensus 149 ~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~ 228 (1050)
.++.+|+|++|.+|++|.+||||||||++|||||+++|+|+|||||||+||++++..+++.+.+. .+++|+|+|||+++
T Consensus 462 ~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~-~~~~tvI~VtHr~~ 540 (582)
T PRK11176 462 FINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL-QKNRTSLVIAHRLS 540 (582)
T ss_pred HHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHH-hCCCEEEEEecchH
Confidence 99999999999999999999999999999999999999999999999999999999999987664 35799999999999
Q ss_pred hhhhcCEEEEEcCCeEeeccChhhhhcChHHHHHHHHH
Q 001580 229 FLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 266 (1050)
Q Consensus 229 ~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~~~ 266 (1050)
.++.||+|++|++|++++.|+++++.+..+.|+.+...
T Consensus 541 ~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~~~y~~l~~~ 578 (582)
T PRK11176 541 TIEKADEILVVEDGEIVERGTHAELLAQNGVYAQLHKM 578 (582)
T ss_pred HHHhCCEEEEEECCEEEEeCCHHHHHhCCChHHHHHHH
Confidence 99999999999999999999999999888888887753
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=376.83 Aligned_cols=203 Identities=32% Similarity=0.506 Sum_probs=179.6
Q ss_pred cEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE-------------EeCc
Q 001580 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 107 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~ 107 (1050)
.|+++|++++|+ +..+|+||||+|++||+++|+|||||||||||++|.|+.+|++|.+.. .|..
T Consensus 2 mi~i~~l~K~fg---~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeC---CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 589999999997 357999999999999999999999999999999999999999886543 2346
Q ss_pred EEEEecCCCCC-cccHHHHhccCCC----CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHH
Q 001580 108 VAYVPQVSWIF-NATVRDNILFGSA----FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 178 (1050)
Q Consensus 108 i~~v~Q~~~l~-~~TV~eni~~g~~----~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~L 178 (1050)
+|+|+|+..|| ..||.||+.++.. ... ++....++..+|.+..+.+| .+|||||||||||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHH
Confidence 99999999998 6899999998731 122 23344577788888888877 4899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhhc-CEEEEEcCCeEeeccChhhhhcCh
Q 001580 179 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNNG 257 (1050)
Q Consensus 179 AraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~~-d~i~~l~~G~i~~~g~~~~l~~~~ 257 (1050)
||||+.+|+++|+|||||+|||+.+..+.+.+..+...|.|.|+|||++.|+..+ |||+.|++|+++++|+++++..++
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 9999999999999999999999999999998888888999999999999999985 999999999999999999988664
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=414.28 Aligned_cols=227 Identities=23% Similarity=0.359 Sum_probs=197.6
Q ss_pred CCCCCccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhcccc-----CCccEEEECCeecCC
Q 001580 659 GWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK 733 (1050)
Q Consensus 659 ~~~~~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~-----p~~G~i~~~g~~i~~ 733 (1050)
.|+..+.|+++|++++|++..+++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 74 ~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 74 DFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153 (329)
T ss_pred CCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 477778899999999996444479999999999999999999999999999999999996 579999999999973
Q ss_pred --CChHHHhhheEEEcCCcccccccHHHhcccCC---CCCHHHH-----HHHHHHhcHHHHHHHccCCcchhhhcCCCCC
Q 001580 734 --FGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS---EHSDADL-----WEALERAHLKDAIRRNSLGLDAQVSEAGENF 803 (1050)
Q Consensus 734 --~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~~~~~~-----~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~L 803 (1050)
.+...+|+.++||||+|.+|++|+++|+.+.. ..++.+. .++++.+++ +.++++.+++.+.+|
T Consensus 154 ~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L-------~~~l~~~~~~~~~~L 226 (329)
T PRK14257 154 KKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAAL-------WDEVKDDLDKAGNAL 226 (329)
T ss_pred cccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCC-------cchhhhhhhCCcccC
Confidence 44567889999999999999999999998532 1233332 333444443 335667889999999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001580 804 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 882 (1050)
Q Consensus 804 SgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 882 (1050)
||||||||+||||++++|+||||||||++||+.+...++++|+++.+++|+|+|||+++++.. ||||++|++|+|++.|
T Consensus 227 SgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g 306 (329)
T PRK14257 227 SGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAG 306 (329)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999998888999999999999988 9999999999999999
Q ss_pred ChhHHhhcCC
Q 001580 883 TPEELLSNEG 892 (1050)
Q Consensus 883 ~~~el~~~~~ 892 (1050)
+++++...+.
T Consensus 307 ~~~~l~~~~~ 316 (329)
T PRK14257 307 ETKTIFIHPK 316 (329)
T ss_pred CHHHHhcCCC
Confidence 9999986543
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=461.68 Aligned_cols=260 Identities=27% Similarity=0.481 Sum_probs=227.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhcccCCC--CCCCCCCCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCC
Q 001580 2 FVVAWQVVNANVSLKRMEEFLLAEEKILLPN--PPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGT 79 (1050)
Q Consensus 2 ~~~i~~~~~a~~s~~Ri~~fl~~~e~~~~~~--~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~n 79 (1050)
..+++++.+++++++|+.++++.++....+. .+..+....|+++|++|+|+. ++++|+|+||+|++|+++||+|+|
T Consensus 432 ~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~S 509 (708)
T TIGR01193 432 INLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMS 509 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCC
Confidence 3567788899999999999998764322111 111122235999999999973 468999999999999999999999
Q ss_pred CCcHHHHHHHHHcCCCCCCCCeeE------------EeCcEEEEecCCCCCcccHHHHhccCC--CCCHHHHHHHHHHhC
Q 001580 80 GEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFGS--AFEPARYEKAIDVTS 145 (1050)
Q Consensus 80 GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~TV~eni~~g~--~~~~~~~~~~~~~~~ 145 (1050)
|||||||+++|+|+++|++|.+.. +++.||||||+|++|++||+|||.+|. ..+++++.++++.++
T Consensus 510 GsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~ 589 (708)
T TIGR01193 510 GSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAE 589 (708)
T ss_pred CCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhC
Confidence 999999999999999999887643 245699999999999999999999983 356778889999999
Q ss_pred cHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEecc
Q 001580 146 LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTN 225 (1050)
Q Consensus 146 l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH 225 (1050)
+.+.+..+|.|++|.+|++|.+||||||||++|||||+++|++||||||||+||+++++.+.+.+.+. +++|+|+|||
T Consensus 590 l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitH 667 (708)
T TIGR01193 590 IKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAH 667 (708)
T ss_pred CHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999988753 5799999999
Q ss_pred CcchhhhcCEEEEEcCCeEeeccChhhhhcChHHHHHHHH
Q 001580 226 QLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 265 (1050)
Q Consensus 226 ~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~~ 265 (1050)
+++.+..||+|++|++|++++.|+++++++..+.|+.++.
T Consensus 668 r~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~~~y~~l~~ 707 (708)
T TIGR01193 668 RLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASLIH 707 (708)
T ss_pred chHHHHcCCEEEEEECCEEEEECCHHHHHhcCCcHHHHhh
Confidence 9999999999999999999999999999888778877653
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=377.34 Aligned_cols=216 Identities=30% Similarity=0.511 Sum_probs=187.9
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHH---Hhh
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LRK 741 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~---~r~ 741 (1050)
.|++++|+++|+++ .+++||||+|++||++||+||||||||||+|+|.|+++|++|+|.++|.++.+++..+ +|+
T Consensus 8 ~I~vr~v~~~fG~~--~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 8 LIEVRGVTKSFGDR--VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred eEEEeeeeeecCCE--EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 59999999999764 7999999999999999999999999999999999999999999999999999888654 689
Q ss_pred heEEEcCCcccccc-cHHHhcccC----CCCCHHHHHH----HHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001580 742 ILGIIPQSPVLFSG-TVRFNLDPF----SEHSDADLWE----ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 812 (1050)
Q Consensus 742 ~i~~v~Q~~~lf~~-tv~~nl~~~----~~~~~~~~~~----~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~ 812 (1050)
++|+++|+..||+. ||+||+.+. ....+..+.+ .++.+|+.... ....+..||||+++|++
T Consensus 86 r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~----------~~~~PsELSGGM~KRva 155 (263)
T COG1127 86 RMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAA----------ADLYPSELSGGMRKRVA 155 (263)
T ss_pred heeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhh----------hhhCchhhcchHHHHHH
Confidence 99999999999977 999999752 2233333332 34444444431 23344789999999999
Q ss_pred HHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001580 813 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889 (1050)
Q Consensus 813 lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 889 (1050)
||||+.-+|+||++||||+||||.+...+.+.|+++.+ +.|+++||||++++.. ||||+++.+|+|+..|+++|+.+
T Consensus 156 LARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 156 LARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred HHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999998764 7899999999999877 99999999999999999999998
Q ss_pred cCC
Q 001580 890 NEG 892 (1050)
Q Consensus 890 ~~~ 892 (1050)
..+
T Consensus 236 sd~ 238 (263)
T COG1127 236 SDD 238 (263)
T ss_pred CCC
Confidence 654
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-45 Score=450.56 Aligned_cols=261 Identities=25% Similarity=0.356 Sum_probs=229.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCc
Q 001580 3 VVAWQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEG 82 (1050)
Q Consensus 3 ~~i~~~~~a~~s~~Ri~~fl~~~e~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsG 82 (1050)
..+..+.++.+|++||.++++.++..... .........|+++|++|+|+. ++++|+|+||++++||+++|+|+||||
T Consensus 303 ~~~~~~~~~~~s~~ri~~~l~~~~~~~~~-~~~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsG 379 (592)
T PRK10790 303 TQQSMLQQAVVAGERVFELMDGPRQQYGN-DDRPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSG 379 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccCCC-CccCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCC
Confidence 45667889999999999999876432111 111112235999999999973 357999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCeeE------------EeCcEEEEecCCCCCcccHHHHhccCCCCCHHHHHHHHHHhCcHHHH
Q 001580 83 KTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDL 150 (1050)
Q Consensus 83 KSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~TV~eni~~g~~~~~~~~~~~~~~~~l~~~~ 150 (1050)
||||+++|+|+++|++|.+.. +++.|+||||+|.+|++||+|||.++...+++++.++++.+++.+.+
T Consensus 380 KSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i 459 (592)
T PRK10790 380 KSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELA 459 (592)
T ss_pred HHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHH
Confidence 999999999999999876532 23569999999999999999999999877788899999999999999
Q ss_pred hcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchh
Q 001580 151 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFL 230 (1050)
Q Consensus 151 ~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l 230 (1050)
+.+|+|++|.+|++|.+||||||||++|||||+++|+|+|||||||+||+++++.+.+.+.+.. +++|+|+|||+++.+
T Consensus 460 ~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~-~~~tvIivtHr~~~l 538 (592)
T PRK10790 460 RSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVR-EHTTLVVIAHRLSTI 538 (592)
T ss_pred HhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-CCCEEEEEecchHHH
Confidence 9999999999999999999999999999999999999999999999999999999999876543 469999999999999
Q ss_pred hhcCEEEEEcCCeEeeccChhhhhcChHHHHHHHHHh
Q 001580 231 SQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 267 (1050)
Q Consensus 231 ~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~ 267 (1050)
..+|+|++|++|++++.|+++++.+..+.|+.+...+
T Consensus 539 ~~~D~ii~l~~G~i~~~G~~~~L~~~~~~y~~l~~~~ 575 (592)
T PRK10790 539 VEADTILVLHRGQAVEQGTHQQLLAAQGRYWQMYQLQ 575 (592)
T ss_pred HhCCEEEEEECCEEEEEcCHHHHHhCCCHHHHHHHHH
Confidence 9999999999999999999999998888898887643
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=412.35 Aligned_cols=222 Identities=34% Similarity=0.575 Sum_probs=205.8
Q ss_pred cEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE------------EeCcE
Q 001580 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 108 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 108 (1050)
.|+|+|++|+|+ +++++|+++||+|++||.+||||+|||||||++|+|.++++ ++|.+.+ .|+.|
T Consensus 351 ~I~F~dV~f~y~--~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~I 427 (591)
T KOG0057|consen 351 SIEFDDVHFSYG--PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSI 427 (591)
T ss_pred cEEEEeeEEEeC--CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhhe
Confidence 499999999997 35679999999999999999999999999999999999998 7776543 35569
Q ss_pred EEEecCCCCCcccHHHHhccCCCC-CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 001580 109 AYVPQVSWIFNATVRDNILFGSAF-EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 187 (1050)
Q Consensus 109 ~~v~Q~~~l~~~TV~eni~~g~~~-~~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~ 187 (1050)
|||||+..||+.||.+||.+|++. ..+++.++++.+++++.+..+|+||.|.+|++|..|||||||||+||||++.+|+
T Consensus 428 g~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~ 507 (591)
T KOG0057|consen 428 GVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAP 507 (591)
T ss_pred eEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCC
Confidence 999999999999999999999754 4577888999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhhcCEEEEEcCCeEeeccChhhhhcChHHHHHHHHH
Q 001580 188 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 266 (1050)
Q Consensus 188 vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~~~ 266 (1050)
|++||||||+||.++++.+.+.+.+ ...|+|+|+|-||++.++.+|+|+++++|++.+.|+++|++...+.|+.++..
T Consensus 508 Il~~DEaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~~ 585 (591)
T KOG0057|consen 508 ILLLDEATSALDSETEREILDMIMD-VMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWTT 585 (591)
T ss_pred eEEecCcccccchhhHHHHHHHHHH-hcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhcc
Confidence 9999999999999999999998876 55789999999999999999999999999999999999999988888888754
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-46 Score=371.22 Aligned_cols=219 Identities=26% Similarity=0.449 Sum_probs=197.1
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCc-----cEEEECCeecCC--CChH
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER-----GRILIDGFDIAK--FGLM 737 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~-----G~i~~~g~~i~~--~~~~ 737 (1050)
.++++|+++.|+.. .+|+|||++|++++++|++|||||||||+|+++.++.+... |+|.++|++|.+ ++..
T Consensus 7 ~~~~~~l~~yYg~~--~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~ 84 (253)
T COG1117 7 AIEVRDLNLYYGDK--HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV 84 (253)
T ss_pred eeEecceeEEECch--hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence 48999999999754 79999999999999999999999999999999999998876 999999999976 4688
Q ss_pred HHhhheEEEcCCcccccccHHHhcccCCC-------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001580 738 DLRKILGIIPQSPVLFSGTVRFNLDPFSE-------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 810 (1050)
Q Consensus 738 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~-------~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qr 810 (1050)
.+|++||+|+|.|.-|..||.||+.++.+ .-++.++++|+.+.+++.+.. .+.+.+..|||||+||
T Consensus 85 ~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQQR 157 (253)
T COG1117 85 ELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQQR 157 (253)
T ss_pred HHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHHHH
Confidence 99999999999999999999999986532 124557888999999887653 2345567799999999
Q ss_pred HHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001580 811 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889 (1050)
Q Consensus 811 l~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 889 (1050)
|||||||.-+|+|||||||||+|||.+...|++.|.++.+.-|||+|||.|.-+.+ +|++..|..|+++|.|..+++..
T Consensus 158 LcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~ 237 (253)
T COG1117 158 LCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFT 237 (253)
T ss_pred HHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhc
Confidence 99999999999999999999999999999999999999889999999999999877 99999999999999999999987
Q ss_pred cCC
Q 001580 890 NEG 892 (1050)
Q Consensus 890 ~~~ 892 (1050)
++.
T Consensus 238 ~P~ 240 (253)
T COG1117 238 NPK 240 (253)
T ss_pred Ccc
Confidence 653
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-45 Score=444.58 Aligned_cols=260 Identities=25% Similarity=0.433 Sum_probs=227.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcccCC-CCCCCCCCCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCC
Q 001580 3 VVAWQVVNANVSLKRMEEFLLAEEKILLP-NPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGE 81 (1050)
Q Consensus 3 ~~i~~~~~a~~s~~Ri~~fl~~~e~~~~~-~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGs 81 (1050)
..+.++.++++|++||.++++.++....+ .+...+....|+++|++|+|+.. ++++|+|+||++++|++++|+|+|||
T Consensus 299 ~~~~~~~~~~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGs 377 (574)
T PRK11160 299 GAFQHLGQVIASARRINEITEQKPEVTFPTTSTAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGC 377 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCcccCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCC
Confidence 35677788999999999999876432211 11111222459999999999742 35799999999999999999999999
Q ss_pred cHHHHHHHHHcCCCCCCCCeeE------------EeCcEEEEecCCCCCcccHHHHhccCCC-CCHHHHHHHHHHhCcHH
Q 001580 82 GKTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQH 148 (1050)
Q Consensus 82 GKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~TV~eni~~g~~-~~~~~~~~~~~~~~l~~ 148 (1050)
|||||+++|+|+++|++|.+.. +++.|+||||+|++|++||+|||.++.+ .+++++.++++.+++.+
T Consensus 378 GKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~ 457 (574)
T PRK11160 378 GKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEK 457 (574)
T ss_pred CHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHH
Confidence 9999999999999999887543 2346999999999999999999999864 46678889999999999
Q ss_pred HHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcc
Q 001580 149 DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLH 228 (1050)
Q Consensus 149 ~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~ 228 (1050)
.++. |+|++|.+|++|.+||||||||++|||||+++|++||||||||+||+++++.+.+.+.+. .+++|+|+|||+++
T Consensus 458 ~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~-~~~~tviiitHr~~ 535 (574)
T PRK11160 458 LLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEH-AQNKTVLMITHRLT 535 (574)
T ss_pred HHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-cCCCEEEEEecChh
Confidence 9999 999999999999999999999999999999999999999999999999999999987655 35899999999999
Q ss_pred hhhhcCEEEEEcCCeEeeccChhhhhcChHHHHHHHH
Q 001580 229 FLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 265 (1050)
Q Consensus 229 ~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~~ 265 (1050)
.+..+|+|++|++|++++.|+++++++..+.|+.++.
T Consensus 536 ~~~~~d~i~~l~~G~i~~~g~~~~l~~~~g~y~~l~~ 572 (574)
T PRK11160 536 GLEQFDRICVMDNGQIIEQGTHQELLAQQGRYYQLKQ 572 (574)
T ss_pred HHHhCCEEEEEeCCeEEEeCCHHHHHhcCcHHHHHHh
Confidence 9999999999999999999999999999889988764
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=390.08 Aligned_cols=212 Identities=34% Similarity=0.527 Sum_probs=187.8
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
++++|++|+|++. ++|+|+||+|++||+++|+||||||||||+|+|+|+++|.+|+|.+||+++.+++.+++.+++||
T Consensus 3 L~~~~ls~~y~~~--~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 3 LEVENLSFGYGGK--PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred eEEEEEEEEECCe--eEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence 7899999999743 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCcc-cccccHHHhcccC--------CCCC--H-HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001580 746 IPQSPV-LFSGTVRFNLDPF--------SEHS--D-ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 813 (1050)
Q Consensus 746 v~Q~~~-lf~~tv~~nl~~~--------~~~~--~-~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~l 813 (1050)
|||.+. -|.-||+|-+.++ ...+ | +.+.++++..++.++.++ ....||||||||+.|
T Consensus 81 vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-----------~~~~LSGGerQrv~i 149 (258)
T COG1120 81 VPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-----------PVDELSGGERQRVLI 149 (258)
T ss_pred eccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC-----------cccccChhHHHHHHH
Confidence 999975 4555998865432 1112 2 246777888877776655 235799999999999
Q ss_pred HHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001580 814 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890 (1050)
Q Consensus 814 Arall~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 890 (1050)
||||+++|+||||||||++||....-.+++.++++. +|.|+|+|.||++.+.+ ||++++|++|++++.|+|+|++..
T Consensus 150 ArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~ 229 (258)
T COG1120 150 ARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTE 229 (258)
T ss_pred HHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCH
Confidence 999999999999999999999999999999999976 37999999999999766 999999999999999999998753
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-45 Score=453.82 Aligned_cols=253 Identities=31% Similarity=0.482 Sum_probs=222.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhcccCCCC--CCCCCCCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCC
Q 001580 2 FVVAWQVVNANVSLKRMEEFLLAEEKILLPNP--PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGT 79 (1050)
Q Consensus 2 ~~~i~~~~~a~~s~~Ri~~fl~~~e~~~~~~~--~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~n 79 (1050)
+..+.++.+++++++|+.++++.++....... +..+....|+++|++|+|+. .++++|+|+||+|++||+++|+|+|
T Consensus 422 ~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~Y~~-~~~~vL~~i~l~i~~G~~iaIvG~s 500 (694)
T TIGR03375 422 AGLLTRYQQAKTALQSLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPG-QETPALDNVSLTIRPGEKVAIIGRI 500 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCccceEEEEEEEEEeCC-CCccceeeeeEEECCCCEEEEECCC
Confidence 35677889999999999999988653221111 11112235999999999974 3467999999999999999999999
Q ss_pred CCcHHHHHHHHHcCCCCCCCCeeE------------EeCcEEEEecCCCCCcccHHHHhccCCC-CCHHHHHHHHHHhCc
Q 001580 80 GEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSL 146 (1050)
Q Consensus 80 GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~TV~eni~~g~~-~~~~~~~~~~~~~~l 146 (1050)
|||||||+++|+|+++|++|.+.. ++..|+||||+|++|++||+|||.++.+ .+++++.++++.+++
T Consensus 501 GsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l 580 (694)
T TIGR03375 501 GSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGV 580 (694)
T ss_pred CCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcCh
Confidence 999999999999999999886543 2456999999999999999999999975 678889999999999
Q ss_pred HHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccC
Q 001580 147 QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQ 226 (1050)
Q Consensus 147 ~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~ 226 (1050)
.+.++.+|.|++|.+|++|.+||||||||++|||||+++|++||||||||+||+++++.+.+.+.+. .+++|+|+|||+
T Consensus 581 ~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~-~~~~T~iiItHr 659 (694)
T TIGR03375 581 TEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRW-LAGKTLVLVTHR 659 (694)
T ss_pred HHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-hCCCEEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999987654 357999999999
Q ss_pred cchhhhcCEEEEEcCCeEeeccChhhhhcC
Q 001580 227 LHFLSQVDRIILVHEGMVKEEGTFEDLSNN 256 (1050)
Q Consensus 227 ~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 256 (1050)
++.+..||+|++|++|++++.|+++++.+.
T Consensus 660 l~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 660 TSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 999999999999999999999999988643
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=394.75 Aligned_cols=237 Identities=50% Similarity=0.827 Sum_probs=215.3
Q ss_pred CccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhh
Q 001580 663 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 742 (1050)
Q Consensus 663 ~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~ 742 (1050)
.+.|+++|++++|+.....+++|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+++.
T Consensus 17 ~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~ 96 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSR 96 (257)
T ss_pred CceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhh
Confidence 45699999999997533469999999999999999999999999999999999999999999999999988888888999
Q ss_pred eEEEcCCcccccccHHHhcccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 001580 743 LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 822 (1050)
Q Consensus 743 i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~ 822 (1050)
++|+||++.+|..|+++|+.+........+.++++..++.+++..+|.|+++.+++.+.+||||||||++|||||+++|+
T Consensus 97 i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 176 (257)
T cd03288 97 LSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSS 176 (257)
T ss_pred EEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999997653334556778888889999999999999999999999999999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHH
Q 001580 823 ILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 899 (1050)
Q Consensus 823 illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~ 899 (1050)
+|||||||++||+.++..+.+.|++..+++|+|++||+++.+..||||++|++|++++.|+++++.+..++.|...+
T Consensus 177 llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 253 (257)
T cd03288 177 ILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253 (257)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHH
Confidence 99999999999999999999999987678999999999999988999999999999999999999876555555443
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=391.22 Aligned_cols=231 Identities=37% Similarity=0.603 Sum_probs=208.1
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
++++|++++|+....++++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 46899999996433469999999999999999999999999999999999999999999999999987777778889999
Q ss_pred EcCCcccccccHHHhcccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCEE
Q 001580 746 IPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 824 (1050)
Q Consensus 746 v~Q~~~lf~~tv~~nl~~~~~-~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~il 824 (1050)
+||++.+|..|+.+|+.+... .....+.+.++..++.+++..+|.|+++..+..+.+|||||||||+||||++.+|++|
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 999999998899999976433 2345566677778889999999999999999999999999999999999999999999
Q ss_pred EEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHH
Q 001580 825 VLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSK 897 (1050)
Q Consensus 825 lLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~ 897 (1050)
||||||++||+.++..+.+.|+++.+++|+|++||+++++..||++++|++|++++.|++++++.+. +.|..
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~-~~~~~ 232 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAEN-GLYAY 232 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhcc-ChHHH
Confidence 9999999999999999999999987789999999999999779999999999999999999998763 34443
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-45 Score=411.40 Aligned_cols=256 Identities=29% Similarity=0.510 Sum_probs=224.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCC-CCCCCCCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHH
Q 001580 6 WQVVNANVSLKRMEEFLLAEEKILLPNP-PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKT 84 (1050)
Q Consensus 6 ~~~~~a~~s~~Ri~~fl~~~e~~~~~~~-~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKS 84 (1050)
....+.-.|.+|+.+.+.+++....+++ ...+++ .++++|++|+|+.+ ..++|+|+||++++||++||+|++|||||
T Consensus 301 ~~lgq~~~Sa~Rl~~i~~q~~e~~~~~~~~~~~~~-~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKS 378 (573)
T COG4987 301 QHLGQVIASARRLNDILDQKPEVTFPDEQTATTGQ-ALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKS 378 (573)
T ss_pred HHhhHHHHHHHHHhhhccCCcccCCCccccCCccc-eeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHH
Confidence 4455667788899988888765544422 222333 79999999999853 45899999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCeeE------------EeCcEEEEecCCCCCcccHHHHhccCCCC-CHHHHHHHHHHhCcHHHHh
Q 001580 85 SLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFGSAF-EPARYEKAIDVTSLQHDLD 151 (1050)
Q Consensus 85 TLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~TV~eni~~g~~~-~~~~~~~~~~~~~l~~~~~ 151 (1050)
||+++|+|.++|++|.+.. ++..+++++|.+.+|++|+++|+.++++. .++++.++++..+|.+.+.
T Consensus 379 TllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~ 458 (573)
T COG4987 379 TLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLE 458 (573)
T ss_pred HHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHH
Confidence 9999999999999887543 23369999999999999999999998754 4577888999999999999
Q ss_pred cCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhh
Q 001580 152 LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS 231 (1050)
Q Consensus 152 ~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~ 231 (1050)
..|+|.+|.+||+|..||||||||++|||+|++|.+++||||||.||||.+++.+.+.+... .+|||+|+|||++..++
T Consensus 459 ~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~-~~~kTll~vTHrL~~le 537 (573)
T COG4987 459 SAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEH-AEGKTLLMVTHRLRGLE 537 (573)
T ss_pred hChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHH-hcCCeEEEEecccccHh
Confidence 99999999999999999999999999999999999999999999999999999999977653 35899999999999999
Q ss_pred hcCEEEEEcCCeEeeccChhhhhcChHHHHHHH
Q 001580 232 QVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 264 (1050)
Q Consensus 232 ~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~ 264 (1050)
.+|||++|++|+++++|++++++.+.+.|.++.
T Consensus 538 ~~drIivl~~Gkiie~G~~~~Ll~~~g~~~~l~ 570 (573)
T COG4987 538 RMDRIIVLDNGKIIEEGTHAELLANNGRYKRLY 570 (573)
T ss_pred hcCEEEEEECCeeeecCCHHhhhccccHHHHHh
Confidence 999999999999999999999999888887664
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-45 Score=391.01 Aligned_cols=199 Identities=21% Similarity=0.324 Sum_probs=153.4
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheE
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 744 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 744 (1050)
.+-+.||+|.|++. .+.+++++|-|.--.+++||||||.|||||+++|.|-++|+.|+.+-+ .|-+||
T Consensus 586 vLGlH~VtFgy~gq-kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-----------hrL~iG 653 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQ-KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-----------HRLRIG 653 (807)
T ss_pred eeecccccccCCCC-CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-----------ceeeee
Confidence 47889999999765 479999999999999999999999999999999999999999987654 345799
Q ss_pred EEcCCcc-ccc--ccHHHhcccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhh-cCCCCCChhHHHHHHHHHHHccC
Q 001580 745 IIPQSPV-LFS--GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVS-EAGENFSVGQRQLLSLSRALLRR 820 (1050)
Q Consensus 745 ~v~Q~~~-lf~--~tv~~nl~~~~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~-~~~~~LSgGq~qrl~lArall~~ 820 (1050)
+.-|+.. -++ .|-.+.|.-.-....++.+..|...|+.. +.. -....||||||.||+||-.-++.
T Consensus 654 ~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~s-----------HAHTikikdLSGGQKaRValaeLal~~ 722 (807)
T KOG0066|consen 654 WFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLAS-----------HAHTIKIKDLSGGQKARVALAELALGG 722 (807)
T ss_pred chhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhh-----------ccceEeeeecCCcchHHHHHHHHhcCC
Confidence 9888863 222 36666664221223344555555544432 221 12357999999999999999999
Q ss_pred CCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcC-EEEEEeCCEEEEe-cChhHHh
Q 001580 821 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCD-RILLLDSGRVLEY-DTPEELL 888 (1050)
Q Consensus 821 p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d-~i~vl~~G~i~~~-g~~~el~ 888 (1050)
|+||||||||++||.++...+-++|++ ....||+||||-..+...| ..||+++-.|-+. |..+++.
T Consensus 723 PDvlILDEPTNNLDIESIDALaEAIne--y~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeDYk 790 (807)
T KOG0066|consen 723 PDVLILDEPTNNLDIESIDALAEAINE--YNGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFEDYK 790 (807)
T ss_pred CCEEEecCCCCCcchhhHHHHHHHHHh--ccCcEEEEecccceeeecCceEEEEccCChhhccccHHHHH
Confidence 999999999999999999999999998 4667999999998887632 4666666445433 5555543
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=442.58 Aligned_cols=262 Identities=30% Similarity=0.443 Sum_probs=229.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCC
Q 001580 2 FVVAWQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGE 81 (1050)
Q Consensus 2 ~~~i~~~~~a~~s~~Ri~~fl~~~e~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGs 81 (1050)
...+.++.+++++++|+.++++.++.......+..+....|+++|++|+|++. ++++|+|+||++++|++++|+|+|||
T Consensus 291 ~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGs 369 (571)
T TIGR02203 291 TNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGS 369 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCC
Confidence 34678889999999999999987654321111112222359999999999753 46899999999999999999999999
Q ss_pred cHHHHHHHHHcCCCCCCCCeeE------------EeCcEEEEecCCCCCcccHHHHhccCC--CCCHHHHHHHHHHhCcH
Q 001580 82 GKTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFGS--AFEPARYEKAIDVTSLQ 147 (1050)
Q Consensus 82 GKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~TV~eni~~g~--~~~~~~~~~~~~~~~l~ 147 (1050)
|||||+++|+|+++|++|.+.. .+..|+||||+|++|++|++|||.++. ..+++++.++++.+++.
T Consensus 370 GKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~ 449 (571)
T TIGR02203 370 GKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQ 449 (571)
T ss_pred CHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChH
Confidence 9999999999999999887643 234599999999999999999999985 46778899999999999
Q ss_pred HHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCc
Q 001580 148 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL 227 (1050)
Q Consensus 148 ~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~ 227 (1050)
+.+..+|.|.+|.+|++|.+||||||||++||||++++|+|++||||||+||+++++.+++.+.+. .+++|+|+|||+.
T Consensus 450 ~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~-~~~~tiIiitH~~ 528 (571)
T TIGR02203 450 DFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERL-MQGRTTLVIAHRL 528 (571)
T ss_pred HHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHH-hCCCEEEEEehhh
Confidence 999999999999999999999999999999999999999999999999999999999999988654 3579999999999
Q ss_pred chhhhcCEEEEEcCCeEeeccChhhhhcChHHHHHHHH
Q 001580 228 HFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 265 (1050)
Q Consensus 228 ~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~~ 265 (1050)
+.+..||+|++|++|++++.|+++++.+..+.|+.+..
T Consensus 529 ~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~~ 566 (571)
T TIGR02203 529 STIEKADRIVVMDDGRIVERGTHNELLARNGLYAQLHN 566 (571)
T ss_pred HHHHhCCEEEEEeCCEEEeeCCHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999877777777654
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-44 Score=384.83 Aligned_cols=219 Identities=68% Similarity=1.064 Sum_probs=204.6
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheE
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 744 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 744 (1050)
.++++|++++|+...+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRIS 81 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEE
Confidence 48999999999743346999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEcCCcccccccHHHhcccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCEE
Q 001580 745 IIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 824 (1050)
Q Consensus 745 ~v~Q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~il 824 (1050)
|+||++.+|..|+++|+.++.....+++.++++..++.+++.++|.|+++..++.+.+||||||||++|||||+.+|++|
T Consensus 82 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ll 161 (221)
T cd03244 82 IIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKIL 161 (221)
T ss_pred EECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999989999999876555667788889999999999999999999999999999999999999999999999999
Q ss_pred EEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecC
Q 001580 825 VLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDT 883 (1050)
Q Consensus 825 lLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~ 883 (1050)
||||||++||+.+++.+.+.|+++.++.|+|++||+++.+..||++++|++|++++.|+
T Consensus 162 llDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 162 VLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999998877899999999999998899999999999998876
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=428.93 Aligned_cols=210 Identities=27% Similarity=0.371 Sum_probs=168.6
Q ss_pred EEEEEEEEe--CCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccC--CccEEEECCeecCCCChHHHhhh
Q 001580 667 KFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL--ERGRILIDGFDIAKFGLMDLRKI 742 (1050)
Q Consensus 667 ~~~~v~~~y--~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p--~~G~i~~~g~~i~~~~~~~~r~~ 742 (1050)
...|+.+.- .++.+..|+||+=-++||..+||+|+|||||||||++|+|-..- .+|+|+++|.+..+ ...++.
T Consensus 789 ~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~ 865 (1391)
T KOG0065|consen 789 YWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARV 865 (1391)
T ss_pred EEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccc
Confidence 344444433 23445799999999999999999999999999999999986432 37999999998754 578999
Q ss_pred eEEEcCCcccc-cccHHHhcccC------CCCCHHH----HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 001580 743 LGIIPQSPVLF-SGTVRFNLDPF------SEHSDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 811 (1050)
Q Consensus 743 i~~v~Q~~~lf-~~tv~~nl~~~------~~~~~~~----~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl 811 (1050)
+|||.|++.-. .-||||-|.+. .+.++++ ++++++..++.++ -|..||..|..||..||+||
T Consensus 866 ~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~-------~daiVG~~G~GLs~eQRKrL 938 (1391)
T KOG0065|consen 866 SGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY-------ADALVGLPGSGLSTEQRKRL 938 (1391)
T ss_pred cceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh-------hhhhccCCCCCCCHHHhcee
Confidence 99999999654 44999988642 1222222 4444444444433 24568888899999999999
Q ss_pred HHHHHHccCC-CEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchh--hhhcCEEEEEe-CCEEEEecChhH
Q 001580 812 SLSRALLRRS-KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT--IIDCDRILLLD-SGRVLEYDTPEE 886 (1050)
Q Consensus 812 ~lArall~~p-~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~--~~~~d~i~vl~-~G~i~~~g~~~e 886 (1050)
.||--|+.+| .||+|||||||||+.+...|.+.++++. .|+||+.+-|.++. .+..|+++.|+ .|+.+..|+..+
T Consensus 939 TIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 939 TIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred eEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 9999999999 8899999999999999999999999976 58999999999976 46699999998 699999988654
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=396.38 Aligned_cols=217 Identities=26% Similarity=0.424 Sum_probs=194.9
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheE
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 744 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 744 (1050)
.|+++||+++|++. .+++|+||+|+.||.++|+||||||||||||+|+|+.+|++|+|.++|.++++++|. ++.||
T Consensus 3 ~i~l~~v~K~yg~~--~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~--~R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSF--EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPE--KRGIA 78 (338)
T ss_pred EEEEeeeEEEcCCc--eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--HCCEE
Confidence 38999999999753 299999999999999999999999999999999999999999999999999999985 47899
Q ss_pred EEcCCcccccc-cHHHhcccCCC-------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001580 745 IIPQSPVLFSG-TVRFNLDPFSE-------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 816 (1050)
Q Consensus 745 ~v~Q~~~lf~~-tv~~nl~~~~~-------~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAra 816 (1050)
+|+|+..||.. ||++||.|.-+ ..+.++.++++..++.+++++.| .+||||||||||||||
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaRA 147 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALARA 147 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHHH
Confidence 99999999976 99999986532 23566788888888888887776 5799999999999999
Q ss_pred HccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 001580 817 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 893 (1050)
Q Consensus 817 ll~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~ 893 (1050)
|+++|+++|||||+|+||+..+..+...|+++.+ +.|+|+||||..++.. +|||+||++|+|.+.|+|.|+..++..
T Consensus 148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n 227 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPAN 227 (338)
T ss_pred HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccc
Confidence 9999999999999999999999999999888543 6899999999999877 999999999999999999999987765
Q ss_pred hHH
Q 001580 894 SFS 896 (1050)
Q Consensus 894 ~~~ 896 (1050)
.|.
T Consensus 228 ~fV 230 (338)
T COG3839 228 LFV 230 (338)
T ss_pred hhh
Confidence 443
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=383.19 Aligned_cols=225 Identities=43% Similarity=0.700 Sum_probs=206.6
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheE
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 744 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 744 (1050)
.++++|++++|+.. +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 2 ~l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (229)
T cd03254 2 EIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIG 80 (229)
T ss_pred eEEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEE
Confidence 48999999999632 36999999999999999999999999999999999999999999999999998877777888999
Q ss_pred EEcCCcccccccHHHhcccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 001580 745 IIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 823 (1050)
Q Consensus 745 ~v~Q~~~lf~~tv~~nl~~~~~-~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~i 823 (1050)
|+||++.+|..|+++|+.++.. ....++.++++..++.++++.+|.|+++.++....+||||||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~l 160 (229)
T cd03254 81 VVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKI 160 (229)
T ss_pred EecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999998899999986543 345667778888899999999999999999999999999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001580 824 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 890 (1050)
Q Consensus 824 llLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 890 (1050)
|||||||++||+.+++.+.+.|+++.+++|+|+|||+++.+..||++++|++|++++.|+++++.++
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 161 LILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 9999999999999999999999988678999999999999877999999999999999999888754
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-44 Score=435.56 Aligned_cols=262 Identities=29% Similarity=0.427 Sum_probs=225.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcccC-CCC-CCCCCCCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCC
Q 001580 3 VVAWQVVNANVSLKRMEEFLLAEEKILL-PNP-PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTG 80 (1050)
Q Consensus 3 ~~i~~~~~a~~s~~Ri~~fl~~~e~~~~-~~~-~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nG 80 (1050)
..+..+..++.+++|+.+++..++.... +.. +..+....|+++|++|+|+. ++++|+|+||++++|++++|+|+||
T Consensus 294 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~inl~i~~G~~v~IvG~sG 371 (588)
T PRK13657 294 AFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDN--SRQGVEDVSFEAKPGQTVAIVGPTG 371 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCcCCCCCeEEEEEEEEEeCC--CCceecceeEEECCCCEEEEECCCC
Confidence 3466677888999999999876432111 111 11111235999999999973 3579999999999999999999999
Q ss_pred CcHHHHHHHHHcCCCCCCCCeeE------------EeCcEEEEecCCCCCcccHHHHhccCCC-CCHHHHHHHHHHhCcH
Q 001580 81 EGKTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQ 147 (1050)
Q Consensus 81 sGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~TV~eni~~g~~-~~~~~~~~~~~~~~l~ 147 (1050)
||||||+++|+|+++|++|.+.. ++..|+||||+|.+|++|++|||.++.+ .++++...+++.+++.
T Consensus 372 sGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~ 451 (588)
T PRK13657 372 AGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAH 451 (588)
T ss_pred CCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHH
Confidence 99999999999999999876543 2346999999999999999999999853 4567788899999999
Q ss_pred HHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCc
Q 001580 148 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL 227 (1050)
Q Consensus 148 ~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~ 227 (1050)
+.++.+|+|.+|.+|++|.+||||||||++|||||+++|+|+|||||||+||+++++.+++.+.+. .+++|+|+||||.
T Consensus 452 ~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~-~~~~tvIiitHr~ 530 (588)
T PRK13657 452 DFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDEL-MKGRTTFIIAHRL 530 (588)
T ss_pred HHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH-hcCCEEEEEEecH
Confidence 999999999999999999999999999999999999999999999999999999999999987654 3579999999999
Q ss_pred chhhhcCEEEEEcCCeEeeccChhhhhcChHHHHHHHHHh
Q 001580 228 HFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 267 (1050)
Q Consensus 228 ~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~ 267 (1050)
+.+..+|+|++|++|++++.|+++++....+.|..+...+
T Consensus 531 ~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 570 (588)
T PRK13657 531 STVRNADRILVFDNGRVVESGSFDELVARGGRFAALLRAQ 570 (588)
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHHHHCCChHHHHHHHh
Confidence 9999999999999999999999999988878888877643
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-44 Score=436.43 Aligned_cols=263 Identities=30% Similarity=0.468 Sum_probs=227.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhccc-CCCC--CCCCCCCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcC
Q 001580 2 FVVAWQVVNANVSLKRMEEFLLAEEKIL-LPNP--PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGG 78 (1050)
Q Consensus 2 ~~~i~~~~~a~~s~~Ri~~fl~~~e~~~-~~~~--~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~ 78 (1050)
+..+..+.+++++++|+.++++.++... ...+ ...+....|+++|++|+|+.+.++++|+|+||++++||+++|+|+
T Consensus 295 ~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~ 374 (576)
T TIGR02204 295 SEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGP 374 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECC
Confidence 4567888999999999999998754321 1111 111112359999999999854346899999999999999999999
Q ss_pred CCCcHHHHHHHHHcCCCCCCCCeeE------------EeCcEEEEecCCCCCcccHHHHhccCCC-CCHHHHHHHHHHhC
Q 001580 79 TGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTS 145 (1050)
Q Consensus 79 nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~TV~eni~~g~~-~~~~~~~~~~~~~~ 145 (1050)
||||||||+++|+|+++|.+|.+.. +++.++||||+|++|++||+|||.++.+ .+.++...+++.++
T Consensus 375 sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~ 454 (576)
T TIGR02204 375 SGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAH 454 (576)
T ss_pred CCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcC
Confidence 9999999999999999999876542 2346999999999999999999999864 45678888999999
Q ss_pred cHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEecc
Q 001580 146 LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTN 225 (1050)
Q Consensus 146 l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH 225 (1050)
+.+.++.+|.|.+|.+|++|.+||||||||++||||++++|++||||||||+||+.+++.+++.+.+. .+++|+|+|||
T Consensus 455 l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~-~~~~t~IiitH 533 (576)
T TIGR02204 455 AHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETL-MKGRTTLIIAH 533 (576)
T ss_pred cHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHH-hCCCEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999887665 35899999999
Q ss_pred CcchhhhcCEEEEEcCCeEeeccChhhhhcChHHHHHHHH
Q 001580 226 QLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 265 (1050)
Q Consensus 226 ~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~~ 265 (1050)
+.+.++.+|+|+++++|++++.|+++++.+..+.|+.+..
T Consensus 534 ~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~~~~~~~l~~ 573 (576)
T TIGR02204 534 RLATVLKADRIVVMDQGRIVAQGTHAELIAKGGLYARLAR 573 (576)
T ss_pred chHHHHhCCEEEEEECCEEEeeecHHHHHHcCChHHHHHh
Confidence 9999999999999999999999999999888777877664
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-44 Score=378.02 Aligned_cols=209 Identities=29% Similarity=0.446 Sum_probs=181.7
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheE
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 744 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 744 (1050)
.|+++|++++|+.. ++|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.|.++.+... +.+||
T Consensus 4 ~i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~Ig 78 (254)
T COG1121 4 MIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIG 78 (254)
T ss_pred EEEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEE
Confidence 38999999999754 59999999999999999999999999999999999999999999999988765432 46899
Q ss_pred EEcCCc---ccccccHHHhcccCC-----------CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001580 745 IIPQSP---VLFSGTVRFNLDPFS-----------EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 810 (1050)
Q Consensus 745 ~v~Q~~---~lf~~tv~~nl~~~~-----------~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qr 810 (1050)
||||.. +-|..||+|-+..+. ....+.+.++|+++++.++..+ ....|||||+||
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-----------~i~~LSGGQ~QR 147 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-----------QIGELSGGQKQR 147 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-----------cccccCcHHHHH
Confidence 999976 346779999765431 1124678889999888876554 235799999999
Q ss_pred HHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC-CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001580 811 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 888 (1050)
Q Consensus 811 l~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 888 (1050)
+.|||||+++|++|||||||+|+|+.++..+++.|.++.+ |+|||+||||++.+.. ||+|+.|++ ++++.|++++..
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~-~~~~~G~~~~~~ 226 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNR-HLIASGPPEEVL 226 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcC-eeEeccChhhcc
Confidence 9999999999999999999999999999999999999765 8999999999999877 999999955 899999999987
Q ss_pred hc
Q 001580 889 SN 890 (1050)
Q Consensus 889 ~~ 890 (1050)
..
T Consensus 227 ~~ 228 (254)
T COG1121 227 TE 228 (254)
T ss_pred CH
Confidence 53
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=383.66 Aligned_cols=226 Identities=38% Similarity=0.644 Sum_probs=205.9
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
|+++|++++|++...++++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 46899999996542369999999999999999999999999999999999999999999999999887777778889999
Q ss_pred EcCCcccccccHHHhcccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCEE
Q 001580 746 IPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 824 (1050)
Q Consensus 746 v~Q~~~lf~~tv~~nl~~~~~-~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~il 824 (1050)
+||++.+|..|+++|+.++.. ....++.+.++..++.++++.+|.|+++..+..+.+||||||||++|||||+.+|++|
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 160 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPIL 160 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999998999999986533 2445566677778889999999999999999889999999999999999999999999
Q ss_pred EEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcC
Q 001580 825 VLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNE 891 (1050)
Q Consensus 825 lLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~ 891 (1050)
||||||++||+.++..+.+.|+++.++.|+|++||+++.+..||++++|++|++++.|+++++....
T Consensus 161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 227 (234)
T cd03251 161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQG 227 (234)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcC
Confidence 9999999999999999999999987789999999999999889999999999999999999987653
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-44 Score=396.54 Aligned_cols=248 Identities=28% Similarity=0.470 Sum_probs=220.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHH
Q 001580 6 WQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTS 85 (1050)
Q Consensus 6 ~~~~~a~~s~~Ri~~fl~~~e~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKST 85 (1050)
.|+..|+.|++|+.++|........ .-+++.....+.++++++.-| ..++++++++||++.+|+.++|||||||||||
T Consensus 300 kq~~~Ar~s~~Rl~~lL~~~p~~~~-~m~LP~P~g~L~Ve~l~~~PP-g~~~pil~~isF~l~~G~~lgIIGPSgSGKST 377 (580)
T COG4618 300 KQFVAARQSYKRLNELLAELPAAAE-RMPLPAPQGALSVERLTAAPP-GQKKPILKGISFALQAGEALGIIGPSGSGKST 377 (580)
T ss_pred HHHHHHHHHHHHHHHHHHhCccccC-CCCCCCCCceeeEeeeeecCC-CCCCcceecceeEecCCceEEEECCCCccHHH
Confidence 4789999999999999997542221 122222234589999999776 44689999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCCeeE------------EeCcEEEEecCCCCCcccHHHHhc-cCCCCCHHHHHHHHHHhCcHHHHhc
Q 001580 86 LISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNIL-FGSAFEPARYEKAIDVTSLQHDLDL 152 (1050)
Q Consensus 86 Ll~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~TV~eni~-~g~~~~~~~~~~~~~~~~l~~~~~~ 152 (1050)
|.|+|.|..+|.+|.+.. ..++|||+||+-.||++||.|||. |+...+.+++.++.+.++.++-+-.
T Consensus 378 LaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~ 457 (580)
T COG4618 378 LARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILR 457 (580)
T ss_pred HHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHh
Confidence 999999999999887642 234699999999999999999996 7767788888899999999999999
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh
Q 001580 153 LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ 232 (1050)
Q Consensus 153 ~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~ 232 (1050)
+|+||+|.||++|.+|||||||||+||||||.+|.+++||||.|+||.+.+..+.+.+...+.+|.|+|+|||+.+.+..
T Consensus 458 lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~ 537 (580)
T COG4618 458 LPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALAS 537 (580)
T ss_pred CcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999988888899999999999999999
Q ss_pred cCEEEEEcCCeEeeccChhhhhc
Q 001580 233 VDRIILVHEGMVKEEGTFEDLSN 255 (1050)
Q Consensus 233 ~d~i~~l~~G~i~~~g~~~~l~~ 255 (1050)
+|+|.+|++|++..-|+.+|++.
T Consensus 538 ~Dkilvl~~G~~~~FG~r~eVLa 560 (580)
T COG4618 538 VDKILVLQDGRIAAFGPREEVLA 560 (580)
T ss_pred cceeeeecCChHHhcCCHHHHHH
Confidence 99999999999988888877653
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=431.76 Aligned_cols=262 Identities=27% Similarity=0.469 Sum_probs=227.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCc
Q 001580 3 VVAWQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEG 82 (1050)
Q Consensus 3 ~~i~~~~~a~~s~~Ri~~fl~~~e~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsG 82 (1050)
.++..+..++++.+||.++++.++.......+.++....|+++|++|+|+. +++++|+|+||++++|++++|+||||||
T Consensus 275 ~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~-~~~~~l~~i~~~i~~G~~~~ivG~sGsG 353 (569)
T PRK10789 275 WMFNIVERGSAAYSRIRAMLAEAPVVKDGSEPVPEGRGELDVNIRQFTYPQ-TDHPALENVNFTLKPGQMLGICGPTGSG 353 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCCCCCcEEEEEEEEECCC-CCCccccCeeEEECCCCEEEEECCCCCC
Confidence 456788899999999999998754221111111112235999999999974 3467999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCeeE------------EeCcEEEEecCCCCCcccHHHHhccCC-CCCHHHHHHHHHHhCcHHH
Q 001580 83 KTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFGS-AFEPARYEKAIDVTSLQHD 149 (1050)
Q Consensus 83 KSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~TV~eni~~g~-~~~~~~~~~~~~~~~l~~~ 149 (1050)
||||+++|+|+++|++|.+.. ++..++||+|+|++|++|++|||.++. ...++++..+++.+++.++
T Consensus 354 KSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~ 433 (569)
T PRK10789 354 KSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDD 433 (569)
T ss_pred HHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHH
Confidence 999999999999999887543 234699999999999999999999985 3567788888999999999
Q ss_pred HhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcch
Q 001580 150 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHF 229 (1050)
Q Consensus 150 ~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~ 229 (1050)
+..+|.|++|.+|++|.+||||||||++|||||+++|+++||||||++||+++++.+++.+.+. .+|+|+|+|||+++.
T Consensus 434 i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~-~~~~tii~itH~~~~ 512 (569)
T PRK10789 434 ILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQW-GEGRTVIISAHRLSA 512 (569)
T ss_pred HHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHH-hCCCEEEEEecchhH
Confidence 9999999999999999999999999999999999999999999999999999999999987664 368999999999999
Q ss_pred hhhcCEEEEEcCCeEeeccChhhhhcChHHHHHHHHH
Q 001580 230 LSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 266 (1050)
Q Consensus 230 l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~~~ 266 (1050)
+..+|+|++|++|++++.|+++++.+..+.|+.+...
T Consensus 513 ~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~ 549 (569)
T PRK10789 513 LTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRY 549 (569)
T ss_pred HHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHH
Confidence 9999999999999999999999999888888887764
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-44 Score=372.38 Aligned_cols=197 Identities=27% Similarity=0.385 Sum_probs=171.1
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheE
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 744 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 744 (1050)
.+++++|+++|+. ..+|+|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.... ..++
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~-----~~~~ 75 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPG-----PDIG 75 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCC-----CCEE
Confidence 3899999999976 37999999999999999999999999999999999999999999999999885433 4799
Q ss_pred EEcCCcccccc-cHHHhcccCCCC-------CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001580 745 IIPQSPVLFSG-TVRFNLDPFSEH-------SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 816 (1050)
Q Consensus 745 ~v~Q~~~lf~~-tv~~nl~~~~~~-------~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAra 816 (1050)
||+|++.||.. ||++|+.+.-+. ..+.+.+.++.+++.++-++.| .+||||||||++||||
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiARA 144 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIARA 144 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHHH
Confidence 99999999997 999999764321 2234556666666666655554 6899999999999999
Q ss_pred HccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeC--CEEE
Q 001580 817 LLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDS--GRVL 879 (1050)
Q Consensus 817 ll~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~--G~i~ 879 (1050)
|+.+|+|||||||+++||+.|+..+++.|.++. .++||++||||.+++-. +|||+||.+ |+|.
T Consensus 145 L~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 145 LATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred HhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 999999999999999999999999999998865 36999999999999766 999999998 5553
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=398.66 Aligned_cols=217 Identities=28% Similarity=0.428 Sum_probs=193.8
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheE
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 744 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 744 (1050)
.++++||+++|++ ..+++|+||+|++||+++|+|||||||||+|++|+|+..|++|+|.++|+++..+++ .++.||
T Consensus 5 ~l~i~~v~k~yg~--~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp--~kR~ig 80 (352)
T COG3842 5 ALEIRNVSKSFGD--FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPP--EKRPIG 80 (352)
T ss_pred eEEEEeeeeecCC--eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh--hhcccc
Confidence 4999999999973 479999999999999999999999999999999999999999999999999999887 567899
Q ss_pred EEcCCcccccc-cHHHhcccCCC----CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001580 745 IIPQSPVLFSG-TVRFNLDPFSE----HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 815 (1050)
Q Consensus 745 ~v~Q~~~lf~~-tv~~nl~~~~~----~~----~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAr 815 (1050)
+|+|+..||.. ||++|+.|+-. .. .+++.++++..++.++..+.| .+|||||||||||||
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVALAR 149 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVALAR 149 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHHHH
Confidence 99999999976 99999987533 12 236777888877777766665 689999999999999
Q ss_pred HHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 001580 816 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 892 (1050)
Q Consensus 816 all~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~ 892 (1050)
||..+|++||||||.|+||..-+..++..|+++. .|.|.|+||||-++... +|||+||++|+|...|+|+|+...+.
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~ 229 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPA 229 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcc
Confidence 9999999999999999999999999999888754 37999999999998766 99999999999999999999998776
Q ss_pred ChHH
Q 001580 893 SSFS 896 (1050)
Q Consensus 893 ~~~~ 896 (1050)
..|.
T Consensus 230 ~~fV 233 (352)
T COG3842 230 TRFV 233 (352)
T ss_pred hHHH
Confidence 5544
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-44 Score=402.08 Aligned_cols=219 Identities=26% Similarity=0.422 Sum_probs=186.2
Q ss_pred EEEEEEEEEeCCC--CCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHH---Hh
Q 001580 666 IKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LR 740 (1050)
Q Consensus 666 i~~~~v~~~y~~~--~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~---~r 740 (1050)
|+++||+++|+.+ ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..+++.+ .|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999632 236999999999999999999999999999999999999999999999999998877654 47
Q ss_pred hheEEEcCCccccc-ccHHHhcccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001580 741 KILGIIPQSPVLFS-GTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 812 (1050)
Q Consensus 741 ~~i~~v~Q~~~lf~-~tv~~nl~~~~---~~~~----~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~ 812 (1050)
++|||+||++.+|. .|+++|+.+.. .... +++.++++..++. ......+.+||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~-----------~~~~~~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLG-----------DKHDSYPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-----------hhhhCChhhCCHHHHHHHH
Confidence 78999999999986 59999997421 1122 2234444444443 3344555789999999999
Q ss_pred HHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001580 813 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889 (1050)
Q Consensus 813 lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 889 (1050)
|||||+.+|++|||||||++||+.+...+++.|+++.+ +.|||+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999999753 7899999999999977 99999999999999999999987
Q ss_pred cCCChH
Q 001580 890 NEGSSF 895 (1050)
Q Consensus 890 ~~~~~~ 895 (1050)
.+...+
T Consensus 231 ~p~~~~ 236 (343)
T TIGR02314 231 HPKTPL 236 (343)
T ss_pred CCCcHH
Confidence 654333
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=364.01 Aligned_cols=222 Identities=31% Similarity=0.477 Sum_probs=185.4
Q ss_pred cEEEEEEEEEeCCCC--CCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCCh-HHHhh
Q 001580 665 SIKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL-MDLRK 741 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~--~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~-~~~r~ 741 (1050)
.++++|+++.|+.+. .++|+||||+|.+||++||+|+||||||||.++|+|+.+|++|+|.++|.++....+ ...++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 489999999997541 149999999999999999999999999999999999999999999999987765432 35677
Q ss_pred heEEEcCCccc-cc--ccHHHhcc-cCC----CCCHHHHHHHHHHhcHH-HHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001580 742 ILGIIPQSPVL-FS--GTVRFNLD-PFS----EHSDADLWEALERAHLK-DAIRRNSLGLDAQVSEAGENFSVGQRQLLS 812 (1050)
Q Consensus 742 ~i~~v~Q~~~l-f~--~tv~~nl~-~~~----~~~~~~~~~~l~~~~~~-~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~ 812 (1050)
.+.+|||||.- ++ .||++-|. +.. .....++.++++.+++. +++.+.| ..|||||+||+|
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence 89999999952 33 27777663 211 12344577777777764 4444444 679999999999
Q ss_pred HHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001580 813 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889 (1050)
Q Consensus 813 lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 889 (1050)
|||||.-+|++||||||||+||+-..+.|++.|.++.+ +-|.|+||||+..+.. ||||+||++|+++|.++.+++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 99999999999999999999999999999999998765 4599999999999988 99999999999999999999987
Q ss_pred cCCChHHH
Q 001580 890 NEGSSFSK 897 (1050)
Q Consensus 890 ~~~~~~~~ 897 (1050)
.....|.+
T Consensus 232 ~~~h~ytr 239 (252)
T COG1124 232 HPSHPYTR 239 (252)
T ss_pred CCccHHHH
Confidence 64444544
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=439.14 Aligned_cols=261 Identities=28% Similarity=0.436 Sum_probs=228.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcccCCC-CCCCCCCCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCC
Q 001580 3 VVAWQVVNANVSLKRMEEFLLAEEKILLPN-PPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGE 81 (1050)
Q Consensus 3 ~~i~~~~~a~~s~~Ri~~fl~~~e~~~~~~-~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGs 81 (1050)
.++..+.+++++++|+.++++.++...... .+.+.....|+++|++|+|+.. ++++|+|+||++++|++++|+|+|||
T Consensus 416 ~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGs 494 (694)
T TIGR01846 416 QLWQDFQQTGIALERLGDILNSPTEPRSAGLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGS 494 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCC
Confidence 456788899999999999998765322111 1111112359999999999743 45799999999999999999999999
Q ss_pred cHHHHHHHHHcCCCCCCCCeeE------------EeCcEEEEecCCCCCcccHHHHhccCCC-CCHHHHHHHHHHhCcHH
Q 001580 82 GKTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQH 148 (1050)
Q Consensus 82 GKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~TV~eni~~g~~-~~~~~~~~~~~~~~l~~ 148 (1050)
|||||+++|+|+++|++|.+.. ++..|+||||+|.+|++||+|||.++.+ .+.++..++++.+++.+
T Consensus 495 GKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~ 574 (694)
T TIGR01846 495 GKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHD 574 (694)
T ss_pred CHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHH
Confidence 9999999999999999886542 2346999999999999999999999753 55778888999999999
Q ss_pred HHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcc
Q 001580 149 DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLH 228 (1050)
Q Consensus 149 ~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~ 228 (1050)
.++.+|.|.+|.+|++|.+||||||||++|||||+++|++|||||||++||+.+++.+.+.+.+. .+++|+|+|||+++
T Consensus 575 ~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~-~~~~t~i~itH~~~ 653 (694)
T TIGR01846 575 FISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREI-CRGRTVIIIAHRLS 653 (694)
T ss_pred HHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHH-hCCCEEEEEeCChH
Confidence 99999999999999999999999999999999999999999999999999999999999988765 36899999999999
Q ss_pred hhhhcCEEEEEcCCeEeeccChhhhhcChHHHHHHHH
Q 001580 229 FLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 265 (1050)
Q Consensus 229 ~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~~ 265 (1050)
.+..||+|++|++|+++++|+++++.+..+.|+.+..
T Consensus 654 ~~~~~d~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~ 690 (694)
T TIGR01846 654 TVRACDRIIVLEKGQIAESGRHEELLALQGLYARLWQ 690 (694)
T ss_pred HHHhCCEEEEEeCCEEEEeCCHHHHHHcCChHHHHHH
Confidence 9999999999999999999999999988888988775
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-44 Score=389.77 Aligned_cols=261 Identities=26% Similarity=0.472 Sum_probs=228.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcc-cCCC-CCCCCCCCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCc
Q 001580 5 AWQVVNANVSLKRMEEFLLAEEKI-LLPN-PPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEG 82 (1050)
Q Consensus 5 i~~~~~a~~s~~Ri~~fl~~~e~~-~~~~-~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsG 82 (1050)
.-++.++.+-+.|+-|.|++|+.. +.|+ +|.....-.|+++|++|.|+ +++|+|+||||++.+|+.+|+|||+|+|
T Consensus 499 YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaG 576 (790)
T KOG0056|consen 499 YRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAG 576 (790)
T ss_pred HHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCc
Confidence 345678899999999999987543 4454 33333334599999999997 4689999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCeeE------------EeCcEEEEecCCCCCcccHHHHhccCCCC-CHHHHHHHHHHhCcHHH
Q 001580 83 KTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFGSAF-EPARYEKAIDVTSLQHD 149 (1050)
Q Consensus 83 KSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~TV~eni~~g~~~-~~~~~~~~~~~~~l~~~ 149 (1050)
|||++++|..+++..+|.+.. .|+.||+||||..||+.||..||.++.+. ..+++.++.+++++++.
T Consensus 577 KSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdr 656 (790)
T KOG0056|consen 577 KSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDR 656 (790)
T ss_pred hhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHH
Confidence 999999999999988876543 35569999999999999999999999754 34667778899999999
Q ss_pred HhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcch
Q 001580 150 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHF 229 (1050)
Q Consensus 150 ~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~ 229 (1050)
+-.+|.|+.|.+||+|-.||||+|||||+||+++..|.+++|||.||+||..+++.|...+.+.. .++|.|+|.|+++.
T Consensus 657 Il~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlc-a~RTtIVvAHRLST 735 (790)
T KOG0056|consen 657 ILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLC-ANRTTIVVAHRLST 735 (790)
T ss_pred HhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHh-cCCceEEEeeeehh
Confidence 99999999999999999999999999999999999999999999999999999999977665543 57999999999999
Q ss_pred hhhcCEEEEEcCCeEeeccChhhhhcC-hHHHHHHHHHhh
Q 001580 230 LSQVDRIILVHEGMVKEEGTFEDLSNN-GELFQKLMENAG 268 (1050)
Q Consensus 230 l~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~l~~~~~ 268 (1050)
+-+||.|+++++|+|++.|+++|+..+ ++.|+.++..+.
T Consensus 736 ivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~qq 775 (790)
T KOG0056|consen 736 IVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQAQQ 775 (790)
T ss_pred eecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHHHH
Confidence 999999999999999999999999877 889999996543
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-43 Score=378.15 Aligned_cols=224 Identities=43% Similarity=0.712 Sum_probs=205.1
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
++++|++++|+++ ..+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4689999999643 369999999999999999999999999999999999999999999999999988888788889999
Q ss_pred EcCCcccccccHHHhcccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCEE
Q 001580 746 IPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 824 (1050)
Q Consensus 746 v~Q~~~lf~~tv~~nl~~~~~-~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~il 824 (1050)
+||++.+|+.|+++|+.+... ..+..+.+.++..++.+.+..+|.|+++.+.....+||||||||++|||||+++|++|
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999976432 3455667778888899999999999999999999999999999999999999999999
Q ss_pred EEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001580 825 VLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 890 (1050)
Q Consensus 825 lLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 890 (1050)
||||||++||+.+...+.+.|.+..++.|+|++||+++.+..||++++|++|++++.|+++++...
T Consensus 160 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~ 225 (236)
T cd03253 160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK 225 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc
Confidence 999999999999999999999987668899999999999988999999999999999999988764
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-43 Score=424.88 Aligned_cols=251 Identities=27% Similarity=0.406 Sum_probs=217.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCc
Q 001580 3 VVAWQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEG 82 (1050)
Q Consensus 3 ~~i~~~~~a~~s~~Ri~~fl~~~e~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsG 82 (1050)
..+..+.++++|++|+.++++.++.... ..+.++....|+++|++|+|+.. ++++|+|+||++++|++++|+|+||||
T Consensus 279 ~~~~~~~~~~~~~~ri~~~l~~~~~~~~-~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsG 356 (544)
T TIGR01842 279 GGWKQFSGARQAYKRLNELLANYPSRDP-AMPLPEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSG 356 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCccccC-CCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCC
Confidence 4667788999999999999987653221 11111122359999999999742 358999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCeeE------------EeCcEEEEecCCCCCcccHHHHhccCCC-CCHHHHHHHHHHhCcHHH
Q 001580 83 KTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHD 149 (1050)
Q Consensus 83 KSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~TV~eni~~g~~-~~~~~~~~~~~~~~l~~~ 149 (1050)
||||+++|+|+++|++|.+.. .+..++||||+|++|++|++||+.++.+ .+++++..+++.+++.+.
T Consensus 357 KSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~ 436 (544)
T TIGR01842 357 KSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHEL 436 (544)
T ss_pred HHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHH
Confidence 999999999999999886542 2346999999999999999999986643 567788888999999999
Q ss_pred HhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcch
Q 001580 150 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHF 229 (1050)
Q Consensus 150 ~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~ 229 (1050)
++.+|.|++|.+|++|.+||||||||++|||||+++|++|||||||++||+++++.+.+.+.+...+|+|+|++||+++.
T Consensus 437 i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~ 516 (544)
T TIGR01842 437 ILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSL 516 (544)
T ss_pred HHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999876654468999999999999
Q ss_pred hhhcCEEEEEcCCeEeeccChhhhhc
Q 001580 230 LSQVDRIILVHEGMVKEEGTFEDLSN 255 (1050)
Q Consensus 230 l~~~d~i~~l~~G~i~~~g~~~~l~~ 255 (1050)
++.||+|++|++|++++.|+++++.+
T Consensus 517 ~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 517 LGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred HHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 98899999999999999999988753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-44 Score=349.85 Aligned_cols=206 Identities=28% Similarity=0.429 Sum_probs=185.7
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHH---Hhhh
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LRKI 742 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~---~r~~ 742 (1050)
|+|+||+++|+.+ +++|+||||+|++||.+-|+||||||||||+|+|.+..+|++|+|.++|.|+.++...+ +|++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 7899999999876 57999999999999999999999999999999999999999999999999998877654 7999
Q ss_pred eEEEcCCcccccc-cHHHhcccCC-------CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001580 743 LGIIPQSPVLFSG-TVRFNLDPFS-------EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 814 (1050)
Q Consensus 743 i~~v~Q~~~lf~~-tv~~nl~~~~-------~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lA 814 (1050)
||+|+||.-|... ||.||+.+.- .....++.++|+.+++.+-...+| .+||||||||++||
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaIA 149 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAIA 149 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHHH
Confidence 9999999987755 9999997531 123466888899999988888887 57999999999999
Q ss_pred HHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecC
Q 001580 815 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 883 (1050)
Q Consensus 815 rall~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~ 883 (1050)
||++++|++||-||||-+|||++...|++.+.+.. .|.|||+.|||.+.+.. -.|++.+++|+++....
T Consensus 150 RAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 150 RAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 99999999999999999999999999999998864 58999999999999988 78999999999987543
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-44 Score=353.69 Aligned_cols=217 Identities=26% Similarity=0.454 Sum_probs=186.0
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
+++.+++++|++. ..+++||||+++.||++||+|||||||||+|++|++++.|++|.|++||.|+.+ .|...|++||+
T Consensus 2 l~v~~l~K~y~~~-v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGSK-VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccCH-HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcce
Confidence 6889999999763 359999999999999999999999999999999999999999999999999977 55789999999
Q ss_pred EcCCcccccc-cHHHhcccCCCC---CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 001580 746 IPQSPVLFSG-TVRFNLDPFSEH---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 821 (1050)
Q Consensus 746 v~Q~~~lf~~-tv~~nl~~~~~~---~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p 821 (1050)
++-+..++.. |++|||.++... .+.++. +.+.+...+ .++......+..+||-|+||||+|||||+++|
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~k-----ari~~l~k~--l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P 152 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIK-----ARIAELSKR--LQLLEYLDRRVGEFSTGMKQKVAIARALVHDP 152 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHH-----HHHHHHHHH--hChHHHHHHHHhhhchhhHHHHHHHHHHhcCC
Confidence 9988888865 999999876431 222211 122223333 24555555566789999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHHcC-CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 001580 822 KILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 891 (1050)
Q Consensus 822 ~illLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~ 891 (1050)
++++|||||||||..+.+.+++.+.+... |++||+.||.|++++. ||||+++++|+++..|+++++.++.
T Consensus 153 ~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~ 224 (245)
T COG4555 153 SILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDART 224 (245)
T ss_pred CeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHH
Confidence 99999999999999999999999999765 8999999999999997 9999999999999999999998653
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-43 Score=374.58 Aligned_cols=218 Identities=37% Similarity=0.596 Sum_probs=197.5
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheE
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 744 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 744 (1050)
.++++|+++.|+....++++|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++...++..+++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 48999999999643246999999999999999999999999999999999999999999999999988777777788999
Q ss_pred EEcCCcccccccHHHhcccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 001580 745 IIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 823 (1050)
Q Consensus 745 ~v~Q~~~lf~~tv~~nl~~~~~-~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~i 823 (1050)
|+||++.+|..|+.+|+.+... ....++.+.++..++.+.+..+|.|+++.+.+...+||||||||++||||++.+|++
T Consensus 82 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~l 161 (220)
T cd03245 82 YVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPI 161 (220)
T ss_pred EeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999888899999976432 244567778888899999999999999998888899999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEec
Q 001580 824 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYD 882 (1050)
Q Consensus 824 llLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g 882 (1050)
|||||||++||+.+...+++.|+++.+++|+|++||+++.++.||++++|++|++++.|
T Consensus 162 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 162 LLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 99999999999999999999999976668999999999988669999999999998754
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=375.51 Aligned_cols=214 Identities=29% Similarity=0.509 Sum_probs=192.2
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecC-CCChHHHhhhe
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA-KFGLMDLRKIL 743 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~-~~~~~~~r~~i 743 (1050)
.++++|++|+|+++ .++|+++||+|++||.++|+|+||||||||+++|.|+++|++|+|.++|.++. ..+...+|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 38899999999766 58999999999999999999999999999999999999999999999999988 47788899999
Q ss_pred EEEcCCc--ccccccHHHhcccCCC---CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001580 744 GIIPQSP--VLFSGTVRFNLDPFSE---HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 814 (1050)
Q Consensus 744 ~~v~Q~~--~lf~~tv~~nl~~~~~---~~----~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lA 814 (1050)
|||+|+| .+|..||.+.+.|+.. .. +.++.++++.+++.++.++.| .+|||||||||+||
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaIA 150 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAIA 150 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHhh
Confidence 9999999 6889999999987542 12 344667777777777655544 57999999999999
Q ss_pred HHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001580 815 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890 (1050)
Q Consensus 815 rall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 890 (1050)
.+|+.+|++|||||||++||+...+.+.+.++++.+ ++|+|++|||++.+.. |||+++|++|+++.+|+|.++.++
T Consensus 151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 999999999999999999999999999999999764 4799999999999988 999999999999999999998764
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=377.92 Aligned_cols=225 Identities=41% Similarity=0.660 Sum_probs=203.1
Q ss_pred EEEEEEEEEeCCC-CCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheE
Q 001580 666 IKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 744 (1050)
Q Consensus 666 i~~~~v~~~y~~~-~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 744 (1050)
++++|++++|++. ..++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4689999999642 236999999999999999999999999999999999999999999999999988777777788899
Q ss_pred EEcCCcccccccHHHhcccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 001580 745 IIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 823 (1050)
Q Consensus 745 ~v~Q~~~lf~~tv~~nl~~~~~-~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~i 823 (1050)
|+||++.+|..|+++|+.+... ....++.+.++..++.+++..+|.|+++..+....+||||||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999998899999976432 234556667777788899999999999999988999999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001580 824 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 890 (1050)
Q Consensus 824 llLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 890 (1050)
|||||||++||+.+++.+.+.|+++.+++|+|++||+++++..||++++|++|++++.|+.+++...
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc
Confidence 9999999999999999999999987678999999999999988999999999999999999888754
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-43 Score=356.80 Aligned_cols=213 Identities=28% Similarity=0.413 Sum_probs=183.8
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCC---hHHHhh
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LMDLRK 741 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~---~~~~r~ 741 (1050)
.|+++||+++|+++ +.+|+||||+|++||+++|+||||||||||+++|.|+.+|++|+|.++|.++.+.. .+.+|+
T Consensus 3 ~i~~~nl~k~yp~~-~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYPGG-HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecCCC-ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 48999999999744 47999999999999999999999999999999999999999999999999998887 445688
Q ss_pred heEEEcCCcccccc-cHHHhcccC------------CCCCHHH---HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCCh
Q 001580 742 ILGIIPQSPVLFSG-TVRFNLDPF------------SEHSDAD---LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSV 805 (1050)
Q Consensus 742 ~i~~v~Q~~~lf~~-tv~~nl~~~------------~~~~~~~---~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSg 805 (1050)
+||+++|++.|-+. ||.+|+..+ .-.+.++ ..++|++.+ +....-.+..+|||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervg-----------i~~~A~qra~~LSG 150 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVG-----------ILDKAYQRASTLSG 150 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcC-----------cHHHHHHHhccCCc
Confidence 89999999998865 999998432 1223333 334444444 44444556678999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001580 806 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 882 (1050)
Q Consensus 806 Gq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 882 (1050)
||+|||+|||||+++|+|+|-|||+++|||.+.+.+++.|++.. .|.|+|+.-|+++.+.+ ||||+-|++|+|+..|
T Consensus 151 GQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 151 GQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG 230 (258)
T ss_pred chhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeC
Confidence 99999999999999999999999999999999999999999864 57999999999999977 9999999999999999
Q ss_pred ChhHHhh
Q 001580 883 TPEELLS 889 (1050)
Q Consensus 883 ~~~el~~ 889 (1050)
+++|+-+
T Consensus 231 ~~~el~~ 237 (258)
T COG3638 231 PASELTD 237 (258)
T ss_pred ChhhhhH
Confidence 9999643
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-43 Score=362.82 Aligned_cols=204 Identities=29% Similarity=0.412 Sum_probs=170.9
Q ss_pred EEEEEEEEEeCCCC--CCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHH---H-
Q 001580 666 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---L- 739 (1050)
Q Consensus 666 i~~~~v~~~y~~~~--~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~---~- 739 (1050)
++++||++.|..+. ..+|+++||+|++||.++|+|||||||||||++|.|+..|++|.|.++|.|+..++... +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999996432 36999999999999999999999999999999999999999999999999999888544 3
Q ss_pred hhheEEEcCCcccccc-cHHHhccc---CCCCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 001580 740 RKILGIIPQSPVLFSG-TVRFNLDP---FSEHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 811 (1050)
Q Consensus 740 r~~i~~v~Q~~~lf~~-tv~~nl~~---~~~~~----~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl 811 (1050)
|++||||+|+..|... |++||+.+ +.... .....+.++..++.+... ...+.+|||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~----------~~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL----------KKKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc----------cCCchhcCHHHHHHH
Confidence 5569999999998876 99999973 22221 122333333334433222 144578999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhhcCEEEEEeCCEEE
Q 001580 812 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVL 879 (1050)
Q Consensus 812 ~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~ 879 (1050)
||||||+.+|+|+|.||||.+||.++.+.|++.+++.. .|+|+|+||||......|||++.|.+|++.
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 99999999999999999999999999999999999974 378999999999999999999999999953
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-43 Score=379.28 Aligned_cols=216 Identities=29% Similarity=0.457 Sum_probs=181.3
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCCh---HHHhhh
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL---MDLRKI 742 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~---~~~r~~ 742 (1050)
++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...++ ..+|+.
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGGR--TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 4689999999643 69999999999999999999999999999999999999999999999999887664 457888
Q ss_pred eEEEcCCcccccc-cHHHhcccCC----CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHH
Q 001580 743 LGIIPQSPVLFSG-TVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 817 (1050)
Q Consensus 743 i~~v~Q~~~lf~~-tv~~nl~~~~----~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAral 817 (1050)
|+|+||++.+|.. |+++|+.+.. .....+..+ .+.+.++.+ |+.........+||||||||++|||||
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~ia~al 151 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIRE-----IVLEKLEAV--GLRGAEDLYPAELSGGMKKRVALARAL 151 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 9999999999876 9999996531 112222111 112233332 444444555678999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001580 818 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890 (1050)
Q Consensus 818 l~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 890 (1050)
+.+|+||||||||++||+.++..+.+.|+++.+ ++|||+|||+++++.. ||+|++|++|++++.|+++++...
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 152 ALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 999999999999999999999999999998653 7899999999999876 999999999999999999998753
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-43 Score=340.50 Aligned_cols=209 Identities=29% Similarity=0.430 Sum_probs=187.4
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
+.+++|.|+|.. .=-.++++|++||++||+||||||||||+|+|+||..|.+|+|.++|+|....+| .++-+++
T Consensus 2 l~L~~V~~~y~~----~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P--~~RPVSm 75 (231)
T COG3840 2 LALDDVRFSYGH----LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPP--AERPVSM 75 (231)
T ss_pred ccccceEEeeCc----ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCc--ccCChhh
Confidence 567899999963 2246789999999999999999999999999999999999999999999988777 4567999
Q ss_pred EcCCcccccc-cHHHhcccCC----CC---CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHH
Q 001580 746 IPQSPVLFSG-TVRFNLDPFS----EH---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 817 (1050)
Q Consensus 746 v~Q~~~lf~~-tv~~nl~~~~----~~---~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAral 817 (1050)
++|+..||.. ||.+|+.++- +. ..+.+..++.++|+.++..++| .+||||||||++|||+|
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----------~~LSGGqRQRvALARcl 144 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----------GELSGGQRQRVALARCL 144 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc-----------cccCchHHHHHHHHHHH
Confidence 9999999987 9999997542 11 2456888999999999999998 47999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 001580 818 LRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 891 (1050)
Q Consensus 818 l~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~ 891 (1050)
+++-+||+||||+|+|||.-+..+...+.++. ++.|+++|||.++.+.. +|+++++++|||.+.|..+++.+..
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~ 221 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK 221 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccC
Confidence 99999999999999999999999999998865 46899999999999887 9999999999999999999998754
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=378.28 Aligned_cols=183 Identities=24% Similarity=0.358 Sum_probs=138.9
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
++..+++++|++- .|.-=.=+|..||++|++||||-||||++++|+|.++|++|. ..+ -+++|
T Consensus 343 v~y~~~~k~~g~F---~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~vSy 405 (591)
T COG1245 343 VEYPDLKKTYGDF---KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKVSY 405 (591)
T ss_pred eecchheeecCce---EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceEee
Confidence 4445555555421 222222345667899999999999999999999999999998 222 26899
Q ss_pred EcCCcc-cccccHHHhcccCCC--CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 001580 746 IPQSPV-LFSGTVRFNLDPFSE--HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 822 (1050)
Q Consensus 746 v~Q~~~-lf~~tv~~nl~~~~~--~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~ 822 (1050)
-||--. -|++||++-|.-... ..+.- ....+. .|..++..+......|||||.|||+||.+|.++++
T Consensus 406 KPQyI~~~~~gtV~~~l~~~~~~~~~~s~---------~~~ei~-~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reAD 475 (591)
T COG1245 406 KPQYISPDYDGTVEDLLRSAIRSAFGSSY---------FKTEIV-KPLNLEDLLERPVDELSGGELQRVAIAAALSREAD 475 (591)
T ss_pred cceeecCCCCCcHHHHHHHhhhhhcccch---------hHHhhc-CccchHHHHhcccccCCchhHHHHHHHHHhccccC
Confidence 999763 478899986632110 11111 111111 26677777777778999999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeC
Q 001580 823 ILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDS 875 (1050)
Q Consensus 823 illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~ 875 (1050)
++|||||++.||.+.+-.+-+.|++.. .++|.++|-||+..+.. +||++|++.
T Consensus 476 lYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 476 LYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred EEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 999999999999999999999999865 46899999999999988 999999963
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=421.79 Aligned_cols=261 Identities=25% Similarity=0.383 Sum_probs=224.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcccCC-CC-CCCCCCCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCC
Q 001580 3 VVAWQVVNANVSLKRMEEFLLAEEKILLP-NP-PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTG 80 (1050)
Q Consensus 3 ~~i~~~~~a~~s~~Ri~~fl~~~e~~~~~-~~-~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nG 80 (1050)
.++..+..++++++|+.++++.++....+ .+ +.+.....|+++|++|+|+. ++++|+|+||++++|++++|+|+||
T Consensus 294 ~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~i~~~i~~G~~~~ivG~sG 371 (585)
T TIGR01192 294 GFITQIFEARAKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFAN--SSQGVFDVSFEAKAGQTVAIVGPTG 371 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccCCccCCCCCCCCCeEEEEEEEEECCC--CCccccceeEEEcCCCEEEEECCCC
Confidence 45677789999999999999865322111 11 11112235999999999973 2468999999999999999999999
Q ss_pred CcHHHHHHHHHcCCCCCCCCeeE------------EeCcEEEEecCCCCCcccHHHHhccCCC-CCHHHHHHHHHHhCcH
Q 001580 81 EGKTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQ 147 (1050)
Q Consensus 81 sGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~TV~eni~~g~~-~~~~~~~~~~~~~~l~ 147 (1050)
||||||+++|+|+++|++|.+.. ++..++||||+|++|++|++|||.++.+ .++++...+++.+++.
T Consensus 372 sGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~ 451 (585)
T TIGR01192 372 AGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAH 451 (585)
T ss_pred CCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcH
Confidence 99999999999999999886542 2346999999999999999999999853 4566777888889999
Q ss_pred HHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCc
Q 001580 148 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL 227 (1050)
Q Consensus 148 ~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~ 227 (1050)
+.+..+|+|++|.+|++|.+||||||||++|||||+.+|+++||||||++||+++++.+.+.+.+. ..++|+|+|||++
T Consensus 452 ~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~-~~~~tvI~isH~~ 530 (585)
T TIGR01192 452 DFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDAL-RKNRTTFIIAHRL 530 (585)
T ss_pred HHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHH-hCCCEEEEEEcCh
Confidence 999999999999999999999999999999999999999999999999999999999999977654 4589999999999
Q ss_pred chhhhcCEEEEEcCCeEeeccChhhhhcChHHHHHHHHH
Q 001580 228 HFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 266 (1050)
Q Consensus 228 ~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~~~ 266 (1050)
+.+..+|+|++|++|++++.|+++++.++.+.|..++..
T Consensus 531 ~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~ 569 (585)
T TIGR01192 531 STVRNADLVLFLDQGRLIEKGSFQELIQKDGRFYKLLRR 569 (585)
T ss_pred HHHHcCCEEEEEECCEEEEECCHHHHHHCCChHHHHHHh
Confidence 999999999999999999999999999888888887754
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=370.04 Aligned_cols=216 Identities=27% Similarity=0.434 Sum_probs=187.4
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCe---ecCCCChHHHhhh
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF---DIAKFGLMDLRKI 742 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~---~i~~~~~~~~r~~ 742 (1050)
|+++++++.|+.. ++++|||++|+.||.+|+.|||||||||||++|+|+..|++|+|.++|. |.++.. ...++
T Consensus 3 i~i~~~~~~~~~~--~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~--~~~R~ 78 (345)
T COG1118 3 IRINNVKKRFGAF--GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--VRDRK 78 (345)
T ss_pred eeehhhhhhcccc--cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc--hhhcc
Confidence 7889999999754 7999999999999999999999999999999999999999999999999 666533 34567
Q ss_pred eEEEcCCcccccc-cHHHhcccCCC---------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001580 743 LGIIPQSPVLFSG-TVRFNLDPFSE---------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 812 (1050)
Q Consensus 743 i~~v~Q~~~lf~~-tv~~nl~~~~~---------~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~ 812 (1050)
||+|+|+..||.. ||++||.|+.+ ..+.++.+.|+.+.+..+-++.| .+||||||||+|
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQRVA 147 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQRVA 147 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHHHH
Confidence 9999999999965 99999987641 12344566666666666655555 689999999999
Q ss_pred HHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001580 813 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889 (1050)
Q Consensus 813 lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 889 (1050)
|||||.-+|++||||||+++||+.-+..+.+-|++.. .+.|+++||||.+++.. ||||++|++|+|...|+++|+..
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 9999999999999999999999999999999998865 37999999999999876 99999999999999999999988
Q ss_pred cCCChHH
Q 001580 890 NEGSSFS 896 (1050)
Q Consensus 890 ~~~~~~~ 896 (1050)
.+.+.|-
T Consensus 228 ~P~s~fV 234 (345)
T COG1118 228 HPASRFV 234 (345)
T ss_pred CCCccce
Confidence 7765543
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=366.64 Aligned_cols=207 Identities=61% Similarity=0.992 Sum_probs=182.3
Q ss_pred CCCCccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHH
Q 001580 660 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL 739 (1050)
Q Consensus 660 ~~~~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~ 739 (1050)
||..+.++++|++++|+....++++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 45567799999999997533369999999999999999999999999999999999999999999999999988887788
Q ss_pred hhheEEEcCCcccccccHHHhcccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHcc
Q 001580 740 RKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 819 (1050)
Q Consensus 740 r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~ 819 (1050)
|+.++|+||++.+|..|+++|+.++.....+++.++++ ++.....|||||+||++||||++.
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~ 142 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLK 142 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhh
Confidence 88999999999999899999997654333333332222 234567899999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecCh
Q 001580 820 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTP 884 (1050)
Q Consensus 820 ~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~ 884 (1050)
+|++|||||||++||+.++..+++.|++..+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 143 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 143 RPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999997678999999999999877999999999999988764
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=394.25 Aligned_cols=214 Identities=21% Similarity=0.374 Sum_probs=184.3
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
++++|++++|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.+.++. ++.|||
T Consensus 4 l~i~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~ 80 (356)
T PRK11650 4 LKLQAVRKSYDGK-TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIAM 80 (356)
T ss_pred EEEEeEEEEeCCC-CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEE
Confidence 8999999999422 3699999999999999999999999999999999999999999999999999887764 478999
Q ss_pred EcCCcccccc-cHHHhcccCCC---CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHH
Q 001580 746 IPQSPVLFSG-TVRFNLDPFSE---HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 817 (1050)
Q Consensus 746 v~Q~~~lf~~-tv~~nl~~~~~---~~~----~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAral 817 (1050)
|||++.+|.. ||++|+.+... ... +++.++++..++.++. ...+.+|||||||||+|||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LSgGq~QRvalARAL 149 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLL-----------DRKPRELSGGQRQRVAMGRAI 149 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHh-----------hCChhhCCHHHHHHHHHHHHH
Confidence 9999999964 99999975422 121 2344555555554444 444568999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 001580 818 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 893 (1050)
Q Consensus 818 l~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~ 893 (1050)
+.+|++|||||||++||+.++..+.+.|+++.+ +.|+|+|||+++++.. ||+|++|++|++++.|+++++..++..
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~~ 228 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPAS 228 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCcc
Confidence 999999999999999999999999999988653 7899999999999876 999999999999999999999876543
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-44 Score=351.59 Aligned_cols=223 Identities=28% Similarity=0.451 Sum_probs=188.6
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHH-hhhe
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKIL 743 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~-r~~i 743 (1050)
.+.++|+.++|..+ +++++|||+|.+||+||++|||||||||.+.++.|+.+|++|+|.+||.||+.++.... |..|
T Consensus 4 ~L~a~~l~K~y~kr--~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi 81 (243)
T COG1137 4 TLVAENLAKSYKKR--KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI 81 (243)
T ss_pred EEEehhhhHhhCCe--eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence 48899999999654 79999999999999999999999999999999999999999999999999999998764 5569
Q ss_pred EEEcCCcccccc-cHHHhcccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 001580 744 GIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 822 (1050)
Q Consensus 744 ~~v~Q~~~lf~~-tv~~nl~~~~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~ 822 (1050)
||+||++.+|.. ||++||...-+....+.........+...++.| .+.......+.+||||||+|+.|||||..+|+
T Consensus 82 gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~ 159 (243)
T COG1137 82 GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALAANPK 159 (243)
T ss_pred ccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHhcCCC
Confidence 999999999987 999999643222111112222233344445443 45555666778999999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchh-hhhcCEEEEEeCCEEEEecChhHHhhcC
Q 001580 823 ILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT-IIDCDRILLLDSGRVLEYDTPEELLSNE 891 (1050)
Q Consensus 823 illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~-~~~~d~i~vl~~G~i~~~g~~~el~~~~ 891 (1050)
++|||||++|+||.+...|++.++.+. +|-.|+++-|+..+ +.-|||.+++.+|+|.+.|+|+|+.+++
T Consensus 160 fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 160 FILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred EEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 999999999999999999999998875 47889999999766 5559999999999999999999998765
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=389.23 Aligned_cols=216 Identities=28% Similarity=0.447 Sum_probs=183.2
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheE
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 744 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 744 (1050)
.++++||+++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...|++||
T Consensus 7 ~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ig 83 (306)
T PRK13537 7 PIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRVG 83 (306)
T ss_pred eEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcEE
Confidence 4999999999974 36999999999999999999999999999999999999999999999999997654 45788999
Q ss_pred EEcCCccccc-ccHHHhcccCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccC
Q 001580 745 IIPQSPVLFS-GTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 820 (1050)
Q Consensus 745 ~v~Q~~~lf~-~tv~~nl~~~~~---~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~ 820 (1050)
|+||++.+|. .|+++|+.++.. ....+..+ .+.++++. .|+.........+||||||||++|||||+++
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~--~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~ 156 (306)
T PRK13537 84 VVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARA-----LVPPLLEF--AKLENKADAKVGELSGGMKRRLTLARALVND 156 (306)
T ss_pred EEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHH--cCCchHhcCchhhCCHHHHHHHHHHHHHhCC
Confidence 9999999886 599999975322 12221111 12233333 2444444555568999999999999999999
Q ss_pred CCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001580 821 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890 (1050)
Q Consensus 821 p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 890 (1050)
|++|||||||+|||+.+++.+++.|+++. .|+|||++||++++++. ||||++|++|++++.|+++++...
T Consensus 157 P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 157 PDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999999999875 47899999999999987 999999999999999999999764
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=387.16 Aligned_cols=220 Identities=20% Similarity=0.373 Sum_probs=186.2
Q ss_pred ccEEEEEEEEEeCCC---CCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCC------
Q 001580 664 GSIKFEDVVLRYRPE---LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF------ 734 (1050)
Q Consensus 664 ~~i~~~~v~~~y~~~---~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~------ 734 (1050)
..|+++|++|+|+.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 359999999999642 13699999999999999999999999999999999999999999999999998653
Q ss_pred ----------ChHHHhhheEEEcCCc--ccccccHHHhcccCCC---CCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhc
Q 001580 735 ----------GLMDLRKILGIIPQSP--VLFSGTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLD-AQVSE 798 (1050)
Q Consensus 735 ----------~~~~~r~~i~~v~Q~~--~lf~~tv~~nl~~~~~---~~~~~~~~~l~~~~~~~~i~~~p~gl~-t~v~~ 798 (1050)
....+|++|+||||+| .+|..|+++|+.+... .+.++.. + .+.++++.+ |++ ...+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~---~--~~~~~l~~~--gL~~~~~~~ 172 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAK---K--LAKFYLNKM--GLDDSYLER 172 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHH---H--HHHHHHHHc--CCChhHhcC
Confidence 3456788999999998 6888899999975421 1222221 1 123455553 564 45777
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCC
Q 001580 799 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSG 876 (1050)
Q Consensus 799 ~~~~LSgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G 876 (1050)
.+.+||||||||++|||||+.+|+||||||||++||+.++..+.+.|+++. +++|||+|||+++++.. ||||++|++|
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 888999999999999999999999999999999999999999999998864 57899999999998865 9999999999
Q ss_pred EEEEecChhHHhhc
Q 001580 877 RVLEYDTPEELLSN 890 (1050)
Q Consensus 877 ~i~~~g~~~el~~~ 890 (1050)
++++.|+++++...
T Consensus 253 ~i~~~g~~~~~~~~ 266 (320)
T PRK13631 253 KILKTGTPYEIFTD 266 (320)
T ss_pred EEEEeCCHHHHhcC
Confidence 99999999998754
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=374.22 Aligned_cols=209 Identities=32% Similarity=0.510 Sum_probs=177.5
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccc-----cCCccEEEECCeecCCCC--hHH
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV-----ELERGRILIDGFDIAKFG--LMD 738 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~-----~p~~G~i~~~g~~i~~~~--~~~ 738 (1050)
|+++||+++|+.. ++|+|+||+|++||++||+||||||||||+++|+|++ +|++|+|.++|.++...+ ...
T Consensus 1 i~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCCc--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 4789999999653 6999999999999999999999999999999999999 999999999999987766 456
Q ss_pred HhhheEEEcCCcccccccHHHhcccCCC---C-C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcC--CCCCChhHH
Q 001580 739 LRKILGIIPQSPVLFSGTVRFNLDPFSE---H-S----DADLWEALERAHLKDAIRRNSLGLDAQVSEA--GENFSVGQR 808 (1050)
Q Consensus 739 ~r~~i~~v~Q~~~lf~~tv~~nl~~~~~---~-~----~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~--~~~LSgGq~ 808 (1050)
+|++++|+||++.+|..|+++|+.+... . . ++++.++++..+ +....... +.+||||||
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~~~LSgG~~ 147 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAA-----------LWDEVKDRLHALGLSGGQQ 147 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcC-----------CChHHhccCCcccCCHHHH
Confidence 7888999999999887799999975321 1 1 122333344433 33333333 478999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 001580 809 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 887 (1050)
Q Consensus 809 qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 887 (1050)
||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+.+|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 148 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 148 QRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 9999999999999999999999999999999999999987655899999999999876 999999999999999988764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=392.34 Aligned_cols=216 Identities=25% Similarity=0.411 Sum_probs=186.0
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheE
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 744 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 744 (1050)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++ .+++||
T Consensus 6 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 81 (351)
T PRK11432 6 FVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDIC 81 (351)
T ss_pred EEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEE
Confidence 4999999999964 369999999999999999999999999999999999999999999999999987664 457899
Q ss_pred EEcCCcccccc-cHHHhcccCCC---CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001580 745 IIPQSPVLFSG-TVRFNLDPFSE---HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 816 (1050)
Q Consensus 745 ~v~Q~~~lf~~-tv~~nl~~~~~---~~----~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAra 816 (1050)
||||++.+|.. ||++|+.+... .. .+++.++++..++.++ ....+..|||||||||+||||
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~-----------~~r~~~~LSgGq~QRVaLARa 150 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGF-----------EDRYVDQISGGQQQRVALARA 150 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHHHHHH
Confidence 99999999975 99999976421 12 2234445555454443 344457899999999999999
Q ss_pred HccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 001580 817 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 893 (1050)
Q Consensus 817 ll~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~ 893 (1050)
|+.+|++|||||||++||+.++..+.+.|+++.+ +.|+|+|||+++++.. ||+|++|++|++++.|+++++..++..
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~~ 230 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPAS 230 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCc
Confidence 9999999999999999999999999999998754 7899999999999866 999999999999999999999876654
Q ss_pred hH
Q 001580 894 SF 895 (1050)
Q Consensus 894 ~~ 895 (1050)
.|
T Consensus 231 ~~ 232 (351)
T PRK11432 231 RF 232 (351)
T ss_pred hH
Confidence 33
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=392.16 Aligned_cols=220 Identities=24% Similarity=0.396 Sum_probs=186.2
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheE
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 744 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 744 (1050)
.++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...++ .++.+|
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~--~~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPP--QKRDYG 79 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEE
Confidence 3899999999974 369999999999999999999999999999999999999999999999999987765 367899
Q ss_pred EEcCCccccc-ccHHHhcccCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccC
Q 001580 745 IIPQSPVLFS-GTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 820 (1050)
Q Consensus 745 ~v~Q~~~lf~-~tv~~nl~~~~~---~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~ 820 (1050)
||||++.+|. .||++|+.+... .+..+.. ..+.++++.+ |++......+.+||||||||++|||||+.+
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~-----~~~~~~l~~l--~L~~~~~~~~~~LSgGq~QRvaLARaL~~~ 152 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVA-----ERVAELLDLV--GLPGSERKYPGQLSGGQQQRVALARALATS 152 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCCchhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999996 599999975421 1111111 1223334432 455555666678999999999999999999
Q ss_pred CCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCChH
Q 001580 821 SKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 895 (1050)
Q Consensus 821 p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~ 895 (1050)
|++|||||||++||+.++..+.+.|+++.+ +.|+|+|||+++++.. ||+|++|++|++++.|+++++..++...|
T Consensus 153 P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~~~ 230 (353)
T TIGR03265 153 PGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPF 230 (353)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHH
Confidence 999999999999999999999999988653 7899999999999866 99999999999999999999987654433
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-42 Score=371.67 Aligned_cols=213 Identities=29% Similarity=0.468 Sum_probs=184.4
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
++++|++++|++. ++|+|+||+|.+||++||+||||||||||+++|+|+++|++|+|.++|.++...++..+|+.++|
T Consensus 4 l~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 81 (241)
T PRK14250 4 IEFKEVSYSSFGK--EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM 81 (241)
T ss_pred EEEEeEEEEeCCe--eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence 8999999999643 69999999999999999999999999999999999999999999999999987777778889999
Q ss_pred EcCCcccccccHHHhcccCCCCC---HHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHHHHHHHccCC
Q 001580 746 IPQSPVLFSGTVRFNLDPFSEHS---DADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLSLSRALLRRS 821 (1050)
Q Consensus 746 v~Q~~~lf~~tv~~nl~~~~~~~---~~~~~~~l~~~~~~~~i~~~p~gl~-t~v~~~~~~LSgGq~qrl~lArall~~p 821 (1050)
+||++.+|..|+++|+.+..... ..++.+ +++.+ |++ ........+||||||||++||||++++|
T Consensus 82 ~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~---------~l~~~--~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p 150 (241)
T PRK14250 82 VFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEY---------YLSIV--GLNKEYATRDVKNLSGGEAQRVSIARTLANNP 150 (241)
T ss_pred EecCchhchhhHHHHHhcchhhcCcHHHHHHH---------HHHHc--CCCHHHhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 99999999889999987532111 122333 33332 443 2345567789999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 001580 822 KILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 891 (1050)
Q Consensus 822 ~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~ 891 (1050)
++|||||||++||+.+++.+.+.|++.. .++|+|++||+++++.. ||+|++|++|++++.|+++++...+
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 223 (241)
T PRK14250 151 EVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNP 223 (241)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCC
Confidence 9999999999999999999999999864 37999999999999876 9999999999999999999987644
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=391.47 Aligned_cols=220 Identities=27% Similarity=0.460 Sum_probs=185.1
Q ss_pred EEEEEEEEEeCC--CCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHH---Hh
Q 001580 666 IKFEDVVLRYRP--ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LR 740 (1050)
Q Consensus 666 i~~~~v~~~y~~--~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~---~r 740 (1050)
|+++|++++|+. ...++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999962 1246999999999999999999999999999999999999999999999999998877654 47
Q ss_pred hheEEEcCCccccc-ccHHHhcccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001580 741 KILGIIPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 816 (1050)
Q Consensus 741 ~~i~~v~Q~~~lf~-~tv~~nl~~~~---~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAra 816 (1050)
++|||+||++.+|. .|+++|+.+.. .....+..+ .+.++++.+ |++........+||||||||++||||
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAra 154 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKA-----RVTELLELV--GLSDKADRYPAQLSGGQKQRVAIARA 154 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 78999999999886 59999997531 112221111 123334432 55555556667899999999999999
Q ss_pred HccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 001580 817 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 892 (1050)
Q Consensus 817 ll~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~ 892 (1050)
|+.+|+||||||||++||+.++..+++.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...+.
T Consensus 155 L~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 233 (343)
T PRK11153 155 LASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPK 233 (343)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 9999999999999999999999999999998753 7899999999999877 99999999999999999999986543
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=416.16 Aligned_cols=222 Identities=31% Similarity=0.517 Sum_probs=192.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcccCCC-C---CCCCCCCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcC
Q 001580 3 VVAWQVVNANVSLKRMEEFLLAEEKILLPN-P---PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGG 78 (1050)
Q Consensus 3 ~~i~~~~~a~~s~~Ri~~fl~~~e~~~~~~-~---~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~ 78 (1050)
..+..+.++++|++|+.++++.++....+. + +..+....|+++|++|+|+. ++++|+|+||++++|++++||||
T Consensus 292 ~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~--~~~vL~~isl~i~~G~~vaIvG~ 369 (529)
T TIGR02868 292 AAAQALTRVRAAAERIEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFGYPG--SPPVLDGVSLDLPPGERVAILGP 369 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCcccCCCCceEEEEEEEEecCC--CCceeecceEEEcCCCEEEEECC
Confidence 356678899999999999998765321111 1 11112235999999999974 24699999999999999999999
Q ss_pred CCCcHHHHHHHHHcCCCCCCCCeeE-----------EeCcEEEEecCCCCCcccHHHHhccCCC-CCHHHHHHHHHHhCc
Q 001580 79 TGEGKTSLISAMLGELPPVSDASAV-----------IRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSL 146 (1050)
Q Consensus 79 nGsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i~~v~Q~~~l~~~TV~eni~~g~~-~~~~~~~~~~~~~~l 146 (1050)
||||||||+++|+|+++|++|.+.. +++.|+||||+|++|++||+|||.+|.+ .+++++.++++.+++
T Consensus 370 SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l 449 (529)
T TIGR02868 370 SGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGL 449 (529)
T ss_pred CCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCC
Confidence 9999999999999999999887643 1247999999999999999999999854 567889999999999
Q ss_pred HHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccC
Q 001580 147 QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQ 226 (1050)
Q Consensus 147 ~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~ 226 (1050)
.+++..+|+|++|.+|++|.+||||||||++|||||+++|+|||||||||+||+++++.+.+.+.+. .+++|+|+|||+
T Consensus 450 ~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~-~~~~TvIiItHr 528 (529)
T TIGR02868 450 ADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAA-LSGKTVVVITHH 528 (529)
T ss_pred HHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999988653 467999999998
Q ss_pred c
Q 001580 227 L 227 (1050)
Q Consensus 227 ~ 227 (1050)
+
T Consensus 529 l 529 (529)
T TIGR02868 529 L 529 (529)
T ss_pred C
Confidence 5
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=382.51 Aligned_cols=213 Identities=33% Similarity=0.579 Sum_probs=185.9
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheE
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 744 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 744 (1050)
.++++|++++|+.+ ..+|+||||+|++||++|++||||||||||+++|+|++.|++|+|.++|.+...- ....|++||
T Consensus 4 ~i~~~~l~k~~~~~-~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGGD-KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCCC-CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheE
Confidence 37889999999731 3799999999999999999999999999999999999999999999999998765 678899999
Q ss_pred EEcCCcccccc-cHHHhcccCCCC-------CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001580 745 IIPQSPVLFSG-TVRFNLDPFSEH-------SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 816 (1050)
Q Consensus 745 ~v~Q~~~lf~~-tv~~nl~~~~~~-------~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAra 816 (1050)
|+||+|.++.. |++|||.++... .++++.+.++..++.+ .......+||+|||||++||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLED-----------KANKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCch-----------hhCcchhhcCHHHHHHHHHHHH
Confidence 99999998876 999999764321 1345556666655443 2234456899999999999999
Q ss_pred HccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC-C-cEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001580 817 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-S-CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890 (1050)
Q Consensus 817 ll~~p~illLDEpts~LD~~~~~~i~~~l~~~~~-~-~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 890 (1050)
|+++|++|||||||+||||.++..+++.|+++.+ + +||+++||.+++++. ||+|++|++|+++..|+++++...
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999999765 4 699999999999988 999999999999999999998754
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-42 Score=379.94 Aligned_cols=215 Identities=29% Similarity=0.441 Sum_probs=184.5
Q ss_pred cEEEEEEEEEeCCC-CCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhhe
Q 001580 665 SIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 743 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~-~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i 743 (1050)
.++++||+++|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 38999999999642 23599999999999999999999999999999999999999999999999999887777888999
Q ss_pred EEEcCCcc--cccccHHHhcccCCC---CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001580 744 GIIPQSPV--LFSGTVRFNLDPFSE---HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 814 (1050)
Q Consensus 744 ~~v~Q~~~--lf~~tv~~nl~~~~~---~~~----~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lA 814 (1050)
+|+||+|. ++..||++|+.+... .+. +++.++++..++.+ .......+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-----------~~~~~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQD-----------FKEREPARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHh-----------HhhCCcccCCHHHHHHHHHH
Confidence 99999983 556799999975321 122 23444445444443 44445578999999999999
Q ss_pred HHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001580 815 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 890 (1050)
Q Consensus 815 rall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 890 (1050)
|||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|||+|||+++.+..||||++|++|++++.|+++++.+.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999998753 7899999999999877999999999999999999998754
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-42 Score=378.91 Aligned_cols=212 Identities=27% Similarity=0.400 Sum_probs=181.8
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheE
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 744 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 744 (1050)
.++++|++++|+.. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 38999999999633 36999999999999999999999999999999999999999999999999998877778888999
Q ss_pred EEcCCc--ccccccHHHhcccCCC---CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001580 745 IIPQSP--VLFSGTVRFNLDPFSE---HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 815 (1050)
Q Consensus 745 ~v~Q~~--~lf~~tv~~nl~~~~~---~~~----~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAr 815 (1050)
|+||+| .++..|+.+|+.+... ... +++.++++.+++.++ .......||||||||++|||
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LSgG~~qrv~lar 151 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDF-----------RDKPPYHLSYGQKKRVAIAG 151 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHH-----------hcCChhhCCHHHHHHHHHHH
Confidence 999998 5777899999975321 111 233444444444433 34444689999999999999
Q ss_pred HHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001580 816 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 888 (1050)
Q Consensus 816 all~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 888 (1050)
||+.+|++|||||||++||+.+...+.+.|+++. .++|||++||+++.+.. ||||++|++|++++.|+++++.
T Consensus 152 aL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 9999999999999999999999999999999874 47899999999999865 9999999999999999987653
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-42 Score=414.51 Aligned_cols=235 Identities=28% Similarity=0.454 Sum_probs=203.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCc
Q 001580 3 VVAWQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEG 82 (1050)
Q Consensus 3 ~~i~~~~~a~~s~~Ri~~fl~~~e~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsG 82 (1050)
.++..+.+++++++|+.++++.++......+...+....|+++|++|+|+.. ++++|+|+||++++|++++|+|+||||
T Consensus 282 ~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsG 360 (529)
T TIGR02857 282 ADYHARADGVAAAEALFAVLDAPRPLAGKAPVTAAPAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAG 360 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccCCCcCCCCCCCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCC
Confidence 4677888999999999999985532111111111112359999999999743 357999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCeeE------------EeCcEEEEecCCCCCcccHHHHhccCCC-CCHHHHHHHHHHhCcHHH
Q 001580 83 KTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHD 149 (1050)
Q Consensus 83 KSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~TV~eni~~g~~-~~~~~~~~~~~~~~l~~~ 149 (1050)
||||+++|+|+++|++|.+.. +++.|+||+|+|++|++||+||+.++.+ .++++..++++.+++.+.
T Consensus 361 KSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~ 440 (529)
T TIGR02857 361 KSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEF 440 (529)
T ss_pred HHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHH
Confidence 999999999999999886542 2346999999999999999999999854 466788899999999999
Q ss_pred HhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcch
Q 001580 150 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHF 229 (1050)
Q Consensus 150 ~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~ 229 (1050)
++.+|+|++|.+|++|.+||||||||++|||||+++|+++|||||||+||+++++.+++.+.+. .+++|+|+|||+++.
T Consensus 441 i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~-~~~~t~i~itH~~~~ 519 (529)
T TIGR02857 441 VAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRAL-AQGRTVLLVTHRLAL 519 (529)
T ss_pred HHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHh-cCCCEEEEEecCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999987654 368999999999999
Q ss_pred hhhcCEEEEE
Q 001580 230 LSQVDRIILV 239 (1050)
Q Consensus 230 l~~~d~i~~l 239 (1050)
+..||+|++|
T Consensus 520 ~~~~d~i~~l 529 (529)
T TIGR02857 520 AERADRIVVL 529 (529)
T ss_pred HHhCCEEEeC
Confidence 9999999875
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=365.59 Aligned_cols=206 Identities=27% Similarity=0.442 Sum_probs=177.7
Q ss_pred cEEEEeEEEEeCCC--CCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE---------------
Q 001580 41 AISIRNGYFSWDSK--AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 103 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~--~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------- 103 (1050)
+|+++++++.|... +..++|+||||+|++||+.||+|.||||||||++++.++..|++|.+..
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 48999999999853 1246999999999999999999999999999999999999999987653
Q ss_pred EeCcEEEEecCCCCC-cccHHHHhccCCCC----CH---HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHH
Q 001580 104 IRGTVAYVPQVSWIF-NATVRDNILFGSAF----EP---ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 175 (1050)
Q Consensus 104 ~~~~i~~v~Q~~~l~-~~TV~eni~~g~~~----~~---~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqR 175 (1050)
.|+.||+++|++.|+ +.||++||.|.... +. .++.+.++..+|.+..+..| .+||||||||
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQR 149 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQR 149 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhH
Confidence 244699999999987 68999999997432 12 23444566667776665555 5999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhh
Q 001580 176 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 253 (1050)
Q Consensus 176 v~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 253 (1050)
|+|||||+.+|+|||+|||||+|||++.+.|.+.|.+..+ .|.|+++|||.++.++. |||+.+|++|+++++|+..++
T Consensus 150 VaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 150 VAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 9999999999999999999999999999999998877654 59999999999999986 899999999999999999998
Q ss_pred hcCh
Q 001580 254 SNNG 257 (1050)
Q Consensus 254 ~~~~ 257 (1050)
+.++
T Consensus 230 F~~P 233 (339)
T COG1135 230 FANP 233 (339)
T ss_pred hcCc
Confidence 8764
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=371.33 Aligned_cols=217 Identities=24% Similarity=0.421 Sum_probs=185.4
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhcccc---CCccEEEECCeecCCCChHHHhhh
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE---LERGRILIDGFDIAKFGLMDLRKI 742 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~---p~~G~i~~~g~~i~~~~~~~~r~~ 742 (1050)
++++|+++.|++ +++|+|+||+|.+||++||+||||||||||+++|+|+++ |++|+|.++|.++...+...+|+.
T Consensus 3 ~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 80 (246)
T PRK14269 3 AKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80 (246)
T ss_pred eeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhh
Confidence 789999999964 369999999999999999999999999999999999984 689999999999988777778889
Q ss_pred eEEEcCCcccccccHHHhcccCCC---C------CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001580 743 LGIIPQSPVLFSGTVRFNLDPFSE---H------SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 813 (1050)
Q Consensus 743 i~~v~Q~~~lf~~tv~~nl~~~~~---~------~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~l 813 (1050)
++|+||++.+|..|+++|+.+... . .++++.++++..++.+++. ......+.+||||||||++|
T Consensus 81 i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~qrv~l 153 (246)
T PRK14269 81 VGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK-------DKLKQNALALSGGQQQRLCI 153 (246)
T ss_pred EEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhh-------HHhcCCcccCCHHHHHHHHH
Confidence 999999999998999999975321 0 1112334444444432221 23455667899999999999
Q ss_pred HHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 001580 814 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 891 (1050)
Q Consensus 814 Arall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~ 891 (1050)
||||+++|+||||||||++||+.++..+.+.|++..+++|+|+|||+++.+.. ||++++|++|++++.|+++++....
T Consensus 154 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 232 (246)
T PRK14269 154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENP 232 (246)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhCC
Confidence 99999999999999999999999999999999987778999999999999876 9999999999999999999987643
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=369.76 Aligned_cols=215 Identities=26% Similarity=0.415 Sum_probs=180.3
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
++++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 3 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 78 (239)
T cd03296 3 IEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGF 78 (239)
T ss_pred EEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEE
Confidence 789999999965 369999999999999999999999999999999999999999999999999876543 3568999
Q ss_pred EcCCccccc-ccHHHhcccCCCC-------CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHH
Q 001580 746 IPQSPVLFS-GTVRFNLDPFSEH-------SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 817 (1050)
Q Consensus 746 v~Q~~~lf~-~tv~~nl~~~~~~-------~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAral 817 (1050)
+||++.+|. .|+++|+.+.... ...+.. ..+.++++.+ |++........+||||||||++|||||
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al 151 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIR-----AKVHELLKLV--QLDWLADRYPAQLSGGQRQRVALARAL 151 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHH-----HHHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHHHH
Confidence 999999886 5999999753211 111111 1123334432 454555566678999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 001580 818 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 891 (1050)
Q Consensus 818 l~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~ 891 (1050)
+.+|++|||||||++||+.+++.+.+.|+++.+ ++|||++||+++.+.. ||+|++|++|++++.|+++++....
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 228 (239)
T cd03296 152 AVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHP 228 (239)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcCC
Confidence 999999999999999999999999999998653 7899999999999876 9999999999999999999987543
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-42 Score=389.81 Aligned_cols=217 Identities=24% Similarity=0.403 Sum_probs=185.6
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCc--cEEEECCeecCCCChHHHhh
Q 001580 664 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER--GRILIDGFDIAKFGLMDLRK 741 (1050)
Q Consensus 664 ~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~--G~i~~~g~~i~~~~~~~~r~ 741 (1050)
+.++++||+++|+.. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...++ .++
T Consensus 4 ~~l~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~r 79 (362)
T TIGR03258 4 GGIRIDHLRVAYGAN--TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HKR 79 (362)
T ss_pred eEEEEEEEEEEECCe--EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HHC
Confidence 459999999999743 69999999999999999999999999999999999999999 999999999987665 457
Q ss_pred heEEEcCCcccccc-cHHHhcccCC---CCCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001580 742 ILGIIPQSPVLFSG-TVRFNLDPFS---EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 813 (1050)
Q Consensus 742 ~i~~v~Q~~~lf~~-tv~~nl~~~~---~~~~~----~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~l 813 (1050)
.||||+|++.+|.. ||++|+.+.. ..... ++.++++.. |++........+|||||||||+|
T Consensus 80 ~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~-----------gL~~~~~~~~~~LSgGq~QRvaL 148 (362)
T TIGR03258 80 GLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLV-----------GLGDAAAHLPAQLSGGMQQRIAI 148 (362)
T ss_pred CEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------CCCchhhCChhhCCHHHHHHHHH
Confidence 89999999999966 9999997532 11222 233333333 44444555667899999999999
Q ss_pred HHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC---CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001580 814 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK---SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889 (1050)
Q Consensus 814 Arall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~---~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 889 (1050)
||||+.+|++|||||||++||+.++..+.+.|+++.+ +.|+|+|||+++++.. ||+|++|++|++++.|+++++..
T Consensus 149 ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 149 ARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228 (362)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999988653 6899999999999876 99999999999999999999987
Q ss_pred cCCChH
Q 001580 890 NEGSSF 895 (1050)
Q Consensus 890 ~~~~~~ 895 (1050)
++...|
T Consensus 229 ~p~~~~ 234 (362)
T TIGR03258 229 APADGF 234 (362)
T ss_pred CcCcHH
Confidence 654433
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-42 Score=368.13 Aligned_cols=202 Identities=29% Similarity=0.426 Sum_probs=170.3
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChH---HHhhh
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM---DLRKI 742 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~---~~r~~ 742 (1050)
++++|++++|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.. .+|+.
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 789999999964323699999999999999999999999999999999999999999999999998766543 36788
Q ss_pred eEEEcCCcccccc-cHHHhcccCC---CC----CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001580 743 LGIIPQSPVLFSG-TVRFNLDPFS---EH----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 814 (1050)
Q Consensus 743 i~~v~Q~~~lf~~-tv~~nl~~~~---~~----~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lA 814 (1050)
++|+||++.+|.. |+++|+.+.. .. .++++.++++..++. ........+||||||||++||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG~~qrv~la 150 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLE-----------GKAHALPMQLSGGEQQRVAIA 150 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------hhhhCChhhCCHHHHHHHHHH
Confidence 9999999998864 9999996421 11 122344444444443 334444568999999999999
Q ss_pred HHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEE
Q 001580 815 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRV 878 (1050)
Q Consensus 815 rall~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i 878 (1050)
|||+.+|++|||||||++||+.+++.+.+.|+++. .++|+|+|||+++++.. ||++++|++|++
T Consensus 151 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 151 RAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999864 47899999999999976 999999999975
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=378.67 Aligned_cols=218 Identities=29% Similarity=0.490 Sum_probs=182.4
Q ss_pred EEEEEEEEEeCCCC---CCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCC--hHHHh
Q 001580 666 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG--LMDLR 740 (1050)
Q Consensus 666 i~~~~v~~~y~~~~---~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~--~~~~r 740 (1050)
++++||+++|++.. .++|+||||+|.+||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999996421 36999999999999999999999999999999999999999999999999997643 35678
Q ss_pred hheEEEcCCc--ccccccHHHhcccCCC---CCHHHHHHHHHHhcHHHHHHHccCCcc--hhhhcCCCCCChhHHHHHHH
Q 001580 741 KILGIIPQSP--VLFSGTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLD--AQVSEAGENFSVGQRQLLSL 813 (1050)
Q Consensus 741 ~~i~~v~Q~~--~lf~~tv~~nl~~~~~---~~~~~~~~~l~~~~~~~~i~~~p~gl~--t~v~~~~~~LSgGq~qrl~l 813 (1050)
++|||+||+| .+|..|+++|+.+... .+..+..+. +.+.++. .|+. +.....+..||||||||++|
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~--~gL~~~~~~~~~~~~LSgGq~qrv~i 155 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENR-----VKRAMNI--VGLDYEDYKDKSPFELSGGQKRRVAI 155 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHH-----HHHHHHH--cCCCchhhccCCcccCCHHHHHHHHH
Confidence 8999999998 4678899999975321 222222111 1223333 2443 44566678899999999999
Q ss_pred HHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001580 814 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890 (1050)
Q Consensus 814 Arall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 890 (1050)
||||+.+|++|||||||++||+.+...+++.|+++.+ +.|||+|||+++++.. ||||++|++|++++.|+++++...
T Consensus 156 AraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13637 156 AGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE 235 (287)
T ss_pred HHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999998753 7899999999999865 999999999999999999998653
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=366.83 Aligned_cols=216 Identities=34% Similarity=0.548 Sum_probs=192.7
Q ss_pred CccEEEEEEEEEeCCC-CCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhh
Q 001580 663 SGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 741 (1050)
Q Consensus 663 ~~~i~~~~v~~~y~~~-~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~ 741 (1050)
.+.++++|++++|++. ..++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 3569999999999642 236999999999999999999999999999999999999999999999999988777777788
Q ss_pred heEEEcCCcccccccHHHhcccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccC
Q 001580 742 ILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 820 (1050)
Q Consensus 742 ~i~~v~Q~~~lf~~tv~~nl~~~~~-~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~ 820 (1050)
.++|+||++.+|..|+++|+.+... ....++.+..+..++.++++.+|.|+++.+.....+||||||||++|||||+++
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~ 168 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 8999999999998899999975432 233344455556677889999988999989999999999999999999999999
Q ss_pred CCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEE
Q 001580 821 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRV 878 (1050)
Q Consensus 821 p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i 878 (1050)
|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++++..||+|++|++|++
T Consensus 169 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 169 PQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999997777899999999999977999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=387.26 Aligned_cols=213 Identities=23% Similarity=0.397 Sum_probs=183.0
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++ .++.|+|
T Consensus 3 L~i~~l~~~~~~~--~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~~ 78 (353)
T PRK10851 3 IEIANIKKSFGRT--QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVGF 78 (353)
T ss_pred EEEEEEEEEeCCe--EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEEE
Confidence 7899999999753 69999999999999999999999999999999999999999999999999987654 4578999
Q ss_pred EcCCcccccc-cHHHhcccCCC-------CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001580 746 IPQSPVLFSG-TVRFNLDPFSE-------HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 813 (1050)
Q Consensus 746 v~Q~~~lf~~-tv~~nl~~~~~-------~~~----~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~l 813 (1050)
+||++.+|.. |+++|+.+... ... +++.++++..+ +.........+||||||||++|
T Consensus 79 v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------L~~~~~~~~~~LSgGq~QRval 147 (353)
T PRK10851 79 VFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQ-----------LAHLADRYPAQLSGGQKQRVAL 147 (353)
T ss_pred EecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcC-----------CchhhhCChhhCCHHHHHHHHH
Confidence 9999999975 99999975421 111 22333444443 4444455567899999999999
Q ss_pred HHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001580 814 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890 (1050)
Q Consensus 814 Arall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 890 (1050)
||||+.+|++|||||||++||+.++..+.+.|+++.+ +.|+|+|||+++++.. ||+|++|++|++++.|+++++..+
T Consensus 148 ArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~ 227 (353)
T PRK10851 148 ARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWRE 227 (353)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999999998654 6899999999999877 999999999999999999999876
Q ss_pred CCC
Q 001580 891 EGS 893 (1050)
Q Consensus 891 ~~~ 893 (1050)
+..
T Consensus 228 p~~ 230 (353)
T PRK10851 228 PAT 230 (353)
T ss_pred ccc
Confidence 543
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-42 Score=392.08 Aligned_cols=212 Identities=26% Similarity=0.433 Sum_probs=185.7
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
++++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...++++|||
T Consensus 4 L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 4 IDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred EEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 899999999974 379999999999999999999999999999999999999999999999999999888889999999
Q ss_pred EcCCccc-ccccHHHhcccCCC-----C------CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001580 746 IPQSPVL-FSGTVRFNLDPFSE-----H------SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 813 (1050)
Q Consensus 746 v~Q~~~l-f~~tv~~nl~~~~~-----~------~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~l 813 (1050)
+||++.+ |+.|+++|+.+... . ..+.+.++++..++.++. .....+||||||||++|
T Consensus 82 v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~-----------~~~~~~LSgGerQRv~I 150 (402)
T PRK09536 82 VPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFA-----------DRPVTSLSGGERQRVLL 150 (402)
T ss_pred EccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHH
Confidence 9999987 56799999865321 1 122345555555554433 34456899999999999
Q ss_pred HHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001580 814 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890 (1050)
Q Consensus 814 Arall~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 890 (1050)
||||+++|+||||||||++||+.++..+++.|+++. .++|||++||+++++.. |||+++|++|++++.|++++++..
T Consensus 151 ArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 151 ARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229 (402)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence 999999999999999999999999999999999875 47899999999999976 999999999999999999998753
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=347.78 Aligned_cols=221 Identities=27% Similarity=0.432 Sum_probs=190.7
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHH-hhhe
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKIL 743 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~-r~~i 743 (1050)
.++++|++..|+.. ++|++|||++++||+++|+||||||||||+++|+|+.+|.+|+|.++|.||+..+++.. |..|
T Consensus 3 mL~v~~l~~~YG~~--~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 3 MLEVENLSAGYGKI--QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred ceeEEeEeecccce--eEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 38999999999763 79999999999999999999999999999999999999999999999999999998874 6679
Q ss_pred EEEcCCcccccc-cHHHhcccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 001580 744 GIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 822 (1050)
Q Consensus 744 ~~v~Q~~~lf~~-tv~~nl~~~~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~ 822 (1050)
+||||...+|.. ||.|||..+...... +......+++..+.|| -+....+..+.+|||||||.++|||||+.+|+
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~---~~~~~~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~Pk 156 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRD---KEAQERDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSRPK 156 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhcccc---cccccccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcCCC
Confidence 999999999976 999999754221110 0000111344455566 46667778888999999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 001580 823 ILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 891 (1050)
Q Consensus 823 illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~ 891 (1050)
+|+|||||.||-|.-.+.|.+.|+++.+ +.||++|-++...+.. +||.+||++|+|+..|+.+||.+++
T Consensus 157 lLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 157 LLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred EEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 9999999999999999999999999874 5699999999999766 9999999999999999999998764
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=389.54 Aligned_cols=205 Identities=29% Similarity=0.446 Sum_probs=177.4
Q ss_pred CceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHH----hhheEEEcCCcccccc-
Q 001580 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL----RKILGIIPQSPVLFSG- 755 (1050)
Q Consensus 681 ~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~----r~~i~~v~Q~~~lf~~- 755 (1050)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++..+ |+.|+||||++.+|..
T Consensus 7 ~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~ 86 (363)
T TIGR01186 7 KGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHM 86 (363)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCC
Confidence 69999999999999999999999999999999999999999999999999999888777 7789999999999975
Q ss_pred cHHHhcccCCC---CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEec
Q 001580 756 TVRFNLDPFSE---HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 828 (1050)
Q Consensus 756 tv~~nl~~~~~---~~~----~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~illLDE 828 (1050)
||++|+.+... ... +++.++++.+ |++...+..+.+|||||||||+|||||+.+|+||||||
T Consensus 87 TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~v-----------gL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDE 155 (363)
T TIGR01186 87 TILQNTSLGPELLGWPEQERKEKALELLKLV-----------GLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDE 155 (363)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------CCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999975321 111 2233444443 44455566667899999999999999999999999999
Q ss_pred cCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCChHH
Q 001580 829 ATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 896 (1050)
Q Consensus 829 pts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~~ 896 (1050)
||++||+.+++.+++.+.++. .++|+|+|||+++++.. ||+|++|++|++++.|++++++.++...|.
T Consensus 156 P~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~ 226 (363)
T TIGR01186 156 AFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYV 226 (363)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHH
Confidence 999999999999999998864 37999999999999766 999999999999999999999876544443
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-42 Score=371.70 Aligned_cols=220 Identities=29% Similarity=0.446 Sum_probs=180.5
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCC---hHHHhhh
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LMDLRKI 742 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~---~~~~r~~ 742 (1050)
++++|++++|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4689999999642 36999999999999999999999999999999999999999999999999998766 3457788
Q ss_pred eEEEcCCccccc-ccHHHhcccCCCCCHH---HH---HHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001580 743 LGIIPQSPVLFS-GTVRFNLDPFSEHSDA---DL---WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 815 (1050)
Q Consensus 743 i~~v~Q~~~lf~-~tv~~nl~~~~~~~~~---~~---~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAr 815 (1050)
++|+||++.+|. .|+++|+.+....... .+ ........+.+.++. .|+.......+.+||||||||++|||
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~l~~~~~~~~~~LS~G~~qrv~la~ 157 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALER--VGLLDKAYQRADQLSGGQQQRVAIAR 157 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHH--cCChhhhCCCcccCCHHHHHHHHHHH
Confidence 999999998886 5999999642110000 00 000001112333443 24555566677899999999999999
Q ss_pred HHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001580 816 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 888 (1050)
Q Consensus 816 all~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 888 (1050)
||+.+|+||||||||++||+.++..+.+.|+++. .++|||++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 158 ALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 9999999999999999999999999999999865 37899999999999986 9999999999999999998874
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-42 Score=370.17 Aligned_cols=220 Identities=28% Similarity=0.470 Sum_probs=184.1
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHH-hhheE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKILG 744 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~-r~~i~ 744 (1050)
++++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 468999999964 369999999999999999999999999999999999999999999999999988776554 56799
Q ss_pred EEcCCcccccc-cHHHhcccCCCCC-HHHH-------HHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001580 745 IIPQSPVLFSG-TVRFNLDPFSEHS-DADL-------WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 815 (1050)
Q Consensus 745 ~v~Q~~~lf~~-tv~~nl~~~~~~~-~~~~-------~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAr 815 (1050)
|+||++.+|.. |+++|+.+..... ...+ ........+.++++.+ |++...+....+||||||||++|||
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~ 156 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEIAR 156 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHHH
Confidence 99999999876 9999986432110 0000 0000112234455553 6666667777899999999999999
Q ss_pred HHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001580 816 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889 (1050)
Q Consensus 816 all~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 889 (1050)
||+.+|++|||||||++||+.+++.+++.|+++. .++|+|++||+++++.. ||+|++|++|++++.|+++++..
T Consensus 157 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 157 ALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 9999999999999999999999999999999865 57899999999999977 99999999999999999998865
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-42 Score=366.25 Aligned_cols=214 Identities=26% Similarity=0.435 Sum_probs=178.0
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
|+++||++.|++...++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...++++++|
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEE
Confidence 478999999964223699999999999999999999999999999999999999999999999998754 3567788999
Q ss_pred EcCCccccc-ccHHHhcccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 001580 746 IPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 821 (1050)
Q Consensus 746 v~Q~~~lf~-~tv~~nl~~~~---~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p 821 (1050)
+||++.+|. .|+++|+.+.. .....+.. ..+.++++.+ |+.........+||||||||++||||++.+|
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 152 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIK-----EEVELLLRVL--GLTDKANKRARTLSGGMKRKLSLAIALIGGP 152 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CCHHHHhChhhhCCHHHHHHHHHHHHHhcCC
Confidence 999999884 69999986421 11111111 1122333332 3444444555789999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 001580 822 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 887 (1050)
Q Consensus 822 ~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 887 (1050)
++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 153 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 153 SVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 999999999999999999999999997777999999999999976 999999999999999998875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-42 Score=385.81 Aligned_cols=216 Identities=27% Similarity=0.460 Sum_probs=183.3
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheE
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 744 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 744 (1050)
.|+++|++++|++. .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...|+.||
T Consensus 41 ~i~i~nl~k~y~~~--~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig 117 (340)
T PRK13536 41 AIDLAGVSKSYGDK--AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIG 117 (340)
T ss_pred eEEEEEEEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEE
Confidence 49999999999743 6999999999999999999999999999999999999999999999999987644 46788999
Q ss_pred EEcCCccccc-ccHHHhcccCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccC
Q 001580 745 IIPQSPVLFS-GTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 820 (1050)
Q Consensus 745 ~v~Q~~~lf~-~tv~~nl~~~~~---~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~ 820 (1050)
|+||++.++. .|+.+|+.++.. ....+..+. +.++++. .|+.........+||||||||++|||||+++
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~ll~~--~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~ 190 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAV-----IPSLLEF--ARLESKADARVSDLSGGMKRRLTLARALIND 190 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHH--cCCchhhCCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999998875 599999975321 121111111 2233333 3454455556678999999999999999999
Q ss_pred CCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001580 821 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890 (1050)
Q Consensus 821 p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 890 (1050)
|++|||||||+|||+.++..+++.|+++. .|+|||++||+++++.. ||+|++|++|+++..|+++++...
T Consensus 191 P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 191 PQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999999999999875 47999999999999977 999999999999999999999764
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=376.67 Aligned_cols=215 Identities=28% Similarity=0.451 Sum_probs=184.5
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheE
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 744 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 744 (1050)
.++++||+++|+...+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.|+
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 38999999999643346999999999999999999999999999999999999999999999999998877777888999
Q ss_pred EEcCCc--ccccccHHHhcccCCC---CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001580 745 IIPQSP--VLFSGTVRFNLDPFSE---HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 815 (1050)
Q Consensus 745 ~v~Q~~--~lf~~tv~~nl~~~~~---~~~----~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAr 815 (1050)
|+||++ .++..|+.+|+.+... ... +++.++++..++.+ ........||||||||++|||
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-----------~~~~~~~~LS~G~~qrv~lar 153 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMED-----------FLNREPHRLSGGQKQRVAIAG 153 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChh-----------hhhCCcccCCHHHHHHHHHHH
Confidence 999998 4556799999975321 122 22344444444444 444455689999999999999
Q ss_pred HHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001580 816 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 890 (1050)
Q Consensus 816 all~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 890 (1050)
||+.+|+||||||||+|||+.+...+.+.|+++.+ ++|||++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 154 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999998753 7899999999999878999999999999999999988753
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-42 Score=364.83 Aligned_cols=206 Identities=26% Similarity=0.448 Sum_probs=171.2
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
++++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEEE
Confidence 468999999964 369999999999999999999999999999999999999999999999999876543 4678999
Q ss_pred EcCCccccc-ccHHHhcccCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 001580 746 IPQSPVLFS-GTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 821 (1050)
Q Consensus 746 v~Q~~~lf~-~tv~~nl~~~~~---~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p 821 (1050)
+||++.+|. .|+++|+.+... ....... ..+.++++. .|++........+||||||||++|||||+.+|
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~--~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p 149 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIR-----ARVRELLEL--VGLEGLLNRYPHELSGGQQQRVALARALAREP 149 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHH-----HHHHHHHHH--cCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 999998886 599999964311 1111111 112233333 24445555556789999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001580 822 KILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 882 (1050)
Q Consensus 822 ~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 882 (1050)
++|||||||++||+.++..+++.|+++. .++|||++||+++++.. ||+|++|++|++++.|
T Consensus 150 ~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 150 SLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999864 37899999999999876 9999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=378.49 Aligned_cols=217 Identities=23% Similarity=0.396 Sum_probs=181.2
Q ss_pred EEEEEEEEEeCCCC---CCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCC----CChHH
Q 001580 666 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK----FGLMD 738 (1050)
Q Consensus 666 i~~~~v~~~y~~~~---~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~----~~~~~ 738 (1050)
|+++||+|+|+... +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++.. .....
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999996432 259999999999999999999999999999999999999999999999999863 23456
Q ss_pred HhhheEEEcCCc--ccccccHHHhcccCCC---CCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHH
Q 001580 739 LRKILGIIPQSP--VLFSGTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLS 812 (1050)
Q Consensus 739 ~r~~i~~v~Q~~--~lf~~tv~~nl~~~~~---~~~~~~~~~l~~~~~~~~i~~~p~gl~-t~v~~~~~~LSgGq~qrl~ 812 (1050)
+|+.+||++|+| .+|..|+.+|+.+... ....+..+ .+.+.++.+ |+. ........+||||||||++
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~LSgGqkqrva 154 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEK-----IAAEKLEMV--GLADEFWEKSPFELSGGQMRRVA 154 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CCChhhccCCcccCCHHHHHHHH
Confidence 788999999998 6888899999975421 12222111 122333332 442 2345666789999999999
Q ss_pred HHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001580 813 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889 (1050)
Q Consensus 813 lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 889 (1050)
|||||+.+|+||||||||++||+.++..+.+.|+++. .++|||++||+++.+.. ||||++|++|++++.|+++++..
T Consensus 155 iA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 155 IAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred HHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 9999999999999999999999999999999998865 47899999999999865 99999999999999999999865
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=387.68 Aligned_cols=216 Identities=24% Similarity=0.405 Sum_probs=185.6
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheE
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 744 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 744 (1050)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++. ++.+|
T Consensus 14 ~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 89 (375)
T PRK09452 14 LVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHVN 89 (375)
T ss_pred eEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 4899999999964 3699999999999999999999999999999999999999999999999999877653 57899
Q ss_pred EEcCCcccccc-cHHHhcccCCC---CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001580 745 IIPQSPVLFSG-TVRFNLDPFSE---HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 816 (1050)
Q Consensus 745 ~v~Q~~~lf~~-tv~~nl~~~~~---~~~----~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAra 816 (1050)
|+||++.+|.. ||++|+.+... ... +++.++++..++.+++. ....+|||||||||+||||
T Consensus 90 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~p~~LSgGq~QRVaLARa 158 (375)
T PRK09452 90 TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQ-----------RKPHQLSGGQQQRVAIARA 158 (375)
T ss_pred EEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHHHHHH
Confidence 99999999966 99999975321 122 23444455555544444 4456899999999999999
Q ss_pred HccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 001580 817 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 893 (1050)
Q Consensus 817 ll~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~ 893 (1050)
|+.+|++|||||||++||+.++..+.+.|+++.+ +.|+|+||||++++.. ||+|++|++|+|++.|+++++..++..
T Consensus 159 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~~ 238 (375)
T PRK09452 159 VVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKN 238 (375)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 9999999999999999999999999999998653 7899999999999866 999999999999999999999876543
Q ss_pred hH
Q 001580 894 SF 895 (1050)
Q Consensus 894 ~~ 895 (1050)
.|
T Consensus 239 ~~ 240 (375)
T PRK09452 239 LF 240 (375)
T ss_pred HH
Confidence 33
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=357.77 Aligned_cols=204 Identities=30% Similarity=0.514 Sum_probs=175.0
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeEEe---------CcEEE
Q 001580 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR---------GTVAY 110 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~---------~~i~~ 110 (1050)
+.|+++|++|+|.++ ++|+||||++++|++++|+||||||||||+|+|+|+++|.+|.+.... .+|||
T Consensus 3 ~~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgY 79 (254)
T COG1121 3 PMIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGY 79 (254)
T ss_pred cEEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEE
Confidence 469999999999742 599999999999999999999999999999999999999998876432 36999
Q ss_pred EecCC---CCCcccHHHHhccCCCCC-----------HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHH
Q 001580 111 VPQVS---WIFNATVRDNILFGSAFE-----------PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 176 (1050)
Q Consensus 111 v~Q~~---~l~~~TV~eni~~g~~~~-----------~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv 176 (1050)
|||.. |-|..||+|-+.+|.... .+++.++++..++.+..+. ...+|||||+|||
T Consensus 80 VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-----------~i~~LSGGQ~QRV 148 (254)
T COG1121 80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-----------QIGELSGGQKQRV 148 (254)
T ss_pred cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-----------cccccCcHHHHHH
Confidence 99964 558899999999984322 2566777788777755443 3358999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhhhc
Q 001580 177 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 255 (1050)
Q Consensus 177 ~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 255 (1050)
.|||||+++|++|+|||||+++|+.++..+++.+.++..+|+||++||||++.+.. +|+|+.|.+ ++.+.|+++++.+
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~-~~~~~G~~~~~~~ 227 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNR-HLIASGPPEEVLT 227 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcC-eeEeccChhhccC
Confidence 99999999999999999999999999999999888877779999999999998765 899999965 6788999998876
Q ss_pred ChH
Q 001580 256 NGE 258 (1050)
Q Consensus 256 ~~~ 258 (1050)
.+.
T Consensus 228 ~~~ 230 (254)
T COG1121 228 EEN 230 (254)
T ss_pred HHH
Confidence 543
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=370.20 Aligned_cols=220 Identities=28% Similarity=0.413 Sum_probs=179.6
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCCh---HHHhhh
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL---MDLRKI 742 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~---~~~r~~ 742 (1050)
++++||+++|+.+ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.
T Consensus 2 l~~~~l~~~~~~~-~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPNG-KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCCC-cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 6899999999622 369999999999999999999999999999999999999999999999999877654 346788
Q ss_pred eEEEcCCccccc-ccHHHhcccCCCCCH---HHH---HHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001580 743 LGIIPQSPVLFS-GTVRFNLDPFSEHSD---ADL---WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 815 (1050)
Q Consensus 743 i~~v~Q~~~lf~-~tv~~nl~~~~~~~~---~~~---~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAr 815 (1050)
++|+||++.+|. .|+++|+.+...... ... ........+.++++.+ |+.......+.+||||||||++|||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~ 158 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV--GLADKAYQRADQLSGGQQQRVAIAR 158 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHH
Confidence 999999998886 599999964211000 000 0000011223334432 5555556667889999999999999
Q ss_pred HHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001580 816 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 888 (1050)
Q Consensus 816 all~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 888 (1050)
||+.+|++|||||||++||+.+++.+.+.|+++. .++|+|+|||+++++.. ||++++|++|++++.|+++++.
T Consensus 159 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (243)
T TIGR02315 159 ALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELD 234 (243)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHhC
Confidence 9999999999999999999999999999999864 37899999999999866 9999999999999999998863
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=365.31 Aligned_cols=216 Identities=29% Similarity=0.455 Sum_probs=180.1
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHH-hhheE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKILG 744 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~-r~~i~ 744 (1050)
|+++||+++|++. ++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGKS--QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCCe--eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 4789999999643 69999999999999999999999999999999999999999999999999987776554 56799
Q ss_pred EEcCCcccccc-cHHHhcccCCCCC-HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 001580 745 IIPQSPVLFSG-TVRFNLDPFSEHS-DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 822 (1050)
Q Consensus 745 ~v~Q~~~lf~~-tv~~nl~~~~~~~-~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~ 822 (1050)
|+||++.+|.. |+++|+.+..... ..+.. ..+.+.++.++ +++........+||||||||++|||||+.+|+
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~-----~~~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 152 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRK-----ARLERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSRPK 152 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcCchhHH-----HHHHHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999998876 9999997532211 11111 11122233321 23444556667899999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001580 823 ILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889 (1050)
Q Consensus 823 illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 889 (1050)
+|||||||++||+.++..+++.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 153 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 153 LLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 999999999999999999999999865 47899999999999877 99999999999999999888753
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=369.36 Aligned_cols=217 Identities=29% Similarity=0.490 Sum_probs=182.4
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCC-----ccEEEECCeecCCC--ChHH
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAKF--GLMD 738 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~-----~G~i~~~g~~i~~~--~~~~ 738 (1050)
++++||+++|++. ++++|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|.++... +...
T Consensus 2 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 2 IEIENLNLFYGEK--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEEEEEECCe--eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 7899999999743 6999999999999999999999999999999999999998 99999999998753 3456
Q ss_pred HhhheEEEcCCcccccccHHHhcccCC---C-CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001580 739 LRKILGIIPQSPVLFSGTVRFNLDPFS---E-HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 810 (1050)
Q Consensus 739 ~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~-~~~----~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qr 810 (1050)
+++.++|+||++.+|..|+++|+.+.. . ... +.+.++++..++.+.+ .........+||||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~qr 152 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEV-------KDRLHDSALGLSGGQQQR 152 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcch-------hhHhhCCcccCCHHHHHH
Confidence 788899999999988899999996421 1 111 1223333333332111 034556677899999999
Q ss_pred HHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001580 811 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889 (1050)
Q Consensus 811 l~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 889 (1050)
++|||||+.+|++|||||||++||+.++..+.+.|+++.+++|+|+|||+++.+.. ||++++|++|++++.|+++++..
T Consensus 153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (247)
T TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232 (247)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987667899999999999876 99999999999999999999875
Q ss_pred cC
Q 001580 890 NE 891 (1050)
Q Consensus 890 ~~ 891 (1050)
..
T Consensus 233 ~~ 234 (247)
T TIGR00972 233 NP 234 (247)
T ss_pred CC
Confidence 43
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=346.98 Aligned_cols=212 Identities=29% Similarity=0.475 Sum_probs=180.7
Q ss_pred CCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE---------------
Q 001580 39 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 103 (1050)
Q Consensus 39 ~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------- 103 (1050)
.+.|++++++|+|. ++.+++||||+|++||+++|+|+||||||||||+|.|+++|++|.+..
T Consensus 6 ~~~I~vr~v~~~fG---~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ 82 (263)
T COG1127 6 EPLIEVRGVTKSFG---DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE 82 (263)
T ss_pred cceEEEeeeeeecC---CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHH
Confidence 46799999999996 578999999999999999999999999999999999999999987653
Q ss_pred EeCcEEEEecCCCCC-cccHHHHhccCC----CCCHHHHH----HHHHHhCcHHH-HhcCCCCCcccccCCCCCCCHHHH
Q 001580 104 IRGTVAYVPQVSWIF-NATVRDNILFGS----AFEPARYE----KAIDVTSLQHD-LDLLPGGDVTEIGERGVNISGGQK 173 (1050)
Q Consensus 104 ~~~~i~~v~Q~~~l~-~~TV~eni~~g~----~~~~~~~~----~~~~~~~l~~~-~~~~~~g~~t~vg~~g~~LSGGqr 173 (1050)
+++++|+++|+..|| +.||+||+.|.. ...+..++ ..++.++|... .+.+| .+||||++
T Consensus 83 ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~ 151 (263)
T COG1127 83 IRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMR 151 (263)
T ss_pred HHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHH
Confidence 345699999999999 789999999852 22333222 23667888777 77777 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChh
Q 001580 174 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFE 251 (1050)
Q Consensus 174 qRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 251 (1050)
+|++||||++.+|+++++||||+||||.+...+-+.+.++.. -|.|+|+||||++.+.. |||++++.+|+|+.+|+++
T Consensus 152 KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~ 231 (263)
T COG1127 152 KRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPE 231 (263)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHH
Confidence 999999999999999999999999999999988776666544 48999999999999876 5999999999999999999
Q ss_pred hhhcC-hHHHHHHH
Q 001580 252 DLSNN-GELFQKLM 264 (1050)
Q Consensus 252 ~l~~~-~~~~~~l~ 264 (1050)
++.+. .+..++.+
T Consensus 232 el~~sd~P~v~qf~ 245 (263)
T COG1127 232 ELLASDDPWVRQFF 245 (263)
T ss_pred HHHhCCCHHHHHHh
Confidence 98765 44444444
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=368.47 Aligned_cols=217 Identities=27% Similarity=0.465 Sum_probs=183.9
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
++++||+++|++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4689999999752 369999999999999999999999999999999999999999999999999988777778889999
Q ss_pred EcCCccccc-ccHHHhcccCCC---CCHHHHHHHHHHhcHHHHHHHccCCcch--hhhcCCCCCChhHHHHHHHHHHHcc
Q 001580 746 IPQSPVLFS-GTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDA--QVSEAGENFSVGQRQLLSLSRALLR 819 (1050)
Q Consensus 746 v~Q~~~lf~-~tv~~nl~~~~~---~~~~~~~~~l~~~~~~~~i~~~p~gl~t--~v~~~~~~LSgGq~qrl~lArall~ 819 (1050)
+||++.+|. .|+++|+.+... ....+. ...+.++++.+ |+.. .....+.+||||||||++|||||++
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~~ 152 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKI-----RERADELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALAA 152 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHhc
Confidence 999999886 599999965311 111111 11233444443 4443 4566678899999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001580 820 RSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890 (1050)
Q Consensus 820 ~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 890 (1050)
+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 153 ~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 153 DPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 9999999999999999999999999998753 7899999999998866 999999999999999999988654
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=369.83 Aligned_cols=218 Identities=24% Similarity=0.393 Sum_probs=183.2
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhcccc-----CCccEEEECCeecCC--CChH
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGLM 737 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~-----p~~G~i~~~g~~i~~--~~~~ 737 (1050)
.|+++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++.. .+..
T Consensus 6 ~l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 6 KMEARGLSFFYGDF--QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred EEEEeeeEEEECCe--eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 49999999999643 69999999999999999999999999999999999975 689999999999864 3345
Q ss_pred HHhhheEEEcCCcccccccHHHhcccCC---CC-C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001580 738 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 809 (1050)
Q Consensus 738 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~-~----~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~q 809 (1050)
.+|+.++|+||++.+|..|+++|+.+.. .. . .+++.++++.+++.+.+ ....+....+|||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq~q 156 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV-------KDRLHESALGLSGGQQQ 156 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhh-------hHHhhCCcccCCHHHHH
Confidence 6788999999999999889999996421 11 1 12334444444443221 22345667789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001580 810 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 888 (1050)
Q Consensus 810 rl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 888 (1050)
|++|||||+.+|+||||||||++||+.+...+.+.|+++.+++|||++||+++++.. ||+|++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998667899999999999876 9999999999999999999987
Q ss_pred hcC
Q 001580 889 SNE 891 (1050)
Q Consensus 889 ~~~ 891 (1050)
...
T Consensus 237 ~~~ 239 (253)
T PRK14242 237 TRP 239 (253)
T ss_pred cCC
Confidence 643
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=379.82 Aligned_cols=215 Identities=24% Similarity=0.406 Sum_probs=185.1
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
++++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+++||
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEE
Confidence 789999999964 369999999999999999999999999999999999999999999999999876 44567889999
Q ss_pred EcCCcccccc-cHHHhcccCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 001580 746 IPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 821 (1050)
Q Consensus 746 v~Q~~~lf~~-tv~~nl~~~~~---~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p 821 (1050)
+||++.+|.. |+.+|+.+... ....+..+ .+.+.++.+ |++.........||||||||++|||||+++|
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~~p 152 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQ-----RVEEMIELV--GLRPEQHKKIGQLSKGYRQRVGLAQALIHDP 152 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchHhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 9999999876 99999974321 11111111 123334443 5666666777889999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001580 822 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890 (1050)
Q Consensus 822 ~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 890 (1050)
++|||||||+|||+.+++.+++.|+++.+++|||++||+++++.. ||||++|++|++++.|+++++.+.
T Consensus 153 ~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 153 KVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 999999999999999999999999998778999999999999987 999999999999999999998764
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=388.44 Aligned_cols=212 Identities=22% Similarity=0.341 Sum_probs=182.2
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
++++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++ .++.|+|
T Consensus 4 l~i~~l~~~~~~~--~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i~~ 79 (369)
T PRK11000 4 VTLRNVTKAYGDV--VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGVGM 79 (369)
T ss_pred EEEEEEEEEeCCe--EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCEEE
Confidence 8999999999643 69999999999999999999999999999999999999999999999999987665 3567999
Q ss_pred EcCCcccccc-cHHHhcccCCC---CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHH
Q 001580 746 IPQSPVLFSG-TVRFNLDPFSE---HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 817 (1050)
Q Consensus 746 v~Q~~~lf~~-tv~~nl~~~~~---~~~----~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAral 817 (1050)
+||++.+|.. |+++|+.+... ... +++.++++.. |++........+|||||||||+|||||
T Consensus 80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~l-----------gL~~~~~~~~~~LSgGq~QRvaLAraL 148 (369)
T PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVL-----------QLAHLLDRKPKALSGGQRQRVAIGRTL 148 (369)
T ss_pred EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHc-----------CChhhhcCChhhCCHHHHHHHHHHHHH
Confidence 9999999965 99999975321 111 2233344443 444444555578999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 001580 818 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 892 (1050)
Q Consensus 818 l~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~ 892 (1050)
+.+|++|||||||++||+.+++.+.+.|+++.+ +.|+|+|||+++++.. ||+|++|++|++++.|+++++...+.
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~ 226 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 226 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 999999999999999999999999999988643 7899999999999876 99999999999999999999987654
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=366.87 Aligned_cols=217 Identities=28% Similarity=0.455 Sum_probs=181.1
Q ss_pred EEEEEEEEEeCCC--CCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHH---Hh
Q 001580 666 IKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LR 740 (1050)
Q Consensus 666 i~~~~v~~~y~~~--~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~---~r 740 (1050)
|+++|++++|++. ..++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 7899999999643 126999999999999999999999999999999999999999999999999988765443 47
Q ss_pred hheEEEcCCccccc-ccHHHhcccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001580 741 KILGIIPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 816 (1050)
Q Consensus 741 ~~i~~v~Q~~~lf~-~tv~~nl~~~~---~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAra 816 (1050)
+.++|+||++.+|. .|+++|+.+.. ........ ..+.++++.+ |++........+||||||||++||||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~a 154 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIE-----ERVLELLELV--GLEDKADAYPAQLSGGQKQRVGIARA 154 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHC--CChhhhhcChhhCCHHHHHHHHHHHH
Confidence 78999999999987 59999986421 11111111 1123344442 45555555667899999999999999
Q ss_pred HccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001580 817 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889 (1050)
Q Consensus 817 ll~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 889 (1050)
|+.+|++|||||||++||+.++..+.+.|+++.+ ++|+|++||+++++.. ||++++|++|++++.|+++++.+
T Consensus 155 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 155 LANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999999998653 7899999999999876 99999999999999999988864
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=364.34 Aligned_cols=208 Identities=28% Similarity=0.453 Sum_probs=176.1
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
|+++|++++|++. ++|+|+||++.+||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....++++++|
T Consensus 1 i~~~~~~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGDF--EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECCE--EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCc-ChHHHhhcEEE
Confidence 4789999999643 69999999999999999999999999999999999999999999999998865 33566788999
Q ss_pred EcCCcccccc-cHHHhcccCC---CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHH
Q 001580 746 IPQSPVLFSG-TVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 817 (1050)
Q Consensus 746 v~Q~~~lf~~-tv~~nl~~~~---~~~----~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAral 817 (1050)
+||++.++.. |+++|+.+.. ... ++++.++++..++ +........+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGL-----------LEAADRLVKTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----------HHHhhCChhhCCHHHHHHHHHHHHH
Confidence 9999988875 9999986421 111 1223344444444 3334444568999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 001580 818 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 887 (1050)
Q Consensus 818 l~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 887 (1050)
+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++++.. ||++++|++|++++.|+++++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999999988653 7899999999999877 999999999999999988775
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=369.04 Aligned_cols=219 Identities=25% Similarity=0.405 Sum_probs=183.6
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccC-----CccEEEECCeecCC--CChH
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FGLM 737 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p-----~~G~i~~~g~~i~~--~~~~ 737 (1050)
.++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .+..
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 7 IIETENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred eEEEeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 4999999999964 3699999999999999999999999999999999999997 48999999998853 2345
Q ss_pred HHhhheEEEcCCcccccccHHHhcccCCC----CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001580 738 DLRKILGIIPQSPVLFSGTVRFNLDPFSE----HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 809 (1050)
Q Consensus 738 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~----~~----~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~q 809 (1050)
.+|+.++|+||++.+|..|+++|+.+... .. ++.+.++++.+++.+.+ .......+.+|||||||
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgG~~q 157 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV-------KDKLNTNALSLSGGQQQ 157 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh-------HHHHhCCcccCCHHHHH
Confidence 67888999999999888899999975321 11 12234444444432211 22334556789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001580 810 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 888 (1050)
Q Consensus 810 rl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 888 (1050)
|++|||||+.+|++|||||||++||+.+...+++.|+++.+++|+|++||+++++.. ||||++|++|++++.|+++++.
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 158 RLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998767899999999999876 9999999999999999999997
Q ss_pred hcCC
Q 001580 889 SNEG 892 (1050)
Q Consensus 889 ~~~~ 892 (1050)
..+.
T Consensus 238 ~~~~ 241 (254)
T PRK14273 238 FNPK 241 (254)
T ss_pred hCCC
Confidence 6543
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=353.83 Aligned_cols=189 Identities=29% Similarity=0.418 Sum_probs=165.5
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeEE-------eCcEEEEe
Q 001580 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------RGTVAYVP 112 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~-------~~~i~~v~ 112 (1050)
..+++++++++|+. ..+|+|+||+|++||+++|+||||||||||||+|+|+.+|++|.+..- ...+|||+
T Consensus 2 ~~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vF 78 (248)
T COG1116 2 ALLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVF 78 (248)
T ss_pred ceEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEe
Confidence 35899999999974 579999999999999999999999999999999999999998876542 22599999
Q ss_pred cCCCCCc-ccHHHHhccCCCCC-------HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHcc
Q 001580 113 QVSWIFN-ATVRDNILFGSAFE-------PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYS 184 (1050)
Q Consensus 113 Q~~~l~~-~TV~eni~~g~~~~-------~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~ 184 (1050)
|++.|+. .||+|||.|+.... .++..+.++..+|....+.+| .+|||||||||+|||||+.
T Consensus 79 Q~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiARAL~~ 147 (248)
T COG1116 79 QEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIARALAT 147 (248)
T ss_pred ccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHHHHhc
Confidence 9999875 79999999985431 234566788888888888877 4899999999999999999
Q ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhh-cCEEEEEcCC
Q 001580 185 NSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEG 242 (1050)
Q Consensus 185 ~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~-~d~i~~l~~G 242 (1050)
+|+||+|||||++||+.++..+.+.+.+.+. .++|+|+||||.+++-. +|||++|.++
T Consensus 148 ~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 148 RPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred CCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 9999999999999999999999998888654 58999999999998754 7999999984
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=375.39 Aligned_cols=218 Identities=22% Similarity=0.407 Sum_probs=184.0
Q ss_pred EEEEEEEEEeCCCC---CCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCC----ChHH
Q 001580 666 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF----GLMD 738 (1050)
Q Consensus 666 i~~~~v~~~y~~~~---~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~----~~~~ 738 (1050)
++++||+++|+++. +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996421 3699999999999999999999999999999999999999999999999998653 2356
Q ss_pred HhhheEEEcCCc--ccccccHHHhcccCCC---CCHHHHHHHHHHhcHHHHHHHccCCcch-hhhcCCCCCChhHHHHHH
Q 001580 739 LRKILGIIPQSP--VLFSGTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDA-QVSEAGENFSVGQRQLLS 812 (1050)
Q Consensus 739 ~r~~i~~v~Q~~--~lf~~tv~~nl~~~~~---~~~~~~~~~l~~~~~~~~i~~~p~gl~t-~v~~~~~~LSgGq~qrl~ 812 (1050)
+|++||||||+| .+|..|+.+|+.+... .+..+..+ .+.++++. .|+++ .....+.+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~l~~--~gL~~~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKN-----YAHRLLMD--LGFSRDVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHH-----HHHHHHHH--cCCChhhhhCCcccCCHHHHHHHH
Confidence 788999999997 5787899999975321 12222221 12334444 46763 456678899999999999
Q ss_pred HHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001580 813 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889 (1050)
Q Consensus 813 lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 889 (1050)
|||||+.+|+||||||||++||+.+...+.+.|+++. .++|||+|||+++++.. ||||++|++|++++.|+++++.+
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999864 37999999999999865 99999999999999999999875
Q ss_pred c
Q 001580 890 N 890 (1050)
Q Consensus 890 ~ 890 (1050)
.
T Consensus 236 ~ 236 (286)
T PRK13646 236 D 236 (286)
T ss_pred C
Confidence 3
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=368.17 Aligned_cols=219 Identities=25% Similarity=0.397 Sum_probs=184.8
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhcccc-----CCccEEEECCeecCC--CCh
Q 001580 664 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGL 736 (1050)
Q Consensus 664 ~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~-----p~~G~i~~~g~~i~~--~~~ 736 (1050)
+.++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 12 ~~l~~~~l~~~~~~~--~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~ 89 (260)
T PRK10744 12 SKIQVRNLNFYYGKF--HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI 89 (260)
T ss_pred ceEEEEEEEEEeCCe--EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence 459999999999643 69999999999999999999999999999999999986 589999999999853 345
Q ss_pred HHHhhheEEEcCCcccccccHHHhcccCC----CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHH
Q 001580 737 MDLRKILGIIPQSPVLFSGTVRFNLDPFS----EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 808 (1050)
Q Consensus 737 ~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~----~~~~----~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~ 808 (1050)
..+|++++|+||++.+|..|+++|+.+.. ..+. +++.++++..++.. ++....+....+||||||
T Consensus 90 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~Gq~ 162 (260)
T PRK10744 90 ALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWN-------EVKDKLHQSGYSLSGGQQ 162 (260)
T ss_pred HHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCCh-------hhHHHHhcCCCCCCHHHH
Confidence 56788999999999998899999997531 1121 22334444433321 123445666788999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 001580 809 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 887 (1050)
Q Consensus 809 qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 887 (1050)
||++|||||+.+|+||||||||++||+.+++.+.+.|+++.++.|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 163 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (260)
T PRK10744 163 QRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTI 242 (260)
T ss_pred HHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998667899999999999876 999999999999999999998
Q ss_pred hhcC
Q 001580 888 LSNE 891 (1050)
Q Consensus 888 ~~~~ 891 (1050)
....
T Consensus 243 ~~~~ 246 (260)
T PRK10744 243 FTKP 246 (260)
T ss_pred HhCC
Confidence 7643
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-42 Score=351.89 Aligned_cols=220 Identities=27% Similarity=0.443 Sum_probs=191.2
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHH-hhheE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKILG 744 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~-r~~i~ 744 (1050)
+++++++++|++- .+++||||++++||++||+|||||||||++|+|+|+|+|++|+|.++|.||..++++.. |..|+
T Consensus 5 L~v~~l~k~FGGl--~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 5 LEVRGLSKRFGGL--TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred eeeccceeecCCE--EEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence 7899999999753 79999999999999999999999999999999999999999999999999999999875 55699
Q ss_pred EEcCCcccccc-cHHHhcccCCC------------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 001580 745 IIPQSPVLFSG-TVRFNLDPFSE------------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 811 (1050)
Q Consensus 745 ~v~Q~~~lf~~-tv~~nl~~~~~------------~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl 811 (1050)
--+|.+.+|.+ ||.||+..... ....+..++.+ .+.++++. .|++...++...+||+|||+||
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e--~A~~~Le~--vgL~~~a~~~A~~LsyG~qR~L 158 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARE--RARELLEF--VGLGELADRPAGNLSYGQQRRL 158 (250)
T ss_pred eecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHH--HHHHHHHH--cCCchhhcchhhcCChhHhHHH
Confidence 99999999976 99999853211 00011122222 23445555 4788888888899999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001580 812 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 888 (1050)
Q Consensus 812 ~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 888 (1050)
.|||||+.+|++||||||.+||.+.....+.+.|+++.+ +.|+++|.|||+.+.. ||||+||+.|+++++|+|+|+.
T Consensus 159 EIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~ 238 (250)
T COG0411 159 EIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVR 238 (250)
T ss_pred HHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHh
Confidence 999999999999999999999999999999999999874 4899999999999988 9999999999999999999998
Q ss_pred hcC
Q 001580 889 SNE 891 (1050)
Q Consensus 889 ~~~ 891 (1050)
+++
T Consensus 239 ~dp 241 (250)
T COG0411 239 NNP 241 (250)
T ss_pred cCH
Confidence 764
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=377.30 Aligned_cols=218 Identities=22% Similarity=0.347 Sum_probs=179.9
Q ss_pred EEEEEEEEEeCCCC---CCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCC---------
Q 001580 666 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK--------- 733 (1050)
Q Consensus 666 i~~~~v~~~y~~~~---~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~--------- 733 (1050)
|+++||+++|++.. .++|+|+||+|.+||++||+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 78999999996432 259999999999999999999999999999999999999999999999887632
Q ss_pred ---------------CChHHHhhheEEEcCCc--ccccccHHHhcccCCC---CCHHHHHHHHHHhcHHHHHHHccCCcc
Q 001580 734 ---------------FGLMDLRKILGIIPQSP--VLFSGTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLD 793 (1050)
Q Consensus 734 ---------------~~~~~~r~~i~~v~Q~~--~lf~~tv~~nl~~~~~---~~~~~~~~~l~~~~~~~~i~~~p~gl~ 793 (1050)
.+...+|+.||||||+| .+|..||++||.+... ...++..+ .+.+.++. .|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~l~~--~gL~ 155 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKK-----RAAKYIEL--VGLD 155 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHH-----HHHHHHHH--cCCC
Confidence 13456788999999986 5777899999975421 22222211 11223333 2443
Q ss_pred -hhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEE
Q 001580 794 -AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRI 870 (1050)
Q Consensus 794 -t~v~~~~~~LSgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i 870 (1050)
........+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .++|||+|||+++.+.. ||||
T Consensus 156 ~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv 235 (305)
T PRK13651 156 ESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRT 235 (305)
T ss_pred hhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEE
Confidence 34556667899999999999999999999999999999999999999999998864 47999999999998866 9999
Q ss_pred EEEeCCEEEEecChhHHhhc
Q 001580 871 LLLDSGRVLEYDTPEELLSN 890 (1050)
Q Consensus 871 ~vl~~G~i~~~g~~~el~~~ 890 (1050)
++|++|++++.|+++++.+.
T Consensus 236 ~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 236 IFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred EEEECCEEEEECCHHHHhcC
Confidence 99999999999999998754
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=375.27 Aligned_cols=218 Identities=28% Similarity=0.409 Sum_probs=181.4
Q ss_pred EEEEEEEEEeCCCC---CCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCC----CChHH
Q 001580 666 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK----FGLMD 738 (1050)
Q Consensus 666 i~~~~v~~~y~~~~---~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~----~~~~~ 738 (1050)
++++|++++|++.. .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996421 369999999999999999999999999999999999999999999999999863 23456
Q ss_pred HhhheEEEcCCc--ccccccHHHhcccCCC---CCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHH
Q 001580 739 LRKILGIIPQSP--VLFSGTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLS 812 (1050)
Q Consensus 739 ~r~~i~~v~Q~~--~lf~~tv~~nl~~~~~---~~~~~~~~~l~~~~~~~~i~~~p~gl~-t~v~~~~~~LSgGq~qrl~ 812 (1050)
.|+.||||||+| .+|..|+++|+.+... .+..+..+ .+.+.++. .|++ ......+.+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~--~gL~~~~~~~~~~~LSgGq~qrv~ 155 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQ-----KAREMIEL--VGLPEELLARSPFELSGGQMRRVA 155 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHH--CCCChhhhhCCcccCCHHHHHHHH
Confidence 788899999998 5777899999975321 12222211 12233333 2453 2345566789999999999
Q ss_pred HHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001580 813 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889 (1050)
Q Consensus 813 lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 889 (1050)
|||||+.+|++|||||||++||+.+...+.+.|+++.+ +.|||+|||+++.+.. ||||++|++|++++.|+++++.+
T Consensus 156 lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 156 IAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999999998753 7899999999999876 99999999999999999999875
Q ss_pred c
Q 001580 890 N 890 (1050)
Q Consensus 890 ~ 890 (1050)
.
T Consensus 236 ~ 236 (290)
T PRK13634 236 D 236 (290)
T ss_pred C
Confidence 3
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=367.66 Aligned_cols=217 Identities=28% Similarity=0.446 Sum_probs=183.2
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccC-----CccEEEECCeecCCCChHHHh
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKFGLMDLR 740 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p-----~~G~i~~~g~~i~~~~~~~~r 740 (1050)
++++||+++|++. ++++|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+...+|
T Consensus 4 l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 81 (250)
T PRK14247 4 IEIRDLKVSFGQV--EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELR 81 (250)
T ss_pred EEEEeeEEEECCe--eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHh
Confidence 8999999999653 699999999999999999999999999999999999974 699999999999887777888
Q ss_pred hheEEEcCCcccc-cccHHHhcccCCC-----CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001580 741 KILGIIPQSPVLF-SGTVRFNLDPFSE-----HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 810 (1050)
Q Consensus 741 ~~i~~v~Q~~~lf-~~tv~~nl~~~~~-----~~----~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qr 810 (1050)
+.|+|+||++.+| ..|+++|+.+... .. .+++.++++..++.+.+ .........+||||||||
T Consensus 82 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~qr 154 (250)
T PRK14247 82 RRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEV-------KDRLDAPAGKLSGGQQQR 154 (250)
T ss_pred ccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCCcccCCHHHHHH
Confidence 8999999999765 5699999964211 01 12233444444332211 123445567899999999
Q ss_pred HHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001580 811 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889 (1050)
Q Consensus 811 l~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 889 (1050)
++|||||+.+|+||||||||++||+.++..+.+.|+++.+++|+|++||+++++.. ||+|++|++|++++.|+++++.+
T Consensus 155 v~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14247 155 LCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFT 234 (250)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHHc
Confidence 99999999999999999999999999999999999997678999999999999865 99999999999999999999876
Q ss_pred cC
Q 001580 890 NE 891 (1050)
Q Consensus 890 ~~ 891 (1050)
..
T Consensus 235 ~~ 236 (250)
T PRK14247 235 NP 236 (250)
T ss_pred CC
Confidence 43
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=374.12 Aligned_cols=213 Identities=31% Similarity=0.508 Sum_probs=181.8
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecC--CCChHHHhhh
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA--KFGLMDLRKI 742 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~--~~~~~~~r~~ 742 (1050)
.|+++|++++|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+.
T Consensus 5 ~l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 38999999999632 36999999999999999999999999999999999999999999999999984 2345567889
Q ss_pred eEEEcCCc--ccccccHHHhcccCC---CCCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001580 743 LGIIPQSP--VLFSGTVRFNLDPFS---EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 813 (1050)
Q Consensus 743 i~~v~Q~~--~lf~~tv~~nl~~~~---~~~~~----~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~l 813 (1050)
+||+||++ .+|..|+++|+.+.. ..+.. .+.++++.. |+.........+||||||||++|
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------gL~~~~~~~~~~LS~G~~qrl~l 152 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRT-----------GIEHLKDKPTHCLSFGQKKRVAI 152 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHC-----------CChhhhhCCcccCCHHHHHHHHH
Confidence 99999998 467889999997521 11222 233333333 44444556678899999999999
Q ss_pred HHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001580 814 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889 (1050)
Q Consensus 814 Arall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 889 (1050)
||||+.+|+||||||||++||+.+...+.+.|+++.+ ++|||++||+++.+.. |||+++|++|++++.|+++++.+
T Consensus 153 araL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 153 AGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999998753 7899999999999975 99999999999999999999875
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=365.26 Aligned_cols=215 Identities=29% Similarity=0.460 Sum_probs=182.3
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHH-hhheE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKILG 744 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~-r~~i~ 744 (1050)
++++||+++|++. ++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGKR--KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCCE--EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 4789999999643 69999999999999999999999999999999999999999999999999887766553 56799
Q ss_pred EEcCCcccccc-cHHHhcccCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccC
Q 001580 745 IIPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 820 (1050)
Q Consensus 745 ~v~Q~~~lf~~-tv~~nl~~~~~---~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~ 820 (1050)
|+||++.+|.. |+++|+.+... ....+.. ..+.++++.+ |++........+||||||||++|||||+.+
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 151 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKERE-----EKLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALATN 151 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999998886 99999974311 1111111 1233444443 566666777789999999999999999999
Q ss_pred CCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001580 821 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889 (1050)
Q Consensus 821 p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 889 (1050)
|++|||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 152 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 152 PKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 99999999999999999999999998865 47899999999998876 99999999999999999988754
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-41 Score=369.09 Aligned_cols=218 Identities=26% Similarity=0.426 Sum_probs=183.9
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccC-----CccEEEECCeecCC--CCh
Q 001580 664 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FGL 736 (1050)
Q Consensus 664 ~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p-----~~G~i~~~g~~i~~--~~~ 736 (1050)
+.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 18 ~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~ 95 (267)
T PRK14235 18 IKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDV 95 (267)
T ss_pred ceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccch
Confidence 46999999999964 3699999999999999999999999999999999999975 89999999999864 345
Q ss_pred HHHhhheEEEcCCcccccccHHHhcccCC---CC--C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhH
Q 001580 737 MDLRKILGIIPQSPVLFSGTVRFNLDPFS---EH--S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 807 (1050)
Q Consensus 737 ~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~--~----~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq 807 (1050)
..+|+.++|+||++.+|..|+.+|+.+.. .. . .+++.++++..++.+.+ ....+..+.+|||||
T Consensus 96 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq 168 (267)
T PRK14235 96 VELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEV-------KDRLHEPGTGLSGGQ 168 (267)
T ss_pred HHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhh-------hHHhhCCcccCCHHH
Confidence 56788999999999999889999997421 10 1 12234444444443221 123455667899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhH
Q 001580 808 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 886 (1050)
Q Consensus 808 ~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~e 886 (1050)
|||++|||||+.+|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 169 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 248 (267)
T PRK14235 169 QQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEK 248 (267)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987667899999999999976 99999999999999999999
Q ss_pred Hhhc
Q 001580 887 LLSN 890 (1050)
Q Consensus 887 l~~~ 890 (1050)
+...
T Consensus 249 ~~~~ 252 (267)
T PRK14235 249 MFTN 252 (267)
T ss_pred HHhC
Confidence 8754
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=363.50 Aligned_cols=206 Identities=28% Similarity=0.407 Sum_probs=171.8
Q ss_pred EEEEEEEEEeCCCC--CCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHH----H
Q 001580 666 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD----L 739 (1050)
Q Consensus 666 i~~~~v~~~y~~~~--~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~----~ 739 (1050)
++++||+++|++.. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...++.. .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999996421 36999999999999999999999999999999999999999999999999998766432 3
Q ss_pred hhheEEEcCCcccccc-cHHHhcccCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001580 740 RKILGIIPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 815 (1050)
Q Consensus 740 r~~i~~v~Q~~~lf~~-tv~~nl~~~~~---~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAr 815 (1050)
++.++|+||++.+|.. |+++|+.+... ....+. ...+.++++.+ |++........+||||||||++|||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~ 153 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKER-----RERAEELLERV--GLGDRLNHYPSELSGGQQQRVAIAR 153 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHH-----HHHHHHHHHHc--CCchhhhcChhhcCHHHHHHHHHHH
Confidence 5679999999998876 99999975321 111111 11233444443 5555566667789999999999999
Q ss_pred HHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhhcCEEEEEeCCEE
Q 001580 816 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRV 878 (1050)
Q Consensus 816 all~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i 878 (1050)
||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|||+|||+++++..||++++|++|++
T Consensus 154 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 154 ALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 99999999999999999999999999999998754 7899999999999878999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=341.61 Aligned_cols=460 Identities=19% Similarity=0.259 Sum_probs=307.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 394 QVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTF 473 (1050)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~ 473 (1050)
.++.+.+.+......+.....++|.++.++++..|+.-+++.+.++++.++++|+.+|. +-...+..+.+.....+++.
T Consensus 61 f~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~IS-f~~s~lp~~~qa~il~l~s~ 139 (546)
T COG4615 61 FMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNIS-FAFSRLPELVQAIILTLGSA 139 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhccccccee-ehHhhhHHHHHHHHHHHHHH
Confidence 33445556666777888999999999999999999999999999999999999999887 22333445555555556666
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHchHHHHHHhchHHH--HHHHHH---
Q 001580 474 VLIGIVSTMSLWA-IMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDR--MADING--- 547 (1050)
Q Consensus 474 ~~~~~~~~~~~~~-~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ira~~~~~~--~~~~~~--- 547 (1050)
...+++++.++.+ ++.+++.+..-+....+..+ .-+...+....+.+.+...+.|.+..+..+...+ ..+.+.
T Consensus 140 aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k-~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a 218 (546)
T COG4615 140 AYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYK-HMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDA 218 (546)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcch
Confidence 6666666544332 22222222222211111111 1112223345577888889999999887754332 222221
Q ss_pred -HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001580 548 -KSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASL 626 (1050)
Q Consensus 548 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 626 (1050)
...+...+..........|..+.+..+.++.+|+.... ....++ .+.++ +...+.+..++..+..+...
T Consensus 219 ~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~----~w~st~---~a~ti---vlvlLflr~pL~s~vgilP~ 288 (546)
T COG4615 219 QEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSL----GWASTN---VAATI---VLVLLFLRTPLLSAVGILPT 288 (546)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----ccchhh---HHHHH---HHHHHHHhhHHHHHHhhhhH
Confidence 11112222223322344455554444444443333211 111111 11111 11222334445555555555
Q ss_pred HHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCH
Q 001580 627 AENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGK 706 (1050)
Q Consensus 627 ~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGK 706 (1050)
+..+..+.+++.++...|..+. -....+.|.| ..|+++||.|.|.+.. --+.-||++|++||+|-|+|.|||||
T Consensus 289 l~~AqvA~~kiakle~~~~~a~--~~~~q~~p~~---~~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFliG~NGsGK 362 (546)
T COG4615 289 LLTAQVAFNKIAKLELAPYKAD--FPRPQAFPDW---KTLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLIGGNGSGK 362 (546)
T ss_pred HHHHHHHHHHHHHhhcCCcccc--CCCCCcCCcc---cceeeeeeeeccCccc-ceecceeeEEecCcEEEEECCCCCcH
Confidence 5667788888887755332221 1112223334 3599999999997542 35788999999999999999999999
Q ss_pred HHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEEEcCCcccccccHHHhcccCCCCCHHHHHHHHHHhcHHHHHH
Q 001580 707 SSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIR 786 (1050)
Q Consensus 707 STll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~~~~~~i~ 786 (1050)
||++++|+|+|.|++|+|++||.++...+++++|+-++-|+-|.+||+.++- +-...+.+.+..-+.+..+.....
T Consensus 363 ST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~----~e~~as~q~i~~~LqrLel~~kts 438 (546)
T COG4615 363 STLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLG----PEGKASPQLIEKWLQRLELAHKTS 438 (546)
T ss_pred HHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhC----CccCCChHHHHHHHHHHHHhhhhc
Confidence 9999999999999999999999999999999999999999999999986552 112244555555555544433222
Q ss_pred HccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhh
Q 001580 787 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTI 864 (1050)
Q Consensus 787 ~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~ 864 (1050)
-....+. ...||-|||+|+++--|++.+.+|++|||=-+.-||.=++.++..+.-.. .|+||+.||||-...
T Consensus 439 l~d~~fs------~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF 512 (546)
T COG4615 439 LNDGRFS------NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYF 512 (546)
T ss_pred ccCCccc------ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhh
Confidence 2111111 13699999999999999999999999999999999999999988776543 589999999999999
Q ss_pred hhcCEEEEEeCCEEEEe
Q 001580 865 IDCDRILLLDSGRVLEY 881 (1050)
Q Consensus 865 ~~~d~i~vl~~G~i~~~ 881 (1050)
..|||++.|++|++++.
T Consensus 513 ~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 513 IHADRLLEMRNGQLSEL 529 (546)
T ss_pred hhHHHHHHHhcCceeec
Confidence 99999999999999885
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=377.95 Aligned_cols=216 Identities=29% Similarity=0.443 Sum_probs=181.7
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheE
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 744 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 744 (1050)
.|+++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ....|+++|
T Consensus 4 ~i~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGDK--VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCCe--EEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEE
Confidence 48999999999643 699999999999999999999999999999999999999999999999998653 345788899
Q ss_pred EEcCCccccc-ccHHHhcccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccC
Q 001580 745 IIPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 820 (1050)
Q Consensus 745 ~v~Q~~~lf~-~tv~~nl~~~~---~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~ 820 (1050)
|+||++.++. .|+++|+.++. .....+..+. +.++++. .|+.........+||||||||++|||||+.+
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~ll~~--~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 153 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAV-----IPSLLEF--ARLESKADVRVALLSGGMKRRLTLARALIND 153 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHH--CCChhHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 9999998885 59999996421 1222222111 1223333 2444445556678999999999999999999
Q ss_pred CCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001580 821 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890 (1050)
Q Consensus 821 p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 890 (1050)
|++|||||||+|||+.++..+++.|+++. +++|||++||+++++.. ||+|++|++|++++.|+++++...
T Consensus 154 p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 154 PQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999999999999864 47899999999999976 999999999999999999998754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=358.79 Aligned_cols=198 Identities=26% Similarity=0.448 Sum_probs=168.0
Q ss_pred EEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEEE
Q 001580 667 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 746 (1050)
Q Consensus 667 ~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v 746 (1050)
+++|++++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...+++++|+
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 367999999642 369999999999999999999999999999999999999999999999998853 3567789999
Q ss_pred cCCc--ccccccHHHhcccCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 001580 747 PQSP--VLFSGTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 821 (1050)
Q Consensus 747 ~Q~~--~lf~~tv~~nl~~~~~---~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p 821 (1050)
||++ .++..|+++|+.+... ....++.++++..++.++ .......||||||||++|||||+.+|
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~laral~~~p 145 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYAL-----------KERHPLSLSGGQKQRLAIAAALLSGK 145 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchh-----------cCCCchhCCHHHHHHHHHHHHHHhCC
Confidence 9998 3667899999975422 112345555555555443 33444689999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEE
Q 001580 822 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVL 879 (1050)
Q Consensus 822 ~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~ 879 (1050)
++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|+++
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 146 DLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999863 57899999999999976 9999999999974
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=358.25 Aligned_cols=202 Identities=27% Similarity=0.428 Sum_probs=173.6
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
++++|++++|++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ..+++.++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 468999999964 3799999999999999999999999999999999999999999999999988654 456788999
Q ss_pred EcCCccccc-ccHHHhcccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 001580 746 IPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 821 (1050)
Q Consensus 746 v~Q~~~lf~-~tv~~nl~~~~---~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p 821 (1050)
+||++.+|. .|+++|+.++. ...++++.++++..++.+.+ ......||||||||++||||++.+|
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al~~~p 145 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSA-----------KKKVKGFSLGMKQRLGIALALLGNP 145 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHH-----------hhhHhhCCHHHHHHHHHHHHHhcCC
Confidence 999998875 69999996432 12344555566665554443 3344679999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001580 822 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 882 (1050)
Q Consensus 822 ~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 882 (1050)
++|||||||++||+.+++.+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 146 DLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999865 47899999999999976 9999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-41 Score=372.10 Aligned_cols=213 Identities=25% Similarity=0.438 Sum_probs=182.3
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
++++|++++|++. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 4 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 4 IETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred EEEEEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 7899999999643 259999999999999999999999999999999999999999999999999987777778889999
Q ss_pred EcCCcc--cccccHHHhcccCC---CCCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001580 746 IPQSPV--LFSGTVRFNLDPFS---EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 816 (1050)
Q Consensus 746 v~Q~~~--lf~~tv~~nl~~~~---~~~~~----~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAra 816 (1050)
+||++. +|..|+.+|+.+.. ....+ .+.++++..++ ..........||||||||++||||
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~Gq~qrl~lara 151 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGL-----------EELRDRVPHHLSGGEKKRVAIAGV 151 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCC-----------hhHhcCCcccCCHHHHHHHHHHHH
Confidence 999983 67789999996421 12222 23334444444 334444557899999999999999
Q ss_pred HccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001580 817 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890 (1050)
Q Consensus 817 ll~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 890 (1050)
|+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|||++||+++++.. ||||++|++|++++.|+++++...
T Consensus 152 L~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 152 IAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 9999999999999999999999999999998653 7899999999999865 999999999999999999999753
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=384.68 Aligned_cols=216 Identities=24% Similarity=0.406 Sum_probs=184.2
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheE
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 744 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 744 (1050)
.++++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...++ .++.||
T Consensus 19 ~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig 94 (377)
T PRK11607 19 LLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPIN 94 (377)
T ss_pred eEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCEE
Confidence 4999999999964 369999999999999999999999999999999999999999999999999987664 567899
Q ss_pred EEcCCcccccc-cHHHhcccCCC---CCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001580 745 IIPQSPVLFSG-TVRFNLDPFSE---HSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 816 (1050)
Q Consensus 745 ~v~Q~~~lf~~-tv~~nl~~~~~---~~~~----~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAra 816 (1050)
|+||++.+|.. ||.+|+.+... .... ++.+.++..+ +.........+|||||||||+||||
T Consensus 95 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~-----------L~~~~~~~~~~LSgGq~QRVaLARA 163 (377)
T PRK11607 95 MMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVH-----------MQEFAKRKPHQLSGGQRQRVALARS 163 (377)
T ss_pred EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------CchhhcCChhhCCHHHHHHHHHHHH
Confidence 99999999976 99999975321 1222 2333344433 4444455557899999999999999
Q ss_pred HccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 001580 817 LLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 893 (1050)
Q Consensus 817 ll~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~ 893 (1050)
|+.+|++|||||||++||+.++..+.+.|+++. .+.|+|+||||++++.. ||+|++|++|++++.|+++++..++..
T Consensus 164 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~~ 243 (377)
T PRK11607 164 LAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTT 243 (377)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCcc
Confidence 999999999999999999999999998887754 37899999999999866 999999999999999999999876654
Q ss_pred hH
Q 001580 894 SF 895 (1050)
Q Consensus 894 ~~ 895 (1050)
.|
T Consensus 244 ~~ 245 (377)
T PRK11607 244 RY 245 (377)
T ss_pred HH
Confidence 33
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=367.87 Aligned_cols=218 Identities=28% Similarity=0.418 Sum_probs=182.4
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccC-----CccEEEECCeecC--CCChH
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIA--KFGLM 737 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p-----~~G~i~~~g~~i~--~~~~~ 737 (1050)
.++++|++++|++. ++|+|+||+|.+||++||+||||||||||+++|+|+++| ++|+|.++|.++. ..+..
T Consensus 4 ~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 4 AIETVNLRVYYGSN--HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred eEEEEeEEEEeCCe--eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 38999999999643 699999999999999999999999999999999999987 4999999999986 44555
Q ss_pred HHhhheEEEcCCcccccc-cHHHhcccCC---CC--CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhH
Q 001580 738 DLRKILGIIPQSPVLFSG-TVRFNLDPFS---EH--SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 807 (1050)
Q Consensus 738 ~~r~~i~~v~Q~~~lf~~-tv~~nl~~~~---~~--~~----~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq 807 (1050)
.+|++++|+||++.+|.. |+.+|+.+.. .. .. +.+.++++..++... +.........+|||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~G~ 154 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDE-------VKDRLNDYPSNLSGGQ 154 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccc-------hhhhhccChhhCCHHH
Confidence 678899999999999875 9999996421 10 11 123333333333211 1223455667899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhH
Q 001580 808 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 886 (1050)
Q Consensus 808 ~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~e 886 (1050)
|||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++++.. ||+|++|++|++++.|++++
T Consensus 155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (253)
T PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRK 234 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999997667999999999999876 99999999999999999999
Q ss_pred HhhcC
Q 001580 887 LLSNE 891 (1050)
Q Consensus 887 l~~~~ 891 (1050)
+....
T Consensus 235 ~~~~~ 239 (253)
T PRK14267 235 VFENP 239 (253)
T ss_pred HHhCC
Confidence 87543
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=367.87 Aligned_cols=219 Identities=23% Similarity=0.432 Sum_probs=184.2
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhcccc-----CCccEEEECCeecCC--CCh
Q 001580 664 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGL 736 (1050)
Q Consensus 664 ~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~-----p~~G~i~~~g~~i~~--~~~ 736 (1050)
..++++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++.. .++
T Consensus 12 ~~l~i~nl~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~ 89 (269)
T PRK14259 12 IIISLQNVTISYGTF--EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDP 89 (269)
T ss_pred ceEEEEeEEEEECCE--EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCH
Confidence 359999999999653 69999999999999999999999999999999999987 689999999999853 456
Q ss_pred HHHhhheEEEcCCcccccccHHHhcccCCC---CC---HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001580 737 MDLRKILGIIPQSPVLFSGTVRFNLDPFSE---HS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 810 (1050)
Q Consensus 737 ~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~---~~---~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qr 810 (1050)
..+|+.++|+||++.+|..|+++|+.+... .. ++++.++++.+++.. +++........+||||||||
T Consensus 90 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~qr 162 (269)
T PRK14259 90 VEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWD-------ECKDKLNESGYSLSGGQQQR 162 (269)
T ss_pred HHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcc-------hhhhhhCCCcccCCHHHHHH
Confidence 677888999999999998899999975422 11 122333344333221 23344566677899999999
Q ss_pred HHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeC-----------CEE
Q 001580 811 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDS-----------GRV 878 (1050)
Q Consensus 811 l~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~-----------G~i 878 (1050)
++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++++.. ||++++|++ |++
T Consensus 163 l~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~ 242 (269)
T PRK14259 163 LCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYL 242 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceE
Confidence 99999999999999999999999999999999999988667899999999999876 999999996 679
Q ss_pred EEecChhHHhhcC
Q 001580 879 LEYDTPEELLSNE 891 (1050)
Q Consensus 879 ~~~g~~~el~~~~ 891 (1050)
++.|+++++...+
T Consensus 243 ~~~~~~~~~~~~~ 255 (269)
T PRK14259 243 VEFNETKKIFNSP 255 (269)
T ss_pred EEeCCHHHHHhCc
Confidence 9999999997643
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-41 Score=363.75 Aligned_cols=215 Identities=29% Similarity=0.452 Sum_probs=182.8
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
++++|++++|++ +++|+|+||+|.+||++||+||||||||||+++|+|+++|++|+|.++|.++...+.. .++.++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~-~~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRA-ALARLGV 78 (236)
T ss_pred EEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChh-hhhhEEE
Confidence 789999999964 3699999999999999999999999999999999999999999999999998776543 4458999
Q ss_pred EcCCcccc-cccHHHhcccCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 001580 746 IPQSPVLF-SGTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 821 (1050)
Q Consensus 746 v~Q~~~lf-~~tv~~nl~~~~~---~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p 821 (1050)
+||++.++ ..|+++|+.+... ....+.. ..+.++++. .|++........+||||||||++|||||+++|
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~--~gl~~~~~~~~~~LS~G~~qrl~laral~~~p 151 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEAR-----ERIAALLAR--LGLAERADDKVRELNGGHRRRVEIARALLHRP 151 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHH--cCChhhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999875 5699999965321 1111111 123344444 36666667777899999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001580 822 KILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 890 (1050)
Q Consensus 822 ~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 890 (1050)
+||||||||++||+.+++.+.+.|+++. .++|+|++||+++.+..||++++|++|++++.|+++++...
T Consensus 152 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 152 ALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 9999999999999999999999999875 37899999999999977999999999999999999988764
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=359.34 Aligned_cols=202 Identities=27% Similarity=0.451 Sum_probs=172.9
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
|+++|++++|++. ++++|+||+|++| ++||+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++|
T Consensus 1 i~~~~~~~~~~~~--~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGKK--RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECCE--EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEE
Confidence 4789999999643 6999999999999 99999999999999999999999999999999999987765 667889999
Q ss_pred EcCCcccccc-cHHHhcccCC---CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHH
Q 001580 746 IPQSPVLFSG-TVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 817 (1050)
Q Consensus 746 v~Q~~~lf~~-tv~~nl~~~~---~~~----~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAral 817 (1050)
+||++.+|.. |+++|+.+.. ... .+++.++++..++.++ ......+||||||||++|||||
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDR-----------AKKKIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHH-----------HhCchhhCCHHHHHHHHHHHHH
Confidence 9999998876 9999986421 111 1233444444444333 3344568999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001580 818 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 882 (1050)
Q Consensus 818 l~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 882 (1050)
+.+|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++++.. |||+++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999998767999999999999976 9999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-41 Score=377.96 Aligned_cols=226 Identities=23% Similarity=0.375 Sum_probs=185.5
Q ss_pred cEEEEEEEEEeCCC-----------CCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCC
Q 001580 665 SIKFEDVVLRYRPE-----------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK 733 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~-----------~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~ 733 (1050)
.++++|++++|+.. ..++++||||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 48999999999531 2369999999999999999999999999999999999999999999999999988
Q ss_pred CChHH---HhhheEEEcCCc--cccc-ccHHHhcccC----C-CCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCC
Q 001580 734 FGLMD---LRKILGIIPQSP--VLFS-GTVRFNLDPF----S-EHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGE 801 (1050)
Q Consensus 734 ~~~~~---~r~~i~~v~Q~~--~lf~-~tv~~nl~~~----~-~~~~~~~~~~l~~~~~~~~i~~~p~gl~-t~v~~~~~ 801 (1050)
.+... +|++|+||||+| .++. .||.+|+.+. . ..+..+..+. +.+.++.+ |+. ......+.
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~-----~~~~l~~v--gl~~~~~~~~p~ 160 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDR-----VKAMMLKV--GLLPNLINRYPH 160 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHH-----HHHHHHHc--CCChHHhcCCcc
Confidence 77543 577899999998 4664 5999998531 1 1222222211 12233332 332 23456667
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEE
Q 001580 802 NFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRV 878 (1050)
Q Consensus 802 ~LSgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i 878 (1050)
+||||||||++|||||+.+|++||+||||++||+.++..+.+.|+++.+ +.|+|+||||++.+.. ||||++|++|+|
T Consensus 161 ~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~i 240 (331)
T PRK15079 161 EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHA 240 (331)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999998753 7899999999999987 999999999999
Q ss_pred EEecChhHHhhcCCChHHH
Q 001580 879 LEYDTPEELLSNEGSSFSK 897 (1050)
Q Consensus 879 ~~~g~~~el~~~~~~~~~~ 897 (1050)
++.|+++++..+....|..
T Consensus 241 ve~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 241 VELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred EEEcCHHHHHcCCCCHHHH
Confidence 9999999998765444544
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=370.15 Aligned_cols=212 Identities=25% Similarity=0.388 Sum_probs=181.8
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheE
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 744 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 744 (1050)
.++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 11 ~l~i~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 11 TFALRNVSFRVPGR--TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred eEEEeeEEEEECCE--EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 49999999999643 6999999999999999999999999999999999999999999999999998877778888999
Q ss_pred EEcCCcccccc-cHHHhcccCCC--------C---CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001580 745 IIPQSPVLFSG-TVRFNLDPFSE--------H---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 812 (1050)
Q Consensus 745 ~v~Q~~~lf~~-tv~~nl~~~~~--------~---~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~ 812 (1050)
|+||++.++.. |+.+|+.+... . .++++.++++.+++. ........+||||||||++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG~~qrv~ 157 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLK-----------PLAHRLVDSLSGGERQRAW 157 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH-----------HHhcCCcccCCHHHHHHHH
Confidence 99999877654 99999974311 0 112234444444443 3344445689999999999
Q ss_pred HHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001580 813 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889 (1050)
Q Consensus 813 lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 889 (1050)
|||||+.+|+||||||||++||+.+.+.+.+.|+++. .++|+|++||+++++.. ||+|++|++|++++.|+++++..
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 158 IAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 9999999999999999999999999999999999864 37899999999999976 99999999999999999988754
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=358.30 Aligned_cols=203 Identities=29% Similarity=0.472 Sum_probs=174.8
Q ss_pred cEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeEE------------eCcE
Q 001580 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------RGTV 108 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~------------~~~i 108 (1050)
.++++|++|+|+ ++++|+|+||++++|++++|+||||||||||||+|+|.++|.+|.+..- .+.+
T Consensus 2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 478999999997 4689999999999999999999999999999999999999988766431 2359
Q ss_pred EEEecCCCC-CcccHHHHhccCCCC-----------CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHH
Q 001580 109 AYVPQVSWI-FNATVRDNILFGSAF-----------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 176 (1050)
Q Consensus 109 ~~v~Q~~~l-~~~TV~eni~~g~~~-----------~~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv 176 (1050)
|||||.+.. +..||+|-+.+|+.- |.+.+..+++.+++.+..+.. ..+|||||||||
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-----------~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-----------VDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-----------ccccChhHHHHH
Confidence 999999865 588999999998531 122455667777777655432 358999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccc-cCCcEEEEeccCcchhh-hcCEEEEEcCCeEeeccChhhhh
Q 001580 177 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLS 254 (1050)
Q Consensus 177 ~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~-~~g~t~ilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~ 254 (1050)
.|||||+++|++|+||||||+||...+..+++.+.+.. .+|+|+|+|+||+..+. .||++++|++|+++..|++++++
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999888876 46999999999999865 58999999999999999999887
Q ss_pred cCh
Q 001580 255 NNG 257 (1050)
Q Consensus 255 ~~~ 257 (1050)
+.+
T Consensus 228 T~e 230 (258)
T COG1120 228 TEE 230 (258)
T ss_pred CHH
Confidence 653
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=370.48 Aligned_cols=217 Identities=28% Similarity=0.511 Sum_probs=181.8
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCCh-HHHhhheE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL-MDLRKILG 744 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~-~~~r~~i~ 744 (1050)
++++|++++|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++.++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 2 IRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 7899999999633 369999999999999999999999999999999999999999999999999977653 56788899
Q ss_pred EEcCCcc--cccccHHHhcccCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHcc
Q 001580 745 IIPQSPV--LFSGTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 819 (1050)
Q Consensus 745 ~v~Q~~~--lf~~tv~~nl~~~~~---~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~ 819 (1050)
|+||+|. ++..|+.+|+.+... .+..+..+ .+.+.++. .|++......+..||||||||++|||||+.
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~--~gl~~~~~~~~~~LS~G~~qrv~laral~~ 153 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRK-----RVDRALAE--IGLEKYRHRSPKTLSGGQGQCVALAGILTM 153 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHH-----HHHHHHHH--CCCHHHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 9999985 556799999975321 11111111 12223333 245555556667899999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001580 820 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 890 (1050)
Q Consensus 820 ~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 890 (1050)
+|+||||||||++||+.++..+++.|+++. .+.|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 154 ~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 154 EPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999998865 47899999999999977999999999999999999998653
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=363.81 Aligned_cols=212 Identities=25% Similarity=0.398 Sum_probs=176.7
Q ss_pred cEEEEEEEEEeCCCC--CCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHH---H
Q 001580 665 SIKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---L 739 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~--~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~---~ 739 (1050)
.++++||+++|+.+. .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 389999999996432 36999999999999999999999999999999999999999999999999998877643 3
Q ss_pred h-hheEEEcCCcccccc-cHHHhcccC---CCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001580 740 R-KILGIIPQSPVLFSG-TVRFNLDPF---SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 814 (1050)
Q Consensus 740 r-~~i~~v~Q~~~lf~~-tv~~nl~~~---~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lA 814 (1050)
| +.++|+||++.+|.. |+++|+.+. ......+.. ..+.+.++. .|++........+||||||||++||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~--~gl~~~~~~~~~~LSgG~~qrl~la 157 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEIN-----SRALEMLAA--VGLEHRANHRPSELSGGERQRVAIA 157 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHH--cCCchhhhCChhhCCHHHHHHHHHH
Confidence 3 579999999988875 999998642 111111111 112233333 2555555666778999999999999
Q ss_pred HHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhhcCEEEEEeCCEEEEecC
Q 001580 815 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDT 883 (1050)
Q Consensus 815 rall~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~ 883 (1050)
||++.+|+||||||||++||+.+...+.+.|+++. +++|||+|||+++++..+|++++|++|++++.+.
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 158 RALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999864 4789999999999998888999999999998765
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=372.19 Aligned_cols=213 Identities=30% Similarity=0.409 Sum_probs=178.8
Q ss_pred EEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHH----hhh
Q 001580 667 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL----RKI 742 (1050)
Q Consensus 667 ~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~----r~~ 742 (1050)
.++|+++.|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +++
T Consensus 26 ~~~~~~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQT--VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCCc--eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 466888888643 69999999999999999999999999999999999999999999999999987665443 457
Q ss_pred eEEEcCCccccc-ccHHHhcccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001580 743 LGIIPQSPVLFS-GTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 814 (1050)
Q Consensus 743 i~~v~Q~~~lf~-~tv~~nl~~~~---~~~~----~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lA 814 (1050)
++|+||++.+|. .|+++|+.+.. .... +++.++++.. |+.........+||||||||++||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~Gq~qrv~lA 172 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELV-----------GLEGWEHKYPDELSGGMQQRVGLA 172 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCHhHhhCCcccCCHHHHHHHHHH
Confidence 999999999885 59999996421 1111 2233334443 444444555568999999999999
Q ss_pred HHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 001580 815 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 891 (1050)
Q Consensus 815 rall~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~ 891 (1050)
|||+++|+||||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|+++++....
T Consensus 173 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 252 (269)
T cd03294 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNP 252 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCc
Confidence 99999999999999999999999999999998864 37899999999999876 9999999999999999999997654
Q ss_pred C
Q 001580 892 G 892 (1050)
Q Consensus 892 ~ 892 (1050)
.
T Consensus 253 ~ 253 (269)
T cd03294 253 A 253 (269)
T ss_pred C
Confidence 3
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-41 Score=384.62 Aligned_cols=219 Identities=30% Similarity=0.436 Sum_probs=182.3
Q ss_pred EEEEEEEEEeCCCC----------------------CCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccE
Q 001580 666 IKFEDVVLRYRPEL----------------------PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 723 (1050)
Q Consensus 666 i~~~~v~~~y~~~~----------------------~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~ 723 (1050)
|+++||++.|++.. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+
T Consensus 5 i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~ 84 (400)
T PRK10070 5 LEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQ 84 (400)
T ss_pred EEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCE
Confidence 67777777775431 13799999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCChHHH----hhheEEEcCCcccccc-cHHHhcccCCC---CCH----HHHHHHHHHhcHHHHHHHccCC
Q 001580 724 ILIDGFDIAKFGLMDL----RKILGIIPQSPVLFSG-TVRFNLDPFSE---HSD----ADLWEALERAHLKDAIRRNSLG 791 (1050)
Q Consensus 724 i~~~g~~i~~~~~~~~----r~~i~~v~Q~~~lf~~-tv~~nl~~~~~---~~~----~~~~~~l~~~~~~~~i~~~p~g 791 (1050)
|.++|.++...+...+ |++++|+||++.+|.. |+++|+.+... ... +++.++++.. |
T Consensus 85 I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~-----------g 153 (400)
T PRK10070 85 VLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQV-----------G 153 (400)
T ss_pred EEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------C
Confidence 9999999988776553 3579999999999865 99999975321 111 2233334443 4
Q ss_pred cchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cC
Q 001580 792 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CD 868 (1050)
Q Consensus 792 l~t~v~~~~~~LSgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d 868 (1050)
++........+||||||||++|||||+.+|+||||||||++||+.+++.+++.|+++. .++|+|+|||+++++.. ||
T Consensus 154 L~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~D 233 (400)
T PRK10070 154 LENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGD 233 (400)
T ss_pred CChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCC
Confidence 4444555567899999999999999999999999999999999999999999998864 47899999999999876 99
Q ss_pred EEEEEeCCEEEEecChhHHhhcCCChH
Q 001580 869 RILLLDSGRVLEYDTPEELLSNEGSSF 895 (1050)
Q Consensus 869 ~i~vl~~G~i~~~g~~~el~~~~~~~~ 895 (1050)
+|++|++|++++.|+++++...+...|
T Consensus 234 ri~vL~~G~i~~~g~~~~l~~~~~~~~ 260 (400)
T PRK10070 234 RIAIMQNGEVVQVGTPDEILNNPANDY 260 (400)
T ss_pred EEEEEECCEEEecCCHHHHHhCcccHH
Confidence 999999999999999999987654434
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=360.30 Aligned_cols=209 Identities=31% Similarity=0.521 Sum_probs=174.0
Q ss_pred EEEEEEEEEeCCCC--CCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhhe
Q 001580 666 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 743 (1050)
Q Consensus 666 i~~~~v~~~y~~~~--~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i 743 (1050)
++++||+++|++.. .++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .+..+|+.+
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 68999999996431 169999999999999999999999999999999999999999999999999875 445678899
Q ss_pred EEEcCCcccccc-cHHHhcccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHcc
Q 001580 744 GIIPQSPVLFSG-TVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 819 (1050)
Q Consensus 744 ~~v~Q~~~lf~~-tv~~nl~~~~---~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~ 819 (1050)
+|+||++.+|.. |+++|+.+.. .....+.. ..+.+.++.+ |++........+||||||||++||||++.
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~ 153 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELT-----ARLEELADRL--GMEELLDRRVGGFSTGMRQKVAIARALVH 153 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CCHHHHhhhhhhcCHHHHHHHHHHHHHhc
Confidence 999999999885 9999986421 11111111 1122333332 45555556667899999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001580 820 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 882 (1050)
Q Consensus 820 ~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 882 (1050)
+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++++.. ||++++|++|++++.|
T Consensus 154 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 154 DPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999999864 47899999999999876 9999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-41 Score=363.81 Aligned_cols=220 Identities=21% Similarity=0.367 Sum_probs=184.6
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHH-hhheE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKILG 744 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~-r~~i~ 744 (1050)
|+++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.++
T Consensus 3 i~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 3 LYLEGLSVSFDGF--KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred EEEEeeEEEcCCe--EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 7899999999643 69999999999999999999999999999999999999999999999999887766543 45799
Q ss_pred EEcCCcccccc-cHHHhcccCCCCCHH---H---HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHH
Q 001580 745 IIPQSPVLFSG-TVRFNLDPFSEHSDA---D---LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 817 (1050)
Q Consensus 745 ~v~Q~~~lf~~-tv~~nl~~~~~~~~~---~---~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAral 817 (1050)
|+||++.+|.. |+++|+.+....... . .........+.++++.+ |++.........||||||||++||||+
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~laral 158 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGMLL 158 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 99999999986 999999753211000 0 00001112234445443 566666677789999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001580 818 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889 (1050)
Q Consensus 818 l~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 889 (1050)
+.+|++|||||||++||+.++..+++.|+++..++|+|++||+++++.. ||+|++|++|++++.|+++++..
T Consensus 159 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 159 MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 9999999999999999999999999999997778999999999999976 99999999999999999998864
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=369.89 Aligned_cols=217 Identities=20% Similarity=0.326 Sum_probs=181.3
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChH---HHhh
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM---DLRK 741 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~---~~r~ 741 (1050)
.|+++||+++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+++
T Consensus 7 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 7 LVDMRGVSFTRGNR--CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred eEEEeCeEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 48999999999643 699999999999999999999999999999999999999999999999998766543 3467
Q ss_pred heEEEcCCcccccc-cHHHhcccC----CCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001580 742 ILGIIPQSPVLFSG-TVRFNLDPF----SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 816 (1050)
Q Consensus 742 ~i~~v~Q~~~lf~~-tv~~nl~~~----~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAra 816 (1050)
.++|+||++.+|.. |+.+|+.+. ......... ..+.+.++. .|+.........+||||||||++||||
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~--~gl~~~~~~~~~~LSgGq~qrv~lara 157 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLH-----STVMMKLEA--VGLRGAAKLMPSELSGGMARRAALARA 157 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHH-----HHHHHHHHH--cCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 89999999999876 999998642 111111111 112223333 244444555567899999999999999
Q ss_pred HccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001580 817 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890 (1050)
Q Consensus 817 ll~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 890 (1050)
|+.+|++|||||||++||+.+++.+.+.|+++.+ ++|||+|||+++++.. ||++++|++|++++.|+++++.+.
T Consensus 158 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (269)
T PRK11831 158 IALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQAN 234 (269)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999998653 7899999999999877 999999999999999999998764
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-41 Score=371.11 Aligned_cols=214 Identities=27% Similarity=0.430 Sum_probs=183.5
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCc---cEEEECCeecCCCChHHHhh
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER---GRILIDGFDIAKFGLMDLRK 741 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~---G~i~~~g~~i~~~~~~~~r~ 741 (1050)
.++++|++++|++...++++|+||+|++||++||+||||||||||+++|+|+++|++ |+|.++|.++...+...+++
T Consensus 5 ~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~ 84 (282)
T PRK13640 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIRE 84 (282)
T ss_pred eEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHh
Confidence 589999999996433369999999999999999999999999999999999999998 89999999998777777888
Q ss_pred heEEEcCCcc--cccccHHHhcccCCC---CCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001580 742 ILGIIPQSPV--LFSGTVRFNLDPFSE---HSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 812 (1050)
Q Consensus 742 ~i~~v~Q~~~--lf~~tv~~nl~~~~~---~~~~----~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~ 812 (1050)
++||+||++. ++..|+.+|+.+... .+.+ ++.++++.++ +.........+||||||||++
T Consensus 85 ~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~-----------L~~~~~~~~~~LS~G~~qrv~ 153 (282)
T PRK13640 85 KVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVG-----------MLDYIDSEPANLSGGQKQRVA 153 (282)
T ss_pred heEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCC-----------ChhHhcCCcccCCHHHHHHHH
Confidence 9999999983 567799999975311 2222 2333444444 444455556789999999999
Q ss_pred HHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhh
Q 001580 813 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 889 (1050)
Q Consensus 813 lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~ 889 (1050)
|||||+.+|++|||||||++||+.++..+.+.|+++.+ ++|||++||+++.+..||++++|++|++++.|+++++..
T Consensus 154 laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 154 IAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998653 789999999999997799999999999999999999865
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=365.39 Aligned_cols=218 Identities=24% Similarity=0.390 Sum_probs=182.3
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhcccc--C---CccEEEECCeecCC--CChH
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE--L---ERGRILIDGFDIAK--FGLM 737 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~--p---~~G~i~~~g~~i~~--~~~~ 737 (1050)
.|+++|+++.|+.. ++|+|+||+|++||++||+||||||||||+++|+|+++ | ++|+|.++|.++.. .+..
T Consensus 12 ~l~i~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYGQH--HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEECCe--eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 48999999999643 69999999999999999999999999999999999997 3 58999999999863 3445
Q ss_pred HHhhheEEEcCCcccccccHHHhcccCCC----CCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001580 738 DLRKILGIIPQSPVLFSGTVRFNLDPFSE----HSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 809 (1050)
Q Consensus 738 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~----~~~~----~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~q 809 (1050)
.+|+.++|+||++.+|..|+++|+.+... ..+. ++.++++..++.+.+ .........+|||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV-------KDRLHTQALSLSGGQQQ 162 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhhhhCCcccCCHHHHH
Confidence 67888999999999998899999964321 1111 122233333332211 23345667789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001580 810 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 888 (1050)
Q Consensus 810 rl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 888 (1050)
|++|||||+.+|+||||||||++||+.++..+.+.|+++.+++|+|+|||+++.+.. ||++++|++|++++.|+++++.
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999998778999999999999876 9999999999999999999987
Q ss_pred hcC
Q 001580 889 SNE 891 (1050)
Q Consensus 889 ~~~ 891 (1050)
.+.
T Consensus 243 ~~~ 245 (259)
T PRK14274 243 SNP 245 (259)
T ss_pred hCC
Confidence 654
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=365.38 Aligned_cols=217 Identities=29% Similarity=0.496 Sum_probs=181.5
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCC----------
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---------- 735 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~---------- 735 (1050)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 478999999964 36999999999999999999999999999999999999999999999999986543
Q ss_pred ---hHHHhhheEEEcCCccccc-ccHHHhcccCC----CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhH
Q 001580 736 ---LMDLRKILGIIPQSPVLFS-GTVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 807 (1050)
Q Consensus 736 ---~~~~r~~i~~v~Q~~~lf~-~tv~~nl~~~~----~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq 807 (1050)
...+|+.++|+||++.+|. .|+.+|+.+.. ........ ..+.++++.+ |++......+..|||||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~ 151 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAE-----KRAMELLDMV--GLADKADHMPAQLSGGQ 151 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhHhhcChhhcCHHH
Confidence 2356788999999998885 59999996421 11111111 1123344442 55555566667899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecCh
Q 001580 808 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 884 (1050)
Q Consensus 808 ~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~ 884 (1050)
|||++|||||+.+|++|||||||++||+.++..+.+.|++..+ +.|+|+|||+++.+.. ||++++|++|++++.|++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~ 231 (252)
T TIGR03005 152 QQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKP 231 (252)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999998653 7899999999999866 999999999999999999
Q ss_pred hHHhhcC
Q 001580 885 EELLSNE 891 (1050)
Q Consensus 885 ~el~~~~ 891 (1050)
+++....
T Consensus 232 ~~~~~~~ 238 (252)
T TIGR03005 232 DEIFRQP 238 (252)
T ss_pred HHHhcCC
Confidence 9987643
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-41 Score=363.34 Aligned_cols=215 Identities=26% Similarity=0.431 Sum_probs=183.9
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHH-HhhheE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRKILG 744 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~-~r~~i~ 744 (1050)
++++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...++.. .|+.++
T Consensus 4 l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (241)
T PRK10895 4 LTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81 (241)
T ss_pred EEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence 889999999964 36999999999999999999999999999999999999999999999999998777644 567899
Q ss_pred EEcCCcccccc-cHHHhcccCCCC----CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHcc
Q 001580 745 IIPQSPVLFSG-TVRFNLDPFSEH----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 819 (1050)
Q Consensus 745 ~v~Q~~~lf~~-tv~~nl~~~~~~----~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~ 819 (1050)
|+||++.+|.. |+++|+.+.... ...+. ...+.++++.+ |++.........||||||||++||||++.
T Consensus 82 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~ 154 (241)
T PRK10895 82 YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQR-----EDRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARALAA 154 (241)
T ss_pred EeccCCcccccCcHHHHHhhhhhcccccCHHHH-----HHHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHHhc
Confidence 99999988875 999999753211 11111 12234455554 56666667778899999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001580 820 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889 (1050)
Q Consensus 820 ~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 889 (1050)
+|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 155 NPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 999999999999999999999999998865 47899999999988866 99999999999999999999864
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=365.45 Aligned_cols=224 Identities=22% Similarity=0.369 Sum_probs=198.7
Q ss_pred EEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE------------EeCcEE
Q 001580 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 109 (1050)
Q Consensus 42 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 109 (1050)
|+++|++|.|+. +.+++|+|+||+|++||+++|+|+||||||||+++|+|+++ ++|.+.. +++.|+
T Consensus 3 i~~~nls~~~~~-~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (275)
T cd03289 3 MTVKDLTAKYTE-GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFG 80 (275)
T ss_pred EEEEEEEEEeCC-CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEE
Confidence 789999999973 23579999999999999999999999999999999999997 5665432 123599
Q ss_pred EEecCCCCCcccHHHHhccCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEE
Q 001580 110 YVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 189 (1050)
Q Consensus 110 ~v~Q~~~l~~~TV~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vl 189 (1050)
||||+|.+|+.||++|+........+++...++.+++...++.+|+++++.++++|.+||||||||++|||||+.+|+|+
T Consensus 81 ~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~il 160 (275)
T cd03289 81 VIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKIL 160 (275)
T ss_pred EECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999643334556777788899999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhhcCEEEEEcCCeEeeccChhhhhcChHHHHHHHHHhh
Q 001580 190 IFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAG 268 (1050)
Q Consensus 190 lLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~ 268 (1050)
||||||++||+.+.+.+.+.+... ..++|+|+|||+++++..||||++|++|++++.|+++++......|+.++...+
T Consensus 161 llDEpts~LD~~~~~~l~~~l~~~-~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 238 (275)
T cd03289 161 LLDEPSAHLDPITYQVIRKTLKQA-FADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPSD 238 (275)
T ss_pred EEECccccCCHHHHHHHHHHHHHh-cCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhhcc
Confidence 999999999999999999877754 358999999999999988999999999999999999999988788888876654
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=358.96 Aligned_cols=206 Identities=22% Similarity=0.377 Sum_probs=171.6
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
|+++|++++|++. ++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 i~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~--~~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGNV--TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPP--KDRDIAM 76 (213)
T ss_pred CEEEeeEEEECCe--eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--ccceEEE
Confidence 4689999999653 69999999999999999999999999999999999999999999999999876554 2467999
Q ss_pred EcCCccccc-ccHHHhcccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 001580 746 IPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 821 (1050)
Q Consensus 746 v~Q~~~lf~-~tv~~nl~~~~---~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p 821 (1050)
+||++.+|. .|+++|+.+.. .....+..+ .+.++++. .|++........+||||||||++|||||+.+|
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~--~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 149 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDE-----RVREVAEL--LQIEHLLDRKPKQLSGGQRQRVALGRAIVREP 149 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHH--cCCHHHHhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999999885 59999996531 111111111 12223333 24445555566789999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001580 822 KILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 882 (1050)
Q Consensus 822 ~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 882 (1050)
++|||||||++||+.+++.+.+.|+++. .++|+|++||+++++.. ||+|++|++|++++.|
T Consensus 150 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 150 KVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999865 37899999999999877 9999999999999875
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=362.47 Aligned_cols=216 Identities=26% Similarity=0.445 Sum_probs=183.1
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCC--hHHHhhhe
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG--LMDLRKIL 743 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~--~~~~r~~i 743 (1050)
++++|++++|++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.+
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 2 IEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred EEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 789999999964 36999999999999999999999999999999999999999999999999987643 34567889
Q ss_pred EEEcCCccccc-ccHHHhcccCC----CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHc
Q 001580 744 GIIPQSPVLFS-GTVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 818 (1050)
Q Consensus 744 ~~v~Q~~~lf~-~tv~~nl~~~~----~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall 818 (1050)
+|+||++.+|. .|+++|+.+.. .....+.. ..+.++++. .|++.........||||||||++||||++
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~--~gl~~~~~~~~~~LS~G~~qrv~la~al~ 152 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAE-----KQARELLAK--VGLAERAHHYPSELSGGQQQRVAIARALA 152 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHH-----HHHHHHHHH--cCChHHHhcChhhcCHHHHHHHHHHHHHh
Confidence 99999998886 59999996531 11111111 112344444 36666666777889999999999999999
Q ss_pred cCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001580 819 RRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890 (1050)
Q Consensus 819 ~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 890 (1050)
.+|++|||||||++||+.++..+.+.|+++. .++|+|++||+++++.. ||++++|++|++++.|+++++...
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 153 VKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 9999999999999999999999999998865 47999999999999976 999999999999999999998754
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-41 Score=369.23 Aligned_cols=219 Identities=27% Similarity=0.470 Sum_probs=183.6
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheE
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 744 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 744 (1050)
.++++|++++|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 48999999999633347999999999999999999999999999999999999999999999999998777777888999
Q ss_pred EEcCCcc--cccccHHHhcccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHcc
Q 001580 745 IIPQSPV--LFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 819 (1050)
Q Consensus 745 ~v~Q~~~--lf~~tv~~nl~~~~---~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~ 819 (1050)
|+||++. ++..|+++|+.+.. .....+..+ .+.++++. .|++........+||||||||++|||||+.
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~--~~l~~~~~~~~~~LS~G~~qrl~laral~~ 159 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKD-----IIDDLAKK--VGMEDYLDKEPQNLSGGQKQRVAIASVLAL 159 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHH--cCCHHHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 9999983 45679999997531 122222111 12223333 244445555667899999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001580 820 RSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 890 (1050)
Q Consensus 820 ~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 890 (1050)
+|++|||||||++||+.+.+.+++.|+++.+ ++|+|++||+++.+..||++++|++|++++.|+++++...
T Consensus 160 ~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 160 NPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999998653 4899999999999877999999999999999999988653
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=353.25 Aligned_cols=199 Identities=28% Similarity=0.423 Sum_probs=180.0
Q ss_pred EEEEEEEEEeCCCC---CCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhh
Q 001580 666 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 742 (1050)
Q Consensus 666 i~~~~v~~~y~~~~---~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~ 742 (1050)
++++||+++|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 47899999997532 3699999999999999999999999999999999999999999999998 6
Q ss_pred eEEEcCCcccccccHHHhcccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 001580 743 LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 822 (1050)
Q Consensus 743 i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~ 822 (1050)
|+|+||+|.+|+.|+++|+.+.....++...++++.+++.+++..+|.|+++.++....+||||||||++|||||+.+|+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ 147 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDAD 147 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998754445556777788888999999999999999999999999999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHH-HHHHHc-CCcEEEEeecCchhhhhcCEEEEEeCCE
Q 001580 823 ILVLDEATAAVDVRTDALIQK-TIREEF-KSCTMLIIAHRLNTIIDCDRILLLDSGR 877 (1050)
Q Consensus 823 illLDEpts~LD~~~~~~i~~-~l~~~~-~~~tvi~vtH~~~~~~~~d~i~vl~~G~ 877 (1050)
++||||||++||+.+.+.+.+ .++... .+.|||++||+++.+..||++++|++|+
T Consensus 148 llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999999988887 456553 4689999999999988899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=362.31 Aligned_cols=217 Identities=27% Similarity=0.458 Sum_probs=182.4
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCC--------hH
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG--------LM 737 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~--------~~ 737 (1050)
++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ..
T Consensus 4 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 4 IEVKNLVKKFHGQ--TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred EEEeceEEEECCe--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 8999999999643 6999999999999999999999999999999999999999999999999986532 24
Q ss_pred HHhhheEEEcCCccccc-ccHHHhcccC----CCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001580 738 DLRKILGIIPQSPVLFS-GTVRFNLDPF----SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 812 (1050)
Q Consensus 738 ~~r~~i~~v~Q~~~lf~-~tv~~nl~~~----~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~ 812 (1050)
.+|+.++|+||++.+|. .|+++|+.+. ......+.. ..+.+.++.+ |+.........+||||||||++
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~Gq~qrv~ 154 (250)
T PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEAT-----ARARELLAKV--GLAGKETSYPRRLSGGQQQRVA 154 (250)
T ss_pred HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCcchhhCChhhCChHHHHHHH
Confidence 56788999999998886 5999999642 111111111 1123344443 5555556677899999999999
Q ss_pred HHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001580 813 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890 (1050)
Q Consensus 813 lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 890 (1050)
|||||+.+|+||||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 155 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 234 (250)
T PRK11264 155 IARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFAD 234 (250)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999998865 47899999999999976 999999999999999999998754
Q ss_pred C
Q 001580 891 E 891 (1050)
Q Consensus 891 ~ 891 (1050)
.
T Consensus 235 ~ 235 (250)
T PRK11264 235 P 235 (250)
T ss_pred C
Confidence 3
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=358.14 Aligned_cols=204 Identities=28% Similarity=0.483 Sum_probs=169.5
Q ss_pred EEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEEE
Q 001580 667 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 746 (1050)
Q Consensus 667 ~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v 746 (1050)
+++|++++|++...++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 36799999965223699999999999999999999999999999999999999999999999999877777788899999
Q ss_pred cCCcc--cccccHHHhcccCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 001580 747 PQSPV--LFSGTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 821 (1050)
Q Consensus 747 ~Q~~~--lf~~tv~~nl~~~~~---~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p 821 (1050)
||++. ++..|+++|+.+... ....+..+ .+.++++. .|++.........||||||||++|||||+.+|
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~--~~l~~~~~~~~~~LSgG~~qrv~laral~~~p 153 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEE-----RVEEALEL--VGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDP 153 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHH--cCcHhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 99984 567799999965311 11111111 12233333 24444455566789999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHHcC-CcEEEEeecCchhhhh-cCEEEEEeCCE
Q 001580 822 KILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGR 877 (1050)
Q Consensus 822 ~illLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~ 877 (1050)
++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++++.. ||+|++|++|+
T Consensus 154 ~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 154 DILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999998754 7899999999999988 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-41 Score=345.67 Aligned_cols=178 Identities=33% Similarity=0.574 Sum_probs=163.9
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
++++|++++|+...+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+|+.++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 478999999965323699999999999999999999999999999999999999999999999988665 5567888999
Q ss_pred EcCCcccccccHHHhcccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCEEE
Q 001580 746 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 825 (1050)
Q Consensus 746 v~Q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~ill 825 (1050)
+||++.+|+.|+++|+ ..+||||||||++||||++++|++||
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999988999886 35799999999999999999999999
Q ss_pred EeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEec
Q 001580 826 LDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYD 882 (1050)
Q Consensus 826 LDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g 882 (1050)
|||||++||+.+++.+++.|++..+++|+|++||+++++..||++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999876789999999999999889999999999998754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=364.02 Aligned_cols=211 Identities=28% Similarity=0.439 Sum_probs=181.3
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
++++|++++|++. ++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 3 l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 3 LEARNLSVRLGGR--TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred EEEEeEEEEeCCe--eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 7899999999643 69999999999999999999999999999999999999999999999999988777777888999
Q ss_pred EcCCccc-ccccHHHhcccCCC-C--C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHH
Q 001580 746 IPQSPVL-FSGTVRFNLDPFSE-H--S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 817 (1050)
Q Consensus 746 v~Q~~~l-f~~tv~~nl~~~~~-~--~----~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAral 817 (1050)
+||++.+ +..|+++|+.+... . . +..+.++++.. |++........+||||||||++|||||
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGe~qrv~la~al 149 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQV-----------DLAHLAGRDYPQLSGGEQQRVQLARVL 149 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHc-----------CCHhHhcCCcccCCHHHHHHHHHHHHH
Confidence 9999987 56699999865321 1 1 11233333333 444445556678999999999999999
Q ss_pred c------cCCCEEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001580 818 L------RRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 888 (1050)
Q Consensus 818 l------~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 888 (1050)
+ .+|++|||||||++||+.+...+.+.|+++. .++|||++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 150 ~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 150 AQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred hcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence 9 5999999999999999999999999999865 47899999999999876 9999999999999999999886
Q ss_pred h
Q 001580 889 S 889 (1050)
Q Consensus 889 ~ 889 (1050)
.
T Consensus 230 ~ 230 (258)
T PRK13548 230 T 230 (258)
T ss_pred C
Confidence 4
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=365.90 Aligned_cols=211 Identities=26% Similarity=0.444 Sum_probs=182.0
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 3 LRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 789999999964 369999999999999999999999999999999999999999999999999887777778888999
Q ss_pred EcCCcccccc-cHHHhcccCCC--------CC---HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001580 746 IPQSPVLFSG-TVRFNLDPFSE--------HS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 813 (1050)
Q Consensus 746 v~Q~~~lf~~-tv~~nl~~~~~--------~~---~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~l 813 (1050)
+||++.++.. |+.+|+.+... .. +..+.++++.. |++.........||||||||++|
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~l 149 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQT-----------RINHLADRRLTDLSGGQRQRAFL 149 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHc-----------CCHHHHcCCcccCCHHHHHHHHH
Confidence 9999988866 99999975311 01 11233333333 44444455667899999999999
Q ss_pred HHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001580 814 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889 (1050)
Q Consensus 814 Arall~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 889 (1050)
|||++.+|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||++++|++|+++..|+++++..
T Consensus 150 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 150 AMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 999999999999999999999999999999998865 47899999999999876 99999999999999999988864
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=346.71 Aligned_cols=203 Identities=27% Similarity=0.436 Sum_probs=174.2
Q ss_pred cEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE------------EeCcE
Q 001580 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 108 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 108 (1050)
+|+++|+||.|. ++.+++|+||+|++||+++++|||||||||+||+|.++++|++|.+.. +|.+|
T Consensus 1 MI~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~I 77 (309)
T COG1125 1 MIEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKI 77 (309)
T ss_pred CceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhh
Confidence 489999999997 468999999999999999999999999999999999999999987653 35579
Q ss_pred EEEecCCCCC-cccHHHHhccCCC---CCHH----HHHHHHHHhCcHH--HHhcCCCCCcccccCCCCCCCHHHHHHHHH
Q 001580 109 AYVPQVSWIF-NATVRDNILFGSA---FEPA----RYEKAIDVTSLQH--DLDLLPGGDVTEIGERGVNISGGQKQRVSM 178 (1050)
Q Consensus 109 ~~v~Q~~~l~-~~TV~eni~~g~~---~~~~----~~~~~~~~~~l~~--~~~~~~~g~~t~vg~~g~~LSGGqrqRv~L 178 (1050)
|||-|..-|| ..||.|||.+-.. ++++ +..+.++..+|.. ..+..| ++|||||+|||.+
T Consensus 78 GYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv 146 (309)
T COG1125 78 GYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGV 146 (309)
T ss_pred hhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHH
Confidence 9999999887 7899999986422 2333 3344555666643 344454 6999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhhhcC
Q 001580 179 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 256 (1050)
Q Consensus 179 AraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 256 (1050)
||||+.+|+|+|+||||++|||-++..+.+.+++..+ -|+|+|+||||++++-. +|||++|++|+++..+++++++.+
T Consensus 147 ~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~ 226 (309)
T COG1125 147 ARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226 (309)
T ss_pred HHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC
Confidence 9999999999999999999999999999998877654 49999999999998654 799999999999999999999877
Q ss_pred h
Q 001580 257 G 257 (1050)
Q Consensus 257 ~ 257 (1050)
+
T Consensus 227 P 227 (309)
T COG1125 227 P 227 (309)
T ss_pred c
Confidence 4
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=359.99 Aligned_cols=208 Identities=24% Similarity=0.346 Sum_probs=171.1
Q ss_pred EEEEEEEEEeCCCC--CCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhhe
Q 001580 666 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 743 (1050)
Q Consensus 666 i~~~~v~~~y~~~~--~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i 743 (1050)
++++|++++|++.. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 46899999996411 369999999999999999999999999999999999999999999999998863 45789
Q ss_pred EEEcCCccccc-ccHHHhcccCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHcc
Q 001580 744 GIIPQSPVLFS-GTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 819 (1050)
Q Consensus 744 ~~v~Q~~~lf~-~tv~~nl~~~~~---~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~ 819 (1050)
+|+||++.+|. .|+++|+.+... ....... ..+.++++.+ |++........+||||||||++|||||+.
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~ 148 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEAR-----ERAEELLELV--GLSGFENAYPHQLSGGMRQRVALARALAV 148 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 99999999887 599999864211 1111110 1122333332 44444555567899999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEe--CCEEEEecChh
Q 001580 820 RSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLD--SGRVLEYDTPE 885 (1050)
Q Consensus 820 ~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~--~G~i~~~g~~~ 885 (1050)
+|++|||||||++||+.++..+++.|+++. .++|+|+|||+++++.. ||++++|+ +|++++.++.+
T Consensus 149 ~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 149 DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 999999999999999999999999999864 37899999999998866 99999999 79999987754
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=362.53 Aligned_cols=218 Identities=28% Similarity=0.435 Sum_probs=182.1
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccC-----CccEEEECCeecCC--CChH
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FGLM 737 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p-----~~G~i~~~g~~i~~--~~~~ 737 (1050)
.++++||++.|++. ++++|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++.. .+..
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14240 3 KISVKDLDLFYGDF--QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVN 80 (250)
T ss_pred eEEEEEEEEEECCc--eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH
Confidence 58999999999643 699999999999999999999999999999999999863 69999999999864 3445
Q ss_pred HHhhheEEEcCCcccccccHHHhcccCCC---C-C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001580 738 DLRKILGIIPQSPVLFSGTVRFNLDPFSE---H-S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 809 (1050)
Q Consensus 738 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~---~-~----~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~q 809 (1050)
.+|+.++|+||++.+|..|+++|+.+... . . ++.+.++++.+++.+ ++.......+.+|||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~q 153 (250)
T PRK14240 81 QLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWD-------EVKDRLKKSALGLSGGQQQ 153 (250)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCch-------hhHHHHhcCCCCCCHHHHH
Confidence 67888999999999888999999975311 1 1 122333333333221 1223345667789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001580 810 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 888 (1050)
Q Consensus 810 rl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 888 (1050)
|++|||||+.+|++|||||||++||+.++..+.+.|+++.+++|+|+|||+++.+.. ||++++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 154 RLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988668899999999998876 9999999999999999999987
Q ss_pred hcC
Q 001580 889 SNE 891 (1050)
Q Consensus 889 ~~~ 891 (1050)
...
T Consensus 234 ~~~ 236 (250)
T PRK14240 234 TNP 236 (250)
T ss_pred hCC
Confidence 543
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=360.16 Aligned_cols=217 Identities=28% Similarity=0.411 Sum_probs=180.1
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHH-Hhhhe
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRKIL 743 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~-~r~~i 743 (1050)
.++++|++++|+. .++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 5 MLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred EEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 3899999999964 36999999999999999999999999999999999999999999999999998877654 57789
Q ss_pred EEEcCCcccccc-cHHHhcccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 001580 744 GIIPQSPVLFSG-TVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 821 (1050)
Q Consensus 744 ~~v~Q~~~lf~~-tv~~nl~~~~~-~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p 821 (1050)
+|+||++.+|.. |+++|+.+... ....+..+. +.+.++.++ ++..........||||||||++||||++.+|
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 156 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQER-----IKWVYELFP-RLHERRIQRAGTMSGGEQQMLAIGRALMSQP 156 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHH-----HHHHHHHHH-HHHHHHhCchhhCCHHHHHHHHHHHHHHhCC
Confidence 999999998875 99999975321 111111111 122222221 1222334456789999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001580 822 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889 (1050)
Q Consensus 822 ~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 889 (1050)
+||||||||++||+.+.+.+.+.|+++. +++|+|++||+++++.. ||++++|++|++++.|+++++..
T Consensus 157 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 157 RLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 9999999999999999999999999865 47999999999998766 99999999999999999999864
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=367.19 Aligned_cols=213 Identities=23% Similarity=0.380 Sum_probs=183.1
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhhe
Q 001580 664 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 743 (1050)
Q Consensus 664 ~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i 743 (1050)
..|+++||+++|++. .+|+|+||+|.+||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 6 ~~l~i~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 6 ARLRGEQLTLGYGKY--TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred cEEEEEEEEEEECCE--EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 359999999999743 699999999999999999999999999999999999999999999999999887777788899
Q ss_pred EEEcCCccccc-ccHHHhcccCC-C-------CCH---HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 001580 744 GIIPQSPVLFS-GTVRFNLDPFS-E-------HSD---ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 811 (1050)
Q Consensus 744 ~~v~Q~~~lf~-~tv~~nl~~~~-~-------~~~---~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl 811 (1050)
+|+||++.+|. .|+++|+.+.. . ..+ +.+.++++.. |++........+||||||||+
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~Gq~qrv 152 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQAT-----------GITHLADQSVDTLSGGQRQRA 152 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHc-----------CCHHHhcCCcccCChHHHHHH
Confidence 99999998875 59999986531 1 011 1233333333 444445556678999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001580 812 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 888 (1050)
Q Consensus 812 ~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 888 (1050)
+||||++.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999998753 7899999999999876 9999999999999999998876
Q ss_pred h
Q 001580 889 S 889 (1050)
Q Consensus 889 ~ 889 (1050)
.
T Consensus 233 ~ 233 (265)
T PRK10253 233 T 233 (265)
T ss_pred h
Confidence 4
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=363.72 Aligned_cols=218 Identities=28% Similarity=0.417 Sum_probs=181.5
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhcc---ccC--CccEEEECCeecCCC--ChH
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI---VEL--ERGRILIDGFDIAKF--GLM 737 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~---~~p--~~G~i~~~g~~i~~~--~~~ 737 (1050)
.++++|+++.|++. ++|+|+||+|++||++||+||||||||||+++|+|+ ++| ++|+|.++|.++... +..
T Consensus 3 ~l~~~~~~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 3 KIDARDVNFWYGDF--HALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred EEEEEEEEEEECCE--eEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 48999999999653 699999999999999999999999999999999997 454 589999999998754 235
Q ss_pred HHhhheEEEcCCcccccccHHHhcccCC---CC-CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001580 738 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 809 (1050)
Q Consensus 738 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~-~~----~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~q 809 (1050)
.+|+.++|+||++.+|..|+.+|+.+.. .. .. ..+.++++.+++.+. +.+.....+.+|||||||
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~G~~q 153 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDE-------VKDKLKESAFALSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcc-------hhhhhhCCcccCCHHHHH
Confidence 6788899999999999889999996421 11 11 122333333332211 123455667889999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001580 810 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 888 (1050)
Q Consensus 810 rl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 888 (1050)
|++|||||+.+|++|||||||++||+.++..+.+.|+++.+++|||+|||+++.+.. ||++++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999998778999999999999866 9999999999999999999997
Q ss_pred hcC
Q 001580 889 SNE 891 (1050)
Q Consensus 889 ~~~ 891 (1050)
++.
T Consensus 234 ~~~ 236 (250)
T PRK14245 234 TNP 236 (250)
T ss_pred cCC
Confidence 654
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=369.94 Aligned_cols=217 Identities=26% Similarity=0.457 Sum_probs=181.0
Q ss_pred EEEEEEEEEeCCCC---CCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCC----ChHH
Q 001580 666 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF----GLMD 738 (1050)
Q Consensus 666 i~~~~v~~~y~~~~---~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~----~~~~ 738 (1050)
|+++|++++|++.. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... +...
T Consensus 3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13641 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82 (287)
T ss_pred EEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996321 3699999999999999999999999999999999999999999999999998653 2345
Q ss_pred HhhheEEEcCCc--ccccccHHHhcccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHH
Q 001580 739 LRKILGIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLS 812 (1050)
Q Consensus 739 ~r~~i~~v~Q~~--~lf~~tv~~nl~~~~---~~~~~~~~~~l~~~~~~~~i~~~p~gl~-t~v~~~~~~LSgGq~qrl~ 812 (1050)
.++.++|+||++ .+|..|+.+|+.+.. .....+..+ .+.++++. .|++ ........+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~--~gL~~~~~~~~~~~LSgGq~qrl~ 155 (287)
T PRK13641 83 LRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKE-----KALKWLKK--VGLSEDLISKSPFELSGGQMRRVA 155 (287)
T ss_pred HHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHH--cCCChhHhhCCcccCCHHHHHHHH
Confidence 677899999998 477789999996421 112221111 12334444 2554 3456667889999999999
Q ss_pred HHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001580 813 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889 (1050)
Q Consensus 813 lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 889 (1050)
|||||+.+|++|||||||++||+.+...+.+.|+++. .+.|||++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 156 laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 156 IAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999999875 47899999999999876 99999999999999999999865
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-41 Score=358.61 Aligned_cols=207 Identities=27% Similarity=0.420 Sum_probs=172.2
Q ss_pred EEEEEEEEEeCCCC--CCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHH---Hh
Q 001580 666 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LR 740 (1050)
Q Consensus 666 i~~~~v~~~y~~~~--~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~---~r 740 (1050)
++++||+++|++.. .++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996421 36999999999999999999999999999999999999999999999999998776544 33
Q ss_pred -hheEEEcCCccccc-ccHHHhcccC---CCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001580 741 -KILGIIPQSPVLFS-GTVRFNLDPF---SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 815 (1050)
Q Consensus 741 -~~i~~v~Q~~~lf~-~tv~~nl~~~---~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAr 815 (1050)
+.++|+||++.+|. .|+++|+.+. ......+.. ..+.++++. .|++.........||||||||++|||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~--~~l~~~~~~~~~~LS~G~~qrv~lar 154 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAK-----ERAYEMLEK--VGLEHRINHRPSELSGGERQRVAIAR 154 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHH--cCChhhhhCChhhCCHHHHHHHHHHH
Confidence 67999999999886 4999999642 111111111 112234443 35555556666789999999999999
Q ss_pred HHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhhcCEEEEEeCCEEE
Q 001580 816 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVL 879 (1050)
Q Consensus 816 all~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~ 879 (1050)
||+.+|+||||||||++||+.++..+.+.|+++. .++|+|++||+++++..||+|++|++|+++
T Consensus 155 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 155 ALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 9999999999999999999999999999999875 378999999999999889999999999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=363.99 Aligned_cols=218 Identities=28% Similarity=0.415 Sum_probs=181.9
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccC-----CccEEEECCeecCCCC--hH
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKFG--LM 737 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p-----~~G~i~~~g~~i~~~~--~~ 737 (1050)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++...+ ..
T Consensus 12 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 12 QIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred eEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 4999999999964 3699999999999999999999999999999999999985 7999999999986432 34
Q ss_pred HHhhheEEEcCCcccccccHHHhcccCC---CCCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001580 738 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 810 (1050)
Q Consensus 738 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~~~~----~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qr 810 (1050)
.+|+.++|+||++.+|..|+++|+.+.. ..... .+.++++.+++.+ .+..........||||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LSgG~~qr 162 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWD-------ETSDRLKSPALSLSGGQQQR 162 (258)
T ss_pred HHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc-------chhhhhcCChhhCCHHHHHH
Confidence 5678899999999988899999997431 11221 2233333333211 11233455667899999999
Q ss_pred HHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001580 811 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889 (1050)
Q Consensus 811 l~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 889 (1050)
++|||||+.+|+||||||||++||+.++..+.+.|+++.+++|+|+|||+++++.. ||+|++|++|++++.|+++++..
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 242 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFH 242 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999987668999999999999876 99999999999999999999976
Q ss_pred cC
Q 001580 890 NE 891 (1050)
Q Consensus 890 ~~ 891 (1050)
.+
T Consensus 243 ~~ 244 (258)
T PRK14268 243 NP 244 (258)
T ss_pred CC
Confidence 54
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=363.37 Aligned_cols=218 Identities=26% Similarity=0.387 Sum_probs=181.6
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCC---------
Q 001580 664 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF--------- 734 (1050)
Q Consensus 664 ~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~--------- 734 (1050)
+.++++||++.|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (257)
T PRK10619 4 NKLNVIDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKV 81 (257)
T ss_pred ccEEEeeeEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccc
Confidence 459999999999643 699999999999999999999999999999999999999999999999988542
Q ss_pred ----ChHHHhhheEEEcCCcccccc-cHHHhcccCC----CCCHHHHHHHHHHhcHHHHHHHccCCcchhh-hcCCCCCC
Q 001580 735 ----GLMDLRKILGIIPQSPVLFSG-TVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQV-SEAGENFS 804 (1050)
Q Consensus 735 ----~~~~~r~~i~~v~Q~~~lf~~-tv~~nl~~~~----~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v-~~~~~~LS 804 (1050)
....+++.++|+||++.+|.. |+++|+.+.. .....+.. ..+.++++.+ |+.... ......||
T Consensus 82 ~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~LS 154 (257)
T PRK10619 82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEAR-----ERAVKYLAKV--GIDERAQGKYPVHLS 154 (257)
T ss_pred ccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHc--CCChhhhhCCcccCC
Confidence 123567889999999999875 9999986421 11111111 1122334432 444433 55667899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001580 805 VGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 882 (1050)
Q Consensus 805 gGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 882 (1050)
||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++++.. ||||++|++|++++.|
T Consensus 155 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~ 234 (257)
T PRK10619 155 GGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 234 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999875 47999999999999987 9999999999999999
Q ss_pred ChhHHhhc
Q 001580 883 TPEELLSN 890 (1050)
Q Consensus 883 ~~~el~~~ 890 (1050)
+++++...
T Consensus 235 ~~~~~~~~ 242 (257)
T PRK10619 235 APEQLFGN 242 (257)
T ss_pred CHHHhhhC
Confidence 99998754
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=363.12 Aligned_cols=218 Identities=24% Similarity=0.397 Sum_probs=181.4
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccc--cC---CccEEEECCeecCCC--ChH
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV--EL---ERGRILIDGFDIAKF--GLM 737 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~--~p---~~G~i~~~g~~i~~~--~~~ 737 (1050)
.++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|++ .| ++|+|.++|.++... +..
T Consensus 5 ~l~~~~l~~~~~~~--~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 5 ILQVSDLSVYYNKK--KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred eEEEEeeEEEECCe--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 38999999999643 6999999999999999999999999999999999995 46 499999999998643 334
Q ss_pred HHhhheEEEcCCcccccccHHHhcccCC---CC-CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001580 738 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 809 (1050)
Q Consensus 738 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~-~~----~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~q 809 (1050)
.+|+.++|+||++.+|..|+++|+.+.. .. .. +++.++++..++.. ++.+..+....+|||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G~~q 155 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWD-------EVKDRLHDSALGLSGGQQQ 155 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCch-------hHHHHHhcCcccCCHHHHH
Confidence 5788899999999999899999986421 11 11 12223333333221 1223456667889999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001580 810 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 888 (1050)
Q Consensus 810 rl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 888 (1050)
|++|||||+.+|++|||||||++||+.++..+.+.|++..+++|+|++||+++++.. ||+|++|++|++++.|+++++.
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667999999999999866 9999999999999999999987
Q ss_pred hcC
Q 001580 889 SNE 891 (1050)
Q Consensus 889 ~~~ 891 (1050)
+.+
T Consensus 236 ~~~ 238 (252)
T PRK14239 236 MNP 238 (252)
T ss_pred hCC
Confidence 654
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-41 Score=375.38 Aligned_cols=207 Identities=26% Similarity=0.449 Sum_probs=173.6
Q ss_pred EeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEEEcCCcccc
Q 001580 674 RYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF 753 (1050)
Q Consensus 674 ~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf 753 (1050)
+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .+..+|+++||+||++.+|
T Consensus 2 ~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 2 VYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred eeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCC
Confidence 5643 369999999999999999999999999999999999999999999999999876 4456788999999999988
Q ss_pred cc-cHHHhcccCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEecc
Q 001580 754 SG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEA 829 (1050)
Q Consensus 754 ~~-tv~~nl~~~~~---~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~illLDEp 829 (1050)
.. |+++|+.+... ....+.. ..+.++++.+ |+.........+||||||||++|||||+++|++||||||
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 151 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAE-----ERAEELLELF--ELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEP 151 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 76 99999975321 1111111 1122334432 444445556678999999999999999999999999999
Q ss_pred CcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001580 830 TAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890 (1050)
Q Consensus 830 ts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 890 (1050)
|+|||+.+++.+++.|+++. .++|||++||+++++.. ||+|++|++|++++.|+++++.+.
T Consensus 152 t~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 152 TTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 99999999999999999875 47899999999999987 999999999999999999998764
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=365.21 Aligned_cols=218 Identities=25% Similarity=0.456 Sum_probs=181.4
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhcccc-----CCccEEEECCeecCCC--ChH
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAKF--GLM 737 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~-----p~~G~i~~~g~~i~~~--~~~ 737 (1050)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++... +..
T Consensus 21 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 21 ILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred eEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 4899999999964 369999999999999999999999999999999999865 7899999999998643 334
Q ss_pred HHhhheEEEcCCcccccccHHHhcccCC---CC-CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001580 738 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 809 (1050)
Q Consensus 738 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~-~~----~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~q 809 (1050)
.+++.++|+||++.+|..|+.+|+.+.. .. .. +.+.++++..++.. ++....+..+.+|||||||
T Consensus 99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LSgGq~q 171 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWD-------EVKDRLHSSALSLSGGQQQ 171 (268)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCc-------chHHHHhcCcccCCHHHHH
Confidence 5678899999999999889999987421 11 11 12223333332211 1123445667889999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001580 810 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 888 (1050)
Q Consensus 810 rl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 888 (1050)
|++|||||+.+|++|||||||++||+.++..+.+.|+++.+++|||++||+++++.. ||+|++|++|++++.|+++++.
T Consensus 172 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998667899999999999876 9999999999999999999987
Q ss_pred hcC
Q 001580 889 SNE 891 (1050)
Q Consensus 889 ~~~ 891 (1050)
.+.
T Consensus 252 ~~~ 254 (268)
T PRK14248 252 TSP 254 (268)
T ss_pred hCC
Confidence 653
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=361.45 Aligned_cols=215 Identities=25% Similarity=0.364 Sum_probs=180.6
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCC------CChHHH
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK------FGLMDL 739 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~------~~~~~~ 739 (1050)
++++|+++.|++. ++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .....+
T Consensus 3 l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 3 IQLNGINCFYGAH--QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEeeEEEECCe--eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 7899999999643 69999999999999999999999999999999999999999999999998731 123456
Q ss_pred hhheEEEcCCcccccc-cHHHhcccCC----CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001580 740 RKILGIIPQSPVLFSG-TVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 814 (1050)
Q Consensus 740 r~~i~~v~Q~~~lf~~-tv~~nl~~~~----~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lA 814 (1050)
|+.++|+||++.+|.. |+.+|+.... .....+.. ..+.++++.+ |++........+||||||||++||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la 153 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQAL-----ARAEKLLERL--RLKPYADRFPLHLSGGQQQRVAIA 153 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHH
Confidence 7889999999998875 9999986311 11111111 1233444443 566666666788999999999999
Q ss_pred HHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001580 815 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889 (1050)
Q Consensus 815 rall~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 889 (1050)
||++.+|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 154 ral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 230 (242)
T PRK11124 154 RALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQ 230 (242)
T ss_pred HHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcC
Confidence 99999999999999999999999999999999875 47999999999999976 99999999999999999988754
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=373.24 Aligned_cols=223 Identities=25% Similarity=0.383 Sum_probs=183.4
Q ss_pred cEEEEEEEEEeCCC--------CCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCCh
Q 001580 665 SIKFEDVVLRYRPE--------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL 736 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~--------~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~ 736 (1050)
.|+++|+++.|+.. ...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 38999999999621 2369999999999999999999999999999999999999999999999999988765
Q ss_pred H---HHhhheEEEcCCcc--cccc-cHHHhccc----CCCCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCC
Q 001580 737 M---DLRKILGIIPQSPV--LFSG-TVRFNLDP----FSEHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 802 (1050)
Q Consensus 737 ~---~~r~~i~~v~Q~~~--lf~~-tv~~nl~~----~~~~~~----~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~ 802 (1050)
. .+|++|+||||+|. ++.. |+.+|+.. ...... +++.++++.+++.+ ......+..
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP----------EHYDRYPHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh----------HHhcCCCcc
Confidence 4 45778999999983 5543 88887742 111111 22333333333321 233455678
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEE
Q 001580 803 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVL 879 (1050)
Q Consensus 803 LSgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~ 879 (1050)
||||||||++|||||+.+|+|||+||||++||+.++..+.+.|+++.+ +.|+|+||||++.+.. ||+|++|++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998653 7899999999999986 9999999999999
Q ss_pred EecChhHHhhcCCChHHH
Q 001580 880 EYDTPEELLSNEGSSFSK 897 (1050)
Q Consensus 880 ~~g~~~el~~~~~~~~~~ 897 (1050)
+.|+.+++.++....|.+
T Consensus 235 e~g~~~~~~~~p~hpyt~ 252 (327)
T PRK11308 235 EKGTKEQIFNNPRHPYTQ 252 (327)
T ss_pred EECCHHHHhcCCCCHHHH
Confidence 999999998765545554
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-41 Score=360.74 Aligned_cols=211 Identities=28% Similarity=0.422 Sum_probs=178.2
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHH-HhhheE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRKILG 744 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~-~r~~i~ 744 (1050)
|+++||++.|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .++.++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQS--HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCCe--EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 4689999999743 6999999999999999999999999999999999999999999999999998776654 466799
Q ss_pred EEcCCcccccc-cHHHhcccCCC-C--CHH-HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHcc
Q 001580 745 IIPQSPVLFSG-TVRFNLDPFSE-H--SDA-DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 819 (1050)
Q Consensus 745 ~v~Q~~~lf~~-tv~~nl~~~~~-~--~~~-~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~ 819 (1050)
|+||++.+|.. |+++|+.+... . ... ...++++.. .++.........+||||||||++|||||++
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~----------~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELF----------PVLKEMLGRRGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHH----------HhHHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999876 99999964311 1 111 112222221 123344556667899999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001580 820 RSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 888 (1050)
Q Consensus 820 ~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 888 (1050)
+|++|||||||++||+.++..+++.|.+..+ ++|+|++||+++++.. ||+|+++++|++++.|+++++.
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 9999999999999999999999999998653 7899999999999986 9999999999999999999873
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=367.42 Aligned_cols=215 Identities=26% Similarity=0.439 Sum_probs=182.3
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheE
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 744 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 744 (1050)
.++++|++++|++..+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 48999999999753335999999999999999999999999999999999999999999999999998877778889999
Q ss_pred EEcCCcc-cc-cccHHHhcccCCC---CCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001580 745 IIPQSPV-LF-SGTVRFNLDPFSE---HSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 815 (1050)
Q Consensus 745 ~v~Q~~~-lf-~~tv~~nl~~~~~---~~~~----~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAr 815 (1050)
|+||++. +| ..|+++|+.+... .... ++.++++.. |+.......+.+||||||||++|||
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrl~lar 155 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQV-----------DMLERADYEPNALSGGQKQRVAIAG 155 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHc-----------CCchhhhCCcccCCHHHHHHHHHHH
Confidence 9999984 44 5589999865311 1111 222333333 3333445566789999999999999
Q ss_pred HHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001580 816 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 890 (1050)
Q Consensus 816 all~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 890 (1050)
|++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++++..||||++|++|++++.|+++++...
T Consensus 156 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 156 VLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999998653 7899999999999877999999999999999999998653
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=368.89 Aligned_cols=217 Identities=22% Similarity=0.370 Sum_probs=181.5
Q ss_pred EEEEEEEEEeCCCC---CCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCC----ChHH
Q 001580 666 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF----GLMD 738 (1050)
Q Consensus 666 i~~~~v~~~y~~~~---~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~----~~~~ 738 (1050)
++++||+++|++.. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999996421 3699999999999999999999999999999999999999999999999998753 3456
Q ss_pred HhhheEEEcCCc--ccccccHHHhcccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHH
Q 001580 739 LRKILGIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLS 812 (1050)
Q Consensus 739 ~r~~i~~v~Q~~--~lf~~tv~~nl~~~~---~~~~~~~~~~l~~~~~~~~i~~~p~gl~-t~v~~~~~~LSgGq~qrl~ 812 (1050)
+|+.|+|+||++ .+|..|+++|+.+.. .....+..+ .+.++++. .|+. ........+||||||||++
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~--~~l~~~~~~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEA-----LAREKLAL--VGISESLFEKNPFELSGGQMRRVA 155 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHH--cCCChhhhhCCcccCCHHHHHHHH
Confidence 788899999998 577789999996431 112222211 12233443 2554 2346667789999999999
Q ss_pred HHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC-CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001580 813 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889 (1050)
Q Consensus 813 lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 889 (1050)
|||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|||++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998653 7899999999999876 99999999999999999999865
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=367.49 Aligned_cols=215 Identities=27% Similarity=0.420 Sum_probs=183.5
Q ss_pred cEEEEEEEEEeCCC-CCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhhe
Q 001580 665 SIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 743 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~-~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i 743 (1050)
.++++||+++|+.. ..++|+|+||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 38999999999642 23599999999999999999999999999999999999999999999999999877777788899
Q ss_pred EEEcCCcc--cccccHHHhcccCC---CCCHHH----HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001580 744 GIIPQSPV--LFSGTVRFNLDPFS---EHSDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 814 (1050)
Q Consensus 744 ~~v~Q~~~--lf~~tv~~nl~~~~---~~~~~~----~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lA 814 (1050)
+|+||++. ++..|+.+|+.+.. .....+ +.++++.+++.+ ........||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLD-----------FKTREPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHh-----------HhhCCcccCCHHHHHHHHHH
Confidence 99999983 56779999997431 122222 233444444433 34445578999999999999
Q ss_pred HHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001580 815 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 890 (1050)
Q Consensus 815 rall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 890 (1050)
|||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++++..||+|++|++|++++.|+++++...
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999998753 7899999999999978999999999999999999998754
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=359.48 Aligned_cols=211 Identities=25% Similarity=0.409 Sum_probs=173.0
Q ss_pred EEEEEEEEEeCCCC--CCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCCh---HHHh
Q 001580 666 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL---MDLR 740 (1050)
Q Consensus 666 i~~~~v~~~y~~~~--~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~---~~~r 740 (1050)
++++||+++|++.. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996431 269999999999999999999999999999999999999999999999999987663 4677
Q ss_pred hheEEEcCCcc--cc-cccHHHhcccC----CCCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHH
Q 001580 741 KILGIIPQSPV--LF-SGTVRFNLDPF----SEHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLS 812 (1050)
Q Consensus 741 ~~i~~v~Q~~~--lf-~~tv~~nl~~~----~~~~~~~~~~~l~~~~~~~~i~~~p~gl~-t~v~~~~~~LSgGq~qrl~ 812 (1050)
+.++|+||++. ++ ..|+++|+.+. ....+.+..+.. ..+.++.+ |+. ........+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~----~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~ 155 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEA----VLLLLVGV--GLPEEVLNRYPHELSGGQRQRVA 155 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHH----HHHHHHHC--CCChhHhhCCchhcCHHHHHHHH
Confidence 88999999993 44 45999998632 111111111100 12333432 453 4556677889999999999
Q ss_pred HHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001580 813 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 882 (1050)
Q Consensus 813 lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 882 (1050)
|||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|||++||+++.+.. ||+|++|++|++++.|
T Consensus 156 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 156 IARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999999999999998754 7899999999999985 9999999999998754
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=361.96 Aligned_cols=203 Identities=28% Similarity=0.395 Sum_probs=174.3
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheE
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 744 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 744 (1050)
.|+++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .+++.++
T Consensus 12 ~l~i~~l~~~~~~~--~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i~ 84 (257)
T PRK11247 12 PLLLNAVSKRYGER--TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDTR 84 (257)
T ss_pred cEEEEEEEEEECCc--ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCceE
Confidence 49999999999643 6999999999999999999999999999999999999999999999998763 4677899
Q ss_pred EEcCCccccc-ccHHHhcccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 001580 745 IIPQSPVLFS-GTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 822 (1050)
Q Consensus 745 ~v~Q~~~lf~-~tv~~nl~~~~~-~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~ 822 (1050)
|+||++.+|. .|+++|+.+... ..+.++.++++..+ +.........+||||||||++|||||+++|+
T Consensus 85 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LSgGqkqrl~laraL~~~p~ 153 (257)
T PRK11247 85 LMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVG-----------LADRANEWPAALSGGQKQRVALARALIHRPG 153 (257)
T ss_pred EEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcC-----------ChhHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999887 599999975321 12233444444444 4444455567899999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChh
Q 001580 823 ILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPE 885 (1050)
Q Consensus 823 illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~ 885 (1050)
+|||||||++||+.++..+.+.|+++. .++|+|+|||+++++.. ||+|++|++|++++.|+.+
T Consensus 154 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 154 LLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999999998864 37899999999999866 9999999999999988765
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=353.80 Aligned_cols=223 Identities=30% Similarity=0.417 Sum_probs=193.1
Q ss_pred cEEEEEEEEEeCCCCC----------------------CceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCcc
Q 001580 665 SIKFEDVVLRYRPELP----------------------PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 722 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~----------------------~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G 722 (1050)
.|+++||++-|+.+.. ..++|+||+|+.||++.|.|-||||||||+++|.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 4899999998864311 138999999999999999999999999999999999999999
Q ss_pred EEEECCeecCCCChHHH----hhheEEEcCCcccccc-cHHHhcccCCCC-------CHHHHHHHHHHhcHHHHHHHccC
Q 001580 723 RILIDGFDIAKFGLMDL----RKILGIIPQSPVLFSG-TVRFNLDPFSEH-------SDADLWEALERAHLKDAIRRNSL 790 (1050)
Q Consensus 723 ~i~~~g~~i~~~~~~~~----r~~i~~v~Q~~~lf~~-tv~~nl~~~~~~-------~~~~~~~~l~~~~~~~~i~~~p~ 790 (1050)
+|.++|.|+.+++..++ |+++++|+|+..||.. ||.+|..|+-+. ..+...++++.+++.+|-.+.|
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp- 162 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP- 162 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-
Confidence 99999999999998876 4569999999999976 999999876431 1234556666777766666655
Q ss_pred CcchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-c
Q 001580 791 GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-C 867 (1050)
Q Consensus 791 gl~t~v~~~~~~LSgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~ 867 (1050)
.+||||+||||.|||||..+|+|||+|||+|+|||--+..+++.|.++.+ ++||++||||+++..+ .
T Consensus 163 ----------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 163 ----------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred ----------ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 68999999999999999999999999999999999999999999987643 6999999999999876 9
Q ss_pred CEEEEEeCCEEEEecChhHHhhcCCChHHHH
Q 001580 868 DRILLLDSGRVLEYDTPEELLSNEGSSFSKM 898 (1050)
Q Consensus 868 d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~ 898 (1050)
|||.+|++|+|+..|||+|++.++...|-.-
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~~ 263 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPANDYVRD 263 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCccHHHHHH
Confidence 9999999999999999999998876666543
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=367.84 Aligned_cols=215 Identities=25% Similarity=0.414 Sum_probs=182.2
Q ss_pred cEEEEEEEEEeCCC----CCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCC-hHHH
Q 001580 665 SIKFEDVVLRYRPE----LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG-LMDL 739 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~----~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~-~~~~ 739 (1050)
.++++|++++|+.. .+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 48999999999632 236999999999999999999999999999999999999999999999999987643 3557
Q ss_pred hhheEEEcCCcc--cccccHHHhcccCCC---CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001580 740 RKILGIIPQSPV--LFSGTVRFNLDPFSE---HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 810 (1050)
Q Consensus 740 r~~i~~v~Q~~~--lf~~tv~~nl~~~~~---~~----~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qr 810 (1050)
|+.+||+||+|. ++..|+.+|+.+... .. ++++.++++.+++. ........+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~-----------~~~~~~~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMY-----------EYRRHAPHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCH-----------hHhhCCcccCCHHHHHH
Confidence 889999999984 666689999975321 11 12344444444444 44444557899999999
Q ss_pred HHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHh
Q 001580 811 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELL 888 (1050)
Q Consensus 811 l~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~ 888 (1050)
++|||||+.+|++|||||||++||+.++..+.+.|+++. .+.|||++||+++++..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999874 378999999999998779999999999999999999987
Q ss_pred hc
Q 001580 889 SN 890 (1050)
Q Consensus 889 ~~ 890 (1050)
.+
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 54
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=361.34 Aligned_cols=219 Identities=21% Similarity=0.377 Sum_probs=182.3
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhcccc--C---CccEEEECCeecCCC--Ch
Q 001580 664 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE--L---ERGRILIDGFDIAKF--GL 736 (1050)
Q Consensus 664 ~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~--p---~~G~i~~~g~~i~~~--~~ 736 (1050)
+.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.++|.++... ..
T Consensus 3 ~~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 80 (252)
T PRK14256 3 NKVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80 (252)
T ss_pred cEEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCCh
Confidence 45999999999974 369999999999999999999999999999999999986 4 689999999998653 34
Q ss_pred HHHhhheEEEcCCccccc-ccHHHhcccCC---C-CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhH
Q 001580 737 MDLRKILGIIPQSPVLFS-GTVRFNLDPFS---E-HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 807 (1050)
Q Consensus 737 ~~~r~~i~~v~Q~~~lf~-~tv~~nl~~~~---~-~~~----~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq 807 (1050)
..+|+.++|+||++.+|. .|+++|+.+.. . ... +++.++++..++...+ .......+.+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~ 153 (252)
T PRK14256 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEV-------KDRLKSNAMELSGGQ 153 (252)
T ss_pred HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hHHhhCCcCcCCHHH
Confidence 467888999999999887 59999996421 1 111 2233334443332211 123345667899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhH
Q 001580 808 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 886 (1050)
Q Consensus 808 ~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~e 886 (1050)
|||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+++|||++||+++++.. ||++++|++|++++.|++++
T Consensus 154 ~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14256 154 QQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKK 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998777899999999999866 99999999999999999999
Q ss_pred HhhcC
Q 001580 887 LLSNE 891 (1050)
Q Consensus 887 l~~~~ 891 (1050)
+....
T Consensus 234 ~~~~~ 238 (252)
T PRK14256 234 IFTTP 238 (252)
T ss_pred HHhCC
Confidence 87654
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=363.26 Aligned_cols=218 Identities=25% Similarity=0.437 Sum_probs=184.0
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhcccc-----CCccEEEECCeecCC--CChH
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGLM 737 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~-----p~~G~i~~~g~~i~~--~~~~ 737 (1050)
.|+++|++++|++ +++|+|+||+|.+||++||+||||||||||+++|+|+++ |++|+|.++|.++.. .+..
T Consensus 20 ~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 97 (267)
T PRK14237 20 ALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVY 97 (267)
T ss_pred EEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChH
Confidence 5999999999964 379999999999999999999999999999999999997 589999999999864 2345
Q ss_pred HHhhheEEEcCCcccccccHHHhcccCCC---C-CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001580 738 DLRKILGIIPQSPVLFSGTVRFNLDPFSE---H-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 809 (1050)
Q Consensus 738 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~---~-~~----~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~q 809 (1050)
.+|+.|+|+||++.+|..|+++|+.+... . .. .++.++++..++.+.+ +...+..+.+|||||||
T Consensus 98 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~G~~q 170 (267)
T PRK14237 98 EMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV-------KDDLHKSALTLSGGQQQ 170 (267)
T ss_pred HHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh-------hhhhcCCcccCCHHHHH
Confidence 67888999999999998899999975311 1 11 2233334444332221 23456677899999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001580 810 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 888 (1050)
Q Consensus 810 rl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 888 (1050)
|++|||||+++|++|||||||++||+.+...+.+.|+++.++.|+|+|||+++.+.. ||++++|++|++++.|+++++.
T Consensus 171 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 171 RLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999998677999999999999866 9999999999999999999997
Q ss_pred hcC
Q 001580 889 SNE 891 (1050)
Q Consensus 889 ~~~ 891 (1050)
+.+
T Consensus 251 ~~~ 253 (267)
T PRK14237 251 TNP 253 (267)
T ss_pred cCC
Confidence 643
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-41 Score=356.83 Aligned_cols=200 Identities=26% Similarity=0.400 Sum_probs=169.0
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChH---HHhhh
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM---DLRKI 742 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~---~~r~~ 742 (1050)
++++|++++|+.+ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.. .+++.
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 7899999999522 3699999999999999999999999999999999999999999999999999876543 36778
Q ss_pred eEEEcCCccccc-ccHHHhcccCC---CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001580 743 LGIIPQSPVLFS-GTVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 814 (1050)
Q Consensus 743 i~~v~Q~~~lf~-~tv~~nl~~~~---~~~----~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lA 814 (1050)
++|+||++.+|. .|+++|+.+.. ... ++++.++++..++.+ .......+||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~la 149 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEH-----------KADAFPEQLSGGEQQRVAIA 149 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHHHHHHHHH
Confidence 999999999886 59999986421 111 223444444444433 33344468999999999999
Q ss_pred HHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCE
Q 001580 815 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGR 877 (1050)
Q Consensus 815 rall~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~ 877 (1050)
|||+.+|++|||||||++||+.++..+.+.|+++. +++|+|++||+++++.. ||++++|++|+
T Consensus 150 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 150 RAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999999864 47999999999999987 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=363.27 Aligned_cols=218 Identities=27% Similarity=0.457 Sum_probs=180.1
Q ss_pred EEEEEEEEEeCCC-------CCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHH
Q 001580 666 IKFEDVVLRYRPE-------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD 738 (1050)
Q Consensus 666 i~~~~v~~~y~~~-------~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~ 738 (1050)
++++||++.|++. .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999631 246999999999999999999999999999999999999999999999999998766543
Q ss_pred ---HhhheEEEcCCcc--ccc-ccHHHhcccC----CCCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhH
Q 001580 739 ---LRKILGIIPQSPV--LFS-GTVRFNLDPF----SEHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQ 807 (1050)
Q Consensus 739 ---~r~~i~~v~Q~~~--lf~-~tv~~nl~~~----~~~~~~~~~~~l~~~~~~~~i~~~p~gl~-t~v~~~~~~LSgGq 807 (1050)
+|+.|+|+||++. ++. .|+++|+.+. ....... ....+.++++.+ |++ ......+..|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~-----~~~~~~~~l~~~--gl~~~~~~~~~~~LSgGe 155 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESE-----QKARIAELLDMV--GLRSEDADKLPRQLSGGQ 155 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHH-----HHHHHHHHHHHc--CCChhhhhCChhhCCHHH
Confidence 5778999999983 443 5999998531 1111111 011223344443 453 34456677899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecCh
Q 001580 808 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 884 (1050)
Q Consensus 808 ~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~ 884 (1050)
|||++|||||+.+|++|||||||++||+.++..+.+.|+++.+ ++|||+|||+++.+.. ||++++|++|++++.|++
T Consensus 156 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~ 235 (265)
T TIGR02769 156 LQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDV 235 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCH
Confidence 9999999999999999999999999999999999999998753 7899999999999976 999999999999999999
Q ss_pred hHHhhc
Q 001580 885 EELLSN 890 (1050)
Q Consensus 885 ~el~~~ 890 (1050)
+++...
T Consensus 236 ~~~~~~ 241 (265)
T TIGR02769 236 AQLLSF 241 (265)
T ss_pred HHHcCC
Confidence 999763
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=361.68 Aligned_cols=218 Identities=21% Similarity=0.400 Sum_probs=183.8
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhcccc-----CCccEEEECCeecCC--CChH
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGLM 737 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~-----p~~G~i~~~g~~i~~--~~~~ 737 (1050)
.|+++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++.. .++.
T Consensus 10 ~l~i~~v~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 10 VLRTENLNVYYGSF--LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEEeeeEEEECCE--EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 48999999999643 69999999999999999999999999999999999986 479999999998853 3455
Q ss_pred HHhhheEEEcCCcccccccHHHhcccCCC---CC---HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 001580 738 DLRKILGIIPQSPVLFSGTVRFNLDPFSE---HS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 811 (1050)
Q Consensus 738 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~---~~---~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl 811 (1050)
.+|+.++|+||++.+|..|+.+|+.+... .. ++++.++++.+++.+.+. ......+.+||||||||+
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVK-------DKLKQSGLSLSGGQQQRL 160 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHH-------HHhcCCcccCCHHHHHHH
Confidence 67888999999999888899999975321 11 122334445444433322 234556778999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEe---------CCEEEEe
Q 001580 812 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLD---------SGRVLEY 881 (1050)
Q Consensus 812 ~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~---------~G~i~~~ 881 (1050)
+|||||+.+|+||||||||++||+.++..+.+.|+++.+++|||++||+++.+.. ||+|++|+ +|++++.
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~ 240 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF 240 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 9999999999999999999999999999999999998777899999999999877 99999998 8999999
Q ss_pred cChhHHhhcC
Q 001580 882 DTPEELLSNE 891 (1050)
Q Consensus 882 g~~~el~~~~ 891 (1050)
|+++|+.+.+
T Consensus 241 ~~~~~~~~~~ 250 (264)
T PRK14243 241 DRTEKIFNSP 250 (264)
T ss_pred CCHHHHHhCC
Confidence 9999997654
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=362.37 Aligned_cols=218 Identities=28% Similarity=0.417 Sum_probs=180.8
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhcccc-----CCccEEEECCeecCC--CChH
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGLM 737 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~-----p~~G~i~~~g~~i~~--~~~~ 737 (1050)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 3899999999964 369999999999999999999999999999999999997 479999999999854 2344
Q ss_pred HHhhheEEEcCCcccccccHHHhcccCCC---CC-H----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001580 738 DLRKILGIIPQSPVLFSGTVRFNLDPFSE---HS-D----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 809 (1050)
Q Consensus 738 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~---~~-~----~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~q 809 (1050)
.+|+.++|++|++.+|..|+++|+.+... .. . .++.++++..++.. ...........+|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWK-------ETKDNLDRNAQAFSGGQQQ 154 (251)
T ss_pred HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCc-------chHHHhccChhhCCHHHHH
Confidence 56888999999999998899999974311 11 1 12223333322211 0112345566789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001580 810 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 888 (1050)
Q Consensus 810 rl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 888 (1050)
|++|||||+++|++|||||||++||+.+++.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667999999999999876 9999999999999999999987
Q ss_pred hcC
Q 001580 889 SNE 891 (1050)
Q Consensus 889 ~~~ 891 (1050)
..+
T Consensus 235 ~~~ 237 (251)
T PRK14251 235 IAP 237 (251)
T ss_pred hCC
Confidence 544
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=366.70 Aligned_cols=212 Identities=26% Similarity=0.433 Sum_probs=177.8
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecC--CCChHHHhhhe
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA--KFGLMDLRKIL 743 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~--~~~~~~~r~~i 743 (1050)
++++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+.+
T Consensus 2 l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 2 LATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred eEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 789999999964 36999999999999999999999999999999999999999999999999985 23345678889
Q ss_pred EEEcCCcc--cccccHHHhcccCC---CCCHHH----HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001580 744 GIIPQSPV--LFSGTVRFNLDPFS---EHSDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 814 (1050)
Q Consensus 744 ~~v~Q~~~--lf~~tv~~nl~~~~---~~~~~~----~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lA 814 (1050)
+|+||++. ++..|+.+|+.+.. .....+ +.++++..+ ++........+||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgG~~qrl~la 148 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVD-----------AQHFRHQPIQCLSHGQKKRVAIA 148 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------CHhHhcCCchhCCHHHHHHHHHH
Confidence 99999985 56668999986421 112222 223333333 33334445678999999999999
Q ss_pred HHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001580 815 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890 (1050)
Q Consensus 815 rall~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 890 (1050)
|||+.+|+||||||||++||+.++..+.+.|+++. +++|||+|||+++.+.. ||++++|++|++++.|+++++...
T Consensus 149 raL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 149 GALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999864 47899999999999976 999999999999999999998653
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=372.52 Aligned_cols=224 Identities=21% Similarity=0.380 Sum_probs=181.5
Q ss_pred EEEEEEEEEeCCCC--CCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhcccc----CCccEEEECCeecCCCChHHH
Q 001580 666 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE----LERGRILIDGFDIAKFGLMDL 739 (1050)
Q Consensus 666 i~~~~v~~~y~~~~--~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~----p~~G~i~~~g~~i~~~~~~~~ 739 (1050)
++++|+++.|+... ..+|+||||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++..++...+
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 79999999996432 259999999999999999999999999999999999998 489999999999988887665
Q ss_pred hh----heEEEcCCcc--ccc-ccHHHhcc----cCCCCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCC
Q 001580 740 RK----ILGIIPQSPV--LFS-GTVRFNLD----PFSEHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFS 804 (1050)
Q Consensus 740 r~----~i~~v~Q~~~--lf~-~tv~~nl~----~~~~~~----~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LS 804 (1050)
++ .|+||||++. ++. .|+.+++. ...... .+.+.++++..++.+. ....+..+.+||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~--------~~~l~~~p~~LS 155 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDP--------ASRLDVYPHQLS 155 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------HHHHhCCchhCC
Confidence 43 6999999984 443 26665542 211111 1223344444333211 123456678899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEe
Q 001580 805 VGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEY 881 (1050)
Q Consensus 805 gGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~ 881 (1050)
|||||||+|||||+.+|+|||+||||++||+.++..+.+.|+++.+ +.|+|+||||++.+.. ||||++|++|+|++.
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998753 7899999999999866 999999999999999
Q ss_pred cChhHHhhcCCChHHH
Q 001580 882 DTPEELLSNEGSSFSK 897 (1050)
Q Consensus 882 g~~~el~~~~~~~~~~ 897 (1050)
|+++++.++....|.+
T Consensus 236 g~~~~~~~~p~hpyt~ 251 (326)
T PRK11022 236 GKAHDIFRAPRHPYTQ 251 (326)
T ss_pred CCHHHHhhCCCChHHH
Confidence 9999998766555554
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=355.09 Aligned_cols=201 Identities=24% Similarity=0.353 Sum_probs=169.3
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChH---HHhhh
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM---DLRKI 742 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~---~~r~~ 742 (1050)
++++|++++|+++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...++. .+|+.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4689999999643 3699999999999999999999999999999999999999999999999999776543 46788
Q ss_pred eEEEcCCcccccc-cHHHhcccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001580 743 LGIIPQSPVLFSG-TVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 814 (1050)
Q Consensus 743 i~~v~Q~~~lf~~-tv~~nl~~~~---~~~~----~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lA 814 (1050)
++|+||++.+|.. |+++|+.+.. .... +++.++++..+ ++........+||||||||++||
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv~la 148 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVG-----------LSHKHRALPAELSGGEQQRVAIA 148 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------CHHHhhCChhhcCHHHHHHHHHH
Confidence 9999999998875 9999996431 1111 22333344433 43344445568999999999999
Q ss_pred HHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEE
Q 001580 815 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRV 878 (1050)
Q Consensus 815 rall~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i 878 (1050)
|||+.+|++|||||||++||+.+++.+.+.|+++. +++|+|+|||+++.+.. ||++++|++|++
T Consensus 149 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 149 RAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999864 47999999999999987 999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=359.35 Aligned_cols=218 Identities=26% Similarity=0.416 Sum_probs=183.4
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCC-----ccEEEECCeecCCC--ChH
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAKF--GLM 737 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~-----~G~i~~~g~~i~~~--~~~ 737 (1050)
.++++|++++|++ +++|+|+||+|.+|+++||+||||||||||+++|+|+++|+ +|+|.++|.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 4 KIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred eEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 4899999999964 36999999999999999999999999999999999999997 69999999988643 345
Q ss_pred HHhhheEEEcCCcccccccHHHhcccCCC---C-CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001580 738 DLRKILGIIPQSPVLFSGTVRFNLDPFSE---H-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 809 (1050)
Q Consensus 738 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~---~-~~----~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~q 809 (1050)
.+|+.++|+||++.+|..|+++|+.+... . .. +.+.++++..++.+. +.......+.+|||||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDE-------VKDNLHKSGLALSGGQQQ 154 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchh-------hhhHhhCCcccCCHHHHH
Confidence 67888999999999998899999975321 1 11 112223333333222 223456677899999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001580 810 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 888 (1050)
Q Consensus 810 rl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 888 (1050)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|||+|||+++.+.. ||++++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667999999999999877 8999999999999999999987
Q ss_pred hcC
Q 001580 889 SNE 891 (1050)
Q Consensus 889 ~~~ 891 (1050)
..+
T Consensus 235 ~~~ 237 (251)
T PRK14249 235 SRP 237 (251)
T ss_pred hCC
Confidence 654
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=363.41 Aligned_cols=219 Identities=25% Similarity=0.404 Sum_probs=183.2
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhcccc-----CCccEEEECCeecCC--CCh
Q 001580 664 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGL 736 (1050)
Q Consensus 664 ~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~-----p~~G~i~~~g~~i~~--~~~ 736 (1050)
..++++|++++|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 23 ~~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 23 VVFDTQNLNLWYGED--HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred eEEEEeeeEEEECCc--ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 359999999999743 69999999999999999999999999999999999997 699999999999853 344
Q ss_pred HHHhhheEEEcCCcccccccHHHhcccCC---CCCHH-H----HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHH
Q 001580 737 MDLRKILGIIPQSPVLFSGTVRFNLDPFS---EHSDA-D----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 808 (1050)
Q Consensus 737 ~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~~~~-~----~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~ 808 (1050)
..+++.++|+||++.+|..|+++|+.+.. ...+. . +.++++..++. .++.......+..||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~l~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIW-------DELKDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCc-------chHHHHHhcCcccCCHHHH
Confidence 56788899999999999889999997421 11111 1 12222222111 1333445667789999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 001580 809 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 887 (1050)
Q Consensus 809 qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 887 (1050)
||++|||||+.+|+||||||||++||+.+...+.+.|+++.+++|+|++||+++++.. ||++++|++|++++.|+++++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999876 999999999999999999998
Q ss_pred hhcC
Q 001580 888 LSNE 891 (1050)
Q Consensus 888 ~~~~ 891 (1050)
...+
T Consensus 254 ~~~~ 257 (271)
T PRK14238 254 FSNP 257 (271)
T ss_pred HcCC
Confidence 7654
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=362.92 Aligned_cols=220 Identities=26% Similarity=0.371 Sum_probs=181.1
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
++++|+++.|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 2 l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGGR--LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECCE--EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 7899999999643 69999999999999999999999999999999999999999999999999988887777888999
Q ss_pred EcCCcccc-cccHHHhcccCCC-CCHHH-HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 001580 746 IPQSPVLF-SGTVRFNLDPFSE-HSDAD-LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 822 (1050)
Q Consensus 746 v~Q~~~lf-~~tv~~nl~~~~~-~~~~~-~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~ 822 (1050)
+||++.++ ..|+++|+.+... ..... .........+.+.++.+ |+..........||||||||++||||++.+|+
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 157 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALART--ELSHLADRDMSTLSGGERQRVHVARALAQEPK 157 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 99998644 5699999965311 00000 00000011223334432 34444555667899999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHHHHHHcC-CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001580 823 ILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889 (1050)
Q Consensus 823 illLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 889 (1050)
+|||||||++||+.+...+.+.|++..+ +.|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 158 LLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999998753 7899999999999966 99999999999999999988754
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=360.93 Aligned_cols=218 Identities=26% Similarity=0.430 Sum_probs=182.1
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccC-----CccEEEECCeecCCC--ChH
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKF--GLM 737 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p-----~~G~i~~~g~~i~~~--~~~ 737 (1050)
.|+++|+++.|++ .++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +..
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 3899999999964 3699999999999999999999999999999999999984 899999999988653 234
Q ss_pred HHhhheEEEcCCcccccccHHHhcccCC----CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001580 738 DLRKILGIIPQSPVLFSGTVRFNLDPFS----EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 809 (1050)
Q Consensus 738 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~----~~~~----~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~q 809 (1050)
.+++.++|+||++.+|..|+++|+.+.. ...+ +.+.++++..++.+.+ +...+....+|||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~q 153 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEV-------KSELNKPGTRLSGGQQQ 153 (250)
T ss_pred HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh-------HHHHhCChhhcCHHHHH
Confidence 5678899999999999899999997421 1111 1233333333332211 23355667889999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001580 810 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 888 (1050)
Q Consensus 810 rl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 888 (1050)
|++|||||+.+|+||||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999999999999999997778999999999998766 9999999999999999999987
Q ss_pred hcC
Q 001580 889 SNE 891 (1050)
Q Consensus 889 ~~~ 891 (1050)
+..
T Consensus 234 ~~~ 236 (250)
T PRK14262 234 ERP 236 (250)
T ss_pred hCC
Confidence 643
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=359.87 Aligned_cols=210 Identities=24% Similarity=0.360 Sum_probs=188.1
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhhe
Q 001580 664 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 743 (1050)
Q Consensus 664 ~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i 743 (1050)
+.|+++|+++.. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| .|
T Consensus 38 ~~l~i~nls~~~----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~i 100 (282)
T cd03291 38 NNLFFSNLCLVG----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------RI 100 (282)
T ss_pred CeEEEEEEEEec----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------EE
Confidence 459999999952 3699999999999999999999999999999999999999999999997 39
Q ss_pred EEEcCCcccccccHHHhcccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 001580 744 GIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 823 (1050)
Q Consensus 744 ~~v~Q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~i 823 (1050)
+|+||++.+|..|+++|+.+.......++.++++.+++.+.+..+|.++++.+++.+..||||||||++|||||+.+|++
T Consensus 101 ~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~i 180 (282)
T cd03291 101 SFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADL 180 (282)
T ss_pred EEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999998999999976433334455667777888888999999998888888899999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHH-HHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001580 824 LVLDEATAAVDVRTDALIQKTI-REEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 890 (1050)
Q Consensus 824 llLDEpts~LD~~~~~~i~~~l-~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 890 (1050)
|||||||++||+.++..+.+.+ +....+.|||++||+++.+..||++++|++|++++.|+++++...
T Consensus 181 LiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 248 (282)
T cd03291 181 YLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL 248 (282)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999888754 555568999999999999877999999999999999999998754
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=355.47 Aligned_cols=196 Identities=33% Similarity=0.483 Sum_probs=163.9
Q ss_pred EEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEEEc
Q 001580 668 FEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIP 747 (1050)
Q Consensus 668 ~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~ 747 (1050)
++|++++|++. ++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .+|+.++|+|
T Consensus 2 ~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v~ 74 (213)
T cd03235 2 VEDLTVSYGGH--PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYVP 74 (213)
T ss_pred cccceeEECCE--EeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEec
Confidence 67999999643 6999999999999999999999999999999999999999999999998764 4677899999
Q ss_pred CCccc---ccccHHHhcccCCCC-----------CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001580 748 QSPVL---FSGTVRFNLDPFSEH-----------SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 813 (1050)
Q Consensus 748 Q~~~l---f~~tv~~nl~~~~~~-----------~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~l 813 (1050)
|++.+ +..|+++|+.+.... ..+++.++++..+ ++........+||||||||++|
T Consensus 75 q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgG~~qrv~l 143 (213)
T cd03235 75 QRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVG-----------LSELADRQIGELSGGQQQRVLL 143 (213)
T ss_pred cccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcC-----------CHHHHhCCcccCCHHHHHHHHH
Confidence 99876 557999998643211 1122333344433 4444445567899999999999
Q ss_pred HHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001580 814 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 882 (1050)
Q Consensus 814 Arall~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 882 (1050)
||||+.+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++++.. ||++++|++| +++.|
T Consensus 144 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 144 ARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 999999999999999999999999999999999865 57899999999999976 9999999886 55543
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=373.83 Aligned_cols=211 Identities=22% Similarity=0.349 Sum_probs=176.1
Q ss_pred CCCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCCCee----------
Q 001580 38 GLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-----PVSDASA---------- 102 (1050)
Q Consensus 38 ~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~-----~~~g~~~---------- 102 (1050)
....|+++|++|+|+. ..+++|+|+||+|++|+++||+|+||||||||+++|+|+.+ |++|.+.
T Consensus 77 ~~~~i~~~nls~~y~~-~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~ 155 (329)
T PRK14257 77 HANVFEIRNFNFWYMN-RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155 (329)
T ss_pred cCceEEEEeeEEEecC-CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 3357999999999974 23579999999999999999999999999999999999986 4566532
Q ss_pred ----EEeCcEEEEecCCCCCcccHHHHhccCCCC---C-HHH----HHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCH
Q 001580 103 ----VIRGTVAYVPQVSWIFNATVRDNILFGSAF---E-PAR----YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISG 170 (1050)
Q Consensus 103 ----~~~~~i~~v~Q~~~l~~~TV~eni~~g~~~---~-~~~----~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSG 170 (1050)
..++.++||||+|++|+.||+||+.|+..+ . .+. +...++.+++...+ .+.+++++.+|||
T Consensus 156 ~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l-------~~~~~~~~~~LSg 228 (329)
T PRK14257 156 ISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEV-------KDDLDKAGNALSG 228 (329)
T ss_pred cchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchh-------hhhhhCCcccCCH
Confidence 124579999999999999999999986421 1 221 34455666654333 2467889999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccC
Q 001580 171 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGT 249 (1050)
Q Consensus 171 GqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 249 (1050)
||||||+|||||+.+|+||||||||++||+.+..++.+.+.... +++|+|+|||+++++.. ||||++|++|++++.|+
T Consensus 229 GqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~-~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~ 307 (329)
T PRK14257 229 GQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELK-KKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGE 307 (329)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999888766543 47999999999999987 89999999999999999
Q ss_pred hhhhhcCh
Q 001580 250 FEDLSNNG 257 (1050)
Q Consensus 250 ~~~l~~~~ 257 (1050)
++++...+
T Consensus 308 ~~~l~~~~ 315 (329)
T PRK14257 308 TKTIFIHP 315 (329)
T ss_pred HHHHhcCC
Confidence 99987653
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=359.61 Aligned_cols=218 Identities=24% Similarity=0.386 Sum_probs=182.9
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccC-----CccEEEECCeecCCCC--hH
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKFG--LM 737 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p-----~~G~i~~~g~~i~~~~--~~ 737 (1050)
.++++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++...+ ..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 4 KMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred EEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 4899999999964 3699999999999999999999999999999999999875 7999999999986532 34
Q ss_pred HHhhheEEEcCCcccccccHHHhcccCCC---C-CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001580 738 DLRKILGIIPQSPVLFSGTVRFNLDPFSE---H-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 809 (1050)
Q Consensus 738 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~---~-~~----~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~q 809 (1050)
..|+.++|+||++.+|..|+++|+.+... . .. .++.++++.+++.+ ++..........|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G~~q 154 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWD-------EVKDDLKKSALKLSGGQQQ 154 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCch-------hhhhHhhCCcccCCHHHHH
Confidence 56888999999999998999999975321 1 11 12333444433321 1223345567789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001580 810 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 888 (1050)
Q Consensus 810 rl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 888 (1050)
|++||||++.+|+||||||||++||+.+...+.+.|+++.++.|+|+|||+++.+.. |||+++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 155 RLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987767999999999999877 9999999999999999999987
Q ss_pred hcC
Q 001580 889 SNE 891 (1050)
Q Consensus 889 ~~~ 891 (1050)
...
T Consensus 235 ~~~ 237 (251)
T PRK14270 235 LEP 237 (251)
T ss_pred cCC
Confidence 543
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=340.45 Aligned_cols=172 Identities=38% Similarity=0.671 Sum_probs=160.6
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
++++|++++|+....++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 46899999997533469999999999999999999999999999999999999999999999999988888888899999
Q ss_pred EcCCcccccccHHHhcccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCEEE
Q 001580 746 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 825 (1050)
Q Consensus 746 v~Q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~ill 825 (1050)
++|++.+|..|+++|+ ||||||||++||||++.+|++||
T Consensus 81 ~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~ll 119 (173)
T cd03246 81 LPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRILV 119 (173)
T ss_pred ECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999988999887 99999999999999999999999
Q ss_pred EeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhhcCEEEEEeCCEE
Q 001580 826 LDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLLDSGRV 878 (1050)
Q Consensus 826 LDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~vl~~G~i 878 (1050)
|||||++||+.++..+.+.|+++. +++|+|++||+++++..||++++|++|++
T Consensus 120 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 120 LDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 999999999999999999998875 47899999999999877999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=362.52 Aligned_cols=218 Identities=25% Similarity=0.440 Sum_probs=180.8
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhcccc-----CCccEEEECCeecCCCC--hHH
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAKFG--LMD 738 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~-----p~~G~i~~~g~~i~~~~--~~~ 738 (1050)
-+++|++++|++ .++|+|+||+|.+||++||+|+||||||||+++|+|+++ |++|+|.++|.++...+ ...
T Consensus 6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 478999999964 369999999999999999999999999999999999986 47999999999886543 235
Q ss_pred HhhheEEEcCCcccccccHHHhcccCC---CC--C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001580 739 LRKILGIIPQSPVLFSGTVRFNLDPFS---EH--S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 809 (1050)
Q Consensus 739 ~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~--~----~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~q 809 (1050)
+|+.++|+||++.+|..|+.+|+.+.. .. . ++++.++++..++.+. +.+.++..+.+|||||||
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~Gq~q 156 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEE-------LGDRLKDSAFELSGGQQQ 156 (251)
T ss_pred HhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCch-------hhhHhhcChhhCCHHHHH
Confidence 688899999999999889999986421 11 1 1122333333333221 122445567789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001580 810 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 888 (1050)
Q Consensus 810 rl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 888 (1050)
|++|||||+++|+||||||||++||+.+++.+.+.|+++.+++|+|++||+++++.. ||+|++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999988678999999999999876 9999999999999999999997
Q ss_pred hcCC
Q 001580 889 SNEG 892 (1050)
Q Consensus 889 ~~~~ 892 (1050)
..+.
T Consensus 237 ~~~~ 240 (251)
T PRK14244 237 KNPQ 240 (251)
T ss_pred cCCC
Confidence 6543
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=368.81 Aligned_cols=219 Identities=21% Similarity=0.375 Sum_probs=180.6
Q ss_pred ccEEEEEEEEEeCCCC---CCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCC----C-C
Q 001580 664 GSIKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK----F-G 735 (1050)
Q Consensus 664 ~~i~~~~v~~~y~~~~---~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~----~-~ 735 (1050)
+.|+++|++++|++.. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 4599999999996432 259999999999999999999999999999999999999999999999998852 1 3
Q ss_pred hHHHhhheEEEcCCc--ccccccHHHhcccCCC---CCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHH
Q 001580 736 LMDLRKILGIIPQSP--VLFSGTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQ 809 (1050)
Q Consensus 736 ~~~~r~~i~~v~Q~~--~lf~~tv~~nl~~~~~---~~~~~~~~~l~~~~~~~~i~~~p~gl~-t~v~~~~~~LSgGq~q 809 (1050)
...+|+.|+|+||++ .+|..|+++|+.+... ....+..+ .+.+.++.+ |+. ........+|||||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~ll~~~--~L~~~~~~~~~~~LS~Gq~q 157 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYK-----KVPELLKLV--QLPEDYVKRSPFELSGGQKR 157 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCChhHhcCChhhCCHHHHH
Confidence 456788899999998 4667799999975311 12222111 122333332 442 3455667789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhH
Q 001580 810 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 886 (1050)
Q Consensus 810 rl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~e 886 (1050)
|++|||||+.+|++|||||||++||+.+++.+++.|+++. .++|||+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 158 rv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 237 (289)
T PRK13645 158 RVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFE 237 (289)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999998865 37899999999999866 99999999999999999998
Q ss_pred Hhh
Q 001580 887 LLS 889 (1050)
Q Consensus 887 l~~ 889 (1050)
+..
T Consensus 238 ~~~ 240 (289)
T PRK13645 238 IFS 240 (289)
T ss_pred Hhc
Confidence 865
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=361.69 Aligned_cols=221 Identities=24% Similarity=0.362 Sum_probs=184.2
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHH-hhhe
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKIL 743 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~-r~~i 743 (1050)
.++++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...++... +..+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 5 LLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred eEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 4899999999964 369999999999999999999999999999999999999999999999999987776554 4469
Q ss_pred EEEcCCcccccc-cHHHhcccCCCC----------CH-HHHH--HHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001580 744 GIIPQSPVLFSG-TVRFNLDPFSEH----------SD-ADLW--EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 809 (1050)
Q Consensus 744 ~~v~Q~~~lf~~-tv~~nl~~~~~~----------~~-~~~~--~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~q 809 (1050)
+|+||++.+|.. |+++|+.+.... .+ .... .......+.++++.+ |++........+|||||||
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~q 160 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV--GLLEHANRQAGNLAYGQQR 160 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhC--ChhhhhhCChhhCCHHHHH
Confidence 999999999876 999999753110 00 0000 000111233445543 6666777788899999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhH
Q 001580 810 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 886 (1050)
Q Consensus 810 rl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~e 886 (1050)
|++|||||+.+|++|||||||++||+.++..+.+.|.++.+ ++|||++||+++.+.. ||++++|++|++++.|++++
T Consensus 161 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 240 (255)
T PRK11300 161 RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEE 240 (255)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHH
Confidence 99999999999999999999999999999999999988643 7899999999999876 99999999999999999998
Q ss_pred Hhh
Q 001580 887 LLS 889 (1050)
Q Consensus 887 l~~ 889 (1050)
+..
T Consensus 241 ~~~ 243 (255)
T PRK11300 241 IRN 243 (255)
T ss_pred Hhh
Confidence 864
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=358.66 Aligned_cols=217 Identities=26% Similarity=0.401 Sum_probs=182.4
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccC-----CccEEEECCeecC-CCChHH
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIA-KFGLMD 738 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p-----~~G~i~~~g~~i~-~~~~~~ 738 (1050)
.++++|+++.|++ +++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++. ..++..
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 3889999999974 3699999999999999999999999999999999999986 5999999999985 345567
Q ss_pred HhhheEEEcCCcccccccHHHhcccCCC---CC-H----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001580 739 LRKILGIIPQSPVLFSGTVRFNLDPFSE---HS-D----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 810 (1050)
Q Consensus 739 ~r~~i~~v~Q~~~lf~~tv~~nl~~~~~---~~-~----~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qr 810 (1050)
+|+.++|+||++.+|..|+++|+.+... .. + +++.++++..++.+ .+.........+||||||||
T Consensus 81 ~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~LS~G~~qr 153 (249)
T PRK14253 81 LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWD-------EVKDRLKSHAFGLSGGQQQR 153 (249)
T ss_pred HHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCch-------hhhHHhhcCcccCCHHHHHH
Confidence 7889999999999998999999974311 11 1 12223333333322 12234556677899999999
Q ss_pred HHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001580 811 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889 (1050)
Q Consensus 811 l~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 889 (1050)
++|||||+.+|+||||||||++||+.+...+.+.|+++.+++|||++||+++++.. ||++++|++|++++.|+++++..
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS 233 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999999999998777999999999999887 99999999999999999998865
Q ss_pred c
Q 001580 890 N 890 (1050)
Q Consensus 890 ~ 890 (1050)
.
T Consensus 234 ~ 234 (249)
T PRK14253 234 N 234 (249)
T ss_pred C
Confidence 4
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=355.04 Aligned_cols=203 Identities=28% Similarity=0.409 Sum_probs=170.9
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHH---Hhhh
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LRKI 742 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~---~r~~ 742 (1050)
++++|++++|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... +|+.
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 7899999999422 36999999999999999999999999999999999999999999999999998766443 6788
Q ss_pred eEEEcCCcccc-cccHHHhcccCC---CCCHHH----HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001580 743 LGIIPQSPVLF-SGTVRFNLDPFS---EHSDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 814 (1050)
Q Consensus 743 i~~v~Q~~~lf-~~tv~~nl~~~~---~~~~~~----~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lA 814 (1050)
++|+||++.++ ..|+++|+.+.. .....+ +.++++.. |+.........+||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~la 149 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKV-----------GLLDKAKNFPIQLSGGEQQRVGIA 149 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHc-----------CChhhhhCCchhCCHHHHHHHHHH
Confidence 99999999875 569999997531 122222 22333333 333344455678999999999999
Q ss_pred HHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEE
Q 001580 815 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 880 (1050)
Q Consensus 815 rall~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~ 880 (1050)
||++.+|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++++.. ||+|++|++|+++.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 150 RAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999999999864 47899999999999987 99999999999864
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=362.62 Aligned_cols=218 Identities=26% Similarity=0.411 Sum_probs=183.3
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccC-----CccEEEECCeecCC--CCh
Q 001580 664 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FGL 736 (1050)
Q Consensus 664 ~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p-----~~G~i~~~g~~i~~--~~~ 736 (1050)
+.++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 24 ~~l~~~nl~~~~~~~--~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 24 TALEVRNLNLFYGDK--QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred cEEEEEEEEEEECCe--eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 359999999999643 699999999999999999999999999999999999884 89999999999864 334
Q ss_pred HHHhhheEEEcCCcccccccHHHhcccCC---CC-CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHH
Q 001580 737 MDLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 808 (1050)
Q Consensus 737 ~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~-~~----~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~ 808 (1050)
..+|+.++|+||++.+|..|+++|+.+.. .. .. +.+.++++.+++.+.+ .+..+..+..||||||
T Consensus 102 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 174 (272)
T PRK14236 102 AELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEV-------KDRLHENAFGLSGGQQ 174 (272)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhH-------HHHhhCCcccCCHHHH
Confidence 56788999999999999889999996421 11 11 1233333433332211 2345666788999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 001580 809 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 887 (1050)
Q Consensus 809 qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 887 (1050)
||++|||||+++|+||||||||++||+.++..+.+.|+++.+++|+|++||+++++.. ||+|++|++|++++.|+++++
T Consensus 175 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 254 (272)
T PRK14236 175 QRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTL 254 (272)
T ss_pred HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999876 999999999999999999998
Q ss_pred hhc
Q 001580 888 LSN 890 (1050)
Q Consensus 888 ~~~ 890 (1050)
...
T Consensus 255 ~~~ 257 (272)
T PRK14236 255 FTS 257 (272)
T ss_pred hcC
Confidence 754
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=351.32 Aligned_cols=200 Identities=26% Similarity=0.405 Sum_probs=169.0
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
|+++|++++|++. . .|+||+|.+||++||+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 i~~~~l~~~~~~~--~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGEQ--P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCCE--e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEE
Confidence 4689999999642 2 39999999999999999999999999999999999999999999999876654 3578999
Q ss_pred EcCCcccccc-cHHHhcccCCC--C-----CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHH
Q 001580 746 IPQSPVLFSG-TVRFNLDPFSE--H-----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 817 (1050)
Q Consensus 746 v~Q~~~lf~~-tv~~nl~~~~~--~-----~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAral 817 (1050)
+||++.+|.. |+++|+.+... . .++++.++++..++.+. ......+||||||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~ia~al 143 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGL-----------EKRLPGELSGGERQRVALARVL 143 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHH-----------HhCCcccCCHHHHHHHHHHHHH
Confidence 9999999875 99999974321 1 12234445555444443 3444568999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001580 818 LRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 882 (1050)
Q Consensus 818 l~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 882 (1050)
+.+|++|||||||++||+.++..+.+.|+++. .++|+|++||+++++.. ||++++|++|++++.|
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999999865 37899999999999977 9999999999998754
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=365.79 Aligned_cols=213 Identities=26% Similarity=0.446 Sum_probs=179.3
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCC--CChHHHhhhe
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK--FGLMDLRKIL 743 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~--~~~~~~r~~i 743 (1050)
++++|++++|++. .++++|+||+|.+||++||+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.|
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 7899999999633 369999999999999999999999999999999999999999999999999852 2334578899
Q ss_pred EEEcCCc--ccccccHHHhcccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001580 744 GIIPQSP--VLFSGTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 814 (1050)
Q Consensus 744 ~~v~Q~~--~lf~~tv~~nl~~~~---~~~~----~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lA 814 (1050)
+|+||++ .+|..|+.+|+.+.. .... +++.++++.. |+.......+.+||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~-----------~L~~~~~~~~~~LS~Gq~qrv~la 149 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAV-----------GMEGFENKPPHHLSGGQKKRVAIA 149 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHC-----------CCchhhcCChhhCCHHHHHHHHHH
Confidence 9999997 467789999996421 1111 1233333333 333344455678999999999999
Q ss_pred HHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001580 815 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890 (1050)
Q Consensus 815 rall~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 890 (1050)
|||+.+|++|||||||++||+.+...+.+.|+++. .+.|||++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 150 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 150 GILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999875 47899999999999876 999999999999999999998753
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-40 Score=359.72 Aligned_cols=218 Identities=24% Similarity=0.407 Sum_probs=182.8
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccC-----CccEEEECCeecCCC--ChH
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKF--GLM 737 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p-----~~G~i~~~g~~i~~~--~~~ 737 (1050)
.|+++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++... +..
T Consensus 6 ~i~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYGEK--HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred eEEEeeeEEEECCe--eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 48999999999643 699999999999999999999999999999999999763 489999999998765 345
Q ss_pred HHhhheEEEcCCcccccccHHHhcccCCCC----CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001580 738 DLRKILGIIPQSPVLFSGTVRFNLDPFSEH----SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 809 (1050)
Q Consensus 738 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~----~~----~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~q 809 (1050)
..++.++|+||++.+|..|+++|+.+.... .. ..+.++++..++.+ ++.+..+..+.+|||||||
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~q 156 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWD-------EVKDRLHDSALSLSGGQQQ 156 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCch-------hhHHHhhcChhhCCHHHHH
Confidence 667889999999999988999999753211 11 12223333332211 2234456677889999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001580 810 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 888 (1050)
Q Consensus 810 rl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 888 (1050)
|++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 999999999999999999999999999999999999987667999999999999976 9999999999999999999987
Q ss_pred hcC
Q 001580 889 SNE 891 (1050)
Q Consensus 889 ~~~ 891 (1050)
..+
T Consensus 237 ~~~ 239 (253)
T PRK14261 237 ENP 239 (253)
T ss_pred hCC
Confidence 644
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=352.06 Aligned_cols=210 Identities=22% Similarity=0.334 Sum_probs=184.5
Q ss_pred EEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCCh----HHHhhh
Q 001580 667 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL----MDLRKI 742 (1050)
Q Consensus 667 ~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~----~~~r~~ 742 (1050)
.+.|+.|+|+++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...|+.
T Consensus 2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 467999999754 469999999999999999999999999999999999999999999999998866542 235677
Q ss_pred eEEEcCCcccccccHHHhcccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 001580 743 LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 822 (1050)
Q Consensus 743 i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~ 822 (1050)
++|+||++.+|+.|+++|+.+.....+++..++++..++.+.+..+|.|+++.++....+||||||||++||||++.+|+
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 160 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTN 160 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999999889999998654444555677788888888888899999998888889999999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHH--HHHHHc-CCcEEEEeecCchhhhhcCEEEEEeCCE
Q 001580 823 ILVLDEATAAVDVRTDALIQK--TIREEF-KSCTMLIIAHRLNTIIDCDRILLLDSGR 877 (1050)
Q Consensus 823 illLDEpts~LD~~~~~~i~~--~l~~~~-~~~tvi~vtH~~~~~~~~d~i~vl~~G~ 877 (1050)
+|||||||++||+.+...+.+ .++... .+.|+|++||+++.+..||++++|++|+
T Consensus 161 illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 161 IVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999999999999998887 455443 3689999999999987899999999874
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=377.63 Aligned_cols=205 Identities=25% Similarity=0.366 Sum_probs=172.0
Q ss_pred CceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCe----ecCCCChHHH---h-hheEEEcCCccc
Q 001580 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF----DIAKFGLMDL---R-KILGIIPQSPVL 752 (1050)
Q Consensus 681 ~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~----~i~~~~~~~~---r-~~i~~v~Q~~~l 752 (1050)
.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|. ++...+...+ | ++|+|+||++.+
T Consensus 38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l 117 (382)
T TIGR03415 38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL 117 (382)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence 5799999999999999999999999999999999999999999999996 5666665544 3 579999999999
Q ss_pred cc-ccHHHhcccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCEE
Q 001580 753 FS-GTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 824 (1050)
Q Consensus 753 f~-~tv~~nl~~~~---~~~~----~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~il 824 (1050)
|. .|+++|+.+.. .... +.+.++++.. |++........+||||||||++|||||+.+|+||
T Consensus 118 ~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~v-----------gL~~~~~~~~~~LSgGq~QRV~LARALa~~P~IL 186 (382)
T TIGR03415 118 MPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELV-----------GLAQWADKKPGELSGGMQQRVGLARAFAMDADIL 186 (382)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 97 59999997532 1111 2233344444 4444445555689999999999999999999999
Q ss_pred EEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCChHH
Q 001580 825 VLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 896 (1050)
Q Consensus 825 lLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~~ 896 (1050)
||||||++||+.++..+++.|.++.+ ++|+|+|||+++++.. ||||++|++|++++.|+++++..++...|.
T Consensus 187 LlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~ 261 (382)
T TIGR03415 187 LMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYV 261 (382)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHH
Confidence 99999999999999999999988653 7999999999999866 999999999999999999999876544443
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=352.40 Aligned_cols=205 Identities=29% Similarity=0.526 Sum_probs=179.8
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE-------------EeC
Q 001580 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRG 106 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~ 106 (1050)
+.+.++|++|+|+.. .++|+++||++++|++++|+|+||||||||+++|+|+++|++|.+.. .++
T Consensus 2 ~~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~ 79 (235)
T COG1122 2 RMIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQ 79 (235)
T ss_pred ceEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhc
Confidence 468999999999854 68999999999999999999999999999999999999999887632 345
Q ss_pred cEEEEecCC--CCCcccHHHHhccCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHH
Q 001580 107 TVAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 177 (1050)
Q Consensus 107 ~i~~v~Q~~--~l~~~TV~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~ 177 (1050)
+||||+|+| ++|..||.|.+.||.. ... .+...+++.+++.+..+..| .+|||||||||+
T Consensus 80 ~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRva 148 (235)
T COG1122 80 KVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVA 148 (235)
T ss_pred ceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHH
Confidence 699999999 6789999999999943 222 34556778888887766655 589999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccC-CcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhhhc
Q 001580 178 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 255 (1050)
Q Consensus 178 LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~-g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 255 (1050)
||.+|+.+|++||||||||+|||..++++.+.+.++... |+|+|++|||++++.. |||+++|++|+++.+|++.++.+
T Consensus 149 IA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 149 IAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred hhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 999999999999999999999999999999988887665 7899999999999876 89999999999999999888776
Q ss_pred Ch
Q 001580 256 NG 257 (1050)
Q Consensus 256 ~~ 257 (1050)
+.
T Consensus 229 ~~ 230 (235)
T COG1122 229 DA 230 (235)
T ss_pred hh
Confidence 53
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=365.35 Aligned_cols=204 Identities=30% Similarity=0.458 Sum_probs=179.5
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE----------EeCcEE
Q 001580 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVA 109 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~ 109 (1050)
..|+++|+++.|++. .+++++||+|++||+++|+|||||||||||++|+|+.+|++|.+.. .++.||
T Consensus 2 ~~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~ia 78 (338)
T COG3839 2 AELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIA 78 (338)
T ss_pred cEEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEE
Confidence 358999999999742 2999999999999999999999999999999999999999987653 234699
Q ss_pred EEecCCCCC-cccHHHHhccCCCCC-------HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHH
Q 001580 110 YVPQVSWIF-NATVRDNILFGSAFE-------PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 181 (1050)
Q Consensus 110 ~v~Q~~~l~-~~TV~eni~~g~~~~-------~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAra 181 (1050)
+|+|+..|+ ..||+|||.|+.... ..++..+.+..++.+.++..| .+||||||||||||||
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaRA 147 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALARA 147 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHHH
Confidence 999999997 679999999995432 356677788889999888877 4899999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhhhcCh
Q 001580 182 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNG 257 (1050)
Q Consensus 182 L~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 257 (1050)
|+++|+++|||||+|+||++.+..+...+.+..+ .|.|+|+||||..++.. +|||++|++|+|.+.|++.++..++
T Consensus 148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P 225 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225 (338)
T ss_pred HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence 9999999999999999999999999888877543 48999999999998775 7999999999999999999987653
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-41 Score=435.51 Aligned_cols=224 Identities=25% Similarity=0.384 Sum_probs=191.4
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheE
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 744 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 744 (1050)
.|+++|+++.|+++.+++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .....|+.+|
T Consensus 928 ~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~IG 1006 (2272)
T TIGR01257 928 GVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLG 1006 (2272)
T ss_pred eEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcEE
Confidence 599999999996333479999999999999999999999999999999999999999999999999965 4556788999
Q ss_pred EEcCCcccccc-cHHHhcccCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccC
Q 001580 745 IIPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 820 (1050)
Q Consensus 745 ~v~Q~~~lf~~-tv~~nl~~~~~---~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~ 820 (1050)
||||++.+|.. |++|||.++.. ....+.. ..+.+.++. .|++........+|||||||||+|||||+.+
T Consensus 1007 ~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~-----~~v~~lL~~--vgL~~~~~~~~~~LSGGqKQRLsLArALi~~ 1079 (2272)
T TIGR01257 1007 MCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQ-----LEMEAMLED--TGLHHKRNEEAQDLSGGMQRKLSVAIAFVGD 1079 (2272)
T ss_pred EEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHH--cCCchhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 99999999875 99999975421 1111111 112334444 3555566677789999999999999999999
Q ss_pred CCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCChHH
Q 001580 821 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 896 (1050)
Q Consensus 821 p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~~ 896 (1050)
|+||||||||+|||+.+++.+++.|++..+|+|||++||++++++. ||||++|++|++++.|++++|+++.+..|.
T Consensus 1080 PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~g~gy~ 1156 (2272)
T TIGR01257 1080 AKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGFY 1156 (2272)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhcCCcEE
Confidence 9999999999999999999999999998778999999999999987 999999999999999999999887665443
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-41 Score=335.31 Aligned_cols=208 Identities=25% Similarity=0.392 Sum_probs=170.8
Q ss_pred CCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCC-----Cee-----------
Q 001580 39 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD-----ASA----------- 102 (1050)
Q Consensus 39 ~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g-----~~~----------- 102 (1050)
.+.++++|++++|+ ++.+|+|||++|++++++|++||+||||||||+++........+ .+.
T Consensus 5 ~~~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~ 81 (253)
T COG1117 5 IPAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKV 81 (253)
T ss_pred cceeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCC
Confidence 35689999999997 46799999999999999999999999999999999998766542 211
Q ss_pred ---EEeCcEEEEecCCCCCcccHHHHhccCCCC---CH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHH
Q 001580 103 ---VIRGTVAYVPQVSWIFNATVRDNILFGSAF---EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 172 (1050)
Q Consensus 103 ---~~~~~i~~v~Q~~~l~~~TV~eni~~g~~~---~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGq 172 (1050)
.+|++||+|+|.|.-|..||+|||.+|... .. +.++..++.+.|-+.... .+.+.+..|||||
T Consensus 82 d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQ 154 (253)
T COG1117 82 DVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQ 154 (253)
T ss_pred CHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhH
Confidence 135579999999999999999999998432 11 223444444444332211 2445677899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhhc-CEEEEEcCCeEeeccChh
Q 001580 173 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFE 251 (1050)
Q Consensus 173 rqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~~-d~i~~l~~G~i~~~g~~~ 251 (1050)
+||++|||||+-+|+|||||||||+|||.+...|.+.+..++ +.-|+|+|||.+..+.++ |+++.+..|++++.|+.+
T Consensus 155 QQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~ 233 (253)
T COG1117 155 QQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTD 233 (253)
T ss_pred HHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHH
Confidence 999999999999999999999999999999999988666554 668999999999998875 999999999999999999
Q ss_pred hhhcCh
Q 001580 252 DLSNNG 257 (1050)
Q Consensus 252 ~l~~~~ 257 (1050)
++..++
T Consensus 234 ~iF~~P 239 (253)
T COG1117 234 KIFTNP 239 (253)
T ss_pred hhhcCc
Confidence 988764
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=354.29 Aligned_cols=206 Identities=22% Similarity=0.323 Sum_probs=172.3
Q ss_pred cEEEEEEEEEeCCCC--CCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHH---H
Q 001580 665 SIKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---L 739 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~--~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~---~ 739 (1050)
.++++|++++|++.. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...++.. .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 489999999996432 25999999999999999999999999999999999999999999999999998776543 2
Q ss_pred -hhheEEEcCCcccccc-cHHHhcccC---CCCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001580 740 -RKILGIIPQSPVLFSG-TVRFNLDPF---SEHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 810 (1050)
Q Consensus 740 -r~~i~~v~Q~~~lf~~-tv~~nl~~~---~~~~----~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qr 810 (1050)
++.++|+||++.+|.. |+.+|+.+. .... .+++.++++..++. .........||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLG-----------KRLDHLPAQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-----------hHhhCChhhCCHHHHHH
Confidence 3579999999998875 999998642 1111 12233444444443 33444456899999999
Q ss_pred HHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-C-CcEEEEeecCchhhhhcCEEEEEeCCEEEEe
Q 001580 811 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-K-SCTMLIIAHRLNTIIDCDRILLLDSGRVLEY 881 (1050)
Q Consensus 811 l~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~ 881 (1050)
++|||||+.+|++|||||||++||+.+.+.+.+.|+++. + ++|||++||+++++..||++++|++|++++.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999998864 2 7899999999999877999999999999763
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=352.69 Aligned_cols=204 Identities=25% Similarity=0.466 Sum_probs=171.1
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
++++|+++.|++ +++++|+||+|.+||++||+||||||||||+++|+|+++|++|+|.++|.++.. ..++.++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGY 74 (210)
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEE
Confidence 468999999964 369999999999999999999999999999999999999999999999988753 46778999
Q ss_pred EcCCcccccc-cHHHhcccCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 001580 746 IPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 821 (1050)
Q Consensus 746 v~Q~~~lf~~-tv~~nl~~~~~---~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p 821 (1050)
+||++.+|.. |+++|+.+... ....+.. ..+.++++.+ |++........+||||||||++||||++.+|
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 147 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEAR-----RRIDEWLERL--ELSEYANKRVEELSKGNQQKVQFIAAVIHDP 147 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHcCCChHHHH-----HHHHHHHHHc--CChHHHhCcHhhCCHHHHHHHHHHHHHhcCC
Confidence 9999998875 99999864311 1111111 1233444443 5555556667789999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001580 822 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 882 (1050)
Q Consensus 822 ~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 882 (1050)
++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 148 ~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 148 ELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 9999999999999999999999998864 47899999999999876 9999999999998754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=352.96 Aligned_cols=208 Identities=26% Similarity=0.381 Sum_probs=176.7
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
++++||+++|+.. ..|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 2 l~~~~l~~~~~~~----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHHL----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSM 75 (232)
T ss_pred eEEEEEEEEECCc----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEE
Confidence 7899999999632 239999999999999999999999999999999999999999999999876544 3567999
Q ss_pred EcCCcccccc-cHHHhcccCC-CC------CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHH
Q 001580 746 IPQSPVLFSG-TVRFNLDPFS-EH------SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 817 (1050)
Q Consensus 746 v~Q~~~lf~~-tv~~nl~~~~-~~------~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAral 817 (1050)
+||++.+|.. |+.+|+.+.. .. .++++.++++..++.+ .+......||||||||++||||+
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~laral 144 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIED-----------LLARLPGQLSGGQRQRVALARCL 144 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHH-----------HHhCCcccCCHHHHHHHHHHHHH
Confidence 9999998875 9999997421 11 1223444555544444 34444568999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001580 818 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890 (1050)
Q Consensus 818 l~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 890 (1050)
+++|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++++.. ||++++|++|++++.|+++++...
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999998643 7899999999999876 999999999999999999998753
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=353.22 Aligned_cols=204 Identities=26% Similarity=0.441 Sum_probs=170.6
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCC--CChHHHhhhe
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK--FGLMDLRKIL 743 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~--~~~~~~r~~i 743 (1050)
++++||+++|++. ++++++||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.+
T Consensus 1 l~~~~l~~~~~~~--~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGDF--HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECCe--EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 4689999999653 69999999999999999999999999999999999999999999999998853 3445678899
Q ss_pred EEEcCCccccc-ccHHHhcccCC----CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHc
Q 001580 744 GIIPQSPVLFS-GTVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 818 (1050)
Q Consensus 744 ~~v~Q~~~lf~-~tv~~nl~~~~----~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall 818 (1050)
+|+||++.+|. .|+++|+.+.. .....+.. ..+.+.++.+ |++........+||||||||++||||++
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~ 151 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAE-----ERALELLEKV--GLADKADAYPAQLSGGQQQRVAIARALA 151 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHH-----HHHHHHHHHc--CCHhHhhhCccccCHHHHHHHHHHHHHh
Confidence 99999999886 59999996531 11111111 1123334442 5555566667889999999999999999
Q ss_pred cCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEE
Q 001580 819 RRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRV 878 (1050)
Q Consensus 819 ~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i 878 (1050)
.+|++|||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++
T Consensus 152 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 152 MNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999875 47899999999999976 999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=361.53 Aligned_cols=219 Identities=26% Similarity=0.439 Sum_probs=181.9
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhcccc-----CCccEEEECCeecCCC--Ch
Q 001580 664 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAKF--GL 736 (1050)
Q Consensus 664 ~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~-----p~~G~i~~~g~~i~~~--~~ 736 (1050)
..|+++|++++|+.. ++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++... ++
T Consensus 38 ~~l~i~~l~~~~~~~--~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 38 TVIEARDLNVFYGDE--QALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred ceEEEEEEEEEECCE--eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 358999999999643 69999999999999999999999999999999999997 6899999999998643 44
Q ss_pred HHHhhheEEEcCCcccccccHHHhcccCCC---CC---HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001580 737 MDLRKILGIIPQSPVLFSGTVRFNLDPFSE---HS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 810 (1050)
Q Consensus 737 ~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~---~~---~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qr 810 (1050)
..+++.++|+||++.+|..|+.+|+.+... .. ++++.++++..++...+ .......+.+||||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LSgGe~qr 188 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEV-------KDQLDSSGLDLSGGQQQR 188 (285)
T ss_pred HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchh-------HHHHhCCcccCCHHHHHH
Confidence 567889999999999888899999964211 11 22233344443332111 223456677899999999
Q ss_pred HHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEE-EEeCCEEEEecChhHHh
Q 001580 811 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRIL-LLDSGRVLEYDTPEELL 888 (1050)
Q Consensus 811 l~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~-vl~~G~i~~~g~~~el~ 888 (1050)
++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. |||++ +|++|++++.|+++++.
T Consensus 189 v~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 189 LCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998767899999999999877 99976 56999999999999987
Q ss_pred hcC
Q 001580 889 SNE 891 (1050)
Q Consensus 889 ~~~ 891 (1050)
++.
T Consensus 269 ~~~ 271 (285)
T PRK14254 269 ENP 271 (285)
T ss_pred hCc
Confidence 543
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-40 Score=359.68 Aligned_cols=218 Identities=26% Similarity=0.397 Sum_probs=183.0
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccC-----CccEEEECCeecCC--CChH
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FGLM 737 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p-----~~G~i~~~g~~i~~--~~~~ 737 (1050)
.++++|++++|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++.. ....
T Consensus 7 ~l~~~~l~~~~~~~--~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (259)
T PRK14260 7 AIKVKDLSFYYNTS--KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININ 84 (259)
T ss_pred eEEEEEEEEEECCe--EeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence 48999999999643 699999999999999999999999999999999999985 48999999998864 3345
Q ss_pred HHhhheEEEcCCcccccccHHHhcccCC----CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001580 738 DLRKILGIIPQSPVLFSGTVRFNLDPFS----EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 809 (1050)
Q Consensus 738 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~----~~~~----~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~q 809 (1050)
.+++.++|+||++.+|..|+++|+.+.. ...+ +.+.++++.+++.+.+ .......+..|||||||
T Consensus 85 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~q 157 (259)
T PRK14260 85 RLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEV-------KDKLNKSALGLSGGQQQ 157 (259)
T ss_pred hhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh-------hhHhcCCcccCCHHHHH
Confidence 6788899999999999899999996421 1111 2233444444443222 22345566789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEe-----CCEEEEecC
Q 001580 810 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLD-----SGRVLEYDT 883 (1050)
Q Consensus 810 rl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~-----~G~i~~~g~ 883 (1050)
|++|||||+++|++|||||||++||+.+...+++.|+++.+++|+|++||+++++.. ||++++|+ +|++++.|+
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~ 237 (259)
T PRK14260 158 RLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGV 237 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCC
Confidence 999999999999999999999999999999999999997777999999999999877 99999998 599999999
Q ss_pred hhHHhhcC
Q 001580 884 PEELLSNE 891 (1050)
Q Consensus 884 ~~el~~~~ 891 (1050)
++++.+.+
T Consensus 238 ~~~~~~~~ 245 (259)
T PRK14260 238 TTQIFSNP 245 (259)
T ss_pred HHHHhcCC
Confidence 99987654
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=353.77 Aligned_cols=210 Identities=24% Similarity=0.336 Sum_probs=178.2
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheE
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 744 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 744 (1050)
.|+++|+++.|++. ++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++..+++.++
T Consensus 7 ~i~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGDA--KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCCc--eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 48999999999643 6999999999999999999999999999999999999999999999999998888777888999
Q ss_pred EEcCCcccccccHHHhcccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHHHHHHHccC
Q 001580 745 IIPQSPVLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLSLSRALLRR 820 (1050)
Q Consensus 745 ~v~Q~~~lf~~tv~~nl~~~~---~~~~~~~~~~l~~~~~~~~i~~~p~gl~-t~v~~~~~~LSgGq~qrl~lArall~~ 820 (1050)
|+||++.+|..|+++|+.+.. .....+ ..+.++++.+ |+. +.....+.+||||||||++|||||+++
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~-------~~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~laral~~~ 155 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDP-------AIFLDDLERF--ALPDTILTKNIAELSGGEKQRISLIRNLQFM 155 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHH-------HHHHHHHHHc--CCChHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999999889999996421 111100 1122344443 443 445667789999999999999999999
Q ss_pred CCEEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhhcCEEEEEe-CCEEEEecChh
Q 001580 821 SKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLD-SGRVLEYDTPE 885 (1050)
Q Consensus 821 p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~vl~-~G~i~~~g~~~ 885 (1050)
|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++++..||++++|+ ++..+++|+|+
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 156 PKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 99999999999999999999999999864 3789999999999997899999995 66667778765
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-40 Score=359.28 Aligned_cols=217 Identities=26% Similarity=0.453 Sum_probs=180.4
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccC-----CccEEEECCeecCC--CChH
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FGLM 737 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p-----~~G~i~~~g~~i~~--~~~~ 737 (1050)
.++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++.. .+..
T Consensus 4 ~l~i~~v~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYGSF--HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEECCE--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 38999999999643 699999999999999999999999999999999999974 69999999999853 3455
Q ss_pred HHhhheEEEcCCcccccc-cHHHhcccCC---C-CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHH
Q 001580 738 DLRKILGIIPQSPVLFSG-TVRFNLDPFS---E-HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 808 (1050)
Q Consensus 738 ~~r~~i~~v~Q~~~lf~~-tv~~nl~~~~---~-~~~----~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~ 808 (1050)
.+|+.++|+||++.+|.. |+++|+.+.. . ... +.+.++++..++.+. +.........+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~G~~ 154 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNE-------VKDRLDKPGGGLSGGQQ 154 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchh-------hhhHhhCCcccCCHHHH
Confidence 678889999999998874 9999986421 1 111 122333333333211 12344566678999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEe------CCEEEEe
Q 001580 809 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLD------SGRVLEY 881 (1050)
Q Consensus 809 qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~------~G~i~~~ 881 (1050)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++++.. ||+|++|+ +|+|++.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 9999999999999999999999999999999999999987667899999999999866 99999997 7999999
Q ss_pred cChhHHhhc
Q 001580 882 DTPEELLSN 890 (1050)
Q Consensus 882 g~~~el~~~ 890 (1050)
|+++++...
T Consensus 235 ~~~~~~~~~ 243 (258)
T PRK14241 235 DDTEKIFSN 243 (258)
T ss_pred CCHHHHHhC
Confidence 999998764
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=360.55 Aligned_cols=257 Identities=31% Similarity=0.524 Sum_probs=222.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhh-cccCCC-CCCCCC-CCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCc
Q 001580 6 WQVVNANVSLKRMEEFLLAEE-KILLPN-PPLTSG-LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEG 82 (1050)
Q Consensus 6 ~~~~~a~~s~~Ri~~fl~~~e-~~~~~~-~~~~~~-~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsG 82 (1050)
..+-++..-+++.-+.+..+- ..+.|+ |++.+. .-.+.|.|++|.|+ +.+++|+++||.+++|+.+++||++|+|
T Consensus 224 rei~q~ltdme~mfdLl~~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~--~~r~iL~~isf~i~~g~tvAiVg~SG~g 301 (497)
T COG5265 224 REIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYD--PRRPILNGISFTIPLGKTVAIVGESGAG 301 (497)
T ss_pred HHHHHhhhhHHHHHHhhccchhhccCCCCccccccccceEEEEEEEeecc--ccchhhcCccccccCccEEEEEeCCCCc
Confidence 445566666666666666553 223333 233321 22489999999997 4689999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCeeE------------EeCcEEEEecCCCCCcccHHHHhccCCCC-CHHHHHHHHHHhCcHHH
Q 001580 83 KTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFGSAF-EPARYEKAIDVTSLQHD 149 (1050)
Q Consensus 83 KSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~TV~eni~~g~~~-~~~~~~~~~~~~~l~~~ 149 (1050)
|||++++|..++++.+|.+.. .++.||+|||+..||+.|+..||.+|.+. ..++...+.+.+++...
T Consensus 302 KsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~f 381 (497)
T COG5265 302 KSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDF 381 (497)
T ss_pred HHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHH
Confidence 999999999999999987654 23459999999999999999999999753 45677788999999999
Q ss_pred HhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcch
Q 001580 150 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHF 229 (1050)
Q Consensus 150 ~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~ 229 (1050)
+..+|.|++|.|||+|-.||||+||||++||+++.+|+||+|||.||+||.++++.|...+.+ ..+|+|.++|.|+++.
T Consensus 382 i~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~-~~~~rttlviahrlst 460 (497)
T COG5265 382 IQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALRE-VSAGRTTLVIAHRLST 460 (497)
T ss_pred HHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHH-HhCCCeEEEEeehhhh
Confidence 999999999999999999999999999999999999999999999999999999999887654 3478999999999999
Q ss_pred hhhcCEEEEEcCCeEeeccChhhhhcChHHHHHHHH
Q 001580 230 LSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 265 (1050)
Q Consensus 230 l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~~ 265 (1050)
+-.||.|+||++|+|+|.|++++++..++.|+.++.
T Consensus 461 i~~adeiivl~~g~i~erg~h~~ll~~~g~ya~mw~ 496 (497)
T COG5265 461 IIDADEIIVLDNGRIVERGTHEELLAAGGLYAEMWR 496 (497)
T ss_pred ccCCceEEEeeCCEEEecCcHHHHHHcCChHHHHhc
Confidence 999999999999999999999999999999998874
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=355.68 Aligned_cols=210 Identities=27% Similarity=0.406 Sum_probs=178.8
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
|+++|++++|+.. ++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 l~~~~l~~~~~~~--~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGGF--VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCCe--eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEE
Confidence 4689999999753 69999999999999999999999999999999999999999999999999976554 3678999
Q ss_pred EcCCcccccc-cHHHhcccCCC---CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHH
Q 001580 746 IPQSPVLFSG-TVRFNLDPFSE---HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 817 (1050)
Q Consensus 746 v~Q~~~lf~~-tv~~nl~~~~~---~~----~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAral 817 (1050)
+||++.+|.+ |+++|+.+... .. ++++.++++.. |++.........||||||||++|||||
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~lS~G~~qrl~laral 145 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLV-----------QLEGYANRKPSQLSGGQQQRVAIARAL 145 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 9999999865 99999864211 11 12233333333 444445555578999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001580 818 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890 (1050)
Q Consensus 818 l~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 890 (1050)
+.+|++|||||||++||+.+++.+++.|+++.+ ++|+|++||+++++.. ||++++|++|++++.|+++++...
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 999999999999999999999999999998753 7999999999999876 999999999999999999988754
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-40 Score=369.50 Aligned_cols=226 Identities=25% Similarity=0.408 Sum_probs=184.0
Q ss_pred cEEEEEEEEEeCC--CCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCC---ccEEEECCeecCCCChHHH
Q 001580 665 SIKFEDVVLRYRP--ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE---RGRILIDGFDIAKFGLMDL 739 (1050)
Q Consensus 665 ~i~~~~v~~~y~~--~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~ 739 (1050)
.++++|++++|+. +..++|+||||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|.++..++..++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 4899999999953 2236999999999999999999999999999999999999996 9999999999998887665
Q ss_pred h----hheEEEcCCc--cccc-ccHHHhcc----cCCCCCHHH----HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCC
Q 001580 740 R----KILGIIPQSP--VLFS-GTVRFNLD----PFSEHSDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFS 804 (1050)
Q Consensus 740 r----~~i~~v~Q~~--~lf~-~tv~~nl~----~~~~~~~~~----~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LS 804 (1050)
+ +.|+||||++ .++. .|+.+|+. .....+..+ +.+.++..++ +.+. ..++..+.+||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL-------~~~~-~~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM-------PEAR-KRMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CChH-HHhcCCcccCC
Confidence 3 4799999998 4554 37777663 221122222 2222232222 2211 23566778999
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEe
Q 001580 805 VGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEY 881 (1050)
Q Consensus 805 gGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~ 881 (1050)
||||||++|||||+.+|++||+||||++||+.++..+.+.|+++.+ +.|+|+||||++.+.. ||||+||++|+|++.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999988754 7899999999999976 999999999999999
Q ss_pred cChhHHhhcCCChHHHH
Q 001580 882 DTPEELLSNEGSSFSKM 898 (1050)
Q Consensus 882 g~~~el~~~~~~~~~~~ 898 (1050)
|+++++.+.+...|.+.
T Consensus 244 g~~~~i~~~p~~pyt~~ 260 (330)
T PRK09473 244 GNARDVFYQPSHPYSIG 260 (330)
T ss_pred CCHHHHHhCCCCHHHHH
Confidence 99999998765556543
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-40 Score=354.08 Aligned_cols=214 Identities=25% Similarity=0.446 Sum_probs=180.1
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
++++|++++|++. ++|+|+||++.+||++||+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 i~i~~l~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFGSF--QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGF 76 (237)
T ss_pred CEEEEEEEEECCe--eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEE
Confidence 4689999999753 69999999999999999999999999999999999999999999999999876543 4678999
Q ss_pred EcCCcccccc-cHHHhcccCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 001580 746 IPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 821 (1050)
Q Consensus 746 v~Q~~~lf~~-tv~~nl~~~~~---~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p 821 (1050)
+||++.+|.. |+++|+.+... ...... ...+.+.++.+ ++.........+|||||+||++|||||+++|
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~lS~G~~qrl~laral~~~p 149 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKI-----KARVEELLELV--QLEGLGDRYPNQLSGGQRQRVALARALAVEP 149 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhcCCCHHHH-----HHHHHHHHHHc--CCHhHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 9999999975 99999974321 111111 11223444443 3334445556789999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001580 822 KILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890 (1050)
Q Consensus 822 ~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 890 (1050)
+++||||||++||+.+++.+++.|++..+ ++|+|++||+++++.. ||++++|++|++++.|++++++..
T Consensus 150 ~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 150 QVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 99999999999999999999999998654 7899999999999876 999999999999999999999754
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=357.06 Aligned_cols=218 Identities=23% Similarity=0.409 Sum_probs=184.2
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhcccc-----CCccEEEECCeecCCC--ChHH
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAKF--GLMD 738 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~-----p~~G~i~~~g~~i~~~--~~~~ 738 (1050)
++++||++.|++ .++|+|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.++|.++... +...
T Consensus 4 l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 81 (250)
T PRK14266 4 IEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE 81 (250)
T ss_pred EEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence 789999999964 369999999999999999999999999999999999874 4899999999998653 3456
Q ss_pred HhhheEEEcCCcccccccHHHhcccCC---CC-CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001580 739 LRKILGIIPQSPVLFSGTVRFNLDPFS---EH-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 810 (1050)
Q Consensus 739 ~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~-~~----~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qr 810 (1050)
+++.++|+||++.+|..|+.+|+.+.. .. .. +.+.++++.+++.+.+. ...+..+..||||||||
T Consensus 82 ~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~qr 154 (250)
T PRK14266 82 LRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVK-------DKLDKSALGLSGGQQQR 154 (250)
T ss_pred HhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHH-------HHHhCCcccCCHHHHHH
Confidence 788999999999999889999997421 11 11 22344455555543332 22455667899999999
Q ss_pred HHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001580 811 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889 (1050)
Q Consensus 811 l~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 889 (1050)
++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|++||+++++.. ||++++|++|++++.|+++++..
T Consensus 155 v~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14266 155 LCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFI 234 (250)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999998778999999999999877 99999999999999999999976
Q ss_pred cCC
Q 001580 890 NEG 892 (1050)
Q Consensus 890 ~~~ 892 (1050)
.+.
T Consensus 235 ~~~ 237 (250)
T PRK14266 235 NPK 237 (250)
T ss_pred CCC
Confidence 543
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=356.58 Aligned_cols=218 Identities=24% Similarity=0.406 Sum_probs=181.1
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCee-----cCCCChHHH
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFD-----IAKFGLMDL 739 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~-----i~~~~~~~~ 739 (1050)
.++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+ +...+...+
T Consensus 6 ~l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 6 LLSVRGLTKLYGPR--KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred eEEEeeeEEEcCCc--eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 48999999999643 69999999999999999999999999999999999999999999999998 776665442
Q ss_pred ----hhheEEEcCCcc--ccc-ccHHHhccc----CCCCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhH
Q 001580 740 ----RKILGIIPQSPV--LFS-GTVRFNLDP----FSEHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQ 807 (1050)
Q Consensus 740 ----r~~i~~v~Q~~~--lf~-~tv~~nl~~----~~~~~~~~~~~~l~~~~~~~~i~~~p~gl~-t~v~~~~~~LSgGq 807 (1050)
++.++|+||++. ++. .|+.+|+.. +......+.. ..+.++++.+ |++ +..+..+.+|||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LS~Gq 156 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIR-----ATAGDWLERV--EIDAARIDDLPTTFSGGM 156 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHH-----HHHHHHHHHc--CCChhHHhCCCccCCHHH
Confidence 557999999984 333 378887742 1111111111 1234556665 343 45677888999999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecCh
Q 001580 808 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 884 (1050)
Q Consensus 808 ~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~ 884 (1050)
|||++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ +.|+|+|||+++++.. ||+|++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~ 236 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLT 236 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999988643 7899999999999986 999999999999999999
Q ss_pred hHHhhcC
Q 001580 885 EELLSNE 891 (1050)
Q Consensus 885 ~el~~~~ 891 (1050)
+++....
T Consensus 237 ~~~~~~~ 243 (258)
T PRK11701 237 DQVLDDP 243 (258)
T ss_pred HHHhcCC
Confidence 9987654
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=358.62 Aligned_cols=220 Identities=26% Similarity=0.405 Sum_probs=183.3
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccC-----CccEEEECCeecCCCC-hHH
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKFG-LMD 738 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p-----~~G~i~~~g~~i~~~~-~~~ 738 (1050)
.++++||+++|+.. ++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+ ...
T Consensus 21 ~l~i~nl~~~~~~~--~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 21 AMAAVNLTLGFAGK--TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred EEEEeeEEEEECCE--EEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 48999999999743 699999999999999999999999999999999999986 6999999999987653 346
Q ss_pred HhhheEEEcCCcccccccHHHhcccCC---C-CCHHHHHHHHHHhcHHHHHHHc--cCCcchhhhcCCCCCChhHHHHHH
Q 001580 739 LRKILGIIPQSPVLFSGTVRFNLDPFS---E-HSDADLWEALERAHLKDAIRRN--SLGLDAQVSEAGENFSVGQRQLLS 812 (1050)
Q Consensus 739 ~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~-~~~~~~~~~l~~~~~~~~i~~~--p~gl~t~v~~~~~~LSgGq~qrl~ 812 (1050)
+|+.++|+||++.+|..|+++|+.+.. . .+..+..+. +.+.++.+ ...+.+.....+.+||||||||++
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~ 173 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGV-----AQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLC 173 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHH-----HHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHH
Confidence 788999999999999899999997431 1 122222211 11222222 111223455667889999999999
Q ss_pred HHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 001580 813 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 891 (1050)
Q Consensus 813 lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~ 891 (1050)
|||||+.+|+||||||||++||+.+++.+.+.|+++.+++|||+|||+++++.. |||+++|++|++++.|+++++.+.+
T Consensus 174 LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 253 (276)
T PRK14271 174 LARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSP 253 (276)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 999999999999999999999999999999999987667899999999999876 9999999999999999999997654
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-40 Score=370.25 Aligned_cols=224 Identities=21% Similarity=0.359 Sum_probs=181.3
Q ss_pred EEEEEEEEEeCC--CCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhcccc----CCccEEEECCeecCCCChHHH
Q 001580 666 IKFEDVVLRYRP--ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE----LERGRILIDGFDIAKFGLMDL 739 (1050)
Q Consensus 666 i~~~~v~~~y~~--~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~----p~~G~i~~~g~~i~~~~~~~~ 739 (1050)
++++|++++|+. +...+|+||||+|.+||++||+|+||||||||+++|+|+++ |++|+|.++|+++.+.+...+
T Consensus 4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (330)
T PRK15093 4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 899999999952 22369999999999999999999999999999999999986 589999999999988877654
Q ss_pred h----hheEEEcCCcc--ccc-ccHHHhcccC------CC--CC-----HHHHHHHHHHhcHHHHHHHccCCcchhhhcC
Q 001580 740 R----KILGIIPQSPV--LFS-GTVRFNLDPF------SE--HS-----DADLWEALERAHLKDAIRRNSLGLDAQVSEA 799 (1050)
Q Consensus 740 r----~~i~~v~Q~~~--lf~-~tv~~nl~~~------~~--~~-----~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~ 799 (1050)
+ +.|+||||++. ++. .||.+|+... .. .. .+++.++++..++.+. .......
T Consensus 84 ~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~--------~~~~~~~ 155 (330)
T PRK15093 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDH--------KDAMRSF 155 (330)
T ss_pred HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCCh--------HHHHhCC
Confidence 3 46999999996 333 3888887421 00 00 1223333444333211 1223455
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCC
Q 001580 800 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSG 876 (1050)
Q Consensus 800 ~~~LSgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G 876 (1050)
+.+|||||||||+|||||+.+|+||||||||++||+.++..+.+.|+++.+ +.|+|+||||++.+.. ||||++|++|
T Consensus 156 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G 235 (330)
T PRK15093 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCG 235 (330)
T ss_pred chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 678999999999999999999999999999999999999999999998753 7899999999999977 9999999999
Q ss_pred EEEEecChhHHhhcCCChHHH
Q 001580 877 RVLEYDTPEELLSNEGSSFSK 897 (1050)
Q Consensus 877 ~i~~~g~~~el~~~~~~~~~~ 897 (1050)
+|++.|+++++..++...|.+
T Consensus 236 ~ive~g~~~~i~~~p~~~y~~ 256 (330)
T PRK15093 236 QTVETAPSKELVTTPHHPYTQ 256 (330)
T ss_pred EEEEECCHHHHHhCCCCHHHH
Confidence 999999999998765545544
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=358.73 Aligned_cols=218 Identities=23% Similarity=0.410 Sum_probs=182.7
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccC-----CccEEEECCeecCC--CChH
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FGLM 737 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p-----~~G~i~~~g~~i~~--~~~~ 737 (1050)
.|+++|++++|+.. ++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ....
T Consensus 20 ~l~~~nl~~~~~~~--~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~ 97 (274)
T PRK14265 20 VFEVEGVKVFYGGF--LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV 97 (274)
T ss_pred eEEEeeEEEEeCCe--EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhH
Confidence 59999999999743 699999999999999999999999999999999999864 68999999999864 2334
Q ss_pred HHhhheEEEcCCcccccccHHHhcccCCC---C---CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 001580 738 DLRKILGIIPQSPVLFSGTVRFNLDPFSE---H---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 811 (1050)
Q Consensus 738 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~---~---~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl 811 (1050)
.+|+.|+|+||++.+|..|+.+|+.+... . .++.+.++++.+++...+ .......+..||||||||+
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~qrv 170 (274)
T PRK14265 98 KLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEV-------KDKLKEKGTALSGGQQQRL 170 (274)
T ss_pred HHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhh-------HHHhcCCcccCCHHHHHHH
Confidence 56889999999999998899999975321 1 122233344444443222 2234556678999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEe---------CCEEEEe
Q 001580 812 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLD---------SGRVLEY 881 (1050)
Q Consensus 812 ~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~---------~G~i~~~ 881 (1050)
+|||||+.+|++|||||||++||+.+...+.+.|+++.+++|||++||+++++.. ||++++|+ +|++++.
T Consensus 171 ~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~ 250 (274)
T PRK14265 171 CIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEF 250 (274)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 9999999999999999999999999999999999998778999999999999976 99999998 8999999
Q ss_pred cChhHHhhcC
Q 001580 882 DTPEELLSNE 891 (1050)
Q Consensus 882 g~~~el~~~~ 891 (1050)
|+++++...+
T Consensus 251 g~~~~~~~~~ 260 (274)
T PRK14265 251 SPTEQMFGSP 260 (274)
T ss_pred CCHHHHHhCC
Confidence 9999997654
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=359.72 Aligned_cols=217 Identities=23% Similarity=0.360 Sum_probs=178.1
Q ss_pred cEEEEEEEEEeCCC-------CCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChH
Q 001580 665 SIKFEDVVLRYRPE-------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM 737 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~-------~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~ 737 (1050)
.|+++||+++|+.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 38999999999521 23699999999999999999999999999999999999999999999999998755555
Q ss_pred HHhhheEEEcCCcc--cccc-cHHHhcccC----CCCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChh
Q 001580 738 DLRKILGIIPQSPV--LFSG-TVRFNLDPF----SEHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVG 806 (1050)
Q Consensus 738 ~~r~~i~~v~Q~~~--lf~~-tv~~nl~~~----~~~~----~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgG 806 (1050)
..++.++|+||++. ++.. |+.+|+.+. .... .+++.++++.+++. .........+||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LS~G 153 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLL----------PDHASYYPHMLAPG 153 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCC----------hHHHhcCchhcCHH
Confidence 55678999999985 4443 888887531 1111 12233444444431 12223345689999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecC
Q 001580 807 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 883 (1050)
Q Consensus 807 q~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~ 883 (1050)
||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. .+.|||++||+++.+.. ||++++|++|++++.|+
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCC
Confidence 9999999999999999999999999999999999999999875 37899999999999987 99999999999999999
Q ss_pred hhHHhhcC
Q 001580 884 PEELLSNE 891 (1050)
Q Consensus 884 ~~el~~~~ 891 (1050)
++++...+
T Consensus 234 ~~~~~~~~ 241 (267)
T PRK15112 234 TADVLASP 241 (267)
T ss_pred HHHHhcCC
Confidence 99998654
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=358.73 Aligned_cols=220 Identities=22% Similarity=0.349 Sum_probs=184.5
Q ss_pred CccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccC-----CccEEEECCeecC----C
Q 001580 663 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIA----K 733 (1050)
Q Consensus 663 ~~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p-----~~G~i~~~g~~i~----~ 733 (1050)
.+.|+++|++++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++. .
T Consensus 14 ~~~l~~~~l~~~~~~~--~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~ 91 (265)
T PRK14252 14 QQKSEVNKLNFYYGGY--QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91 (265)
T ss_pred CceEEEEEEEEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccc
Confidence 4569999999999743 699999999999999999999999999999999999985 7999999998774 2
Q ss_pred CChHHHhhheEEEcCCcccccccHHHhcccCC---CC-----CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCCh
Q 001580 734 FGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSV 805 (1050)
Q Consensus 734 ~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~-----~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSg 805 (1050)
.....+++.++|+||++.+|..|+++|+.+.. .. .++++.++++.+++.+ ++.+..+.....|||
T Consensus 92 ~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~ 164 (265)
T PRK14252 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWD-------EVKDRLGDLAFNLSG 164 (265)
T ss_pred cCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCch-------hhhHHHhCCcccCCH
Confidence 23456788899999999999889999996431 11 1223344444443322 233445666788999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecCh
Q 001580 806 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 884 (1050)
Q Consensus 806 Gq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~ 884 (1050)
|||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++++.. ||++++|++|++++.|++
T Consensus 165 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~ 244 (265)
T PRK14252 165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGAT 244 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999987767899999999999976 999999999999999999
Q ss_pred hHHhhcC
Q 001580 885 EELLSNE 891 (1050)
Q Consensus 885 ~el~~~~ 891 (1050)
+++....
T Consensus 245 ~~~~~~~ 251 (265)
T PRK14252 245 DTIFIKP 251 (265)
T ss_pred HHHHhCC
Confidence 9987543
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=362.43 Aligned_cols=219 Identities=25% Similarity=0.354 Sum_probs=181.5
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhcccc-----CCccEEEECCeecCCC--ChH
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAKF--GLM 737 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~-----p~~G~i~~~g~~i~~~--~~~ 737 (1050)
.++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.++|.++... +..
T Consensus 39 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~ 116 (286)
T PRK14275 39 HVVAKNFSIYYGEF--EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEV 116 (286)
T ss_pred EEEEeeeEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchH
Confidence 58999999999643 69999999999999999999999999999999999864 4999999999988643 233
Q ss_pred HHhhheEEEcCCcccccccHHHhcccCCC---C-CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001580 738 DLRKILGIIPQSPVLFSGTVRFNLDPFSE---H-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 809 (1050)
Q Consensus 738 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~---~-~~----~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~q 809 (1050)
.+|+.++|+||++.+|..|+++|+.+... . .. +.+.++++..++.+ ++..........|||||||
T Consensus 117 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LSgGq~q 189 (286)
T PRK14275 117 LLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWD-------EVSDRLDKNALGLSGGQQQ 189 (286)
T ss_pred HhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCcc-------chhhHhhCChhhCCHHHHH
Confidence 56888999999999998899999975311 1 11 12223333333211 1123345566789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001580 810 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 888 (1050)
Q Consensus 810 rl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 888 (1050)
|++|||||+.+|++|||||||++||+.+...+.+.|+++..++|||++||+++++.. ||++++|++|++++.|+++++.
T Consensus 190 rv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 190 RLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999999876 9999999999999999999987
Q ss_pred hcCC
Q 001580 889 SNEG 892 (1050)
Q Consensus 889 ~~~~ 892 (1050)
+++.
T Consensus 270 ~~~~ 273 (286)
T PRK14275 270 TNPK 273 (286)
T ss_pred hCCC
Confidence 6543
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=349.13 Aligned_cols=203 Identities=31% Similarity=0.466 Sum_probs=174.4
Q ss_pred cEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeEE-------------eCc
Q 001580 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------------RGT 107 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~-------------~~~ 107 (1050)
.|.++|+++.|++ .++++||||+|+.||.+|+.|||||||||||++|+|+..|+.|.+... .++
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~ 78 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRK 78 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcc
Confidence 4789999999974 468999999999999999999999999999999999999999876431 235
Q ss_pred EEEEecCCCCC-cccHHHHhccCCCCC---------HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHH
Q 001580 108 VAYVPQVSWIF-NATVRDNILFGSAFE---------PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 177 (1050)
Q Consensus 108 i~~v~Q~~~l~-~~TV~eni~~g~~~~---------~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~ 177 (1050)
||+|+|+..+| ..||.+||.||.... ..++.+.++.++|...-+..| .+||||||||||
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQRVA 147 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQRVA 147 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHHHH
Confidence 99999999987 789999999996322 234445566777766666555 589999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccc-cCCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhhhc
Q 001580 178 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 255 (1050)
Q Consensus 178 LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~-~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 255 (1050)
|||||+.+|+|||||||+++||++.+..+...|.+.. +.|.|+|+||||.+++.. +|||++|++|+|...|+++|+..
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 9999999999999999999999999999988887754 348999999999999765 79999999999999999999875
Q ss_pred Ch
Q 001580 256 NG 257 (1050)
Q Consensus 256 ~~ 257 (1050)
.+
T Consensus 228 ~P 229 (345)
T COG1118 228 HP 229 (345)
T ss_pred CC
Confidence 53
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=356.86 Aligned_cols=218 Identities=23% Similarity=0.336 Sum_probs=184.5
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccC-----CccEEEECCeecCCC--ChH
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKF--GLM 737 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p-----~~G~i~~~g~~i~~~--~~~ 737 (1050)
.+.++++++.|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++... ...
T Consensus 8 ~~~~~~~~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 8 VMDCKLDKIFYGNF--MAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred eEEEEeEEEEeCCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 38999999999643 699999999999999999999999999999999999987 799999999998643 334
Q ss_pred HHhhheEEEcCCcccccccHHHhcccCCC---C---CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 001580 738 DLRKILGIIPQSPVLFSGTVRFNLDPFSE---H---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 811 (1050)
Q Consensus 738 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~---~---~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl 811 (1050)
.+|+.++|+||++.+|..|+.+|+.+... . ..+++.++++.+++...+. ...++...+|||||+||+
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~G~~qrv 158 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVK-------DKLKVSGLSLSGGQQQRL 158 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHHHHH
Confidence 56788999999999998899999975321 1 1234455555555433322 233456678999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEe--------CCEEEEec
Q 001580 812 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLD--------SGRVLEYD 882 (1050)
Q Consensus 812 ~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~--------~G~i~~~g 882 (1050)
+|||||+++|++|||||||++||+.++..+.+.|+++.+++|+|++||+++++.. ||||++|+ +|++++.|
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g 238 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMG 238 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeC
Confidence 9999999999999999999999999999999999998677899999999999876 99999996 89999999
Q ss_pred ChhHHhhcC
Q 001580 883 TPEELLSNE 891 (1050)
Q Consensus 883 ~~~el~~~~ 891 (1050)
+++++.+..
T Consensus 239 ~~~~~~~~~ 247 (261)
T PRK14263 239 PTAQIFQNP 247 (261)
T ss_pred CHHHHHhCC
Confidence 999997643
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=355.55 Aligned_cols=218 Identities=26% Similarity=0.416 Sum_probs=180.2
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCC-----ccEEEECCeecCC--CChHH
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAK--FGLMD 738 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~-----~G~i~~~g~~i~~--~~~~~ 738 (1050)
++++|++++|++. ++++|+||+|++||++||+||||||||||+++|+|+++|+ +|+|.++|.++.. .+...
T Consensus 5 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T PRK14272 5 LSAQDVNIYYGDK--QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA 82 (252)
T ss_pred EEEeeeEEEECCE--EeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence 7899999999643 6999999999999999999999999999999999999874 8999999999864 33456
Q ss_pred HhhheEEEcCCcccccc-cHHHhcccCC---CC-CHHHHHHH----HHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001580 739 LRKILGIIPQSPVLFSG-TVRFNLDPFS---EH-SDADLWEA----LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 809 (1050)
Q Consensus 739 ~r~~i~~v~Q~~~lf~~-tv~~nl~~~~---~~-~~~~~~~~----l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~q 809 (1050)
+|+.++|+||++.+|.. |+.+|+.+.. .. .+++..+. ++..++.+ ++.........+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~q 155 (252)
T PRK14272 83 MRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWD-------EVKDRLKTPATGLSGGQQQ 155 (252)
T ss_pred hhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcch-------hhhhhhcCCcccCCHHHHH
Confidence 78889999999998875 9999996421 11 12222221 22222211 1222334556789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001580 810 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 888 (1050)
Q Consensus 810 rl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 888 (1050)
|++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 156 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 156 RLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667999999999999987 9999999999999999999997
Q ss_pred hcCC
Q 001580 889 SNEG 892 (1050)
Q Consensus 889 ~~~~ 892 (1050)
..+.
T Consensus 236 ~~~~ 239 (252)
T PRK14272 236 TNPR 239 (252)
T ss_pred hCcC
Confidence 6543
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=366.35 Aligned_cols=204 Identities=33% Similarity=0.474 Sum_probs=177.4
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE----------EeCcEE
Q 001580 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVA 109 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~ 109 (1050)
+.++++|++++|+ +.++++|+||+|++||+++|+|||||||||||++|+|+..|++|.+.. .++.||
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig 80 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIG 80 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccc
Confidence 4699999999997 457999999999999999999999999999999999999999886543 234699
Q ss_pred EEecCCCCC-cccHHHHhccCCCC----C-H---HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHH
Q 001580 110 YVPQVSWIF-NATVRDNILFGSAF----E-P---ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 180 (1050)
Q Consensus 110 ~v~Q~~~l~-~~TV~eni~~g~~~----~-~---~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAr 180 (1050)
+|+|+..|| ..||+|||.||... . . +++.+.++..++....+..| .+|||||||||||||
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVALAR 149 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVALAR 149 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHHHH
Confidence 999999998 78999999999651 1 1 25566677777777665555 589999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccc-cCCcEEEEeccCcchhh-hcCEEEEEcCCeEeeccChhhhhcCh
Q 001580 181 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNG 257 (1050)
Q Consensus 181 aL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~-~~g~t~ilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 257 (1050)
||+.+|+|||||||+|+||.+.+..+...+++.. ..|.|.|+||||.+++- .+|||++|++|+|...|+++++...+
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 9999999999999999999999999988888764 35999999999998865 56999999999999999999987664
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=357.93 Aligned_cols=220 Identities=25% Similarity=0.348 Sum_probs=182.3
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCC--------ccEEEECCeecCCCChH
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE--------RGRILIDGFDIAKFGLM 737 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~--------~G~i~~~g~~i~~~~~~ 737 (1050)
++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|+ +|+|.++|.++...+..
T Consensus 2 l~~~nl~~~~~~~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARRHR--AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEECCE--eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 7899999999643 6999999999999999999999999999999999999998 99999999999887777
Q ss_pred HHhhheEEEcCCcc-cccccHHHhcccCCC-C-CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001580 738 DLRKILGIIPQSPV-LFSGTVRFNLDPFSE-H-SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 814 (1050)
Q Consensus 738 ~~r~~i~~v~Q~~~-lf~~tv~~nl~~~~~-~-~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lA 814 (1050)
.+++.++|+||++. +|..|+++|+.+... . .............+.+.++. .|+.+..+....+||||||||++||
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~l~~~~~~~~~~LSgG~~qrv~la 157 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALAL--AGATALVGRDVTTLSGGELARVQFA 157 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHH--cCcHhhhcCCcccCCHHHHHHHHHH
Confidence 78888999999986 567799999965311 0 00000000000112233333 3566666777789999999999999
Q ss_pred HHHc---------cCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001580 815 RALL---------RRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 882 (1050)
Q Consensus 815 rall---------~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 882 (1050)
|||+ .+|++|||||||++||+.++..+.+.|+++.+ ++|||+|||+++.+.. ||++++|++|++++.|
T Consensus 158 ral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g 237 (272)
T PRK13547 158 RVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHG 237 (272)
T ss_pred HHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEec
Confidence 9999 59999999999999999999999999998653 7899999999999976 9999999999999999
Q ss_pred ChhHHhh
Q 001580 883 TPEELLS 889 (1050)
Q Consensus 883 ~~~el~~ 889 (1050)
+++++..
T Consensus 238 ~~~~~~~ 244 (272)
T PRK13547 238 APADVLT 244 (272)
T ss_pred CHHHHcC
Confidence 9988854
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=358.75 Aligned_cols=219 Identities=21% Similarity=0.349 Sum_probs=177.6
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCC---ccEEEECCeecCCC-----Ch
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE---RGRILIDGFDIAKF-----GL 736 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~-----~~ 736 (1050)
.++++||+++|++. ++|+|+||+|.+||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +.
T Consensus 4 ~l~~~nl~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 4 IIRVEKLAKTFNQH--QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EEEEeeEEEEeCCe--EEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 38999999999643 6999999999999999999999999999999999999986 49999999988653 23
Q ss_pred HHHhhheEEEcCCcccccc-cHHHhcccCCCC-CHH--H---HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001580 737 MDLRKILGIIPQSPVLFSG-TVRFNLDPFSEH-SDA--D---LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 809 (1050)
Q Consensus 737 ~~~r~~i~~v~Q~~~lf~~-tv~~nl~~~~~~-~~~--~---~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~q 809 (1050)
..+++.++|+||++.+|.. |+.+|+.+.... ... . .........+.+.++.+ |+.........+|||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~q 159 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRV--GMVHFAHQRVSTLSGGQQQ 159 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHc--CCHHHHhCCccccCHHHHH
Confidence 4567889999999988874 999999643110 000 0 00000011223334332 4444455566789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhH
Q 001580 810 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 886 (1050)
Q Consensus 810 rl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~e 886 (1050)
|++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 160 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~ 239 (262)
T PRK09984 160 RVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQ 239 (262)
T ss_pred HHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999875 37899999999998766 99999999999999999998
Q ss_pred H
Q 001580 887 L 887 (1050)
Q Consensus 887 l 887 (1050)
+
T Consensus 240 ~ 240 (262)
T PRK09984 240 F 240 (262)
T ss_pred h
Confidence 6
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-40 Score=356.68 Aligned_cols=215 Identities=22% Similarity=0.289 Sum_probs=175.1
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccc--cCCccEEEECCeecCCCChHHH-hhh
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV--ELERGRILIDGFDIAKFGLMDL-RKI 742 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~--~p~~G~i~~~g~~i~~~~~~~~-r~~ 742 (1050)
|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++...+.... +..
T Consensus 1 l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVEDK--EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECCE--EEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 4689999999643 6999999999999999999999999999999999994 7999999999999988776554 445
Q ss_pred eEEEcCCcccccc-cHHHhcccCCC----------CCHHHHHHHHHHhcHHHHHHHccCCcch-hhhcCCC-CCChhHHH
Q 001580 743 LGIIPQSPVLFSG-TVRFNLDPFSE----------HSDADLWEALERAHLKDAIRRNSLGLDA-QVSEAGE-NFSVGQRQ 809 (1050)
Q Consensus 743 i~~v~Q~~~lf~~-tv~~nl~~~~~----------~~~~~~~~~l~~~~~~~~i~~~p~gl~t-~v~~~~~-~LSgGq~q 809 (1050)
++|+||++.+|.. |+++|+.+... ....+.. ..+.+.++.+ |+.. ....... .|||||||
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~~LS~G~~q 151 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFL-----KLLKAKLALL--GMDEEFLNRSVNEGFSGGEKK 151 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHH-----HHHHHHHHHc--CCchhhcccccccCcCHHHHH
Confidence 9999999998876 89998853210 0101110 1123334332 4432 2333444 59999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh--cCEEEEEeCCEEEEecChhH
Q 001580 810 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID--CDRILLLDSGRVLEYDTPEE 886 (1050)
Q Consensus 810 rl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~--~d~i~vl~~G~i~~~g~~~e 886 (1050)
|++|||||+.+|++|||||||++||+.+++.+.+.|+++. +++|||+|||+++.+.. ||++++|++|++++.|++++
T Consensus 152 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (243)
T TIGR01978 152 RNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVEL 231 (243)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHH
Confidence 9999999999999999999999999999999999999875 47899999999999976 79999999999999999987
Q ss_pred Hhh
Q 001580 887 LLS 889 (1050)
Q Consensus 887 l~~ 889 (1050)
+..
T Consensus 232 ~~~ 234 (243)
T TIGR01978 232 AKE 234 (243)
T ss_pred hcc
Confidence 653
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=371.58 Aligned_cols=211 Identities=23% Similarity=0.397 Sum_probs=178.6
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCC----hHHHhh
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG----LMDLRK 741 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~----~~~~r~ 741 (1050)
|++ |++++|++. .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ....++
T Consensus 2 l~~-~l~k~~~~~---~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 2 LEL-NFKQQLGDL---CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred eEE-EEEEEeCCE---EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 567 999999642 33 899999999999999999999999999999999999999999999986422 334678
Q ss_pred heEEEcCCcccccc-cHHHhcccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHcc
Q 001580 742 ILGIIPQSPVLFSG-TVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 819 (1050)
Q Consensus 742 ~i~~v~Q~~~lf~~-tv~~nl~~~~~-~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~ 819 (1050)
+++|+||++.+|.. |+++|+.+... ...+++.+.++..+ ++........+||||||||++|||||+.
T Consensus 77 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LSgGq~qRvalaraL~~ 145 (352)
T PRK11144 77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLG-----------IEPLLDRYPGSLSGGEKQRVAIGRALLT 145 (352)
T ss_pred CEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcC-----------CchhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 89999999999965 99999975422 22334444444444 4444455567899999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 001580 820 RSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 892 (1050)
Q Consensus 820 ~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~ 892 (1050)
+|++|||||||++||+.+++.+.+.|+++.+ ++|+|+|||+++++.. ||+|++|++|++++.|+++++..++.
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~ 221 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA 221 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence 9999999999999999999999999998653 6899999999999877 99999999999999999999987653
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-39 Score=398.36 Aligned_cols=102 Identities=27% Similarity=0.450 Sum_probs=92.5
Q ss_pred Ccch-hhhcCCCCCChhHHHHHHHHHHHccCC---CEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhh
Q 001580 791 GLDA-QVSEAGENFSVGQRQLLSLSRALLRRS---KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTII 865 (1050)
Q Consensus 791 gl~t-~v~~~~~~LSgGq~qrl~lArall~~p---~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~ 865 (1050)
|+.. ..+....+||||||||+.|||+|+++| +++||||||+|||+.+...+.+.|+++. .|.|||+|||+++.+.
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 5543 357778899999999999999999999 9999999999999999999999999875 5789999999999998
Q ss_pred hcCEEEEE------eCCEEEEecChhHHhhcCC
Q 001580 866 DCDRILLL------DSGRVLEYDTPEELLSNEG 892 (1050)
Q Consensus 866 ~~d~i~vl------~~G~i~~~g~~~el~~~~~ 892 (1050)
.||+|++| ++|+|++.|+++++.....
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~ 930 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEA 930 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcc
Confidence 89999999 7999999999999987654
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=355.93 Aligned_cols=218 Identities=27% Similarity=0.422 Sum_probs=182.5
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCC-----ccEEEECCeecCC--CChH
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAK--FGLM 737 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~-----~G~i~~~g~~i~~--~~~~ 737 (1050)
.|+++|++++|+.. .+|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|.++.. .+..
T Consensus 7 ~l~~~nl~~~~~~~--~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 7 AIKVNNLSFYYDTQ--KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred eEEEeeEEEEeCCe--eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchH
Confidence 59999999999643 6999999999999999999999999999999999999985 8999999998753 2345
Q ss_pred HHhhheEEEcCCcccccccHHHhcccCC---C-CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001580 738 DLRKILGIIPQSPVLFSGTVRFNLDPFS---E-HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 809 (1050)
Q Consensus 738 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~-~~~----~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~q 809 (1050)
.+|+.++|+||++.+|..|+.+|+.+.. . ... +.+.++++..++.+++ ....+..+.+|||||||
T Consensus 85 ~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq~q 157 (261)
T PRK14258 85 RLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEI-------KHKIHKSALDLSGGQQQ 157 (261)
T ss_pred HhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchh-------hhHhcCCcccCCHHHHH
Confidence 6788899999999998899999996421 1 111 2233344444433222 22345666789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeC-----CEEEEe
Q 001580 810 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDS-----GRVLEY 881 (1050)
Q Consensus 810 rl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~-----G~i~~~ 881 (1050)
|++|||||+++|+||||||||++||+.+...+.+.|+++. .++|+|+|||+++++.. ||+|++|++ |++++.
T Consensus 158 rv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 237 (261)
T PRK14258 158 RLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEF 237 (261)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEe
Confidence 9999999999999999999999999999999999999853 47999999999999877 999999999 999999
Q ss_pred cChhHHhhcC
Q 001580 882 DTPEELLSNE 891 (1050)
Q Consensus 882 g~~~el~~~~ 891 (1050)
|+++++...+
T Consensus 238 ~~~~~~~~~~ 247 (261)
T PRK14258 238 GLTKKIFNSP 247 (261)
T ss_pred CCHHHHHhCC
Confidence 9999997654
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=346.49 Aligned_cols=201 Identities=23% Similarity=0.376 Sum_probs=170.4
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
++++||+++|+. .++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ .+++.++|
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM 74 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence 368999999952 568999999999999999999999999999999999999999999999987543 36778999
Q ss_pred EcCCcccccc-cHHHhcccC-CC-C-----CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHH
Q 001580 746 IPQSPVLFSG-TVRFNLDPF-SE-H-----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 817 (1050)
Q Consensus 746 v~Q~~~lf~~-tv~~nl~~~-~~-~-----~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAral 817 (1050)
+||++.+|.. |+.+|+.+. .. . .+.++.++++..++.+.. .....+||||||||++||||+
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~laral 143 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYL-----------DRLPEQLSGGQRQRVALARCL 143 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHh-----------hCCcccCCHHHHHHHHHHHHH
Confidence 9999998875 999998642 11 1 122344455555554443 444468999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecC
Q 001580 818 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 883 (1050)
Q Consensus 818 l~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~ 883 (1050)
+.+|+||||||||++||+.+...+.+.|++..+ ++|+|+|||+++++.. ||++++|++|++++.|.
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999998653 7899999999999876 99999999999998875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=350.65 Aligned_cols=209 Identities=28% Similarity=0.461 Sum_probs=177.8
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
|+++|++++|++ ++|+|+||+|.+||++||+||||||||||+++|+|+++|++|+|+++|.++...+. .++.++|
T Consensus 1 l~~~~l~~~~~~---~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKE---FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISY 75 (235)
T ss_pred CeeEeEEEEeCC---ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEE
Confidence 468999999963 38999999999999999999999999999999999999999999999999876554 3678999
Q ss_pred EcCCccccc-ccHHHhcccCCC---CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHH
Q 001580 746 IPQSPVLFS-GTVRFNLDPFSE---HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 817 (1050)
Q Consensus 746 v~Q~~~lf~-~tv~~nl~~~~~---~~----~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAral 817 (1050)
+||++.+|. .|+.+|+.+... .. ++++.++++.. |+...+.....+||||||||++||||+
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrl~laral 144 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEML-----------GIDHLLNRKPETLSGGEQQRVAIARAL 144 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CChhHHhcCcccCCHHHHHHHHHHHHH
Confidence 999999885 599999964211 11 11233334443 344444555578999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001580 818 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890 (1050)
Q Consensus 818 l~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 890 (1050)
+++|++|+|||||++||+.+.+.+++.|+++.. ++|+|++||+++++.. ||++++|++|++++.|+++++.+.
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 999999999999999999999999999998653 7999999999999876 999999999999999999988764
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=321.90 Aligned_cols=194 Identities=25% Similarity=0.462 Sum_probs=173.6
Q ss_pred cEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE---------------Ee
Q 001580 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IR 105 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------~~ 105 (1050)
+|+|+||++.|+.. +++|+||||+|++||++.|+||||||||||+|+|.++..|+.|.+.. .+
T Consensus 1 mI~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LR 78 (223)
T COG2884 1 MIRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLR 78 (223)
T ss_pred CeeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhh
Confidence 48999999999853 67999999999999999999999999999999999999999886543 35
Q ss_pred CcEEEEecCCCCC-cccHHHHhccCCCC---C----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHH
Q 001580 106 GTVAYVPQVSWIF-NATVRDNILFGSAF---E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 177 (1050)
Q Consensus 106 ~~i~~v~Q~~~l~-~~TV~eni~~g~~~---~----~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~ 177 (1050)
++||+|+|+..|. ..||+||++|.... . .+++..++++.+|.+....+|. +|||||||||+
T Consensus 79 R~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRva 147 (223)
T COG2884 79 RQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVA 147 (223)
T ss_pred heeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHH
Confidence 5799999999874 88999999986431 1 2456678899999999988884 89999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhhc-CEEEEEcCCeEeec
Q 001580 178 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEE 247 (1050)
Q Consensus 178 LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~~-d~i~~l~~G~i~~~ 247 (1050)
||||++.+|++||-||||.+|||.....|++.+.+..+.|.|||+.|||.+.++.. -|++.+++|+++.+
T Consensus 148 IARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d 218 (223)
T COG2884 148 IARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRD 218 (223)
T ss_pred HHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEec
Confidence 99999999999999999999999999999998878888899999999999999987 89999999998854
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=355.07 Aligned_cols=206 Identities=23% Similarity=0.343 Sum_probs=171.2
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
++++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... +..++|
T Consensus 2 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~ 74 (255)
T PRK11248 2 LQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGV 74 (255)
T ss_pred EEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEE
Confidence 789999999964 3699999999999999999999999999999999999999999999999988642 246899
Q ss_pred EcCCccccc-ccHHHhcccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 001580 746 IPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 821 (1050)
Q Consensus 746 v~Q~~~lf~-~tv~~nl~~~~---~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p 821 (1050)
+||++.+|. .|+++|+.+.. .....+.. ..+.++++.+ |++......+.+||||||||++|||||+.+|
T Consensus 75 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgGq~qrl~laral~~~p 147 (255)
T PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRL-----EIAHQMLKKV--GLEGAEKRYIWQLSGGQRQRVGIARALAANP 147 (255)
T ss_pred EeCCCccCCCCcHHHHHHhHHHHcCCCHHHHH-----HHHHHHHHHc--CChhHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999999887 49999996431 11111111 1123334432 4444445566789999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEe--CCEEEEecChh
Q 001580 822 KILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLD--SGRVLEYDTPE 885 (1050)
Q Consensus 822 ~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~--~G~i~~~g~~~ 885 (1050)
++|||||||++||+.+...+.+.|+++. .++|+|+|||+++++.. ||+|++|+ +|++++.++.+
T Consensus 148 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 148 QLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 9999999999999999999999999863 37999999999999876 99999998 59999987754
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=360.98 Aligned_cols=218 Identities=27% Similarity=0.467 Sum_probs=182.6
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhcccc-----CCccEEEECCeecCCC--Ch
Q 001580 664 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAKF--GL 736 (1050)
Q Consensus 664 ~~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~-----p~~G~i~~~g~~i~~~--~~ 736 (1050)
..|+++|++++|++. ++|+++||+|.+||++||+|+||||||||+++|+|+++ |++|+|.++|.++... +.
T Consensus 44 ~~l~i~nl~~~~~~~--~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~ 121 (305)
T PRK14264 44 AKLSVEDLDVYYGDD--HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121 (305)
T ss_pred ceEEEEEEEEEeCCe--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccH
Confidence 359999999999753 69999999999999999999999999999999999986 6899999999998643 34
Q ss_pred HHHhhheEEEcCCcccccccHHHhcccCCCC--------------------CHHHHHHHHHHhcHHHHHHHccCCcchhh
Q 001580 737 MDLRKILGIIPQSPVLFSGTVRFNLDPFSEH--------------------SDADLWEALERAHLKDAIRRNSLGLDAQV 796 (1050)
Q Consensus 737 ~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~--------------------~~~~~~~~l~~~~~~~~i~~~p~gl~t~v 796 (1050)
..+|+.++|+||++.+|..|+++|+.+.... .++.+.++++.+++ +.++.+..
T Consensus 122 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~ 194 (305)
T PRK14264 122 VELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAAL-------WDEVNDRL 194 (305)
T ss_pred HHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCC-------chhhhHHh
Confidence 5678899999999999988999999742110 01122233333322 12334556
Q ss_pred hcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEE-EEEe
Q 001580 797 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRI-LLLD 874 (1050)
Q Consensus 797 ~~~~~~LSgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i-~vl~ 874 (1050)
+..+.+||||||||++|||||+++|+||||||||+|||+.+...+.+.|+++.++.|+|+|||+++.+.. ||++ ++|+
T Consensus 195 ~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~ 274 (305)
T PRK14264 195 DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLT 274 (305)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEec
Confidence 6777899999999999999999999999999999999999999999999998777899999999999876 9997 5679
Q ss_pred CCEEEEecChhHHhhc
Q 001580 875 SGRVLEYDTPEELLSN 890 (1050)
Q Consensus 875 ~G~i~~~g~~~el~~~ 890 (1050)
+|++++.|+++++...
T Consensus 275 ~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 275 GGELVEYDDTDKIFEN 290 (305)
T ss_pred CCEEEEeCCHHHHHhC
Confidence 9999999999998754
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=352.81 Aligned_cols=219 Identities=26% Similarity=0.450 Sum_probs=181.2
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECC------eecCCCChHH
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG------FDIAKFGLMD 738 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g------~~i~~~~~~~ 738 (1050)
.+.++|++++|++. ++|+|+||+|.+||++||+||||||||||+++|+|+++|++|+|.++| .++...+...
T Consensus 10 ~i~~~~~~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 10 VFNISRLYLYINDK--AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK 87 (257)
T ss_pred heeeeeEEEecCCc--eeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHH
Confidence 49999999999653 699999999999999999999999999999999999999997666655 6666666667
Q ss_pred HhhheEEEcCCcccccc-cHHHhcccCC---CC-CHHH----HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001580 739 LRKILGIIPQSPVLFSG-TVRFNLDPFS---EH-SDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 809 (1050)
Q Consensus 739 ~r~~i~~v~Q~~~lf~~-tv~~nl~~~~---~~-~~~~----~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~q 809 (1050)
+|+.++|+||++.+|.+ |+.+|+.+.. .. ...+ +.++++..++...+ ....+..+..|||||||
T Consensus 88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~q 160 (257)
T PRK14246 88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-------YDRLNSPASQLSGGQQQ 160 (257)
T ss_pred HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc-------hhhhcCCcccCCHHHHH
Confidence 88899999999999875 9999997431 11 1222 22233333322111 12345566789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001580 810 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 888 (1050)
Q Consensus 810 rl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 888 (1050)
|++||||++.+|++|||||||++||+.++..+.+.|.++.+++|+|+|||+++++.. ||++++|++|++++.|+++++.
T Consensus 161 rl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 161 RLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999999987667999999999999965 9999999999999999999998
Q ss_pred hcCC
Q 001580 889 SNEG 892 (1050)
Q Consensus 889 ~~~~ 892 (1050)
..+.
T Consensus 241 ~~~~ 244 (257)
T PRK14246 241 TSPK 244 (257)
T ss_pred hCCC
Confidence 6543
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=353.09 Aligned_cols=218 Identities=23% Similarity=0.372 Sum_probs=180.8
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhcccc--C---CccEEEECCeecCCC--ChH
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE--L---ERGRILIDGFDIAKF--GLM 737 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~--p---~~G~i~~~g~~i~~~--~~~ 737 (1050)
.++++||+++|+. +++|+|+||+|.+||++||+||||||||||+++|+|+++ | ++|+|.++|.++... +..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 5 IITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred eEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 3899999999974 369999999999999999999999999999999999975 5 589999999988642 334
Q ss_pred HHhhheEEEcCCcccccccHHHhcccCC---CC-CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001580 738 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 809 (1050)
Q Consensus 738 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~-~~----~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~q 809 (1050)
.+++.++|+||++.+|..|+++|+.+.. .. .+ +++.++++.+++.. ++.........+|||||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~i~~~~~~~~~~LS~Gq~q 155 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWD-------EVKDHLHESALSLSGGQQQ 155 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcc-------chhhHHhcCcccCCHHHHH
Confidence 5678899999999999889999986421 11 11 12222333332221 2233455667789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001580 810 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 888 (1050)
Q Consensus 810 rl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 888 (1050)
|++|||||+.+|++|||||||++||+.++..+.+.|+++.+++|+|+|||+++++.. ||+|++|++|++++.|++.++.
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987667899999999999876 9999999999999999999987
Q ss_pred hcC
Q 001580 889 SNE 891 (1050)
Q Consensus 889 ~~~ 891 (1050)
..+
T Consensus 236 ~~~ 238 (252)
T PRK14255 236 LNP 238 (252)
T ss_pred cCC
Confidence 654
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=337.17 Aligned_cols=194 Identities=28% Similarity=0.440 Sum_probs=159.8
Q ss_pred EEEEeEEEEeCCCCC-CCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeEE----------------
Q 001580 42 ISIRNGYFSWDSKAE-RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI---------------- 104 (1050)
Q Consensus 42 i~~~~~~f~~~~~~~-~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~---------------- 104 (1050)
++++|+++.|..... .++|+++||+|++||+++|+|||||||||||++|.|+..|++|.+...
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 679999999975322 479999999999999999999999999999999999999988765431
Q ss_pred eCcEEEEecCCCCC-cccHHHHhccC----CCCC---HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHH
Q 001580 105 RGTVAYVPQVSWIF-NATVRDNILFG----SAFE---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 176 (1050)
Q Consensus 105 ~~~i~~v~Q~~~l~-~~TV~eni~~g----~~~~---~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv 176 (1050)
+..||||+|+..|. ..||.|||.+. .... ..+....++..++.+... .....+|||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~----------~~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL----------KKKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc----------cCCchhcCHHHHHHH
Confidence 23599999998875 88999999853 1111 223333444555554443 122368999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhhcCEEEEEcCCeEe
Q 001580 177 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVK 245 (1050)
Q Consensus 177 ~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~~d~i~~l~~G~i~ 245 (1050)
||||||+.+|++++.||||.+||.++.+.+++.+....+ .|+|+|+||||...+..|||++.+.+|++.
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 999999999999999999999999999999998887654 489999999999999999999999999843
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=332.50 Aligned_cols=171 Identities=50% Similarity=0.798 Sum_probs=159.6
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
++++|++++|++...++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 46899999996532369999999999999999999999999999999999999999999999999988777778889999
Q ss_pred EcCCcccccccHHHhcccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCEEE
Q 001580 746 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 825 (1050)
Q Consensus 746 v~Q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~ill 825 (1050)
+||++.+|..|+.+|+ ||||||||++||||++.+|++||
T Consensus 81 ~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~lll 119 (171)
T cd03228 81 VPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPILI 119 (171)
T ss_pred EcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999888998886 99999999999999999999999
Q ss_pred EeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCE
Q 001580 826 LDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGR 877 (1050)
Q Consensus 826 LDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~ 877 (1050)
|||||++||+.+...+.+.|+++.+++|+|++||+++.+..||++++|++|+
T Consensus 120 lDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 120 LDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999998877799999999999997799999999984
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=322.99 Aligned_cols=212 Identities=26% Similarity=0.442 Sum_probs=184.6
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
|+.+|+|++..++ .+|+++||+++|||++||+||||||||||++.|+|.+.|++|++.++|.++..+++.++-++-++
T Consensus 2 i~a~nls~~~~Gr--~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 2 IRAENLSYSLAGR--RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred eeeeeeEEEeecc--eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 7889999988654 69999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCccc-ccccHHHhcccCC----C--C-CHHH--HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001580 746 IPQSPVL-FSGTVRFNLDPFS----E--H-SDAD--LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 815 (1050)
Q Consensus 746 v~Q~~~l-f~~tv~~nl~~~~----~--~-~~~~--~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAr 815 (1050)
+||+..+ |.-||+|-+.++. . . .+++ ..+++.++++..+-.+. -..|||||||||.|||
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~-----------y~~LSGGEqQRVqlAR 148 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRD-----------YRTLSGGEQQRVQLAR 148 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccc-----------hhhcCchHHHHHHHHH
Confidence 9999875 7789999775432 1 1 1222 56677777776655442 3579999999999999
Q ss_pred HHcc------CCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 001580 816 ALLR------RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 887 (1050)
Q Consensus 816 all~------~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 887 (1050)
.|.+ ++++|+||||||+||+.....+.+..+++. .|+.|+.|-||++.... ||||++|.+||+++.|+|++.
T Consensus 149 vLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~v 228 (259)
T COG4559 149 VLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDV 228 (259)
T ss_pred HHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHh
Confidence 9986 346999999999999999999999999965 57899999999999866 999999999999999999999
Q ss_pred hhc
Q 001580 888 LSN 890 (1050)
Q Consensus 888 ~~~ 890 (1050)
+..
T Consensus 229 lt~ 231 (259)
T COG4559 229 LTD 231 (259)
T ss_pred cCH
Confidence 864
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=346.15 Aligned_cols=204 Identities=25% Similarity=0.403 Sum_probs=173.1
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
++++|++++|+. .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ++.++|
T Consensus 1 l~l~~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGS 74 (223)
T ss_pred CEEEeEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEE
Confidence 468999999964 36999999999999999999999999999999999999999999999999875321 357999
Q ss_pred EcCCccccc-ccHHHhcccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 001580 746 IPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 821 (1050)
Q Consensus 746 v~Q~~~lf~-~tv~~nl~~~~---~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p 821 (1050)
+||++.+|. .|+++|+.+.. ...+.++.++++..++.+ .......+||||||||++||||++.+|
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~~rv~laral~~~p 143 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTN-----------TGKKKAKQFSLGMKQRLGIAIALLNHP 143 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcH-----------HHhhhHhhCCHHHHHHHHHHHHHhcCC
Confidence 999998886 59999986421 223344555555544443 334445689999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhH
Q 001580 822 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 886 (1050)
Q Consensus 822 ~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~e 886 (1050)
++|||||||++||+.+.+.+++.|+++. .++|+|++||+++++.. ||+|++|++|++++.|++.+
T Consensus 144 ~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 144 KLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999999999999865 47899999999999866 99999999999999998764
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-40 Score=332.58 Aligned_cols=202 Identities=26% Similarity=0.440 Sum_probs=171.0
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE---------------E
Q 001580 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------I 104 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------~ 104 (1050)
..|+++|+++.||. ++.+|+||||+|++||+++|+|+|||||||||++|.|+.+|++|.+.. +
T Consensus 2 ~~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~ 79 (258)
T COG3638 2 MMIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKL 79 (258)
T ss_pred ceEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHH
Confidence 46999999999983 568999999999999999999999999999999999999999886543 2
Q ss_pred eCcEEEEecCCCCC-cccHHHHhccCCC------------CCHHH---HHHHHHHhCcHHHHhcCCCCCcccccCCCCCC
Q 001580 105 RGTVAYVPQVSWIF-NATVRDNILFGSA------------FEPAR---YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI 168 (1050)
Q Consensus 105 ~~~i~~v~Q~~~l~-~~TV~eni~~g~~------------~~~~~---~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~L 168 (1050)
+..|||++|++.|. ..||.+|++.|.- +.++. ...+++..++.+.. -.+..+|
T Consensus 80 r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A-----------~qra~~L 148 (258)
T COG3638 80 RRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKA-----------YQRASTL 148 (258)
T ss_pred HHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHH-----------HHHhccC
Confidence 34599999999986 7899999998742 12222 22344555544432 2244689
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccc-cCCcEEEEeccCcchhhh-cCEEEEEcCCeEee
Q 001580 169 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKE 246 (1050)
Q Consensus 169 SGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~-~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~ 246 (1050)
||||+|||+|||||+++|+|+|-|||+++|||.+.+.+++.+.+.. ..|.|+|+.-|+++.+.+ ||||+-|++|+|++
T Consensus 149 SGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivf 228 (258)
T COG3638 149 SGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVF 228 (258)
T ss_pred CcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEE
Confidence 9999999999999999999999999999999999999999988764 469999999999999865 89999999999999
Q ss_pred ccChhhhh
Q 001580 247 EGTFEDLS 254 (1050)
Q Consensus 247 ~g~~~~l~ 254 (1050)
+|+++++.
T Consensus 229 Dg~~~el~ 236 (258)
T COG3638 229 DGPASELT 236 (258)
T ss_pred eCChhhhh
Confidence 99998854
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-39 Score=346.96 Aligned_cols=221 Identities=30% Similarity=0.480 Sum_probs=188.0
Q ss_pred EEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeEE------------eCcEE
Q 001580 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------RGTVA 109 (1050)
Q Consensus 42 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~------------~~~i~ 109 (1050)
|+++|+++.|+.. .+++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+... +..++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 4789999999632 3579999999999999999999999999999999999999998865321 23599
Q ss_pred EEecCCCCCcccHHHHhccCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCE
Q 001580 110 YVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 188 (1050)
Q Consensus 110 ~v~Q~~~l~~~TV~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~v 188 (1050)
|++|++++++.||.||+.++.. .........++..++.+.++.++.+..+..+..+.+|||||||||+|||||+.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 9999999888899999988643 223344445556677777777777766777788899999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhhcCEEEEEcCCeEeeccChhhhhcChHHHHHHH
Q 001580 189 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 264 (1050)
Q Consensus 189 llLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~ 264 (1050)
+||||||++||+.+++.+.+.+.+.. +|+|+|++||+++++..||++++|++|++++.|+++++....+.|..+.
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 234 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLY 234 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHHH
Confidence 99999999999999999999887764 4899999999999998899999999999999999988877665565543
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=368.81 Aligned_cols=212 Identities=24% Similarity=0.388 Sum_probs=176.8
Q ss_pred EEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCC----hHHHhhheEE
Q 001580 670 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG----LMDLRKILGI 745 (1050)
Q Consensus 670 ~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~----~~~~r~~i~~ 745 (1050)
|++++|++. .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ....|+.++|
T Consensus 4 ~l~~~~~~~---~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGDF---SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECCE---EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 799999642 35 999999999999999999999999999999999999999999999986532 2346778999
Q ss_pred EcCCcccccc-cHHHhcccCCCC-CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 001580 746 IPQSPVLFSG-TVRFNLDPFSEH-SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 823 (1050)
Q Consensus 746 v~Q~~~lf~~-tv~~nl~~~~~~-~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~i 823 (1050)
+||++.+|.. |+++|+.+.... ...+. ...+.++++. .|++........+||||||||++|||||+.+|++
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~~~~~~-----~~~~~~~l~~--~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~l 152 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRARPSER-----RISFERVIEL--LGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRL 152 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhccChhHH-----HHHHHHHHHH--cCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 9999999975 999999753211 11110 1112333443 2555556666788999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 001580 824 LVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 892 (1050)
Q Consensus 824 llLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~ 892 (1050)
|||||||++||+.+++.+.+.|+++.+ ++|+|+|||+++++.. ||+|++|++|++++.|+++++...+.
T Consensus 153 llLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 224 (354)
T TIGR02142 153 LLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPD 224 (354)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcC
Confidence 999999999999999999999998653 7899999999999876 99999999999999999999987654
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=350.93 Aligned_cols=226 Identities=24% Similarity=0.369 Sum_probs=184.2
Q ss_pred EEEEEEEEEeCC-------CCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChH-
Q 001580 666 IKFEDVVLRYRP-------ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM- 737 (1050)
Q Consensus 666 i~~~~v~~~y~~-------~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~- 737 (1050)
|+++||+++|+. ..+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++.
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~ 83 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence 889999999963 124799999999999999999999999999999999999999999999999998876653
Q ss_pred --HHhhheEEEcCCcc--ccc-ccHHHhcccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcch-hhhcCCCCCChhHHHH
Q 001580 738 --DLRKILGIIPQSPV--LFS-GTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDA-QVSEAGENFSVGQRQL 810 (1050)
Q Consensus 738 --~~r~~i~~v~Q~~~--lf~-~tv~~nl~~~~~-~~~~~~~~~l~~~~~~~~i~~~p~gl~t-~v~~~~~~LSgGq~qr 810 (1050)
.+++.++|+||++. ++. .|+.+|+.+... ... .........+.+.++.+ |+++ ..+.....||||||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~--~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~~LS~Ge~qr 159 (268)
T PRK10419 84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLS--LDKAERLARASEMLRAV--DLDDSVLDKRPPQLSGGQLQR 159 (268)
T ss_pred HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhcc--CCHHHHHHHHHHHHHHc--CCChhHhhCCCccCChHHHHH
Confidence 46788999999983 443 589998743100 000 00111112344555553 6653 5667778999999999
Q ss_pred HHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 001580 811 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 887 (1050)
Q Consensus 811 l~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 887 (1050)
++|||||+.+|+||||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 160 l~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 239 (268)
T PRK10419 160 VCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDK 239 (268)
T ss_pred HHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhc
Confidence 9999999999999999999999999999999999998653 7899999999999986 999999999999999999998
Q ss_pred hhcCCChHH
Q 001580 888 LSNEGSSFS 896 (1050)
Q Consensus 888 ~~~~~~~~~ 896 (1050)
... ...|.
T Consensus 240 ~~~-~~~~~ 247 (268)
T PRK10419 240 LTF-SSPAG 247 (268)
T ss_pred cCC-CCHHH
Confidence 753 33444
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-39 Score=350.64 Aligned_cols=218 Identities=23% Similarity=0.385 Sum_probs=179.8
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCee-----cCCCChHHH
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFD-----IAKFGLMDL 739 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~-----i~~~~~~~~ 739 (1050)
.++++||+++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +...+....
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 3 LLQVSGLSKSYGGG--KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred eEEEeeeEEEeCCc--eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 38999999999643 68999999999999999999999999999999999999999999999987 666655432
Q ss_pred ----hhheEEEcCCcc--cc-cccHHHhccc----CCCCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhH
Q 001580 740 ----RKILGIIPQSPV--LF-SGTVRFNLDP----FSEHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQ 807 (1050)
Q Consensus 740 ----r~~i~~v~Q~~~--lf-~~tv~~nl~~----~~~~~~~~~~~~l~~~~~~~~i~~~p~gl~-t~v~~~~~~LSgGq 807 (1050)
++.++|++|++. ++ ..|+.+|+.. .......+. ...+.++++.+ |+. +........|||||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~LSgG~ 153 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEV--EIDPTRIDDLPRAFSGGM 153 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHc--CCChhhhhcCchhcCHHH
Confidence 457999999984 22 3477777642 111011111 12345666665 443 46677788999999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecCh
Q 001580 808 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 884 (1050)
Q Consensus 808 ~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~ 884 (1050)
|||++|||||+.+|++|||||||++||+.+++.+.+.|++.. .+.|+|+|||+++.+.. ||++++|++|++++.|++
T Consensus 154 ~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~ 233 (253)
T TIGR02323 154 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLT 233 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999998864 37899999999999986 999999999999999999
Q ss_pred hHHhhcC
Q 001580 885 EELLSNE 891 (1050)
Q Consensus 885 ~el~~~~ 891 (1050)
+++....
T Consensus 234 ~~~~~~~ 240 (253)
T TIGR02323 234 DQVLDDP 240 (253)
T ss_pred HHHhcCC
Confidence 9987643
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-39 Score=332.10 Aligned_cols=172 Identities=32% Similarity=0.515 Sum_probs=158.1
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCC--hHHHhhhe
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG--LMDLRKIL 743 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~--~~~~r~~i 743 (1050)
++++|++++|+. +++++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.+
T Consensus 1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 468999999964 36999999999999999999999999999999999999999999999999998765 55678899
Q ss_pred EEEcCCcccccc-cHHHhcccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 001580 744 GIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 822 (1050)
Q Consensus 744 ~~v~Q~~~lf~~-tv~~nl~~~~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~ 822 (1050)
+|+||++.+|.. |+++|+.+. ||||||||++|||||+++|+
T Consensus 79 ~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p~ 120 (178)
T cd03229 79 GMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDPD 120 (178)
T ss_pred EEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCCC
Confidence 999999988864 999998642 99999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCE
Q 001580 823 ILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGR 877 (1050)
Q Consensus 823 illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~ 877 (1050)
+|||||||++||+.++..+.+.|+++.+ ++|+|++||+++++.. ||++++|++|+
T Consensus 121 llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 121 VLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999998654 6899999999999986 99999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=349.50 Aligned_cols=214 Identities=25% Similarity=0.394 Sum_probs=175.1
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccC----CccEEEECCeecCCCChHHHh
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL----ERGRILIDGFDIAKFGLMDLR 740 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p----~~G~i~~~g~~i~~~~~~~~r 740 (1050)
.++++|++++| + .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... ...+
T Consensus 4 ~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~ 78 (254)
T PRK10418 4 QIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRG 78 (254)
T ss_pred EEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--cccc
Confidence 48999999999 3 3699999999999999999999999999999999999999 999999999988632 2234
Q ss_pred hheEEEcCCcc-ccc--ccHHHhccc----CC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001580 741 KILGIIPQSPV-LFS--GTVRFNLDP----FS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 812 (1050)
Q Consensus 741 ~~i~~v~Q~~~-lf~--~tv~~nl~~----~~-~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~ 812 (1050)
+.++|+||++. .|. .|+.+|+.. .. ...++++.+.++..++.+ ..+.++....+||||||||++
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~~~~~~~~~~~LS~Gq~qrv~ 150 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLEN--------AARVLKLYPFEMSGGMLQRMM 150 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCC--------hhhhhhcCCcccCHHHHHHHH
Confidence 67999999985 343 377776532 11 112233444444433321 112456677889999999999
Q ss_pred HHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001580 813 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889 (1050)
Q Consensus 813 lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 889 (1050)
|||||+.+|+||||||||++||+.+++.+.+.|+++.+ ++|||++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 151 laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 151 IALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230 (254)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 99999999999999999999999999999999998643 7899999999999876 99999999999999999999976
Q ss_pred cC
Q 001580 890 NE 891 (1050)
Q Consensus 890 ~~ 891 (1050)
..
T Consensus 231 ~~ 232 (254)
T PRK10418 231 AP 232 (254)
T ss_pred CC
Confidence 54
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=344.88 Aligned_cols=206 Identities=25% Similarity=0.396 Sum_probs=171.3
Q ss_pred EEEEEEEEEeCCC--CCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChH---HHh
Q 001580 666 IKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM---DLR 740 (1050)
Q Consensus 666 i~~~~v~~~y~~~--~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~---~~r 740 (1050)
++++|+++.|+++ ...+|+|+||++++|+++||+|+||||||||+++|+|+++|++|+|.++|.++...++. ..+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 7899999999642 14699999999999999999999999999999999999999999999999999776643 357
Q ss_pred hheEEEcCCccccc-ccHHHhcccCC----CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001580 741 KILGIIPQSPVLFS-GTVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 815 (1050)
Q Consensus 741 ~~i~~v~Q~~~lf~-~tv~~nl~~~~----~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAr 815 (1050)
+.++|+||++.+|. .|+.+|+.+.. .....+..+ .+.+.++.+ |+.......+.+||||||||++|||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~lS~G~~qrv~lar 154 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARE-----RARAMLEAV--GLGDHLDYYPHNLSGGQKQRVAIAR 154 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHH-----HHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHH
Confidence 88999999999887 59999997432 111111111 123334432 4555555566789999999999999
Q ss_pred HHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhhcCEEEEEeCCEE
Q 001580 816 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRV 878 (1050)
Q Consensus 816 all~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i 878 (1050)
||+.+|++|||||||++||+.++..+.+.|+++.+ ++|+|++||+++....||+|++|++|++
T Consensus 155 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 155 ALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999998753 7999999999997666999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-39 Score=329.78 Aligned_cols=170 Identities=31% Similarity=0.575 Sum_probs=156.3
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
++++|++++|++. ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGKK--TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEE
Confidence 4689999999643 6999999999999999999999999999999999999999999999999987655 567788999
Q ss_pred EcCCcccccc-cHHHhcccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCEE
Q 001580 746 IPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 824 (1050)
Q Consensus 746 v~Q~~~lf~~-tv~~nl~~~~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~il 824 (1050)
+||++.+|.. |+++|+. ||||||||++|||||+.+|++|
T Consensus 78 ~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 78 LPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred EecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 9999988876 9998862 9999999999999999999999
Q ss_pred EEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEE
Q 001580 825 VLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRV 878 (1050)
Q Consensus 825 lLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i 878 (1050)
||||||++||+.+.+.+.+.|++.. ++.|+|++||+++++.. ||++++|++|++
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999875 46899999999999886 999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-38 Score=345.49 Aligned_cols=221 Identities=36% Similarity=0.669 Sum_probs=188.9
Q ss_pred CCCCCCCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeEEeCcEEEEec
Q 001580 34 PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQ 113 (1050)
Q Consensus 34 ~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q 113 (1050)
+...+.+.|+++|+++.+ +++|+++||+|++|++++|+|+||||||||+++|+|+++|++|.+ .+.+.|+|++|
T Consensus 32 ~~~~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I-~i~g~i~yv~q 105 (282)
T cd03291 32 KHSSDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKI-KHSGRISFSSQ 105 (282)
T ss_pred ccCCCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEEEEEeC
Confidence 334455679999999952 469999999999999999999999999999999999999998765 46778999999
Q ss_pred CCCCCcccHHHHhccCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeC
Q 001580 114 VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 193 (1050)
Q Consensus 114 ~~~l~~~TV~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vllLDE 193 (1050)
++.+++.||+||+.++......++...++.+++.+.++.++.+..+.++..+.+||||||||++|||||+.+|++|||||
T Consensus 106 ~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDE 185 (282)
T cd03291 106 FSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDS 185 (282)
T ss_pred cccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99998889999999875444344455666778888888888887788888889999999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhhcCEEEEEcCCeEeeccChhhhhcChHHH
Q 001580 194 PLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELF 260 (1050)
Q Consensus 194 Pts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 260 (1050)
||++||+.+++.+.+.+++...++.|+|++||+++++..||++++|++|++++.|+++++......|
T Consensus 186 Pt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~ 252 (282)
T cd03291 186 PFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDF 252 (282)
T ss_pred CCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhcchHH
Confidence 9999999999999886543333578999999999999889999999999999999998887543333
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=340.81 Aligned_cols=201 Identities=24% Similarity=0.389 Sum_probs=167.8
Q ss_pred EEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCC----ChHHHhhheEE
Q 001580 670 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF----GLMDLRKILGI 745 (1050)
Q Consensus 670 ~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~----~~~~~r~~i~~ 745 (1050)
||+++|++. .+ |+||+|++ |++||+||||||||||+++|+|+++|++|+|.++|.++... +....++.++|
T Consensus 5 ~l~~~~~~~--~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 79 (214)
T cd03297 5 DIEKRLPDF--TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGL 79 (214)
T ss_pred eeeEecCCe--ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEE
Confidence 899999753 34 99999999 99999999999999999999999999999999999988642 22346778999
Q ss_pred EcCCccccc-ccHHHhcccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 001580 746 IPQSPVLFS-GTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 823 (1050)
Q Consensus 746 v~Q~~~lf~-~tv~~nl~~~~~-~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~i 823 (1050)
+||++.+|. .|+++|+.+... ..... ....+.++++.+ |++......+.+||||||||++||||++.+|++
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 152 (214)
T cd03297 80 VFQQYALFPHLNVRENLAFGLKRKRNRE-----DRISVDELLDLL--GLDHLLNRYPAQLSGGEKQRVALARALAAQPEL 152 (214)
T ss_pred EecCCccCCCCCHHHHHHHHHhhCCHHH-----HHHHHHHHHHHc--CCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999886 499999874321 11111 112234455543 566666777789999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001580 824 LVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 882 (1050)
Q Consensus 824 llLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 882 (1050)
|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++++.. ||++++|++|++++.|
T Consensus 153 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 153 LLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999998643 7899999999999876 9999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=346.34 Aligned_cols=200 Identities=29% Similarity=0.449 Sum_probs=172.0
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheE
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 744 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 744 (1050)
.++++||+++|++. ++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++| +..++
T Consensus 4 ~l~~~~l~~~~~~~--~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~ 70 (251)
T PRK09544 4 LVSLENVSVSFGQR--RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIG 70 (251)
T ss_pred EEEEeceEEEECCc--eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEE
Confidence 38999999999643 699999999999999999999999999999999999999999999986 24699
Q ss_pred EEcCCccccc---ccHHHhcccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 001580 745 IIPQSPVLFS---GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 821 (1050)
Q Consensus 745 ~v~Q~~~lf~---~tv~~nl~~~~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p 821 (1050)
|+||++.++. .|+.+|+.......++++.++++..++.+++. .....||||||||++|||||+.+|
T Consensus 71 ~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qrv~laral~~~p 139 (251)
T PRK09544 71 YVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLID-----------APMQKLSGGETQRVLLARALLNRP 139 (251)
T ss_pred EeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHh-----------CChhhCCHHHHHHHHHHHHHhcCC
Confidence 9999997764 37888875433334556666677666655443 334679999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001580 822 KILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889 (1050)
Q Consensus 822 ~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 889 (1050)
++|||||||++||+.++..+++.|+++.+ ++|+|+|||+++++.. ||+|++|++ ++++.|+++++..
T Consensus 140 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~ 209 (251)
T PRK09544 140 QLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL 209 (251)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC
Confidence 99999999999999999999999988653 7899999999999876 999999965 7999999999864
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-39 Score=344.03 Aligned_cols=212 Identities=25% Similarity=0.386 Sum_probs=170.8
Q ss_pred EEEEEEEEEeCCC--CCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhcccc---CCccEEEECCeecCCCChHHHh
Q 001580 666 IKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE---LERGRILIDGFDIAKFGLMDLR 740 (1050)
Q Consensus 666 i~~~~v~~~y~~~--~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~---p~~G~i~~~g~~i~~~~~~~~r 740 (1050)
+.++||+++|++. .+++++|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 6789999999654 2579999999999999999999999999999999999999 99999999999875 34578
Q ss_pred hheEEEcCCcccccc-cHHHhcccCCCC-CHHHHHHHHHHhcHHH-HHHHccCCcchhhhcCCCCCChhHHHHHHHHHHH
Q 001580 741 KILGIIPQSPVLFSG-TVRFNLDPFSEH-SDADLWEALERAHLKD-AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 817 (1050)
Q Consensus 741 ~~i~~v~Q~~~lf~~-tv~~nl~~~~~~-~~~~~~~~l~~~~~~~-~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAral 817 (1050)
+.++|+||++.+|.. |+++|+.+.... ......+......... .++. .++..........||||||||++|||||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRD--LALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHh--hcchhhhcccccCcCHHHHHHHHHHHHH
Confidence 889999999999986 999999742110 0000000011111111 2332 2444445556678999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCc-hhhhh-cCEEEEEeCCEEEEec
Q 001580 818 LRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRL-NTIID-CDRILLLDSGRVLEYD 882 (1050)
Q Consensus 818 l~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~-~~~~~-~d~i~vl~~G~i~~~g 882 (1050)
+.+|++|||||||++||+.+...+.+.|++.. .+.|+|++||++ +++.. ||++++|++|++++.|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999864 478999999998 46655 9999999999998865
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=312.81 Aligned_cols=199 Identities=27% Similarity=0.461 Sum_probs=173.3
Q ss_pred EEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeEE----------eCcEEEE
Q 001580 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI----------RGTVAYV 111 (1050)
Q Consensus 42 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~----------~~~i~~v 111 (1050)
|.++++.|+|...+ =..+++|+.||+++|+||+|||||||+++|+|+..|.+|.+... .+.|+++
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSml 76 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML 76 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhh
Confidence 56789999997432 25789999999999999999999999999999999998876542 3459999
Q ss_pred ecCCCCC-cccHHHHhccCCC-------CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHc
Q 001580 112 PQVSWIF-NATVRDNILFGSA-------FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 183 (1050)
Q Consensus 112 ~Q~~~l~-~~TV~eni~~g~~-------~~~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~ 183 (1050)
+|++.|| ..||.+||-+|.. .+.++++.++...++....+.+|. +|||||||||+|||+|+
T Consensus 77 FQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARclv 145 (231)
T COG3840 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARCLV 145 (231)
T ss_pred hhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHHHh
Confidence 9999998 7899999999842 134567777888999999999985 89999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHccc-cCCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhhhcC
Q 001580 184 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 256 (1050)
Q Consensus 184 ~~~~vllLDEPts~LD~~~~~~l~~~l~~~~-~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 256 (1050)
++-+|++||||||+|||.-+..+...+.+.. .++.|+++|||.++.+.. +|+++++++|+|.++|+.+++...
T Consensus 146 R~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 146 REQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred ccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 9999999999999999999999988766653 468999999999999876 699999999999999999887754
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=361.42 Aligned_cols=205 Identities=25% Similarity=0.376 Sum_probs=171.2
Q ss_pred cEEEEeEEEEeCCCC-CCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE---------------E
Q 001580 41 AISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------I 104 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~-~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------~ 104 (1050)
+|+++|++++|+..+ .+++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+.. .
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 378999999996322 347999999999999999999999999999999999999999886532 1
Q ss_pred eCcEEEEecCCCCC-cccHHHHhccCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHH
Q 001580 105 RGTVAYVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 176 (1050)
Q Consensus 105 ~~~i~~v~Q~~~l~-~~TV~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv 176 (1050)
++.|||+||++.++ ..||+||+.++.. ... ++..+.++..++.+..+. ...+|||||||||
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~-----------~~~~LSgGqkQRV 149 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDS-----------YPSNLSGGQKQRV 149 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHH
Confidence 34699999999887 6899999987532 121 223344555555444333 3468999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhhh
Q 001580 177 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLS 254 (1050)
Q Consensus 177 ~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 254 (1050)
+|||||+.+|++|||||||++||+.+...+++.+.+..+ .|.|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 150 ~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 150 AIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999998877654 48999999999999865 8999999999999999999987
Q ss_pred cC
Q 001580 255 NN 256 (1050)
Q Consensus 255 ~~ 256 (1050)
..
T Consensus 230 ~~ 231 (343)
T TIGR02314 230 SH 231 (343)
T ss_pred cC
Confidence 54
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=398.92 Aligned_cols=211 Identities=24% Similarity=0.320 Sum_probs=148.9
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHH---------HHhccccCCcc--------EEEEC
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLN---------TLFRIVELERG--------RILID 727 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~---------~l~g~~~p~~G--------~i~~~ 727 (1050)
.+++++++. ..|+|+||+|++||++||.|+||||||||++ .|.|...+..+ -|.+|
T Consensus 600 ~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~id 672 (1809)
T PRK00635 600 TLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHIT 672 (1809)
T ss_pred eEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEec
Confidence 378888752 3799999999999999999999999999999 55554332111 23444
Q ss_pred CeecCCCCh----H------HHh---------hheE-----EEcCC------------------c---------------
Q 001580 728 GFDIAKFGL----M------DLR---------KILG-----IIPQS------------------P--------------- 750 (1050)
Q Consensus 728 g~~i~~~~~----~------~~r---------~~i~-----~v~Q~------------------~--------------- 750 (1050)
-.++..-+. . .+| +..| +.++. +
T Consensus 673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 333332111 1 233 1122 12221 0
Q ss_pred -----ccccc-cHHHhcccCCCC------CHHHHHHHHHHhcHHHHHHHccCCcchh-hhcCCCCCChhHHHHHHHHHHH
Q 001580 751 -----VLFSG-TVRFNLDPFSEH------SDADLWEALERAHLKDAIRRNSLGLDAQ-VSEAGENFSVGQRQLLSLSRAL 817 (1050)
Q Consensus 751 -----~lf~~-tv~~nl~~~~~~------~~~~~~~~l~~~~~~~~i~~~p~gl~t~-v~~~~~~LSgGq~qrl~lAral 817 (1050)
..+.+ ||.|+|.+.... ...++.+. + +.++. .|+... .++...+||||||||++|||||
T Consensus 753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~-----l-~~L~~--vGL~~l~l~q~~~tLSGGE~QRV~LAraL 824 (1809)
T PRK00635 753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEK-----I-HALCS--LGLDYLPLGRPLSSLSGGEIQRLKLAYEL 824 (1809)
T ss_pred HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHH-----H-HHHHH--cCCcchhhcCccccCCHHHHHHHHHHHHH
Confidence 12333 666666542110 01111111 1 23333 467665 6888889999999999999999
Q ss_pred c---cCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhhcCEEEEEe------CCEEEEecChhHH
Q 001580 818 L---RRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLLD------SGRVLEYDTPEEL 887 (1050)
Q Consensus 818 l---~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~vl~------~G~i~~~g~~~el 887 (1050)
+ .+|++|||||||+|||+.+.+.+.+.|+++. .|.|||+|||+++.+..||+|++|. +|++++.|+++++
T Consensus 825 ~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel 904 (1809)
T PRK00635 825 LAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEEL 904 (1809)
T ss_pred hhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHH
Confidence 8 6999999999999999999999999998865 4789999999999996699999996 7999999999999
Q ss_pred hhc
Q 001580 888 LSN 890 (1050)
Q Consensus 888 ~~~ 890 (1050)
...
T Consensus 905 ~~~ 907 (1809)
T PRK00635 905 IHL 907 (1809)
T ss_pred Hhc
Confidence 753
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=355.50 Aligned_cols=217 Identities=23% Similarity=0.409 Sum_probs=175.1
Q ss_pred CCCCCCCCcEEEEeEEEEeCCCC--CCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE-------
Q 001580 33 PPLTSGLPAISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------- 103 (1050)
Q Consensus 33 ~~~~~~~~~i~~~~~~f~~~~~~--~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------- 103 (1050)
|...++.+.|+++|++|.|+... .+++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+..
T Consensus 13 ~~~~~~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~ 92 (320)
T PRK13631 13 PNPLSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGD 92 (320)
T ss_pred CCCCCCCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccc
Confidence 33445557899999999997421 247999999999999999999999999999999999999999875532
Q ss_pred ---------------------EeCcEEEEecCC--CCCcccHHHHhccCCC---CCHHH----HHHHHHHhCcHHHHhcC
Q 001580 104 ---------------------IRGTVAYVPQVS--WIFNATVRDNILFGSA---FEPAR----YEKAIDVTSLQHDLDLL 153 (1050)
Q Consensus 104 ---------------------~~~~i~~v~Q~~--~l~~~TV~eni~~g~~---~~~~~----~~~~~~~~~l~~~~~~~ 153 (1050)
.++.||||+|+| .++..||+|||.|+.. ...+. ....++..++..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----- 167 (320)
T PRK13631 93 KKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD----- 167 (320)
T ss_pred ccccccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh-----
Confidence 123599999998 5788899999998732 12221 122222333221
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhh-h
Q 001580 154 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-Q 232 (1050)
Q Consensus 154 ~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~-~ 232 (1050)
...+..+.+|||||||||+|||||+.+|++|||||||++||+.+++++++.+.+...+|+|+|+||||++++. .
T Consensus 168 -----~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~ 242 (320)
T PRK13631 168 -----SYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEV 242 (320)
T ss_pred -----hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHh
Confidence 1245566899999999999999999999999999999999999999999988766556899999999999875 5
Q ss_pred cCEEEEEcCCeEeeccChhhhhcChHH
Q 001580 233 VDRIILVHEGMVKEEGTFEDLSNNGEL 259 (1050)
Q Consensus 233 ~d~i~~l~~G~i~~~g~~~~l~~~~~~ 259 (1050)
||+|++|++|++++.|+++++......
T Consensus 243 adri~vl~~G~i~~~g~~~~~~~~~~~ 269 (320)
T PRK13631 243 ADEVIVMDKGKILKTGTPYEIFTDQHI 269 (320)
T ss_pred CCEEEEEECCEEEEeCCHHHHhcCHHH
Confidence 899999999999999999988766443
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=341.13 Aligned_cols=226 Identities=26% Similarity=0.450 Sum_probs=184.4
Q ss_pred EEEEEEEEEeCCC--CCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhcccc-C----CccEEEECCeecCCCChHH
Q 001580 666 IKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-L----ERGRILIDGFDIAKFGLMD 738 (1050)
Q Consensus 666 i~~~~v~~~y~~~--~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~-p----~~G~i~~~g~~i~~~~~~~ 738 (1050)
++++|++..|... ...+++||||+|.+||++||||.|||||||+.++|+|+++ | .+|+|.++|.|+.+++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 6889999999532 2469999999999999999999999999999999999998 4 5799999999999999875
Q ss_pred Hh----hheEEEcCCcc-cccc--cHHHhcc----cCCCC-C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCC
Q 001580 739 LR----KILGIIPQSPV-LFSG--TVRFNLD----PFSEH-S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 802 (1050)
Q Consensus 739 ~r----~~i~~v~Q~~~-lf~~--tv~~nl~----~~~~~-~----~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~ 802 (1050)
+| +.|++|||+|. -++- ||.+.+. ..... . .++..+.++.+++.+ .+..+..-+.+
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~--------~~~~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPD--------PERRLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCC--------HHHHHhhCCcc
Confidence 43 35999999985 2332 6655442 11111 1 223455555555432 11234455678
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEE
Q 001580 803 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVL 879 (1050)
Q Consensus 803 LSgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~ 879 (1050)
||||||||+.||-||+.+|++||.||||++||...++.|.+.|+++. .+.|+|+||||+..+.. ||||+||..|+|+
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 99999999999999999999999999999999999999999999876 47999999999999877 9999999999999
Q ss_pred EecChhHHhhcCCChHHHHH
Q 001580 880 EYDTPEELLSNEGSSFSKMV 899 (1050)
Q Consensus 880 ~~g~~~el~~~~~~~~~~~~ 899 (1050)
|.|+.+++..++...|.+.+
T Consensus 234 E~g~~~~i~~~P~HPYT~~L 253 (316)
T COG0444 234 EEGPVEEIFKNPKHPYTRGL 253 (316)
T ss_pred EeCCHHHHhcCCCChHHHHH
Confidence 99999999998877777544
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=350.13 Aligned_cols=209 Identities=28% Similarity=0.409 Sum_probs=170.7
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheE
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 744 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 744 (1050)
.++++||+++|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ...++.++
T Consensus 6 ~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i~ 81 (272)
T PRK15056 6 GIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLVA 81 (272)
T ss_pred eEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceEE
Confidence 38999999999633 369999999999999999999999999999999999999999999999998742 11234699
Q ss_pred EEcCCccc---ccccHHHhcccCC--------CC---CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001580 745 IIPQSPVL---FSGTVRFNLDPFS--------EH---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 810 (1050)
Q Consensus 745 ~v~Q~~~l---f~~tv~~nl~~~~--------~~---~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qr 810 (1050)
|+||++.+ +..++++|+.+.. .. ..+.+.++++..++ .........+||||||||
T Consensus 82 ~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgG~~qr 150 (272)
T PRK15056 82 YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDM-----------VEFRHRQIGELSGGQKKR 150 (272)
T ss_pred EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCC-----------hhHhcCCcccCCHHHHHH
Confidence 99999865 3447888875311 00 11223334444443 333444557899999999
Q ss_pred HHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001580 811 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 888 (1050)
Q Consensus 811 l~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 888 (1050)
++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|||+|||+++++.. ||+++++ +|++++.|+++++.
T Consensus 151 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 151 VFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 999999999999999999999999999999999999875 47899999999999866 9999777 89999999999875
Q ss_pred h
Q 001580 889 S 889 (1050)
Q Consensus 889 ~ 889 (1050)
.
T Consensus 230 ~ 230 (272)
T PRK15056 230 T 230 (272)
T ss_pred C
Confidence 3
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=334.88 Aligned_cols=189 Identities=26% Similarity=0.373 Sum_probs=161.2
Q ss_pred EEEEEEEEEeCCC--CCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhcccc---CCccEEEECCeecCCCChHHHh
Q 001580 666 IKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE---LERGRILIDGFDIAKFGLMDLR 740 (1050)
Q Consensus 666 i~~~~v~~~y~~~--~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~---p~~G~i~~~g~~i~~~~~~~~r 740 (1050)
+.++||+|.|+.+ .+++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++...+ ...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~~ 82 (202)
T cd03233 4 LSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKYP 82 (202)
T ss_pred EEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhhc
Confidence 7899999999642 4579999999999999999999999999999999999999 89999999999987654 3567
Q ss_pred hheEEEcCCcccccc-cHHHhcccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHcc
Q 001580 741 KILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 819 (1050)
Q Consensus 741 ~~i~~v~Q~~~lf~~-tv~~nl~~~~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~ 819 (1050)
+.++|+||++.+|.. |+++|+.+.... . ..+....||||||||++|||||++
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~------------~---------------~~~~~~~LS~Ge~qrl~laral~~ 135 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRC------------K---------------GNEFVRGISGGERKRVSIAEALVS 135 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhh------------c---------------cccchhhCCHHHHHHHHHHHHHhh
Confidence 789999999988865 999998653100 0 223346799999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEee-cCchhhhh-cCEEEEEeCCEEEEec
Q 001580 820 RSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIA-HRLNTIID-CDRILLLDSGRVLEYD 882 (1050)
Q Consensus 820 ~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vt-H~~~~~~~-~d~i~vl~~G~i~~~g 882 (1050)
+|++|||||||++||+.+++.+++.|+++.+ +.|+|+++ |+++.+.. ||++++|++|++++.|
T Consensus 136 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 136 RASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999999998754 46766655 55677755 9999999999998754
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-39 Score=307.61 Aligned_cols=194 Identities=26% Similarity=0.386 Sum_probs=168.3
Q ss_pred eCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEEEcCCccccc
Q 001580 675 YRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFS 754 (1050)
Q Consensus 675 y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~ 754 (1050)
|.....++|+++||++.+||.++|.||||||||||++.++-+..|++|++++.|.+++..++..+|++|+||-|.|.||.
T Consensus 11 y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg 90 (223)
T COG4619 11 YLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG 90 (223)
T ss_pred hhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccc
Confidence 43334579999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHhcccCC-----CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEecc
Q 001580 755 GTVRFNLDPFS-----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEA 829 (1050)
Q Consensus 755 ~tv~~nl~~~~-----~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~illLDEp 829 (1050)
+||.+|+.|-. ...... +.+++.++. -.++.+..+..+||||||||++|+|-|.--|+|||||||
T Consensus 91 ~tVeDNlifP~~~r~rr~dr~a---------a~~llar~~-l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~ 160 (223)
T COG4619 91 DTVEDNLIFPWQIRNRRPDRAA---------ALDLLARFA-LPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEI 160 (223)
T ss_pred cchhhccccchHHhccCCChHH---------HHHHHHHcC-CchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCc
Confidence 99999997521 112222 233444432 124666777889999999999999999999999999999
Q ss_pred CcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchh-hhhcCEEEEEeCCEE
Q 001580 830 TAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNT-IIDCDRILLLDSGRV 878 (1050)
Q Consensus 830 ts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~-~~~~d~i~vl~~G~i 878 (1050)
||+||+.+.+.|.+.|..+. ++..+++|||+.+. +..+|+++-+..|++
T Consensus 161 TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 161 TSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred hhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 99999999999999999876 36899999999998 566999999999876
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=333.10 Aligned_cols=185 Identities=25% Similarity=0.378 Sum_probs=162.4
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhcc--ccCCccEEEECCeecCCCChHHH-hhh
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI--VELERGRILIDGFDIAKFGLMDL-RKI 742 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~--~~p~~G~i~~~g~~i~~~~~~~~-r~~ 742 (1050)
++++|++++|++ .++++|+||++.+||++||+|+||||||||+++|+|+ ++|++|+|.++|.++...+.... |..
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 468999999974 3699999999999999999999999999999999999 58999999999999988776554 456
Q ss_pred eEEEcCCcccccc-cHHHhcccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 001580 743 LGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 821 (1050)
Q Consensus 743 i~~v~Q~~~lf~~-tv~~nl~~~~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p 821 (1050)
++|+||++.+|.+ ++++++ .. ...+||||||||++||||++.+|
T Consensus 79 i~~v~q~~~~~~~~~~~~~l------------------------~~-----------~~~~LS~G~~qrv~laral~~~p 123 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFL------------------------RY-----------VNEGFSGGEKKRNEILQLLLLEP 123 (200)
T ss_pred EEEeecChhhccCccHHHHH------------------------hh-----------ccccCCHHHHHHHHHHHHHhcCC
Confidence 9999999988875 555544 01 11469999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHHcC-CcEEEEeecCchhhh--hcCEEEEEeCCEEEEecChhHHh
Q 001580 822 KILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTII--DCDRILLLDSGRVLEYDTPEELL 888 (1050)
Q Consensus 822 ~illLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~vtH~~~~~~--~~d~i~vl~~G~i~~~g~~~el~ 888 (1050)
++|||||||++||+.+...+++.|++..+ ++|+|++||+++.+. .||++++|++|++++.| +.|+.
T Consensus 124 ~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 124 DLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 99999999999999999999999998754 789999999999987 59999999999999999 44453
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=341.31 Aligned_cols=214 Identities=32% Similarity=0.525 Sum_probs=183.0
Q ss_pred EEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeEE------------eCcEE
Q 001580 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------RGTVA 109 (1050)
Q Consensus 42 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~------------~~~i~ 109 (1050)
++++|+++.|+...++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+... +..++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 478999999975334579999999999999999999999999999999999999998865321 23599
Q ss_pred EEecCCCCCcccHHHHhccCCCC-CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCE
Q 001580 110 YVPQVSWIFNATVRDNILFGSAF-EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 188 (1050)
Q Consensus 110 ~v~Q~~~l~~~TV~eni~~g~~~-~~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~v 188 (1050)
|++|++.++..||+||+.++... ...+.....+.+++.+.++.++.+..+..+....+|||||||||+|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999998878999999986432 23344445566677777777777777777788899999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhhcCEEEEEcCCeEeeccChhhhhcC
Q 001580 189 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 256 (1050)
Q Consensus 189 llLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 256 (1050)
+||||||++||+.+++++++.+.... +|+|+|++||+++++..||++++|++|++++.|+.+++...
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc
Confidence 99999999999999999999887665 78999999999999988899999999999999988777544
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=329.62 Aligned_cols=177 Identities=33% Similarity=0.532 Sum_probs=157.1
Q ss_pred EEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEEE
Q 001580 667 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 746 (1050)
Q Consensus 667 ~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v 746 (1050)
+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++..+++.++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence 47899999964 3699999999999999999999999999999999999999999999999999888887888889999
Q ss_pred cCCcccccccHHHhcccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 001580 747 PQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVL 826 (1050)
Q Consensus 747 ~Q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~illL 826 (1050)
|| +++..++.+++. ..+.+||||||||++||||++.+|++|||
T Consensus 79 ~q--------------------------~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~laral~~~p~llll 121 (180)
T cd03214 79 PQ--------------------------ALELLGLAHLAD-----------RPFNELSGGERQRVLLARALAQEPPILLL 121 (180)
T ss_pred HH--------------------------HHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 98 344444444332 34568999999999999999999999999
Q ss_pred eccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001580 827 DEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 882 (1050)
Q Consensus 827 DEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 882 (1050)
||||++||+.+.+.+.+.|+++.+ ++|+|++||+++++.. ||++++|++|++++.|
T Consensus 122 DEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 122 DEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999998754 7899999999999865 9999999999998653
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=384.28 Aligned_cols=239 Identities=17% Similarity=0.252 Sum_probs=197.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhcc-cC---CCC------CCCCCCCcEEEEeEEEEeCCCC--CCCceeeceEEeeC
Q 001580 2 FVVAWQVVNANVSLKRMEEFLLAEEKI-LL---PNP------PLTSGLPAISIRNGYFSWDSKA--ERPTLLNINLDIPV 69 (1050)
Q Consensus 2 ~~~i~~~~~a~~s~~Ri~~fl~~~e~~-~~---~~~------~~~~~~~~i~~~~~~f~~~~~~--~~~~L~~isl~i~~ 69 (1050)
...++.+.++++|++||.++++.++.. .. +.. +.......|+++|++|+|+.+. .+++|+|+||++++
T Consensus 288 ~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~ 367 (555)
T TIGR01194 288 VSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQ 367 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcC
Confidence 356788899999999999998642111 00 100 0011123599999999997532 24699999999999
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE------------EeCcEEEEecCCCCCcccHHHHhccCCCCCHHHH
Q 001580 70 GSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARY 137 (1050)
Q Consensus 70 G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~TV~eni~~g~~~~~~~~ 137 (1050)
|++++|+||||||||||+++|+|+++|++|.+.. ++..++||+|++.+|++|+++|.. ....+++.
T Consensus 368 G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~--~~~~~~~~ 445 (555)
T TIGR01194 368 GDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEG--EHASLDNA 445 (555)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccc--cchhHHHH
Confidence 9999999999999999999999999999887542 234599999999999999999952 23345667
Q ss_pred HHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHc-cccC
Q 001580 138 EKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-GELS 216 (1050)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~-~~~~ 216 (1050)
.++++.+++.+.++.+|+|++|. .+||||||||++|||||+.+|+++||||||++||+++++.+.+.+.+ ....
T Consensus 446 ~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~ 520 (555)
T TIGR01194 446 QQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQ 520 (555)
T ss_pred HHHHHHcCCchhhcccccccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhC
Confidence 78899999999999999999884 68999999999999999999999999999999999999999886653 3346
Q ss_pred CcEEEEeccCcchhhhcCEEEEEcCCeEeec
Q 001580 217 GKTRVLVTNQLHFLSQVDRIILVHEGMVKEE 247 (1050)
Q Consensus 217 g~t~ilvtH~~~~l~~~d~i~~l~~G~i~~~ 247 (1050)
|+|+|+|||+++.+..||+|++|++|++++.
T Consensus 521 ~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 521 GKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred CCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 8999999999999999999999999998863
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=332.86 Aligned_cols=201 Identities=54% Similarity=0.966 Sum_probs=177.1
Q ss_pred EEEEeEEEEeCCCCC--CCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeEEeCcEEEEecCCCCCc
Q 001580 42 ISIRNGYFSWDSKAE--RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFN 119 (1050)
Q Consensus 42 i~~~~~~f~~~~~~~--~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~ 119 (1050)
|+++|++|.|+.+.. +++|+++||++++|++++|+|+||||||||+++|+|+++|++|.+. +.+.|+|++|+|.+++
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~-~~g~i~~~~q~~~l~~ 79 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVS-VPGSIAYVSQEPWIQN 79 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEE-EcCEEEEEecCchhcc
Confidence 478999999974321 3799999999999999999999999999999999999999987754 5668999999999999
Q ss_pred ccHHHHhccCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcC
Q 001580 120 ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 199 (1050)
Q Consensus 120 ~TV~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD 199 (1050)
.|++||+.++.....++...+.+.+++.+.++..+.+..+.++....+||||||||++|||||+.+|+++||||||++||
T Consensus 80 ~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD 159 (204)
T cd03250 80 GTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVD 159 (204)
T ss_pred CcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 99999999875555555556677778888898888888888888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-ccccCCcEEEEeccCcchhhhcCEEEEEcCCe
Q 001580 200 AHVGRQVFDRCI-RGELSGKTRVLVTNQLHFLSQVDRIILVHEGM 243 (1050)
Q Consensus 200 ~~~~~~l~~~l~-~~~~~g~t~ilvtH~~~~l~~~d~i~~l~~G~ 243 (1050)
+.+.+++++.++ ....+|.|+|++||+++.+..+|++++|++|+
T Consensus 160 ~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 160 AHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999988654 34445899999999999988899999999884
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=332.59 Aligned_cols=182 Identities=29% Similarity=0.470 Sum_probs=160.5
Q ss_pred cEEEEEEEEEeCCC----CCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccc--cCCccEEEECCeecCCCChHH
Q 001580 665 SIKFEDVVLRYRPE----LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV--ELERGRILIDGFDIAKFGLMD 738 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~----~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~--~p~~G~i~~~g~~i~~~~~~~ 738 (1050)
.++++||+++|+.. ..++++|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 38999999999642 246999999999999999999999999999999999999 9999999999998864 35
Q ss_pred HhhheEEEcCCcccccc-cHHHhcccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHH
Q 001580 739 LRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 817 (1050)
Q Consensus 739 ~r~~i~~v~Q~~~lf~~-tv~~nl~~~~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAral 817 (1050)
+++.++|+||++.+|.. |+++|+.+.. . + ..||||||||++|||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~------------~--~-------------------~~LS~G~~qrv~laral 126 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAA------------K--L-------------------RGLSGGERKRVSIALEL 126 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHH------------H--h-------------------ccCCHHHHHHHHHHHHH
Confidence 67889999999988865 9999885310 0 0 06999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCch-hhhh-cCEEEEEeCCEEEEec
Q 001580 818 LRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN-TIID-CDRILLLDSGRVLEYD 882 (1050)
Q Consensus 818 l~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~-~~~~-~d~i~vl~~G~i~~~g 882 (1050)
+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++ .+.. ||++++|++|++++.|
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999875 4799999999997 5654 9999999999998754
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=340.71 Aligned_cols=214 Identities=33% Similarity=0.526 Sum_probs=184.1
Q ss_pred EEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeEE------------eCcEE
Q 001580 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------RGTVA 109 (1050)
Q Consensus 42 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~------------~~~i~ 109 (1050)
|+++|++++|+.. ++++|+++||++++|++++|+|+||||||||+++|+|+++|++|.+... +..++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999642 2479999999999999999999999999999999999999998865321 23599
Q ss_pred EEecCCCCCcccHHHHhccCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCE
Q 001580 110 YVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 188 (1050)
Q Consensus 110 ~v~Q~~~l~~~TV~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~v 188 (1050)
|++|++.++..||+||+.++.. .....+....+.+++.+.++.++.+..+..+....+|||||||||+|||||+.+|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999988899999998643 233445555666778888888877777778888899999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhhcCEEEEEcCCeEeeccChhhhhcCh
Q 001580 189 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNG 257 (1050)
Q Consensus 189 llLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 257 (1050)
+||||||++||+.+++.+.+.+.+.. +++|+|++||+++++..||++++|++|++++.|+++++....
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 227 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQG 227 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcC
Confidence 99999999999999999999887664 489999999999999889999999999999999888776543
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=383.11 Aligned_cols=235 Identities=24% Similarity=0.387 Sum_probs=187.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCC
Q 001580 2 FVVAWQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGE 81 (1050)
Q Consensus 2 ~~~i~~~~~a~~s~~Ri~~fl~~~e~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGs 81 (1050)
...++++.+++++++|+.+++..++....+.++..+....|+++|++|+|+. ++++|+|+||++++|++++|+|+|||
T Consensus 283 ~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGs 360 (547)
T PRK10522 283 VGALPTLLSAQVAFNKLNKLALAPYKAEFPRPQAFPDWQTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGS 360 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccccccccCcCceEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCC
Confidence 3567788899999999999986543221111111111235999999999973 34799999999999999999999999
Q ss_pred cHHHHHHHHHcCCCCCCCCeeE------------EeCcEEEEecCCCCCcccHHHHhccCCCCCHHHHHHHHHHhCcHHH
Q 001580 82 GKTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHD 149 (1050)
Q Consensus 82 GKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~TV~eni~~g~~~~~~~~~~~~~~~~l~~~ 149 (1050)
|||||+++|+|+++|++|.+.. ++..|+||+|+|.+|++|+++| +...++++..+.++.+++...
T Consensus 361 GKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~ 437 (547)
T PRK10522 361 GKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHK 437 (547)
T ss_pred CHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchh
Confidence 9999999999999999886532 2346999999999999999998 333444555566666666554
Q ss_pred HhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccc-cCCcEEEEeccCcc
Q 001580 150 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLH 228 (1050)
Q Consensus 150 ~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~-~~g~t~ilvtH~~~ 228 (1050)
... +++. .+|.+||||||||++|||||+++|+++|||||||+||+++++.+.+.+.+.. ..++|+|+|||+++
T Consensus 438 ~~~-~~~~-----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~ 511 (547)
T PRK10522 438 LEL-EDGR-----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH 511 (547)
T ss_pred hhc-cccC-----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH
Confidence 432 2111 1378999999999999999999999999999999999999999988776443 24799999999999
Q ss_pred hhhhcCEEEEEcCCeEeec
Q 001580 229 FLSQVDRIILVHEGMVKEE 247 (1050)
Q Consensus 229 ~l~~~d~i~~l~~G~i~~~ 247 (1050)
.+..+|+|++|++|++++.
T Consensus 512 ~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 512 YFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHhCCEEEEEECCEEEEe
Confidence 9999999999999999874
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=359.91 Aligned_cols=203 Identities=28% Similarity=0.419 Sum_probs=172.1
Q ss_pred cEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE----------EeCcEEE
Q 001580 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 110 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~ 110 (1050)
.|+++|++++|+. ++++|+|+||++++|++++|+|||||||||||++|+|+.+|++|.+.. .++.|||
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 80 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAM 80 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 5899999999941 357999999999999999999999999999999999999999886542 1245999
Q ss_pred EecCCCCC-cccHHHHhccCCCC---CH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHH
Q 001580 111 VPQVSWIF-NATVRDNILFGSAF---EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 182 (1050)
Q Consensus 111 v~Q~~~l~-~~TV~eni~~g~~~---~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL 182 (1050)
|+|++.+| ..||+|||.|+... .. .+....++..++.+..+..+ .+|||||||||+|||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalARAL 149 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGRAI 149 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 99999998 67999999987431 11 23445566666665554444 58999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhhhcC
Q 001580 183 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 256 (1050)
Q Consensus 183 ~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 256 (1050)
+.+|++|||||||++||+.+++.+.+.+.+..+ .|.|+|+||||++++.. +|+|++|++|++++.|+++++.++
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 999999999999999999999999998877654 48999999999998764 799999999999999999988654
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-38 Score=339.25 Aligned_cols=218 Identities=32% Similarity=0.558 Sum_probs=187.0
Q ss_pred EEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeEE------------eCcEE
Q 001580 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------RGTVA 109 (1050)
Q Consensus 42 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~------------~~~i~ 109 (1050)
++++|++++|+. ++++|+|+||+|++|++++|+|+||||||||+++|+|+.+|++|.+... +..++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 478999999963 2569999999999999999999999999999999999999998865431 23499
Q ss_pred EEecCCCCCcccHHHHhccCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCE
Q 001580 110 YVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 188 (1050)
Q Consensus 110 ~v~Q~~~l~~~TV~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~v 188 (1050)
|++|++++++.||+||+.++.. .........++.+++.+.++.++.+..+.++.+..+|||||||||+|||||+.+|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999998999999988643 223334455666778777888888888888888899999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhhcCEEEEEcCCeEeeccChhhhhcChHHHHH
Q 001580 189 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQK 262 (1050)
Q Consensus 189 llLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 262 (1050)
+||||||++||+.+...+.+.+..... |+|+|++||+++++..||++++|++|++++.|+.+++......|+.
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~~ 231 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAE 231 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHHH
Confidence 999999999999999999998876655 8999999999999988999999999999999998887665444443
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=327.22 Aligned_cols=215 Identities=24% Similarity=0.485 Sum_probs=187.4
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheE
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 744 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 744 (1050)
.+++++|+++|++. .|++|+||.++||+++|++|||||||||++++|+|+++|++|+|.++|.+++. ..+.+||
T Consensus 2 ~L~ie~vtK~Fg~k--~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rIG 75 (300)
T COG4152 2 ALEIEGVTKSFGDK--KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRIG 75 (300)
T ss_pred ceEEecchhccCce--eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhcc
Confidence 38999999999754 79999999999999999999999999999999999999999999999998864 5678999
Q ss_pred EEcCCcccccc-cHHHhcccCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccC
Q 001580 745 IIPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 820 (1050)
Q Consensus 745 ~v~Q~~~lf~~-tv~~nl~~~~~---~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~ 820 (1050)
|+|.+..|+.. ||.|.|.++.. ....++. ..+..|++++. +--...+....||-|++|++.+..+++++
T Consensus 76 yLPEERGLy~k~tv~dql~yla~LkGm~~~e~~-----~~~~~wLer~~--i~~~~~~kIk~LSKGnqQKIQfisaviHe 148 (300)
T COG4152 76 YLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQ-----KKLQAWLERLE--IVGKKTKKIKELSKGNQQKIQFISAVIHE 148 (300)
T ss_pred cChhhhccCccCcHHHHHHHHHHhcCCcHHHHH-----HHHHHHHHhcc--ccccccchHHHhhhhhhHHHHHHHHHhcC
Confidence 99999999965 99999876543 2333333 33556777753 33344566678999999999999999999
Q ss_pred CCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 001580 821 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 892 (1050)
Q Consensus 821 p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~ 892 (1050)
|+++|||||+|||||.+.+.+.+.+.++. +|.|||+.||+|+-++. ||+++.|++|+.|-+|+.++..+..+
T Consensus 149 PeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~G 222 (300)
T COG4152 149 PELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222 (300)
T ss_pred CCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcC
Confidence 99999999999999999999999999876 58999999999999988 99999999999999999999987543
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=323.84 Aligned_cols=206 Identities=28% Similarity=0.400 Sum_probs=172.3
Q ss_pred CcEEEEeEEEEeCCCC-CCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeEE-------------e
Q 001580 40 PAISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------------R 105 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~-~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~-------------~ 105 (1050)
+.++++|+++.|+.+. ..++|++|||+|.+||.+||+|+||||||||.++|+|+.+|+.|.+..- .
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 4689999999997432 1259999999999999999999999999999999999999998876431 3
Q ss_pred CcEEEEecCCCC---CcccHHHHhccCCCC-----CHHHHHHHHHHhCcHHH-HhcCCCCCcccccCCCCCCCHHHHHHH
Q 001580 106 GTVAYVPQVSWI---FNATVRDNILFGSAF-----EPARYEKAIDVTSLQHD-LDLLPGGDVTEIGERGVNISGGQKQRV 176 (1050)
Q Consensus 106 ~~i~~v~Q~~~l---~~~TV~eni~~g~~~-----~~~~~~~~~~~~~l~~~-~~~~~~g~~t~vg~~g~~LSGGqrqRv 176 (1050)
+.|-+|+|||.- +..||++.|.-+... ...+..++++..++... ++..| .+|||||||||
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRi 150 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRI 150 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHH
Confidence 459999999963 356888888643221 12345566777777654 44444 58999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhhh
Q 001580 177 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLS 254 (1050)
Q Consensus 177 ~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 254 (1050)
||||||..+|++||||||||+||+..+..|++.+.+..+ ++-|.|+||||+..+.+ ||||++|++|.+++.++.+++.
T Consensus 151 aIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~ 230 (252)
T COG1124 151 AIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230 (252)
T ss_pred HHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhh
Confidence 999999999999999999999999999999998877643 58899999999999987 7999999999999999999987
Q ss_pred cC
Q 001580 255 NN 256 (1050)
Q Consensus 255 ~~ 256 (1050)
+.
T Consensus 231 ~~ 232 (252)
T COG1124 231 SH 232 (252)
T ss_pred cC
Confidence 66
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=328.72 Aligned_cols=172 Identities=29% Similarity=0.476 Sum_probs=155.5
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChH-HHhhhe
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM-DLRKIL 743 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~-~~r~~i 743 (1050)
.++++|++++| +++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++. ..|+.+
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 38999999998 79999999999999999999999999999999999999999999999999887643 467789
Q ss_pred EEEcCCc---ccc-cccHHHhcccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHcc
Q 001580 744 GIIPQSP---VLF-SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 819 (1050)
Q Consensus 744 ~~v~Q~~---~lf-~~tv~~nl~~~~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~ 819 (1050)
+|+||++ .++ ..|+++|+.+... ||||||||++||||++.
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~~ 121 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLAR 121 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHcc
Confidence 9999995 344 4699999864210 99999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEE
Q 001580 820 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRV 878 (1050)
Q Consensus 820 ~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i 878 (1050)
+|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++++.. ||++++|++|++
T Consensus 122 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 122 DPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999864 47899999999999987 999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-38 Score=338.01 Aligned_cols=211 Identities=29% Similarity=0.495 Sum_probs=183.3
Q ss_pred cEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeEE------------eCcE
Q 001580 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------RGTV 108 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~------------~~~i 108 (1050)
.|+++|++|+|+. .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+..- +..+
T Consensus 2 ~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 3789999999963 2469999999999999999999999999999999999999998865321 2359
Q ss_pred EEEecCCCCCcccHHHHhccCCCC-CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 001580 109 AYVPQVSWIFNATVRDNILFGSAF-EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 187 (1050)
Q Consensus 109 ~~v~Q~~~l~~~TV~eni~~g~~~-~~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~ 187 (1050)
+|++|++.++..||+||+.++... ...+....++.+++.+.++.++.+..+.++....+|||||||||+|||||+.+|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 999999998877999999986432 3345555667778888888888777777888889999999999999999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhhcCEEEEEcCCeEeeccChhhhh
Q 001580 188 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLS 254 (1050)
Q Consensus 188 vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 254 (1050)
++||||||++||+.+++++++.+.... +|+|+|++||+++++..||++++|++|++++.|+.+++.
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 225 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELL 225 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 999999999999999999999887664 589999999999999889999999999999888877664
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=336.79 Aligned_cols=193 Identities=25% Similarity=0.394 Sum_probs=160.4
Q ss_pred EEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCCh----HHHhhhe
Q 001580 668 FEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL----MDLRKIL 743 (1050)
Q Consensus 668 ~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~----~~~r~~i 743 (1050)
++||++.|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..++. ...++.+
T Consensus 1 i~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGDK--IILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECCE--EEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 46899999643 69999999999999999999999999999999999999999999999999765432 2356789
Q ss_pred EEEcCCccccc-ccHHHhcccCCC---CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001580 744 GIIPQSPVLFS-GTVRFNLDPFSE---HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 815 (1050)
Q Consensus 744 ~~v~Q~~~lf~-~tv~~nl~~~~~---~~----~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAr 815 (1050)
+|++|++.+|. .|+++|+.+... .. .+++.++++.. |++........+||||||||++|||
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~lS~G~~qr~~lar 147 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKV-----------GLNLKLKQKIYELSGGEQQRVALAR 147 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CchhhhcCChhhCCHHHHHHHHHHH
Confidence 99999999887 599999975211 11 12233333333 3444445556789999999999999
Q ss_pred HHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhhcCEEEEE
Q 001580 816 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLL 873 (1050)
Q Consensus 816 all~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~vl 873 (1050)
||+++|++|||||||++||+.+.+.+.+.|+++. .+.|+|++||+++.+..||++++|
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 148 AILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999999999999865 378999999999987779999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-38 Score=376.81 Aligned_cols=215 Identities=25% Similarity=0.416 Sum_probs=181.6
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHh-hhe
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR-KIL 743 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r-~~i 743 (1050)
.++++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...++..++ +.+
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 11 LLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred eEEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 4999999999964 3699999999999999999999999999999999999999999999999999877766654 469
Q ss_pred EEEcCCcccccc-cHHHhcccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 001580 744 GIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 822 (1050)
Q Consensus 744 ~~v~Q~~~lf~~-tv~~nl~~~~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~ 822 (1050)
||+||++.++.. |+.+|+.+...... +.. ..+.++++. .|++........+|||||||||+|||||+.+|+
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~-~~~-----~~~~~~l~~--~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~ 160 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQ-ASM-----QKMKQLLAA--LGCQLDLDSSAGSLEVADRQIVEILRGLMRDSR 160 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccch-HHH-----HHHHHHHHH--cCCCccccCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 999999988875 99999976432111 111 112233333 244444555667899999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001580 823 ILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889 (1050)
Q Consensus 823 illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 889 (1050)
||||||||++||+.+...+.+.|+++. +++|||+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 161 lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 161 ILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 999999999999999999999998864 47899999999999876 99999999999999999998764
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=357.49 Aligned_cols=204 Identities=25% Similarity=0.378 Sum_probs=170.9
Q ss_pred CCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE----------EeCcE
Q 001580 39 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTV 108 (1050)
Q Consensus 39 ~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i 108 (1050)
++.|+++|++++|+ ++++|+|+||++++||+++|+|||||||||||++|+|+++|++|.+.. .++.|
T Consensus 4 ~~~l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~i 80 (351)
T PRK11432 4 KNFVVLKNITKRFG---SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDI 80 (351)
T ss_pred CcEEEEEeEEEEEC---CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 35799999999996 356999999999999999999999999999999999999999886542 12469
Q ss_pred EEEecCCCCC-cccHHHHhccCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHH
Q 001580 109 AYVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 180 (1050)
Q Consensus 109 ~~v~Q~~~l~-~~TV~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAr 180 (1050)
|||+|++.+| ..||+|||.|+.. ... ++....++..++.+..+. ...+|||||||||+|||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r-----------~~~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDR-----------YVDQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHHHH
Confidence 9999999988 5799999998742 111 233344455555443333 34689999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhhhcC
Q 001580 181 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 256 (1050)
Q Consensus 181 aL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 256 (1050)
||+.+|++|||||||++||+..+.++.+.+.+..+ .|.|+|+||||++++.. +|+|++|++|++++.|+++++...
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999998876644 48999999999999755 799999999999999999887654
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=341.49 Aligned_cols=201 Identities=27% Similarity=0.430 Sum_probs=164.8
Q ss_pred EEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE---------------EeC
Q 001580 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IRG 106 (1050)
Q Consensus 42 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------~~~ 106 (1050)
|+++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+.
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 478999999963 57999999999999999999999999999999999999999876532 123
Q ss_pred cEEEEecCCCCCc-ccHHHHhccCCC----CCHH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHH
Q 001580 107 TVAYVPQVSWIFN-ATVRDNILFGSA----FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 177 (1050)
Q Consensus 107 ~i~~v~Q~~~l~~-~TV~eni~~g~~----~~~~----~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~ 177 (1050)
.|+|++|++.++. .||+||+.++.. .... +....++..++.... .....+|||||||||+
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAE-----------DLYPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHH
Confidence 5999999998874 699999987521 1221 222334444443222 2334689999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhhhc
Q 001580 178 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 255 (1050)
Q Consensus 178 LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 255 (1050)
|||||+.+|+++||||||++||+.++..+++.+.+... .|+|+|+||||++++.. ||++++|++|++++.|+++++..
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999999999998877654 48999999999999875 79999999999999999887654
Q ss_pred C
Q 001580 256 N 256 (1050)
Q Consensus 256 ~ 256 (1050)
.
T Consensus 227 ~ 227 (235)
T cd03261 227 S 227 (235)
T ss_pred C
Confidence 3
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=340.07 Aligned_cols=223 Identities=23% Similarity=0.369 Sum_probs=191.8
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE------------EeCc
Q 001580 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 107 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 107 (1050)
..|+++|++++|+.. .+.+|+++||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..
T Consensus 18 ~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~ 96 (257)
T cd03288 18 GEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSR 96 (257)
T ss_pred ceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhh
Confidence 459999999999742 357999999999999999999999999999999999999999886543 1335
Q ss_pred EEEEecCCCCCcccHHHHhccCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 001580 108 VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 187 (1050)
Q Consensus 108 i~~v~Q~~~l~~~TV~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~ 187 (1050)
|+|++|+|++++.||+||+..........+....+..++.+.++.++.+..+.++..+.+||||||||++|||||+.+|+
T Consensus 97 i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 176 (257)
T cd03288 97 LSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSS 176 (257)
T ss_pred EEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999998889999997653333445556667778888888888888888999999999999999999999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhhcCEEEEEcCCeEeeccChhhhhcC-hHHHHHHH
Q 001580 188 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN-GELFQKLM 264 (1050)
Q Consensus 188 vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~l~ 264 (1050)
++||||||++||+.++..+++.+.+. .++.|+|++||+++.+..||+|++|++|++++.|+++++... .+.|+.++
T Consensus 177 llllDEPt~gLD~~~~~~l~~~l~~~-~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 253 (257)
T cd03288 177 ILIMDEATASIDMATENILQKVVMTA-FADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253 (257)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHh-cCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHH
Confidence 99999999999999999999877654 358999999999999988999999999999999999888654 34455544
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-38 Score=342.14 Aligned_cols=217 Identities=19% Similarity=0.298 Sum_probs=175.3
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhcc--ccCCccEEEECCeecCCCChHHHhh-
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI--VELERGRILIDGFDIAKFGLMDLRK- 741 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~--~~p~~G~i~~~g~~i~~~~~~~~r~- 741 (1050)
.++++|+++.|++. ++|+|+||+|++||++||+|+||||||||+++|+|+ ++|++|+|.++|.++...++...++
T Consensus 7 ~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 7 ILEIKNLHASVNEN--EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred eEEEEeEEEEeCCE--EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 48999999999643 699999999999999999999999999999999998 6899999999999998877665554
Q ss_pred heEEEcCCcccccc-cHHHhcccCCC----C---CHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCC-CCChhHHHHH
Q 001580 742 ILGIIPQSPVLFSG-TVRFNLDPFSE----H---SDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGE-NFSVGQRQLL 811 (1050)
Q Consensus 742 ~i~~v~Q~~~lf~~-tv~~nl~~~~~----~---~~~~~~~~l~~~~~~~~i~~~p~gl~-t~v~~~~~-~LSgGq~qrl 811 (1050)
.++|+||++.+|.+ |+.+|+.+... . .+.+..+.. ..+.+.++.+ |+. +..+.... .||||||||+
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~--~l~~~~~~~~~~~~LSgG~~qrv 160 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFL--EIINEKLKLV--GMDPSFLSRNVNEGFSGGEKKRN 160 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHH--HHHHHHHHHc--CCchhhhccccccCCCHHHHHHH
Confidence 48999999998876 88888753211 0 000000000 1122333332 343 33445444 5999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh--cCEEEEEeCCEEEEecChhHH
Q 001580 812 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID--CDRILLLDSGRVLEYDTPEEL 887 (1050)
Q Consensus 812 ~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~--~d~i~vl~~G~i~~~g~~~el 887 (1050)
+|||||+.+|+||||||||++||+.+.+.+.+.|+++. .++|||++||+++.+.. ||++++|++|++++.|+++..
T Consensus 161 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 161 EILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChhhh
Confidence 99999999999999999999999999999999999875 47999999999999875 899999999999999998843
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-38 Score=341.38 Aligned_cols=209 Identities=23% Similarity=0.379 Sum_probs=173.4
Q ss_pred EEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEEE
Q 001580 667 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 746 (1050)
Q Consensus 667 ~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v 746 (1050)
+++||++. .+|+|+||+|++||++||+||||||||||+++|+|+++ .+|+|.++|.++...++..+++.++|+
T Consensus 2 ~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 2 QLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred cccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEe
Confidence 45677774 27999999999999999999999999999999999986 499999999999888877888889999
Q ss_pred cCCcccc-cccHHHhcccCCCC--CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHcc----
Q 001580 747 PQSPVLF-SGTVRFNLDPFSEH--SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR---- 819 (1050)
Q Consensus 747 ~Q~~~lf-~~tv~~nl~~~~~~--~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~---- 819 (1050)
||++.++ ..|+++|+.+.... ...+. ...+.+.++.+ |++.........||||||||++|||||+.
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~ 147 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAV-----ASALNEVAEAL--GLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPD 147 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCCCcHHH-----HHHHHHHHHHc--CCHhHhcCCcccCCHHHHHHHHHHHHHhccccc
Confidence 9998654 56999999754221 11111 11223344443 45555566677899999999999999997
Q ss_pred ---CCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001580 820 ---RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889 (1050)
Q Consensus 820 ---~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 889 (1050)
+|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 148 ~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 148 INPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred cCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 679999999999999999999999999875 47899999999998866 99999999999999999988854
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=333.91 Aligned_cols=206 Identities=27% Similarity=0.413 Sum_probs=181.9
Q ss_pred EEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE------------EeCcEE
Q 001580 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 109 (1050)
Q Consensus 42 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 109 (1050)
|+++|++|+|+.. ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..++
T Consensus 3 l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (221)
T cd03244 3 IEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRIS 81 (221)
T ss_pred EEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEE
Confidence 7899999999732 357999999999999999999999999999999999999999886532 134599
Q ss_pred EEecCCCCCcccHHHHhccCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEE
Q 001580 110 YVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 189 (1050)
Q Consensus 110 ~v~Q~~~l~~~TV~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vl 189 (1050)
|++|++.+++.||+||+.+.......+....++..++.+.++.++.+..+..+..+.+||||||||++|||||+.+|+++
T Consensus 82 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ll 161 (221)
T cd03244 82 IIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKIL 161 (221)
T ss_pred EECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999998888999999876544555666677788888888888888888888889999999999999999999999999
Q ss_pred EEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhhcCEEEEEcCCeEeeccC
Q 001580 190 IFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 249 (1050)
Q Consensus 190 lLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~~d~i~~l~~G~i~~~g~ 249 (1050)
||||||++||+.+++++++.+.+.. ++.|+|++||+++++..+|++++|++|++++.|+
T Consensus 162 llDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 162 VLDEATASVDPETDALIQKTIREAF-KDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 9999999999999999999887654 4689999999999998899999999999987764
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=341.62 Aligned_cols=194 Identities=27% Similarity=0.405 Sum_probs=158.5
Q ss_pred CceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEEEc-CCccccc-ccHH
Q 001580 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIP-QSPVLFS-GTVR 758 (1050)
Q Consensus 681 ~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~-Q~~~lf~-~tv~ 758 (1050)
++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...++++++|+| |++.++. .|++
T Consensus 35 ~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv~ 113 (236)
T cd03267 35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPVI 113 (236)
T ss_pred eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcHH
Confidence 699999999999999999999999999999999999999999999999987543 345677899998 5566764 5999
Q ss_pred HhcccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCH
Q 001580 759 FNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 835 (1050)
Q Consensus 759 ~nl~~~~---~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~illLDEpts~LD~ 835 (1050)
+|+.+.. .....+..+. +...++. .|++.........||||||||++|||||+.+|++|||||||++||+
T Consensus 114 e~l~~~~~~~~~~~~~~~~~-----~~~~l~~--~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~ 186 (236)
T cd03267 114 DSFYLLAAIYDLPPARFKKR-----LDELSEL--LDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDV 186 (236)
T ss_pred HHHHHHHHHcCCCHHHHHHH-----HHHHHHH--cCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 9985421 1122222111 1223333 2444444555678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001580 836 RTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 882 (1050)
Q Consensus 836 ~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 882 (1050)
.+.+.+.+.|+++.+ ++|+|++||+++++.. ||++++|++|++++.|
T Consensus 187 ~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 187 VAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999998743 6899999999999876 9999999999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=329.54 Aligned_cols=181 Identities=26% Similarity=0.395 Sum_probs=158.8
Q ss_pred cEEEEEEEEEeCCC--CCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccc--cCCccEEEECCeecCCCChHHHh
Q 001580 665 SIKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV--ELERGRILIDGFDIAKFGLMDLR 740 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~--~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~--~p~~G~i~~~g~~i~~~~~~~~r 740 (1050)
.++++|+++.|++. .+++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|.++. ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 38999999999641 146999999999999999999999999999999999986 489999999999885 4567
Q ss_pred hheEEEcCCcccccc-cHHHhcccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHcc
Q 001580 741 KILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 819 (1050)
Q Consensus 741 ~~i~~v~Q~~~lf~~-tv~~nl~~~~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~ 819 (1050)
++++|++|++.+|.. |+++|+.+.. . + . +||||||||++||||++.
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~---------~-----~----~---------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSA---------L-----L----R---------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHH---------H-----H----h---------------cCCHHHhHHHHHHHHHhc
Confidence 889999999988875 9999986310 0 0 0 699999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchh-h-hhcCEEEEEeC-CEEEEec
Q 001580 820 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT-I-IDCDRILLLDS-GRVLEYD 882 (1050)
Q Consensus 820 ~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~-~-~~~d~i~vl~~-G~i~~~g 882 (1050)
+|++|||||||++||+.+...+++.|+++. .++|+|++||+++. + ..||+|++|++ |++++.|
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999999865 47899999999984 5 45999999998 9998865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=317.41 Aligned_cols=159 Identities=30% Similarity=0.538 Sum_probs=147.6
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChH-HHhhheE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM-DLRKILG 744 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~-~~r~~i~ 744 (1050)
++++|++++|++. ++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++. ..++.++
T Consensus 1 l~~~~l~~~~~~~--~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRFGGV--KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CEEEEEEEEECCe--EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence 4789999999653 699999999999999999999999999999999999999999999999999877654 4567899
Q ss_pred EEcCCcccccccHHHhcccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCEE
Q 001580 745 IIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 824 (1050)
Q Consensus 745 ~v~Q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~il 824 (1050)
|+|| ||||||||++||||++++|++|
T Consensus 79 ~~~q------------------------------------------------------LS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 79 MVYQ------------------------------------------------------LSVGERQMVEIARALARNARLL 104 (163)
T ss_pred EEEe------------------------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 9998 9999999999999999999999
Q ss_pred EEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEE
Q 001580 825 VLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 880 (1050)
Q Consensus 825 lLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~ 880 (1050)
||||||++||+.+++.+.+.|+++. ++.|+|++||+++.+.. ||++++|++|++++
T Consensus 105 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999874 47899999999998876 99999999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-38 Score=319.08 Aligned_cols=163 Identities=33% Similarity=0.432 Sum_probs=148.6
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
|+++|++++|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++++|
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 68 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLF 68 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEE
Confidence 4689999999643 36999999999999999999999999999999999999999999999873 57999
Q ss_pred EcCCcccccccHHHhcccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCEEE
Q 001580 746 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 825 (1050)
Q Consensus 746 v~Q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~ill 825 (1050)
+||++.+++.|+++|+.+. ....||||||||++||||++++|++||
T Consensus 69 ~~q~~~~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~ll 114 (166)
T cd03223 69 LPQRPYLPLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVF 114 (166)
T ss_pred ECCCCccccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999998888999998642 135799999999999999999999999
Q ss_pred EeccCcCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCC
Q 001580 826 LDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSG 876 (1050)
Q Consensus 826 LDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G 876 (1050)
|||||++||+.+.+.+.+.|++. ++|+|++||+++....||++++|++|
T Consensus 115 lDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 115 LDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred EECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCC
Confidence 99999999999999999999885 68999999999877679999999865
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=347.59 Aligned_cols=207 Identities=29% Similarity=0.463 Sum_probs=169.6
Q ss_pred cEEEEeEEEEeCCCC--CCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeEE--------------
Q 001580 41 AISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------------- 104 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~--~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~-------------- 104 (1050)
.|+++|++|+|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+...
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 388999999997432 2369999999999999999999999999999999999999998865331
Q ss_pred ----------------------eCcEEEEecCC--CCCcccHHHHhccCCC---CCH----HHHHHHHHHhCcHHHHhcC
Q 001580 105 ----------------------RGTVAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLL 153 (1050)
Q Consensus 105 ----------------------~~~i~~v~Q~~--~l~~~TV~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~ 153 (1050)
+..||||+|+| .++..||+|||.|+.. ... ++..+.++..++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~---- 157 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDES---- 157 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChh----
Confidence 23489999986 5677899999998732 222 223344555555311
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-
Q 001580 154 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ- 232 (1050)
Q Consensus 154 ~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~- 232 (1050)
..+....+|||||||||+|||||+.+|++|||||||++||+.++..+++.+......|+|+|+||||++++..
T Consensus 158 ------~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 231 (305)
T PRK13651 158 ------YLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEW 231 (305)
T ss_pred ------hhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHh
Confidence 1233456899999999999999999999999999999999999999999887665568999999999998764
Q ss_pred cCEEEEEcCCeEeeccChhhhhcCh
Q 001580 233 VDRIILVHEGMVKEEGTFEDLSNNG 257 (1050)
Q Consensus 233 ~d~i~~l~~G~i~~~g~~~~l~~~~ 257 (1050)
||||++|++|++++.|+++++....
T Consensus 232 adrv~vl~~G~i~~~g~~~~~~~~~ 256 (305)
T PRK13651 232 TKRTIFFKDGKIIKDGDTYDILSDN 256 (305)
T ss_pred CCEEEEEECCEEEEECCHHHHhcCH
Confidence 8999999999999999998877654
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-38 Score=350.86 Aligned_cols=202 Identities=25% Similarity=0.404 Sum_probs=167.6
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE-----------EeCcE
Q 001580 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTV 108 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i 108 (1050)
..|+++|++|+|+ ++.+|+||||+|++|+++||+||||||||||+++|+|+++|++|.+.. .+..|
T Consensus 6 ~~i~i~~l~k~~~---~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYG---DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRV 82 (306)
T ss_pred ceEEEEeEEEEEC---CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcE
Confidence 4699999999996 357999999999999999999999999999999999999999886543 12459
Q ss_pred EEEecCCCCC-cccHHHHhccC-CC--CCHH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHH
Q 001580 109 AYVPQVSWIF-NATVRDNILFG-SA--FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 180 (1050)
Q Consensus 109 ~~v~Q~~~l~-~~TV~eni~~g-~~--~~~~----~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAr 180 (1050)
|||||++.++ ..||+||+.+. .. .... +....++..++.... .....+||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKA-----------DAKVGELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHh-----------cCchhhCCHHHHHHHHHHH
Confidence 9999999887 68999999752 11 1111 222333444433222 2234689999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhhhc
Q 001580 181 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 255 (1050)
Q Consensus 181 aL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 255 (1050)
||+++|++++|||||+||||.+++++++.+.+...+|+|+|++||+++++.. ||||++|++|++++.|+++++..
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999887766568999999999999976 89999999999999999988753
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=336.41 Aligned_cols=202 Identities=25% Similarity=0.356 Sum_probs=163.4
Q ss_pred ceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccC----CccEEEECCeecCCCChHHHhhheEEEcCCcc-cc-c-
Q 001580 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL----ERGRILIDGFDIAKFGLMDLRKILGIIPQSPV-LF-S- 754 (1050)
Q Consensus 682 ~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p----~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~-lf-~- 754 (1050)
+++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... ...++.++|+||++. .| .
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57899999999999999999999999999999999999 899999999998653 223467999999995 34 3
Q ss_pred ccHHHhcccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcc---hhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEec
Q 001580 755 GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD---AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 828 (1050)
Q Consensus 755 ~tv~~nl~~~~---~~~~~~~~~~l~~~~~~~~i~~~p~gl~---t~v~~~~~~LSgGq~qrl~lArall~~p~illLDE 828 (1050)
.|+.+|+.+.. ....... ...+.+.++.+ |++ +.....+..||||||||++||||++++|+||||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDE 151 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQA-----RALILEALEAV--GLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADE 151 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHH-----HHHHHHHHHHc--CCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 48888874211 0111110 01122333332 333 45566678899999999999999999999999999
Q ss_pred cCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 001580 829 ATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 892 (1050)
Q Consensus 829 pts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~ 892 (1050)
||++||+.+++.+.+.|+++.+ ++|||++||+++++.. ||++++|++|++++.|+++++.....
T Consensus 152 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 218 (230)
T TIGR02770 152 PTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPK 218 (230)
T ss_pred CccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcC
Confidence 9999999999999999998653 7899999999999976 99999999999999999999976543
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-38 Score=355.94 Aligned_cols=203 Identities=29% Similarity=0.421 Sum_probs=170.9
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE----------EeCcEE
Q 001580 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVA 109 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~ 109 (1050)
+.|+++|++++|+. +.+|+|+||++++|++++|+|||||||||||++|+|+.+|++|.+.. .++.||
T Consensus 3 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig 79 (353)
T TIGR03265 3 PYLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYG 79 (353)
T ss_pred cEEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 46999999999963 56999999999999999999999999999999999999999886543 124599
Q ss_pred EEecCCCCC-cccHHHHhccCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHH
Q 001580 110 YVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 181 (1050)
Q Consensus 110 ~v~Q~~~l~-~~TV~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAra 181 (1050)
||+|++.+| ..||+||+.|+.. .+. .+..+.++..++.+..+ ....+|||||||||+||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~-----------~~~~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSER-----------KYPGQLSGGQQQRVALARA 148 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhh-----------CChhhCCHHHHHHHHHHHH
Confidence 999999988 6899999998732 111 23344455555544333 3446899999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhhhcC
Q 001580 182 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 256 (1050)
Q Consensus 182 L~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 256 (1050)
|+.+|+++||||||++||+.+++++.+.+.+..+ .|.|+|+||||++++.. +|+|++|++|++++.|+++++..+
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~ 225 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999998877654 48999999999999765 799999999999999999888754
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=375.55 Aligned_cols=216 Identities=22% Similarity=0.344 Sum_probs=181.2
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHH-hhhe
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKIL 743 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~-r~~i 743 (1050)
.++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...++... ++.+
T Consensus 5 ~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 5 YISMAGIGKSFGPV--HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred eEEEeeeEEEcCCe--EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 38999999999643 69999999999999999999999999999999999999999999999999987776543 4579
Q ss_pred EEEcCCcccccc-cHHHhcccCCC----C------CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001580 744 GIIPQSPVLFSG-TVRFNLDPFSE----H------SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 812 (1050)
Q Consensus 744 ~~v~Q~~~lf~~-tv~~nl~~~~~----~------~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~ 812 (1050)
+|+||++.+|.. |+++|+.+... . ...+.. ..+.+.++.+ |+.........+||||||||++
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv~ 155 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMR-----VRAAMMLLRV--GLKVDLDEKVANLSISHKQMLE 155 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHH-----HHHHHHHHHc--CCCCCcccchhhCCHHHHHHHH
Confidence 999999988865 99999964311 0 111111 1233344443 4444455666789999999999
Q ss_pred HHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001580 813 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889 (1050)
Q Consensus 813 lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 889 (1050)
|||||+.+|+||||||||++||+.+...+.+.|+++. .++|||+|||+++++.. ||+|++|++|+++..|+++++..
T Consensus 156 ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (510)
T PRK09700 156 IAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN 234 (510)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCH
Confidence 9999999999999999999999999999999999864 47899999999999977 99999999999999999988753
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=344.39 Aligned_cols=206 Identities=26% Similarity=0.382 Sum_probs=172.0
Q ss_pred cEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE------------EeCcE
Q 001580 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 108 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 108 (1050)
.|+++|++++|+....+++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+.. .++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 589999999997433356999999999999999999999999999999999999999886532 12358
Q ss_pred EEEecCCC--CCcccHHHHhccCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHH
Q 001580 109 AYVPQVSW--IFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 179 (1050)
Q Consensus 109 ~~v~Q~~~--l~~~TV~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LA 179 (1050)
|||+|+|. ++..||+|||.|+.. .+. ++...+++..++.+..+.. ..+|||||||||+||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKERE-----------PARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHHHHHH
Confidence 99999984 457899999998632 122 2344556666665544433 358999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhhcCEEEEEcCCeEeeccChhhhhcCh
Q 001580 180 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNG 257 (1050)
Q Consensus 180 raL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 257 (1050)
|||+.+|++|||||||++||+.+++.+++.+.+... .|+|+|++||+++++..||+|++|++|+++..|+++++....
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRG 231 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcCh
Confidence 999999999999999999999999999998877654 489999999999998779999999999999999988876554
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=328.16 Aligned_cols=194 Identities=24% Similarity=0.332 Sum_probs=164.7
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
++++|+++.|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.... ..++++++|
T Consensus 1 l~i~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDGR--ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCCc--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEE
Confidence 4689999999653 6999999999999999999999999999999999999999999999999986543 467889999
Q ss_pred EcCCccccc-ccHHHhcccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 001580 746 IPQSPVLFS-GTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 823 (1050)
Q Consensus 746 v~Q~~~lf~-~tv~~nl~~~~~-~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~i 823 (1050)
+||++.++. .|+++|+.+... ..++++.++++..++.++. .....+||||||||++||||++++|++
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFE-----------DRPVAQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhh-----------cCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999998764 699999976432 2344556666666554332 233467999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEE
Q 001580 824 LVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLL 873 (1050)
Q Consensus 824 llLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl 873 (1050)
|||||||++||+.+++.+.+.|++.. +++|+|++||+...+.. |++++++
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999999998764 47899999999887655 9999876
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=374.10 Aligned_cols=215 Identities=22% Similarity=0.367 Sum_probs=181.0
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccC--CccEEEECCeecCCCChHH-Hhh
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL--ERGRILIDGFDIAKFGLMD-LRK 741 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p--~~G~i~~~g~~i~~~~~~~-~r~ 741 (1050)
.++++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+... .|+
T Consensus 5 ~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 3899999999964 3699999999999999999999999999999999999996 8999999999998766554 467
Q ss_pred heEEEcCCcccccc-cHHHhcccCCC------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001580 742 ILGIIPQSPVLFSG-TVRFNLDPFSE------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 814 (1050)
Q Consensus 742 ~i~~v~Q~~~lf~~-tv~~nl~~~~~------~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lA 814 (1050)
.++|+||++.+|.. |+++|+.+... ....+.. ..+.++++.+ |++........+||||||||++||
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~la 155 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMY-----LRAQKLLAQL--KLDINPATPVGNLGLGQQQLVEIA 155 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHH-----HHHHHHHHHc--CCCCCcccchhhCCHHHHHHHHHH
Confidence 79999999988865 99999975421 1111111 1133444443 444445566678999999999999
Q ss_pred HHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001580 815 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 888 (1050)
Q Consensus 815 rall~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 888 (1050)
|||+.+|+||||||||++||+.++..+.+.|.++. +++|||+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 156 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 156 KALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 99999999999999999999999999999998864 47899999999999877 9999999999999999988764
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=373.06 Aligned_cols=215 Identities=24% Similarity=0.364 Sum_probs=179.5
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHH-Hhhhe
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRKIL 743 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~-~r~~i 743 (1050)
.|+++|++++|++ .++|+|+||+|.+||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 3899999999964 36999999999999999999999999999999999999999999999999987655544 35679
Q ss_pred EEEcCCcccccc-cHHHhcccCCC-------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001580 744 GIIPQSPVLFSG-TVRFNLDPFSE-------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 815 (1050)
Q Consensus 744 ~~v~Q~~~lf~~-tv~~nl~~~~~-------~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAr 815 (1050)
+|+||++.++.. |+++|+.+... ....+.. ..+.+.++.+ |+.........+||||||||++|||
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~ 154 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMY-----AEADKLLARL--NLRFSSDKLVGELSIGEQQMVEIAK 154 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHH-----HHHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHH
Confidence 999999988865 99999975321 1111111 1123344443 4444445556789999999999999
Q ss_pred HHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001580 816 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 888 (1050)
Q Consensus 816 all~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 888 (1050)
||+.+|++|||||||++||+.+...+++.|+++. .+.|||+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 155 VLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred HHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 9999999999999999999999999999998864 47899999999999877 9999999999999999988764
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=377.66 Aligned_cols=97 Identities=25% Similarity=0.439 Sum_probs=88.5
Q ss_pred Ccch-hhhcCCCCCChhHHHHHHHHHHHcc---CCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhh
Q 001580 791 GLDA-QVSEAGENFSVGQRQLLSLSRALLR---RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTII 865 (1050)
Q Consensus 791 gl~t-~v~~~~~~LSgGq~qrl~lArall~---~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~ 865 (1050)
|+.. ..++...+|||||+||++|||+|++ +|+++||||||+|||+.+...+++.|+++. +|.|||+|+|+++.+.
T Consensus 816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~ 895 (924)
T TIGR00630 816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK 895 (924)
T ss_pred CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 5554 3677888999999999999999997 599999999999999999999999999875 4789999999999998
Q ss_pred hcCEEEEE------eCCEEEEecChhHH
Q 001580 866 DCDRILLL------DSGRVLEYDTPEEL 887 (1050)
Q Consensus 866 ~~d~i~vl------~~G~i~~~g~~~el 887 (1050)
.||+|++| ++|+|++.|+++++
T Consensus 896 ~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 896 TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 89999999 79999999999886
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=333.59 Aligned_cols=467 Identities=19% Similarity=0.202 Sum_probs=298.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccCh-----hHHHHHHHhhHHHHHHHHHHH
Q 001580 384 NTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPL-----GRIINRFAKDLGDIDRNVAVF 458 (1050)
Q Consensus 384 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~-----G~l~~rl~~D~~~i~~~~~~~ 458 (1050)
..+|..+....+++...+.|+......+....+-..+.++-+.....|+..... -..=+|+..|+...-.....+
T Consensus 89 l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l 168 (604)
T COG4178 89 LQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDL 168 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHH
Confidence 455666677777778888888888888888888888999988877444433322 233478999988877655555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHH
Q 001580 459 VNMFMGQVSQLLSTFVLIGIV---------------STMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQF 523 (1050)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (1050)
...++..+..+++...++.-+ ..++.|.++..++..-.+...+.+....+.-......+.+...+
T Consensus 169 ~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~L 248 (604)
T COG4178 169 SFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSL 248 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHH
Confidence 555555555555444433311 12222332222222222222222222222222222233444555
Q ss_pred HHHHchHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhHH
Q 001580 524 GEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGAN---RWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFA 600 (1050)
Q Consensus 524 ~e~l~gi~~Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~ 600 (1050)
...-++...|-.|+.|+.........+.............. .|.......++.++-++.+.-. +..|..+-
T Consensus 249 vrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~-~f~g~i~~----- 322 (604)
T COG4178 249 VRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPR-YFSGQITF----- 322 (604)
T ss_pred HHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHh-hhcCcChH-----
Confidence 66677788888887776554444443333222211111111 1222222222222222211111 12222211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC------CCCCccccCCCCCCCCCCCCccEEEEEEEEE
Q 001580 601 STMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIEL------PSEAPLVIESNRPPPGWPSSGSIKFEDVVLR 674 (1050)
Q Consensus 601 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~------~~e~~~~~~~~~~~~~~~~~~~i~~~~v~~~ 674 (1050)
.-+......+..+...++.+...+..+....+.+.|+.++... +.+.+.... .........+..|+++|++..
T Consensus 323 G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~nl~l~ 401 (604)
T COG4178 323 GGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTG-RRIDFDDNADHGITLENLSLR 401 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCccc-ccccccccccceeEEeeeeEE
Confidence 1111122223334445555555566666667778888877632 111111100 000000001456999999999
Q ss_pred eCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEEEcCCccccc
Q 001580 675 YRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFS 754 (1050)
Q Consensus 675 y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~ 754 (1050)
-+++. +.+++.+|+|+|||.+-|.|+||||||||+|+|+|+++--+|+|.+-. -..+-|+||.|.+-.
T Consensus 402 ~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~ 469 (604)
T COG4178 402 TPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQ 469 (604)
T ss_pred CCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCC
Confidence 87654 789999999999999999999999999999999999999999987641 124789999999999
Q ss_pred ccHHHhcccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCc
Q 001580 755 GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 831 (1050)
Q Consensus 755 ~tv~~nl~~~~---~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~illLDEpts 831 (1050)
||+||-|.+-. +.+|+++.++|.++++.++++++. +.+. -...||+||||||++||.|+++|++++|||+||
T Consensus 470 GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~-~~~~----W~~vLS~GEqQRlafARilL~kP~~v~LDEATs 544 (604)
T COG4178 470 GTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLD-EEDR----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATS 544 (604)
T ss_pred ccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHh-ccCc----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchh
Confidence 99999887432 268999999999999999999963 2222 345699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEe
Q 001580 832 AVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLD 874 (1050)
Q Consensus 832 ~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~ 874 (1050)
+||++++..+++.+++..++.|+|-|+||.....-.++.+-+.
T Consensus 545 ALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 545 ALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred ccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 9999999999999999889999999999988776666655543
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=338.86 Aligned_cols=218 Identities=17% Similarity=0.293 Sum_probs=168.1
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccc--cCCccEEEECCeecCCCChHHHh-hh
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV--ELERGRILIDGFDIAKFGLMDLR-KI 742 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~--~p~~G~i~~~g~~i~~~~~~~~r-~~ 742 (1050)
++++|++++|++. ++|+|+||+|++|+++||+||||||||||+++|+|++ +|++|+|.++|.++...++...+ ..
T Consensus 2 i~~~nl~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVEDK--AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeCCe--eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 7899999999743 6999999999999999999999999999999999994 69999999999999877766554 56
Q ss_pred eEEEcCCcccccc-cHHHhcccC-CC---CCHHHHHHHHH-HhcHHHHHHHccCCcc-hhhhcCC-CCCChhHHHHHHHH
Q 001580 743 LGIIPQSPVLFSG-TVRFNLDPF-SE---HSDADLWEALE-RAHLKDAIRRNSLGLD-AQVSEAG-ENFSVGQRQLLSLS 814 (1050)
Q Consensus 743 i~~v~Q~~~lf~~-tv~~nl~~~-~~---~~~~~~~~~l~-~~~~~~~i~~~p~gl~-t~v~~~~-~~LSgGq~qrl~lA 814 (1050)
++|++|++.++.. |..+++... .. .......+..+ ...+.+.++.+ ++. ....... ..||||||||++||
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~LS~G~~qrv~la 157 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALL--KMPEDLLTRSVNVGFSGGEKKRNDIL 157 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHc--CCChhhcccCCCCCCCHHHHHHHHHH
Confidence 9999999987654 544443211 00 00000000000 01112233322 221 1122223 36999999999999
Q ss_pred HHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC-CcEEEEeecCchhhhh--cCEEEEEeCCEEEEecChhHH
Q 001580 815 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID--CDRILLLDSGRVLEYDTPEEL 887 (1050)
Q Consensus 815 rall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~--~d~i~vl~~G~i~~~g~~~el 887 (1050)
||++++|+||||||||++||+.+...+.+.|+++.+ ++|||++||+++.+.. ||+|++|++|++++.|+++..
T Consensus 158 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 158 QMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 999999999999999999999999999999988654 6899999999999876 899999999999999998854
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=330.19 Aligned_cols=204 Identities=34% Similarity=0.554 Sum_probs=177.1
Q ss_pred EEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeEE------------eCcEE
Q 001580 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------RGTVA 109 (1050)
Q Consensus 42 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~------------~~~i~ 109 (1050)
|+++|+++.|+.. .+++|+|+||++++|++++|+||||||||||+++|+|+.+|++|.+... +..++
T Consensus 3 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 3 IEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred EEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 7899999999632 3579999999999999999999999999999999999999998765321 23599
Q ss_pred EEecCCCCCcccHHHHhccCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCE
Q 001580 110 YVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 188 (1050)
Q Consensus 110 ~v~Q~~~l~~~TV~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~v 188 (1050)
|++|++.++..||.||+.++.. ....+....++..++.+.++..|.+..|.+.....+||||||||++|||||+.+|++
T Consensus 82 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~l 161 (220)
T cd03245 82 YVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPI 161 (220)
T ss_pred EeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999887899999987643 233455667777888888888888888888888889999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhhcCEEEEEcCCeEeec
Q 001580 189 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEE 247 (1050)
Q Consensus 189 llLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~~d~i~~l~~G~i~~~ 247 (1050)
+||||||++||+.+++.+++.+.+... ++|+|++||+++++..||++++|++|++++.
T Consensus 162 lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~ 219 (220)
T cd03245 162 LLLDEPTSAMDMNSEERLKERLRQLLG-DKTLIIITHRPSLLDLVDRIIVMDSGRIVAD 219 (220)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHHhCCEEEEEeCCeEeec
Confidence 999999999999999999998876544 4899999999999877899999999998754
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=358.09 Aligned_cols=226 Identities=27% Similarity=0.469 Sum_probs=186.7
Q ss_pred cEEEEEEEEEeCCCC--CCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCC----ccEEEECCeecCCCChHH
Q 001580 665 SIKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE----RGRILIDGFDIAKFGLMD 738 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~--~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~----~G~i~~~g~~i~~~~~~~ 738 (1050)
.++++|+++.|.... ..+++||||+|.+||++||||.|||||||+.++|.|++++. +|+|.++|.|+-.++...
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 489999999996332 25999999999999999999999999999999999999988 899999999998888766
Q ss_pred Hh----hheEEEcCCcc-cccc--cHHHhcc----cCCCC----CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCC
Q 001580 739 LR----KILGIIPQSPV-LFSG--TVRFNLD----PFSEH----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENF 803 (1050)
Q Consensus 739 ~r----~~i~~v~Q~~~-lf~~--tv~~nl~----~~~~~----~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~L 803 (1050)
+| +.|+|+||+|. .++. ||.+.|. ..... ...+..+.++.+++.+-... ...+.+|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 53 45999999995 5554 7766553 11111 12334444444444321111 3456899
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEE
Q 001580 804 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 880 (1050)
Q Consensus 804 SgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~ 880 (1050)
|||||||+.||+||+.+|++||+||||.+||+.+++.|.+.|+++. .|.++|+||||+..+.. ||||+||.+|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999976 47899999999999987 99999999999999
Q ss_pred ecChhHHhhcCCChHHHHH
Q 001580 881 YDTPEELLSNEGSSFSKMV 899 (1050)
Q Consensus 881 ~g~~~el~~~~~~~~~~~~ 899 (1050)
.|++++++.++...|.+..
T Consensus 236 ~G~~~~i~~~p~hpYT~~L 254 (539)
T COG1123 236 TGPTEEILSNPQHPYTRGL 254 (539)
T ss_pred ecCHHHHHhccCCcccHHH
Confidence 9999999998877776654
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=345.22 Aligned_cols=207 Identities=25% Similarity=0.435 Sum_probs=169.1
Q ss_pred cEEEEeEEEEeCCCC--CCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE---------------
Q 001580 41 AISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 103 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~--~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------- 103 (1050)
+|+++|++|+|+... .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+..
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 378999999997321 136999999999999999999999999999999999999999886532
Q ss_pred -EeCcEEEEecCC--CCCcccHHHHhccCCC---CCHH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHH
Q 001580 104 -IRGTVAYVPQVS--WIFNATVRDNILFGSA---FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 173 (1050)
Q Consensus 104 -~~~~i~~v~Q~~--~l~~~TV~eni~~g~~---~~~~----~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqr 173 (1050)
.+..||||+|+| .++..||.||+.|+.. .... ++.+.++..++...+ ......+||||||
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~~~LSgGqk 150 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEF----------WEKSPFELSGGQM 150 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhh----------ccCCcccCCHHHH
Confidence 123599999998 6778899999998732 1121 233334444443211 2234578999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhh
Q 001580 174 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 252 (1050)
Q Consensus 174 qRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 252 (1050)
||++|||||+.+|+++||||||++||+.+++.+.+.+.+...+|.|+|++|||++++.. ||||++|++|+++++|++++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999877665568999999999999864 89999999999999999998
Q ss_pred hhcCh
Q 001580 253 LSNNG 257 (1050)
Q Consensus 253 l~~~~ 257 (1050)
+....
T Consensus 231 ~~~~~ 235 (288)
T PRK13643 231 VFQEV 235 (288)
T ss_pred HHcCH
Confidence 86553
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=329.07 Aligned_cols=194 Identities=25% Similarity=0.343 Sum_probs=163.4
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
++++|++++|+.. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ...+++++|
T Consensus 2 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERDER--ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEECCE--EEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEE
Confidence 7899999999643 6999999999999999999999999999999999999999999999999987643 356788999
Q ss_pred EcCCccccc-ccHHHhcccCCC----CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccC
Q 001580 746 IPQSPVLFS-GTVRFNLDPFSE----HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 820 (1050)
Q Consensus 746 v~Q~~~lf~-~tv~~nl~~~~~----~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~ 820 (1050)
++|++.++. .|+++|+.+... ..++++.++++..++.++ .......||||||||++||||++++
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGF-----------EDVPVRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHH-----------hhCChhhcCHHHHHHHHHHHHHhcC
Confidence 999998876 499999965321 123344555555555433 3344568999999999999999999
Q ss_pred CCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEE
Q 001580 821 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLL 873 (1050)
Q Consensus 821 p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl 873 (1050)
|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++++.. .+|++++
T Consensus 148 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999999864 47899999999999977 4566655
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=354.80 Aligned_cols=204 Identities=29% Similarity=0.425 Sum_probs=171.8
Q ss_pred CCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE----------EeCcE
Q 001580 39 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTV 108 (1050)
Q Consensus 39 ~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i 108 (1050)
.+.|+++|++++|+. +++|+++||++++|++++|+|||||||||||++|+|+.+|++|.+.. .++.|
T Consensus 12 ~~~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~i 88 (375)
T PRK09452 12 SPLVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHV 88 (375)
T ss_pred CceEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 346999999999963 56999999999999999999999999999999999999999876532 12359
Q ss_pred EEEecCCCCC-cccHHHHhccCCCC---CH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHH
Q 001580 109 AYVPQVSWIF-NATVRDNILFGSAF---EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 180 (1050)
Q Consensus 109 ~~v~Q~~~l~-~~TV~eni~~g~~~---~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAr 180 (1050)
|||+|++.+| ..||+|||.|+... .. ++....++..++.+..+..| .+|||||||||+|||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHH
Confidence 9999999987 67999999987421 11 23344455556655554443 589999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhh-hcCEEEEEcCCeEeeccChhhhhcC
Q 001580 181 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 256 (1050)
Q Consensus 181 aL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 256 (1050)
||+.+|++|||||||++||+..+.++.+.+.+..+ .|.|+|+||||.+++. .+|+|++|++|++++.|+++++...
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~ 235 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE 235 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999998877654 4899999999999976 4899999999999999999887654
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=337.29 Aligned_cols=194 Identities=26% Similarity=0.410 Sum_probs=160.8
Q ss_pred eeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEEEcCCccccc-ccHHHhc
Q 001580 683 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFS-GTVRFNL 761 (1050)
Q Consensus 683 l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~~nl 761 (1050)
|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+||++.+|. .|+.+|+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999876443 2489999999887 5999998
Q ss_pred ccC-----CCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHH
Q 001580 762 DPF-----SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 836 (1050)
Q Consensus 762 ~~~-----~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~illLDEpts~LD~~ 836 (1050)
.+. ....+.+.. ..+.++++. .|++.........||||||||++|||||+.+|++|||||||++||+.
T Consensus 76 ~~~~~~~~~~~~~~~~~-----~~~~~~l~~--~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~ 148 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERR-----AIVEEHIAL--VGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDAL 148 (230)
T ss_pred HHHHHhcccCCCHHHHH-----HHHHHHHHH--cCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHH
Confidence 642 112221111 112233333 24444555566789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001580 837 TDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 888 (1050)
Q Consensus 837 ~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 888 (1050)
+++.+.+.|+++. .++|+|+|||+++++.. ||+|++|++|++++.|+..+++
T Consensus 149 ~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 149 TRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 9999999998864 37899999999999876 9999999999999999877663
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=304.96 Aligned_cols=220 Identities=27% Similarity=0.426 Sum_probs=182.1
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCC----------
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF---------- 734 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~---------- 734 (1050)
.++++|+.++|+.. .+|++||++-++|+++.|+|.|||||||+++||.=+-.|+.|.|.++|..|+-.
T Consensus 6 ~l~v~dlHK~~G~~--eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 6 ALEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred ceehhHHHhhcccc--hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 48999999999765 699999999999999999999999999999999999999999999999887421
Q ss_pred C---hHHHhhheEEEcCCcccccc-cHHHhcccCC----CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChh
Q 001580 735 G---LMDLRKILGIIPQSPVLFSG-TVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVG 806 (1050)
Q Consensus 735 ~---~~~~r~~i~~v~Q~~~lf~~-tv~~nl~~~~----~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgG 806 (1050)
+ ...+|.+.|+|+|+..|++. |+.+|..-.. ..+..+..+ + +..++.+ .|+.......+..||||
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e---~--Ae~~L~k--VGi~ek~~~YP~~LSGG 156 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIE---R--AEKYLAK--VGIAEKADAYPAHLSGG 156 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHH---H--HHHHHHH--hCchhhhhcCccccCch
Confidence 2 23468889999999999975 9999984221 111211111 1 1222332 34444444555789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecCh
Q 001580 807 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 884 (1050)
Q Consensus 807 q~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~ 884 (1050)
|+||++|||||.-+|+++|+|||||+|||+-.-++.+.++++. .|+|+++|||.|.+..+ +.+|+.+++|.|-|+|+|
T Consensus 157 QQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P 236 (256)
T COG4598 157 QQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPP 236 (256)
T ss_pred HHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCCh
Confidence 9999999999999999999999999999999999999998876 58999999999999988 999999999999999999
Q ss_pred hHHhhcCCC
Q 001580 885 EELLSNEGS 893 (1050)
Q Consensus 885 ~el~~~~~~ 893 (1050)
+++..++.+
T Consensus 237 ~qvf~nP~S 245 (256)
T COG4598 237 EQVFGNPQS 245 (256)
T ss_pred HHHhcCCCC
Confidence 999987653
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=345.42 Aligned_cols=207 Identities=28% Similarity=0.459 Sum_probs=168.7
Q ss_pred cEEEEeEEEEeCCCC--CCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE--------------E
Q 001580 41 AISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------I 104 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~--~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------~ 104 (1050)
.|+++|++|.|+... .+++|+||||+|++||+++|+|+||||||||+++|+|+++|++|.+.. .
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 389999999997421 257999999999999999999999999999999999999999886532 1
Q ss_pred eCcEEEEecCC--CCCcccHHHHhccCCC---CCHH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHH
Q 001580 105 RGTVAYVPQVS--WIFNATVRDNILFGSA---FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 175 (1050)
Q Consensus 105 ~~~i~~v~Q~~--~l~~~TV~eni~~g~~---~~~~----~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqR 175 (1050)
+..||||||+| .++..||+||+.|+.. .... ++..+++.+++.. .+..+....+||||||||
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------~~~~~~~~~~LSgGq~qr 152 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY---------EDYKDKSPFELSGGQKRR 152 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCc---------hhhccCCcccCCHHHHHH
Confidence 23599999998 4678899999998631 2222 2333444444430 012334457899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhh-hcCEEEEEcCCeEeeccChhhh
Q 001580 176 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDL 253 (1050)
Q Consensus 176 v~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l 253 (1050)
++|||||+.+|++|||||||++||+.++.++++.+..... .|+|+|+||||++++. .||||++|++|++++.|+.+++
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~ 232 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999998877654 4899999999999986 5899999999999999999887
Q ss_pred hcC
Q 001580 254 SNN 256 (1050)
Q Consensus 254 ~~~ 256 (1050)
.+.
T Consensus 233 ~~~ 235 (287)
T PRK13637 233 FKE 235 (287)
T ss_pred HhC
Confidence 654
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=333.32 Aligned_cols=192 Identities=24% Similarity=0.412 Sum_probs=157.9
Q ss_pred cEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE---------------Ee
Q 001580 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IR 105 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------~~ 105 (1050)
+|+++|++++|+.. .+++|+++||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+
T Consensus 1 ~l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (216)
T TIGR00960 1 MIRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLR 79 (216)
T ss_pred CeEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHH
Confidence 37899999999632 246999999999999999999999999999999999999998876532 12
Q ss_pred CcEEEEecCCCCC-cccHHHHhccCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHH
Q 001580 106 GTVAYVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 177 (1050)
Q Consensus 106 ~~i~~v~Q~~~l~-~~TV~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~ 177 (1050)
..++|++|++.++ ..||+||+.++.. .. .+++.+.++..++.+..+. ...+|||||||||+
T Consensus 80 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~ 148 (216)
T TIGR00960 80 RHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHA-----------LPMQLSGGEQQRVA 148 (216)
T ss_pred HhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHHH
Confidence 3599999999887 5799999987521 11 1233444555555443332 33589999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeE
Q 001580 178 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMV 244 (1050)
Q Consensus 178 LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i 244 (1050)
|||||+.+|++|||||||++||+.+++++.+.+.+...+|+|+|+||||++++.. ||++++|++|++
T Consensus 149 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 149 IARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999999887665568999999999999875 799999999874
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=370.71 Aligned_cols=210 Identities=20% Similarity=0.232 Sum_probs=177.9
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
|+++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 4 l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 4 LQISQGTFRLSDT--KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred EEEEeEEEEcCCe--eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 8999999999643 59999999999999999999999999999999999999999999999988876666677788999
Q ss_pred EcCCccc--c-------cccHHHhcccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001580 746 IPQSPVL--F-------SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 816 (1050)
Q Consensus 746 v~Q~~~l--f-------~~tv~~nl~~~~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAra 816 (1050)
+||++.+ + ..|+++|+.... ..++++.++++..+ ++........+||||||||++||||
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgG~~qrv~la~a 149 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEV-KDPARCEQLAQQFG-----------ITALLDRRFKYLSTGETRKTLLCQA 149 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccch-hHHHHHHHHHHHcC-----------CHhhhhCCcccCCHHHHHHHHHHHH
Confidence 9998753 2 348888875421 11233444444444 4334445567899999999999999
Q ss_pred HccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC-CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001580 817 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889 (1050)
Q Consensus 817 ll~~p~illLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 889 (1050)
|+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|||+|||+++.+.. ||+|++|++|+++..|+++++..
T Consensus 150 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 150 LMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224 (490)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999988643 6899999999999877 99999999999999999998865
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=350.86 Aligned_cols=204 Identities=24% Similarity=0.401 Sum_probs=168.1
Q ss_pred CCCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE-----------EeC
Q 001580 38 GLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRG 106 (1050)
Q Consensus 38 ~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-----------~~~ 106 (1050)
+...|+++|++++|+ ++.+|+|+||+|++|+++||+||||||||||+++|+|+++|++|.+.. .+.
T Consensus 38 ~~~~i~i~nl~k~y~---~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~ 114 (340)
T PRK13536 38 STVAIDLAGVSKSYG---DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARA 114 (340)
T ss_pred CceeEEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhc
Confidence 445699999999996 356999999999999999999999999999999999999999886542 134
Q ss_pred cEEEEecCCCCC-cccHHHHhccC-CC--CCHH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHH
Q 001580 107 TVAYVPQVSWIF-NATVRDNILFG-SA--FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 178 (1050)
Q Consensus 107 ~i~~v~Q~~~l~-~~TV~eni~~g-~~--~~~~----~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~L 178 (1050)
.|||+||++.++ ..||+||+.+. .. .... +....++.+++.+. ......+||||||||++|
T Consensus 115 ~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~-----------~~~~~~~LS~G~kqrv~l 183 (340)
T PRK13536 115 RIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK-----------ADARVSDLSGGMKRRLTL 183 (340)
T ss_pred cEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hCCChhhCCHHHHHHHHH
Confidence 599999999886 78999999752 11 1111 12222333333221 223446899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhhhc
Q 001580 179 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 255 (1050)
Q Consensus 179 AraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 255 (1050)
||||+++|+++||||||+||||.+++++++.+.+....|+|+|++||+++++.. ||+|++|++|++++.|+++++..
T Consensus 184 A~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 184 ARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999888766579999999999999975 89999999999999999988754
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=353.23 Aligned_cols=202 Identities=26% Similarity=0.395 Sum_probs=170.0
Q ss_pred cEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCC--CCeeE----------EeCcE
Q 001580 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--DASAV----------IRGTV 108 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~--g~~~~----------~~~~i 108 (1050)
.|+++|++++|+. +.+|+|+||++++|++++|+|||||||||||++|+|+.+|++ |.+.. .++.|
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~i 81 (362)
T TIGR03258 5 GIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGL 81 (362)
T ss_pred EEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCE
Confidence 4899999999963 469999999999999999999999999999999999999998 86542 12459
Q ss_pred EEEecCCCCC-cccHHHHhccCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHH
Q 001580 109 AYVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 180 (1050)
Q Consensus 109 ~~v~Q~~~l~-~~TV~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAr 180 (1050)
|||+|++.+| ..||+|||.|+.. ... .++...++..++.+..+. ...+|||||||||+|||
T Consensus 82 g~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~-----------~~~~LSgGq~QRvaLAR 150 (362)
T TIGR03258 82 ALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAH-----------LPAQLSGGMQQRIAIAR 150 (362)
T ss_pred EEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhC-----------ChhhCCHHHHHHHHHHH
Confidence 9999999987 6799999998632 121 223344555555444433 33689999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccC--CcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhhhcC
Q 001580 181 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS--GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 256 (1050)
Q Consensus 181 aL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~--g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 256 (1050)
||+.+|++|||||||++||+..+.++.+.+.+..++ |.|+|+||||++++.. +|+|++|++|++++.|+++++..+
T Consensus 151 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~ 229 (362)
T TIGR03258 151 AIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229 (362)
T ss_pred HHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999988776554 7899999999999765 799999999999999999988654
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=350.97 Aligned_cols=202 Identities=31% Similarity=0.455 Sum_probs=168.9
Q ss_pred cEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE----------EeCcEEE
Q 001580 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 110 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~ 110 (1050)
.|+++|+++.|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .++.|||
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~ 78 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGF 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEE
Confidence 3789999999963 56999999999999999999999999999999999999999886543 1245999
Q ss_pred EecCCCCC-cccHHHHhccCCCC-------CH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHH
Q 001580 111 VPQVSWIF-NATVRDNILFGSAF-------EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 178 (1050)
Q Consensus 111 v~Q~~~l~-~~TV~eni~~g~~~-------~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~L 178 (1050)
|+|++.+| ..||+||+.|+... .. ++....++..++.+..+ ....+|||||||||+|
T Consensus 79 v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGq~QRval 147 (353)
T PRK10851 79 VFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLAD-----------RYPAQLSGGQKQRVAL 147 (353)
T ss_pred EecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHHH
Confidence 99999987 57999999987421 11 12333444455543333 3346899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccC-CcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhhhcC
Q 001580 179 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 256 (1050)
Q Consensus 179 AraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~-g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 256 (1050)
||||+.+|++|||||||++||+.+++.+.+.+.+..++ |.|+|+||||++++.. ||+|++|++|++++.|+++++...
T Consensus 148 ArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~ 227 (353)
T PRK10851 148 ARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWRE 227 (353)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999999988776544 8999999999999765 799999999999999999887654
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=351.68 Aligned_cols=205 Identities=28% Similarity=0.413 Sum_probs=168.9
Q ss_pred cEEEEeEEEEeCCCC-CCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE---------------E
Q 001580 41 AISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------I 104 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~-~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------~ 104 (1050)
+|+++|++|+|+... ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+.. .
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 378999999997322 357999999999999999999999999999999999999999886532 1
Q ss_pred eCcEEEEecCCCCC-cccHHHHhccCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHH
Q 001580 105 RGTVAYVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 176 (1050)
Q Consensus 105 ~~~i~~v~Q~~~l~-~~TV~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv 176 (1050)
+..|||++|++.++ ..||+||+.++.. ... ++....++..++.+.. .....+|||||||||
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LSgGq~qRv 149 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKA-----------DRYPAQLSGGQKQRV 149 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHHH
Confidence 24699999999887 5899999987521 122 1223334444443332 234468999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhhh
Q 001580 177 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLS 254 (1050)
Q Consensus 177 ~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 254 (1050)
+|||||+.+|++|||||||++||+.++..+++.+.+... .|+|+|++||+++++.. ||++++|++|++++.|+.+++.
T Consensus 150 ~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999998877644 48999999999999876 8999999999999999998886
Q ss_pred cC
Q 001580 255 NN 256 (1050)
Q Consensus 255 ~~ 256 (1050)
..
T Consensus 230 ~~ 231 (343)
T PRK11153 230 SH 231 (343)
T ss_pred hC
Confidence 54
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=299.41 Aligned_cols=205 Identities=27% Similarity=0.363 Sum_probs=172.1
Q ss_pred cEEEEEEEEEeCC--CCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHH---H
Q 001580 665 SIKFEDVVLRYRP--ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---L 739 (1050)
Q Consensus 665 ~i~~~~v~~~y~~--~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~---~ 739 (1050)
.|++++++++.+. ....+|++|+|.|.+||.+|||||||||||||+-+++|+-+|++|+|++.|+++.+++.+. +
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 4888888888753 2346999999999999999999999999999999999999999999999999999988654 3
Q ss_pred -hhheEEEcCCccccc-ccHHHhcccC----CC-CCH--HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001580 740 -RKILGIIPQSPVLFS-GTVRFNLDPF----SE-HSD--ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 810 (1050)
Q Consensus 740 -r~~i~~v~Q~~~lf~-~tv~~nl~~~----~~-~~~--~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qr 810 (1050)
.+++|+|+|...|.. .|-.||...- .+ ..+ ....+.++++ |+...+...+.+|||||+||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~v-----------GLg~Rl~HyP~qLSGGEQQR 154 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAV-----------GLGKRLTHYPAQLSGGEQQR 154 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHh-----------CcccccccCccccCchHHHH
Confidence 456999999998774 5999998632 11 111 2233344444 44445555567899999999
Q ss_pred HHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhhcCEEEEEeCCEEEE
Q 001580 811 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 880 (1050)
Q Consensus 811 l~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~ 880 (1050)
|+||||+...|+||+-||||-+||.+|-..|.+.+..+. .|.|.++||||.....+|||++-|.+|++++
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence 999999999999999999999999999999999998754 4789999999999999999999999999975
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=330.72 Aligned_cols=193 Identities=29% Similarity=0.432 Sum_probs=158.7
Q ss_pred EEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE----------EeCcEEEE
Q 001580 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 111 (1050)
Q Consensus 42 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v 111 (1050)
++++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..++|+
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v 77 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMV 77 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEE
Confidence 478999999963 57999999999999999999999999999999999999999886532 12359999
Q ss_pred ecCCCCC-cccHHHHhccCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHc
Q 001580 112 PQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 183 (1050)
Q Consensus 112 ~Q~~~l~-~~TV~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~ 183 (1050)
||++.++ ..||+||+.++.. ... +++...++..++.+..+ ....+|||||||||+|||||+
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la~al~ 146 (213)
T cd03259 78 FQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLN-----------RYPHELSGGQQQRVALARALA 146 (213)
T ss_pred cCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHHHHHHHHh
Confidence 9999876 6799999987522 111 12333444444443333 334689999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhh-cCEEEEEcCCeEeecc
Q 001580 184 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEG 248 (1050)
Q Consensus 184 ~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g 248 (1050)
.+|+++||||||++||+.++.++++.+.+... .|+|+|++||+++++.. ||++++|++|++++.|
T Consensus 147 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 147 REPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999998876544 48999999999999865 7999999999987654
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=354.14 Aligned_cols=202 Identities=29% Similarity=0.403 Sum_probs=169.0
Q ss_pred cEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE----------EeCcEEE
Q 001580 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 110 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~ 110 (1050)
.|+++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..|||
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~ 79 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGM 79 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEE
Confidence 4899999999963 56999999999999999999999999999999999999999886542 1235999
Q ss_pred EecCCCCC-cccHHHHhccCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHH
Q 001580 111 VPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 182 (1050)
Q Consensus 111 v~Q~~~l~-~~TV~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL 182 (1050)
|+|++.+| ..||+||+.|+.. ... +++...++..++.+..+. ...+|||||||||+|||||
T Consensus 80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~-----------~~~~LSgGq~QRvaLAraL 148 (369)
T PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDR-----------KPKALSGGQRQRVAIGRTL 148 (369)
T ss_pred EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcC-----------ChhhCCHHHHHHHHHHHHH
Confidence 99999887 5799999998632 111 233444555555443333 3368999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhhhcC
Q 001580 183 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 256 (1050)
Q Consensus 183 ~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 256 (1050)
+.+|++|||||||++||+.+++.+.+.+.+... .|.|+|+||||++++.. ||+|++|++|++++.|+++++...
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999998876644 48999999999998865 799999999999999999887644
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=325.76 Aligned_cols=193 Identities=23% Similarity=0.317 Sum_probs=161.1
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....++++++|
T Consensus 2 l~~~~l~~~~~~~--~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHDQ--PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCCe--eEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEE
Confidence 7899999999643 69999999999999999999999999999999999999999999999998865 34567889999
Q ss_pred EcCCccccc-ccHHHhcccCCC--CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 001580 746 IPQSPVLFS-GTVRFNLDPFSE--HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 822 (1050)
Q Consensus 746 v~Q~~~lf~-~tv~~nl~~~~~--~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~ 822 (1050)
+||++.++. .|+++|+.+... ..+..+ .+.++.+ ++.........+||||||||++||||++++|+
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~---------~~~l~~~--~l~~~~~~~~~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGAVGI---------TELCRLF--SLEHLIDYPCGLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcchHHH---------HHHHHHc--CCchhhhCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 999998874 699999875321 111223 3344433 22233344456799999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhhcCEEEE
Q 001580 823 ILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILL 872 (1050)
Q Consensus 823 illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~v 872 (1050)
+|||||||++||+.+.+.+.+.|+++. .++|+|++||+.+.+..||.-.+
T Consensus 148 ~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 148 LWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 999999999999999999999999863 57899999999999998987653
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=333.91 Aligned_cols=201 Identities=30% Similarity=0.446 Sum_probs=165.5
Q ss_pred cEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE----------EeCcEEE
Q 001580 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 110 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~ 110 (1050)
.|+++|++|.|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..++|
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~ 78 (239)
T cd03296 2 SIEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGF 78 (239)
T ss_pred EEEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEE
Confidence 3789999999963 57999999999999999999999999999999999999998876532 1235999
Q ss_pred EecCCCCC-cccHHHHhccCCCC-------CH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHH
Q 001580 111 VPQVSWIF-NATVRDNILFGSAF-------EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 178 (1050)
Q Consensus 111 v~Q~~~l~-~~TV~eni~~g~~~-------~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~L 178 (1050)
++|+|.++ ..||+||+.++... +. ++....++..++.+.. .....+|||||||||+|
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~l 147 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLA-----------DRYPAQLSGGQRQRVAL 147 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhh-----------hcChhhCCHHHHHHHHH
Confidence 99999887 57999999876321 11 1122334444443322 23446899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhhhc
Q 001580 179 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 255 (1050)
Q Consensus 179 AraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 255 (1050)
||||+.+|+++||||||++||+.+++.+++.+.+... .|+|+|++||+++++.. ||++++|++|++++.|+++++..
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 148 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 9999999999999999999999999999998876654 38999999999998765 79999999999999998887653
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=353.05 Aligned_cols=204 Identities=30% Similarity=0.478 Sum_probs=171.6
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE------------EeCc
Q 001580 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 107 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 107 (1050)
+.|+++|+++.|+ ++++|+|+||++++||+++|+||||||||||+|+|+|+++|++|.+.. .++.
T Consensus 2 ~~L~~~nls~~y~---~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ 78 (402)
T PRK09536 2 PMIDVSDLSVEFG---DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRR 78 (402)
T ss_pred ceEEEeeEEEEEC---CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcc
Confidence 3689999999996 357999999999999999999999999999999999999999886542 1235
Q ss_pred EEEEecCCCC-CcccHHHHhccCCC-----C---C---HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHH
Q 001580 108 VAYVPQVSWI-FNATVRDNILFGSA-----F---E---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 175 (1050)
Q Consensus 108 i~~v~Q~~~l-~~~TV~eni~~g~~-----~---~---~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqR 175 (1050)
+|||+|++.+ ++.||+||+.++.. + . .++...+++..++.+..+ ....+||||||||
T Consensus 79 ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~-----------~~~~~LSgGerQR 147 (402)
T PRK09536 79 VASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFAD-----------RPVTSLSGGERQR 147 (402)
T ss_pred eEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHH
Confidence 9999999987 58999999988642 1 1 123344455555544332 2346899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhhh
Q 001580 176 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLS 254 (1050)
Q Consensus 176 v~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 254 (1050)
|+|||||+++|++|||||||++||+.++..+++.+.+..++|+|+|++|||++.+.. |||+++|++|++++.|+++++.
T Consensus 148 v~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 148 VLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999887766568999999999999965 8999999999999999999887
Q ss_pred cCh
Q 001580 255 NNG 257 (1050)
Q Consensus 255 ~~~ 257 (1050)
..+
T Consensus 228 ~~~ 230 (402)
T PRK09536 228 TAD 230 (402)
T ss_pred CcH
Confidence 653
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=341.23 Aligned_cols=200 Identities=29% Similarity=0.452 Sum_probs=167.8
Q ss_pred cEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE------------EeCcE
Q 001580 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 108 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 108 (1050)
.|+++|++|.|+. .+++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+.. .+..|
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 5899999999962 246999999999999999999999999999999999999999886532 12359
Q ss_pred EEEecCC--CCCcccHHHHhccCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHH
Q 001580 109 AYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 179 (1050)
Q Consensus 109 ~~v~Q~~--~l~~~TV~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LA 179 (1050)
||++|+| .++..||+||+.|+.. ... +++...++..++....+..+ .+|||||||||+||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999998 4678899999998632 121 23344555666654444333 58999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhh-hcCEEEEEcCCeEeeccChhhh
Q 001580 180 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDL 253 (1050)
Q Consensus 180 raL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l 253 (1050)
|||+.+|++|||||||++||+.++.++++.+.+...+|.|+|++||+++++. .||||++|++|++++.|+++++
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 9999999999999999999999999999988776556899999999999985 5899999999999999988654
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=342.20 Aligned_cols=207 Identities=30% Similarity=0.521 Sum_probs=169.1
Q ss_pred EEEEeEEEEeCCCC--CCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE----E-----------
Q 001580 42 ISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----I----------- 104 (1050)
Q Consensus 42 i~~~~~~f~~~~~~--~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----~----------- 104 (1050)
++++|++|+|+... .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+.. +
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996321 247999999999999999999999999999999999999999876532 1
Q ss_pred -eCcEEEEecCC--CCCcccHHHHhccCCC---CCHH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHH
Q 001580 105 -RGTVAYVPQVS--WIFNATVRDNILFGSA---FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 174 (1050)
Q Consensus 105 -~~~i~~v~Q~~--~l~~~TV~eni~~g~~---~~~~----~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrq 174 (1050)
+..||||+|+| .+++.||+||+.|+.. .... ++..+++.+++...+ ......+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEEL----------LARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhh----------hhCCcccCCHHHHH
Confidence 13599999997 5677899999988632 1221 233444555553221 12344689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhh
Q 001580 175 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 252 (1050)
Q Consensus 175 Rv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 252 (1050)
||+|||||+.+|+++||||||++||+.++.++++.+..... .|.|+|++|||++++.. ||||++|++|+++++|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999998876644 48999999999999865 89999999999999999988
Q ss_pred hhcChH
Q 001580 253 LSNNGE 258 (1050)
Q Consensus 253 l~~~~~ 258 (1050)
+.+...
T Consensus 233 ~~~~~~ 238 (290)
T PRK13634 233 IFADPD 238 (290)
T ss_pred HhcCHH
Confidence 765543
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=335.30 Aligned_cols=200 Identities=22% Similarity=0.374 Sum_probs=163.2
Q ss_pred EEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE-------------EeCcE
Q 001580 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGTV 108 (1050)
Q Consensus 42 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~i 108 (1050)
++++|++|+|+. +++|+++||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 468999999962 46999999999999999999999999999999999999999886532 12359
Q ss_pred EEEecCCCCC-cccHHHHhccCCCCC-------------HH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCH
Q 001580 109 AYVPQVSWIF-NATVRDNILFGSAFE-------------PA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISG 170 (1050)
Q Consensus 109 ~~v~Q~~~l~-~~TV~eni~~g~~~~-------------~~----~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSG 170 (1050)
+|+||++.++ ..||+||+.++.... .. +....++..++. ...+....+|||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSg 146 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLA-----------DLADRPAGELSY 146 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCcc-----------chhhCChhhCCH
Confidence 9999999887 469999998753210 11 111222222221 123455678999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccC
Q 001580 171 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGT 249 (1050)
Q Consensus 171 GqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 249 (1050)
||||||+|||||+.+|+++||||||++||+.+++++++.+.+...+|+|+|++||+++++.. ||++++|++|++++.|+
T Consensus 147 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~ 226 (236)
T cd03219 147 GQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecC
Confidence 99999999999999999999999999999999999999887765578999999999999876 79999999999999998
Q ss_pred hhhhhc
Q 001580 250 FEDLSN 255 (1050)
Q Consensus 250 ~~~l~~ 255 (1050)
++++..
T Consensus 227 ~~~~~~ 232 (236)
T cd03219 227 PDEVRN 232 (236)
T ss_pred HHHhcc
Confidence 877653
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-37 Score=341.64 Aligned_cols=207 Identities=24% Similarity=0.440 Sum_probs=167.8
Q ss_pred cEEEEeEEEEeCCCC--CCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE---------------
Q 001580 41 AISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 103 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~--~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------- 103 (1050)
.|+++|++|+|+... .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|+.|.+..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 388999999996322 247999999999999999999999999999999999999999885432
Q ss_pred -EeCcEEEEecCC--CCCcccHHHHhccCCC---CCHHH----HHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHH
Q 001580 104 -IRGTVAYVPQVS--WIFNATVRDNILFGSA---FEPAR----YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 173 (1050)
Q Consensus 104 -~~~~i~~v~Q~~--~l~~~TV~eni~~g~~---~~~~~----~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqr 173 (1050)
.+..||||||+| .++..||.||+.|+.. ..... ....++.+++... ..+....+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LSgGq~ 151 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRD----------VMSQSPFQMSGGQM 151 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCHHHH
Confidence 123599999997 5677899999998631 12222 2223333333211 12344578999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChh
Q 001580 174 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFE 251 (1050)
Q Consensus 174 qRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 251 (1050)
|||+|||||+.+|+++||||||++||+.+++++.+.+.+... .|.|+|+|||+++++.. ||||++|++|++++.|+++
T Consensus 152 qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~ 231 (286)
T PRK13646 152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPK 231 (286)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999998877654 58999999999999864 7999999999999999998
Q ss_pred hhhcCh
Q 001580 252 DLSNNG 257 (1050)
Q Consensus 252 ~l~~~~ 257 (1050)
++....
T Consensus 232 ~~~~~~ 237 (286)
T PRK13646 232 ELFKDK 237 (286)
T ss_pred HHHhCH
Confidence 876553
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=327.66 Aligned_cols=195 Identities=24% Similarity=0.344 Sum_probs=163.4
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheE
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 744 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 744 (1050)
.++++|++++|++. ++++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... ..++.++
T Consensus 11 ~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~ 85 (214)
T PRK13543 11 LLAAHALAFSRNEE--PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMA 85 (214)
T ss_pred eEEEeeEEEecCCc--eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceE
Confidence 48999999999643 699999999999999999999999999999999999999999999999988642 3456799
Q ss_pred EEcCCcccccc-cHHHhcccCCC---C-CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHcc
Q 001580 745 IIPQSPVLFSG-TVRFNLDPFSE---H-SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 819 (1050)
Q Consensus 745 ~v~Q~~~lf~~-tv~~nl~~~~~---~-~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~ 819 (1050)
|++|++.++.. |+++|+.+... . .++.+.+.++.. |+..........||||||||++||||+++
T Consensus 86 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~laral~~ 154 (214)
T PRK13543 86 YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIV-----------GLAGYEDTLVRQLSAGQKKRLALARLWLS 154 (214)
T ss_pred EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHc-----------CChhhccCChhhCCHHHHHHHHHHHHHhc
Confidence 99999988876 99999864211 1 112223333333 33333455557899999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeC
Q 001580 820 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDS 875 (1050)
Q Consensus 820 ~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~ 875 (1050)
+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++++.
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 155 PAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999999999998754 47899999999999977 999999864
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=369.31 Aligned_cols=212 Identities=22% Similarity=0.358 Sum_probs=177.2
Q ss_pred EEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChH-HHhhheEEE
Q 001580 668 FEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM-DLRKILGII 746 (1050)
Q Consensus 668 ~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~-~~r~~i~~v 746 (1050)
++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.. .+++.++|+
T Consensus 1 ~~nl~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CCceEEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 3689999964 3699999999999999999999999999999999999999999999999998765543 356789999
Q ss_pred cCCcccccc-cHHHhcccCCC------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHcc
Q 001580 747 PQSPVLFSG-TVRFNLDPFSE------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 819 (1050)
Q Consensus 747 ~Q~~~lf~~-tv~~nl~~~~~------~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~ 819 (1050)
||++.++.. |+++|+.+... ....+.. ..+.++++.+ |++........+|||||||||+|||||+.
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~~ 151 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMY-----RDTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFSY 151 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHH-----HHHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHHh
Confidence 999987754 99999975321 0111111 1233444443 55555566677899999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001580 820 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 888 (1050)
Q Consensus 820 ~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 888 (1050)
+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++++.. ||+|++|++|++++.|+++++.
T Consensus 152 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 152 NAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 999999999999999999999999998864 47899999999999876 9999999999999999988763
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-37 Score=333.60 Aligned_cols=199 Identities=28% Similarity=0.359 Sum_probs=165.8
Q ss_pred CCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE-------EeCcEEEE
Q 001580 39 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------IRGTVAYV 111 (1050)
Q Consensus 39 ~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------~~~~i~~v 111 (1050)
.+.|+++|++++|+. +++|+++||+|++|++++|+|+||||||||+++|+|+++|++|.+.. .+..++|+
T Consensus 10 ~~~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v 86 (257)
T PRK11247 10 GTPLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLM 86 (257)
T ss_pred CCcEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEE
Confidence 456999999999963 57999999999999999999999999999999999999999887642 13359999
Q ss_pred ecCCCCCc-ccHHHHhccCCCC-CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEE
Q 001580 112 PQVSWIFN-ATVRDNILFGSAF-EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 189 (1050)
Q Consensus 112 ~Q~~~l~~-~TV~eni~~g~~~-~~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vl 189 (1050)
+|++.++. .||+||+.++... ...+....++..++.+.. .....+|||||||||+|||||+.+|+++
T Consensus 87 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGqkqrl~laraL~~~p~ll 155 (257)
T PRK11247 87 FQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRA-----------NEWPAALSGGQKQRVALARALIHRPGLL 155 (257)
T ss_pred ecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99998874 7999999876321 123344455555554433 2344689999999999999999999999
Q ss_pred EEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChh
Q 001580 190 IFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFE 251 (1050)
Q Consensus 190 lLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 251 (1050)
||||||++||+.++..+.+.+.+... .|+|+|+||||++++.. ||+|++|++|+++++++.+
T Consensus 156 lLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 156 LLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999998876533 58999999999999865 7999999999999877654
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-37 Score=337.87 Aligned_cols=208 Identities=30% Similarity=0.453 Sum_probs=172.9
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE------------EeCc
Q 001580 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 107 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 107 (1050)
+.++++|++|.|+.. .+++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|.+.. .+..
T Consensus 4 ~~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13635 4 EIIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQ 82 (279)
T ss_pred ceEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhh
Confidence 368999999999632 357999999999999999999999999999999999999999886532 1235
Q ss_pred EEEEecCCC--CCcccHHHHhccCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHH
Q 001580 108 VAYVPQVSW--IFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 178 (1050)
Q Consensus 108 i~~v~Q~~~--l~~~TV~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~L 178 (1050)
|||++|++. ++..||.||+.++.. ... ++....++..++...++..+ .+|||||||||+|
T Consensus 83 i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~l 151 (279)
T PRK13635 83 VGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAI 151 (279)
T ss_pred eEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHH
Confidence 999999983 567899999987521 121 23444556666665544433 5899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccC-CcEEEEeccCcchhhhcCEEEEEcCCeEeeccChhhhhcCh
Q 001580 179 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNG 257 (1050)
Q Consensus 179 AraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~-g~t~ilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 257 (1050)
||||+.+|+++||||||++||+.+++++++.+.+...+ |.|+|++||+++++..||+|++|++|++++.|+.+++....
T Consensus 152 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13635 152 AGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSG 231 (279)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcCH
Confidence 99999999999999999999999999999988776544 89999999999998889999999999999999988876654
Q ss_pred HH
Q 001580 258 EL 259 (1050)
Q Consensus 258 ~~ 259 (1050)
..
T Consensus 232 ~~ 233 (279)
T PRK13635 232 HM 233 (279)
T ss_pred HH
Confidence 43
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=344.63 Aligned_cols=202 Identities=25% Similarity=0.395 Sum_probs=166.5
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE-----------EeCcE
Q 001580 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTV 108 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i 108 (1050)
..|+++|++++|+. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. .+..+
T Consensus 3 ~~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i 79 (303)
T TIGR01288 3 VAIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAI 79 (303)
T ss_pred cEEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcE
Confidence 35899999999963 56999999999999999999999999999999999999999886543 13459
Q ss_pred EEEecCCCCC-cccHHHHhccC-C--CCCHH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHH
Q 001580 109 AYVPQVSWIF-NATVRDNILFG-S--AFEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 180 (1050)
Q Consensus 109 ~~v~Q~~~l~-~~TV~eni~~g-~--~~~~~----~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAr 180 (1050)
||+||++.++ ..||+||+.+. . ..+.. +....++..++.+.. .....+|||||||||+|||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~ 148 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA-----------DVRVALLSGGMKRRLTLAR 148 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHh-----------cCchhhCCHHHHHHHHHHH
Confidence 9999999886 68999999742 1 11211 122233333433222 2334689999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhhhc
Q 001580 181 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 255 (1050)
Q Consensus 181 aL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 255 (1050)
||+.+|+++||||||++||+.+++++++.+.+...+|+|+|++||+++++.. ||++++|++|++++.|+++++..
T Consensus 149 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 149 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999887765568999999999999875 89999999999999999887653
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=313.84 Aligned_cols=213 Identities=26% Similarity=0.448 Sum_probs=176.0
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE-------------EeC
Q 001580 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRG 106 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~ 106 (1050)
++++++|++..|.. -++|++|||++++||+++|+|+||+||||||++|+|..++.+|.+.. .+.
T Consensus 2 ~mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~ 78 (237)
T COG0410 2 PMLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARL 78 (237)
T ss_pred CceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhC
Confidence 46899999999973 57999999999999999999999999999999999999998876643 233
Q ss_pred cEEEEecCCCCC-cccHHHHhccCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccC
Q 001580 107 TVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 185 (1050)
Q Consensus 107 ~i~~v~Q~~~l~-~~TV~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~ 185 (1050)
.|+||||.-.+| ..||+||+..|......+ ......+.+.++.+|.-. ...+.++.+|||||||.++|||||..+
T Consensus 79 Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~---~~~~~~~e~v~~lFP~Lk-er~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 79 GIAYVPEGRRIFPRLTVEENLLLGAYARRDK---EAQERDLEEVYELFPRLK-ERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred CeEeCcccccchhhCcHHHHHhhhhhccccc---ccccccHHHHHHHChhHH-HHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 599999998887 789999999884332210 001111334455555322 234667889999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHccccC-CcEEEEeccCcchhh-hcCEEEEEcCCeEeeccChhhhhcChHH
Q 001580 186 SDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNGEL 259 (1050)
Q Consensus 186 ~~vllLDEPts~LD~~~~~~l~~~l~~~~~~-g~t~ilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 259 (1050)
|++|+|||||.||-|...+.|++.+.+..++ |.||++|.++..++- .+||.++|++|+|+.+|+.+++..++..
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~~v 230 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPDV 230 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCHHH
Confidence 9999999999999999999999998887754 779999999999865 4799999999999999999999887654
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-37 Score=351.07 Aligned_cols=205 Identities=25% Similarity=0.394 Sum_probs=169.7
Q ss_pred CCCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE----------EeCc
Q 001580 38 GLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGT 107 (1050)
Q Consensus 38 ~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~ 107 (1050)
..+.|+++|++++|+. +++|+|+||++++|++++|+|||||||||||++|+|+.+|++|.+.. .++.
T Consensus 16 ~~~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ 92 (377)
T PRK11607 16 LTPLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRP 92 (377)
T ss_pred CCceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCC
Confidence 3456999999999963 46999999999999999999999999999999999999999876532 1235
Q ss_pred EEEEecCCCCC-cccHHHHhccCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHH
Q 001580 108 VAYVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 179 (1050)
Q Consensus 108 i~~v~Q~~~l~-~~TV~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LA 179 (1050)
||||+|++.+| ..||.|||.|+.. ... ++....++..++.+..+ ....+|||||||||+||
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~-----------~~~~~LSgGq~QRVaLA 161 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAK-----------RKPHQLSGGQRQRVALA 161 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHH
Confidence 99999999988 5799999998732 111 12333444445543333 23468999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhhhcC
Q 001580 180 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 256 (1050)
Q Consensus 180 raL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 256 (1050)
|||+.+|++|||||||++||+..++++.+.+.+..+ .|.|+|+||||++++.. +|+|++|++|++++.|+++++..+
T Consensus 162 RAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~ 240 (377)
T PRK11607 162 RSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH 240 (377)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999887766543 48999999999999764 899999999999999999887654
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-37 Score=330.58 Aligned_cols=198 Identities=27% Similarity=0.413 Sum_probs=161.7
Q ss_pred EEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCC-----CCCCCCeeE-------------
Q 001580 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL-----PPVSDASAV------------- 103 (1050)
Q Consensus 42 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~-----~~~~g~~~~------------- 103 (1050)
|+++|++|+|+. +++|+|+||++++|++++|+|+||||||||+++|+|++ +|++|.+..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 578999999963 47999999999999999999999999999999999999 888876432
Q ss_pred -EeCcEEEEecCCCCCcccHHHHhccCCCC----C----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHH
Q 001580 104 -IRGTVAYVPQVSWIFNATVRDNILFGSAF----E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 174 (1050)
Q Consensus 104 -~~~~i~~v~Q~~~l~~~TV~eni~~g~~~----~----~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrq 174 (1050)
.+..++|++|++.++..||+||+.++... . .++....++..++.+..+..+. +.+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 12359999999988888999999875321 1 1223334444454433222110 3689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhh
Q 001580 175 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 252 (1050)
Q Consensus 175 Rv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 252 (1050)
||+|||||+.+|+++||||||++||+.+++++++.+.+...+ +|+|++|||++++.. ||++++|++|++++.|++++
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999999999999999999999999999999988776555 899999999999865 89999999999999887654
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-37 Score=340.15 Aligned_cols=202 Identities=29% Similarity=0.505 Sum_probs=172.1
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeEE-----------eCcE
Q 001580 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-----------RGTV 108 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~-----------~~~i 108 (1050)
..++++|+++.|+. ++.+|+||||++++|+++||+||||||||||+|+|+|++.|++|.+... +.+|
T Consensus 3 ~~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~i 80 (293)
T COG1131 3 EVIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRI 80 (293)
T ss_pred ceeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhhe
Confidence 35789999999962 3579999999999999999999999999999999999999998876442 2359
Q ss_pred EEEecCCCCC-cccHHHHhccCC-----C--CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHH
Q 001580 109 AYVPQVSWIF-NATVRDNILFGS-----A--FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 180 (1050)
Q Consensus 109 ~~v~Q~~~l~-~~TV~eni~~g~-----~--~~~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAr 180 (1050)
||+||+|.++ ..||+||+.|.. . .+.+++++.++..+|.+.. +....+||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHH
Confidence 9999999886 789999998742 1 1234556666666665522 2234689999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCC-cEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhhh
Q 001580 181 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG-KTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLS 254 (1050)
Q Consensus 181 aL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g-~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 254 (1050)
||+++|++|||||||+||||.++..+++.+.+...+| +||+++||.++.+.. ||+|++|++|+++++|+.+++.
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~ 225 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELK 225 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 9999999999999999999999999999988887776 799999999999987 8999999999999999887754
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=329.59 Aligned_cols=197 Identities=23% Similarity=0.359 Sum_probs=162.9
Q ss_pred EEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE-----------EeCcEEE
Q 001580 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVAY 110 (1050)
Q Consensus 42 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i~~ 110 (1050)
|+++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..++|
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEE
Confidence 578999999963 57999999999999999999999999999999999999999876532 1235999
Q ss_pred EecCCCCC-cccHHHHhccCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHH
Q 001580 111 VPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 182 (1050)
Q Consensus 111 v~Q~~~l~-~~TV~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL 182 (1050)
++|++.++ ..||+||+.++.. ... ++....++..++....+. ...+||||||||++|||||
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADR-----------LVKTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-----------ChhhCCHHHHHHHHHHHHH
Confidence 99999876 5799999976421 111 233444555555543332 2358999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccC-CcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhh
Q 001580 183 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 252 (1050)
Q Consensus 183 ~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~-g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 252 (1050)
+.+|+++||||||++||+.+++.+++.+.+...+ |+|+|++||+++++.. +|++++|++|++++.|++++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 9999999999999999999999999988776554 8999999999999876 79999999999998887655
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=312.95 Aligned_cols=212 Identities=24% Similarity=0.404 Sum_probs=172.0
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE-------------EeC
Q 001580 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRG 106 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~ 106 (1050)
..+.++|+.++|. +++++++|||++++||+|++.||||+||||.+.++.|+.+|++|.+.. .+-
T Consensus 3 ~~L~a~~l~K~y~---kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArl 79 (243)
T COG1137 3 STLVAENLAKSYK---KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL 79 (243)
T ss_pred cEEEehhhhHhhC---CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhc
Confidence 4578999999996 468999999999999999999999999999999999999999987643 123
Q ss_pred cEEEEecCCCCC-cccHHHHhccCCCCC---HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHH
Q 001580 107 TVAYVPQVSWIF-NATVRDNILFGSAFE---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 182 (1050)
Q Consensus 107 ~i~~v~Q~~~l~-~~TV~eni~~g~~~~---~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL 182 (1050)
.|||+||+|.+| ..||+|||..-.+.. ....++..+...|.+.+..-. .....+.+||||+|+|+.|||||
T Consensus 80 GigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~h-----lr~~~a~sLSGGERRR~EIARaL 154 (243)
T COG1137 80 GIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITH-----LRDSKAYSLSGGERRRVEIARAL 154 (243)
T ss_pred CcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHH-----HhcCcccccccchHHHHHHHHHH
Confidence 499999999999 789999997543221 111112222223333332211 12345679999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcc-hhhhcCEEEEEcCCeEeeccChhhhhcChHH
Q 001580 183 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLH-FLSQVDRIILVHEGMVKEEGTFEDLSNNGEL 259 (1050)
Q Consensus 183 ~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~-~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 259 (1050)
+.+|+.++|||||+|+||.+...|.+.+..+..+|..++++.|+.. .++-|||.+++.+|++..+|+++++.+++..
T Consensus 155 a~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~~V 232 (243)
T COG1137 155 AANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNEDV 232 (243)
T ss_pred hcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcChhh
Confidence 9999999999999999999999998877667778999999999975 5788999999999999999999999887654
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-37 Score=328.84 Aligned_cols=198 Identities=29% Similarity=0.411 Sum_probs=161.4
Q ss_pred EEEEeEEEEeCCCC-CCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE-------EeCcEEEEec
Q 001580 42 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------IRGTVAYVPQ 113 (1050)
Q Consensus 42 i~~~~~~f~~~~~~-~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------~~~~i~~v~Q 113 (1050)
|+++|++++|+... .+++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+.. .+..++||+|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 47899999996311 157999999999999999999999999999999999999999886543 1346999999
Q ss_pred CCCCCc-ccHHHHhccCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccC
Q 001580 114 VSWIFN-ATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 185 (1050)
Q Consensus 114 ~~~l~~-~TV~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~ 185 (1050)
++.++. .||+||+.++.. ... ++....++..++.+..+. ...+||||||||++|||||+.+
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrl~la~al~~~ 149 (220)
T cd03293 81 QDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENA-----------YPHQLSGGMRQRVALARALAVD 149 (220)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhC-----------CcccCCHHHHHHHHHHHHHHcC
Confidence 998874 799999986521 111 223344555555443332 3358999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhh-cCEEEEEc--CCeEeeccCh
Q 001580 186 SDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVH--EGMVKEEGTF 250 (1050)
Q Consensus 186 ~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~-~d~i~~l~--~G~i~~~g~~ 250 (1050)
|+++||||||++||+.+++.+++.+.+... .|+|+|++||+++++.. ||++++|+ +|++++.++.
T Consensus 150 p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 150 PDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999998876543 48999999999998765 79999999 7999887654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-37 Score=330.74 Aligned_cols=199 Identities=24% Similarity=0.385 Sum_probs=162.3
Q ss_pred CcEEEEeEEEEeCCCC-CCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeEE--------------
Q 001580 40 PAISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------------- 104 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~-~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~-------------- 104 (1050)
+.++++|++|.|+... .+++|+++||+|++|++++|+|+||||||||+++|+|+++|++|.+..-
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 4689999999997422 2579999999999999999999999999999999999999998865321
Q ss_pred --eCcEEEEecCCCCC-cccHHHHhccCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHH
Q 001580 105 --RGTVAYVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 174 (1050)
Q Consensus 105 --~~~i~~v~Q~~~l~-~~TV~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrq 174 (1050)
+..|+|++|++.++ ..||+||+.++.. ... ++....++..++.+. ......+|||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~~q 152 (233)
T PRK11629 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHR-----------ANHRPSELSGGERQ 152 (233)
T ss_pred HHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHH
Confidence 13599999999877 5699999986421 111 123334444444332 23344689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhhcCEEEEEcCCeEeeccC
Q 001580 175 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 249 (1050)
Q Consensus 175 Rv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~~d~i~~l~~G~i~~~g~ 249 (1050)
|++|||||+.+|++|||||||++||+.+++++.+.+.+... +|+|+|++||+++++..+|++++|++|++++.++
T Consensus 153 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 153 RVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999998876543 5899999999999998889999999999987664
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-37 Score=333.72 Aligned_cols=199 Identities=29% Similarity=0.440 Sum_probs=163.5
Q ss_pred EEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE---------------EeC
Q 001580 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IRG 106 (1050)
Q Consensus 42 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------~~~ 106 (1050)
|+++|++++|+. ++++|+|+||++++|++++|+||||||||||+++|+|.++|++|.+.. .+.
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 789999999961 357999999999999999999999999999999999999999876532 123
Q ss_pred cEEEEecCCCCC-cccHHHHhccCCCC------------CH---HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCH
Q 001580 107 TVAYVPQVSWIF-NATVRDNILFGSAF------------EP---ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISG 170 (1050)
Q Consensus 107 ~i~~v~Q~~~l~-~~TV~eni~~g~~~------------~~---~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSG 170 (1050)
.++|++|++.++ ..||+||+.++... .. ++....++..++.+.+ .....+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKA-----------YQRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCH
Confidence 499999999876 57999999875311 11 1222333444443322 334568999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhh-cCEEEEEcCCeEeecc
Q 001580 171 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEG 248 (1050)
Q Consensus 171 GqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g 248 (1050)
||||||+|||||+.+|+++||||||++||+.+++++.+.+.+... .|+|+|++||+++++.. ||++++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999999998876644 48999999999999865 8999999999999999
Q ss_pred Chhhh
Q 001580 249 TFEDL 253 (1050)
Q Consensus 249 ~~~~l 253 (1050)
+++++
T Consensus 229 ~~~~~ 233 (243)
T TIGR02315 229 APSEL 233 (243)
T ss_pred CHHHh
Confidence 88775
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=336.91 Aligned_cols=203 Identities=32% Similarity=0.466 Sum_probs=168.1
Q ss_pred cEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE-------------EeCc
Q 001580 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 107 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~ 107 (1050)
+++++|++|+|+. ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+.. .+..
T Consensus 1 ml~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (274)
T PRK13644 1 MIRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKL 78 (274)
T ss_pred CEEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhh
Confidence 3789999999962 346999999999999999999999999999999999999999886532 1234
Q ss_pred EEEEecCCC--CCcccHHHHhccCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHH
Q 001580 108 VAYVPQVSW--IFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 178 (1050)
Q Consensus 108 i~~v~Q~~~--l~~~TV~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~L 178 (1050)
+||++|+|. ++..||.||+.++.. ... +++...++..++.+..+ .....||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrv~l 147 (274)
T PRK13644 79 VGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRH-----------RSPKTLSGGQGQCVAL 147 (274)
T ss_pred eEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhc-----------CCcccCCHHHHHHHHH
Confidence 999999985 457899999987632 121 22333445555544333 3346899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhhcCEEEEEcCCeEeeccChhhhhcC
Q 001580 179 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 256 (1050)
Q Consensus 179 AraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 256 (1050)
||||+.+|+++||||||++||+.++..+++.+.+...+|.|+|++||+++.+..||++++|++|++++.|+.+++...
T Consensus 148 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 148 AGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999887665568999999999999988999999999999999998887654
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=329.10 Aligned_cols=192 Identities=28% Similarity=0.426 Sum_probs=156.5
Q ss_pred EEEEeEEEEeCCCC-CCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE----------------E
Q 001580 42 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------I 104 (1050)
Q Consensus 42 i~~~~~~f~~~~~~-~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------------~ 104 (1050)
|+++|++++|+... .+++|+++||++++|++++|+||||||||||+++|+|+++|++|.+.. .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 47899999996321 157999999999999999999999999999999999999999876532 1
Q ss_pred eCcEEEEecCCCCCc-ccHHHHhccCCCC---CH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHH
Q 001580 105 RGTVAYVPQVSWIFN-ATVRDNILFGSAF---EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 176 (1050)
Q Consensus 105 ~~~i~~v~Q~~~l~~-~TV~eni~~g~~~---~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv 176 (1050)
+..++|++|++.++. .||+||+.++... .. +++.+.++..++.... .....+|||||||||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRL-----------NHYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhh-----------hcChhhcCHHHHHHH
Confidence 235999999998874 6999999875321 11 1233344444443322 334468999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhhcCEEEEEcCCeE
Q 001580 177 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMV 244 (1050)
Q Consensus 177 ~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~~d~i~~l~~G~i 244 (1050)
+|||||+.+|+++||||||++||+.+++++++.+.+... .|+|+|+|||+++++..||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999998877654 58999999999999887899999999863
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=324.60 Aligned_cols=189 Identities=30% Similarity=0.461 Sum_probs=157.6
Q ss_pred EEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE---------EeCcEEEEecC
Q 001580 44 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------IRGTVAYVPQV 114 (1050)
Q Consensus 44 ~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------~~~~i~~v~Q~ 114 (1050)
++|++++|+.. +++|+++||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..++|++|+
T Consensus 2 ~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~ 79 (205)
T cd03226 2 IENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQD 79 (205)
T ss_pred cccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecC
Confidence 68999999631 57999999999999999999999999999999999999999886542 12359999999
Q ss_pred CC--CCcccHHHHhccCCCC---CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEE
Q 001580 115 SW--IFNATVRDNILFGSAF---EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 189 (1050)
Q Consensus 115 ~~--l~~~TV~eni~~g~~~---~~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vl 189 (1050)
+. ++..||+||+.++... ...+..+.++..++.+..+. ...+||||||||++|||||+.+|+++
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~laral~~~p~ll 148 (205)
T cd03226 80 VDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKER-----------HPLSLSGGQKQRLAIAAALLSGKDLL 148 (205)
T ss_pred hhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCC-----------CchhCCHHHHHHHHHHHHHHhCCCEE
Confidence 73 5678999999875321 12344555666666544333 33589999999999999999999999
Q ss_pred EEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEe
Q 001580 190 IFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVK 245 (1050)
Q Consensus 190 lLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~ 245 (1050)
||||||++||+.+++.+.+.+.....+|+|+|++||+++++.. ||++++|++|+++
T Consensus 149 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 149 IFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999887765568999999999999875 7999999999864
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-37 Score=366.85 Aligned_cols=211 Identities=26% Similarity=0.368 Sum_probs=175.8
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChH-HHhhhe
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM-DLRKIL 743 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~-~~r~~i 743 (1050)
.++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...++. .+|++|
T Consensus 4 ~l~~~~l~~~~~~~--~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 4 YLSFDGIGKTFPGV--KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred eEEEeeeEEEECCE--EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 38999999999643 699999999999999999999999999999999999999999999999998755443 457789
Q ss_pred EEEcCCcccccc-cHHHhcccCCC------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001580 744 GIIPQSPVLFSG-TVRFNLDPFSE------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 816 (1050)
Q Consensus 744 ~~v~Q~~~lf~~-tv~~nl~~~~~------~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAra 816 (1050)
+|+||++.+|.. |+.+|+.+... ....+.. ..+.++++.+ |++........+||||||||++||||
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lara 154 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLN-----YEAREQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAKA 154 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHH-----HHHHHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHHH
Confidence 999999988875 99999975321 1111111 1233445543 44434455667899999999999999
Q ss_pred HccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecCh
Q 001580 817 LLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 884 (1050)
Q Consensus 817 ll~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~ 884 (1050)
|+.+|+||||||||++||+.+.+.+.+.|+++. +++|||+|||+++++.. ||+|++|++|+++..++.
T Consensus 155 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 155 LARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 999999999999999999999999999999864 47899999999999877 999999999999876653
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=330.20 Aligned_cols=203 Identities=25% Similarity=0.395 Sum_probs=168.2
Q ss_pred cEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE------------EeCcE
Q 001580 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 108 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 108 (1050)
.++++|++|+|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4899999999963 47999999999999999999999999999999999999999886532 12359
Q ss_pred EEEecCCCCCcccHHHHhccCCCCC---HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccC
Q 001580 109 AYVPQVSWIFNATVRDNILFGSAFE---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 185 (1050)
Q Consensus 109 ~~v~Q~~~l~~~TV~eni~~g~~~~---~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~ 185 (1050)
+|++|++.++..||+||+.++.... ..+....++..++... .......+||||||||++|||||+.+
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKE----------YATRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHH----------HhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 9999999988889999998763221 2233344444444311 11234568999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhhhcC
Q 001580 186 SDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 256 (1050)
Q Consensus 186 ~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 256 (1050)
|+++||||||++||+.+++++++.+..... .|+|+|++||+++++.. ||+|++|++|++++.|+++++...
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 999999999999999999999998876544 48999999999999875 799999999999999998887654
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-37 Score=331.00 Aligned_cols=202 Identities=28% Similarity=0.445 Sum_probs=165.2
Q ss_pred EEEEeEEEEeCCCC-CCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE---------------Ee
Q 001580 42 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IR 105 (1050)
Q Consensus 42 i~~~~~~f~~~~~~-~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------~~ 105 (1050)
|+++|+++.|+... .+++|+++||++++|++++|+|+||||||||+++|+|.++|++|.+.. .+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996321 127999999999999999999999999999999999999999886532 02
Q ss_pred CcEEEEecCCCCC-cccHHHHhccCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHH
Q 001580 106 GTVAYVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 177 (1050)
Q Consensus 106 ~~i~~v~Q~~~l~-~~TV~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~ 177 (1050)
..++|+||++.++ ..|++||+.++.. ... .+....++..++.+..+ ....+|||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKAD-----------AYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-----------cChhhCCHHHHHHHH
Confidence 4599999999887 5799999986421 121 12233344444443332 334689999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccC-CcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhhh
Q 001580 178 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLS 254 (1050)
Q Consensus 178 LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~-g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 254 (1050)
|||||+.+|+++||||||++||+.++..+++.+.....+ |+|+|++||+++++.. ||++++|++|++++.|+.+++.
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999988776544 8999999999999875 7999999999999999877764
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=322.71 Aligned_cols=193 Identities=26% Similarity=0.333 Sum_probs=162.4
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
++++|+++.|++. .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. . ..++.++|
T Consensus 3 l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~-~~~~~~~~ 77 (207)
T PRK13539 3 LEGEDLACVRGGR--VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--P-DVAEACHY 77 (207)
T ss_pred EEEEeEEEEECCe--EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--h-hhHhhcEE
Confidence 7899999999643 69999999999999999999999999999999999999999999999998752 2 27888999
Q ss_pred EcCCcccc-cccHHHhcccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 001580 746 IPQSPVLF-SGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 821 (1050)
Q Consensus 746 v~Q~~~lf-~~tv~~nl~~~~---~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p 821 (1050)
++|++.++ ..|+++|+.+.. ...+.++.++++..++.++. .....+||||||||++||||++++|
T Consensus 78 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la~al~~~p 146 (207)
T PRK13539 78 LGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLA-----------HLPFGYLSAGQKRRVALARLLVSNR 146 (207)
T ss_pred ecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHH-----------cCChhhcCHHHHHHHHHHHHHhcCC
Confidence 99988776 469999986432 12234455556665554432 2334579999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhhcCEEEEEeC
Q 001580 822 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLLDS 875 (1050)
Q Consensus 822 ~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~vl~~ 875 (1050)
++|||||||++||+.+.+.+++.|++.. +++|+|++||+++++.. |+++-++.
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 147 PIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 9999999999999999999999998753 57899999999999987 99887743
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-37 Score=374.46 Aligned_cols=220 Identities=24% Similarity=0.346 Sum_probs=177.5
Q ss_pred cEEEEEEEEEeCCC--CCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecC----------
Q 001580 665 SIKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA---------- 732 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~--~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~---------- 732 (1050)
.|+++|++++|+.. ..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 49999999999632 236999999999999999999999999999999999999999999999997552
Q ss_pred CCChH---HHh-hheEEEcCCc--cccc-ccHHHhcccCC----CCCHHHHHHHHHHhcHHHHHHHccCCcc---hhhhc
Q 001580 733 KFGLM---DLR-KILGIIPQSP--VLFS-GTVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLD---AQVSE 798 (1050)
Q Consensus 733 ~~~~~---~~r-~~i~~v~Q~~--~lf~-~tv~~nl~~~~----~~~~~~~~~~l~~~~~~~~i~~~p~gl~---t~v~~ 798 (1050)
+.+.. .+| +.||||+|+| .++. .||.+|+.+.. .....+.. ..+.+.++.+ |+. .....
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gL~~~~~~~~~ 164 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAM-----VEAKRMLDQV--RIPEAQTILSR 164 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHC--CCCChhhHHhC
Confidence 22322 233 4799999998 5665 49999986421 11111111 1122333332 442 34566
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-C-CcEEEEeecCchhhhh-cCEEEEEeC
Q 001580 799 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-K-SCTMLIIAHRLNTIID-CDRILLLDS 875 (1050)
Q Consensus 799 ~~~~LSgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~-~d~i~vl~~ 875 (1050)
...+|||||||||+|||||+.+|+||||||||++||+.+.+.+.+.|+++. + ++|||+||||++.+.. ||||++|++
T Consensus 165 ~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~ 244 (623)
T PRK10261 165 YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQ 244 (623)
T ss_pred CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeC
Confidence 678899999999999999999999999999999999999999999999875 3 7899999999999877 999999999
Q ss_pred CEEEEecChhHHhhcC
Q 001580 876 GRVLEYDTPEELLSNE 891 (1050)
Q Consensus 876 G~i~~~g~~~el~~~~ 891 (1050)
|++++.|+++++....
T Consensus 245 G~i~~~g~~~~~~~~~ 260 (623)
T PRK10261 245 GEAVETGSVEQIFHAP 260 (623)
T ss_pred CeecccCCHHHhhcCC
Confidence 9999999999987644
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=306.27 Aligned_cols=202 Identities=24% Similarity=0.383 Sum_probs=170.4
Q ss_pred cEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE-----------EeCcEE
Q 001580 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVA 109 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i~ 109 (1050)
++++.+++++|++ ...+++||||++++|+++||.|+|||||||+|++|++++.|++|.+.. .+++||
T Consensus 1 Ml~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IG 78 (245)
T COG4555 1 MLEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIG 78 (245)
T ss_pred CeeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcc
Confidence 4789999999985 234899999999999999999999999999999999999999987643 345799
Q ss_pred EEecCCCCC-cccHHHHhccCCC-CC------HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHH
Q 001580 110 YVPQVSWIF-NATVRDNILFGSA-FE------PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 181 (1050)
Q Consensus 110 ~v~Q~~~l~-~~TV~eni~~g~~-~~------~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAra 181 (1050)
+++-+.-++ ..|++|||.|... ++ +.+.....+..++.+-++ .+..++|-|+||||+||||
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~-----------rRv~~~S~G~kqkV~iARA 147 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD-----------RRVGEFSTGMKQKVAIARA 147 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHH-----------HHHhhhchhhHHHHHHHHH
Confidence 999777776 7899999986421 11 223334444445444443 3456899999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhh-hcCEEEEEcCCeEeeccChhhhhc
Q 001580 182 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 255 (1050)
Q Consensus 182 L~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 255 (1050)
|+++|++++|||||||||..+.+.+.+.+...+..|+++|+.||.++++. .||+++++++|+++..|+.+++..
T Consensus 148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 99999999999999999999999999998888888999999999999998 589999999999999999887653
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=323.77 Aligned_cols=199 Identities=48% Similarity=0.778 Sum_probs=171.5
Q ss_pred EEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE----------------EeC
Q 001580 43 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------IRG 106 (1050)
Q Consensus 43 ~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------------~~~ 106 (1050)
.+.|++|.|+.+ +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+.
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 578999999743 57999999999999999999999999999999999999998875432 124
Q ss_pred cEEEEecCCCCCcccHHHHhccCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCC
Q 001580 107 TVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 186 (1050)
Q Consensus 107 ~i~~v~Q~~~l~~~TV~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~ 186 (1050)
.++|++|++.+++.|++||+.++.....++....++.+++.+.++..+.++.+.++....+|||||||||+|||||+.+|
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 59999999998888999999986544444556677788888888888888888888888999999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHH--HHHccccCCcEEEEeccCcchhhhcCEEEEEcCCe
Q 001580 187 DVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGM 243 (1050)
Q Consensus 187 ~vllLDEPts~LD~~~~~~l~~--~l~~~~~~g~t~ilvtH~~~~l~~~d~i~~l~~G~ 243 (1050)
+++||||||++||+.++..+++ .+......|.|+|++||+.+++..+|++++|++|.
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 9999999999999999999987 33333345899999999999998899999999873
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=323.46 Aligned_cols=193 Identities=23% Similarity=0.375 Sum_probs=161.8
Q ss_pred EEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeEE----------eCcEEEE
Q 001580 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI----------RGTVAYV 111 (1050)
Q Consensus 42 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~----------~~~i~~v 111 (1050)
|+++|++|+|+. +++|+++||++++|++++|+|+||||||||+++|+|+.+|++|.+... +..++||
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 77 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGAL 77 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEe
Confidence 478999999962 579999999999999999999999999999999999999998765331 2359999
Q ss_pred ecCCCCC-cccHHHHhccCCC---CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 001580 112 PQVSWIF-NATVRDNILFGSA---FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 187 (1050)
Q Consensus 112 ~Q~~~l~-~~TV~eni~~g~~---~~~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~ 187 (1050)
+|++.++ ..||+||+.++.. .+.++....++..++.+..+ ....+|||||||||+|||||+.+|+
T Consensus 78 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~~p~ 146 (208)
T cd03268 78 IEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAK-----------KKVKGFSLGMKQRLGIALALLGNPD 146 (208)
T ss_pred cCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHh-----------hhHhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999876 6899999976521 23344555566666654433 2346899999999999999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeecc
Q 001580 188 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEG 248 (1050)
Q Consensus 188 vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g 248 (1050)
++||||||++||+.+++.+++.+.+...+|+|+|++||+++++.. +|++++|++|++++.|
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999887665568999999999999875 7999999999988654
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=367.56 Aligned_cols=219 Identities=25% Similarity=0.437 Sum_probs=176.9
Q ss_pred cEEEEEEEEEeCCC--CCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccC-----CccEEEECCeecCCCChH
Q 001580 665 SIKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKFGLM 737 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~--~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p-----~~G~i~~~g~~i~~~~~~ 737 (1050)
.++++|++++|+.+ ..++|+|+||+|.+||++||+||||||||||+++|+|+++| ++|+|.++|.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 38999999999631 23699999999999999999999999999999999999987 799999999999876644
Q ss_pred H---Hh-hheEEEcCCcc--ccc-ccHHHhcccC----CCCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCC
Q 001580 738 D---LR-KILGIIPQSPV--LFS-GTVRFNLDPF----SEHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 802 (1050)
Q Consensus 738 ~---~r-~~i~~v~Q~~~--lf~-~tv~~nl~~~----~~~~~----~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~ 802 (1050)
. +| +++||+||++. ++. .|+.+|+.+. ..... +++.++++..++.+. .........+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~--------~~~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQA--------AKRLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------HHHHhhCCcc
Confidence 3 33 57999999985 444 4888887521 11111 223333333333210 1123555678
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEE
Q 001580 803 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVL 879 (1050)
Q Consensus 803 LSgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~ 879 (1050)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|||+|||+++.+.. ||||++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999864 37899999999999876 9999999999999
Q ss_pred EecChhHHhhcC
Q 001580 880 EYDTPEELLSNE 891 (1050)
Q Consensus 880 ~~g~~~el~~~~ 891 (1050)
+.|+++++....
T Consensus 237 ~~g~~~~~~~~~ 248 (529)
T PRK15134 237 EQNRAATLFSAP 248 (529)
T ss_pred EeCCHHHHhhCC
Confidence 999999987543
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-37 Score=321.99 Aligned_cols=192 Identities=22% Similarity=0.308 Sum_probs=159.0
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
++++|++++|++. ++|+|+||+|.+||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGER--MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECCE--EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEE
Confidence 4689999999653 6999999999999999999999999999999999999999999999999987654 356788999
Q ss_pred EcCCccccc-ccHHHhcccCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 001580 746 IPQSPVLFS-GTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 821 (1050)
Q Consensus 746 v~Q~~~lf~-~tv~~nl~~~~~---~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p 821 (1050)
+||++.+|. .|+++|+.+... ..+..+.++++..++.++ ......+||||||||++||||++++|
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la~al~~~p 146 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGF-----------EDLPAAQLSAGQQRRLALARLWLSRA 146 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHH-----------hcCChhhcCHHHHHHHHHHHHHhcCC
Confidence 999998886 599999864321 112235555555555443 33445689999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhhcCEEEE
Q 001580 822 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILL 872 (1050)
Q Consensus 822 ~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~v 872 (1050)
++|||||||++||+.+.+.+++.|+++. .+.|+|++||+...+ .|++++.
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~-~~~~~~~ 197 (198)
T TIGR01189 147 PLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL-VEARELR 197 (198)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc-cceEEee
Confidence 9999999999999999999999999863 578999999998544 2566654
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=366.01 Aligned_cols=213 Identities=23% Similarity=0.406 Sum_probs=176.1
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccC--CccEEEECCeecCCCChHH-Hhhh
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL--ERGRILIDGFDIAKFGLMD-LRKI 742 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p--~~G~i~~~g~~i~~~~~~~-~r~~ 742 (1050)
++++|++++|++ .++|+|+||++++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+... .++.
T Consensus 2 l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 2 LEMKGIVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEEEeEEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 789999999964 3699999999999999999999999999999999999987 7999999999998766554 4567
Q ss_pred eEEEcCCcccccc-cHHHhcccCCC-------CCHHHHHHHHHHhcHHHHHHHccCCcchhh-hcCCCCCChhHHHHHHH
Q 001580 743 LGIIPQSPVLFSG-TVRFNLDPFSE-------HSDADLWEALERAHLKDAIRRNSLGLDAQV-SEAGENFSVGQRQLLSL 813 (1050)
Q Consensus 743 i~~v~Q~~~lf~~-tv~~nl~~~~~-------~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v-~~~~~~LSgGq~qrl~l 813 (1050)
++|+||++.+|.. |+++|+.+... ....+.. ..+.++++.+ |+.... .....+|||||||||+|
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~i 152 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMY-----LRAKNLLREL--QLDADNVTRPVGDYGGGQQQLVEI 152 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHH-----HHHHHHHHHc--CCCCCcccCchhhCCHHHHHHHHH
Confidence 9999999988765 99999865321 1111111 1233444443 333222 23356799999999999
Q ss_pred HHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 001580 814 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 887 (1050)
Q Consensus 814 Arall~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 887 (1050)
||||+.+|+||||||||++||+.+...+.+.|+++. +++|||+|||+++++.. ||+|++|++|+++..|+++++
T Consensus 153 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 153 AKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 999999999999999999999999999999998864 47899999999999977 999999999999999987765
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=337.77 Aligned_cols=206 Identities=25% Similarity=0.439 Sum_probs=167.2
Q ss_pred cEEEEeEEEEeCCCC--CCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE---------------
Q 001580 41 AISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 103 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~--~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------- 103 (1050)
.|+++|++++|+... .+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.+..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 478999999997321 257999999999999999999999999999999999999999886432
Q ss_pred -EeCcEEEEecCC--CCCcccHHHHhccCCC---CCHH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHH
Q 001580 104 -IRGTVAYVPQVS--WIFNATVRDNILFGSA---FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 173 (1050)
Q Consensus 104 -~~~~i~~v~Q~~--~l~~~TV~eni~~g~~---~~~~----~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqr 173 (1050)
.+..|+|++|+| .++..||.||+.++.. .... +....++.+++... .......+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LSgGq~ 151 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSED----------LISKSPFELSGGQM 151 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------HhhCCcccCCHHHH
Confidence 123599999998 4667899999987521 1211 22333444444311 12334578999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhh
Q 001580 174 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 252 (1050)
Q Consensus 174 qRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 252 (1050)
||++|||||+.+|++|||||||++||+.+++++.+.+.+...+|.|+|++||+++++.. ||++++|++|++++.|++++
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE 231 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999887765568999999999999865 79999999999999999888
Q ss_pred hhcC
Q 001580 253 LSNN 256 (1050)
Q Consensus 253 l~~~ 256 (1050)
+...
T Consensus 232 ~~~~ 235 (287)
T PRK13641 232 IFSD 235 (287)
T ss_pred HhcC
Confidence 7654
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=336.83 Aligned_cols=206 Identities=25% Similarity=0.419 Sum_probs=170.6
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE--------------Ee
Q 001580 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IR 105 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------~~ 105 (1050)
+.|+++|++|+|+. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+.. .+
T Consensus 4 ~~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~ 81 (283)
T PRK13636 4 YILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81 (283)
T ss_pred ceEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHH
Confidence 36999999999962 356999999999999999999999999999999999999999875432 12
Q ss_pred CcEEEEecCC--CCCcccHHHHhccCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHH
Q 001580 106 GTVAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 176 (1050)
Q Consensus 106 ~~i~~v~Q~~--~l~~~TV~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv 176 (1050)
..+||++|++ .++..||+||+.++.. ... ++...+++..++.... .....+||||||||+
T Consensus 82 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LS~G~~qrl 150 (283)
T PRK13636 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLK-----------DKPTHCLSFGQKKRV 150 (283)
T ss_pred hhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhh-----------hCCcccCCHHHHHHH
Confidence 3599999998 4568899999987521 121 2234445555554433 234568999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccC-CcEEEEeccCcchhh-hcCEEEEEcCCeEeeccChhhhh
Q 001580 177 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLS 254 (1050)
Q Consensus 177 ~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~-g~t~ilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~ 254 (1050)
+|||||+.+|++|||||||++||+.++..+++.+.+...+ |+|+|++||+++++. .|||+++|++|++++.|+++++.
T Consensus 151 ~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 230 (283)
T PRK13636 151 AIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230 (283)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999988766544 899999999999987 58999999999999999998887
Q ss_pred cChH
Q 001580 255 NNGE 258 (1050)
Q Consensus 255 ~~~~ 258 (1050)
....
T Consensus 231 ~~~~ 234 (283)
T PRK13636 231 AEKE 234 (283)
T ss_pred cCHH
Confidence 6543
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=320.93 Aligned_cols=197 Identities=29% Similarity=0.465 Sum_probs=169.8
Q ss_pred cEEEEEEEEEeCCCC-------CCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChH
Q 001580 665 SIKFEDVVLRYRPEL-------PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM 737 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~-------~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~ 737 (1050)
.++++|+++.|+... ..+++||||+|++||++||||.|||||||+-++|+|+++|++|+|.++|.|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 388999999995321 36899999999999999999999999999999999999999999999999986654
Q ss_pred HHhhheEEEcCCcccccccHHHhcccCCCCCHHHHHHHHHHhcHHH-HHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001580 738 DLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKD-AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 816 (1050)
Q Consensus 738 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~~~~~-~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAra 816 (1050)
.....+++.+.++.+++.+ ++.+. ...|||||+||++||||
T Consensus 82 ---------------------------~~~~~~~v~elL~~Vgl~~~~~~ry-----------PhelSGGQrQRi~IARA 123 (268)
T COG4608 82 ---------------------------KEERRERVLELLEKVGLPEEFLYRY-----------PHELSGGQRQRIGIARA 123 (268)
T ss_pred ---------------------------hhHHHHHHHHHHHHhCCCHHHhhcC-----------CcccCchhhhhHHHHHH
Confidence 1112345777777776643 44444 46899999999999999
Q ss_pred HccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 001580 817 LLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 893 (1050)
Q Consensus 817 ll~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~ 893 (1050)
|+-+|+++++|||||+||.-.++.+...|.++. .+-|.++||||++.+.. ||||.||..|+|+|.|+.+++..++..
T Consensus 124 Lal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~H 203 (268)
T COG4608 124 LALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLH 203 (268)
T ss_pred HhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCC
Confidence 999999999999999999999999999998865 37899999999999998 999999999999999999999998777
Q ss_pred hHHHHHHh
Q 001580 894 SFSKMVQS 901 (1050)
Q Consensus 894 ~~~~~~~~ 901 (1050)
.|.+..-+
T Consensus 204 pYTk~Ll~ 211 (268)
T COG4608 204 PYTKALLS 211 (268)
T ss_pred HHHHHHHH
Confidence 77765543
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-37 Score=331.87 Aligned_cols=199 Identities=27% Similarity=0.432 Sum_probs=162.7
Q ss_pred EEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE---------------EeC
Q 001580 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IRG 106 (1050)
Q Consensus 42 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------~~~ 106 (1050)
++++|++++|+. ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+.
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 478999999963 257999999999999999999999999999999999999998876432 123
Q ss_pred cEEEEecCCCCC-cccHHHHhccCCCC------------CH---HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCH
Q 001580 107 TVAYVPQVSWIF-NATVRDNILFGSAF------------EP---ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISG 170 (1050)
Q Consensus 107 ~i~~v~Q~~~l~-~~TV~eni~~g~~~------------~~---~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSG 170 (1050)
.++|+||++.++ ..||+||+.++... .. ++....++..++.. .....+.+|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLD-----------KAYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChh-----------hhCCCcccCCH
Confidence 599999999876 57999999865210 11 11222233333322 23345578999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhh-hcCEEEEEcCCeEeecc
Q 001580 171 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEG 248 (1050)
Q Consensus 171 GqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~-~~d~i~~l~~G~i~~~g 248 (1050)
||||||+|||||+.+|+++||||||++||+.+++.+++.+.+... .|+|+|++||+++++. .||++++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 999999999999999999999999999999999999998877644 4899999999999988 47999999999999999
Q ss_pred Chhhh
Q 001580 249 TFEDL 253 (1050)
Q Consensus 249 ~~~~l 253 (1050)
+++++
T Consensus 228 ~~~~~ 232 (241)
T cd03256 228 PPAEL 232 (241)
T ss_pred CHHHh
Confidence 88775
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=374.95 Aligned_cols=93 Identities=14% Similarity=0.229 Sum_probs=84.5
Q ss_pred hcCCCCCChhHHHHHHHHHHHccCC--CEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhhcCEEEEE
Q 001580 797 SEAGENFSVGQRQLLSLSRALLRRS--KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLL 873 (1050)
Q Consensus 797 ~~~~~~LSgGq~qrl~lArall~~p--~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~vl 873 (1050)
+....+|||||-||+-||+.|-.+= =+++|||||.||-+.-...+.+.|+++. .|+|||+|-||.++++.||+|+-|
T Consensus 1382 ~R~~~TLSGGE~QRirLa~~lgs~L~gvlYVLDEPSiGLHp~D~~~Li~~L~~Lrd~GNTvivVEHd~~~i~~AD~iidi 1461 (1809)
T PRK00635 1382 GQEQDTLSDGEHYRLHLAKKISSNLTDIIYLLEDPLSGLHPQDAPTLLQLIKELVTNNNTVIATDRSGSLAEHADHLIHL 1461 (1809)
T ss_pred cCCCCCCcchHHHHHHHHHHhcCCCceeEEEeCCCCcCCChhHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEe
Confidence 4567789999999999999998763 4789999999999999999999999987 489999999999999999999999
Q ss_pred ------eCCEEEEecChhHHhh
Q 001580 874 ------DSGRVLEYDTPEELLS 889 (1050)
Q Consensus 874 ------~~G~i~~~g~~~el~~ 889 (1050)
..|+|+++|+++++..
T Consensus 1462 GPgAG~~GG~iv~~G~~~~l~~ 1483 (1809)
T PRK00635 1462 GPGSGPQGGYLLSTSALKQSQP 1483 (1809)
T ss_pred CCCccCCCCEEEecCCHHHHhh
Confidence 4699999999999975
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=328.55 Aligned_cols=200 Identities=24% Similarity=0.390 Sum_probs=163.4
Q ss_pred EEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE-------------EeCcE
Q 001580 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGTV 108 (1050)
Q Consensus 42 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~i 108 (1050)
|+++|+++.|+. +++|+|+||++++|++++|+|+||||||||+++|+|.++|++|.+.. .+..+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 478999999963 46999999999999999999999999999999999999999886532 12359
Q ss_pred EEEecCCCCCc-ccHHHHhccCCC---CCHH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHH
Q 001580 109 AYVPQVSWIFN-ATVRDNILFGSA---FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 180 (1050)
Q Consensus 109 ~~v~Q~~~l~~-~TV~eni~~g~~---~~~~----~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAr 180 (1050)
+|++|++.++. .||+||+.++.. .... +....++..++.+ .......+|||||||||+|||
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~ 146 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITH-----------LRKSKASSLSGGERRRVEIAR 146 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHHHHHHHHHH
Confidence 99999998874 699999986521 1111 1222233333322 233445789999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhhhc
Q 001580 181 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 255 (1050)
Q Consensus 181 aL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 255 (1050)
||+.+|++|||||||++||+.+++.+++.+.+...+|+|+|++||+++++.. ||++++|++|++++.|+.+++..
T Consensus 147 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 147 ALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 9999999999999999999999999999887665568999999999988765 79999999999999998887654
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=347.77 Aligned_cols=190 Identities=24% Similarity=0.381 Sum_probs=160.2
Q ss_pred CCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE------------E----eCcEEEEecCCCCC-
Q 001580 56 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------I----RGTVAYVPQVSWIF- 118 (1050)
Q Consensus 56 ~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~----~~~i~~v~Q~~~l~- 118 (1050)
.+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+.. . +..||||+|++++|
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 457999999999999999999999999999999999999999886542 1 34699999999998
Q ss_pred cccHHHHhccCCCC---CH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEE
Q 001580 119 NATVRDNILFGSAF---EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIF 191 (1050)
Q Consensus 119 ~~TV~eni~~g~~~---~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vllL 191 (1050)
..||+|||.|+... .. ++..+.++..++....+ ....+|||||||||+|||||+.+|+|+||
T Consensus 85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~-----------~~p~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 85 HMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEH-----------RYPDELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhh-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 57999999986321 11 22334455555544333 34468999999999999999999999999
Q ss_pred eCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhhhcC
Q 001580 192 DDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 256 (1050)
Q Consensus 192 DEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 256 (1050)
||||++|||.+++++.+.+.+... .|+|+|+||||++++.. ||+|++|++|++++.|+++++..+
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 999999999999999998887644 48999999999998755 899999999999999999998765
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=319.52 Aligned_cols=190 Identities=24% Similarity=0.403 Sum_probs=160.4
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE------------EeCc
Q 001580 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 107 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 107 (1050)
..++++|++++|+.. .+++|+++||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 458999999999742 247999999999999999999999999999999999999999886543 1345
Q ss_pred EEEEecCCCCCcccHHHHhccCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 001580 108 VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 187 (1050)
Q Consensus 108 i~~v~Q~~~l~~~TV~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~ 187 (1050)
|+||+|+|.+++.||+||+.+......++....++ ++.....|||||+||++|||||+.+|+
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~p~ 145 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKRPR 145 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999988889999997654333222222111 234567899999999999999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhhcCEEEEEcCCeEeeccC
Q 001580 188 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 249 (1050)
Q Consensus 188 vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~~d~i~~l~~G~i~~~g~ 249 (1050)
++||||||++||+.++..+++.+.+.. +|+|+|++||+.+++..+|++++|++|++.+.|+
T Consensus 146 llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 146 VLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 999999999999999999999887653 5899999999999988899999999999987765
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=323.98 Aligned_cols=193 Identities=31% Similarity=0.461 Sum_probs=158.7
Q ss_pred EEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE----------EeCcEEEE
Q 001580 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 111 (1050)
Q Consensus 42 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v 111 (1050)
|+++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..++|+
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~ 77 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMV 77 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEE
Confidence 478999999963 47999999999999999999999999999999999999998876532 12359999
Q ss_pred ecCCCCC-cccHHHHhccCCC---CCHH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHc
Q 001580 112 PQVSWIF-NATVRDNILFGSA---FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 183 (1050)
Q Consensus 112 ~Q~~~l~-~~TV~eni~~g~~---~~~~----~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~ 183 (1050)
+|++.++ ..||+||+.++.. .... ++...++..++....+ ....+||||||||++|||||+
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qr~~laral~ 146 (213)
T cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLD-----------RKPKQLSGGQRQRVALGRAIV 146 (213)
T ss_pred ecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHh-----------CChhhCCHHHHHHHHHHHHHh
Confidence 9999887 6799999987521 1221 2233344444443333 334689999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhh-cCEEEEEcCCeEeecc
Q 001580 184 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEG 248 (1050)
Q Consensus 184 ~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g 248 (1050)
.+|+++||||||++||+.+++++++.+.+... .|+|+|++||+++++.. +|++++|++|++++.|
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 147 REPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999998877654 48999999999999876 7999999999988754
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=325.02 Aligned_cols=204 Identities=26% Similarity=0.430 Sum_probs=169.8
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeEE------------eCc
Q 001580 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------RGT 107 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~------------~~~ 107 (1050)
+.++++|+++.|+....+++|+++||+|++|++++|+|+||||||||+++|+|+++|++|.+... +..
T Consensus 10 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 89 (226)
T cd03248 10 GIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSK 89 (226)
T ss_pred ceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhh
Confidence 46999999999974333579999999999999999999999999999999999999998865321 235
Q ss_pred EEEEecCCCCCcccHHHHhccCCCC-CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCC
Q 001580 108 VAYVPQVSWIFNATVRDNILFGSAF-EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 186 (1050)
Q Consensus 108 i~~v~Q~~~l~~~TV~eni~~g~~~-~~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~ 186 (1050)
++|++|++.++..||+||+.++... ....+....+...+.+.++.++.|..+.++....+|||||||||+|||||+.+|
T Consensus 90 i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p 169 (226)
T cd03248 90 VSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNP 169 (226)
T ss_pred EEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 9999999988888999999876432 222222233334556667777656566678888999999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhhcCEEEEEcCCeE
Q 001580 187 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMV 244 (1050)
Q Consensus 187 ~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~~d~i~~l~~G~i 244 (1050)
+++||||||++||+.+++++.+.+.+... ++|+|++||+++++..||+|++|++|++
T Consensus 170 ~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 170 QVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999998876543 6899999999999988999999999863
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=325.51 Aligned_cols=196 Identities=23% Similarity=0.386 Sum_probs=160.2
Q ss_pred EEEEeEEEEeCCCCC-CCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE-----------EeCcEE
Q 001580 42 ISIRNGYFSWDSKAE-RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVA 109 (1050)
Q Consensus 42 i~~~~~~f~~~~~~~-~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i~ 109 (1050)
|+++|++++|+.... +++|+++||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 789999999974211 26999999999999999999999999999999999999999886532 123599
Q ss_pred EEecCCCCCc-ccHHHHhccCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHH
Q 001580 110 YVPQVSWIFN-ATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 181 (1050)
Q Consensus 110 ~v~Q~~~l~~-~TV~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAra 181 (1050)
|++|++.++. .||+||+.+... ... .+..+.++..++.+.+ .....+||||||||++||||
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~lara 150 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELL-----------DRRVGGFSTGMRQKVAIARA 150 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-----------hhhhhhcCHHHHHHHHHHHH
Confidence 9999998875 699999975321 111 2233344555554333 33456899999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeecc
Q 001580 182 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEG 248 (1050)
Q Consensus 182 L~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g 248 (1050)
|+.+|+++||||||++||+.+++++++.+.+...+|+|+|++||+++++.. +|++++|++|++++.|
T Consensus 151 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 151 LVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999999887765568999999999999875 7999999999987643
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=331.10 Aligned_cols=206 Identities=24% Similarity=0.378 Sum_probs=166.2
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC-----CCCeeE-----------
Q 001580 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV-----SDASAV----------- 103 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~-----~g~~~~----------- 103 (1050)
+.|+++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|+|+++|+ +|.+..
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 6 AIIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred ceEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 46999999999963 46999999999999999999999999999999999999874 564321
Q ss_pred ---EeCcEEEEecCCCCCcccHHHHhccCCCC----CH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHH
Q 001580 104 ---IRGTVAYVPQVSWIFNATVRDNILFGSAF----EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 172 (1050)
Q Consensus 104 ---~~~~i~~v~Q~~~l~~~TV~eni~~g~~~----~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGq 172 (1050)
.+..|+|++|++.++..||+||+.++... .. ++....++.+++...+. ........+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgG~ 155 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK-------DKLNTNALSLSGGQ 155 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH-------HHHhCCcccCCHHH
Confidence 12359999999988889999999876321 11 12223334444322111 11234567899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChh
Q 001580 173 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFE 251 (1050)
Q Consensus 173 rqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 251 (1050)
||||+|||||+.+|++|||||||++||+.+++++++.+.+.. ++.|+|++||+++++.. +||+++|++|++++.|+++
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 234 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTD 234 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999877764 47899999999999865 7999999999999999988
Q ss_pred hhhcC
Q 001580 252 DLSNN 256 (1050)
Q Consensus 252 ~l~~~ 256 (1050)
++..+
T Consensus 235 ~~~~~ 239 (254)
T PRK14273 235 ELFFN 239 (254)
T ss_pred HHHhC
Confidence 87643
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=324.34 Aligned_cols=190 Identities=31% Similarity=0.530 Sum_probs=156.2
Q ss_pred EEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeEE-------eCcEEEEecCC
Q 001580 43 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------RGTVAYVPQVS 115 (1050)
Q Consensus 43 ~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~-------~~~i~~v~Q~~ 115 (1050)
+++|++++|+. +++|+++||++++|++++|+|+||||||||+++|+|+++|++|.+..- +..++|++|++
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~ 77 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRR 77 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecccc
Confidence 36899999963 469999999999999999999999999999999999999998876432 23599999998
Q ss_pred CC---CcccHHHHhccCCCC--------C---HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHH
Q 001580 116 WI---FNATVRDNILFGSAF--------E---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 181 (1050)
Q Consensus 116 ~l---~~~TV~eni~~g~~~--------~---~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAra 181 (1050)
.+ +..||+||+.++... . .++....++..++....+. ...+|||||||||+||||
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la~a 146 (213)
T cd03235 78 SIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADR-----------QIGELSGGQQQRVLLARA 146 (213)
T ss_pred ccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhC-----------CcccCCHHHHHHHHHHHH
Confidence 75 457999999875321 1 1233445555565543332 346899999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeec
Q 001580 182 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEE 247 (1050)
Q Consensus 182 L~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~ 247 (1050)
|+.+|++|||||||++||+.+++++.+.+.+...+|+|+|++||+++++.. ||++++|++| +++.
T Consensus 147 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~ 212 (213)
T cd03235 147 LVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVAS 212 (213)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-Eeec
Confidence 999999999999999999999999999887765578999999999999876 7999999986 4443
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=325.76 Aligned_cols=200 Identities=29% Similarity=0.497 Sum_probs=161.7
Q ss_pred EEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE-------------EeCcE
Q 001580 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGTV 108 (1050)
Q Consensus 42 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~i 108 (1050)
|+++|++++|+. +++|+++||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 478999999963 47999999999999999999999999999999999999999886532 12359
Q ss_pred EEEecCCCCCc-ccHHHHhccCCCCC--HH---HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHH
Q 001580 109 AYVPQVSWIFN-ATVRDNILFGSAFE--PA---RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 182 (1050)
Q Consensus 109 ~~v~Q~~~l~~-~TV~eni~~g~~~~--~~---~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL 182 (1050)
+|++|++.++. .|++||+.++.... .+ +....++.. ..++ ........+||||||||++|||||
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~------~~l~----~~~~~~~~~LS~G~~qrv~laral 147 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELF------PRLK----ERRKQLAGTLSGGEQQMLAIARAL 147 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHH------Hhhh----hhhhCchhhCCHHHHHHHHHHHHH
Confidence 99999998875 69999998763221 11 111122221 1111 123345578999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhhh
Q 001580 183 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLS 254 (1050)
Q Consensus 183 ~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 254 (1050)
+.+|+++||||||++||+.++..+++.+.+...+|+|+|++||+++++.. ||++++|++|++++.|+.+++.
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 148 MSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 99999999999999999999999999887665568999999999998765 7999999999999988877654
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=326.07 Aligned_cols=196 Identities=24% Similarity=0.363 Sum_probs=161.0
Q ss_pred CcEEEEeEEEEeCCCCC-CCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE----E----------
Q 001580 40 PAISIRNGYFSWDSKAE-RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----I---------- 104 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~~-~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----~---------- 104 (1050)
+.|+++|++++|+.... +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. +
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 46999999999974222 35999999999999999999999999999999999999999886532 1
Q ss_pred --eCcEEEEecCCCCC-cccHHHHhccCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHH
Q 001580 105 --RGTVAYVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 174 (1050)
Q Consensus 105 --~~~i~~v~Q~~~l~-~~TV~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrq 174 (1050)
+..++|++|++.++ ..||.||+.++.. .. .++....++..++.+.++.. ..+|||||||
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~Ge~q 153 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHL-----------PAQLSGGEQQ 153 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-----------hhhCCHHHHH
Confidence 13599999999887 4699999976421 11 12334445555655444332 3589999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhhcCEEEEEcCCeEee
Q 001580 175 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKE 246 (1050)
Q Consensus 175 Rv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~~d~i~~l~~G~i~~ 246 (1050)
|++|||||+.+|+++||||||++||+.+.+++++.+.+... .|.|+|++||+++++..+|++++|++|++++
T Consensus 154 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 154 RVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQE 226 (228)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999998877644 4889999999999988899999999999864
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=325.28 Aligned_cols=193 Identities=23% Similarity=0.396 Sum_probs=157.4
Q ss_pred EEEEeEEEEeCCCC-CCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeEE----------------
Q 001580 42 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI---------------- 104 (1050)
Q Consensus 42 i~~~~~~f~~~~~~-~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~---------------- 104 (1050)
|+++|++++|+... .+++|+++||++++|++++|+||||||||||+++|+|+++|++|.+..-
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996322 2479999999999999999999999999999999999999998865321
Q ss_pred eCcEEEEecCCCCC-cccHHHHhccCC---CCCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHH
Q 001580 105 RGTVAYVPQVSWIF-NATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 176 (1050)
Q Consensus 105 ~~~i~~v~Q~~~l~-~~TV~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv 176 (1050)
+..++|++|++.++ ..||+||+.++. ..+. ++..+.++..++.+.. .....+|||||||||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRI-----------NHRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHHHH
Confidence 13599999999887 579999998642 1221 1222334444443322 233468999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhhcCEEEEEcCCeEe
Q 001580 177 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVK 245 (1050)
Q Consensus 177 ~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~~d~i~~l~~G~i~ 245 (1050)
+|||||+.+|++|||||||++||+.+++.+.+.+.+... .|+|+|++|||++++..+|++++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 999999999999999999999999999999998876544 489999999999999889999999999875
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=345.81 Aligned_cols=216 Identities=26% Similarity=0.393 Sum_probs=178.2
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhh-he
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK-IL 743 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~-~i 743 (1050)
.++++|++|+|++- ++|+||||++.+||+.|++|.||||||||+|+|+|.|+|++|+|.++|+++.-.++.+.++ .|
T Consensus 8 ll~~~~i~K~FggV--~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI 85 (500)
T COG1129 8 LLELRGISKSFGGV--KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85 (500)
T ss_pred eeeeecceEEcCCc--eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCc
Confidence 48999999999764 7999999999999999999999999999999999999999999999999999888877655 59
Q ss_pred EEEcCCcccccc-cHHHhcccCCCCCH--HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccC
Q 001580 744 GIIPQSPVLFSG-TVRFNLDPFSEHSD--ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 820 (1050)
Q Consensus 744 ~~v~Q~~~lf~~-tv~~nl~~~~~~~~--~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~ 820 (1050)
+.|+|+..|+.. ||.|||.++.+... .-+.+..-.....+.+.++....+ ......+||+||||.|+||||+..+
T Consensus 86 ~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~--~~~~v~~LsiaqrQ~VeIArAl~~~ 163 (500)
T COG1129 86 ATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID--PDTLVGDLSIAQRQMVEIARALSFD 163 (500)
T ss_pred EEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC--hhhhhhhCCHHHHHHHHHHHHHhcC
Confidence 999999999866 99999965543221 001111111122334444322211 3344457999999999999999999
Q ss_pred CCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecCh
Q 001580 821 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 884 (1050)
Q Consensus 821 p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~ 884 (1050)
++||||||||++|+....+.+.+.++++. +|.++|+|||+|+++.. ||||.||.||+.+..+..
T Consensus 164 arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 164 ARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeeccc
Confidence 99999999999999999999999999876 58999999999999977 999999999999987763
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=328.30 Aligned_cols=201 Identities=21% Similarity=0.379 Sum_probs=164.8
Q ss_pred cEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE----E-------eCcEE
Q 001580 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----I-------RGTVA 109 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----~-------~~~i~ 109 (1050)
.++++|++++|+ ++++|+++||+|++|++++|+|+||||||||+++|+|.++|++|.+.. + ...++
T Consensus 1 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~ 77 (236)
T TIGR03864 1 ALEVAGLSFAYG---ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLG 77 (236)
T ss_pred CEEEEeeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEE
Confidence 378999999996 357999999999999999999999999999999999999999886532 1 12599
Q ss_pred EEecCCCC-CcccHHHHhccCCC---CCHH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHH
Q 001580 110 YVPQVSWI-FNATVRDNILFGSA---FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 181 (1050)
Q Consensus 110 ~v~Q~~~l-~~~TV~eni~~g~~---~~~~----~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAra 181 (1050)
|++|++.+ +..|++||+.++.. .... +....++..++.. ..+....+||||||||++||||
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~qrl~lara 146 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAE-----------RADDKVRELNGGHRRRVEIARA 146 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhcCChhhCCHHHHHHHHHHHH
Confidence 99999987 47899999976421 1111 1122233333322 2344557899999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhhcCEEEEEcCCeEeeccChhhhhc
Q 001580 182 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSN 255 (1050)
Q Consensus 182 L~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 255 (1050)
|+.+|+++||||||++||+.+++++++.+.+... +|+|+|++||+++++..||++++|++|++++.|+++++..
T Consensus 147 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 147 LLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHH
Confidence 9999999999999999999999999998877653 5899999999999998899999999999999998877654
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=334.18 Aligned_cols=207 Identities=28% Similarity=0.418 Sum_probs=172.4
Q ss_pred cEEEEeEEEEeCCCC---CCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE-------------E
Q 001580 41 AISIRNGYFSWDSKA---ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------I 104 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~---~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~ 104 (1050)
+++++|++|+|+... .+++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+.. .
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 589999999997421 357999999999999999999999999999999999999999885432 1
Q ss_pred eCcEEEEecCCC--CCcccHHHHhccCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHH
Q 001580 105 RGTVAYVPQVSW--IFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 175 (1050)
Q Consensus 105 ~~~i~~v~Q~~~--l~~~TV~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqR 175 (1050)
+..+||+||+|. ++..||.+|+.|+.. ... .++..+++.+++...++.. ..+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHA-----------PHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHH
Confidence 235999999985 566799999988632 121 2344456666666554433 35899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhhcCEEEEEcCCeEeeccChhhhh
Q 001580 176 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLS 254 (1050)
Q Consensus 176 v~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 254 (1050)
|+|||||+.+|+++||||||++||+.++..+.+.+.+..+ .|.|+|++||+++++..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999999998876644 489999999999998889999999999999999998887
Q ss_pred cChH
Q 001580 255 NNGE 258 (1050)
Q Consensus 255 ~~~~ 258 (1050)
....
T Consensus 233 ~~~~ 236 (280)
T PRK13633 233 KEVE 236 (280)
T ss_pred cChH
Confidence 6543
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=333.64 Aligned_cols=206 Identities=24% Similarity=0.377 Sum_probs=169.7
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCC---CCeeE------------E
Q 001580 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS---DASAV------------I 104 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~---g~~~~------------~ 104 (1050)
..|+++|++|.|+.. .+++|+++||+|++|++++|+|+||||||||+++|+|+++|++ |.+.. .
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 358999999999632 3579999999999999999999999999999999999999987 43321 1
Q ss_pred eCcEEEEecCCC--CCcccHHHHhccCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHH
Q 001580 105 RGTVAYVPQVSW--IFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 175 (1050)
Q Consensus 105 ~~~i~~v~Q~~~--l~~~TV~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqR 175 (1050)
+..||||+|+|. ++..||+||+.++.. ... +++...++.+++....+.. ..+||||||||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LS~G~~qr 151 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSE-----------PANLSGGQKQR 151 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCC-----------cccCCHHHHHH
Confidence 235999999984 458899999987621 122 2234455566665444333 36899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhhcCEEEEEcCCeEeeccChhhhh
Q 001580 176 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLS 254 (1050)
Q Consensus 176 v~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 254 (1050)
|+|||||+.+|+++||||||++||+.+++.+.+.+.+... .|+|+|++||+++++..||++++|++|++++.|+++++.
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999998876654 489999999999999879999999999999999998876
Q ss_pred cCh
Q 001580 255 NNG 257 (1050)
Q Consensus 255 ~~~ 257 (1050)
...
T Consensus 232 ~~~ 234 (282)
T PRK13640 232 SKV 234 (282)
T ss_pred cCH
Confidence 543
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-36 Score=367.43 Aligned_cols=232 Identities=22% Similarity=0.310 Sum_probs=192.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcccC-----CC-C-------------------CCCCCCCcEEEEeEEEEeCCCCCC
Q 001580 3 VVAWQVVNANVSLKRMEEFLLAEEKILL-----PN-P-------------------PLTSGLPAISIRNGYFSWDSKAER 57 (1050)
Q Consensus 3 ~~i~~~~~a~~s~~Ri~~fl~~~e~~~~-----~~-~-------------------~~~~~~~~i~~~~~~f~~~~~~~~ 57 (1050)
..+..+.++.++.+||.++++.++.... +. + ........|+++|++|+|+. ++
T Consensus 388 ~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~--~~ 465 (659)
T TIGR00954 388 LAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN--GD 465 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC--CC
Confidence 4577888999999999999986542210 00 0 00112235999999999973 34
Q ss_pred CceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeEE-eCcEEEEecCCCCCcccHHHHhccCCC-----
Q 001580 58 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-RGTVAYVPQVSWIFNATVRDNILFGSA----- 131 (1050)
Q Consensus 58 ~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~-~~~i~~v~Q~~~l~~~TV~eni~~g~~----- 131 (1050)
++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+..- +..++||||+|.++++||+||+.++..
T Consensus 466 ~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~ 545 (659)
T TIGR00954 466 VLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMK 545 (659)
T ss_pred eeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhh
Confidence 79999999999999999999999999999999999999988765432 446999999999998899999998731
Q ss_pred ---CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 001580 132 ---FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 208 (1050)
Q Consensus 132 ---~~~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~ 208 (1050)
...++...+++.+++.+.++. +.|++|..+ .+.+||||||||++|||||+++|+++||||||++||+.+++++.+
T Consensus 546 ~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~ 623 (659)
T TIGR00954 546 RRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYR 623 (659)
T ss_pred ccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 234566778888999887777 778888765 567999999999999999999999999999999999999999998
Q ss_pred HHHccccCCcEEEEeccCcchhhhcCEEEEEcC
Q 001580 209 RCIRGELSGKTRVLVTNQLHFLSQVDRIILVHE 241 (1050)
Q Consensus 209 ~l~~~~~~g~t~ilvtH~~~~l~~~d~i~~l~~ 241 (1050)
.+.+ .|+|+|+|||+++.+..||++++|+.
T Consensus 624 ~l~~---~~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 624 LCRE---FGITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHH---cCCEEEEEeCchHHHHhCCEEEEEeC
Confidence 7754 37999999999999999999999963
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=335.46 Aligned_cols=200 Identities=27% Similarity=0.391 Sum_probs=163.6
Q ss_pred EEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE----------------EeC
Q 001580 43 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------IRG 106 (1050)
Q Consensus 43 ~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------------~~~ 106 (1050)
.++|+++.|+ ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+.
T Consensus 26 ~~~~~~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTG---QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcC---CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 4567777775 356899999999999999999999999999999999999998876432 023
Q ss_pred cEEEEecCCCCC-cccHHHHhccCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHH
Q 001580 107 TVAYVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 178 (1050)
Q Consensus 107 ~i~~v~Q~~~l~-~~TV~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~L 178 (1050)
.++|++|++.++ ..||+||+.++.. ... +++...++..++.+.++.. ..+|||||||||+|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKY-----------PDELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-----------cccCCHHHHHHHHH
Confidence 599999999887 6799999987421 111 2234445555655444433 35899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhhhcC
Q 001580 179 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 256 (1050)
Q Consensus 179 AraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 256 (1050)
||||+.+|++|||||||++||+.+++.+++.+.+... .|+|+|++||+++++.. ||++++|++|++++.|+++++.+.
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999998876543 48999999999999865 799999999999999998887643
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=333.10 Aligned_cols=207 Identities=23% Similarity=0.344 Sum_probs=171.1
Q ss_pred cEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE------------EeCcE
Q 001580 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 108 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 108 (1050)
.|+++|++|+|+....+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.+.. .+..+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 589999999997433346999999999999999999999999999999999999999886532 12359
Q ss_pred EEEecCCC--CCcccHHHHhccCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHH
Q 001580 109 AYVPQVSW--IFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 179 (1050)
Q Consensus 109 ~~v~Q~~~--l~~~TV~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LA 179 (1050)
||++|+|. ++..||.||+.++.. ... +++..+++.+++....+. ...+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTR-----------EPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHHHHHH
Confidence 99999984 567899999987521 122 123344555555443332 3468999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccC-CcEEEEeccCcchhhhcCEEEEEcCCeEeeccChhhhhcChH
Q 001580 180 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGE 258 (1050)
Q Consensus 180 raL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~-g~t~ilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 258 (1050)
|||+.+|+++||||||++||+.+++.+.+.+.+...+ |.|+|++||+++++..||+|++|++|++++.|+++++....+
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 232 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSE 232 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHH
Confidence 9999999999999999999999999999988766544 899999999999998899999999999999999988776543
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-37 Score=290.72 Aligned_cols=212 Identities=28% Similarity=0.414 Sum_probs=183.0
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCe--ecCCCC----hHH
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF--DIAKFG----LMD 738 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~--~i~~~~----~~~ 738 (1050)
.|++++++|.|+.. .+|.||+|+-+.||.+.++||||||||||++.|.=+--|.+|+..|.|. |.++.+ ...
T Consensus 2 sirv~~in~~yg~~--q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~ 79 (242)
T COG4161 2 SIQLNGINCFYGAH--QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRD 79 (242)
T ss_pred ceEEcccccccccc--hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHH
Confidence 38899999999765 6999999999999999999999999999999999999999999999875 333333 346
Q ss_pred HhhheEEEcCCcccccc-cHHHhcccCC--------CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001580 739 LRKILGIIPQSPVLFSG-TVRFNLDPFS--------EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 809 (1050)
Q Consensus 739 ~r~~i~~v~Q~~~lf~~-tv~~nl~~~~--------~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~q 809 (1050)
+|+.+|+|+|...|+.. ||-+||.-.. +....+..+.+++..+.++.+++|. .|||||+|
T Consensus 80 lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~pl-----------hlsggqqq 148 (242)
T COG4161 80 LRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPL-----------HLSGGQQQ 148 (242)
T ss_pred HHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCce-----------ecccchhh
Confidence 89999999999999976 9999984211 1123345566777777777777774 69999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC-CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 001580 810 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 887 (1050)
Q Consensus 810 rl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 887 (1050)
|++|||||+.+|++|++||||++|||+-...+.+.|+++.. |.|-++|||..+..+. |.+|+.|++|+|+|.|+++-+
T Consensus 149 rvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~f 228 (242)
T COG4161 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred hHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhc
Confidence 99999999999999999999999999999999999999764 7899999999999987 999999999999999998877
Q ss_pred hh
Q 001580 888 LS 889 (1050)
Q Consensus 888 ~~ 889 (1050)
-.
T Consensus 229 t~ 230 (242)
T COG4161 229 TE 230 (242)
T ss_pred cC
Confidence 54
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=330.52 Aligned_cols=206 Identities=23% Similarity=0.370 Sum_probs=165.9
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCCCeeE-----------
Q 001580 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-----PVSDASAV----------- 103 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~-----~~~g~~~~----------- 103 (1050)
+.|+++|++|+|+. +++|+++||++++|++++|+|+||||||||+++|+|+.+ |++|.+..
T Consensus 5 ~~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (253)
T PRK14242 5 PKMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81 (253)
T ss_pred cEEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccC
Confidence 56999999999963 469999999999999999999999999999999999864 46665421
Q ss_pred ---EeCcEEEEecCCCCCcccHHHHhccCCC---C-CH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHH
Q 001580 104 ---IRGTVAYVPQVSWIFNATVRDNILFGSA---F-EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 172 (1050)
Q Consensus 104 ---~~~~i~~v~Q~~~l~~~TV~eni~~g~~---~-~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGq 172 (1050)
.+..++|++|++.++..||+||+.++.. . .. ++....++.+++.+.+. +..+....+|||||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq 154 (253)
T PRK14242 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGGQ 154 (253)
T ss_pred HHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHH
Confidence 1235999999998887899999987521 1 11 12233344444432111 12345567899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChh
Q 001580 173 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFE 251 (1050)
Q Consensus 173 rqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 251 (1050)
||||+|||||+.+|++|||||||++||+.++.++++.+.+.. +++|+|++||+++++.. ||++++|++|++++.|+++
T Consensus 155 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 233 (253)
T PRK14242 155 QQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-ARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTE 233 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999887663 47899999999999865 7999999999999999988
Q ss_pred hhhcC
Q 001580 252 DLSNN 256 (1050)
Q Consensus 252 ~l~~~ 256 (1050)
++.+.
T Consensus 234 ~~~~~ 238 (253)
T PRK14242 234 QIFTR 238 (253)
T ss_pred HHHcC
Confidence 77543
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=332.18 Aligned_cols=201 Identities=30% Similarity=0.445 Sum_probs=165.1
Q ss_pred cEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE-----------------
Q 001580 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------- 103 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------------- 103 (1050)
.++++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 5899999999963 47999999999999999999999999999999999999998876421
Q ss_pred ---EeCcEEEEecCCCCC-cccHHHHhccCC----CCCHH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHH
Q 001580 104 ---IRGTVAYVPQVSWIF-NATVRDNILFGS----AFEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 171 (1050)
Q Consensus 104 ---~~~~i~~v~Q~~~l~-~~TV~eni~~g~----~~~~~----~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGG 171 (1050)
.+..++|++|++.++ ..||+||+.++. ..... +....++..++... ......+||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G 148 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGK-----------ETSYPRRLSGG 148 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcch-----------hhCChhhCChH
Confidence 123599999999887 579999997642 11111 12222333333221 23455789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccCh
Q 001580 172 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTF 250 (1050)
Q Consensus 172 qrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 250 (1050)
|||||+|||||+.+|++|||||||++||+.+++++++.+.+...+|+|+|++||+++++.. ||++++|++|++++.|+.
T Consensus 149 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 228 (250)
T PRK11264 149 QQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPA 228 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999877665568999999999999876 799999999999999998
Q ss_pred hhhhc
Q 001580 251 EDLSN 255 (1050)
Q Consensus 251 ~~l~~ 255 (1050)
+++..
T Consensus 229 ~~~~~ 233 (250)
T PRK11264 229 KALFA 233 (250)
T ss_pred HHHhc
Confidence 88754
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=329.21 Aligned_cols=207 Identities=22% Similarity=0.288 Sum_probs=168.8
Q ss_pred cEEEEEEEEEeCCC------------------CCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEE
Q 001580 665 SIKFEDVVLRYRPE------------------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 726 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~------------------~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~ 726 (1050)
.|+++||++.|... ..++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 47888888877431 135899999999999999999999999999999999999999999999
Q ss_pred CCeecCCCChHHHhhheEEEcCCccccc-ccHHHhcccC---CCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCC
Q 001580 727 DGFDIAKFGLMDLRKILGIIPQSPVLFS-GTVRFNLDPF---SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 802 (1050)
Q Consensus 727 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~~nl~~~---~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~ 802 (1050)
+|. +++++|++.++. .|+++|+.+. .....++..+.. .+.++. .+++..+......
T Consensus 84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~l~~--~~l~~~~~~~~~~ 143 (264)
T PRK13546 84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMT-----PKIIEF--SELGEFIYQPVKK 143 (264)
T ss_pred CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHH--cCCchhhcCCccc
Confidence 984 456778876664 4999998642 112233322211 122222 2455556666788
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEE
Q 001580 803 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 880 (1050)
Q Consensus 803 LSgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~ 880 (1050)
||||||||++||||++.+|+||||||||++||+.+.+.+.+.|.++. .++|+|++||+++.+.. ||+|++|++|++++
T Consensus 144 LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~ 223 (264)
T PRK13546 144 YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKD 223 (264)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998864 47899999999999877 99999999999999
Q ss_pred ecChhHHhhcC
Q 001580 881 YDTPEELLSNE 891 (1050)
Q Consensus 881 ~g~~~el~~~~ 891 (1050)
.|++++++...
T Consensus 224 ~g~~~~~~~~~ 234 (264)
T PRK13546 224 YGELDDVLPKY 234 (264)
T ss_pred eCCHHHHHHHh
Confidence 99999998754
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=323.92 Aligned_cols=189 Identities=25% Similarity=0.442 Sum_probs=156.3
Q ss_pred EEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE---------------EeC
Q 001580 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IRG 106 (1050)
Q Consensus 42 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------~~~ 106 (1050)
|+++|++++|+. ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+.
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 789999999952 357999999999999999999999999999999999999999886532 123
Q ss_pred cEEEEecCCCCC-cccHHHHhccCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHH
Q 001580 107 TVAYVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 178 (1050)
Q Consensus 107 ~i~~v~Q~~~l~-~~TV~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~L 178 (1050)
.++|++|++.++ ..||.||+.++.. ... +++...++..++....+. ...+|||||||||+|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADA-----------FPEQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHHHH
Confidence 599999999887 5799999987521 111 233344555555443332 235899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCe
Q 001580 179 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGM 243 (1050)
Q Consensus 179 AraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~ 243 (1050)
||||+.+|+++||||||++||+.++.++.+.+.....+|+|+|++||+++++.. ||++++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999887765568999999999999886 79999999884
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=366.00 Aligned_cols=215 Identities=27% Similarity=0.434 Sum_probs=172.4
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccc--cCCccEEEEC----------------
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV--ELERGRILID---------------- 727 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~--~p~~G~i~~~---------------- 727 (1050)
|+++|++++|++ .++|+|+||+|.+||++||+||||||||||+++|+|++ +|++|+|.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~ 78 (520)
T TIGR03269 1 IEVKNLTKKFDG--KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV 78 (520)
T ss_pred CEEEEEEEEECC--eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence 478999999964 36999999999999999999999999999999999996 7999999997
Q ss_pred -------CeecC-------CCC---hHHHhhheEEEcCC-cccccc-cHHHhcccCC---CCCHHHHHHHHHHhcHHHHH
Q 001580 728 -------GFDIA-------KFG---LMDLRKILGIIPQS-PVLFSG-TVRFNLDPFS---EHSDADLWEALERAHLKDAI 785 (1050)
Q Consensus 728 -------g~~i~-------~~~---~~~~r~~i~~v~Q~-~~lf~~-tv~~nl~~~~---~~~~~~~~~~l~~~~~~~~i 785 (1050)
|.++. ..+ ...+|+.++|+||+ +.+|.. |+++|+.+.. .....+.. ..+.+.+
T Consensus 79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l 153 (520)
T TIGR03269 79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAV-----GRAVDLI 153 (520)
T ss_pred ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHH
Confidence 33221 111 12357789999998 567764 9999986421 11111111 1123333
Q ss_pred HHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchh
Q 001580 786 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNT 863 (1050)
Q Consensus 786 ~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~ 863 (1050)
+.+ |++........+|||||||||+|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|||+||||++.
T Consensus 154 ~~~--gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~ 231 (520)
T TIGR03269 154 EMV--QLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV 231 (520)
T ss_pred HHc--CChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence 332 44444555667899999999999999999999999999999999999999999999864 37899999999999
Q ss_pred hhh-cCEEEEEeCCEEEEecChhHHhh
Q 001580 864 IID-CDRILLLDSGRVLEYDTPEELLS 889 (1050)
Q Consensus 864 ~~~-~d~i~vl~~G~i~~~g~~~el~~ 889 (1050)
+.. ||+|++|++|+++..|+++++..
T Consensus 232 ~~~~~d~i~~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 232 IEDLSDKAIWLENGEIKEEGTPDEVVA 258 (520)
T ss_pred HHHhcCEEEEEeCCEEeeecCHHHHHH
Confidence 976 99999999999999999998865
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=328.89 Aligned_cols=204 Identities=27% Similarity=0.412 Sum_probs=165.0
Q ss_pred cEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC-----CCCeeE------------
Q 001580 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV-----SDASAV------------ 103 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~-----~g~~~~------------ 103 (1050)
+|+++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|.+..
T Consensus 1 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~ 77 (247)
T TIGR00972 1 AIEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDV 77 (247)
T ss_pred CEEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccch
Confidence 3789999999963 46999999999999999999999999999999999999987 775432
Q ss_pred --EeCcEEEEecCCCCCcccHHHHhccCCCC----CH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHH
Q 001580 104 --IRGTVAYVPQVSWIFNATVRDNILFGSAF----EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 173 (1050)
Q Consensus 104 --~~~~i~~v~Q~~~l~~~TV~eni~~g~~~----~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqr 173 (1050)
.+..++|+||++.++..||+||+.++... .. ++....++..++...+. ........+||||||
T Consensus 78 ~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~ 150 (247)
T TIGR00972 78 VELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQ 150 (247)
T ss_pred HHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHH
Confidence 12359999999988779999999875211 11 12233344444431110 123345578999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhh
Q 001580 174 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 252 (1050)
Q Consensus 174 qRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 252 (1050)
|||+|||||+.+|+++||||||++||+.++..+++.+.+... ++|+|++||+++++.. ||++++|++|++++.|++++
T Consensus 151 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 229 (247)
T TIGR00972 151 QRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQ 229 (247)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999998776544 4899999999998865 79999999999999999887
Q ss_pred hhc
Q 001580 253 LSN 255 (1050)
Q Consensus 253 l~~ 255 (1050)
+..
T Consensus 230 ~~~ 232 (247)
T TIGR00972 230 IFT 232 (247)
T ss_pred HHh
Confidence 754
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=333.52 Aligned_cols=203 Identities=23% Similarity=0.348 Sum_probs=166.1
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE---------------E
Q 001580 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------I 104 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------~ 104 (1050)
+.|+++|++|.|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+.. .
T Consensus 6 ~~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (269)
T PRK11831 6 NLVDMRGVSFTRG---NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTV 82 (269)
T ss_pred ceEEEeCeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHH
Confidence 3699999999996 357999999999999999999999999999999999999998876432 1
Q ss_pred eCcEEEEecCCCCCc-ccHHHHhccCCC----CCHH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHH
Q 001580 105 RGTVAYVPQVSWIFN-ATVRDNILFGSA----FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 175 (1050)
Q Consensus 105 ~~~i~~v~Q~~~l~~-~TV~eni~~g~~----~~~~----~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqR 175 (1050)
+..++|++|++.++. .||.||+.++.. .+.. +....++..++.... .....+||||||||
T Consensus 83 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq~qr 151 (269)
T PRK11831 83 RKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAA-----------KLMPSELSGGMARR 151 (269)
T ss_pred hhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHHH
Confidence 235999999998874 699999976421 1211 122233444443222 23346899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhh
Q 001580 176 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 253 (1050)
Q Consensus 176 v~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 253 (1050)
|+|||||+.+|+++||||||++||+.+++.+.+.+.+... .|+|+|+||||++++.. ||++++|++|++++.|+++++
T Consensus 152 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 152 AALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999998876544 38999999999999876 799999999999999999887
Q ss_pred hcC
Q 001580 254 SNN 256 (1050)
Q Consensus 254 ~~~ 256 (1050)
.+.
T Consensus 232 ~~~ 234 (269)
T PRK11831 232 QAN 234 (269)
T ss_pred hcC
Confidence 654
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=324.76 Aligned_cols=201 Identities=24% Similarity=0.353 Sum_probs=159.9
Q ss_pred EEEEEEEEEeCC----C-CCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEEC--Ce--ecCCCCh
Q 001580 666 IKFEDVVLRYRP----E-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID--GF--DIAKFGL 736 (1050)
Q Consensus 666 i~~~~v~~~y~~----~-~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~--g~--~i~~~~~ 736 (1050)
++++|++++|+. + ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++ |. ++...+.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 789999999953 1 1369999999999999999999999999999999999999999999998 42 6655554
Q ss_pred HH---H-hhheEEEcCCcccccc-cHHHhcccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchh-hhcCCCCCChhH
Q 001580 737 MD---L-RKILGIIPQSPVLFSG-TVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQ-VSEAGENFSVGQ 807 (1050)
Q Consensus 737 ~~---~-r~~i~~v~Q~~~lf~~-tv~~nl~~~~---~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~-v~~~~~~LSgGq 807 (1050)
.. + ++.++|+||++.++.. |+++|+.+.. .....+.. ..+.++++.+ |+... ....+.+|||||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LS~G~ 154 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAAR-----ARARELLARL--NIPERLWHLPPATFSGGE 154 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CCchhhhhCCcccCCHHH
Confidence 43 2 4579999999988765 9999986421 11111111 1122334432 33322 244567899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEE
Q 001580 808 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLL 873 (1050)
Q Consensus 808 ~qrl~lArall~~p~illLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl 873 (1050)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+++.+
T Consensus 155 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 155 QQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999999864 47899999999999875 9999876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=327.11 Aligned_cols=201 Identities=29% Similarity=0.445 Sum_probs=165.4
Q ss_pred EEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE--------------EeCc
Q 001580 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IRGT 107 (1050)
Q Consensus 42 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------~~~~ 107 (1050)
++++|++++|+ ++++|+|+||++++|++++|+|+||||||||+++|+|.++|++|.+.. .+..
T Consensus 2 l~~~~l~~~~~---~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFG---PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEEC---CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 78999999996 257999999999999999999999999999999999999999886432 1235
Q ss_pred EEEEecCCCCC-cccHHHHhccCCC----CCHH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHH
Q 001580 108 VAYVPQVSWIF-NATVRDNILFGSA----FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 178 (1050)
Q Consensus 108 i~~v~Q~~~l~-~~TV~eni~~g~~----~~~~----~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~L 178 (1050)
++|++|++.++ ..||+||+.++.. .... ++.+.++..++...+ .....+|||||||||+|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~l 147 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERA-----------HHYPSELSGGQQQRVAI 147 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHH-----------hcChhhcCHHHHHHHHH
Confidence 99999999876 5799999987521 1111 122333333443322 33446899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhhhcC
Q 001580 179 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 256 (1050)
Q Consensus 179 AraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 256 (1050)
||||+.+|+++||||||++||+.++.++.+.+.+...+|+|+|++||+++++.. ||++++|++|++++.|+++++.+.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 999999999999999999999999999999877665568999999999999975 799999999999999998877543
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=321.39 Aligned_cols=192 Identities=23% Similarity=0.401 Sum_probs=157.7
Q ss_pred EEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeEE--------eCcEEEEec
Q 001580 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI--------RGTVAYVPQ 113 (1050)
Q Consensus 42 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~--------~~~i~~v~Q 113 (1050)
++++|+++.|+ ++++|+++||++++|++++|+|+||||||||+++|+|+++|++|.+..- +..++|++|
T Consensus 1 l~~~~l~~~~~---~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q 77 (210)
T cd03269 1 LEVENVTKRFG---RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPE 77 (210)
T ss_pred CEEEEEEEEEC---CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEecc
Confidence 47899999996 3569999999999999999999999999999999999999998765431 235999999
Q ss_pred CCCCC-cccHHHHhccCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccC
Q 001580 114 VSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 185 (1050)
Q Consensus 114 ~~~l~-~~TV~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~ 185 (1050)
++.++ ..||+||+.++.. ... ++..+.++..++.... .....+|||||||||+|||||+.+
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 78 ERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYA-----------NKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred CCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHH-----------hCcHhhCCHHHHHHHHHHHHHhcC
Confidence 99887 5799999976421 111 1223334444443322 234468999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeec
Q 001580 186 SDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEE 247 (1050)
Q Consensus 186 ~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~ 247 (1050)
|+++||||||++||+.+++++.+.+.+...+|+|+|++||+++++.. +|++++|++|++++.
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 209 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLY 209 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEec
Confidence 99999999999999999999999887665568999999999999865 799999999998764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=331.60 Aligned_cols=206 Identities=30% Similarity=0.442 Sum_probs=169.4
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE------------EeCc
Q 001580 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 107 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 107 (1050)
+.|+++|+++.|+. +++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. ++..
T Consensus 6 ~~l~~~nl~~~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 6 VMIKVENVSFSYPN-SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred eEEEEEeEEEEcCC-CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence 46999999999963 2457999999999999999999999999999999999999999876432 1345
Q ss_pred EEEEecCCC--CCcccHHHHhccCCC---CCHH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHH
Q 001580 108 VAYVPQVSW--IFNATVRDNILFGSA---FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 178 (1050)
Q Consensus 108 i~~v~Q~~~--l~~~TV~eni~~g~~---~~~~----~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~L 178 (1050)
++|++|+|. ++..||+||+.++.. .... +..+.++..++.+.++. ...+||||||||++|
T Consensus 85 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~l 153 (271)
T PRK13632 85 IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDK-----------EPQNLSGGQKQRVAI 153 (271)
T ss_pred eEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-----------CcccCCHHHHHHHHH
Confidence 999999984 457899999987521 2222 12334455555544433 346899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccC-CcEEEEeccCcchhhhcCEEEEEcCCeEeeccChhhhhcCh
Q 001580 179 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNG 257 (1050)
Q Consensus 179 AraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~-g~t~ilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 257 (1050)
||||+.+|++|||||||++||+.+++.+++.+.+...+ ++|+|++||+++++..||++++|++|++++.|+.+++....
T Consensus 154 aral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 233 (271)
T PRK13632 154 ASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNK 233 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcCH
Confidence 99999999999999999999999999999988776544 58999999999998878999999999999999888776543
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=339.89 Aligned_cols=208 Identities=22% Similarity=0.330 Sum_probs=168.9
Q ss_pred CCcEEEEeEEEEeCCCC----------CCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE-----
Q 001580 39 LPAISIRNGYFSWDSKA----------ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----- 103 (1050)
Q Consensus 39 ~~~i~~~~~~f~~~~~~----------~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----- 103 (1050)
.+.|+++|++++|+... ..++++|+||+|++||+++|+|+||||||||+++|+|+++|++|.+..
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 35699999999997421 246999999999999999999999999999999999999998876532
Q ss_pred ----------EeCcEEEEecCC--CCC-cccHHHHhccCC-----CCCHH----HHHHHHHHhCcHHHHhcCCCCCcccc
Q 001580 104 ----------IRGTVAYVPQVS--WIF-NATVRDNILFGS-----AFEPA----RYEKAIDVTSLQHDLDLLPGGDVTEI 161 (1050)
Q Consensus 104 ----------~~~~i~~v~Q~~--~l~-~~TV~eni~~g~-----~~~~~----~~~~~~~~~~l~~~~~~~~~g~~t~v 161 (1050)
.++.|+||+|+| .++ ..||.|||.++. ..... +....++..++... ..
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~----------~~ 155 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPN----------LI 155 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChH----------Hh
Confidence 134699999998 355 689999997531 12222 22233444444211 12
Q ss_pred cCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhh-cCEEEEE
Q 001580 162 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILV 239 (1050)
Q Consensus 162 g~~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~-~d~i~~l 239 (1050)
.....+|||||||||+|||||+.+|++||+||||++||+.++..+.+.+.+... .|.|+|+||||+.++.. ||+|++|
T Consensus 156 ~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl 235 (331)
T PRK15079 156 NRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVM 235 (331)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 344578999999999999999999999999999999999999999998877654 48999999999999976 7999999
Q ss_pred cCCeEeeccChhhhhcC
Q 001580 240 HEGMVKEEGTFEDLSNN 256 (1050)
Q Consensus 240 ~~G~i~~~g~~~~l~~~ 256 (1050)
.+|++++.|+.+++..+
T Consensus 236 ~~G~ive~g~~~~i~~~ 252 (331)
T PRK15079 236 YLGHAVELGTYDEVYHN 252 (331)
T ss_pred ECCEEEEEcCHHHHHcC
Confidence 99999999999998765
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=324.66 Aligned_cols=203 Identities=26% Similarity=0.405 Sum_probs=165.0
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE-------------EeC
Q 001580 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRG 106 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~ 106 (1050)
+.|+++|+++.|+. +++|+++||++++||+++|+|+||||||||+++|+|+++|++|.+.. .+.
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~ 80 (237)
T PRK11614 4 VMLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMRE 80 (237)
T ss_pred cEEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHh
Confidence 46999999999963 57999999999999999999999999999999999999999886432 123
Q ss_pred cEEEEecCCCCCc-ccHHHHhccCCCC-CHHHHH----HHHHHh-CcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHH
Q 001580 107 TVAYVPQVSWIFN-ATVRDNILFGSAF-EPARYE----KAIDVT-SLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 179 (1050)
Q Consensus 107 ~i~~v~Q~~~l~~-~TV~eni~~g~~~-~~~~~~----~~~~~~-~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LA 179 (1050)
.++|++|++.++. .||.||+.++... ...... ..++.. .+.. .......+||||||||++||
T Consensus 81 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~-----------~~~~~~~~LS~G~~qrl~la 149 (237)
T PRK11614 81 AVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHE-----------RRIQRAGTMSGGEQQMLAIG 149 (237)
T ss_pred CEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHH-----------HHhCchhhCCHHHHHHHHHH
Confidence 5999999998874 6999999875321 111111 111211 1111 12234568999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhhhcC
Q 001580 180 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 256 (1050)
Q Consensus 180 raL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 256 (1050)
|||+.+|+++||||||++||+.+++.+++.+.+...+|+|+|++||+++++.. ||++++|++|++++.|+++++...
T Consensus 150 ~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (237)
T PRK11614 150 RALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227 (237)
T ss_pred HHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcC
Confidence 99999999999999999999999999999887765568999999999998765 799999999999999999887644
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=331.23 Aligned_cols=205 Identities=28% Similarity=0.430 Sum_probs=169.1
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE------------EeCc
Q 001580 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 107 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 107 (1050)
..++++|++++|+. .+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.+.. .+..
T Consensus 2 ~~l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 79 (277)
T PRK13652 2 HLIETRDLCYSYSG--SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKF 79 (277)
T ss_pred ceEEEEEEEEEeCC--CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence 35889999999963 246999999999999999999999999999999999999999886532 1124
Q ss_pred EEEEecCCC--CCcccHHHHhccCCC---CCHH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHH
Q 001580 108 VAYVPQVSW--IFNATVRDNILFGSA---FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 178 (1050)
Q Consensus 108 i~~v~Q~~~--l~~~TV~eni~~g~~---~~~~----~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~L 178 (1050)
++||+|++. ++..||.||+.++.. .+.+ ++...++..++...++. ....||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qrl~l 148 (277)
T PRK13652 80 VGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDR-----------VPHHLSGGEKKRVAI 148 (277)
T ss_pred eEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcC-----------CcccCCHHHHHHHHH
Confidence 999999984 567899999986531 2222 23344555555544333 335899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccC-CcEEEEeccCcchhh-hcCEEEEEcCCeEeeccChhhhhcC
Q 001580 179 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 256 (1050)
Q Consensus 179 AraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~-g~t~ilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 256 (1050)
||||+.+|+++||||||++||+.+++.+++.+.+...+ |.|+|++||+++++. .|||+++|++|++++.|+++++.+.
T Consensus 149 araL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 149 AGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 99999999999999999999999999999988776544 899999999999986 5799999999999999999888755
Q ss_pred h
Q 001580 257 G 257 (1050)
Q Consensus 257 ~ 257 (1050)
.
T Consensus 229 ~ 229 (277)
T PRK13652 229 P 229 (277)
T ss_pred H
Confidence 3
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=322.81 Aligned_cols=199 Identities=27% Similarity=0.502 Sum_probs=163.0
Q ss_pred EEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE-----------EeCcEEE
Q 001580 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVAY 110 (1050)
Q Consensus 42 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i~~ 110 (1050)
|+++|+++.|+.. .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..++|
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEE
Confidence 4789999999632 257999999999999999999999999999999999999999886532 1235999
Q ss_pred EecCCCCC-cccHHHHhccCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHH
Q 001580 111 VPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 182 (1050)
Q Consensus 111 v~Q~~~l~-~~TV~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL 182 (1050)
++|++.++ ..||+||+.++.. ... +++...++..++.+..+ ....+|||||||||+|||||
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKAN-----------KRARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-----------ChhhhCCHHHHHHHHHHHHH
Confidence 99999887 6899999986421 111 22334445555543332 23468999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhh
Q 001580 183 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 253 (1050)
Q Consensus 183 ~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 253 (1050)
+.+|+++||||||++||+.+.+++.+.+.+... ++|+|++||+++++.. ||++++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 999999999999999999999999998776543 5899999999999875 799999999999998887654
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=325.38 Aligned_cols=201 Identities=21% Similarity=0.374 Sum_probs=164.7
Q ss_pred cEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE-------------EeCc
Q 001580 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 107 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~ 107 (1050)
.++++|++|.|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 5899999999963 57999999999999999999999999999999999999999886532 1245
Q ss_pred EEEEecCCCCC-cccHHHHhccCCCC----CHH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHH
Q 001580 108 VAYVPQVSWIF-NATVRDNILFGSAF----EPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 178 (1050)
Q Consensus 108 i~~v~Q~~~l~-~~TV~eni~~g~~~----~~~----~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~L 178 (1050)
++|++|++.++ ..||.||+.++... +.. +....++..++.. .......+|||||||||+|
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~l 148 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEH-----------LRDSMGQSLSGGERRRVEI 148 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHH-----------HhhcchhhCCHHHHHHHHH
Confidence 99999999877 47999999875321 111 1222223323221 2334557899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhhhc
Q 001580 179 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 255 (1050)
Q Consensus 179 AraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 255 (1050)
||||+.+|++|||||||++||+.+++++++.+.....+|+|+|++||+++++.. ||++++|++|++++.|+++++..
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 149 ARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 999999999999999999999999999998776655568999999999988765 79999999999999999887754
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=333.76 Aligned_cols=206 Identities=24% Similarity=0.424 Sum_probs=166.1
Q ss_pred cEEEEeEEEEeCCCC--CCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE---------------
Q 001580 41 AISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 103 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~--~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------- 103 (1050)
.|+++|++|+|+... .+++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 378999999997421 146999999999999999999999999999999999999999876532
Q ss_pred -EeCcEEEEecCC--CCCcccHHHHhccCCC---CCHHH----HHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHH
Q 001580 104 -IRGTVAYVPQVS--WIFNATVRDNILFGSA---FEPAR----YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 173 (1050)
Q Consensus 104 -~~~~i~~v~Q~~--~l~~~TV~eni~~g~~---~~~~~----~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqr 173 (1050)
.+..|+|++|++ .++..||+||+.++.. ..... ....++..++... .......+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~ 151 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISES----------LFEKNPFELSGGQM 151 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCHHHH
Confidence 123599999997 4677899999987521 12221 1222333333211 12344578999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhh
Q 001580 174 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 252 (1050)
Q Consensus 174 qRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 252 (1050)
|||+|||||+.+|++|||||||++||+.+++++++.+.+....|+|+|++||+++++.. ||++++|++|++++.|++++
T Consensus 152 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (280)
T PRK13649 152 RRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKD 231 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999887665568999999999999865 79999999999999999888
Q ss_pred hhcC
Q 001580 253 LSNN 256 (1050)
Q Consensus 253 l~~~ 256 (1050)
+...
T Consensus 232 ~~~~ 235 (280)
T PRK13649 232 IFQD 235 (280)
T ss_pred HhcC
Confidence 7654
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=331.61 Aligned_cols=202 Identities=24% Similarity=0.382 Sum_probs=165.2
Q ss_pred cEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE--------------EeC
Q 001580 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IRG 106 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------~~~ 106 (1050)
+|+++|++++|+ ++++|+++||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+.
T Consensus 1 ml~~~~l~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 77 (271)
T PRK13638 1 MLATSDLWFRYQ---DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQ 77 (271)
T ss_pred CeEEEEEEEEcC---CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHh
Confidence 378999999996 357999999999999999999999999999999999999999886532 123
Q ss_pred cEEEEecCCC--CCcccHHHHhccCC---CCCHH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHH
Q 001580 107 TVAYVPQVSW--IFNATVRDNILFGS---AFEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 177 (1050)
Q Consensus 107 ~i~~v~Q~~~--l~~~TV~eni~~g~---~~~~~----~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~ 177 (1050)
.|+|++|++. ++..|+.+|+.++. ..... +....++..++.... .....+||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrl~ 146 (271)
T PRK13638 78 QVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFR-----------HQPIQCLSHGQKKRVA 146 (271)
T ss_pred heEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHh-----------cCCchhCCHHHHHHHH
Confidence 5999999985 45678999998641 11221 122334444443322 2234689999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhhhcC
Q 001580 178 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 256 (1050)
Q Consensus 178 LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 256 (1050)
|||||+.+|+++||||||++||+.++.++++.+.+...+|.|+|++||+++++.. +|++++|++|++++.|+++++...
T Consensus 147 laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 147 IAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999887765568999999999999865 899999999999999998887654
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=319.57 Aligned_cols=207 Identities=28% Similarity=0.416 Sum_probs=176.3
Q ss_pred CcEEEEeEEEEeCCCCC---------------------CCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCC
Q 001580 40 PAISIRNGYFSWDSKAE---------------------RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS 98 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~~---------------------~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~ 98 (1050)
..|+++|+++-|++++. ..-++|+||+|++||+..|.|-||||||||++++.++++|+.
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~ 82 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTR 82 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCC
Confidence 35899999999975321 125799999999999999999999999999999999999999
Q ss_pred CCeeE----------------EeCcEEEEecCCCCC-cccHHHHhccCCCC----CHH---HHHHHHHHhCcHHHHhcCC
Q 001580 99 DASAV----------------IRGTVAYVPQVSWIF-NATVRDNILFGSAF----EPA---RYEKAIDVTSLQHDLDLLP 154 (1050)
Q Consensus 99 g~~~~----------------~~~~i~~v~Q~~~l~-~~TV~eni~~g~~~----~~~---~~~~~~~~~~l~~~~~~~~ 154 (1050)
|.+.. .+.++++|+|+.-|+ ..||.||+.||.+. +.+ +..+.++..+|...-+..|
T Consensus 83 G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp 162 (386)
T COG4175 83 GEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP 162 (386)
T ss_pred ceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc
Confidence 87643 234699999998875 78999999999543 123 3344566777777766666
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhh-
Q 001580 155 GGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ- 232 (1050)
Q Consensus 155 ~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~- 232 (1050)
.+||||+||||.|||||+.+|+|||+|||||+|||-.+..+.+.|+++.. -++|+|+||||++++-+
T Consensus 163 -----------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlri 231 (386)
T COG4175 163 -----------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRI 231 (386)
T ss_pred -----------ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhc
Confidence 48999999999999999999999999999999999999999999987654 48999999999999766
Q ss_pred cCEEEEEcCCeEeeccChhhhhcCh
Q 001580 233 VDRIILVHEGMVKEEGTFEDLSNNG 257 (1050)
Q Consensus 233 ~d~i~~l~~G~i~~~g~~~~l~~~~ 257 (1050)
-|||.+|++|+|+..|+++|+..++
T Consensus 232 G~rIaimkdG~ivQ~Gtp~eIl~~P 256 (386)
T COG4175 232 GDRIAIMKDGEIVQVGTPEEILLNP 256 (386)
T ss_pred cceEEEecCCeEEEeCCHHHHHcCc
Confidence 4999999999999999999998764
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-36 Score=333.31 Aligned_cols=207 Identities=23% Similarity=0.383 Sum_probs=165.3
Q ss_pred cEEEEeEEEEeCCCC--CCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE---------------
Q 001580 41 AISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 103 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~--~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------- 103 (1050)
.|+++|++++|+.+. .+++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+..
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 85 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEV 85 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccH
Confidence 489999999997432 136999999999999999999999999999999999999999876532
Q ss_pred --EeCcEEEEecCCC--CCcccHHHHhccCCC---CCHHH----HHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHH
Q 001580 104 --IRGTVAYVPQVSW--IFNATVRDNILFGSA---FEPAR----YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 172 (1050)
Q Consensus 104 --~~~~i~~v~Q~~~--l~~~TV~eni~~g~~---~~~~~----~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGq 172 (1050)
.+..|+|++|++. ++..||+||+.++.. ..... ....++..++.. ...+....+|||||
T Consensus 86 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~----------~~~~~~~~~LS~Gq 155 (289)
T PRK13645 86 KRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPE----------DYVKRSPFELSGGQ 155 (289)
T ss_pred HHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hHhcCChhhCCHHH
Confidence 1235999999984 467799999987532 11111 112223333211 01234557899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccCh
Q 001580 173 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTF 250 (1050)
Q Consensus 173 rqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 250 (1050)
||||+|||||+.+|++|||||||++||+.+++.+++.+.+... .|+|+|++||+++++.. ||++++|++|++++.|++
T Consensus 156 ~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~ 235 (289)
T PRK13645 156 KRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSP 235 (289)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999998776544 48999999999998865 799999999999999998
Q ss_pred hhhhcCh
Q 001580 251 EDLSNNG 257 (1050)
Q Consensus 251 ~~l~~~~ 257 (1050)
+++.+..
T Consensus 236 ~~~~~~~ 242 (289)
T PRK13645 236 FEIFSNQ 242 (289)
T ss_pred HHHhcCH
Confidence 8876543
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=337.03 Aligned_cols=200 Identities=23% Similarity=0.431 Sum_probs=166.2
Q ss_pred cEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE-----------EeCcEE
Q 001580 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVA 109 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i~ 109 (1050)
.++++|++++|+ ++.+|+|+||++++|+++||+||||||||||+++|+|+++|++|.+.. .+..+|
T Consensus 2 ~l~~~~l~~~~~---~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig 78 (301)
T TIGR03522 2 SIRVSSLTKLYG---TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEEEC---CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceE
Confidence 378999999996 356999999999999999999999999999999999999999886532 123599
Q ss_pred EEecCCCCC-cccHHHHhccCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHH
Q 001580 110 YVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 181 (1050)
Q Consensus 110 ~v~Q~~~l~-~~TV~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAra 181 (1050)
|+||++.++ ..||.||+.+... .. .++....++..++.+.. +....+||||||||++||||
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~la~a 147 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQ-----------HKKIGQLSKGYRQRVGLAQA 147 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-----------cCchhhCCHHHHHHHHHHHH
Confidence 999999887 5699999975321 11 12233344444444332 33456899999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhhhc
Q 001580 182 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 255 (1050)
Q Consensus 182 L~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 255 (1050)
|+++|+++||||||+|||+.+++++++.+.... +++|+|++||+++++.. ||||++|++|++++.|+.+++..
T Consensus 148 l~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG-KDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 999999999999999999999999999887664 47999999999999876 89999999999999999988753
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=327.92 Aligned_cols=201 Identities=26% Similarity=0.425 Sum_probs=166.6
Q ss_pred cEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeEE------------eCcE
Q 001580 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------RGTV 108 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~------------~~~i 108 (1050)
+++++|++++|+ ++++|+++||++++|++++|+|+||||||||+++|+|+++|++|.+... +..+
T Consensus 2 ~l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 78 (255)
T PRK11231 2 TLRTENLTVGYG---TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRL 78 (255)
T ss_pred EEEEEeEEEEEC---CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhhe
Confidence 488999999996 3579999999999999999999999999999999999999998865321 2349
Q ss_pred EEEecCCCCC-cccHHHHhccCCC-----C---C---HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHH
Q 001580 109 AYVPQVSWIF-NATVRDNILFGSA-----F---E---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 176 (1050)
Q Consensus 109 ~~v~Q~~~l~-~~TV~eni~~g~~-----~---~---~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv 176 (1050)
+|++|++.++ ..||.||+.++.. + . ..+....++..++.+..+ ....+|||||||||
T Consensus 79 ~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv 147 (255)
T PRK11231 79 ALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLAD-----------RRLTDLSGGQRQRA 147 (255)
T ss_pred EEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHc-----------CCcccCCHHHHHHH
Confidence 9999999876 4599999987621 1 1 122333444455543332 34468999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhhhc
Q 001580 177 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 255 (1050)
Q Consensus 177 ~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 255 (1050)
+|||||+.+|++|||||||++||+.+++.+.+.+.+...+|+|+|++||+++++.. +|++++|++|+++..|+++++..
T Consensus 148 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 148 FLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 99999999999999999999999999999999887665568999999999999875 79999999999999999888754
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=325.80 Aligned_cols=200 Identities=27% Similarity=0.433 Sum_probs=163.8
Q ss_pred cEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE-----------------
Q 001580 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------- 103 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------------- 103 (1050)
.++++|++|.|+. +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.+..
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 4789999999963 57999999999999999999999999999999999999999886532
Q ss_pred -EeCcEEEEecCCCCC-cccHHHHhccCC----CCCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHH
Q 001580 104 -IRGTVAYVPQVSWIF-NATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 173 (1050)
Q Consensus 104 -~~~~i~~v~Q~~~l~-~~TV~eni~~g~----~~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqr 173 (1050)
.+..|+|+||++.++ ..||.||+.++. .... .+....++..++.... +....+||||||
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~ 147 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYA-----------DRFPLHLSGGQQ 147 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHH
Confidence 123599999999887 569999996421 0111 1222233344443322 334468999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhh
Q 001580 174 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 252 (1050)
Q Consensus 174 qRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 252 (1050)
|||+|||||+.+|+++||||||++||+.+++++.+.+.+...+|+|+|++||+++++.. +|++++|++|++++.|++++
T Consensus 148 qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 227 (242)
T PRK11124 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999887665568999999999999875 79999999999999998877
Q ss_pred hh
Q 001580 253 LS 254 (1050)
Q Consensus 253 l~ 254 (1050)
+.
T Consensus 228 ~~ 229 (242)
T PRK11124 228 FT 229 (242)
T ss_pred hc
Confidence 54
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=331.46 Aligned_cols=203 Identities=25% Similarity=0.438 Sum_probs=166.9
Q ss_pred cEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE--------------EeC
Q 001580 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IRG 106 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------~~~ 106 (1050)
+|+++|++|+|+. .+++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|.+.. .+.
T Consensus 1 ~l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (275)
T PRK13639 1 ILETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRK 78 (275)
T ss_pred CEEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHh
Confidence 3789999999962 346999999999999999999999999999999999999998875532 123
Q ss_pred cEEEEecCC--CCCcccHHHHhccCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHH
Q 001580 107 TVAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 177 (1050)
Q Consensus 107 ~i~~v~Q~~--~l~~~TV~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~ 177 (1050)
.|+|++|++ .++..||.||+.++.. ... ++....++..++....+ ....+||||||||++
T Consensus 79 ~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LS~Gq~qrv~ 147 (275)
T PRK13639 79 TVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFEN-----------KPPHHLSGGQKKRVA 147 (275)
T ss_pred heEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhc-----------CChhhCCHHHHHHHH
Confidence 599999997 4577899999987521 111 12333444445433222 234689999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhhhcC
Q 001580 178 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 256 (1050)
Q Consensus 178 LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 256 (1050)
|||||+.+|+++||||||++||+.++.++++.+.+...+|.|+|++||+++++.. ||++++|++|++++.|+++++...
T Consensus 148 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 148 IAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999887765568999999999999874 899999999999999999887654
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=321.50 Aligned_cols=190 Identities=26% Similarity=0.430 Sum_probs=156.3
Q ss_pred EEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE---------------EeC
Q 001580 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IRG 106 (1050)
Q Consensus 42 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------~~~ 106 (1050)
++++|++++|+. .+++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+.
T Consensus 1 l~~~~l~~~~~~--~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPN--GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCC--CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 478999999963 257999999999999999999999999999999999999999876532 123
Q ss_pred cEEEEecCCCCC-cccHHHHhccCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHH
Q 001580 107 TVAYVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 178 (1050)
Q Consensus 107 ~i~~v~Q~~~l~-~~TV~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~L 178 (1050)
.++|++|++.++ ..|++||+.++.. ... ++....++..++.+..+. ...+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRA-----------LPAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-----------ChhhcCHHHHHHHHH
Confidence 599999999887 4799999987521 111 123344555555443332 335899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeE
Q 001580 179 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMV 244 (1050)
Q Consensus 179 AraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i 244 (1050)
||||+.+|+++||||||++||+.+++++.+.+.+...+|+|+|++||+++++.. ||++++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999887765568999999999999986 799999999863
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-36 Score=328.81 Aligned_cols=210 Identities=19% Similarity=0.299 Sum_probs=166.0
Q ss_pred CCCCCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCCCeeE-------
Q 001580 36 TSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-----PVSDASAV------- 103 (1050)
Q Consensus 36 ~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~-----~~~g~~~~------- 103 (1050)
+++.+.|+++|++|+|+ ++++|+|+||++++|++++|+|+||||||||+++|+|+.+ |++|.+..
T Consensus 16 ~~~~~~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 92 (268)
T PRK14248 16 EAKEHILEVKDLSIYYG---EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILD 92 (268)
T ss_pred CCCCceEEEEEEEEEeC---CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccc
Confidence 34445799999999996 3579999999999999999999999999999999999864 56775422
Q ss_pred -------EeCcEEEEecCCCCCcccHHHHhccCCCC----CH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCC
Q 001580 104 -------IRGTVAYVPQVSWIFNATVRDNILFGSAF----EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI 168 (1050)
Q Consensus 104 -------~~~~i~~v~Q~~~l~~~TV~eni~~g~~~----~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~L 168 (1050)
.+..++|++|++.++..||+||+.++... .. +.....++..++...+ ....+....+|
T Consensus 93 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~L 165 (268)
T PRK14248 93 SNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEV-------KDRLHSSALSL 165 (268)
T ss_pred ccccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcch-------HHHHhcCcccC
Confidence 12359999999998877999999875211 11 1112222333322111 01234556789
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeec
Q 001580 169 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEE 247 (1050)
Q Consensus 169 SGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~ 247 (1050)
|||||||++|||||+.+|++|||||||++||+.+++++.+.+.+.. +++|+|++||+++++.. ||++++|++|++++.
T Consensus 166 SgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~ 244 (268)
T PRK14248 166 SGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELK-EEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEY 244 (268)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999877654 36899999999998865 799999999999999
Q ss_pred cChhhhhcC
Q 001580 248 GTFEDLSNN 256 (1050)
Q Consensus 248 g~~~~l~~~ 256 (1050)
|+++++..+
T Consensus 245 ~~~~~~~~~ 253 (268)
T PRK14248 245 DQTEQIFTS 253 (268)
T ss_pred CCHHHHHhC
Confidence 998877543
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=329.03 Aligned_cols=203 Identities=27% Similarity=0.386 Sum_probs=167.8
Q ss_pred CCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeEE------------eC
Q 001580 39 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------RG 106 (1050)
Q Consensus 39 ~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~------------~~ 106 (1050)
.+.|+++|++|.|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+... +.
T Consensus 9 ~~~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 85 (265)
T PRK10575 9 DTTFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR 85 (265)
T ss_pred CceEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhh
Confidence 356999999999963 479999999999999999999999999999999999999998865321 23
Q ss_pred cEEEEecCCCCC-cccHHHHhccCCC--------CC---HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHH
Q 001580 107 TVAYVPQVSWIF-NATVRDNILFGSA--------FE---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 174 (1050)
Q Consensus 107 ~i~~v~Q~~~l~-~~TV~eni~~g~~--------~~---~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrq 174 (1050)
.++|++|++.++ ..||.||+.++.. .. ..+....++.+++.+.++.. ..+|||||||
T Consensus 86 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~q 154 (265)
T PRK10575 86 KVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL-----------VDSLSGGERQ 154 (265)
T ss_pred heEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----------cccCCHHHHH
Confidence 599999998765 5699999987531 01 12334455556665444333 3589999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhh
Q 001580 175 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 252 (1050)
Q Consensus 175 Rv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 252 (1050)
||+|||||+.+|+||||||||++||+.+++.+.+.+..... .|.|+|++||+++++.. ||++++|++|++++.|+.++
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~ 234 (265)
T PRK10575 155 RAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAE 234 (265)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHH
Confidence 99999999999999999999999999999999998876544 48999999999999865 79999999999999998887
Q ss_pred hhc
Q 001580 253 LSN 255 (1050)
Q Consensus 253 l~~ 255 (1050)
+..
T Consensus 235 ~~~ 237 (265)
T PRK10575 235 LMR 237 (265)
T ss_pred hcC
Confidence 754
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=344.52 Aligned_cols=205 Identities=26% Similarity=0.395 Sum_probs=168.5
Q ss_pred cEEEEeEEEEeCCCCC---------------------CCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCC
Q 001580 41 AISIRNGYFSWDSKAE---------------------RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 99 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~---------------------~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g 99 (1050)
.|+++|+++.|+..+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 5888888888864321 1379999999999999999999999999999999999999988
Q ss_pred CeeEE----------------eCcEEEEecCCCCC-cccHHHHhccCCC---CCH----HHHHHHHHHhCcHHHHhcCCC
Q 001580 100 ASAVI----------------RGTVAYVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPG 155 (1050)
Q Consensus 100 ~~~~~----------------~~~i~~v~Q~~~l~-~~TV~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~ 155 (1050)
.+..- +..+|||+|++.++ ..||+||+.++.. ... ++....++..++.+..+.
T Consensus 84 ~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~--- 160 (400)
T PRK10070 84 QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHS--- 160 (400)
T ss_pred EEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhc---
Confidence 65320 23699999999887 5799999987632 121 223344555555444333
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhh-c
Q 001580 156 GDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-V 233 (1050)
Q Consensus 156 g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~-~ 233 (1050)
...+|||||||||+|||||+.+|++|||||||++||+.+++.+++.+.+... .|+|+|+||||++++.. +
T Consensus 161 --------~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~ 232 (400)
T PRK10070 161 --------YPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIG 232 (400)
T ss_pred --------CcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhC
Confidence 3358999999999999999999999999999999999999999998877643 58999999999999865 7
Q ss_pred CEEEEEcCCeEeeccChhhhhcC
Q 001580 234 DRIILVHEGMVKEEGTFEDLSNN 256 (1050)
Q Consensus 234 d~i~~l~~G~i~~~g~~~~l~~~ 256 (1050)
|+|++|++|++++.|+++++...
T Consensus 233 Dri~vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 233 DRIAIMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred CEEEEEECCEEEecCCHHHHHhC
Confidence 99999999999999999888654
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-37 Score=300.83 Aligned_cols=212 Identities=29% Similarity=0.425 Sum_probs=186.0
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
|+++||+++|+.. .+++++|++|++|.+++|+||||||||||+.++.|++++++|+|.++|.++...+...+.+.+++
T Consensus 2 I~i~nv~K~y~~~--~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 2 ITIENVSKSYGTK--VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred eeehhhhHhhCCE--EeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHH
Confidence 6889999999754 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCcccccc-cHHHhcccCC------CCCH---HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001580 746 IPQSPVLFSG-TVRFNLDPFS------EHSD---ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 815 (1050)
Q Consensus 746 v~Q~~~lf~~-tv~~nl~~~~------~~~~---~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lAr 815 (1050)
+-|+..+-.. ||++-+.|++ ..+. .-+.++++-.++.+.-.+ .-.+||||||||.-+|.
T Consensus 80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dr-----------yLd~LSGGQrQRAfIAM 148 (252)
T COG4604 80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDR-----------YLDELSGGQRQRAFIAM 148 (252)
T ss_pred HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHH-----------hHHhcccchhhhhhhhe
Confidence 9999987654 9998766542 1121 225666666555544333 23469999999999999
Q ss_pred HHccCCCEEEEeccCcCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001580 816 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890 (1050)
Q Consensus 816 all~~p~illLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 890 (1050)
.+.++.+.++||||.++||......+++.|+++.. ++|+++|-||..++.. +|+|+.|++|+++..|+|+|+++.
T Consensus 149 VlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 149 VLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred eeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence 99999999999999999999999999999998664 7999999999999987 999999999999999999999864
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=326.58 Aligned_cols=203 Identities=27% Similarity=0.429 Sum_probs=163.7
Q ss_pred EEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE------------EeCcEE
Q 001580 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 109 (1050)
Q Consensus 42 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 109 (1050)
++++|++|+|+.. +++|+++||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4689999999731 56999999999999999999999999999999999999999876532 123589
Q ss_pred EEecCCCCC-cccHHHHhccCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHH
Q 001580 110 YVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 181 (1050)
Q Consensus 110 ~v~Q~~~l~-~~TV~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAra 181 (1050)
|++|++.++ ..||+||+.++.. .+. ++..+.++..++.. .......+.+|||||||||+||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHH
Confidence 999999887 5799999987521 111 12222333333321 001234457899999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhhhc
Q 001580 182 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 255 (1050)
Q Consensus 182 L~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 255 (1050)
|+.+|+++||||||++||+.++.++.+.+.+... +|+|+|++||+++++.. +|++++|++|++++.|+++++..
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 225 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence 9999999999999999999999999998877654 48999999999998765 79999999999999998877643
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-36 Score=326.88 Aligned_cols=203 Identities=22% Similarity=0.373 Sum_probs=165.3
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE-------------EeC
Q 001580 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRG 106 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~ 106 (1050)
..++++|+++.|+ ++++|+++||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+.
T Consensus 4 ~~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (255)
T PRK11300 4 PLLSVSGLMMRFG---GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARM 80 (255)
T ss_pred ceEEEeeEEEEEC---CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhc
Confidence 3699999999996 357999999999999999999999999999999999999999886432 112
Q ss_pred cEEEEecCCCCC-cccHHHHhccCCCC----------------C-H-----HHHHHHHHHhCcHHHHhcCCCCCcccccC
Q 001580 107 TVAYVPQVSWIF-NATVRDNILFGSAF----------------E-P-----ARYEKAIDVTSLQHDLDLLPGGDVTEIGE 163 (1050)
Q Consensus 107 ~i~~v~Q~~~l~-~~TV~eni~~g~~~----------------~-~-----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~ 163 (1050)
.++|++|++.++ ..||+||+.++... . . .+....++..++.. ..+.
T Consensus 81 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~ 149 (255)
T PRK11300 81 GVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLE-----------HANR 149 (255)
T ss_pred CeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhh-----------hhhC
Confidence 489999999887 46999999875210 0 0 01111222222221 2345
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccC-CcEEEEeccCcchhhh-cCEEEEEcC
Q 001580 164 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHE 241 (1050)
Q Consensus 164 ~g~~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~-g~t~ilvtH~~~~l~~-~d~i~~l~~ 241 (1050)
...+||||||||++|||||+.+|++|||||||++||+.+++.+++.+.+...+ |.|+|++||+++++.. ||++++|++
T Consensus 150 ~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~ 229 (255)
T PRK11300 150 QAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQ 229 (255)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 56789999999999999999999999999999999999999999988776544 8999999999999865 899999999
Q ss_pred CeEeeccChhhhhcC
Q 001580 242 GMVKEEGTFEDLSNN 256 (1050)
Q Consensus 242 G~i~~~g~~~~l~~~ 256 (1050)
|++++.|+.+++...
T Consensus 230 g~i~~~~~~~~~~~~ 244 (255)
T PRK11300 230 GTPLANGTPEEIRNN 244 (255)
T ss_pred CeEEecCCHHHHhhC
Confidence 999999998876543
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=326.73 Aligned_cols=204 Identities=20% Similarity=0.331 Sum_probs=166.1
Q ss_pred cEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCC---CCCCCeeE------------Ee
Q 001580 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP---PVSDASAV------------IR 105 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~---~~~g~~~~------------~~ 105 (1050)
.|+++|+++.|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++ |++|.+.. .+
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 4789999999963 579999999999999999999999999999999999974 57775432 12
Q ss_pred CcEEEEecCCCCCcccHHHHhccCCCC-----C-H---HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHH
Q 001580 106 GTVAYVPQVSWIFNATVRDNILFGSAF-----E-P---ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 176 (1050)
Q Consensus 106 ~~i~~v~Q~~~l~~~TV~eni~~g~~~-----~-~---~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv 176 (1050)
..++|+||++.++..||+||+.++... . . ++....++..++...+.. .....+.+|||||||||
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHH
Confidence 359999999998888999999875211 1 1 122334455555322211 23445678999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhhhc
Q 001580 177 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 255 (1050)
Q Consensus 177 ~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 255 (1050)
+|||||+.+|+++||||||++||+.++.++.+.+.+.. +++|+|++||+++++.. +|++++|++|++++.|+.+++..
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS-HNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999877654 48999999999999875 79999999999999999887754
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=326.19 Aligned_cols=201 Identities=29% Similarity=0.436 Sum_probs=166.3
Q ss_pred cEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE------------EeCcE
Q 001580 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 108 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 108 (1050)
+|+++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..+
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (258)
T PRK13548 2 MLEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR 78 (258)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhhe
Confidence 4889999999963 56999999999999999999999999999999999999999886532 12358
Q ss_pred EEEecCCCC-CcccHHHHhccCCC-C--C----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHH
Q 001580 109 AYVPQVSWI-FNATVRDNILFGSA-F--E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 180 (1050)
Q Consensus 109 ~~v~Q~~~l-~~~TV~eni~~g~~-~--~----~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAr 180 (1050)
+|++|++.+ +..||+||+.++.. . . ..+....++..++....+ ....+|||||||||+|||
T Consensus 79 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGe~qrv~la~ 147 (258)
T PRK13548 79 AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAG-----------RDYPQLSGGEQQRVQLAR 147 (258)
T ss_pred EEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHH
Confidence 999999987 57899999987532 1 1 112333444455543332 334689999999999999
Q ss_pred HHc------cCCCEEEEeCCCCCcCHHHHHHHHHHHHccc-cCCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhh
Q 001580 181 AVY------SNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 252 (1050)
Q Consensus 181 aL~------~~~~vllLDEPts~LD~~~~~~l~~~l~~~~-~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 252 (1050)
||+ .+|+++||||||++||+.+++.+.+.+.+.. .+|+|+|++||+++++.. ||+|++|++|++++.|++++
T Consensus 148 al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (258)
T PRK13548 148 VLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE 227 (258)
T ss_pred HHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHH
Confidence 999 5999999999999999999999999887765 468999999999999874 79999999999999999887
Q ss_pred hhc
Q 001580 253 LSN 255 (1050)
Q Consensus 253 l~~ 255 (1050)
+..
T Consensus 228 ~~~ 230 (258)
T PRK13548 228 VLT 230 (258)
T ss_pred HhC
Confidence 764
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=329.17 Aligned_cols=202 Identities=28% Similarity=0.441 Sum_probs=165.6
Q ss_pred cEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE----E------------
Q 001580 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----I------------ 104 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----~------------ 104 (1050)
.++++|++|.|+ ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. +
T Consensus 5 ~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (257)
T PRK10619 5 KLNVIDLHKRYG---EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKV 81 (257)
T ss_pred cEEEeeeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccc
Confidence 489999999996 357999999999999999999999999999999999999998875421 1
Q ss_pred ---------eCcEEEEecCCCCC-cccHHHHhccCC----CCCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCC
Q 001580 105 ---------RGTVAYVPQVSWIF-NATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV 166 (1050)
Q Consensus 105 ---------~~~i~~v~Q~~~l~-~~TV~eni~~g~----~~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~ 166 (1050)
+..++|+||++.++ ..||+||+.++. .... .+..+.++..++.... .+....
T Consensus 82 ~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~~ 151 (257)
T PRK10619 82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QGKYPV 151 (257)
T ss_pred ccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hhCCcc
Confidence 23599999999887 479999997642 1111 1222233333332221 133457
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEe
Q 001580 167 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVK 245 (1050)
Q Consensus 167 ~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~ 245 (1050)
+||||||||++|||||+.+|+++||||||++||+.+++++++.+.+...+|+|+|+||||++++.. ||||++|++|+++
T Consensus 152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 231 (257)
T PRK10619 152 HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 231 (257)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 899999999999999999999999999999999999999999887765568999999999999986 7999999999999
Q ss_pred eccChhhhhc
Q 001580 246 EEGTFEDLSN 255 (1050)
Q Consensus 246 ~~g~~~~l~~ 255 (1050)
+.|+++++..
T Consensus 232 ~~~~~~~~~~ 241 (257)
T PRK10619 232 EEGAPEQLFG 241 (257)
T ss_pred EeCCHHHhhh
Confidence 9999887653
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-36 Score=329.15 Aligned_cols=206 Identities=26% Similarity=0.372 Sum_probs=167.7
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE------------EeCc
Q 001580 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 107 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 107 (1050)
+.|+++|+++.|+.. .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..
T Consensus 6 ~~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (269)
T PRK13648 6 SIIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84 (269)
T ss_pred ceEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence 469999999999742 246999999999999999999999999999999999999999886532 1235
Q ss_pred EEEEecCCC--CCcccHHHHhccCCC---CCHH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHH
Q 001580 108 VAYVPQVSW--IFNATVRDNILFGSA---FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 178 (1050)
Q Consensus 108 i~~v~Q~~~--l~~~TV~eni~~g~~---~~~~----~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~L 178 (1050)
++|++|+|. ++..|+.+|+.++.. .... +....++..++.+.. .....+||||||||++|
T Consensus 85 i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~l 153 (269)
T PRK13648 85 IGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERA-----------DYEPNALSGGQKQRVAI 153 (269)
T ss_pred eeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCCcccCCHHHHHHHHH
Confidence 899999985 457799999987632 1111 122333333433222 23456899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhhcCEEEEEcCCeEeeccChhhhhcCh
Q 001580 179 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNG 257 (1050)
Q Consensus 179 AraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 257 (1050)
||||+.+|+++||||||++||+.+++.+++.+.+... .|+|+|++||+++++..||+|++|++|++++.|+++++....
T Consensus 154 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 233 (269)
T PRK13648 154 AGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233 (269)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcCH
Confidence 9999999999999999999999999999998876544 489999999999998889999999999999999988876543
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-36 Score=324.64 Aligned_cols=200 Identities=20% Similarity=0.350 Sum_probs=163.9
Q ss_pred cEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE-------------EeCc
Q 001580 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 107 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~ 107 (1050)
.|+++|+++.|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..
T Consensus 2 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 2 ILYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred eEEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence 4899999999963 47999999999999999999999999999999999999999886432 1124
Q ss_pred EEEEecCCCCCc-ccHHHHhccCCCCC---------------HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHH
Q 001580 108 VAYVPQVSWIFN-ATVRDNILFGSAFE---------------PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 171 (1050)
Q Consensus 108 i~~v~Q~~~l~~-~TV~eni~~g~~~~---------------~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGG 171 (1050)
++|++|++.++. .||+||+.++.... ..+....++..++.+ .......+||||
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G 147 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLAD-----------EADRLAGLLSHG 147 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHH
Confidence 999999998874 69999998753210 011122222222221 234455789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccCh
Q 001580 172 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTF 250 (1050)
Q Consensus 172 qrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 250 (1050)
|||||+|||||+.+|+++||||||++||+.+++++++.+.+... ++|+|++||+++++.. ||+|++|++|++++.|++
T Consensus 148 e~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~ 226 (242)
T TIGR03411 148 QKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSL 226 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCH
Confidence 99999999999999999999999999999999999998776543 6899999999999975 899999999999999998
Q ss_pred hhhhc
Q 001580 251 EDLSN 255 (1050)
Q Consensus 251 ~~l~~ 255 (1050)
+++..
T Consensus 227 ~~~~~ 231 (242)
T TIGR03411 227 DQVQA 231 (242)
T ss_pred HHHhc
Confidence 88764
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=315.99 Aligned_cols=173 Identities=28% Similarity=0.444 Sum_probs=143.1
Q ss_pred CCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCC--CChHHHhhheEEEcCCc--ccccc
Q 001580 680 PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK--FGLMDLRKILGIIPQSP--VLFSG 755 (1050)
Q Consensus 680 ~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~--~~~~~~r~~i~~v~Q~~--~lf~~ 755 (1050)
..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.++|+||++ .+|..
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 369999999999999999999999999999999999999999999999999852 22345678899999998 46778
Q ss_pred cHHHhcccCC---CCCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEec
Q 001580 756 TVRFNLDPFS---EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 828 (1050)
Q Consensus 756 tv~~nl~~~~---~~~~~----~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~illLDE 828 (1050)
|+++|+.+.. ...+. ++.++++.. |++........+||||||||++|||||+++|++|||||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAV-----------GASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9999996521 11222 223333333 34444455567899999999999999999999999999
Q ss_pred cCcCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchh
Q 001580 829 ATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT 863 (1050)
Q Consensus 829 pts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~ 863 (1050)
||++||+.+.+.+.+.|++.. +++|+|++||++++
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 999999999999999999864 47899999999875
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=313.42 Aligned_cols=206 Identities=24% Similarity=0.399 Sum_probs=171.8
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeEE-------------eC
Q 001580 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------------RG 106 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~-------------~~ 106 (1050)
+.+++++++++|+ .-.+++||||++++||+++|+||||||||||+|+|+|.++|++|.+... +.
T Consensus 3 ~lL~v~~l~k~FG---Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~ 79 (250)
T COG0411 3 PLLEVRGLSKRFG---GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARL 79 (250)
T ss_pred ceeeeccceeecC---CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhc
Confidence 4578999999996 3479999999999999999999999999999999999999998876531 23
Q ss_pred cEEEEecCCCCC-cccHHHHhccCCCC---------------CH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCC
Q 001580 107 TVAYVPQVSWIF-NATVRDNILFGSAF---------------EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV 166 (1050)
Q Consensus 107 ~i~~v~Q~~~l~-~~TV~eni~~g~~~---------------~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~ 166 (1050)
.|+.-+|.+.+| +.||.||++.+... ++ ++....++.++|.+.. ++...
T Consensus 80 Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a-----------~~~A~ 148 (250)
T COG0411 80 GIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELA-----------DRPAG 148 (250)
T ss_pred cceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhh-----------cchhh
Confidence 488999999987 78999999876220 01 1112233444444333 34557
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhh-cCEEEEEcCCeE
Q 001580 167 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMV 244 (1050)
Q Consensus 167 ~LSGGqrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i 244 (1050)
+||+|||+|+.|||||+.+|++||||||.+||.|.....+.+.+.+... .|.|+++|.||+..+.. ||||+||+.|++
T Consensus 149 ~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~ 228 (250)
T COG0411 149 NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEV 228 (250)
T ss_pred cCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcC
Confidence 8999999999999999999999999999999999999999998887665 57999999999999765 799999999999
Q ss_pred eeccChhhhhcChHH
Q 001580 245 KEEGTFEDLSNNGEL 259 (1050)
Q Consensus 245 ~~~g~~~~l~~~~~~ 259 (1050)
+++|+++++.+++..
T Consensus 229 IAeG~P~eV~~dp~V 243 (250)
T COG0411 229 IAEGTPEEVRNNPRV 243 (250)
T ss_pred cccCCHHHHhcCHHh
Confidence 999999999888653
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=322.99 Aligned_cols=186 Identities=27% Similarity=0.455 Sum_probs=155.0
Q ss_pred EEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEEEcCCccc---ccccHHHhcccC
Q 001580 688 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVL---FSGTVRFNLDPF 764 (1050)
Q Consensus 688 ~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l---f~~tv~~nl~~~ 764 (1050)
|+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++. ..+++++|+||++.+ +..|+.+|+.+.
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998763 356789999999876 346999998542
Q ss_pred CC--------CC---HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCC
Q 001580 765 SE--------HS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAV 833 (1050)
Q Consensus 765 ~~--------~~---~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~illLDEpts~L 833 (1050)
.. .. ++++.++++..++ +........+||||||||++|||||+++|++|||||||++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~L 144 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGL-----------TELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGL 144 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCC-----------chhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 10 11 1223444444443 33344455679999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001580 834 DVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890 (1050)
Q Consensus 834 D~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 890 (1050)
|+.++..+.+.|+++. ++.|+|++||+++++.. ||+++++ +|++++.|+++++..+
T Consensus 145 D~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~ 202 (223)
T TIGR03771 145 DMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP 202 (223)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh
Confidence 9999999999999865 47899999999999876 9999999 8999999999998653
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=323.45 Aligned_cols=199 Identities=28% Similarity=0.478 Sum_probs=162.2
Q ss_pred EEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeEE-------------eCcE
Q 001580 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------------RGTV 108 (1050)
Q Consensus 42 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~-------------~~~i 108 (1050)
|+++|+++.|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+..- +..+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 478999999963 479999999999999999999999999999999999999998865321 2359
Q ss_pred EEEecCCCCCc-ccHHHHhccCCCC-C---HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHc
Q 001580 109 AYVPQVSWIFN-ATVRDNILFGSAF-E---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 183 (1050)
Q Consensus 109 ~~v~Q~~~l~~-~TV~eni~~g~~~-~---~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~ 183 (1050)
+|++|++.++. .||.||+.++... . .+...+.++..+. +. ........+||||||||++|||||+
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~---l~-------~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPV---LK-------EMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHh---HH-------HHhhCChhhCCHHHHHHHHHHHHHh
Confidence 99999998874 6999999875321 1 1112222222221 10 1223455789999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHcccc-CCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhhh
Q 001580 184 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 253 (1050)
Q Consensus 184 ~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 253 (1050)
.+|+++||||||++||+.+++++++.+.+... .|+|+|++||+++++.. +|+++++++|++++.|+.+++
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999998877654 48999999999999985 799999999999999998876
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=319.94 Aligned_cols=189 Identities=33% Similarity=0.545 Sum_probs=153.9
Q ss_pred EEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeE------------EeCcEEE
Q 001580 43 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAY 110 (1050)
Q Consensus 43 ~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~ 110 (1050)
+++|+++.|+.. ++++|+++||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..++|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 368999999632 257999999999999999999999999999999999999999886532 1235899
Q ss_pred EecCCC--CCcccHHHHhccCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHH
Q 001580 111 VPQVSW--IFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 181 (1050)
Q Consensus 111 v~Q~~~--l~~~TV~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAra 181 (1050)
++|++. ++..||+||+.++.. ... .+....++..++...++ ....+|||||||||+||||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~lara 148 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRD-----------RSPFTLSGGQKQRVAIAGV 148 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHHHHHHHHHHHH
Confidence 999984 467899999987521 111 12233444445443332 3446899999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCe
Q 001580 182 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGM 243 (1050)
Q Consensus 182 L~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~ 243 (1050)
|+.+|+++||||||++||+.+++++++.+.+...+|+|+|++||+++++.. ||+|++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999887765568999999999999987 89999999884
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=296.34 Aligned_cols=211 Identities=25% Similarity=0.353 Sum_probs=171.3
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEecCCcEEEEECCCCCCHHHHHHHHhccccCCccEEEECCeecCCCChHHHhhheEE
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~vs~~i~~Ge~~~ivG~~GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 745 (1050)
+.+++++.+|.+....+|+|+|++|.+||.+.++||||||||||+|+++|+.+|+.|+|.+||++|..-.. .-|+
T Consensus 4 l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga-----ergv 78 (259)
T COG4525 4 LNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA-----ERGV 78 (259)
T ss_pred eehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc-----ccee
Confidence 56789999997665569999999999999999999999999999999999999999999999999976543 4599
Q ss_pred EcCCcccccc-cHHHhcccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHHccCCCEE
Q 001580 746 IPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 824 (1050)
Q Consensus 746 v~Q~~~lf~~-tv~~nl~~~~~~~~~~~~~~l~~~~~~~~i~~~p~gl~t~v~~~~~~LSgGq~qrl~lArall~~p~il 824 (1050)
|+|++.|+.. |+.+|+.|+-... -+.++.++.-+++++.. .|+...-....-+||||||||+.|||||.-+|++|
T Consensus 79 VFQ~~~LlPWl~~~dNvafgL~l~--Gi~k~~R~~~a~q~l~~--VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~L 154 (259)
T COG4525 79 VFQNEALLPWLNVIDNVAFGLQLR--GIEKAQRREIAHQMLAL--VGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLL 154 (259)
T ss_pred EeccCccchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--hCcccccccceEeecchHHHHHHHHHHhhcCcceE
Confidence 9999999987 9999998653210 01111112222233322 23333334445689999999999999999999999
Q ss_pred EEeccCcCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEe--CCEEEEecChh
Q 001580 825 VLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLD--SGRVLEYDTPE 885 (1050)
Q Consensus 825 lLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~--~G~i~~~g~~~ 885 (1050)
+||||.++||+-|++.+++.|.+.. .|+.+++|||+.++.-- ++|++||+ .|||++.=+++
T Consensus 155 lLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 155 LLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred eecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence 9999999999999999999998854 47999999999999765 99999998 69999865544
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-36 Score=319.98 Aligned_cols=197 Identities=22% Similarity=0.353 Sum_probs=164.6
Q ss_pred EEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeEE--------eCcEEEEec
Q 001580 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI--------RGTVAYVPQ 113 (1050)
Q Consensus 42 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~--------~~~i~~v~Q 113 (1050)
++++|++++|+. +++|+++||++++|++++|+|+||||||||+++|+|+++|++|.+... ...++|+||
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q 77 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIE 77 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcC
Confidence 478999999963 579999999999999999999999999999999999999998865421 135999999
Q ss_pred CCCCC-cccHHHHhccCC---CCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEE
Q 001580 114 VSWIF-NATVRDNILFGS---AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 189 (1050)
Q Consensus 114 ~~~l~-~~TV~eni~~g~---~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~~~vl 189 (1050)
++.++ ..|++||+.++. ..+..+....++..++.+..+ ....+||||||||++|||||+.+|+++
T Consensus 78 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rv~laral~~~p~ll 146 (223)
T TIGR03740 78 SPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGK-----------KKAKQFSLGMKQRLGIAIALLNHPKLL 146 (223)
T ss_pred CCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHh-----------hhHhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99876 579999997542 123344455555555554332 233689999999999999999999999
Q ss_pred EEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccChhh
Q 001580 190 IFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 252 (1050)
Q Consensus 190 lLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 252 (1050)
||||||++||+.+++.+++.+.+...+|+|+|++||+++++.. ||++++|++|++++.|++.+
T Consensus 147 llDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 147 ILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred EECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999999887765568999999999999865 89999999999999888754
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=326.91 Aligned_cols=207 Identities=27% Similarity=0.384 Sum_probs=166.8
Q ss_pred CCcEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCCCeeE----------
Q 001580 39 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-----PVSDASAV---------- 103 (1050)
Q Consensus 39 ~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~-----~~~g~~~~---------- 103 (1050)
...|+++|++|+|+. +++|+|+||+|++|++++|+|+||||||||+++|+|.++ |++|.+..
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 346999999999963 469999999999999999999999999999999999986 46664321
Q ss_pred ----EeCcEEEEecCCCCCcccHHHHhccCCC----CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHH
Q 001580 104 ----IRGTVAYVPQVSWIFNATVRDNILFGSA----FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 171 (1050)
Q Consensus 104 ----~~~~i~~v~Q~~~l~~~TV~eni~~g~~----~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGG 171 (1050)
.+..|+|++|++.++..||+||+.++.. ... ++....++..++...+. ..++....+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCHH
Confidence 1345999999998888899999987531 122 12233344444322111 1234556789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHccccCCcEEEEeccCcchhhh-cCEEEEEcCCeEeeccCh
Q 001580 172 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTF 250 (1050)
Q Consensus 172 qrqRv~LAraL~~~~~vllLDEPts~LD~~~~~~l~~~l~~~~~~g~t~ilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 250 (1050)
||||++|||||+.+|+++||||||++||+.+++.+.+.+.+.. ++.|+|++||+++++.. +|++++|++|++++.|+.
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 239 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNT 239 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999887664 47899999999999865 799999999999999998
Q ss_pred hhhhcC
Q 001580 251 EDLSNN 256 (1050)
Q Consensus 251 ~~l~~~ 256 (1050)
+++...
T Consensus 240 ~~~~~~ 245 (260)
T PRK10744 240 DTIFTK 245 (260)
T ss_pred HHHHhC
Confidence 887543
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=325.39 Aligned_cols=196 Identities=27% Similarity=0.396 Sum_probs=160.5
Q ss_pred cEEEEeEEEEeCCCCCCCceeeceEEeeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCCCeeEE-------eCcEEEEec
Q 001580 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------RGTVAYVPQ 113 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~-------~~~i~~v~Q 113 (1050)
+|+++|+++.|+. +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+..- ...++|++|
T Consensus 1 ml~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q 77 (255)
T PRK11248 1 MLQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQ 77 (255)
T ss_pred CEEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeC
Confidence 3789999999963 579999999999999999999999999999999999999998876431 124899999
Q ss_pred CCCCC-cccHHHHhccCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCHHHHHHHHHHHHHccC
Q 001580 114 VSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 185 (1050)
Q Consensus 114 ~~~l~-~~TV~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~vg~~g~~LSGGqrqRv~LAraL~~~ 185 (1050)
++.++ ..||.||+.++.. ... .++...++..++....+ ....+|||||||||+|||||+.+
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qrl~laral~~~ 146 (255)
T PRK11248 78 NEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEK-----------RYIWQLSGGQRQRVGIARALAAN 146 (255)
T ss_pred CCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhh-----------CChhhCCHHHHHHHHHHHHHhcC
Confidence 99877 5799999987521 111 12333444445443322 33468999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHccc-cCCcEEEEeccCcchhhh-cCEEEEEc--CCeEeeccCh
Q 001580 186 SDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVH--EGMVKEEGTF 250 (1050)
Q Consensus 186 ~~vllLDEPts~LD~~~~~~l~~~l~~~~-~~g~t~ilvtH~~~~l~~-~d~i~~l~--~G~i~~~g~~ 250 (1050)
|++|||||||++||+.+++++++.+.+.. ..|+|+|++|||++++.. ||++++|+ +|++++.++.
T Consensus 147 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 147 PQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999999999999887653 358999999999999875 79999998 5999887654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1050 | ||||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 3e-60 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 2e-12 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 3e-42 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 8e-05 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 4e-42 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 1e-04 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 3e-41 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 4e-05 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 4e-41 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 5e-05 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 4e-41 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 3e-06 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 7e-41 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 5e-06 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-40 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 5e-40 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 1e-04 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 9e-40 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 3e-06 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 2e-39 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 2e-05 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-38 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 7e-06 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 1e-38 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 5e-06 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-38 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 3e-38 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 6e-06 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 3e-38 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 3e-37 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 3e-05 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 2e-33 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 3e-33 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 9e-33 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 2e-32 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 5e-32 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-29 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 5e-32 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-29 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 2e-31 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 3e-31 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 3e-29 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 1e-30 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 4e-30 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 5e-30 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 5e-30 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 5e-30 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 7e-30 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 8e-30 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 1e-29 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 8e-29 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 8e-29 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 9e-28 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 4e-22 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-21 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 6e-21 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 6e-20 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 2e-13 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 8e-09 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 4e-13 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-12 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 2e-12 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 4e-05 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 2e-12 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 2e-12 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 4e-12 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 4e-12 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 9e-12 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-11 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 6e-11 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 2e-04 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 8e-11 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-10 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 1e-10 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 1e-10 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 1e-10 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 5e-04 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 2e-10 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 5e-05 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 6e-10 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 3e-09 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 3e-05 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 4e-09 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-05 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 4e-09 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 4e-04 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 5e-09 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 6e-09 | ||
| 1g29_1 | 372 | Malk Length = 372 | 3e-08 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 5e-08 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 1e-04 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 6e-08 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 3e-07 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 4e-07 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 4e-07 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 5e-07 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 7e-07 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 9e-07 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 1e-06 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 2e-06 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 3e-06 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 3e-06 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 8e-06 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 7e-04 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 2e-05 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 2e-05 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 1e-04 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 1e-04 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 1e-04 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 2e-04 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 2e-04 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 7e-04 |
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1050 | |||
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 1e-163 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 1e-31 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 1e-128 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 2e-36 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 1e-127 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 5e-34 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 1e-126 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 8e-71 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 7e-32 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 1e-125 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 7e-37 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 2e-88 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 6e-33 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 3e-87 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 5e-36 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 6e-87 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 2e-36 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 2e-77 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 9e-33 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 1e-75 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 2e-37 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 3e-75 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 3e-22 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 3e-73 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 6e-37 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 3e-70 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 2e-34 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 9e-69 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 1e-36 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 5e-68 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 3e-36 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 2e-56 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 2e-34 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 8e-32 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 1e-21 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 6e-30 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 2e-29 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 1e-29 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 9e-23 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 9e-29 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 9e-25 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 4e-28 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 5e-18 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 4e-27 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 3e-18 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 8e-27 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 2e-19 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 2e-24 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 2e-22 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 4e-23 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 1e-13 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-22 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-20 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 7e-19 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 6e-15 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 3e-22 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 8e-22 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-19 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 7e-18 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 5e-22 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-19 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 3e-19 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 1e-12 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-21 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 6e-21 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 9e-19 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 8e-16 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 2e-18 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 3e-18 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 1e-11 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 2e-16 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 3e-09 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 2e-15 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 5e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-15 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-13 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 2e-14 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 2e-14 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 6e-08 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 6e-14 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 6e-14 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 4e-12 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 8e-14 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 1e-13 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 1e-11 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 1e-13 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 8e-11 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 3e-13 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 5e-13 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 5e-13 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 1e-07 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 1e-12 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 2e-12 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 4e-11 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 3e-12 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 4e-09 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-06 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 5e-06 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-05 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 1e-04 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 3e-11 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 4e-04 |
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 486 bits (1253), Expect = e-163
Identities = 95/348 (27%), Positives = 182/348 (52%), Gaps = 9/348 (2%)
Query: 650 VIESN--RPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKS 707
+IE++ + WPS G + +D+ +Y +L +SF+I P +VG++GRTG+GKS
Sbjct: 2 LIENSHVKKDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKS 61
Query: 708 SMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEH 767
++L+ R++ E G I IDG L RK G+IPQ +FSGT R NLDP + H
Sbjct: 62 TLLSAFLRLLNTE-GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAH 120
Query: 768 SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLD 827
SD ++W+ + L+ I + LD + + G S G +QL+ L+R++L ++KIL+LD
Sbjct: 121 SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLD 180
Query: 828 EATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEEL 887
E +A +D T +I++T+++ F CT+++ R+ +++CD+ L+++ +V +YD+ EL
Sbjct: 181 EPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILEL 240
Query: 888 LSNEGSSFSKMVQSTGAANAQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQ 947
F + N ++ A ++++ E + Q+ WL
Sbjct: 241 YHYPADRFVAGFIGSPKMNFLPVKVT---ATAIDQVQVELPMPNRQQVWLPVESRDVQVG 297
Query: 948 YALAVSLTSSH---NDLQRLEVEDQNNILKKTKDAVVTLQGVLEGKHD 992
+++ + H +D+ + +E + ++++ + + + +
Sbjct: 298 ANMSLGIRPEHLLPSDIADVILEGEVQVVEQLGNETQIHIQIPSIRQN 345
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 1e-31
Identities = 62/296 (20%), Positives = 119/296 (40%), Gaps = 23/296 (7%)
Query: 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 100
+++++ + L NI+ I G V ++G TG GK++L+SA L + +
Sbjct: 19 QMTVKDLTAKYTEGGN-AILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR----LLNT 73
Query: 101 SAVI---------------RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTS 145
I R +PQ +IF+ T R N+ +A K D
Sbjct: 74 EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVG 133
Query: 146 LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 205
L+ ++ PG + + G +S G KQ + +AR+V S + + + D+P + LD +
Sbjct: 134 LRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQI 193
Query: 206 VFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT-FEDLSNNGELFQKLM 264
+ R ++ + T +L ++ + + D+ +++ E V++ + E + F
Sbjct: 194 I-RRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGF 252
Query: 265 ENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQE 320
+ KM + + P N LP E S + S+ I+ E
Sbjct: 253 IGSPKMNFLPVKVTATAIDQVQVELPMPNRQQVWLPVE-SRDVQVGANMSLGIRPE 307
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 386 bits (995), Expect = e-128
Identities = 112/234 (47%), Positives = 159/234 (67%), Gaps = 4/234 (1%)
Query: 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 100
+I++RN F+W +++ PTL I IP G+LVA+VG G GK+SL+SA+L E+ V
Sbjct: 3 SITVRNATFTWA-RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVE-G 60
Query: 101 SAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 160
I+G+VAYVPQ +WI N ++R+NILFG E Y I +L DL++LP GD TE
Sbjct: 61 HVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTE 120
Query: 161 IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI--RGELSGK 218
IGE+GVN+SGGQKQRVS+ARAVYSN+D+++FDDPLSA+DAHVG+ +F+ I +G L K
Sbjct: 121 IGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNK 180
Query: 219 TRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEE 272
TR+LVT+ + +L QVD II++ G + E G++++L F + +
Sbjct: 181 TRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRTYASHHH 234
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 136 bits (346), Expect = 2e-36
Identities = 59/250 (23%), Positives = 118/250 (47%), Gaps = 21/250 (8%)
Query: 664 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 723
SI + + PP L+G++F+IP V +VG+ G GKSS+L+ L ++ G
Sbjct: 2 NSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 724 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN-LDPFSEHSDADL-WEALERAHL 781
+ I G +A +PQ + + ++R N L F + ++ L
Sbjct: 62 VAIKG-SVA------------YVPQQAWIQNDSLRENIL--FGCQLEEPYYRSVIQACAL 106
Query: 782 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-DAL 840
+ G ++ E G N S GQ+Q +SL+RA+ + I + D+ +AVD +
Sbjct: 107 LPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHI 166
Query: 841 IQKTI--REEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 898
+ I + K+ T +++ H ++ + D I+++ G++ E + +ELL+ +F++
Sbjct: 167 FENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFAEF 225
Query: 899 VQSTGAANAQ 908
+++ + +
Sbjct: 226 LRTYASHHHH 235
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 389 bits (1000), Expect = e-127
Identities = 82/277 (29%), Positives = 140/277 (50%), Gaps = 4/277 (1%)
Query: 11 ANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNG--YFSWDSKAERPTLLNINLDIP 68
V ++ + F L + S + FS S P L +IN I
Sbjct: 3 TEVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIE 62
Query: 69 VGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILF 128
G L+A+ G TG GKTSL+ ++GEL P G +++ Q SWI T+++NI+
Sbjct: 63 RGQLLAVAGSTGAGKTSLLMMIMGELEPSE-GKIKHSGRISFCSQNSWIMPGTIKENII- 120
Query: 129 GSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 188
G +++ RY I L+ D+ D +GE G+ +SGGQ+ R+S+ARAVY ++D+
Sbjct: 121 GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL 180
Query: 189 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEG 248
++ D P LD +++F+ C+ ++ KTR+LVT+++ L + D+I+++HEG G
Sbjct: 181 YLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYG 240
Query: 249 TFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDN 285
TF +L N F + +++ E+ + +
Sbjct: 241 TFSELQNLRPDFSSKLMGCDSFDQFSAERRNSILTET 277
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 5e-34
Identities = 58/278 (20%), Positives = 114/278 (41%), Gaps = 24/278 (8%)
Query: 633 AVERVGNYIELPSEAPL--VIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTI 690
+E V + E ++N S+ F + L PVL ++F I
Sbjct: 6 VMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLG----TPVLKDINFKI 61
Query: 691 PPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSP 750
+ + G TGAGK+S+L + +E G+I G I+ Q+
Sbjct: 62 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-RIS------------FCSQNS 108
Query: 751 VLFSGTVRFN-LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 809
+ GT++ N + + + ++ L++ I + + + + E G S GQR
Sbjct: 109 WIMPGTIKENII--GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRA 166
Query: 810 LLSLSRALLRRSKILVLDEATAAVDVRT-DALIQKTIREEFKSCTMLIIAHRLNTIIDCD 868
+SL+RA+ + + + +LD +DV T + + + + + T +++ ++ + D
Sbjct: 167 RISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKAD 226
Query: 869 RILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAAN 906
+IL+L G Y T EL + FS + + +
Sbjct: 227 KILILHEGSSYFYGTFSELQNL-RPDFSSKLMGCDSFD 263
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 414 bits (1066), Expect = e-126
Identities = 199/911 (21%), Positives = 381/911 (41%), Gaps = 80/911 (8%)
Query: 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--- 98
+ +N +FS+ S+ E L +NL + G VA+VG +G GK++ + M P+
Sbjct: 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV 447
Query: 99 --DASAV-------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDV--TSLQ 147
D + +R + V Q +F T+ +NI +G E ++ +
Sbjct: 448 SIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGR--EDVTMDEIEKAVKEANA 505
Query: 148 HD-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 206
+D + LP T +GERG +SGGQKQR+++ARA+ N + + D+ SALD V
Sbjct: 506 YDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVV 565
Query: 207 FDRCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDLSNNGELF--- 260
+ G+T +++ H LS V D I G++ E+G ++L ++
Sbjct: 566 QAA-LDKAREGRTTIVIA---HRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKL 621
Query: 261 ---QKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLI 317
Q E + K++ + +D + ++ + +++ ++ K
Sbjct: 622 VMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTK 681
Query: 318 KQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLS------YWTD 371
+ + + SF + K ++ + C + L+ + S S
Sbjct: 682 EALDEDVPPASFWRI--LKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGG 739
Query: 372 QSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVF 431
+ ++ ++ +L + + + KRL + S+LR + +
Sbjct: 740 PPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSW 799
Query: 432 FHT--NPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLW---- 485
F N G + R A D V + + Q ++ I+S + W
Sbjct: 800 FDDPKNTTGALTTRLANDA----AQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTL 855
Query: 486 ---AIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRM 542
AI+P++ + + S +K + S A EA+ T+ + +
Sbjct: 856 LLLAIVPIIAIAGVVEMKMLSGQ-ALKDKKELEGSGKIAT--EAIENFRTVVSLTREQKF 912
Query: 543 ADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTA-TFAV----VQNGSAENQE 597
+ +S+ R + I +M + A F V +
Sbjct: 913 ETMYAQSLQIPYRNAMK---KAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFEN 969
Query: 598 AFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPP 657
++ A+ + + + A + + + IE E I+S
Sbjct: 970 VLLVFSAIVFG-AMAVGQVSS----FAPDYAKATVSASHIIRIIEKTPE----IDSYSTQ 1020
Query: 658 PGWPSS--GSIKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL 713
P+ G+++F VV Y RP +P VL GLS + + +VG +G GKS+++ L
Sbjct: 1021 GLKPNMLEGNVQFSGVVFNYPTRPSIP-VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL 1079
Query: 714 FRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDA 770
R + G + +DG +I + + LR LGI+ Q P+LF ++ N+ D S
Sbjct: 1080 ERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYE 1139
Query: 771 DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 830
++ A + A++ I + +V + G S GQ+Q ++++RAL+R+ IL+LDEAT
Sbjct: 1140 EIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEAT 1199
Query: 831 AAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 890
+A+D ++ ++Q+ + + + T ++IAHRL+TI + D I+++ +G+V E+ T ++LL+
Sbjct: 1200 SALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ 1259
Query: 891 EGSSFSKMVQS 901
+G + MV
Sbjct: 1260 KG-IYFSMVSV 1269
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 257 bits (658), Expect = 8e-71
Identities = 143/716 (19%), Positives = 299/716 (41%), Gaps = 70/716 (9%)
Query: 295 VDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDAL--------------- 339
++ + + + + K+++ + VS + RY L
Sbjct: 1 MELEEDLKGRADKNFSKMGKKSKKEKKEKKPAVSVLTMFRYAGWLDRLYMLVGTLAAIIH 60
Query: 340 GGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTI------YSLLSFG 393
G +++L+ V + + S ++ + + Y+ + G
Sbjct: 61 GVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAG 120
Query: 394 QVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDR 453
++V + +++ ++ H+I+ + +F + +G + R D+ I+
Sbjct: 121 VLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINE 180
Query: 454 NVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLW-------AIMPLLLLFYAAYLYYQSTAR 506
+ + MF Q ++TF I+ W AI P+L L + S+
Sbjct: 181 GIGDKIGMFF----QAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSF- 235
Query: 507 EVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRW 566
K L + ++ A+ E L + T+ A+ + + ++++ R +
Sbjct: 236 TDKELHAYAKAGAVAE--EVLAAIRTVIAFGGQKKELERYNNNLEEAKRL---GIKKAIT 290
Query: 567 LAIRLEIVGGLMIWLTATFAV--------VQNGSAENQEAFASTMGLLLSYALNITSLLT 618
I + G + + A++A+ V + + +L+ A ++
Sbjct: 291 ANISM---GAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIG-AFSVGQASP 346
Query: 619 AVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRY--R 676
+ A N+ A V I+ +S P G+++F+++ Y R
Sbjct: 347 NIEAFA----NARGAAYEVFKIIDNKPSIDSFSKSGHKPDN--IQGNLEFKNIHFSYPSR 400
Query: 677 PELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL 736
E+ +L GL+ + V +VG +G GKS+ + + R+ + G + IDG DI +
Sbjct: 401 KEVQ-ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINV 459
Query: 737 MDLRKILGIIPQSPVLFSGTVRFNLDPFSEH-SDADLWEALERAHLKDAIRRNSLGLDAQ 795
LR+I+G++ Q PVLF+ T+ N+ E + ++ +A++ A+ D I + D
Sbjct: 460 RYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTL 519
Query: 796 VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTML 855
V E G S GQ+Q ++++RAL+R KIL+LDEAT+A+D ++A++Q + + + T +
Sbjct: 520 VGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTI 579
Query: 856 IIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVL 915
+IAHRL+T+ + D I D G ++E +EL+ +G + K+V Q + +
Sbjct: 580 VIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKG-IYFKLVM------TQTAGNEIE 632
Query: 916 GGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLEVEDQNN 971
G K ++E +D + S + + + S+ H+ ++L ++ +
Sbjct: 633 LGNEACKSKDEIDNLDMSSK---DSGSSLIRRRSTRKSICGPHDQDRKLSTKEALD 685
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 134 bits (338), Expect = 7e-32
Identities = 61/259 (23%), Positives = 119/259 (45%), Gaps = 29/259 (11%)
Query: 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--- 98
+ F++ ++ P L ++L++ G +A+VG +G GK++++ + P++
Sbjct: 1031 VQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV 1090
Query: 99 -----DASAV----IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHD 149
+ + +R + V Q +F+ ++ +NI +G YE+ + +
Sbjct: 1091 FLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANI 1150
Query: 150 LDL---LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 206
LP T +G++G +SGGQKQR+++ARA+ + + D+ SALD + V
Sbjct: 1151 HQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVV 1210
Query: 207 ---FDRCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDLSNNGELF 260
D+ G+T +++ H LS + D I+++ G VKE GT + L ++
Sbjct: 1211 QEALDKARE----GRTCIVIA---HRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIY 1263
Query: 261 QKLMEN-AGKMEEYVEEKE 278
++ AG YV
Sbjct: 1264 FSMVSVQAGAKRSYVHHHH 1282
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 380 bits (978), Expect = e-125
Identities = 79/230 (34%), Positives = 131/230 (56%), Gaps = 4/230 (1%)
Query: 35 LTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL 94
LT+ + + N W+ + P L +IN I G L+A+ G TG GKTSL+ ++GEL
Sbjct: 2 LTTT--EVVMENVTAFWE-EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 58
Query: 95 PPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLP 154
P G +++ Q SWI T+++NI+FG +++ RY I L+ D+
Sbjct: 59 EPSE-GKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFA 117
Query: 155 GGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE 214
D +GE G+ +SGGQ+ R+S+ARAVY ++D+++ D P LD +++F+ C+
Sbjct: 118 EKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL 177
Query: 215 LSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 264
++ KTR+LVT+++ L + D+I+++HEG GTF +L N F +
Sbjct: 178 MANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKL 227
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 7e-37
Identities = 55/241 (22%), Positives = 107/241 (44%), Gaps = 18/241 (7%)
Query: 662 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 721
++ + E+V + PVL ++F I + + G TGAGK+S+L + +E
Sbjct: 3 TTTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 722 GRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN-LDPFSEHSDADL-WEALERA 779
G+I G I+ Q + GT++ N + F D ++
Sbjct: 63 GKIKHSG-RIS------------FCSQFSWIMPGTIKENII--FGVSYDEYRYRSVIKAC 107
Query: 780 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-D 838
L++ I + + + + E G S GQR +SL+RA+ + + + +LD +DV T
Sbjct: 108 QLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEK 167
Query: 839 ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 898
+ + + + + T +++ ++ + D+IL+L G Y T EL + + SK+
Sbjct: 168 EIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKL 227
Query: 899 V 899
+
Sbjct: 228 M 228
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 294 bits (756), Expect = 2e-88
Identities = 125/570 (21%), Positives = 244/570 (42%), Gaps = 36/570 (6%)
Query: 343 WVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTL--- 399
+ + ++ + + + + Y D + ++ G L
Sbjct: 14 YRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIV 73
Query: 400 ------ANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDR 453
Y +S + + + + F+ N +G++I+R D+
Sbjct: 74 RPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKD 133
Query: 454 NVAVFVNMFMGQVSQLLSTFVLIGIVS-TMSLWAIMPLLLLFYAAYLYYQSTAREVKRLD 512
+ + ++ ++ + ++L A+ Y + R++ R
Sbjct: 134 FILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVY-VFFGRLRKLTRER 192
Query: 513 SITRSPVYAQFGEALNGLSTIRAY----KAYDRMADINGKSMDKNIRYTLVNMGANRWLA 568
S + V E + G+S ++++ N + + +++T N + +
Sbjct: 193 SQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAIN 252
Query: 569 IRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAE 628
+I ++I + A A+ +GS T+G L ++ + L + RL +
Sbjct: 253 TVTDIGPIIVIGVGAYLAI--SGS--------ITVGTLAAFVGYLELLFGPLRRLVASFT 302
Query: 629 NSLNAV---ERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHG 685
+ +RV +L E + P G I + V +Y P+L
Sbjct: 303 TLTQSFASMDRV---FQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKD 359
Query: 686 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745
++ +I + V VG +G GKS+++N + R ++ G+ILIDG +I F LR +G+
Sbjct: 360 INLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGL 419
Query: 746 IPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 802
+ Q +LFS TV+ N+ P +D ++ EA + A+ D I G D +V E G
Sbjct: 420 VQQDNILFSDTVKENILLGRP--TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK 477
Query: 803 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN 862
S GQ+Q LS++R L IL+LDEAT+A+D+ ++++IQ+ + K T LI+AHRL+
Sbjct: 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLS 537
Query: 863 TIIDCDRILLLDSGRVLEYDTPEELLSNEG 892
TI D+I+++++G ++E T EL++ +G
Sbjct: 538 TITHADKIVVIENGHIVETGTHRELIAKQG 567
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 6e-33
Identities = 82/287 (28%), Positives = 133/287 (46%), Gaps = 47/287 (16%)
Query: 7 QVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLP----AISIRNGYFSWDSKAERPTLLN 62
+ + S+ R+ + + +E + N + I I + F ++ E P L +
Sbjct: 303 TLTQSFASMDRVFQLI--DEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYN-DNEAPILKD 359
Query: 63 INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----VSDASAVI-------------R 105
INL I G VA VG +G GK++LI+ L P V+ +I R
Sbjct: 360 INLSIEKGETVAFVGMSGGGKSTLIN-----LIPRFYDVTSGQILIDGHNIKDFLTGSLR 414
Query: 106 GTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDL---LPGGDVTEIG 162
+ V Q + +F+ TV++NIL G A E+ ++ + + D LP G TE+G
Sbjct: 415 NQIGLVQQDNILFSDTVKENILLGR--PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVG 472
Query: 163 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV---FDRCIRGELSGKT 219
ERGV +SGGQKQR+S+AR +N + I D+ SALD + D + +T
Sbjct: 473 ERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK----DRT 528
Query: 220 RVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDLSNNGELFQKL 263
++V H LS + D+I+++ G + E GT +L ++ L
Sbjct: 529 TLIVA---HRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHL 572
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 291 bits (747), Expect = 3e-87
Identities = 137/600 (22%), Positives = 254/600 (42%), Gaps = 56/600 (9%)
Query: 318 KQEERETGVVSFKVLSRY-KDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLK 376
E+ +FK L Y + GL V I L+ +T +S L D+
Sbjct: 2 SLHSDESNWQTFKRLWTYIRLYKAGLVVSTIALVINAAADTYMIS---LLKPLLDEGFGN 58
Query: 377 THGPLFYNTIYSL--LSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHT 434
+ + L F + L A+SY L S ++ + + + P+ FF
Sbjct: 59 AESNFLRILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQ 118
Query: 435 NPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLW-------AI 487
G +++R D ++ + V + S L+ ++ S W +
Sbjct: 119 ESTGGLLSRI---TYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNS-WQLSLVLIVV 174
Query: 488 MPLLLLFYAAYLYYQSTAREVKRLDSITR------SPVYAQFGEALNGLSTIRAY----K 537
P++ + KR I+R V + + L G + +Y
Sbjct: 175 APVVAFA---------ISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEV 225
Query: 538 AYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQE 597
R ++ + ++ A+ + + + +++L A+ ++
Sbjct: 226 ERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFL-ASVDSIRA------- 277
Query: 598 AFASTMGLLLSYALNITSLLTAVLRLASLAEN---SLNAVERVGNYIELPSEAPLVIESN 654
T G + L+ + L S+ + A + + ++L +E
Sbjct: 278 --ELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERD---NGK 332
Query: 655 RPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF 714
+G + +DV Y+ + P L +SF+IP V +VGR+G+GKS++ N
Sbjct: 333 YEAE--RVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFT 390
Query: 715 RIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN--LDPFSEHSDADL 772
R +++ G I +DG D+ + L +LR+ ++ Q+ LF+ T+ N E++ +
Sbjct: 391 RFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQI 450
Query: 773 WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 832
+A +AH + I GLD + E G + S GQRQ ++++RALLR + +L+LDEAT+A
Sbjct: 451 EQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSA 510
Query: 833 VDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 892
+D ++ IQ + E K+ T+L+IAHRL+TI D IL++D G ++E +LL+ +G
Sbjct: 511 LDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDG 570
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 143 bits (364), Expect = 5e-36
Identities = 71/281 (25%), Positives = 124/281 (44%), Gaps = 44/281 (15%)
Query: 11 ANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVG 70
+ + + + E + + +++ F++ K E+P L +++ IP G
Sbjct: 311 GMAACQTLFGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQG 369
Query: 71 SLVAIVGGTGEGKTSLISAMLGELP---------------PVSDAS-AVIRGTVAYVPQV 114
VA+VG +G GK+++ + L V D +R A V Q
Sbjct: 370 KTVALVGRSGSGKSTIAN--L--FTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQN 425
Query: 115 SWIFNATVRDNILFGSAFEPARYE-----KAIDVTSLQHD-LDLLPGGDVTEIGERGVNI 168
+FN T+ +NI + + E R + + + ++ +P G T IGE G ++
Sbjct: 426 VHLFNDTIANNIAYAAEGEYTREQIEQAARQAHA----MEFIENMPQGLDTVIGENGTSL 481
Query: 169 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV---FDRCIRGELSGKTRVLVTN 225
SGGQ+QRV++ARA+ ++ V I D+ SALD R + D + KT +++
Sbjct: 482 SGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK----NKTVLVIA- 536
Query: 226 QLHFLSQV---DRIILVHEGMVKEEGTFEDLSNNGELFQKL 263
H LS + D I++V EG + E G DL + +L
Sbjct: 537 --HRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQL 575
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 291 bits (746), Expect = 6e-87
Identities = 134/597 (22%), Positives = 257/597 (43%), Gaps = 50/597 (8%)
Query: 318 KQEERETGVVSFKVLSRY-KDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLK 376
++ + +F+ L GL V I L+ ++T +S L D K
Sbjct: 2 HNDKDLSTWQTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLS---LLKPLLDDGFGK 58
Query: 377 THGPLFYNTIYSL--LSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHT 434
T + + L + + + +SY + S + + ++ P+ FF
Sbjct: 59 TDRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDK 118
Query: 435 NPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMS----LWAIMPL 490
G +++R D ++ + + V + S L ++ S + ++
Sbjct: 119 QSTGTLLSRI---TYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLA 175
Query: 491 LLLFYAAYLYYQSTAREVKRLDSITR------SPVYAQFGEALNGLSTIRAY----KAYD 540
++ A + KR SI++ V + L G + +
Sbjct: 176 PIVSIAIRVVS-------KRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETK 228
Query: 541 RMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFA 600
R ++ K + ++ + ++ + + + +++ A+F V + +
Sbjct: 229 RFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYA-ASFPSVMD---------S 278
Query: 601 STMGLLLSYALNITSLLTAVLRLASLAEN---SLNAVERVGNYIELPSEAPLVIESNRPP 657
T G + ++ +L+ + L ++ + A + + ++ E E R
Sbjct: 279 LTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQE---KDEGKRVI 335
Query: 658 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV 717
++G ++F +V Y P L ++ IP V +VGR+G+GKS++ + + R
Sbjct: 336 D--RATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY 393
Query: 718 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN--LDPFSEHSDADLWEA 775
+++ G IL+DG D+ ++ L LR + ++ Q+ LF+ TV N E+S + EA
Sbjct: 394 DIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEA 453
Query: 776 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 835
A+ D I + GLD + E G S GQRQ ++++RALLR S IL+LDEAT+A+D
Sbjct: 454 ARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDT 513
Query: 836 RTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 892
++ IQ + E K+ T L+IAHRL+TI D I++++ G ++E T ELL+ G
Sbjct: 514 ESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHG 570
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 2e-36
Identities = 76/277 (27%), Positives = 132/277 (47%), Gaps = 36/277 (12%)
Query: 11 ANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVG 70
+ + + L +E++ + + RN F++ + E P L NINL IP G
Sbjct: 311 GMAACQTLFAILDSEQEKDEGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAG 369
Query: 71 SLVAIVGGTGEGKTSLISAMLGELP---------------PVSDAS-AVIRGTVAYVPQV 114
VA+VG +G GK+++ S L + + + + A +R VA V Q
Sbjct: 370 KTVALVGRSGSGKSTIAS--L--ITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQN 425
Query: 115 SWIFNATVRDNILFG--SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 172
+FN TV +NI + + + E+A + ++ + G T IGE GV +SGGQ
Sbjct: 426 VHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQ 485
Query: 173 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV---FDRCIRGELSGKTRVLVTNQLHF 229
+QR+++ARA+ +S + I D+ SALD R + D + +T +++ H
Sbjct: 486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK----NRTSLVIA---HR 538
Query: 230 LSQV---DRIILVHEGMVKEEGTFEDLSNNGELFQKL 263
LS + D I++V +G++ E GT +L ++ +L
Sbjct: 539 LSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQL 575
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 260 bits (666), Expect = 1e-75
Identities = 129/527 (24%), Positives = 233/527 (44%), Gaps = 55/527 (10%)
Query: 389 LLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDL 448
+++ + + + + +S L + +L + + +I R D+
Sbjct: 71 IVALIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDV 130
Query: 449 GDIDRNVAVFVNMFMGQVSQLLSTFVLIG-------IVSTMSL--WAIMPLL-----LLF 494
+ V M + V + + + +G I +S ++P + L
Sbjct: 131 ----TQLQNLVMMLLRIV--VRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLT 184
Query: 495 YAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNI 554
++ ++ + R E L G +R +A+ R N N
Sbjct: 185 KKGNPLFRKIQESTDEVNRVVR--------ENLLG---VRVVRAFRREEYENENFRKANE 233
Query: 555 RYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGL-----LLSY 609
+ A + L + + I AV+ G + M + +Y
Sbjct: 234 SLRRSIISAFSLIVFALPLF--IFIVNMGMIAVLWFGG---VLVRNNQMEIGSIMAYTNY 288
Query: 610 ALNIT---SLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSI 666
+ I ++ +L A S +RV E+ +E P + E++ GS+
Sbjct: 289 LMQIMFSLMMIGNILNFIVRASASA---KRVL---EVLNEKPAIEEADNALALPNVEGSV 342
Query: 667 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 726
FE+V RY PVL G++F++ P V ++G TG+GKS+++N + R+++ ERGR+ +
Sbjct: 343 SFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEV 402
Query: 727 DGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLKD 783
D D+ L DLR + +PQ VLFSGT++ NL + +D ++ EA + A + D
Sbjct: 403 DELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRE--DATDDEIVEAAKIAQIHD 460
Query: 784 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 843
I G D++V G NFS GQ+Q LS++RAL+++ K+L+LD+ T++VD T+ I
Sbjct: 461 FIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILD 520
Query: 844 TIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 890
++ K CT II ++ T + D+IL+L G+V + T +ELL +
Sbjct: 521 GLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEH 567
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 2e-37
Identities = 74/278 (26%), Positives = 136/278 (48%), Gaps = 24/278 (8%)
Query: 1 MFVVAWQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGL--PAISIRNGYFSWDSKAERP 58
+ +V A+ S KR+ E L + I + L ++S N F + + P
Sbjct: 302 ILN---FIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRY-FENTDP 357
Query: 59 TLLNINLDIPVGSLVAIVGGTGEGKTSLIS-------AMLGEL----PPVSDAS-AVIRG 106
L +N + GSLVA++G TG GK++L++ G + V +RG
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRG 417
Query: 107 TVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSL-QHD--LDLLPGGDVTEIGE 163
++ VPQ + +F+ T+++N+ +G E A ++ ++ + Q + LP G + +
Sbjct: 418 HISAVPQETVLFSGTIKENLKWGR--EDATDDEIVEAAKIAQIHDFIISLPEGYDSRVER 475
Query: 164 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLV 223
G N SGGQKQR+S+ARA+ V I DD S++D +++ ++ G T ++
Sbjct: 476 GGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRIL-DGLKRYTKGCTTFII 534
Query: 224 TNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQ 261
T ++ D+I+++HEG V GT ++L + + ++
Sbjct: 535 TQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKPYR 572
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 259 bits (663), Expect = 3e-75
Identities = 149/591 (25%), Positives = 258/591 (43%), Gaps = 65/591 (10%)
Query: 329 FKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYS 388
L + + ++++ + ++ L V S + D + L +
Sbjct: 29 LGYLRPHT------FTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLI 82
Query: 389 LLSF--GQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAK 446
L + L+ ++ S RL + + R P+ FF P G II+R
Sbjct: 83 LGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRV-- 140
Query: 447 DLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTM-------SLWAIMPLLLLFYAAYL 499
+ D+D N+ + + Q L G V M SL + + L +
Sbjct: 141 -INDVD-NINNVLGNSIIQF--FSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQI 196
Query: 500 YYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAY----KAYDRMADINGK---SMDK 552
T + + E ++GL+ I+ + K ++ +N K
Sbjct: 197 VSSQTRKYFYEN-QRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTK 255
Query: 553 NIRYT-----LVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLL- 606
++ L+NM N A+ + GG + T+G +
Sbjct: 256 AQIFSGVLPPLMNMVNNLGFAL-ISGFGGWL---------ALKDII--------TVGTIA 297
Query: 607 --LSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSG 664
+ Y+ T L + ++ + +L + ER+ ++L E + + G
Sbjct: 298 TFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKD---DPDAVELR-EVRG 353
Query: 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 724
I+F++V Y + PVL ++F I P KV +VG TG+GK++++N L R +++RG+I
Sbjct: 354 EIEFKNVWFSYDKK-KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQI 412
Query: 725 LIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHL 781
L+DG DI K LR +GI+ Q +LFS TV+ NL +P +D ++ EA + H
Sbjct: 413 LVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP--GATDEEIKEAAKLTHS 470
Query: 782 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 841
I+ G + +++ GE+ S GQRQLL+++RA L KIL+LDEAT+ VD +T+ I
Sbjct: 471 DHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSI 530
Query: 842 QKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 892
Q + + + T +IIAHRLNTI + D I++L G ++E +EL+ G
Sbjct: 531 QAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRG 581
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 3e-22
Identities = 69/270 (25%), Positives = 132/270 (48%), Gaps = 35/270 (12%)
Query: 7 QVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLP-AISIRNGYFSWDSKAERPTLLNINL 65
+ A S +R+ E L EE+ P+ + I +N +FS+D ++P L +I
Sbjct: 319 MIQMALASAERIFEILDLEEEKDDPDAVELREVRGEIEFKNVWFSYD--KKKPVLKDITF 376
Query: 66 DIPVGSLVAIVGGTGEGKTSLISAML-------GELP----PVSDAS-AVIRGTVAYVPQ 113
I G VA+VG TG GKT++++ ++ G++ + + +R ++ V Q
Sbjct: 377 HIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQ 436
Query: 114 VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLD----LLPGGDVTEIGERGVNIS 169
+ +F+ TV++N+ +G+ A E+ + L H D LP G T + + G ++S
Sbjct: 437 DTILFSTTVKENLKYGN--PGATDEEIKEAAKLTH-SDHFIKHLPEGYETVLTDNGEDLS 493
Query: 170 GGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV---FDRCIRGELSGKTRVLVTNQ 226
GQ+Q +++ RA +N + I D+ S +D + + + + GKT +++
Sbjct: 494 QGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKL----MEGKTSIIIA-- 547
Query: 227 LHFLSQV---DRIILVHEGMVKEEGTFEDL 253
H L+ + D II++ +G + E G ++L
Sbjct: 548 -HRLNTIKNADLIIVLRDGEIVEMGKHDEL 576
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 244 bits (624), Expect = 3e-73
Identities = 85/266 (31%), Positives = 142/266 (53%), Gaps = 9/266 (3%)
Query: 630 SLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFT 689
+E + +L E V + P G I+FE+V Y L +SFT
Sbjct: 21 MFIDMENM---FDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADG-RETLQDVSFT 76
Query: 690 IPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQS 749
+ P + +VG +GAGKS++L LFR ++ G I IDG DI++ LR +G++PQ
Sbjct: 77 VMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQD 136
Query: 750 PVLFSGTVRFNL---DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVG 806
VLF+ T+ N+ + ++ A + A + DAI G QV E G S G
Sbjct: 137 TVLFNDTIADNIRYGRV--TAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGG 194
Query: 807 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID 866
++Q ++++R +L+ I++LDEAT+A+D + IQ ++ + + T +++AHRL+T+++
Sbjct: 195 EKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN 254
Query: 867 CDRILLLDSGRVLEYDTPEELLSNEG 892
D+IL++ G ++E E LLS G
Sbjct: 255 ADQILVIKDGCIVERGRHEALLSRGG 280
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 6e-37
Identities = 74/271 (27%), Positives = 130/271 (47%), Gaps = 28/271 (10%)
Query: 13 VSLKRMEEFLLAEEKIL-LPN-PPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVG 70
+ ++ M + L E ++ LP PL I N +FS+ R TL +++ + G
Sbjct: 23 IDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPG 80
Query: 71 SLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------------RGTVAYVPQVSWI 117
+A+VG +G GK++++ +L +S I R + VPQ + +
Sbjct: 81 QTLALVGPSGAGKSTILR-LLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVL 139
Query: 118 FNATVRDNILFG--SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 175
FN T+ DNI +G +A E A + + P G T++GERG+ +SGG+KQR
Sbjct: 140 FNDTIADNIRYGRVTAGN-DEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQR 198
Query: 176 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV-- 233
V++AR + + + D+ SALD R + + + +T ++V H LS V
Sbjct: 199 VAIARTILKAPGIILLDEATSALDTSNERAI-QASLAKVCANRTTIVVA---HRLSTVVN 254
Query: 234 -DRIILVHEGMVKEEGTFEDLSNNGELFQKL 263
D+I+++ +G + E G E L + G ++ +
Sbjct: 255 ADQILVIKDGCIVERGRHEALLSRGGVYADM 285
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 233 bits (597), Expect = 3e-70
Identities = 82/240 (34%), Positives = 141/240 (58%), Gaps = 5/240 (2%)
Query: 664 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 723
I F ++ RY+P+ P +L ++ +I + +GIVGR+G+GKS++ + R E G+
Sbjct: 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 724 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAH 780
+LIDG D+A LR+ +G++ Q VL + ++ N+ +P S + A + A
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAAKLAG 123
Query: 781 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 840
D I G + V E G S GQRQ ++++RAL+ KIL+ DEAT+A+D ++ +
Sbjct: 124 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 183
Query: 841 IQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 900
I + + + K T++IIAHRL+T+ + DRI++++ G+++E +ELLS S +S + Q
Sbjct: 184 IMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 243
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 2e-34
Identities = 71/234 (30%), Positives = 114/234 (48%), Gaps = 31/234 (13%)
Query: 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-- 98
I+ RN F + + L NINL I G ++ IVG +G GK++L + P +
Sbjct: 7 DITFRNIRFRYKPDSP-VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 99 ------DASAV----IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ- 147
D + +R V V Q + + N ++ DNI + EK I L
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLAN--PGMSVEKVIYAAKLAG 123
Query: 148 -HD-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 205
HD + L G T +GE+G +SGGQ+QR+++ARA+ +N + IFD+ SALD
Sbjct: 124 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 183
Query: 206 V---FDRCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDL 253
+ + + G+T +++ H LS V DRII++ +G + E+G ++L
Sbjct: 184 IMRNMHKICK----GRTVIIIA---HRLSTVKNADRIIVMEKGKIVEQGKHKEL 230
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 228 bits (585), Expect = 9e-69
Identities = 76/229 (33%), Positives = 124/229 (54%), Gaps = 3/229 (1%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
+ V Y + +L +SF P+ + G +G GKS++ + L R + G I
Sbjct: 2 LSARHVDFAY-DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLD--PFSEHSDADLWEALERAHLKD 783
IDG I L + R +G + Q + +GT+R NL +++D DLW+ L+ A +
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARS 120
Query: 784 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 843
+ L+ +V E G S GQRQ L+++RA LR KIL+LDEATA++D +++++QK
Sbjct: 121 FVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180
Query: 844 TIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 892
+ K T L+IAHRL+TI+D D+I ++ G++ EL++
Sbjct: 181 ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHP 229
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 137 bits (349), Expect = 1e-36
Identities = 63/242 (26%), Positives = 119/242 (49%), Gaps = 29/242 (11%)
Query: 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML-------GEL 94
+S R+ F++D L +I+ + S++A G +G GK+++ S + GE+
Sbjct: 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 95 ----PPVSDAS-AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE--KAIDVTSLQ 147
P+ + S R + +V Q S I T+R+N+ +G + + + +D+ +
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 148 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV- 206
++ +P TE+GERGV ISGGQ+QR+++ARA N + + D+ ++LD+ V
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 207 --FDRCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDLSNNGELFQ 261
D ++ G+T +++ H LS + D+I + +G + G +L L+
Sbjct: 180 KALDSLMK----GRTTLVIA---HRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYA 232
Query: 262 KL 263
K
Sbjct: 233 KY 234
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 227 bits (582), Expect = 5e-68
Identities = 81/241 (33%), Positives = 140/241 (58%), Gaps = 8/241 (3%)
Query: 664 GSIKFEDVVLRYRPELP-PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 722
+I+F DV Y + L ++F IP +VG TG+GKS++ L+R + E G
Sbjct: 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE-G 74
Query: 723 RILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERA 779
I I G ++ K+ +R I+GI+PQ +LF+ T+++N+ + +D ++ +A + A
Sbjct: 75 DIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKL--DATDEEVIKATKSA 132
Query: 780 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 839
L D I D V G S G+RQ ++++R LL+ KI++ DEAT+++D +T+
Sbjct: 133 QLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEY 192
Query: 840 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 899
L QK + + K+ T++IIAHRL+TI + I+LL+ G+++E T ++LL G +++M
Sbjct: 193 LFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNG-EYAEMW 251
Query: 900 Q 900
Sbjct: 252 N 252
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 3e-36
Identities = 67/242 (27%), Positives = 119/242 (49%), Gaps = 27/242 (11%)
Query: 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML------GE- 93
I + FS+ + TL +IN IP G+ A+VG TG GK+++ + G+
Sbjct: 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDI 76
Query: 94 ------LPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 147
+ + S IR + VPQ + +FN T++ NIL+G A E+ I T
Sbjct: 77 KIGGKNVNKYNRNS--IRSIIGIVPQDTILFNETIKYNILYGK--LDATDEEVIKATKSA 132
Query: 148 HDLDL---LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR 204
D LP T +G +G+ +SGG++QR+++AR + + + IFD+ S+LD+
Sbjct: 133 QLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEY 192
Query: 205 QVFDRCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDLSNNGELFQ 261
+ + +T +++ H LS + + IIL+++G + E+GT +DL +
Sbjct: 193 LF-QKAVEDLRKNRTLIIIA---HRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYA 248
Query: 262 KL 263
++
Sbjct: 249 EM 250
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 195 bits (498), Expect = 2e-56
Identities = 75/244 (30%), Positives = 124/244 (50%), Gaps = 8/244 (3%)
Query: 663 SGSIKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE 720
G +KF+DV Y P + VL GL+FT+ P +VG G+GKS++ L + +
Sbjct: 14 KGLVKFQDVSFAYPNHPNVQ-VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 721 RGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLD--PFSEHSDADLWEALER 778
G++L+DG + ++ L + + Q P+LF + R N+ + ++
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 779 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 838
+ D I G D +V E G S GQRQ ++L+RAL+R+ ++L+LD AT+A+D
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 839 ALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFS 896
+Q+ + E E+ S T+L+I +L+ IL L G V E T +L+ G +
Sbjct: 193 LRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGG-CYR 251
Query: 897 KMVQ 900
MV+
Sbjct: 252 SMVE 255
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 2e-34
Identities = 67/259 (25%), Positives = 113/259 (43%), Gaps = 33/259 (12%)
Query: 34 PLTSGLP------AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI 87
PL+ L + ++ F++ + L + + G + A+VG G GK+++
Sbjct: 3 PLSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVA 62
Query: 88 SAML-------GEL----PPVSDAS-AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPA 135
+ + G++ P+ + VA V Q +F + R+NI +G
Sbjct: 63 ALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLT-RTP 121
Query: 136 RYEKAIDVTSLQ--HD-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFD 192
E+ V HD + P G TE+GE G +SGGQ+Q V++ARA+ + I D
Sbjct: 122 TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILD 181
Query: 193 DPLSALDAHVGRQV---FDRCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKE 246
+ SALDA +V E + +T +L+T LS I+ + EG V E
Sbjct: 182 NATSALDAGNQLRVQRLLYESP--EWASRTVLLIT---QQLSLAERAHHILFLKEGSVCE 236
Query: 247 EGTFEDLSNNGELFQKLME 265
+GT L G ++ ++E
Sbjct: 237 QGTHLQLMERGGCYRSMVE 255
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 8e-32
Identities = 50/246 (20%), Positives = 102/246 (41%), Gaps = 33/246 (13%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
I+ + + + + +L +S+ I DK + G GAGK+++LN L G +
Sbjct: 22 IQLDQIGRMKQGK--TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVN 79
Query: 726 IDGFDIAKFG--LMDLRKILGIIPQS---PVLFSGTVR--------FNLDPFSEHSDADL 772
+ G K G +R+ +G + S V ++ + + D
Sbjct: 80 LFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIR 139
Query: 773 WEA---LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEA 829
EA L+ + ++ L S G++Q + ++RAL+ + ++L+LDE
Sbjct: 140 NEAHQLLKLVGMSAKAQQYIGYL-----------STGEKQRVMIARALMGQPQVLILDEP 188
Query: 830 TAAVDVRTDALIQKTIRE---EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPE 885
A +D + + + + M+ + H + I +ILLL G+ ++ E
Sbjct: 189 AAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVE 248
Query: 886 ELLSNE 891
++L++E
Sbjct: 249 DILTSE 254
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 95.0 bits (237), Expect = 1e-21
Identities = 44/240 (18%), Positives = 89/240 (37%), Gaps = 35/240 (14%)
Query: 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 99
I + + L I+ I G + G G GKT+L++ + P S
Sbjct: 20 MLIQLDQIGRMKQ---GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSG 76
Query: 100 ASAV--------------IRGTVAYVPQ---VSWIFNATVRDNILFGSAFEPARYEKAID 142
+ +R + +V + V D ++ G+ Y+
Sbjct: 77 TVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQD--- 133
Query: 143 VTSLQHD-----LDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLS 196
+ + L L+ ++ ++ + +S G+KQRV +ARA+ V I D+P +
Sbjct: 134 IDDEIRNEAHQLLKLV---GMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAA 190
Query: 197 ALDAHVGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 253
LD + + + VT+ + ++ +I+L+ +G ++G ED+
Sbjct: 191 GLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDI 250
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 6e-30
Identities = 57/219 (26%), Positives = 103/219 (47%), Gaps = 28/219 (12%)
Query: 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 99
A+S+ N F + ++ +N D+ G ++A++G G GK++L+ +LG P+
Sbjct: 3 KALSVENLGFYYQAE--NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQ- 59
Query: 100 ASAVIRGTVAYVPQ-VSWIFNATVRDNILFG-----SAFEPARYEKAIDVTSLQHDLDLL 153
+ ++ +VPQ S F +V D +L G + F K+ D LD L
Sbjct: 60 GKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTF---AKPKSHDYQVAMQALDYL 116
Query: 154 PGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 212
++T + +R +SGGQ+Q + +ARA+ S + + D+P SALD V +
Sbjct: 117 ---NLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLS--LL 171
Query: 213 GELS---GKTRVLVTNQLHFLSQV----DRIILVHEGMV 244
+L+ T V T H +QV ++ +L+++
Sbjct: 172 IDLAQSQNMTVVFTT---HQPNQVVAIANKTLLLNKQNF 207
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 2e-29
Identities = 51/242 (21%), Positives = 117/242 (48%), Gaps = 41/242 (16%)
Query: 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 724
++ E++ Y+ E + L+F + D + ++G+ G GKS++L+ L I +G+I
Sbjct: 4 ALSVENLGFYYQAE-NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 725 LIDGFDIAKFGLMDLRKILGIIPQSPVL-FSGTV-------RF-NLDPFSEHSDADL--- 772
++ + +G +PQ F+ +V R +++ F++ D
Sbjct: 63 -------------EVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVA 109
Query: 773 WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 832
+AL+ +L +R + + S GQRQL+ ++RA+ K+++LDE T+A
Sbjct: 110 MQALDYLNLTHLAKR-------EFTS----LSGGQRQLILIARAIASECKLILLDEPTSA 158
Query: 833 VDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889
+D+ ++ + + + ++ T++ H+ N ++ ++ LLL+ + ++ +L+
Sbjct: 159 LDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLN-KQNFKFGETRNILT 217
Query: 890 NE 891
+E
Sbjct: 218 SE 219
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 1e-29
Identities = 67/244 (27%), Positives = 118/244 (48%), Gaps = 34/244 (13%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR----IVELER 721
+K E++ Y + L G++ I + I+G G GKS TLF+ I++
Sbjct: 8 LKVEELNYNY-SDGTHALKGINMNIKRGEVTAILGGNGVGKS----TLFQNFNGILKPSS 62
Query: 722 GRILIDGFDIA--KFGLMDLRKILGIIPQSPV--LFSGTVR----F---NLDPFSEHSDA 770
GRIL D I + G+M LR+ +GI+ Q P LFS +V F N+ E
Sbjct: 63 GRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMK-LPED--- 118
Query: 771 DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 830
E +R +A++R G++ + S GQ++ ++++ L+ K+L+LDE T
Sbjct: 119 ---EIRKRV--DNALKR--TGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPT 171
Query: 831 AAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 887
A +D + I K + E + T++I H ++ + CD + ++ GRV+ P+E+
Sbjct: 172 AGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 231
Query: 888 LSNE 891
+ +
Sbjct: 232 FAEK 235
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 98.4 bits (246), Expect = 9e-23
Identities = 60/283 (21%), Positives = 110/283 (38%), Gaps = 60/283 (21%)
Query: 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS- 98
+ + +++ L IN++I G + AI+GG G GK++L G L P S
Sbjct: 6 YILKVEELNYNYS--DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSG 63
Query: 99 -------------DASAVIRGTVAYV---P--QVSWIFNATVRDNILFG------SAFE- 133
+R ++ V P Q +F+A+V ++ FG E
Sbjct: 64 RILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQ---LFSASVYQDVSFGAVNMKLPEDEI 120
Query: 134 PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 193
R + A+ T ++H D +S GQK+RV++A + V I D+
Sbjct: 121 RKRVDNALKRTGIEHLKDKPT-----------HCLSFGQKKRVAIAGVLVMEPKVLILDE 169
Query: 194 PLSALDAHVGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGT- 249
P + LD ++ ++ E G T ++ T+ + + D + ++ EG V +G
Sbjct: 170 PTAGLDPMGVSEIMKLLVEMQKE-LGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNP 228
Query: 250 ---FED---LSNNG-------ELFQKLMENAGKMEEYVEEKED 279
F + + L + L E G + + ++E
Sbjct: 229 KEVFAEKEVIRKVNLRLPRIGHLMEILKEKDGFVFDELDEGHH 271
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 9e-29
Identities = 53/244 (21%), Positives = 103/244 (42%), Gaps = 35/244 (14%)
Query: 665 SIKFEDVVLRYRPELP---PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR----IV 717
I+ +V + P L +S I + + + G TG+GKS TL + ++
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKS----TLLQIVAGLI 57
Query: 718 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPV--LFSGTVR----F---NLDPFSEHS 768
E G +L DG ++R+ +GI Q P F+ V F N P
Sbjct: 58 EPTSGDVLYDGERKK---GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYP-DR-- 111
Query: 769 DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 828
+ + K A+ L D+ S G+++ ++++ ++ IL+LDE
Sbjct: 112 -----DPVPLV--KKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDE 164
Query: 829 ATAAVDVRTDALIQKTIRE-EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 886
+D + + + + + T+++I+H + T+I+ DR+++L+ G+ + T E
Sbjct: 165 PLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRME 224
Query: 887 LLSN 890
L
Sbjct: 225 FLEK 228
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 9e-25
Identities = 55/246 (22%), Positives = 97/246 (39%), Gaps = 43/246 (17%)
Query: 41 AISIRNGYFSWD--SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS 98
I + N + + E+ L N++L I G + + G TG GK++L+ + G + P S
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 99 DASAV---------IRGTVAYV---P--QVSWIFNATVRDNILFG------SAFEPARYE 138
IR + P Q F V D + F +
Sbjct: 62 GDVLYDGERKKGYEIRRNIGIAFQYPEDQ---FFAERVFDEVAFAVKNFYPDRDPVPLVK 118
Query: 139 KAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSA 197
KA++ L D +R +SGG+K+RV++A + D+ I D+PL
Sbjct: 119 KAMEFVGL----------DFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVG 168
Query: 198 LDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDL 253
LD + + + GKT +L++ H + V DR++++ +G +GT +
Sbjct: 169 LDREGKTDLLRIVEKWKTLGKTVILIS---HDIETVINHVDRVVVLEKGKKVFDGTRMEF 225
Query: 254 SNNGEL 259
+
Sbjct: 226 LEKYDP 231
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 4e-28
Identities = 55/256 (21%), Positives = 119/256 (46%), Gaps = 28/256 (10%)
Query: 651 IESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKS--- 707
+ S++ G++ +D+ R + +L G+SF I + G++G GAGK+
Sbjct: 1 MGSDKIHHHHHHMGAVVVKDLRKRIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTL 58
Query: 708 SMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSE 766
+++TL + G + + G ++ + ++RK++ +P+ + L
Sbjct: 59 RIISTLIKPSS---GIVTVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFV-- 112
Query: 767 HSDADLWEALERAHLKDAIRR--NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 824
A + A + +++ + R GL ++ + +S G + L ++RAL+ ++
Sbjct: 113 ---AGFY-ASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLA 168
Query: 825 VLDEATAAVDVRTDALIQKTIREEFKS-CTMLIIAHRLNTIID-----CDRILLLDSGRV 878
+LDE T+ +DV ++K +++ + T+L+ +H + CDRI L+ +G +
Sbjct: 169 ILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSH----NMLEVEFLCDRIALIHNGTI 224
Query: 879 LEYDTPEELLSNEGSS 894
+E T EEL +
Sbjct: 225 VETGTVEELKERYKAQ 240
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 83.7 bits (208), Expect = 5e-18
Identities = 53/240 (22%), Positives = 97/240 (40%), Gaps = 44/240 (18%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDASAVIRGTVAY 110
I+ +I G + ++G G GKT+ + + + P V + +R ++Y
Sbjct: 33 GISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISY 92
Query: 111 VPQVSWIF-NATVRDNILF-------GSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 162
+P+ + + N + + F S+ E+A ++ L +
Sbjct: 93 LPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVS------- 145
Query: 163 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTR 220
S G +++ +ARA+ N + I D+P S LD R+V + E G T
Sbjct: 146 ----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE--GLT- 198
Query: 221 VLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDL---SNNGELFQKLMENAGKMEEY 273
+LV++ H + +V DRI L+H G + E GT E+L + + E E +
Sbjct: 199 ILVSS--HNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEVVKCSENF 256
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 4e-27
Identities = 48/222 (21%), Positives = 93/222 (41%), Gaps = 31/222 (13%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
++ D+ + Y VL ++ TI + V G G GK+++L T+ ++ +G I+
Sbjct: 11 LEIRDLSVGYDKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 67
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSE-----HSDADLWEALERA 779
+G I K ++ + +P+ ++ +V L + + ++ +ALE
Sbjct: 68 YNGVPITK-----VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV 122
Query: 780 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 839
+ D + LG S G + + L+ LL ++I VLD+ A+D +
Sbjct: 123 EVLD--LKKKLG----------ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKH 170
Query: 840 LIQKTIREEFKSCTMLIIA--HRLNTIIDCDRILLLDSGRVL 879
+ K+I E K ++II+ L+ CD L
Sbjct: 171 KVLKSILEILKEKGIVIISSREELSY---CDVNENLHKYSTK 209
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 83.7 bits (208), Expect = 3e-18
Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 31/222 (13%)
Query: 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 99
+ IR+ +D L I + I G++V G G GKT+L+ + L P+
Sbjct: 9 SKLEIRDLSVGYDKPV----LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKG 64
Query: 100 ASAV-------IRGTVAYVPQVSWIF-NATVRDNILF-----GSAFEPARYEKAIDVTSL 146
++G + ++P+ + +V D + G A++ +
Sbjct: 65 EIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEV 124
Query: 147 QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 206
++G +S G +RV +A + N+++++ DDP+ A+D +V
Sbjct: 125 LDLKK--------KLG----ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKV 172
Query: 207 FDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEG 248
+ ++ + LS D +H+ K +
Sbjct: 173 LKSILEILKEKGIVIISSR--EELSYCDVNENLHKYSTKIDK 212
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 8e-27
Identities = 47/229 (20%), Positives = 89/229 (38%), Gaps = 36/229 (15%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 740
L LS + + + +VG GAGKS++L + + +G I G + + L
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATKLA 72
Query: 741 KILGIIPQSPVL-FSGTVR----FNLDPFSEHSDADL-WEALERAHLKDAIRRNSLGLDA 794
+ Q F+ V + + +L + L D + R++ L
Sbjct: 73 LHRAYLSQQQTPPFATPVWHYLTLHQHD---KTRTELLNDVAGALALDDKLGRSTNQL-- 127
Query: 795 QVSEAGENFSVGQRQLLSLSRALL-------RRSKILVLDEATAAVDVR----TDALIQK 843
S G+ Q + L+ +L ++L+LDE ++DV D ++
Sbjct: 128 ---------SGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA 178
Query: 844 TIREEFKSCTMLIIAHRLN-TIIDCDRILLLDSGRVLEYDTPEELLSNE 891
++ +++ +H LN T+ R LL G++L EE+L+
Sbjct: 179 LSQQ---GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP 224
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 88.0 bits (219), Expect = 2e-19
Identities = 44/219 (20%), Positives = 77/219 (35%), Gaps = 37/219 (16%)
Query: 55 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP----------PVSDASAVI 104
AE L ++ ++ G ++ +VG G GK++L++ M G P+ SA
Sbjct: 11 AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATK 70
Query: 105 RG-TVAYVPQVSWI-FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 162
AY+ Q F V + +++K L L + +
Sbjct: 71 LALHRAYLSQQQTPPFATPVWHYLTLH------QHDKT-RTELLNDVAGAL---ALDDKL 120
Query: 163 ERGVN-ISGGQKQRVSMARA-------VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE 214
R N +SGG+ QRV +A + + D+P+++LD +
Sbjct: 121 GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALS 180
Query: 215 LSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGT 249
G V+ H L+ R L+ G + G
Sbjct: 181 QQGLAIVMS---SHDLNHTLRHAHRAWLLKGGKMLASGR 216
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 2e-24
Identities = 56/229 (24%), Positives = 92/229 (40%), Gaps = 28/229 (12%)
Query: 42 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP----- 95
I ++N + K ER +L NINL++ G V I+G G GKT+L+ A+ G LP
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYSGNI 60
Query: 96 -----PVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDL 150
V IR +P+ ++ TV D + + + +++ L
Sbjct: 61 FINGMEVRKIRNYIRY-STNLPE-AYEIGVTVNDIVYLYEELKGLDRDLFLEMLKA---L 115
Query: 151 DLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 209
L EI R + +S GQ V + A+ S ++ D+P +DA R V R
Sbjct: 116 KLGE-----EILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDA-ARRHVISR 169
Query: 210 CIRGELSGKTRVLVT-NQLHFLSQVDRIILV-HEGMVKEEGTFEDLSNN 256
I+ E GK +LVT + ++ + +L +
Sbjct: 170 YIK-EY-GKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 97.0 bits (242), Expect = 2e-22
Identities = 50/235 (21%), Positives = 96/235 (40%), Gaps = 28/235 (11%)
Query: 666 IKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 723
I+ ++V + + L ++ + +KV I+G G+GK+++L + ++ G
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYS-GN 59
Query: 724 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG--TVRFNLDPFSE---HSDADLWEALER 778
I I+G ++ K +R + P + TV + + E E L+
Sbjct: 60 IFINGMEVRK-----IRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKA 114
Query: 779 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 838
L + I L ++ + S GQ L+ S AL + +I+ LDE VD
Sbjct: 115 LKLGEEI------LRRKLYK----LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARR 164
Query: 839 ALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLE-YDTPEELLSNE 891
+I + I+E K +++ H L+ + + G L+ + ELL +
Sbjct: 165 HVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESS 217
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 4e-23
Identities = 71/275 (25%), Positives = 122/275 (44%), Gaps = 39/275 (14%)
Query: 645 SEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPV--LHGLSFTIPPSDKVGIVGRT 702
+ IK ++ + + L+ +S +P G++G +
Sbjct: 4 HHHHHHHHHSSGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGAS 63
Query: 703 GAGKSSMLNTLFRIV-ELER---GRILIDGFDIAKF---GLMDLRKILGIIPQSPVLFSG 755
GAGKS TL R V LER G +L+DG ++ L R+ +G+I Q L S
Sbjct: 64 GAGKS----TLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSS 119
Query: 756 -TVRFNLDPFSEHSDADLWEALERAHL-KDAIRR--NSL----GLDAQVSEAGENFSVGQ 807
TV N+ LE + KD ++R L GL + N S GQ
Sbjct: 120 RTVFGNVA-----------LPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQ 168
Query: 808 RQLLSLSRALLRRSKILVLDEATAAVDVRTD----ALIQKTIREEFKSCTMLIIAHRLNT 863
+Q ++++RAL K+L+ D+AT+A+D T L++ I T+L+I H ++
Sbjct: 169 KQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD-INRRLG-LTILLITHEMDV 226
Query: 864 IID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSK 897
+ CD + ++ +G ++E DT E+ S+ + ++
Sbjct: 227 VKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQ 261
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 1e-13
Identities = 61/251 (24%), Positives = 108/251 (43%), Gaps = 41/251 (16%)
Query: 31 PNPPLTSGLPAISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISA 89
I + N + L N++L +P G + ++G +G GK++LI
Sbjct: 14 SGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIR- 72
Query: 90 MLGELPPVSDASAVIRGT----------VAYVPQVSWIF-------NATVRDNILFGSAF 132
+ L ++ S ++ G Q+ IF + TV N+
Sbjct: 73 CVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVAL--PL 130
Query: 133 EPARYEKA-ID--VTSLQHDLDLLPGGDVTEIGERG----VNISGGQKQRVSMARAVYSN 185
E K + VT L L L+ +G++ N+SGGQKQRV++ARA+ SN
Sbjct: 131 ELDNTPKDEVKRRVTEL---LSLV------GLGDKHDSYPSNLSGGQKQRVAIARALASN 181
Query: 186 SDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEG 242
V + D SALD R + + + I L G T +L+T+++ + ++ D + ++ G
Sbjct: 182 PKVLLCDQATSALDPATTRSILELLKDINRRL-GLTILLITHEMDVVKRICDCVAVISNG 240
Query: 243 MVKEEGTFEDL 253
+ E+ T ++
Sbjct: 241 ELIEQDTVSEV 251
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 1e-22
Identities = 58/244 (23%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 30 LPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA 89
L + + S L +I G ++ IVG G GKT+ +
Sbjct: 346 LSERVDVERETLVEYPRLVKDYGSFK----LEVEPGEIRKGEVIGIVGPNGIGKTTFVKM 401
Query: 90 MLGELPPVSDASAVIRGTVAYVPQ-VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 148
+ G P TVAY PQ + + TV + L T L
Sbjct: 402 LAGVEEPTEG-KVEWDLTVAYKPQYIKAEYEGTVYE--LLSKIDSSK-LNSNFYKTELLK 457
Query: 149 DLDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 207
L + ++ +R V ++SGG+ QRV++A + ++D+++ D+P + LD V
Sbjct: 458 PLGI------IDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVS 511
Query: 208 DRCIR--GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNNGELFQKLM 264
R IR E + KT ++V + + + V DR+I V EG G E + +
Sbjct: 512 -RAIRHLMEKNEKTALVVEHDVLMIDYVSDRLI-VFEGEPGRHGRALPPMGMREGMNRFL 569
Query: 265 ENAG 268
+ G
Sbjct: 570 ASVG 573
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 2e-20
Identities = 47/226 (20%), Positives = 87/226 (38%), Gaps = 40/226 (17%)
Query: 669 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL-------FRIVELER 721
ED V RY VL+ + VGIVG G GK++ + L
Sbjct: 95 EDCVHRYGVNAF-VLYR-LPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDS- 151
Query: 722 GRILIDGFDIAKFGLMDLRKILG----IIPQS------PVLFSGTVRFNLDPFSEHSDAD 771
+I F + ++ + + P G VR L E +
Sbjct: 152 WDNVIRAFRGNEL-QNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFE 210
Query: 772 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 831
E ++ L++ LD ++ + S G+ Q ++++ ALLR++ DE ++
Sbjct: 211 --EVVKELELENV-------LDRELHQ----LSGGELQRVAIAAALLRKAHFYFFDEPSS 257
Query: 832 AVDVRTDALIQKTIREEFKS--CTMLIIAHRLNTIID--CDRILLL 873
+D+R + + IR + +L++ H L ++D D I ++
Sbjct: 258 YLDIRQRLKVARVIR-RLANEGKAVLVVEHDLA-VLDYLSDVIHVV 301
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 90.8 bits (226), Expect = 7e-19
Identities = 48/217 (22%), Positives = 85/217 (39%), Gaps = 32/217 (14%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 741
L I + +GIVG G GK++ + L + E G++ D
Sbjct: 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL------------T 418
Query: 742 ILGIIPQSPVLFSGTVR---FNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSE 798
+ + GTV +D +S+ E L+ + D RN V +
Sbjct: 419 VAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRN-------VED 471
Query: 799 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKSCTMLI 856
S G+ Q ++++ LLR + I +LDE +A +DV + + IR E T L+
Sbjct: 472 ----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV 527
Query: 857 IAHRLNTIID--CDRILLLDSGRVLEYDTPEELLSNE 891
+ H + +ID DR+++ + G + +
Sbjct: 528 VEHDV-LMIDYVSDRLIVFE-GEPGRHGRALPPMGMR 562
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 6e-15
Identities = 58/255 (22%), Positives = 95/255 (37%), Gaps = 51/255 (20%)
Query: 40 PAISIRNGYFSWD-----SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL 94
AISI N D +L + G +V IVG G GKT+ + + G+L
Sbjct: 82 NAISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQL 141
Query: 95 PP-----------------VSDASAVIR----GTVAYVPQ---VSWIFNATV-RDNILFG 129
P ++ G + V + V + A + L
Sbjct: 142 IPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLK 201
Query: 130 SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 189
E ++E+ + L++ LD +SGG+ QRV++A A+ + +
Sbjct: 202 KVDEVGKFEEVVKELELENVLDRELH-----------QLSGGELQRVAIAAALLRKAHFY 250
Query: 190 IFDDPLSALDAHVGRQVFDRCIRGEL--SGKTRVLVTNQLHFLSQV-DRIILVH-----E 241
FD+P S LD +V R IR L GK ++V + L L + D I +V+
Sbjct: 251 FFDEPSSYLDIRQRLKV-ARVIR-RLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVY 308
Query: 242 GMVKEEGTFEDLSNN 256
G+ + + N
Sbjct: 309 GIFSKPKGTRNGINE 323
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 3e-22
Identities = 43/256 (16%), Positives = 91/256 (35%), Gaps = 32/256 (12%)
Query: 643 LPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRT 702
+EA ++ S S F L+ VL+ S+ + ++G
Sbjct: 329 FRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQG-DFVLNVEEGEFSDSEILVMMGEN 387
Query: 703 GAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPV--LFSGTVRFN 760
G GK++++ L ++ + G+ + +++ + + V LF +R
Sbjct: 388 GTGKTTLIKLLAGALKPDEGQDIPKL-NVSM-----KPQKIAPKFPGTVRQLFFKKIR-- 439
Query: 761 LDPFSEHSDADLW-EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 819
+ + + ++ + D I + V S G+ Q +++ AL
Sbjct: 440 ----GQFLNPQFQTDVVKPLRIDDIIDQE-------VQH----LSGGELQRVAIVLALGI 484
Query: 820 RSKILVLDEATAAVDVRTDALIQKTIREEFKS--CTMLIIAHRLNTIID-CDRILLLDSG 876
+ I ++DE +A +D + K IR T I+ H D++++ +
Sbjct: 485 PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGI 544
Query: 877 RVLE--YDTPEELLSN 890
PE LL+
Sbjct: 545 PSKNAHARAPESLLTG 560
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 8e-22
Identities = 48/233 (20%), Positives = 87/233 (37%), Gaps = 24/233 (10%)
Query: 43 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA 102
S Y S L + ++ ++G G GKT+LI + G L P +
Sbjct: 351 SRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP-DEGQD 409
Query: 103 VIRGTVAYVPQ-VSWIFNATVRDNI---LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDV 158
+ + V+ PQ ++ F TVR + G P + + +D
Sbjct: 410 IPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQ--- 466
Query: 159 TEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV---FDRCIRGEL 215
++SGG+ QRV++ A+ +D+++ D+P + LD+ R I
Sbjct: 467 --------HLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILH-- 516
Query: 216 SGKTRVLVTNQLHFLSQV-DRIILVHEGMVKE--EGTFEDLSNNGELFQKLME 265
+ KT +V + + + D++I+ K E L F K +
Sbjct: 517 NKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNLN 569
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 2e-19
Identities = 45/248 (18%), Positives = 89/248 (35%), Gaps = 39/248 (15%)
Query: 669 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI---- 724
V RY LH L T P +G+VG G GKS+ L L + GR
Sbjct: 81 AHVTHRYSAN-SFKLHRL-PTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPP 138
Query: 725 -------LIDGFDIAKFGLMDLRKILGIIPQSPVLF------SGTVRF---NLDPFSEHS 768
G ++ + L + I + + G V+ L E S
Sbjct: 139 EWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKS 198
Query: 769 DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 828
D+ ++ L++ ++R+ + + S G+ Q ++ + ++ + + + DE
Sbjct: 199 PEDVKRYIKILQLENVLKRD-------IEK----LSGGELQRFAIGMSCVQEADVYMFDE 247
Query: 829 ATAAVDVRTDALIQKTIRE---EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 884
++ +DV+ + IR K ++ + H L+ + D + ++ +
Sbjct: 248 PSSYLDVKQRLNAAQIIRSLLAPTK--YVICVEHDLSVLDYLSDFVCIIYGVPSVYGVVT 305
Query: 885 EELLSNEG 892
EG
Sbjct: 306 LPASVREG 313
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 7e-18
Identities = 43/246 (17%), Positives = 84/246 (34%), Gaps = 41/246 (16%)
Query: 39 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-- 96
LP + + + + + L+ G ++ +VG G GK++ + + G+ P
Sbjct: 75 LPTNLEAHVTHRYSANSFK---LHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNL 131
Query: 97 --------VSDASAVIRGT---------------VAYVPQVSWIFNATVRDNILF-GSAF 132
+ RG+ PQ ++ + G
Sbjct: 132 GRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELL 191
Query: 133 EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIF 191
+ + DV L L + +R + +SGG+ QR ++ + +DV++F
Sbjct: 192 KLRMEKSPEDVKRYIKILQL------ENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMF 245
Query: 192 DDPLSALDAHVGRQVFDRCIRGEL--SGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEG 248
D+P S LD + IR L K + V + L L + D + +++
Sbjct: 246 DEPSSYLDVKQRLNAA-QIIR-SLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVYGV 303
Query: 249 TFEDLS 254
S
Sbjct: 304 VTLPAS 309
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 5e-22
Identities = 58/258 (22%), Positives = 101/258 (39%), Gaps = 23/258 (8%)
Query: 22 LLAEEKILLPNPPLTSGLPA------ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAI 75
L +E + + Y L +I G ++ I
Sbjct: 258 YLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGI 317
Query: 76 VGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQ-VSWIFNATVRDNILFGSAFEP 134
VG G GKT+ + + G P ++ TVAY PQ + + TV + L
Sbjct: 318 VGPNGIGKTTFVKMLAGVEEP-TEGKIEWDLTVAYKPQYIKADYEGTVYE--LLSKIDAS 374
Query: 135 ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDD 193
+ T L L + ++ +R V +SGG+ QRV++A + ++D+++ D+
Sbjct: 375 -KLNSNFYKTELLKPLGI------IDLYDREVNELSGGELQRVAIAATLLRDADIYLLDE 427
Query: 194 PLSALDAHVGRQVFDRCIRG--ELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTF 250
P + LD V R IR E + KT ++V + + + V DR++ V EG + G
Sbjct: 428 PSAYLDVEQRLAVS-RAIRHLMEKNEKTALVVEHDVLMIDYVSDRLM-VFEGEPGKYGRA 485
Query: 251 EDLSNNGELFQKLMENAG 268
E + + + G
Sbjct: 486 LPPMGMREGMNRFLASIG 503
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 2e-19
Identities = 47/224 (20%), Positives = 84/224 (37%), Gaps = 36/224 (16%)
Query: 669 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV------ELERG 722
ED V RY VL+ L + VGIVG G GKS+ + L + + +
Sbjct: 25 EDCVHRYGVN-AFVLYRL-PVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSW 82
Query: 723 RILIDGFDIAKFGLMDLRKILG----IIPQS------PVLFSGTVRFNLDPFSEHSDADL 772
+I F + K+ + + P G V L E +
Sbjct: 83 DGVIRAFRGNEL-QNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLE- 140
Query: 773 WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 832
E ++ L++ + R + S G+ Q ++++ ALLR + DE ++
Sbjct: 141 -EVVKALELENVLERE-------IQH----LSGGELQRVAIAAALLRNATFYFFDEPSSY 188
Query: 833 VDVRTDALIQKTIREEFKS--CTMLIIAHRLNTIID-CDRILLL 873
+D+R + IR ++L++ H L + D I ++
Sbjct: 189 LDIRQRLNAARAIR-RLSEEGKSVLVVEHDLAVLDYLSDIIHVV 231
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 3e-19
Identities = 50/251 (19%), Positives = 89/251 (35%), Gaps = 35/251 (13%)
Query: 646 EAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAG 705
+ + + +V Y L I + +GIVG G G
Sbjct: 268 PYEIKFTKTGERVEIERETLVTYPRLVKDYGSF---RLEVEPGEIKKGEVIGIVGPNGIG 324
Query: 706 KSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVR---FNLD 762
K++ + L + E G+I D + + GTV +D
Sbjct: 325 KTTFVKMLAGVEEPTEGKIEWDL------------TVAYKPQYIKADYEGTVYELLSKID 372
Query: 763 PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 822
+S+ E L+ + D R S G+ Q ++++ LLR +
Sbjct: 373 ASKLNSNFYKTELLKPLGIIDLYDREVN-----------ELSGGELQRVAIAATLLRDAD 421
Query: 823 ILVLDEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIID--CDRILLLDSGRV 878
I +LDE +A +DV + + IR E T L++ H + +ID DR+++ + G
Sbjct: 422 IYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLMVFE-GEP 479
Query: 879 LEYDTPEELLS 889
+Y +
Sbjct: 480 GKYGRALPPMG 490
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 1e-12
Identities = 54/220 (24%), Positives = 87/220 (39%), Gaps = 46/220 (20%)
Query: 61 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----VSDASAVIR---------- 105
L + G +V IVG G GK++ + + G+L P VIR
Sbjct: 38 LYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY 97
Query: 106 ------GTVAYVPQ------VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLL 153
G + V + + V + + A E + E+ + L++ L+
Sbjct: 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELL--KKADETGKLEEVVKALELENVLE-- 153
Query: 154 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG 213
EI +SGG+ QRV++A A+ N+ + FD+P S LD IR
Sbjct: 154 -----REIQH----LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAAR-AIR- 202
Query: 214 EL--SGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTF 250
L GK+ ++V + L L + D I +V+ G G F
Sbjct: 203 RLSEEGKSVLVVEHDLAVLDYLSDIIHVVY-GEPGVYGIF 241
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 98.9 bits (247), Expect = 2e-21
Identities = 49/279 (17%), Positives = 100/279 (35%), Gaps = 49/279 (17%)
Query: 644 PSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTG 703
++ E + +K+ ++ + L + + +GI+G G
Sbjct: 248 DEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDF---QLVVDNGEAKEGEIIGILGPNG 304
Query: 704 AGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL-D 762
GK++ L + + G + + ++ ++I + GTV+ L +
Sbjct: 305 IGKTTFARILVGEITADEGSVTPEKQILS----YKPQRIF-------PNYDGTVQQYLEN 353
Query: 763 PFSEHSDADLW---EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 819
+ W E +R +L + N V++ S G+ Q L ++ L +
Sbjct: 354 ASKDALSTSSWFFEEVTKRLNLHRLLESN-------VND----LSGGELQKLYIAATLAK 402
Query: 820 RSKILVLDEATAAVDVRTDALIQKTIR---EEFKSCTMLIIAHRLNTIID--CDRILLLD 874
+ + VLD+ ++ +DV ++ K I+ E K II H L+ I D DRI++
Sbjct: 403 EADLYVLDQPSSYLDVEERYIVAKAIKRVTRERK-AVTFIIDHDLS-IHDYIADRIIVFK 460
Query: 875 SGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSL 913
G + + ++LR L
Sbjct: 461 -GEPEKAGLATS------------PVTLKTGMNEFLREL 486
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 97.0 bits (242), Expect = 6e-21
Identities = 57/295 (19%), Positives = 116/295 (39%), Gaps = 34/295 (11%)
Query: 22 LLAEEKILLPNPPLTSGLPAIS---------IRNGYFSWDSKAERPTLLNINLDIPVGSL 72
L E + + + L +S + + K L+ N + G +
Sbjct: 237 YLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEI 296
Query: 73 VAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI-FNATVRDNILFGSA 131
+ I+G G GKT+ ++GE+ + + ++Y PQ + ++ TV+ +A
Sbjct: 297 IGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQ--YLENA 354
Query: 132 FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFI 190
+ A + + L+L + E V ++SGG+ Q++ +A + +D+++
Sbjct: 355 SKDALSTSSWFFEEVTKRLNL------HRLLESNVNDLSGGELQKLYIAATLAKEADLYV 408
Query: 191 FDDPLSALDAHVGRQVFDRCIRG--ELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEE 247
D P S LD R + + I+ ++ + L + DRII V +G ++
Sbjct: 409 LDQPSSYLDVEE-RYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRII-VFKGEPEKA 466
Query: 248 GTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKE 302
G ++ M E++ E E D +T +P N + + L +
Sbjct: 467 GLATS--------PVTLKTG--MNEFLRELEVTFRRDAETGRPRVNKIGSYLDRV 511
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 9e-19
Identities = 40/243 (16%), Positives = 92/243 (37%), Gaps = 35/243 (14%)
Query: 669 EDVVLRYRPELPPVLHGLSFTIP-PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 727
+V+ RY+ P + +G++G+ G GK+++L L G I+ +
Sbjct: 3 GEVIHRYKVN---GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKIL-------AGEIIPN 52
Query: 728 --GFDIAKFGLMDLRKI----LGIIPQSPVLFSGTVR-----FNLDPFSEHSDADLWEAL 776
+ L++ + + +S ++ ++ S+ + E L
Sbjct: 53 FGDPNSKVGKDEVLKRFRGKEIYNYFKEL--YSNELKIVHKIQYVEYASKFLKGTVNEIL 110
Query: 777 ERAHLKDAIRR--NSLGL----DAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 830
+ + L + + + S G Q L ++ +LLR + + + D+ +
Sbjct: 111 TKIDERGKKDEVKELLNMTNLWNKDANI----LSGGGLQRLLVAASLLREADVYIFDQPS 166
Query: 831 AAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889
+ +DVR + K IRE K+ ++++ H L + D I ++ + + +
Sbjct: 167 SYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAA 226
Query: 890 NEG 892
G
Sbjct: 227 RVG 229
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 8e-16
Identities = 44/216 (20%), Positives = 81/216 (37%), Gaps = 29/216 (13%)
Query: 62 NINLDIPV-GSLVAIVGGTGEGKTSLISAMLGELPP----------VSDASAVIRGT-VA 109
L P +++ ++G G GKT+++ + GE+ P + RG +
Sbjct: 16 LFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIY 75
Query: 110 YVPQ---------VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 160
+ V I L G+ K + +LL ++T
Sbjct: 76 NYFKELYSNELKIVHKIQYVEYASKFLKGT--VNEILTKIDERGKKDEVKELL---NMTN 130
Query: 161 IGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKT 219
+ + +SGG QR+ +A ++ +DV+IFD P S LD + IR L K
Sbjct: 131 LWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAK-AIRELLKNKY 189
Query: 220 RVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLS 254
++V + L L + D I +++ + +
Sbjct: 190 VIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYA 225
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 2e-18
Identities = 51/226 (22%), Positives = 99/226 (43%), Gaps = 23/226 (10%)
Query: 683 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 742
L G+S ++ D I+G G+GKS+++N + ++ + GR+ + DI + ++
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITN---KEPAEL 79
Query: 743 --LGIIP--QSPVLFSG-TVRFN-LDPFSEHSDADLWEALERAHLKD--AIRRNS----- 789
GI+ Q+P TV N L ++ L + + + +
Sbjct: 80 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILE 139
Query: 790 -LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR-TDALIQ--KTI 845
L L S GQ +L+ + RAL+ K++V+DE A V + +
Sbjct: 140 FLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL 199
Query: 846 REEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890
+ + T LII HRL+ +++ D + ++ +G+++ EE + N
Sbjct: 200 KAK--GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 243
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 84.4 bits (210), Expect = 3e-18
Identities = 57/229 (24%), Positives = 102/229 (44%), Gaps = 38/229 (16%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 741
+ G+ +P V ++G GAGK++ L+ + +V ++G+I+ +G DI
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITN---KPAHV 77
Query: 742 I--LGIIPQSP---VLFSG-TVRFNLD--PFSEHSDADLWEALERAH-----LKDAIRRN 788
I +GI P +F TV NL ++ + LE LK+ R
Sbjct: 78 INRMGIA-LVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKE--RLK 134
Query: 789 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT---AAVDVRTDALIQKTI 845
L G S G++Q+L++ RAL+ R K+L++DE + A + V + + I
Sbjct: 135 QL--------GG-TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKI 185
Query: 846 REEFKSCTMLII---AHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNE 891
+E T+L++ A + +L++G+++ ELL NE
Sbjct: 186 NQE--GTTILLVEQNALGALKV--AHYGYVLETGQIVLEGKASELLDNE 230
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 65.2 bits (160), Expect = 1e-11
Identities = 57/218 (26%), Positives = 97/218 (44%), Gaps = 31/218 (14%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-------------DASAVIRG 106
+ I+L +P G +V ++G G GKT+ +SA+ G + A + R
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81
Query: 107 TVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGER- 164
+A VP+ IF TV +N++ G+ + D L+ L P + ER
Sbjct: 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRD---LEWIFSLFP-----RLKERL 133
Query: 165 ---GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKT 219
G +SGG++Q +++ RA+ S + + D+P L + +VF+ + I E G T
Sbjct: 134 KQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQE--GTT 191
Query: 220 RVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 256
+LV N L L ++ G + EG +L +N
Sbjct: 192 ILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 2e-16
Identities = 43/217 (19%), Positives = 86/217 (39%), Gaps = 42/217 (19%)
Query: 62 NINLDIPVGS-LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-VAYVP----QVS 115
+N+D +G ++G TG GK+ + ++ + + G + +P +
Sbjct: 15 RLNVDFEMGRDYCVLLGPTGAGKSVFLE-LIAGIVKPDRGEVRLNGADITPLPPERRGIG 73
Query: 116 WIF-------NATVRDNILFGSAFEP-----ARYEKAIDVTSLQHDLDLLPGGDVTEIGE 163
++ + +V NI +G R + + + H LD P
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA-------- 125
Query: 164 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS------G 217
+SGG++QRV++ARA+ + + D+PLSA+D + EL
Sbjct: 126 ---RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVL-----MEELRFVQREFD 177
Query: 218 KTRVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDL 253
+ VT + + D + ++ G + E+G ++L
Sbjct: 178 VPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKEL 214
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 3e-09
Identities = 55/211 (26%), Positives = 96/211 (45%), Gaps = 42/211 (19%)
Query: 696 VGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF-- 753
++G TGAGKS L + IV+ +RG + ++G DI L R+ +G +PQ LF
Sbjct: 27 CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPERRGIGFVPQDYALFPH 84
Query: 754 ---SGTVRFNLDPFSEHS-DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 809
+ + L D + E E+ + + R A++S G G+RQ
Sbjct: 85 LSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP----ARLS--G-----GERQ 133
Query: 810 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS------CTMLIIAHRLNT 863
++L+RAL+ + ++L+LDE +AV D + + EE + +L + H
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAV----DLKTKGVLMEELRFVQREFDVPILHVTH---- 185
Query: 864 IID-------CDRILLLDSGRVLEYDTPEEL 887
D D + ++ +GR++E +EL
Sbjct: 186 --DLIEAAMLADEVAVMLNGRIVEKGKLKEL 214
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 2e-15
Identities = 58/246 (23%), Positives = 103/246 (41%), Gaps = 49/246 (19%)
Query: 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 101
I ++N + K + L N+N++I G I+G +G GKT+ + ++ L S
Sbjct: 4 IIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMR-IIAGLDVPSTGE 61
Query: 102 AVIRGTV------AYVP----QVSWIF-------NATVRDNILFG------SAFE-PARY 137
+ VP ++ +F N T +NI F S E R
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 138 EKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSA 197
E+ + + H L+ P +SG Q+QRV++ARA+ + + + D+P S
Sbjct: 122 EEVAKILDIHHVLNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 198 LDAHVGRQVFDRCIRGELS------GKTRVLVT-NQLHFLSQVDRIILVHEGMVKEEGTF 250
LDA + R + G T ++V+ + + DR+ ++ +G + + G
Sbjct: 171 LDARMRDSA-----RALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKP 225
Query: 251 EDLSNN 256
EDL +N
Sbjct: 226 EDLYDN 231
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 5e-09
Identities = 61/266 (22%), Positives = 110/266 (41%), Gaps = 67/266 (25%)
Query: 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV----ELE 720
I ++V ++ L ++ I ++ GI+G +GAGK+ T RI+
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKT----TFMRIIAGLDVPS 58
Query: 721 RGRILIDGFDIAKFGLMDL----RKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEA 775
G + D +A G + + RKI G++ Q+ L+ T N+ F
Sbjct: 59 TGELYFDDRLVASNGKLIVPPEDRKI-GMVFQTWALYPNLTAFENI-AF----------P 106
Query: 776 LERAHL-KDAIRRNSLGLDAQVSEAGE-------------NFSVGQRQLLSLSRALLRRS 821
L + K+ IR+ +V E + S Q+Q ++L+RAL++
Sbjct: 107 LTNMKMSKEEIRK-------RVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDP 159
Query: 822 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN-TII----D-------CDR 869
+L+LDE + + DA ++ + R K + RL T++ D DR
Sbjct: 160 SLLLLDEPFSNL----DARMRDSARALVKE-----VQSRLGVTLLVVSHDPADIFAIADR 210
Query: 870 ILLLDSGRVLEYDTPEELLSNEGSSF 895
+ +L G++++ PE+L N S
Sbjct: 211 VGVLVKGKLVQVGKPEDLYDNPVSIQ 236
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 79.9 bits (196), Expect = 3e-15
Identities = 75/495 (15%), Positives = 136/495 (27%), Gaps = 144/495 (29%)
Query: 611 LNITSLLTAVLRL-ASLAENSLNAVER-VG-----NYIELPSEAPLVIESNRPPPGWPSS 663
+ ++ LRL +L V++ V NY ++ + PS
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY-------KFLMSPIKTEQRQPSM 107
Query: 664 GSIKFEDVVLR-------------YRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSML 710
+ + + R R + L + P+ V I G G+GK+ +
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167
Query: 711 NTLFRIVELERGRILIDGFDI--AKFGLMDLRKILGIIPQSPVLFSGTVRFNLDP-FSEH 767
+ +++ F I + + + + Q L + +DP ++
Sbjct: 168 LDVCLSYKVQCKM----DFKIFWLNLKNCNSPETVLEMLQK--LL-----YQIDPNWTSR 216
Query: 768 SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLD 827
SD L ++ +RR LL +LVL
Sbjct: 217 SDHSSNIKLRIHSIQAELRR----------------------LLKSKP--YENC-LLVLL 251
Query: 828 EATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID------CDRILLLDSGRVLE 880
+V+ F SC +L+ R + D I L L
Sbjct: 252 ------NVQN-----AKAWNAFNLSCKILLTT-RFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 881 YDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVLGGEAENKLREENKQI---------- 930
D + LL +YL L E
Sbjct: 300 PDEVKSLL------------------LKYL------DCRPQDLPREVLTTNPRRLSIIAE 335
Query: 931 ---DGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLEVEDQNNILKK----TKDAVVTL 983
DG W W L + SS L LE + + + A +
Sbjct: 336 SIRDGLATW---DNWKHVNCDKLTTIIESS---LNVLEPAEYRKMFDRLSVFPPSAHIPT 389
Query: 984 QGVLE----GKHDKEIEESLNQ-HEVS-TDGWWSALYRMIEGLSVMSRLARN---RLHQS 1034
+L ++ +N+ H+ S + I + + ++ LH+S
Sbjct: 390 I-LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448
Query: 1035 --DYDLEERSIDWDH 1047
D+ ++ D D
Sbjct: 449 IVDHYNIPKTFDSDD 463
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 72.6 bits (177), Expect = 5e-13
Identities = 78/574 (13%), Positives = 158/574 (27%), Gaps = 186/574 (32%)
Query: 5 AWQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGL-----PAISIRNGYFSWDSKAERPT 59
+ S+ ++ +++ N P + +R
Sbjct: 97 PIKTEQRQPSM-MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA------------ 143
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR--GTVAYVP-QVSW 116
LL + V I G G GKT + A V + ++ W
Sbjct: 144 LLELR----PAKNVLIDGVLGSGKTWV-------------ALDVCLSYKVQCKMDFKIFW 186
Query: 117 IFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 176
+ N + P + + Q D + D + + ++ + +R+
Sbjct: 187 L-N--------LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 177 SMARAVYSNSDVFIFDD--PLSALDAHVGRQVFD-RCIRGELSGKTRVLVTNQLHFLSQV 233
+ Y N + + + A +A F+ C ++L+T + F
Sbjct: 238 -LKSKPYENC-LLVLLNVQNAKAWNA------FNLSC---------KILLTTR--FKQVT 278
Query: 234 DRI---ILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKP 290
D + H + T L K Y++ +
Sbjct: 279 DFLSAATTTHISLDHHSMTLTP-DEVKSLLLK----------YLDCRPQ----------- 316
Query: 291 AANGVDNDLPKEASDT---------RKTKEGKSVL-----IKQEERETGV-VSFKVLS-- 333
DLP+E T ++G + + ++ T + S VL
Sbjct: 317 -------DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 334 ----RYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTD---------------QSS 374
+ + + + W D S
Sbjct: 370 EYRKMFDR-------------LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416
Query: 375 LKTHGPLFYNTIYSLLSFGQVLVTLANSYWL---IISSLYAAKRLHDAMLHSILRAPM-- 429
++ +I S+ ++ V L N Y L I+ Y + D ++ +
Sbjct: 417 VEKQPKESTISIPSIYL--ELKVKLENEYALHRSIVDH-YNIPKTFD--SDDLIPPYLDQ 471
Query: 430 -VFFHTNPLGR-IINRFAKDLGDIDRNVAVFVNM-FMGQVSQLLSTFVLIGIVSTMSLW- 485
+ H +G + N + + R VF++ F+ Q I + W
Sbjct: 472 YFYSH---IGHHLKNIEHPERMTLFRM--VFLDFRFLEQ-----------KIRHDSTAWN 515
Query: 486 ---AIMPLL--LLFYAAYLYYQSTAREVKRLDSI 514
+I+ L L FY Y+ E + +++I
Sbjct: 516 ASGSILNTLQQLKFYKPYICDNDPKYE-RLVNAI 548
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 2e-14
Identities = 59/226 (26%), Positives = 94/226 (41%), Gaps = 53/226 (23%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-VAYVP----QVSW 116
NINL I G +A++G +G GK++L+ + + + V +P V
Sbjct: 21 NINLKIKDGEFMALLGPSGSGKSTLLY-TIAGIYKPTSGKIYFDEKDVTELPPKDRNVGL 79
Query: 117 IF-------NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 162
+F + TV NI F + + + + L+ P
Sbjct: 80 VFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPW------- 132
Query: 163 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS------ 216
+SGGQ+QRV++ARA+ +V + D+PLS LDA + +V R EL
Sbjct: 133 ----QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEV-----RAELKRLQKEL 183
Query: 217 GKTRVLVTNQLHFLSQV------DRIILVHEGMVKEEGTFEDLSNN 256
G T V VT H Q DRI ++ EG + + GT +++
Sbjct: 184 GITTVYVT---H--DQAEALAMADRIAVIREGEILQVGTPDEVYYK 224
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 2e-14
Identities = 61/251 (24%), Positives = 109/251 (43%), Gaps = 51/251 (20%)
Query: 32 NPPLTSGLPAISIRNGY--FSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA 89
+ G I + +++ + ++ I G +V ++G +G GKT+++
Sbjct: 5 HHHHHHGSMTIEFVGVEKIYPGGARS----VRGVSFQIREGEMVGLLGPSGSGKTTILR- 59
Query: 90 MLGELPPVSDASAVIRGT-VAYVP----QVSWIF-------NATVRDNILFG-------S 130
++ L + I G V +P V +F + TV DN+ FG
Sbjct: 60 LIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPK 119
Query: 131 AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVF 189
AR + + L+ R + +SGGQ+QRV++ARA+ V
Sbjct: 120 DEMDARVRELLRFMRLES------------YANRFPHELSGGQQQRVALARALAPRPQVL 167
Query: 190 IFDDPLSALDAHVGRQVFDRCIRGELS------GKTRVLVT-NQLHFLSQVDRIILVHEG 242
+FD+P +A+D + R++ R + G T V VT +Q L DR++++HEG
Sbjct: 168 LFDEPFAAIDTQIRREL-----RTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEG 222
Query: 243 MVKEEGTFEDL 253
V++ GT E++
Sbjct: 223 NVEQFGTPEEV 233
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 6e-08
Identities = 64/250 (25%), Positives = 110/250 (44%), Gaps = 51/250 (20%)
Query: 662 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV---- 717
S +I+F V Y + G+SF I + VG++G +G+GK+ T+ R++
Sbjct: 11 GSMTIEFVGVEKIYPGGAR-SVRGVSFQIREGEMVGLLGPSGSGKT----TILRLIAGLE 65
Query: 718 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNL-------DPFSEHSD 769
+G + I G + R + G++ Q+ LF TV N+ + D
Sbjct: 66 RPTKGDVWIGGKRVTDLPPQK-RNV-GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMD 123
Query: 770 ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEA 829
A + E L L+ R ++S G GQ+Q ++L+RAL R ++L+ DE
Sbjct: 124 ARVRELLRFMRLESYANRFP----HELS--G-----GQQQRVALARALAPRPQVLLFDEP 172
Query: 830 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN-TII----D-------CDRILLLDSGR 877
AA+ D I++ +R + + + T + D DR+L+L G
Sbjct: 173 FAAI----DTQIRRELRTFVRQ-----VHDEMGVTSVFVTHDQEEALEVADRVLVLHEGN 223
Query: 878 VLEYDTPEEL 887
V ++ TPEE+
Sbjct: 224 VEQFGTPEEV 233
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 6e-14
Identities = 57/226 (25%), Positives = 96/226 (42%), Gaps = 53/226 (23%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-VAYVP----QVSW 116
+NL I G + ++G +G GKT+ + M+ L ++ V Y+P +S
Sbjct: 29 KLNLTIKDGEFLVLLGPSGCGKTTTLR-MIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM 87
Query: 117 IF-------NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 162
+F + TV +NI F R A ++ ++ L+ P
Sbjct: 88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA------- 140
Query: 163 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS------ 216
+SGGQ+QRV++ARA+ DV + D+PLS LDA + + R E+
Sbjct: 141 ----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAM-----RAEIKKLQQKL 191
Query: 217 GKTRVLVTNQLHFLSQV------DRIILVHEGMVKEEGTFEDLSNN 256
T + VT H QV DRI +++ G + + G+ ++
Sbjct: 192 KVTTIYVT---H--DQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 232
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 6e-14
Identities = 62/232 (26%), Positives = 106/232 (45%), Gaps = 54/232 (23%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL--P----------PVSDAS----AV 103
L N+NL+I G V+I+G +G GK+++++ ++G L P +D
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLN-IIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 104 IRG-TVAYVPQVSWIFN----ATVRDN-----ILFGSAFEPA--RYEKAIDVTSLQHDLD 151
IR + +V Q FN T +N I R ++A++ L
Sbjct: 80 IRRDKIGFVFQQ---FNLIPLLTALENVELPLIFKYRGAMSGEERRKRALEC------LK 130
Query: 152 LLPGGDVTEIGERGVN-----ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 206
+ E+ ER N +SGGQ+QRV++ARA+ +N + + D P ALD+ G ++
Sbjct: 131 MA------ELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKI 184
Query: 207 FDRCIRGEL---SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSN 255
+ +L GKT V+VT+ ++ +RII + +G V+ E +
Sbjct: 185 MQ--LLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGFDD 234
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 4e-12
Identities = 56/237 (23%), Positives = 103/237 (43%), Gaps = 35/237 (14%)
Query: 666 IKFEDVVLRYR--PELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 723
+K ++V Y+ E+ L ++ I + V I+G +G+GKS+MLN + + + G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 724 ILIDGFDIAKFG---LMDLR-KILGIIPQSPVLFSGTVRFNLDP-------------FSE 766
+ ID L +R +G + Q FNL P F
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQ---------FNLIPLLTALENVELPLIFKY 112
Query: 767 HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN-FSVGQRQLLSLSRALLRRSKILV 825
E +RA + ++ L+ + + N S GQ+Q ++++RAL I++
Sbjct: 113 RGAMSGEERRKRA--LECLKM--AELEERFANHKPNQLSGGQQQRVAIARALANNPPIIL 168
Query: 826 LDEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 880
D+ T A+D +T I + +++ E T++++ H +N +RI+ L G V
Sbjct: 169 ADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 8e-14
Identities = 56/226 (24%), Positives = 97/226 (42%), Gaps = 53/226 (23%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-VAYVP----QVSW 116
++ ++ G VA++G +G GKT+ + ML + + V +P +V
Sbjct: 21 GVSFEVKDGEFVALLGPSGCGKTTTLL-MLAGIYKPTSGEIYFDDVLVNDIPPKYREVGM 79
Query: 117 IF-------NATVRDNILFG--SAFEP-----ARYEKAIDVTSLQHDLDLLPGGDVTEIG 162
+F + TV +NI F + R + + + LD P
Sbjct: 80 VFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPT------- 132
Query: 163 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS------ 216
+SGGQ+QRV++ARA+ V +FD+PLS LDA++ + R E+
Sbjct: 133 ----QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIM-----RAEIKHLQQEL 183
Query: 217 GKTRVLVTNQLHFLSQV------DRIILVHEGMVKEEGTFEDLSNN 256
G T V VT H Q RI + ++G + + GT +++ ++
Sbjct: 184 GITSVYVT---H--DQAEAMTMASRIAVFNQGKLVQYGTPDEVYDS 224
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 70.2 bits (173), Expect = 1e-13
Identities = 51/218 (23%), Positives = 92/218 (42%), Gaps = 47/218 (21%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL--P----------PVSDAS----AV 103
L I+L + G V+I+G +G GK++L+ +LG L P V + ++
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLY-ILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 104 IR-GTVAYVPQVSWIFN----ATVRDNI----LFGSAFEPARYEKAIDVTS---LQHDLD 151
+R + +V Q T +N+ L + E+ + S L L
Sbjct: 79 LRNRKLGFVFQF---HYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLS 135
Query: 152 LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 211
P +SGG++QRV++ARA+ + + D+P LD+ ++V D I
Sbjct: 136 RKPY-----------ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMD--I 182
Query: 212 RGEL--SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEE 247
++ G + V+VT++ R + + +G V E
Sbjct: 183 FLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGE 220
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 64.4 bits (158), Expect = 1e-11
Identities = 50/235 (21%), Positives = 94/235 (40%), Gaps = 40/235 (17%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
++ E++ R +L G+S ++ + V I+G +G+GKS++L L + G++
Sbjct: 5 LRAENIKKVIRGY--EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVF 62
Query: 726 IDGFDIAKFG---LMDLR-KILGIIPQSPVLFSGTVRFNLDP-------------FSEHS 768
++G ++ L LR + LG + Q L P
Sbjct: 63 LEGKEVDYTNEKELSLLRNRKLGFVFQF---------HYLIPELTALENVIVPMLKMGKP 113
Query: 769 DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 828
EA ER + + LGL ++S S G++Q ++++RAL +L DE
Sbjct: 114 KK---EAKERG--EYLLSE--LGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADE 166
Query: 829 ATAAVDVRTDALIQ---KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 880
T +D + I E +++++ H R L + G+V+
Sbjct: 167 PTGNLDSANTKRVMDIFLKINEGGT--SIVMVTHERELAELTHRTLEMKDGKVVG 219
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 1e-13
Identities = 55/221 (24%), Positives = 104/221 (47%), Gaps = 45/221 (20%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----VSDASAVIRGTVAYVP----Q 113
+I+L + G ++ I+G +G GKT+L+ + G P +S + I +P +
Sbjct: 22 DISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR 81
Query: 114 VSWIF-------NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVT 159
+ ++ + TV NI +G +A E R E +++T + P
Sbjct: 82 LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPH---- 137
Query: 160 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL---- 215
+SGGQ+QR ++ARA+ + ++ + D+P SALD + RQ IR ++
Sbjct: 138 -------ELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQ-----IREDMIAAL 185
Query: 216 --SGKTRVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDL 253
+GK+ V V+ ++ L DRI ++ +G + + + +L
Sbjct: 186 RANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHEL 226
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 8e-11
Identities = 55/253 (21%), Positives = 106/253 (41%), Gaps = 56/253 (22%)
Query: 663 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV----E 718
+ ++ + ++ PVL+ +S ++ P + + I+G +G GK+ TL R + +
Sbjct: 2 TAALHIGHLSKSFQNT--PVLNDISLSLDPGEILFIIGASGCGKT----TLLRCLAGFEQ 55
Query: 719 LERGRILIDGFDIAKFGLM---DLRKILGIIPQSPVLF-----SGTVRFNLDPFSEHSDA 770
+ G I + G I R++ G + Q VLF + + L + A
Sbjct: 56 PDSGEISLSGKTIFSKNTNLPVRERRL-GYLVQEGVLFPHLTVYRNIAYGL-GNGKGRTA 113
Query: 771 DLW----EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVL 826
LE + + R ++S G GQ+Q +L+RAL ++++L
Sbjct: 114 QERQRIEAMLELTGISELAGR----YPHELS--G-----GQQQRAALARALAPDPELILL 162
Query: 827 DEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN-TII----D-------CDRILLLD 874
DE +A+D + +++ IRE+ + + + D DRI ++
Sbjct: 163 DEPFSALDEQ----LRRQIREDMIA-----ALRANGKSAVFVSHDREEALQYADRIAVMK 213
Query: 875 SGRVLEYDTPEEL 887
GR+L+ +P EL
Sbjct: 214 QGRILQTASPHEL 226
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 3e-13
Identities = 59/230 (25%), Positives = 111/230 (48%), Gaps = 40/230 (17%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG--LMDL 739
VL G++ I + V ++G +G+GKS+ L L + + + G I+IDG ++ L +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 740 RKILGIIPQSPVLFSGTVRFNLDPFSEH-------SDADLW-------EALERAHLKDAI 785
R+ +G++ Q FNL P H + A + +A +A + +
Sbjct: 99 REEVGMVFQR---------FNLFP---HMTVLNNITLAPMKVRKWPREKAEAKA--MELL 144
Query: 786 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD---VRTDALIQ 842
+ +GL + ++ S GQ Q ++++RAL KI++ DE T+A+D V + L
Sbjct: 145 DK--VGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVG-EVL-- 199
Query: 843 KTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890
+++ TM+++ H + + DR+L +D G ++E PE+L
Sbjct: 200 SVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 5e-13
Identities = 60/220 (27%), Positives = 99/220 (45%), Gaps = 33/220 (15%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG--------------ELPPVSDASAVIR 105
L IN+ I G +V ++G +G GK++ + + L +R
Sbjct: 40 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVR 99
Query: 106 GTVAYVPQVSWIFN----ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 161
V V Q FN TV +NI P + K + ++LL D +
Sbjct: 100 EEVGMVFQR---FNLFPHMTVLNNITLA----PMKVRKWPREKAEAKAMELL---DKVGL 149
Query: 162 GERG----VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 217
++ ++SGGQ QRV++ARA+ + +FD+P SALD + +V + G
Sbjct: 150 KDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEG 209
Query: 218 KTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 256
T V+VT+++ F +V DR++ + G + EEG EDL +
Sbjct: 210 MTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 5e-13
Identities = 52/215 (24%), Positives = 92/215 (42%), Gaps = 40/215 (18%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-VAYVP----QVSW 116
N++L + G I+G TG GKT + ++ ++ G V + +++
Sbjct: 18 NLSLKVESGEYFVILGPTGAGKTLFLE-LIAGFHVPDSGRILLDGKDVTDLSPEKHDIAF 76
Query: 117 IF-------NATVRDNILFG----SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERG 165
++ + V+ N+ FG +P R ++H LD P
Sbjct: 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPL---------- 126
Query: 166 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS------GKT 219
+SGG++QRV++ARA+ +N + + D+PLSALD R LS T
Sbjct: 127 -TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENA-----REMLSVLHKKNKLT 180
Query: 220 RVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDL 253
+ +T +Q DRI +V +G + + G E++
Sbjct: 181 VLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 1e-07
Identities = 59/251 (23%), Positives = 103/251 (41%), Gaps = 66/251 (26%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV----ELER 721
I+ E + +++ L LS + + I+G TGAGK+ ++ +
Sbjct: 2 IEIESLSRKWKNF---SLDNLSLKVESGEYFVILGPTGAGKT----LFLELIAGFHVPDS 54
Query: 722 GRILIDGFDIAKFGLMDL----RKILGIIPQSPVLFSG-TVRFNL--------DPFSEHS 768
GRIL+DG D+ DL I + Q+ LF V+ NL +
Sbjct: 55 GRILLDGKDVT-----DLSPEKHDI-AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRV 108
Query: 769 DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 828
+ ++ + RN +S G G++Q ++L+RAL+ KIL+LDE
Sbjct: 109 L----DTARDLKIEHLLDRNP----LTLS--G-----GEQQRVALARALVTNPKILLLDE 153
Query: 829 ATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN-TII----D-------CDRILLLDSG 876
+A+D R Q+ RE + + T++ D DRI ++ G
Sbjct: 154 PLSALDPR----TQENAREMLSV-----LHKKNKLTVLHITHDQTEARIMADRIAVVMDG 204
Query: 877 RVLEYDTPEEL 887
++++ PEE+
Sbjct: 205 KLIQVGKPEEI 215
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 1e-12
Identities = 58/232 (25%), Positives = 102/232 (43%), Gaps = 59/232 (25%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTV-------AYVP-- 112
++L++ G + ++G +G GKT+ + M+ L S I + +VP
Sbjct: 21 EMSLEVKDGEFMILLGPSGCGKTTTLR-MIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79
Query: 113 --QVSWIF-------NATVRDNILFG------SAFE-PARYEKAIDVTSLQHDLDLLPGG 156
++ +F + TV DNI F E R + ++ L L+ P
Sbjct: 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPR- 138
Query: 157 DVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS 216
+SGGQ+QRV++ RA+ VF+ D+PLS LDA + ++ R EL
Sbjct: 139 ----------ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRM-----RAELK 183
Query: 217 ------GKTRVLVTNQLHFLSQV------DRIILVHEGMVKEEGTFEDLSNN 256
G T + VT H QV DRI +++ G++++ G+ +++ +
Sbjct: 184 KLQRQLGVTTIYVT---H--DQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 2e-12
Identities = 63/234 (26%), Positives = 105/234 (44%), Gaps = 49/234 (20%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLI------------------------SAMLGELP 95
L ++L G +++I+G +G GK++ + G+L
Sbjct: 22 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 81
Query: 96 PVSDAS-AVIRGTVAYVPQVSWIFN----ATVRDNILFGSAFEPARYEKAIDVTSLQHDL 150
++R + V Q FN TV +N++ P + + + L
Sbjct: 82 VADKNQLRLLRTRLTMVFQH---FNLWSHMTVLENVMEA----PIQVLGLSKHDARERAL 134
Query: 151 DLLPGGDVTEIGERG-----VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 205
L I ER V++SGGQ+QRVS+ARA+ DV +FD+P SALD + +
Sbjct: 135 KYL---AKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGE 191
Query: 206 VFDRCIRGEL--SGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 256
V ++ +L GKT V+VT+++ F V +I +H+G ++EEG E + N
Sbjct: 192 VLR-IMQ-QLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGN 243
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 4e-11
Identities = 58/243 (23%), Positives = 102/243 (41%), Gaps = 54/243 (22%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD--- 738
VL G+S D + I+G +G+GKS+ L + + + G I+++G +I D
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 739 ----------LRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALE---------RA 779
LR L ++ Q FNL +S + LE
Sbjct: 81 KVADKNQLRLLRTRLTMVFQH---------FNL--WSHMT------VLENVMEAPIQVLG 123
Query: 780 HLKDAIRRNSLGLDAQV--SEAGENF-----SVGQRQLLSLSRALLRRSKILVLDEATAA 832
K R +L A+V E + S GQ+Q +S++RAL +L+ DE T+A
Sbjct: 124 LSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSA 183
Query: 833 VD---VRTDALIQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 887
+D V + L + +++ + TM+++ H + ++ L G++ E PE++
Sbjct: 184 LDPELVG-EVL--RIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV 240
Query: 888 LSN 890
N
Sbjct: 241 FGN 243
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 70.1 bits (171), Expect = 3e-12
Identities = 43/205 (20%), Positives = 76/205 (37%), Gaps = 31/205 (15%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 740
+L+ + + + GI G G GKS TL R I + F +
Sbjct: 449 ILLNKTQLRLKRARRYGICGPNGCGKS----TLMRA---------IANGQVDGFPTQEEC 495
Query: 741 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGL-DAQVSEA 799
+ + + S T LD + + L G D ++
Sbjct: 496 RTVYVEHDIDGTHSDTSV--LD--FVFESGVGTKEAIKDKL------IEFGFTDEMIAMP 545
Query: 800 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAH 859
S G + L+L+RA+LR + IL+LDE T +D A + + T + I+H
Sbjct: 546 ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISH 603
Query: 860 R---LNTIIDCDRILLLDSGRVLEY 881
L+ + C+ I+ + ++ +Y
Sbjct: 604 DSVFLDNV--CEYIINYEGLKLRKY 626
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 60.0 bits (145), Expect = 4e-09
Identities = 31/146 (21%), Positives = 52/146 (35%), Gaps = 14/146 (9%)
Query: 56 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS 115
+ L L + I G G GK++L+ A+ R YV
Sbjct: 447 AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECR--TVYVEHDI 504
Query: 116 WIFNA--TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 173
++ +V D + + L G I +SGG K
Sbjct: 505 DGTHSDTSVLDFVFESGVGTKEAIKDK---------LIEF-GFTDEMIAMPISALSGGWK 554
Query: 174 QRVSMARAVYSNSDVFIFDDPLSALD 199
++++ARAV N+D+ + D+P + LD
Sbjct: 555 MKLALARAVLRNADILLLDEPTNHLD 580
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 2e-06
Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 11/122 (9%)
Query: 766 EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG--ENFSVGQRQLLSLSRALLRRSKI 823
E + + L R +++ LGLD ++ S GQ+ L L+ +R +
Sbjct: 865 EALASGQFRPLTRKEIEEHCSM--LGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHL 922
Query: 824 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHR---LNTIIDCDRILLLDSGRVLE 880
+VLDE T +D + + K ++ EF+ ++II H + + + + GR+
Sbjct: 923 IVLDEPTNYLDRDSLGALSKALK-EFE-GGVIIITHSAEFTKNL--TEEVWAVKDGRMTP 978
Query: 881 YD 882
Sbjct: 979 SG 980
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 5e-06
Identities = 14/59 (23%), Positives = 30/59 (50%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 724
+K ++ +Y P + ++F S ++ ++G GAGKS+++N L + G +
Sbjct: 672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 33/229 (14%), Positives = 75/229 (32%), Gaps = 16/229 (6%)
Query: 16 KRMEEFLLAEEKILLPNPPLTSGL-----PAISIRNGYFSWDSKAERPTLLNINLDIPVG 70
K EE + + P P G+ + + N F + +P + +IN +
Sbjct: 641 KAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGT-SKPQITDINFQCSLS 699
Query: 71 SLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT---VAYVPQVSWIFNATVRDNIL 127
S +A++G G GK++LI+ + GEL P + V +AY+ Q + ++ L
Sbjct: 700 SRIAVIGPNGAGKSTLINVLTGELLP--TSGEVYTHENCRIAYIKQHA----FAHIESHL 753
Query: 128 FGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 187
+ E ++ D + + G +R++ + +
Sbjct: 754 DKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKN 813
Query: 188 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRI 236
+ ++ + + + + + V +
Sbjct: 814 TYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVE-SHSKMVAEV 861
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 1e-04
Identities = 16/80 (20%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 167 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQ 226
+SGGQK ++ +A + + + D+P + LD + ++ E G +++T+
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRD-SLGALSKALK-EFEG-GVIIITHS 957
Query: 227 LHFLSQV-DRIILVHEGMVK 245
F + + + V +G +
Sbjct: 958 AEFTKNLTEEVWAVKDGRMT 977
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 65.6 bits (161), Expect = 3e-11
Identities = 68/226 (30%), Positives = 101/226 (44%), Gaps = 67/226 (29%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSL---------ISAMLGELP----PVSDASAVIRGTV 108
+INLDI G V VG +G GK++L I++ G+L ++D RG V
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITS--GDLFIGEKRMNDTPPAERG-V 77
Query: 109 AYVPQVSWIFN-A-----TVRDNILFG--SAFEP-----ARYEKAIDVTSLQHDLDLLPG 155
V Q + A +V +N+ FG A R + +V L H LD P
Sbjct: 78 GMVFQ-----SYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPK 132
Query: 156 GDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL 215
+SGGQ+QRV++ R + + VF+ D+PLS LDA + Q+ R E+
Sbjct: 133 -----------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM-----RIEI 176
Query: 216 S------GKTRVLVTNQLHFLSQV------DRIILVHEGMVKEEGT 249
S G+T + VT H QV D+I+++ G V + G
Sbjct: 177 SRLHKRLGRTMIYVT---H--DQVEAMTLADKIVVLDAGRVAQVGK 217
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 4e-04
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 10/87 (11%)
Query: 169 SGGQKQRVSMA------RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVL 222
SGG++ + +A + + I D+P LD R++ R +L
Sbjct: 250 SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVIL 309
Query: 223 VTNQLHFLSQVDRIILVHEGMVKEEGT 249
V++ D +I + E G+
Sbjct: 310 VSHDEELKDAADHVIRIS----LENGS 332
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1050 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-77 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-56 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-74 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 9e-54 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 5e-70 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 7e-47 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-68 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 5e-53 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-65 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-49 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 7e-62 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 4e-61 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 5e-38 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-27 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-37 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 3e-21 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 3e-37 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 6e-25 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-35 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 5e-26 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 4e-35 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-25 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-34 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-28 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 3e-32 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 4e-24 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-31 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-21 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 5e-31 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 9e-26 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 8e-31 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-23 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-30 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 6e-26 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-28 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 7e-22 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 7e-28 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-19 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-22 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 8e-18 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-17 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-08 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-08 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-06 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 3e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-06 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-05 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 5e-05 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 7e-05 | |
| d2gj8a1 | 161 | c.37.1.8 (A:216-376) Probable tRNA modification GT | 0.004 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 252 bits (646), Expect = 1e-77
Identities = 83/246 (33%), Positives = 140/246 (56%), Gaps = 2/246 (0%)
Query: 657 PPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI 716
P G I + V +Y P+L ++ +I + V VG +G GKS+++N + R
Sbjct: 8 QPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF 67
Query: 717 VELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL-DPFSEHSDADLWEA 775
++ G+ILIDG +I F LR +G++ Q +LFS TV+ N+ +D ++ EA
Sbjct: 68 YDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEA 127
Query: 776 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 835
+ A+ D I G D +V E G S GQ+Q LS++R L IL+LDEAT+A+D+
Sbjct: 128 AKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDL 187
Query: 836 RTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 895
++++IQ+ + K T LI+AHRL+TI D+I+++++G ++E T EL++ +G ++
Sbjct: 188 ESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQG-AY 246
Query: 896 SKMVQS 901
+
Sbjct: 247 EHLYSI 252
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 193 bits (493), Expect = 2e-56
Identities = 71/246 (28%), Positives = 118/246 (47%), Gaps = 15/246 (6%)
Query: 33 PPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG 92
P+ I I + F ++ E P L +INL I G VA VG +G GK++LI+ +
Sbjct: 8 QPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPR 66
Query: 93 ELPPVSDA------------SAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEP-ARYEK 139
S + +R + V Q + +F+ TV++NIL G +
Sbjct: 67 FYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVE 126
Query: 140 AIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 199
A + + + LP G TE+GERGV +SGGQKQR+S+AR +N + I D+ SALD
Sbjct: 127 AAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALD 186
Query: 200 AHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGEL 259
+ + + +T ++V ++L ++ D+I+++ G + E GT +L
Sbjct: 187 LESESIIQE-ALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGA 245
Query: 260 FQKLME 265
++ L
Sbjct: 246 YEHLYS 251
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 243 bits (623), Expect = 2e-74
Identities = 86/241 (35%), Positives = 141/241 (58%), Gaps = 3/241 (1%)
Query: 663 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 722
+G ++F +V Y P L ++ IP V +VGR+G+GKS++ + + R +++ G
Sbjct: 11 TGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEG 70
Query: 723 RILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN--LDPFSEHSDADLWEALERAH 780
IL+DG D+ ++ L LR + ++ Q+ LF+ TV N E+S + EA A+
Sbjct: 71 HILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAY 130
Query: 781 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 840
D I + GLD + E G S GQRQ ++++RALLR S IL+LDEAT+A+D ++
Sbjct: 131 AMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERA 190
Query: 841 IQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 900
IQ + E K+ T L+IAHRL+TI D I++++ G ++E T ELL+ G ++++ +
Sbjct: 191 IQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHG-VYAQLHK 249
Query: 901 S 901
Sbjct: 250 M 250
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 186 bits (473), Expect = 9e-54
Identities = 70/239 (29%), Positives = 120/239 (50%), Gaps = 16/239 (6%)
Query: 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 100
+ RN F++ + E P L NINL IP G VA+VG +G GK+++ S +
Sbjct: 13 DLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH 71
Query: 101 SAV------------IRGTVAYVPQVSWIFNATVRDNILFG--SAFEPARYEKAIDVTSL 146
+ +R VA V Q +FN TV +NI + + + E+A +
Sbjct: 72 ILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYA 131
Query: 147 QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 206
++ + G T IGE GV +SGGQ+QR+++ARA+ +S + I D+ SALD R +
Sbjct: 132 MDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 191
Query: 207 FDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 265
+ +T +++ ++L + Q D I++V +G++ E GT +L ++ +L +
Sbjct: 192 QA-ALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHK 249
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 231 bits (590), Expect = 5e-70
Identities = 81/237 (34%), Positives = 140/237 (59%), Gaps = 1/237 (0%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
I F ++ RY+P+ P +L ++ +I + +GIVGR+G+GKS++ + R E G++L
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDA 784
IDG D+A LR+ +G++ Q VL + ++ N+ + S + A + A D
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 785 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 844
I G + V E G S GQRQ ++++RAL+ KIL+ DEAT+A+D ++ +I +
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181
Query: 845 IREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 901
+ + K T++IIAHRL+T+ + DRI++++ G+++E +ELLS S +S + Q
Sbjct: 182 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 165 bits (420), Expect = 7e-47
Identities = 66/239 (27%), Positives = 113/239 (47%), Gaps = 18/239 (7%)
Query: 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 101
I+ RN F + L NINL I G ++ IVG +G GK++L + P +
Sbjct: 2 ITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP-ENGQ 59
Query: 102 AVIRGT-------------VAYVPQVSWIFNATVRDNILFGS-AFEPARYEKAIDVTSLQ 147
+I G V V Q + + N ++ DNI + + A +
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119
Query: 148 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 207
+ L G T +GE+G +SGGQ+QR+++ARA+ +N + IFD+ SALD +
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 208 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL-SNNGELFQKLME 265
+ G+T +++ ++L + DRII++ +G + E+G ++L S L+ L +
Sbjct: 180 RN-MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 237
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 227 bits (580), Expect = 2e-68
Identities = 73/248 (29%), Positives = 135/248 (54%), Gaps = 8/248 (3%)
Query: 660 WPSSGSIKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV 717
G ++F+DV Y RP+ VL GL+FT+ P + +VG G+GKS++ L +
Sbjct: 6 LHLEGLVQFQDVSFAYPNRPD-VLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLY 64
Query: 718 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL--DPFSEHSDADLWEA 775
+ G++L+DG + ++ L + + + Q P +F +++ N+ + + ++ A
Sbjct: 65 QPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAA 124
Query: 776 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 835
++ I G D +V EAG S GQRQ ++L+RAL+R+ +L+LD+AT+A+D
Sbjct: 125 AVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDA 184
Query: 836 RTDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGS 893
+ +++ + E E S ++L+I L+ + D IL L+ G + E T ++L+ +G
Sbjct: 185 NSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKG- 243
Query: 894 SFSKMVQS 901
+ MVQ+
Sbjct: 244 CYWAMVQA 251
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 183 bits (467), Expect = 5e-53
Identities = 60/240 (25%), Positives = 108/240 (45%), Gaps = 15/240 (6%)
Query: 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 100
+ ++ F++ ++ + L + + G + A+VG G GK+++ + + P
Sbjct: 11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQ 70
Query: 101 ------------SAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE--KAIDVTSL 146
+ VA V Q +F ++++NI +G +P E A +
Sbjct: 71 LLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGA 130
Query: 147 QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 206
+ LP G TE+ E G +SGGQ+Q V++ARA+ V I DD SALDA+ QV
Sbjct: 131 HSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQV 190
Query: 207 FDRCIR-GELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 265
E ++ +L+T L + Q D I+ + G ++E GT + L + +++
Sbjct: 191 EQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWAMVQ 250
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 218 bits (558), Expect = 1e-65
Identities = 79/238 (33%), Positives = 128/238 (53%), Gaps = 4/238 (1%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
+ V Y + +L +SF P+ + G +G GKS++ + L R + G I
Sbjct: 2 LSARHVDFAY-DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE--HSDADLWEALERAHLKD 783
IDG I L + R +G + Q + +GT+R NL E ++D DLW+ L+ A +
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARS 120
Query: 784 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 843
+ L+ +V E G S GQRQ L+++RA LR KIL+LDEATA++D +++++QK
Sbjct: 121 FVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180
Query: 844 TIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 901
+ K T L+IAHRL+TI+D D+I ++ G++ EL++ ++K V
Sbjct: 181 ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHP-LYAKYVSE 237
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 173 bits (439), Expect = 2e-49
Identities = 58/238 (24%), Positives = 116/238 (48%), Gaps = 17/238 (7%)
Query: 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----- 96
+S R+ F++D L +I+ + S++A G +G GK+++ S + P
Sbjct: 2 LSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 97 ------VSDAS-AVIRGTVAYVPQVSWIFNATVRDNILFG--SAFEPARYEKAIDVTSLQ 147
+ + S R + +V Q S I T+R+N+ +G + + +D+ +
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 148 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 207
++ +P TE+GERGV ISGGQ+QR+++ARA N + + D+ ++LD+ V
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 208 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 265
+ + + G+T +++ ++L + D+I + +G + G +L L+ K +
Sbjct: 180 -KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVS 236
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 210 bits (535), Expect = 7e-62
Identities = 90/268 (33%), Positives = 145/268 (54%), Gaps = 3/268 (1%)
Query: 13 VSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNG--YFSWDSKAERPTLLNINLDIPVG 70
+ ++ + F LL ++G S FS P L NINL+I G
Sbjct: 3 IIMENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKG 62
Query: 71 SLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGS 130
++AI G TG GKTSL+ +LGEL S+ G V++ Q SWI T+++NI+FG
Sbjct: 63 EMLAITGSTGSGKTSLLMLILGELEA-SEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGV 121
Query: 131 AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 190
+++ RY+ + LQ D+ D T +GE GV +SGGQ+ R+S+ARAVY ++D+++
Sbjct: 122 SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYL 181
Query: 191 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTF 250
D P LD QVF+ C+ ++ KTR+LVT+++ L + D+I+++H+G GTF
Sbjct: 182 LDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTF 241
Query: 251 EDLSNNGELFQKLMENAGKMEEYVEEKE 278
+L + F + +++ EE+
Sbjct: 242 SELQSLRPDFSSKLMGYDTFDQFTEERR 269
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 207 bits (529), Expect = 4e-61
Identities = 56/261 (21%), Positives = 108/261 (41%), Gaps = 21/261 (8%)
Query: 642 ELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGR 701
EL + +SN ++ F + L P VL ++ I + + I G
Sbjct: 18 ELLEKVQ---QSNGDRKHSSDENNVSFSHLCLVGNP----VLKNINLNIEKGEMLAITGS 70
Query: 702 TGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL 761
TG+GK+S+L + +E G I G + Q + GT++ N+
Sbjct: 71 TGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQFSWIMPGTIKENI 117
Query: 762 DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 821
+ + ++ L+ I + + + + E G S GQR +SL+RA+ + +
Sbjct: 118 IFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDA 177
Query: 822 KILVLDEATAAVDVRT-DALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 880
+ +LD +DV T + + + + + + T +++ ++ + D+IL+L G
Sbjct: 178 DLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYF 237
Query: 881 YDTPEELLSNEGSSFSKMVQS 901
Y T EL S SK++
Sbjct: 238 YGTFSELQSLRPDFSSKLMGY 258
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 140 bits (354), Expect = 5e-38
Identities = 49/236 (20%), Positives = 108/236 (45%), Gaps = 12/236 (5%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
+K E++ R+ ++ L+ TI + + ++G +G GK++ L + + E GRI
Sbjct: 7 VKLENLTKRFGNF--TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 64
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDA 784
D+ L + + ++ QS ++ TV N+ + E +R + A
Sbjct: 65 FGDRDVTY--LPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRV--RWA 120
Query: 785 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 844
L ++ ++ S GQRQ ++++RA++ +L++DE + +D + ++
Sbjct: 121 AEL--LQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAE 178
Query: 845 IRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSK 897
I++ + T + + H + DRI +++ G++L+ +P E+ S F
Sbjct: 179 IKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVA 234
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 109 bits (275), Expect = 2e-27
Identities = 51/238 (21%), Positives = 101/238 (42%), Gaps = 38/238 (15%)
Query: 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 100
+ + N + + +NL I G + ++G +G GKT+ + + G P ++
Sbjct: 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP-TEG 61
Query: 101 SAVIRGT-----------VAYVPQVSWIF-NATVRDNILFGSAFE-------PARYEKAI 141
++ V Q ++ + TV +NI F + R A
Sbjct: 62 RIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 121
Query: 142 DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 201
++ ++ L+ P +SGGQ+QRV++ARA+ DV + D+PLS LDA
Sbjct: 122 ELLQIEELLNRYPA-----------QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 170
Query: 202 VGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 256
+ + + ++ +L T + VT+ + DRI +++ G + + G+ ++
Sbjct: 171 LRVAMRAEIKKLQQKL-KVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 227
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 138 bits (349), Expect = 1e-37
Identities = 50/237 (21%), Positives = 96/237 (40%), Gaps = 28/237 (11%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
++ +DV R L LS + + + +VG GAGKS++L + + +G I
Sbjct: 4 MQLQDVAESTR------LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQ 56
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSP-VLFSGTVRFNLDPF-SEHSDADLWEALERAHLKD 783
G + + L + Q F+ V L + + +L + A
Sbjct: 57 FAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGA---- 112
Query: 784 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR-------RSKILVLDEATAAVDVR 836
L LD ++ + S G+ Q + L+ +L+ ++L+LDE ++DV
Sbjct: 113 ------LALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVA 166
Query: 837 TDALIQKTIRE-EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 891
+ + K + + +++ +H LN + R LL G++L EE+L+
Sbjct: 167 QQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP 223
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 91.9 bits (228), Expect = 3e-21
Identities = 43/227 (18%), Positives = 78/227 (34%), Gaps = 33/227 (14%)
Query: 55 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP----------PVSDASAV- 103
AE L ++ ++ G ++ +VG G GK++L++ M G P+ SA
Sbjct: 10 AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATK 69
Query: 104 IRGTVAYVPQVSWI-FNATVRDNILFG--SAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 160
+ AY+ Q F V + +L L
Sbjct: 70 LALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTN----- 124
Query: 161 IGERGVNISGGQKQRVSMARAVYS-------NSDVFIFDDPLSALDAHVGRQVFDRCIRG 213
+SGG+ QRV +A V + + D+P+++LD +
Sbjct: 125 ------QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 178
Query: 214 ELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNNGEL 259
G V+ ++ L+ + R L+ G + G E++ L
Sbjct: 179 CQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNL 225
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 138 bits (348), Expect = 3e-37
Identities = 60/241 (24%), Positives = 118/241 (48%), Gaps = 13/241 (5%)
Query: 666 IKFEDVVLRYRPELPPV--LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 723
IK ++ + + L+ +S +P G++G +GAGKS+++ + + G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 724 ILIDGFDIAKFGLMD---LRKILGIIPQSPVLF-SGTVRFNLDPFSEHSDADLWEALERA 779
+L+DG ++ + R+ +G+I Q L S TV N+ E + E R
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 780 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 839
+ + +GL + N S GQ+Q ++++RAL K+L+ DEAT+A+D T
Sbjct: 122 --TELLSL--VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTR 177
Query: 840 LIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 896
I + +++ T+L+I H ++ + CD + ++ +G ++E DT E+ S+ + +
Sbjct: 178 SILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLA 237
Query: 897 K 897
+
Sbjct: 238 Q 238
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 102 bits (256), Expect = 6e-25
Identities = 52/241 (21%), Positives = 99/241 (41%), Gaps = 37/241 (15%)
Query: 42 ISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-- 98
I + N + L N++L +P G + ++G +G GK++LI + P
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 99 -------------DASAVIRGTVAYVPQ-VSWIFNATVRDNILFGSAFE-------PARY 137
R + + Q + + + TV N+ + R
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 138 EKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSA 197
+ + + L D P N+SGGQKQRV++ARA+ SN V + D+ SA
Sbjct: 122 TELLSLVGLGDKHDSYPS-----------NLSGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 198 LDAHVGRQVFDRCIR-GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSN 255
LD R + + G T +L+T+++ + ++ D + ++ G + E+ T ++ +
Sbjct: 171 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230
Query: 256 N 256
+
Sbjct: 231 H 231
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 132 bits (334), Expect = 2e-35
Identities = 53/235 (22%), Positives = 112/235 (47%), Gaps = 10/235 (4%)
Query: 664 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 723
G++ +D+ R + +L G+SF I + G++G GAGK++ L + +++ G
Sbjct: 1 GAVVVKDLRKRIGKK--EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
Query: 724 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLK 782
+ + G ++ ++RK++ +P+ + L + + E E +
Sbjct: 59 VTVFGKNV-VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMV--E 115
Query: 783 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 842
A GL ++ + +S G + L ++RAL+ ++ +LDE T+ +DV ++
Sbjct: 116 RATEI--AGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVR 173
Query: 843 KTIREEFKSC-TMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 895
K +++ + T+L+ +H + + CDRI L+ +G ++E T EEL +
Sbjct: 174 KILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQN 228
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 105 bits (264), Expect = 5e-26
Identities = 50/251 (19%), Positives = 105/251 (41%), Gaps = 40/251 (15%)
Query: 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-- 98
A+ +++ ++ L I+ +I G + ++G G GKT+ + + + P S
Sbjct: 2 AVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
Query: 99 ---------DASAVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEP-------ARYEKAI 141
+ +R ++Y+P+ + + N + + F + F E+A
Sbjct: 59 VTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERAT 118
Query: 142 DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 201
++ L + S G +++ +ARA+ N + I D+P S LD
Sbjct: 119 EIAGLGEKIKDRVST-----------YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVL 167
Query: 202 VGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN---- 256
R+V + G T ++ ++ + + + DRI L+H G + E GT E+L
Sbjct: 168 NAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQ 227
Query: 257 --GELFQKLME 265
E+F+++++
Sbjct: 228 NIEEVFEEVVK 238
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 132 bits (334), Expect = 4e-35
Identities = 57/242 (23%), Positives = 106/242 (43%), Gaps = 22/242 (9%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
+ D+ RY VL G+S D + I+G +G+GKS+ L + + + G I+
Sbjct: 3 LHVIDLHKRYGGH--EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 60
Query: 726 IDGFDIAKFGLMD-------------LRKILGIIPQSPVLFSG-TVR-FNLDPFSEHSDA 770
++G +I D LR L ++ Q L+S TV ++ +
Sbjct: 61 VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGL 120
Query: 771 DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 830
+A ERA + + + AQ S GQ+Q +S++RAL +L+ DE T
Sbjct: 121 SKHDARERA--LKYLAKVGIDERAQGKYPVH-LSGGQQQRVSIARALAMEPDVLLFDEPT 177
Query: 831 AAVDVRTDALIQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 888
+A+D + + +++ + TM+++ H + ++ L G++ E PE++
Sbjct: 178 SALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVF 237
Query: 889 SN 890
N
Sbjct: 238 GN 239
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 104 bits (261), Expect = 2e-25
Identities = 52/244 (21%), Positives = 99/244 (40%), Gaps = 36/244 (14%)
Query: 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--- 98
+ + + + + L ++L G +++I+G +G GK++ + + P
Sbjct: 3 LHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 99 ----------------------DASAVIRGTVAYVPQ-VSWIFNATVRDNILFGSAFEPA 135
+ ++R + V Q + + TV +N++
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119
Query: 136 RYEKAID--VTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 193
+ + + +SGGQ+QRVS+ARA+ DV +FD+
Sbjct: 120 LSKHDARERALKYLAKVGIDERAQGKYPVH----LSGGQQQRVSIARALAMEPDVLLFDE 175
Query: 194 PLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFED 252
P SALD + +V + GKT V+VT+++ F V +I +H+G ++EEG E
Sbjct: 176 PTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQ 235
Query: 253 LSNN 256
+ N
Sbjct: 236 VFGN 239
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 129 bits (326), Expect = 2e-34
Identities = 55/232 (23%), Positives = 102/232 (43%), Gaps = 17/232 (7%)
Query: 666 IKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 723
IK ++V Y E+ L ++ I + V I+G +G+GKS+MLN + + + G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 724 ILIDGFDIAKFGLMDLRKI----LGIIPQSPVLFSG-TVRFNLD---PFSEHSDADLWEA 775
+ ID +L KI +G + Q L T N++ F E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 776 LERAHLKDAIRRNSLGLDAQVSEA-GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 834
+RA + L+ + + S GQ+Q ++++RAL I++ D+ T A+D
Sbjct: 122 RKRALECLKM----AELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALD 177
Query: 835 VRTDALIQKTIREEFKS--CTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTP 884
+T I + +++ + T++++ H +N +RI+ L G V +
Sbjct: 178 SKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 112 bits (281), Expect = 2e-28
Identities = 52/228 (22%), Positives = 102/228 (44%), Gaps = 21/228 (9%)
Query: 42 ISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-- 98
I ++N ++ E L N+NL+I G V+I+G +G GK+++++ + P
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 99 --------------DASAVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDV 143
+ + + R + +V Q + T +N+ F+ +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 144 TSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 203
+ + + + +SGGQ+QRV++ARA+ +N + + D P ALD+ G
Sbjct: 122 RKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTG 181
Query: 204 RQVFD--RCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 249
++ + + E GKT V+VT+ ++ +RII + +G V+ E
Sbjct: 182 EKIMQLLKKLNEED-GKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 123 bits (311), Expect = 3e-32
Identities = 56/238 (23%), Positives = 104/238 (43%), Gaps = 15/238 (6%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
++ E++V + L G+S ++ D I+G G+GKS+++N + ++ + GR+
Sbjct: 5 LRTENIVKYFGEF--KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 62
Query: 726 IDGFDIAKFGLMDL-RKILGIIPQSPVLFSG-TVRFNL----DPFSEHSDADLWEALERA 779
+ DI +L + Q+P TV NL E L+
Sbjct: 63 FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP 122
Query: 780 HLKDAIRR-----NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 834
++ + + L L S GQ +L+ + RAL+ K++V+DE A V
Sbjct: 123 KEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVA 182
Query: 835 VRTDALIQKTIRE-EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890
I + E + K T LII HRL+ +++ D + ++ +G+++ EE + N
Sbjct: 183 PGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 240
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 100 bits (250), Expect = 4e-24
Identities = 38/219 (17%), Positives = 88/219 (40%), Gaps = 24/219 (10%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-------------DASAVIRGTV 108
+++ + G + I+G G GK++LI+ + G L + + + +
Sbjct: 22 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81
Query: 109 AYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHD--------LDLLPGGDVT 159
Q TV +N+L G ++ +L ++
Sbjct: 82 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS 141
Query: 160 EIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK 218
+ +R +SGGQ + V + RA+ +N + + D+P++ + + +F+ + + G
Sbjct: 142 HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGI 201
Query: 219 TRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 256
T +++ ++L + D + ++ G + EG E+ N
Sbjct: 202 TFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 240
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 121 bits (305), Expect = 1e-31
Identities = 43/234 (18%), Positives = 100/234 (42%), Gaps = 14/234 (5%)
Query: 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 724
++ DV + + +S + + + ++G +G GK++ L + + E RG+I
Sbjct: 3 GVRLVDVWKVFGEV--TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 725 LIDGFDIAKFGLMDLRKI----LGIIPQSPVLFSGTVRF-NLDPFSEHSDADLWEALERA 779
I +A + ++ QS L+ + N+ + E +R
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120
Query: 780 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 839
++ LGL ++ S GQRQ ++L RA++R+ ++ ++DE + +D +
Sbjct: 121 --REVAEL--LGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRV 176
Query: 840 LIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890
++ +++ T + + H + DRI +++ G + + +P+E+
Sbjct: 177 RMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 93.1 bits (231), Expect = 1e-21
Identities = 48/232 (20%), Positives = 101/232 (43%), Gaps = 20/232 (8%)
Query: 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 100
+ + + + + E + ++L++ G + ++G +G GKT+ + + G P S
Sbjct: 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP-SRG 58
Query: 101 SAVIRGTV-------AYVPQVSWIFNATVRDNILF------GSAFEPARYEKAIDVTSLQ 147
I + +VP + L+ + P + K Q
Sbjct: 59 QIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQ 118
Query: 148 HDLDLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 206
++ +TE+ R +SGGQ+QRV++ RA+ VF+ D+PLS LDA + ++
Sbjct: 119 RVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRM 178
Query: 207 FDRCIR-GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 256
+ G T + VT+ + DRI +++ G++++ G+ +++ +
Sbjct: 179 RAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 120 bits (301), Expect = 5e-31
Identities = 48/232 (20%), Positives = 109/232 (46%), Gaps = 14/232 (6%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
++ + + + Y + G+ +P V ++G GAGK++ L+ + +V ++G+I+
Sbjct: 7 LEVQSLHVYYGAI--HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
Query: 726 IDGFDIAKFGLMDLRKI-LGIIPQSPVLFSG-TVRFNL--DPFSEHSDADLWEALERAHL 781
+G DI + ++ + ++P+ +F TV NL ++ + LE
Sbjct: 65 FNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFS 124
Query: 782 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 841
L ++ + G S G++Q+L++ RAL+ R K+L++DE + + + +
Sbjct: 125 L------FPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178
Query: 842 QKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 891
+ I++ + T+L++ + +L++G+++ ELL NE
Sbjct: 179 FEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNE 230
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 104 bits (262), Expect = 9e-26
Identities = 43/210 (20%), Positives = 82/210 (39%), Gaps = 19/210 (9%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP--------------VSDASAVIRGT 107
I+L +P G +V ++G G GKT+ +SA+ G + G
Sbjct: 24 GIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83
Query: 108 VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN 167
TV +N++ G+ + D+ + L + + G
Sbjct: 84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKE----RLKQLGGT 139
Query: 168 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL 227
+SGG++Q +++ RA+ S + + D+P L + +VF+ + G T +LV
Sbjct: 140 LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA 199
Query: 228 HFLSQV-DRIILVHEGMVKEEGTFEDLSNN 256
+V ++ G + EG +L +N
Sbjct: 200 LGALKVAHYGYVLETGQIVLEGKASELLDN 229
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 119 bits (299), Expect = 8e-31
Identities = 48/236 (20%), Positives = 94/236 (39%), Gaps = 12/236 (5%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
++ ++V + V ++ I + V VG +G GKS++L + + + G +
Sbjct: 1 VQLQNVTKAWGEV--VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 58
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRF-NLDPFSEHSDADLWEALERAHLKDA 784
I + + +G++ QS L+ N+ + + A +R
Sbjct: 59 IGEKRMN--DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRV--NQV 114
Query: 785 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 844
L L + + S GQRQ +++ R L+ + +LDE + +D ++
Sbjct: 115 AEV--LQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIE 172
Query: 845 IRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSK 897
I + TM+ + H + D+I++LD+GRV + P EL F
Sbjct: 173 ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVA 228
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 97.7 bits (243), Expect = 2e-23
Identities = 60/235 (25%), Positives = 102/235 (43%), Gaps = 34/235 (14%)
Query: 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----- 96
+ ++N +W E +INLDI G V VG +G GK++L+ + G
Sbjct: 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 97 -----VSDASAVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEP-------ARYEKAIDV 143
+ + V V Q ++ + +V +N+ FG R + +V
Sbjct: 58 FIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEV 117
Query: 144 TSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 203
L H LD P +SGGQ+QRV++ R + + VF+ D+PLS LDA +
Sbjct: 118 LQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALR 166
Query: 204 RQVFDRCIRG-ELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 256
Q+ R + G+T + VT+ + D+I+++ G V + G +L +
Sbjct: 167 VQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 117 bits (294), Expect = 2e-30
Identities = 46/214 (21%), Positives = 91/214 (42%), Gaps = 27/214 (12%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
++ D+ + Y PVL ++ TI + V G G GK+++L T+ ++ +G I+
Sbjct: 3 LEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 59
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEH-----SDADLWEALERA 779
+G I ++ + +P+ ++ +V L + + ++ +ALE
Sbjct: 60 YNGVPI-----TKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV 114
Query: 780 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 839
+ D ++ S G + + L+ LL ++I VLD+ A+D +
Sbjct: 115 EVLDLKKK------------LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKH 162
Query: 840 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLL 873
+ K+I E K ++II+ R CD L
Sbjct: 163 KVLKSILEILKEKGIVIISSREELSY-CDVNENL 195
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 104 bits (260), Expect = 6e-26
Identities = 45/208 (21%), Positives = 93/208 (44%), Gaps = 21/208 (10%)
Query: 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 101
+ IR+ +D +P L I + I G++V G G GKT+L+ + L P+
Sbjct: 3 LEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 102 AV-------IRGTVAYVPQ-VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLL 153
++G + ++P+ + +V D + ++ + K +D L
Sbjct: 59 IYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNK-------NEIMDAL 111
Query: 154 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG 213
+V ++ ++ +S G +RV +A + N+++++ DDP+ A+D +V I
Sbjct: 112 ESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKS-ILE 170
Query: 214 ELSGKTRVLVTNQLHFLSQVDRIILVHE 241
L K V+++++ LS D +H+
Sbjct: 171 ILKEKGIVIISSR-EELSYCDVNENLHK 197
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 112 bits (282), Expect = 1e-28
Identities = 57/240 (23%), Positives = 102/240 (42%), Gaps = 24/240 (10%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
I+ E + +++ L LS + + I+G TGAGK+ L + + GRIL
Sbjct: 2 IEIESLSRKWKNF---SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-----TVRFNLDPFSEHSDADLWEALERAH 780
+DG D+ L + + + Q+ LF + F + + +
Sbjct: 59 LDGKDVTD--LSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLK 116
Query: 781 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 840
++ + RN L L S G++Q ++L+RAL+ KIL+LDE +A+D RT
Sbjct: 117 IEHLLDRNPLTL-----------SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQEN 165
Query: 841 IQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSK 897
++ + + T+L I H DRI ++ G++++ PEE+
Sbjct: 166 AREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVA 225
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 93.6 bits (232), Expect = 7e-22
Identities = 56/232 (24%), Positives = 100/232 (43%), Gaps = 32/232 (13%)
Query: 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 101
I I + W + + L N++L + G I+G TG GKT + + G P S
Sbjct: 2 IEIESLSRKWKNFS----LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 102 AVI----------RGTVAYVPQVSWIF-NATVRDNILF----GSAFEPARYEKAIDVTSL 146
+ + +A+V Q +F + V+ N+ F +P R +
Sbjct: 58 LLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKI 117
Query: 147 QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 206
+H LD P + +SGG++QRV++ARA+ +N + + D+PLSALD
Sbjct: 118 EHLLDRNP-----------LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENA 166
Query: 207 FDRCIR-GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 256
+ + + T + +T+ + DRI +V +G + + G E++
Sbjct: 167 REMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 110 bits (277), Expect = 7e-28
Identities = 49/232 (21%), Positives = 106/232 (45%), Gaps = 11/232 (4%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
I ++V ++ L ++ I ++ GI+G +GAGK++ + + + G +
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 726 IDGFDIAKFGLMDLRKI---LGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHL 781
D +A G + + +G++ Q+ L+ T N+ + E +R
Sbjct: 64 FDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV-- 121
Query: 782 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 841
++ + L + ++ S Q+Q ++L+RAL++ +L+LDE + +D R
Sbjct: 122 EEVAKI--LDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSA 179
Query: 842 QKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890
+ ++E T+L+++H I DR+ +L G++++ PE+L N
Sbjct: 180 RALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 87.1 bits (215), Expect = 2e-19
Identities = 54/241 (22%), Positives = 97/241 (40%), Gaps = 37/241 (15%)
Query: 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-- 98
I ++N + K + L N+N++I G I+G +G GKT+ + + G P +
Sbjct: 3 RIIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 99 -------------DASAVIRGTVAYVPQ-VSWIFNATVRDNILFG-------SAFEPARY 137
+ V Q + N T +NI F R
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 138 EKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSA 197
E+ + + H L+ P +SG Q+QRV++ARA+ + + + D+P S
Sbjct: 122 EEVAKILDIHHVLNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 198 LDAHVGRQVFDRCIR-GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSN 255
LDA + G T ++V++ + + DR+ ++ +G + + G EDL +
Sbjct: 171 LDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230
Query: 256 N 256
N
Sbjct: 231 N 231
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 95.9 bits (238), Expect = 1e-22
Identities = 54/210 (25%), Positives = 97/210 (46%), Gaps = 15/210 (7%)
Query: 686 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745
+ F + D ++G TGAGKS L + IV+ +RG + ++G DI L R+ +G
Sbjct: 18 VDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITP--LPPERRGIGF 74
Query: 746 IPQSPVLFSGTVRF--NLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENF 803
+PQ LF + + + K LG+ +
Sbjct: 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEK-------LGIAHLLDRKPARL 127
Query: 804 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRL 861
S G+RQ ++L+RAL+ + ++L+LDE +AVD++T ++ + +R +L + H L
Sbjct: 128 SGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL 187
Query: 862 NTIID-CDRILLLDSGRVLEYDTPEELLSN 890
D + ++ +GR++E +EL S
Sbjct: 188 IEAAMLADEVAVMLNGRIVEKGKLKELFSA 217
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 81.6 bits (201), Expect = 8e-18
Identities = 47/215 (21%), Positives = 91/215 (42%), Gaps = 32/215 (14%)
Query: 61 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDASAVIRGTVA 109
LN++ ++ ++G TG GK+ + + G + P ++ RG +
Sbjct: 16 LNVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRG-IG 73
Query: 110 YVPQVSWIFNA-TVRDNILFGSAFEPA-----RYEKAIDVTSLQHDLDLLPGGDVTEIGE 163
+VPQ +F +V NI +G R + + + H LD P
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA-------- 125
Query: 164 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-GELSGKTRVL 222
+SGG++QRV++ARA+ + + D+PLSA+D + + +
Sbjct: 126 ---RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILH 182
Query: 223 VTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 256
VT+ L + + D + ++ G + E+G ++L +
Sbjct: 183 VTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 79.3 bits (194), Expect = 2e-17
Identities = 18/186 (9%), Positives = 44/186 (23%), Gaps = 28/186 (15%)
Query: 695 KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFS 754
K+ I G G GK++++ + + + + +I+ + + S
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSS 61
Query: 755 GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 814
S + +E +
Sbjct: 62 KFFTSKKLVGSYGVNVQYFE----------------------------ELAIPILERAYR 93
Query: 815 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLD 874
A R K++++DE + ++ + I L
Sbjct: 94 EAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLP 153
Query: 875 SGRVLE 880
++E
Sbjct: 154 GAVLIE 159
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 53.1 bits (126), Expect = 2e-08
Identities = 21/193 (10%), Positives = 40/193 (20%), Gaps = 21/193 (10%)
Query: 73 VAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAF 132
+ I G G GKT+L+ ++ L A V +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGK--RAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 133 EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFD 192
+ + + A V I D
Sbjct: 61 S--------------KFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIID 106
Query: 193 DPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFED 252
+ + R I + V V I + ++ E
Sbjct: 107 EIGKMELFSKKFRDLVRQIMHD-PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTP--- 162
Query: 253 LSNNGELFQKLME 265
N + + ++
Sbjct: 163 -ENRDVILEDILS 174
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.6 bits (117), Expect = 3e-07
Identities = 20/171 (11%), Positives = 53/171 (30%), Gaps = 7/171 (4%)
Query: 696 VGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG 755
V + G G GK+++++ +++ + + + G + + + + S
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSR 63
Query: 756 TVRFNLDPFS------EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 809
D +E L L++A + G V + + +
Sbjct: 64 VGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQL 123
Query: 810 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHR 860
+ R L ++L + AL+++ + + +R
Sbjct: 124 FIQAVRQTLSTPGTIILGTIPVPKG-KPLALVEEIRNRKDVKVFNVTKENR 173
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 44.1 bits (102), Expect = 5e-05
Identities = 36/327 (11%), Positives = 98/327 (29%), Gaps = 18/327 (5%)
Query: 329 FKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYS 388
+ + YK + + ++ + + + + Y D +
Sbjct: 6 LQFVKPYK------YRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHL 59
Query: 389 LLSFGQVLVTLA---------NSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGR 439
++ G L Y +S + + + + F+ N +G+
Sbjct: 60 TIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQ 119
Query: 440 IINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYL 499
+I+R D+ + + ++ ++ + A + + +
Sbjct: 120 VISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVY 179
Query: 500 YYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLV 559
+ R++ R S + V E + G+S ++++ D A K + L
Sbjct: 180 VFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239
Query: 560 NMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTA 619
+ N + + V + + A + T+ + Y + L
Sbjct: 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYL---AISGSITVGTLAAFVGYLELLFGPLRR 296
Query: 620 VLRLASLAENSLNAVERVGNYIELPSE 646
++ + S +++RV I+ +
Sbjct: 297 LVASFTTLTQSFASMDRVFQLIDEDYD 323
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 43.8 bits (101), Expect = 7e-05
Identities = 28/318 (8%), Positives = 91/318 (28%), Gaps = 7/318 (2%)
Query: 329 FKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYS 388
+ ++ +K +++ + L + L D KT +
Sbjct: 8 WPTIAPFK------AGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLV 61
Query: 389 LLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDL 448
++ + + IS + + + ++
Sbjct: 62 VIGLMILRGITSYISSYCISWVSGKVVMTMRR-RLFGHMMGMPVAFFDKQSTGTLLSRIT 120
Query: 449 GDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREV 508
D ++ + + V + S L ++ S + L++L + + ++
Sbjct: 121 YDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRF 180
Query: 509 KRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLA 568
+ + ++ + A L + + + + + L M +
Sbjct: 181 RSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASS 240
Query: 569 IRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAE 628
I I+ + A + + A T+ ++ S + + L ++ + + +
Sbjct: 241 ISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQ 300
Query: 629 NSLNAVERVGNYIELPSE 646
+ A + + ++ E
Sbjct: 301 RGMAACQTLFAILDSEQE 318
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Score = 37.0 bits (84), Expect = 0.004
Identities = 13/19 (68%), Positives = 14/19 (73%)
Query: 695 KVGIVGRTGAGKSSMLNTL 713
KV I GR AGKSS+LN L
Sbjct: 3 KVVIAGRPNAGKSSLLNAL 21
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1050 | |||
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.88 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.82 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.77 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.74 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.55 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.35 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.27 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.11 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.04 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.98 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.84 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.78 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.62 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.53 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.69 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.46 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.42 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.42 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.08 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.54 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.29 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.27 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.22 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.07 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.98 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.97 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 95.96 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.93 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 95.77 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.75 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.75 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.67 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.67 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.66 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 95.65 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.59 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 95.58 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.5 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.44 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.4 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.32 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.3 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.27 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.26 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.26 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.24 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.18 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.14 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 95.12 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.09 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.03 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.02 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.0 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.0 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.0 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 94.97 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.94 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 94.92 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 94.91 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.87 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.87 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 94.85 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 94.74 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.71 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 94.66 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.57 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.55 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.5 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 94.43 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 94.39 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 94.36 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 94.35 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 94.34 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 94.27 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 94.27 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 94.25 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 94.18 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 94.17 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 94.16 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 94.15 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.13 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 94.1 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 94.07 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 94.06 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 94.02 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.98 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.95 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 93.94 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 93.88 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 93.8 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 93.79 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 93.78 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.78 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 93.75 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 93.73 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 93.7 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 93.69 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 93.63 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 93.59 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 93.5 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 93.5 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 93.48 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 93.4 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 93.4 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 93.34 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 93.31 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 93.29 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 93.27 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 93.24 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 93.19 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 93.14 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 93.13 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 93.13 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 93.13 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 93.08 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 93.05 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 93.03 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 92.98 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 92.92 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 92.9 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 92.87 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 92.83 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 92.83 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 92.82 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 92.81 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 92.81 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 92.76 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 92.73 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 92.72 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 92.67 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 92.65 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 92.56 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 92.55 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 92.53 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 92.49 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.43 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 92.41 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 92.39 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 92.38 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.38 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 92.38 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 92.36 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 92.34 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 92.34 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 92.33 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 92.31 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 92.31 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 92.27 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 92.25 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 92.22 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 92.15 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 92.11 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 92.11 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 92.09 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 92.09 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 91.99 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 91.98 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 91.97 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 91.93 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 91.88 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 91.85 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 91.8 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.79 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 91.78 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 91.76 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 91.76 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 91.73 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.69 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 91.63 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.58 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 91.56 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 91.53 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 91.52 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 91.52 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 91.48 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 91.46 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 91.41 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 91.36 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 91.31 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 91.31 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.27 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 91.25 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 91.24 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 91.23 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 91.21 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 91.18 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 91.17 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 91.13 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 91.12 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 91.07 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 91.06 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 91.04 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 91.01 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 90.99 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 90.97 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 90.96 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 90.93 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 90.86 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 90.77 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 90.64 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 90.56 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 90.5 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 90.42 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 90.37 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 90.36 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 90.35 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 90.35 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 90.33 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 90.32 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 90.28 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 90.26 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 90.24 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 90.22 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 90.21 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 90.2 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 90.19 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 90.15 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 90.06 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 90.03 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 89.96 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 89.94 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 89.92 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 89.91 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 89.76 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 89.72 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 89.66 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 89.59 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 89.58 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 89.57 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 89.56 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 89.54 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 89.54 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 89.5 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 89.44 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 89.37 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 89.35 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 89.31 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 89.26 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.22 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 89.2 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 89.19 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 89.19 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 89.12 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.06 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 89.04 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 88.96 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 88.94 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 88.93 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 88.85 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 88.81 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 88.7 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 88.69 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 88.69 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 88.6 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 88.59 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 88.51 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 88.49 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 88.45 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 88.45 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 88.42 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 88.41 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 88.39 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 88.35 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 88.33 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 88.33 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 88.29 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 88.29 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 88.28 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 88.21 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 88.17 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 88.12 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 88.12 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 88.09 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 88.05 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 88.05 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 88.0 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 87.99 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 87.96 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 87.94 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 87.94 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 87.92 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 87.89 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 87.88 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 87.85 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 87.81 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 87.76 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 87.66 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 87.59 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 87.59 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 87.52 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 87.44 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 87.42 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 87.42 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 87.36 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 87.33 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 87.31 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 87.28 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 87.27 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 87.26 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 87.22 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 87.18 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 87.16 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 87.14 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 87.13 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 87.12 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 87.06 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 87.04 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 86.96 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 86.94 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 86.85 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 86.8 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 86.78 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 86.74 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 86.7 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 86.69 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 86.69 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 86.66 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 86.6 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 86.57 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 86.56 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 86.54 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 86.54 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 86.54 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 86.53 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 86.52 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 86.52 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 86.35 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 86.34 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 86.31 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 86.28 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 86.2 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 86.15 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 86.12 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 86.11 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 86.09 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 86.02 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 85.94 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 85.92 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 85.89 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 85.74 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 85.74 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 85.63 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 85.56 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 85.56 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 85.54 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 85.51 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 85.41 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 85.33 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 85.31 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 85.28 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 85.27 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 85.2 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 85.12 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 85.12 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 85.09 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 84.94 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 84.93 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 84.78 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 84.74 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 84.7 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 84.62 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 84.6 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 84.59 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 84.54 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 84.54 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 84.53 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 84.49 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 84.49 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 84.36 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 84.35 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 84.3 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 84.03 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 83.93 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 83.86 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 83.86 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 83.71 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 83.68 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 83.6 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 83.31 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 83.3 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 83.29 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 83.26 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 83.14 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 83.12 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 83.1 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 83.03 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 82.73 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 82.72 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 82.69 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 82.68 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 82.6 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 82.57 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 82.53 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 82.36 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 82.19 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 82.17 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 82.14 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 82.13 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 82.08 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 81.92 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 81.62 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 81.6 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 81.54 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 81.28 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 81.07 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 80.89 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 80.88 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 80.79 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 80.73 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 80.65 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 80.37 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 80.18 |
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=446.89 Aligned_cols=236 Identities=34% Similarity=0.552 Sum_probs=225.6
Q ss_pred EEEEEEEEEECCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEEE
Q ss_conf 89998999948999981000238963996999997999998899999840466886289998960689895887521278
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~~GaGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~ 745 (1050)
|+|+||+|+|++..+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.|+..++...+|++++|
T Consensus 2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (241)
T d2pmka1 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV 81 (241)
T ss_dssp EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred EEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEEEE
T ss_conf 29999999908999603742489984999999999999989999999973578888899999999440024655352889
Q ss_pred ECCCCCCCCCCHHHHCCCCCC-CCHHHHHHHHHHHCHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEE
Q ss_conf 767765566447770466999-9988999999993089999872599403630299999945999999999970399899
Q 001580 746 IPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 824 (1050)
Q Consensus 746 v~Q~~~lf~~tv~~nl~~~~~-~~~~~~~~~~~~~~l~~~i~~~p~gl~t~v~e~~~~LSgGqkqrl~lArall~~p~il 824 (1050)
|||++.+|++||++|+.++.+ ..+++++++++.+++.+++..+|.|+++.+++.|.+|||||||||+||||++++|+||
T Consensus 82 v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~il 161 (241)
T d2pmka1 82 VLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKIL 161 (241)
T ss_dssp ECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSEE
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHH
T ss_conf 82446557840003522357554388899999997557888763201344327878866988989875443444165135
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHH
Q ss_conf 98466748899989999999998738948998505810365319899995977998439367851389817999996
Q 001580 825 VLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 901 (1050)
Q Consensus 825 lLDEpts~lD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~ 901 (1050)
||||||++||+.+++.+++.|+++.+++|+|+|||+++.+..||+|++|++|+|++.|+|+|+++++.+.|..+++.
T Consensus 162 ilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~ 238 (241)
T d2pmka1 162 IFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238 (241)
T ss_dssp EECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHH
T ss_conf 56477655598999999999999858998999978899998499999998999999889999982998789999998
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=445.23 Aligned_cols=238 Identities=34% Similarity=0.575 Sum_probs=225.6
Q ss_pred CCCCEEEEEEEEEECCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHH
Q ss_conf 87568999899994899998100023896399699999799999889999984046688628999896068989588752
Q 001580 662 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 741 (1050)
Q Consensus 662 ~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~~GaGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~ 741 (1050)
.+|.|+++||+|+|++..+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.|++.++...+|+
T Consensus 13 ~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~ 92 (255)
T d2hyda1 13 KQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRN 92 (255)
T ss_dssp CSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred CCCEEEEEEEEEEECCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHHH
T ss_conf 78879999889995999976064438998399899998899980999999997127863000153998753078888634
Q ss_pred HEEEECCCCCCCCCCHHHHCCCCCC-CCHHHHHHHHHHHCHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 1278767765566447770466999-998899999999308999987259940363029999994599999999997039
Q 001580 742 ILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 820 (1050)
Q Consensus 742 ~i~~v~Q~~~lf~~tv~~nl~~~~~-~~~~~~~~~~~~~~l~~~i~~~p~gl~t~v~e~~~~LSgGqkqrl~lArall~~ 820 (1050)
+++||||++.+|++||++|+.++.+ .++++++++++.+++.+++..+|.|++|.+++.|.+||||||||++||||++++
T Consensus 93 ~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~ 172 (255)
T d2hyda1 93 QIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNN 172 (255)
T ss_dssp TEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 14565101568998799998515867999999999999697999973624201033388898499999999999998559
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHH
Q ss_conf 98999846674889998999999999873894899850581036531989999597799843936785138981799999
Q 001580 821 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 900 (1050)
Q Consensus 821 p~illLDEpts~lD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~ 900 (1050)
|+||||||||++||+.++..+++.|.++.+++|+|+|||+++.+..||+|++|++|+|++.|+|+||+++. +.|..++.
T Consensus 173 p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~-~~y~~l~~ 251 (255)
T d2hyda1 173 PPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQ-GAYEHLYS 251 (255)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTT-SHHHHHHT
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCC-CHHHHHHH
T ss_conf 98999837654479779999999999875388899996899999859999999899999988999998688-49999999
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=440.55 Aligned_cols=239 Identities=36% Similarity=0.571 Sum_probs=225.8
Q ss_pred CCCCEEEEEEEEEECCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHH
Q ss_conf 87568999899994899998100023896399699999799999889999984046688628999896068989588752
Q 001580 662 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 741 (1050)
Q Consensus 662 ~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~~GaGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~ 741 (1050)
..|.|+|+||+|+|++...++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+++...+|+
T Consensus 10 ~~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 89 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 89 (253)
T ss_dssp CCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CCEEEEEEEEEEEECCCCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 83079999889992999976353328998599999999999985999999986216888468987880121110665420
Q ss_pred HEEEECCCCCCCCCCHHHHCCCCC--CCCHHHHHHHHHHHCHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 127876776556644777046699--999889999999930899998725994036302999999459999999999703
Q 001580 742 ILGIIPQSPVLFSGTVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 819 (1050)
Q Consensus 742 ~i~~v~Q~~~lf~~tv~~nl~~~~--~~~~~~~~~~~~~~~l~~~i~~~p~gl~t~v~e~~~~LSgGqkqrl~lArall~ 819 (1050)
+++|+||++.+|++|+++|+.++. ..++++++++++.+++.++++.+|.|+++.+++.+.+|||||||||+|||||++
T Consensus 90 ~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~ 169 (253)
T d3b60a1 90 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 169 (253)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 68799502544786202433205722089999999999981799997355441014348889849999999999999954
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHH
Q ss_conf 99899984667488999899999999987389489985058103653198999959779984393678513898179999
Q 001580 820 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 899 (1050)
Q Consensus 820 ~p~illLDEpts~lD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~ 899 (1050)
+|+||||||||++||+.++..+++.|+++.+++|+|+||||++.+..||+|++|++|+|++.|+|+||+++. +.|..++
T Consensus 170 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~-~~y~~l~ 248 (253)
T d3b60a1 170 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQH-GVYAQLH 248 (253)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHT-SSHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCC-CHHHHHH
T ss_conf 998899516444589889999999998752278899998879999859999999899999988999998689-3999999
Q ss_pred HH
Q ss_conf 96
Q 001580 900 QS 901 (1050)
Q Consensus 900 ~~ 901 (1050)
..
T Consensus 249 ~~ 250 (253)
T d3b60a1 249 KM 250 (253)
T ss_dssp HH
T ss_pred HH
T ss_conf 97
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=432.19 Aligned_cols=238 Identities=29% Similarity=0.479 Sum_probs=220.5
Q ss_pred CCCCEEEEEEEEEECCC-CCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHH
Q ss_conf 87568999899994899-99810002389639969999979999988999998404668862899989606898958875
Q 001580 662 SSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 740 (1050)
Q Consensus 662 ~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~~GaGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r 740 (1050)
.+|.|+|+||+|+|+.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.|+..++...+|
T Consensus 8 ~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r 87 (251)
T d1jj7a_ 8 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLH 87 (251)
T ss_dssp CCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHH
T ss_pred CCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHHH
T ss_conf 53369999989988999999767443899849989999999998499999998614378768998899853110137888
Q ss_pred HHEEEECCCCCCCCCCHHHHCCCCC--CCCHHHHHHHHHHHCHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 2127876776556644777046699--99988999999993089999872599403630299999945999999999970
Q 001580 741 KILGIIPQSPVLFSGTVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 818 (1050)
Q Consensus 741 ~~i~~v~Q~~~lf~~tv~~nl~~~~--~~~~~~~~~~~~~~~l~~~i~~~p~gl~t~v~e~~~~LSgGqkqrl~lArall 818 (1050)
++++||||+|.+|++|+++|+.++. .....++.+++..+++.++++.+|.|+++.+++.+.+||||||||++||||++
T Consensus 88 ~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~ 167 (251)
T d1jj7a_ 88 RQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALI 167 (251)
T ss_dssp HHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECCC
T ss_conf 77654045650027634655454210130278899999999899999856121113675167668954704899860445
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHH
Q ss_conf 39989998466748899989999999998738--9489985058103653198999959779984393678513898179
Q 001580 819 RRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFS 896 (1050)
Q Consensus 819 ~~p~illLDEpts~lD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~ 896 (1050)
++|+||||||||++||+.++..+++.|+++.+ ++|+|+||||++.+..||||++|++|+|++.|+|+||+++. +.|.
T Consensus 168 ~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~-~~y~ 246 (251)
T d1jj7a_ 168 RKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKK-GCYW 246 (251)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHT-SHHH
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCC-CHHH
T ss_conf 687078716757656853689999999997650698999995979999859999999899999988999998597-5889
Q ss_pred HHHH
Q ss_conf 9999
Q 001580 897 KMVQ 900 (1050)
Q Consensus 897 ~~~~ 900 (1050)
.+++
T Consensus 247 ~l~~ 250 (251)
T d1jj7a_ 247 AMVQ 250 (251)
T ss_dssp HHHC
T ss_pred HHHC
T ss_conf 9962
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=434.90 Aligned_cols=234 Identities=33% Similarity=0.563 Sum_probs=219.4
Q ss_pred EEEEEEEEEECCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEEE
Q ss_conf 89998999948999981000238963996999997999998899999840466886289998960689895887521278
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~~GaGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~ 745 (1050)
|+++||+|+|++. +++|+||||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.+++...+|++|+|
T Consensus 2 le~knvsf~Y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEECCCC-CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEEE
T ss_conf 7999889987999-841422589985999999999999979999999999609898779889988442467888743679
Q ss_pred ECCCCCCCCCCHHHHCCCCC--CCCHHHHHHHHHHHCHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 76776556644777046699--9998899999999308999987259940363029999994599999999997039989
Q 001580 746 IPQSPVLFSGTVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 823 (1050)
Q Consensus 746 v~Q~~~lf~~tv~~nl~~~~--~~~~~~~~~~~~~~~l~~~i~~~p~gl~t~v~e~~~~LSgGqkqrl~lArall~~p~i 823 (1050)
|||++.+|++|+++|+.++. ...+++++++++.+.+.+++..+|.++++.+++.|.+|||||||||+||||++++|+|
T Consensus 81 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~i 160 (242)
T d1mv5a_ 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (242)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred ECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 75665457853454301244555423567789999975554203742101523687898799999999999998529989
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHH
Q ss_conf 998466748899989999999998738948998505810365319899995977998439367851389817999996
Q 001580 824 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 901 (1050)
Q Consensus 824 llLDEpts~lD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~ 901 (1050)
|||||||++||+.++..+++.|+++.+++|+|+|||+++.+..||+|++|++|+|++.|+|+||+++. +.|.+++..
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~-~~y~~l~~~ 237 (242)
T d1mv5a_ 161 LMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATH-PLYAKYVSE 237 (242)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHC-HHHHHHHHC
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCC-HHHHHHHHH
T ss_conf 99658865569889999988788871799899997879999849999999899999999999998689-699999999
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=398.80 Aligned_cols=230 Identities=31% Similarity=0.484 Sum_probs=208.1
Q ss_pred CCCCCCCCEEEEEEEEEECCCCCCCCEEECEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEE----------
Q ss_conf 9999999189994899828999998311000886099799999599982899999997398999887067----------
Q 001580 34 PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------- 103 (1050)
Q Consensus 34 ~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isL~i~~Ge~valvG~nGSGKSTLl~~L~G~~~~~~G~~~~---------- 103 (1050)
|.......|+++|++|+|+.. ++++|+||||++++|+++||+|+||||||||+++|+|+++|++|.+.+
T Consensus 9 pl~~~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~ 87 (255)
T d2hyda1 9 PIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLT 87 (255)
T ss_dssp CCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCH
T ss_pred CCCCCCCEEEEEEEEEEECCC-CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCH
T ss_conf 777778879999889995999-9760644389983998999988999809999999971278630001539987530788
Q ss_pred --EECCEEEEECCCCCCCCCHHHHHCCCCC-CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf --7092899924787876348998614999-9988999999980937898409999963125799877978999999999
Q 001580 104 --IRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 180 (1050)
Q Consensus 104 --~~~~Ig~v~Q~~~L~~~TV~enI~~g~~-~~~~~~~~~~~~~~L~~~i~~l~~g~~t~ig~~g~~LSGGQKqRiaLAR 180 (1050)
++..|+||||+|++|++||+|||.+|.+ ...++..++++.+.+.+.+..+|.|+.|.++++|.+|||||||||+|||
T Consensus 88 ~~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iAR 167 (255)
T d2hyda1 88 GSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIAR 167 (255)
T ss_dssp HHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHH
T ss_pred HHHHHEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHH
T ss_conf 88634145651015689987999985158679999999999996979999736242010333888984999999999999
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHCCEEEEECCCEEEECCCHHHHHCCHHHH
Q ss_conf 87029989999397888598999999999970015994899951591214212978997598484405724330282899
Q 001580 181 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELF 260 (1050)
Q Consensus 181 AL~~~~~IllLDEpts~LD~~s~~~i~~~ll~~~~~~~T~IlvTH~l~~l~~aD~I~vL~~G~i~~~g~~~eL~~~~~~~ 260 (1050)
||+.+|+|++||||||+||+.++..+++.+ ....+++|+|+|||+++.+..||+|++|++|++++.|++++|.++.+.|
T Consensus 168 al~~~p~ililDEpts~LD~~t~~~i~~~l-~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~~~y 246 (255)
T d2hyda1 168 IFLNNPPILILDEATSALDLESESIIQEAL-DVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAY 246 (255)
T ss_dssp HHHHCCSEEEEESTTTTCCHHHHHHHHHHH-HHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHH
T ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHH-HHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHH
T ss_conf 985599899983765447977999999999-9875388899996899999859999999899999988999998688499
Q ss_pred HHHHH
Q ss_conf 99999
Q 001580 261 QKLME 265 (1050)
Q Consensus 261 ~~~~~ 265 (1050)
+.++.
T Consensus 247 ~~l~~ 251 (255)
T d2hyda1 247 EHLYS 251 (255)
T ss_dssp HHHHT
T ss_pred HHHHH
T ss_conf 99999
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=396.10 Aligned_cols=224 Identities=29% Similarity=0.460 Sum_probs=204.7
Q ss_pred CEEEEEEEEEECCCCCCCCEEECEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEE------------EECCE
Q ss_conf 189994899828999998311000886099799999599982899999997398999887067------------70928
Q 001580 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 108 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~~~L~~isL~i~~Ge~valvG~nGSGKSTLl~~L~G~~~~~~G~~~~------------~~~~I 108 (1050)
.|+|+|++|+|+. ..+++|+||||++++|++++|+|+||||||||+++|+|+++|++|.+.+ ++..|
T Consensus 1 eI~~~nvsf~Y~~-~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKP-DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESST-TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CEEEEEEEEEECC-CCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEE
T ss_conf 9299999999089-996037424899849999999999999899999999735788888999999994400246553528
Q ss_pred EEEECCCCCCCCCHHHHHCCCCC-CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99924787876348998614999-99889999999809378984099999631257998779789999999998702998
Q 001580 109 AYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 187 (1050)
Q Consensus 109 g~v~Q~~~L~~~TV~enI~~g~~-~~~~~~~~~~~~~~L~~~i~~l~~g~~t~ig~~g~~LSGGQKqRiaLARAL~~~~~ 187 (1050)
+||||+|++|++||+|||.++.+ .+.+++..+++.+.+.+.+..+|.++.+.+++.|.+|||||||||+|||||+++|+
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ 159 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 89824465578400035223575543888999999975578887632013443278788669889898754434441651
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHCCEEEEECCCEEEECCCHHHHHCC-HHHHHHHHHH
Q ss_conf 999939788859899999999997001599489995159121421297899759848440572433028-2899999998
Q 001580 188 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN-GELFQKLMEN 266 (1050)
Q Consensus 188 IllLDEpts~LD~~s~~~i~~~ll~~~~~~~T~IlvTH~l~~l~~aD~I~vL~~G~i~~~g~~~eL~~~-~~~~~~~~~~ 266 (1050)
|+|||||||+||+.+++.|++.+ +...+++|+|+|||+++.+..||+|++|++|++++.|+++++.++ .+.|..++..
T Consensus 160 ililDEpts~LD~~~~~~i~~~l-~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~ 238 (241)
T d2pmka1 160 ILIFDEATSALDYESEHVIMRNM-HKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238 (241)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHH-HHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHH-HHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHH
T ss_conf 35564776555989999999999-99858998999978899998499999998999999889999982998789999998
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=391.99 Aligned_cols=225 Identities=31% Similarity=0.497 Sum_probs=206.1
Q ss_pred CCEEEEEEEEEECCCCCCCCEEECEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEE------------EECC
Q ss_conf 9189994899828999998311000886099799999599982899999997398999887067------------7092
Q 001580 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 107 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~~~~~L~~isL~i~~Ge~valvG~nGSGKSTLl~~L~G~~~~~~G~~~~------------~~~~ 107 (1050)
..|+++|++|+|+.. +.++|+||||+|++|+++||+|+||||||||+++|+|+++|++|.+.+ ++..
T Consensus 12 g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 90 (253)
T d3b60a1 12 GDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ 90 (253)
T ss_dssp CCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHT
T ss_pred EEEEEEEEEEEECCC-CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHE
T ss_conf 079999889992999-9763533289985999999999999859999999862168884689878801211106654206
Q ss_pred EEEEECCCCCCCCCHHHHHCCCC--CCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 89992478787634899861499--9998899999998093789840999996312579987797899999999987029
Q 001580 108 VAYVPQVSWIFNATVRDNILFGS--AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 185 (1050)
Q Consensus 108 Ig~v~Q~~~L~~~TV~enI~~g~--~~~~~~~~~~~~~~~L~~~i~~l~~g~~t~ig~~g~~LSGGQKqRiaLARAL~~~ 185 (1050)
|+||||+|++|++|+++|+.++. ..+.+++.++++.+++.+.+..+|.|+.+.+++.+.+|||||||||+|||||+.+
T Consensus 91 i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~ 170 (253)
T d3b60a1 91 VALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRD 170 (253)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 87995025447862024332057220899999999999817999973554410143488898499999999999999549
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHCCEEEEECCCEEEECCCHHHHHCCHHHHHHHHH
Q ss_conf 98999939788859899999999997001599489995159121421297899759848440572433028289999999
Q 001580 186 SDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 265 (1050)
Q Consensus 186 ~~IllLDEpts~LD~~s~~~i~~~ll~~~~~~~T~IlvTH~l~~l~~aD~I~vL~~G~i~~~g~~~eL~~~~~~~~~~~~ 265 (1050)
|+|++||||||+||+.+++.+++.+ +...+++|+|+|||+++.+..||+|++|++|++++.|+++++.++.+.|+.+++
T Consensus 171 p~ililDEpts~LD~~~~~~i~~~l-~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~~~y~~l~~ 249 (253)
T d3b60a1 171 SPILILDEATSALDTESERAIQAAL-DELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHK 249 (253)
T ss_dssp CSEEEEETTTSSCCHHHHHHHHHHH-HHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHHHH
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHH-HHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHHHH
T ss_conf 9889951644458988999999999-875227889999887999985999999989999998899999868939999999
Q ss_pred H
Q ss_conf 8
Q 001580 266 N 266 (1050)
Q Consensus 266 ~ 266 (1050)
.
T Consensus 250 ~ 250 (253)
T d3b60a1 250 M 250 (253)
T ss_dssp H
T ss_pred H
T ss_conf 7
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=388.75 Aligned_cols=224 Identities=25% Similarity=0.409 Sum_probs=202.4
Q ss_pred CEEEEEEEEEECCCCCCCCEEECEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEE------------EECCE
Q ss_conf 189994899828999998311000886099799999599982899999997398999887067------------70928
Q 001580 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 108 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~~~L~~isL~i~~Ge~valvG~nGSGKSTLl~~L~G~~~~~~G~~~~------------~~~~I 108 (1050)
.|+++|++|+|+...+.++|+||||++++|++++|+|+||||||||+++|+|+++|++|.+.+ .+..|
T Consensus 11 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 90 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQV 90 (251)
T ss_dssp CEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHE
T ss_pred EEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHHHHHH
T ss_conf 69999989988999999767443899849989999999998499999998614378768998899853110137888776
Q ss_pred EEEECCCCCCCCCHHHHHCCCCCC--CHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 999247878763489986149999--988999999980937898409999963125799877978999999999870299
Q 001580 109 AYVPQVSWIFNATVRDNILFGSAF--EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 186 (1050)
Q Consensus 109 g~v~Q~~~L~~~TV~enI~~g~~~--~~~~~~~~~~~~~L~~~i~~l~~g~~t~ig~~g~~LSGGQKqRiaLARAL~~~~ 186 (1050)
+||+|+|++|++||+|||.+|... .......+.+.+.+...+..+|.++.+.+++.+.+|||||||||+|||||+.+|
T Consensus 91 ~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~p 170 (251)
T d1jj7a_ 91 AAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKP 170 (251)
T ss_dssp EEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTCC
T ss_pred HHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECCCCCC
T ss_conf 54045650027634655454210130278899999999899999856121113675167668954704899860445687
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCC-CCCCEEEEECCCCCHHHHCCEEEEECCCEEEECCCHHHHHCCHHHHHHHH
Q ss_conf 8999939788859899999999997001-59948999515912142129789975984844057243302828999999
Q 001580 187 DVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 264 (1050)
Q Consensus 187 ~IllLDEpts~LD~~s~~~i~~~ll~~~-~~~~T~IlvTH~l~~l~~aD~I~vL~~G~i~~~g~~~eL~~~~~~~~~~~ 264 (1050)
+|++||||||+||+.+++.+++.+.... ..++|+|+|||+++.+..||+|++|++|+++++|++++|.++.+.|..++
T Consensus 171 ~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~~~y~~l~ 249 (251)
T d1jj7a_ 171 CVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWAMV 249 (251)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHH
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHHH
T ss_conf 0787167576568536899999999976506989999959799998599999998999999889999985975889996
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=391.45 Aligned_cols=223 Identities=26% Similarity=0.486 Sum_probs=203.1
Q ss_pred CEEEEEEEEEECCCCCCCCEEECEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEE------------EECCE
Q ss_conf 189994899828999998311000886099799999599982899999997398999887067------------70928
Q 001580 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 108 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~~~L~~isL~i~~Ge~valvG~nGSGKSTLl~~L~G~~~~~~G~~~~------------~~~~I 108 (1050)
+|+++|++|+|+. .+++|+||||++++|+++||+|+||||||||+++|+|.++|++|.+.+ ++..|
T Consensus 1 mle~knvsf~Y~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 78 (242)
T d1mv5a_ 1 MLSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQI 78 (242)
T ss_dssp CEEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTC
T ss_pred CEEEEEEEEECCC--CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHE
T ss_conf 9799988998799--98414225899859999999999999799999999996098987798899884424678887436
Q ss_pred EEEECCCCCCCCCHHHHHCCCCC--CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99924787876348998614999--9988999999980937898409999963125799877978999999999870299
Q 001580 109 AYVPQVSWIFNATVRDNILFGSA--FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 186 (1050)
Q Consensus 109 g~v~Q~~~L~~~TV~enI~~g~~--~~~~~~~~~~~~~~L~~~i~~l~~g~~t~ig~~g~~LSGGQKqRiaLARAL~~~~ 186 (1050)
|||||+|++|++||+||+.++.. .......++.+.+.+...+..+|.+..+.++++|.+|||||||||+|||||+.+|
T Consensus 79 ~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p 158 (242)
T d1mv5a_ 79 GFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNP 158 (242)
T ss_dssp CEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 79756654578534543012445554235677899999755542037421015236878987999999999999985299
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHCCEEEEECCCEEEECCCHHHHHCCHHHHHHHHHH
Q ss_conf 89999397888598999999999970015994899951591214212978997598484405724330282899999998
Q 001580 187 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 266 (1050)
Q Consensus 187 ~IllLDEpts~LD~~s~~~i~~~ll~~~~~~~T~IlvTH~l~~l~~aD~I~vL~~G~i~~~g~~~eL~~~~~~~~~~~~~ 266 (1050)
+|++||||||+||+.+++.+++.+ +...+++|+|+|||+++.+..||+|++|++|++++.|++++|.++.+.|..++..
T Consensus 159 ~ililDEpts~LD~~~~~~i~~~l-~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~~~y~~l~~~ 237 (242)
T d1mv5a_ 159 KILMLDEATASLDSESESMVQKAL-DSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSE 237 (242)
T ss_dssp SEEEEECCSCSSCSSSCCHHHHHH-HHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHHHC
T ss_pred CEEEECCCCCCCCHHHHHHHHHHH-HHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCHHHHHHHHH
T ss_conf 899965886556988999998878-8871799899997879999849999999899999999999998689699999999
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=371.62 Aligned_cols=221 Identities=21% Similarity=0.348 Sum_probs=191.8
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEE
Q ss_conf 68999899994899998100023896399699999799999889999984046688628999896068989588752127
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 744 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~~GaGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~ 744 (1050)
.|+++|++++|++. .+|+||||++++||++||+||||||||||+++|.|+++|++|+|.++|.++.+.++ .+++||
T Consensus 6 ~I~v~nlsk~yg~~--~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~--~~r~ig 81 (239)
T d1v43a3 6 EVKLENLTKRFGNF--TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPP--KDRNIS 81 (239)
T ss_dssp CEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG--GGGTEE
T ss_pred EEEEEEEEEEECCE--EEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCC--CCCEEE
T ss_conf 49998799999999--99813067887998999999999829999999975899987879991641354770--001589
Q ss_pred EECCCCCCCCC-CHHHHCCCCCC---CCHHHHHHHHHHHCHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 87677655664-47770466999---998899999999308999987259940363029999994599999999997039
Q 001580 745 IIPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 820 (1050)
Q Consensus 745 ~v~Q~~~lf~~-tv~~nl~~~~~---~~~~~~~~~~~~~~l~~~i~~~p~gl~t~v~e~~~~LSgGqkqrl~lArall~~ 820 (1050)
||||++.+|.. ||++|+.+... .+..++.+. +.+.++. .|++...+.....||||||||++|||||+.+
T Consensus 82 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~--~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~ 154 (239)
T d1v43a3 82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKR-----VRWAAEL--LQIEELLNRYPAQLSGGQRQRVAVARAIVVE 154 (239)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHH-----HHHHHHH--TTCGGGTTSCTTTCCSSCHHHHHHHHHHTTC
T ss_pred EEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHH-----HHHHHHH--CCCHHHHCCCHHHCCHHHHHHHHHHHHHCCC
T ss_conf 98003353422209999999998739999999999-----9999987--5985566099546999998899997664049
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHHCCCCHHH
Q ss_conf 98999846674889998999999999873-8-9489985058103653-198999959779984393678513898179
Q 001580 821 SKILVLDEATAAVDVRTDALIQKTIREEF-K-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 896 (1050)
Q Consensus 821 p~illLDEpts~lD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~~ 896 (1050)
|+||+|||||++||+.+...+++.|+++. . ++|+|+|||+++++.. ||||++|++|++++.|+++++..++...|.
T Consensus 155 P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~~~ 233 (239)
T d1v43a3 155 PDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFV 233 (239)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHH
T ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHH
T ss_conf 9824306886668989998999999999873198079994899999986999999989999998599999868999899
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=372.40 Aligned_cols=216 Identities=22% Similarity=0.343 Sum_probs=187.8
Q ss_pred EEEEEEEEEECCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEEE
Q ss_conf 89998999948999981000238963996999997999998899999840466886289998960689895887521278
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~~GaGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~ 745 (1050)
|+++||+++|++. .+|+|+||++++||++||+||||||||||+++|.|+++|++|+|.++|.++.+.++ .|+.|||
T Consensus 1 Iev~nv~k~yg~~--~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~--~~r~ig~ 76 (232)
T d2awna2 1 VQLQNVTKAWGEV--VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP--AERGVGM 76 (232)
T ss_dssp EEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCG--GGTCEEE
T ss_pred CEEEEEEEEECCE--EEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCH--HHCEEEE
T ss_conf 9999999998999--99811177886998999998999829999999965878888889999997788864--4432223
Q ss_pred ECCCCCCCCC-CHHHHCCCCCCC---C----HHHHHHHHHHHCHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 7677655664-477704669999---9----8899999999308999987259940363029999994599999999997
Q 001580 746 IPQSPVLFSG-TVRFNLDPFSEH---S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 817 (1050)
Q Consensus 746 v~Q~~~lf~~-tv~~nl~~~~~~---~----~~~~~~~~~~~~l~~~i~~~p~gl~t~v~e~~~~LSgGqkqrl~lAral 817 (1050)
|||++.+|.. ||++|+.+.... . ++++.+.++..++.++.++. ...||||||||++|||||
T Consensus 77 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~-----------~~~LSGGqkQRvaiAraL 145 (232)
T d2awna2 77 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRK-----------PKALSGGQRQRVAIGRTL 145 (232)
T ss_dssp ECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHHH
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCC-----------HHHCCHHHHHHHHHHHHH
T ss_conf 433420264333788978999875998899999999999757886566489-----------656999999999999997
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHHCCCCH
Q ss_conf 03998999846674889998999999999873--89489985058103653-1989999597799843936785138981
Q 001580 818 LRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSS 894 (1050)
Q Consensus 818 l~~p~illLDEpts~lD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~ 894 (1050)
+.+|++|+|||||++||+.+...+++.|+++. .+.|+|++||+++++.. |||+++|++|++++.|+++|+..++...
T Consensus 146 ~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~ 225 (232)
T d2awna2 146 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADR 225 (232)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBH
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHCCCCH
T ss_conf 03998899758887889889989999999998742987999948999999969999999799999980899997389997
Q ss_pred HH
Q ss_conf 79
Q 001580 895 FS 896 (1050)
Q Consensus 895 ~~ 896 (1050)
|.
T Consensus 226 ~v 227 (232)
T d2awna2 226 FV 227 (232)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=375.80 Aligned_cols=214 Identities=24% Similarity=0.375 Sum_probs=188.5
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEE
Q ss_conf 68999899994899998100023896399699999799999889999984046688628999896068989588752127
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 744 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~~GaGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~ 744 (1050)
.+.|+|+++ .+ .|+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| +++
T Consensus 38 ~i~~~~~~~--~g--~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~i~ 100 (281)
T d1r0wa_ 38 NVSFSHLCL--VG--NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVS 100 (281)
T ss_dssp --CHHHHHH--TT--CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------CEE
T ss_pred CEEEEECCC--CC--CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------------EEE
T ss_conf 679997698--99--7677375999859999999989998299999999579747882899999-------------999
Q ss_pred EECCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEE
Q ss_conf 87677655664477704669999988999999993089999872599403630299999945999999999970399899
Q 001580 745 IIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 824 (1050)
Q Consensus 745 ~v~Q~~~lf~~tv~~nl~~~~~~~~~~~~~~~~~~~l~~~i~~~p~gl~t~v~e~~~~LSgGqkqrl~lArall~~p~il 824 (1050)
|+||++++|++|+++|+.++....+.+++++++.+.+...+..+|.++++.+++.+.+|||||||||+|||||+++|+||
T Consensus 101 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~il 180 (281)
T d1r0wa_ 101 FCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLY 180 (281)
T ss_dssp EECSSCCCCSEEHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEE
T ss_pred EEECCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCH
T ss_conf 98164302676032142033345605799999997769999846123323555542377999999999999998696351
Q ss_pred EEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHH
Q ss_conf 98466748899989999999-9987389489985058103653198999959779984393678513898179
Q 001580 825 VLDEATAAVDVRTDALIQKT-IREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFS 896 (1050)
Q Consensus 825 lLDEpts~lD~~~~~~i~~~-l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~ 896 (1050)
||||||++||+.++..+++. +.....++|+|+|||+++.+..||||++|++|++++.|+|+||++.. +.|.
T Consensus 181 lLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~-~~~~ 252 (281)
T d1r0wa_ 181 LLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLR-PDFS 252 (281)
T ss_dssp EEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHC-HHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCCC-CHHH
T ss_conf 33385544898999999999998862899999992528999859999999899999987899996059-4899
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=369.76 Aligned_cols=214 Identities=25% Similarity=0.370 Sum_probs=186.9
Q ss_pred EEEEEEEEEECCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEEE
Q ss_conf 89998999948999981000238963996999997999998899999840466886289998960689895887521278
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~~GaGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~ 745 (1050)
|+++|++++|+. .+|+||||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++.+.++. |+.+||
T Consensus 2 i~v~nlsk~y~~---~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig~ 76 (229)
T d3d31a2 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAF 76 (229)
T ss_dssp EEEEEEEEECSS---CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCEE
T ss_pred EEEEEEEEEECC---EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HHCCEE
T ss_conf 899989999499---788433789879989999989998299999999647688878899956734652165--740561
Q ss_pred ECCCCCCCCC-CHHHHCCCC----CCCCHHHHHHHHHHHCHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 7677655664-477704669----99998899999999308999987259940363029999994599999999997039
Q 001580 746 IPQSPVLFSG-TVRFNLDPF----SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 820 (1050)
Q Consensus 746 v~Q~~~lf~~-tv~~nl~~~----~~~~~~~~~~~~~~~~l~~~i~~~p~gl~t~v~e~~~~LSgGqkqrl~lArall~~ 820 (1050)
|||++.+|.. ||+||+.+. .....+++.++++..++ ..........||||||||++|||||+.+
T Consensus 77 v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSGG~~QRvaiAraL~~~ 145 (229)
T d3d31a2 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKI-----------EHLLDRNPLTLSGGEQQRVALARALVTN 145 (229)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTC-----------TTTTTSCGGGSCHHHHHHHHHHHHTTSC
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCC-----------HHHHHCCHHHCCHHHHCCHHHHHHHHCC
T ss_conf 51211117466577888887764055389999999998256-----------5557589554799984014030434436
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHHCCCCHH
Q ss_conf 98999846674889998999999999873--89489985058103653-19899995977998439367851389817
Q 001580 821 SKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 895 (1050)
Q Consensus 821 p~illLDEpts~lD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~ 895 (1050)
|++|||||||++||+.+...+++.|+++. .+.|+|++||+++++.. ||||++|++|++++.|+++|+.+++...+
T Consensus 146 P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~~ 223 (229)
T d3d31a2 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (229)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHH
T ss_conf 771443478767998999999999999986479689997499999999699999997999999869999986899879
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=370.86 Aligned_cols=218 Identities=37% Similarity=0.677 Sum_probs=197.3
Q ss_pred CEEEEEEEEEECCCCCCCCEEECEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEECCEEEEECCCCCCCC
Q ss_conf 18999489982899999831100088609979999959998289999999739899988706770928999247878763
Q 001580 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNA 120 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~~~L~~isL~i~~Ge~valvG~nGSGKSTLl~~L~G~~~~~~G~~~~~~~~Ig~v~Q~~~L~~~ 120 (1050)
.|.++|++| ..+|+|+||||+|++|+++||+|+||||||||+++|+|+++|++|.+ .+.|.|+||||++|+|.+
T Consensus 38 ~i~~~~~~~-----~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I-~~~g~i~~v~Q~~~l~~~ 111 (281)
T d1r0wa_ 38 NVSFSHLCL-----VGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII-KHSGRVSFCSQFSWIMPG 111 (281)
T ss_dssp --CHHHHHH-----TTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEE-ECCSCEEEECSSCCCCSE
T ss_pred CEEEEECCC-----CCCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-EECCEEEEEECCCCCCCC
T ss_conf 679997698-----99767737599985999999998999829999999957974788289-999999998164302676
Q ss_pred CHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCH
Q ss_conf 48998614999998899999998093789840999996312579987797899999999987029989999397888598
Q 001580 121 TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 200 (1050)
Q Consensus 121 TV~enI~~g~~~~~~~~~~~~~~~~L~~~i~~l~~g~~t~ig~~g~~LSGGQKqRiaLARAL~~~~~IllLDEpts~LD~ 200 (1050)
||+|||.+|..++..++..+++.+.+..++..++.++.+.+++.+.+|||||||||+|||||+.+|+|++|||||++||+
T Consensus 112 tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~ 191 (281)
T d1r0wa_ 112 TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 191 (281)
T ss_dssp EHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCH
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCH
T ss_conf 03214203334560579999999776999984612332355554237799999999999999869635133385544898
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHCCEEEEECCCEEEECCCHHHHHCCHHHHHHHH
Q ss_conf 9999999999700159948999515912142129789975984844057243302828999999
Q 001580 201 HVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 264 (1050)
Q Consensus 201 ~s~~~i~~~ll~~~~~~~T~IlvTH~l~~l~~aD~I~vL~~G~i~~~g~~~eL~~~~~~~~~~~ 264 (1050)
.+++.+++.++.....++|+|+|||+++.+..||+|++|++|++++.|+++++.+..+.|....
T Consensus 192 ~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~~~~~~~~ 255 (281)
T d1r0wa_ 192 FTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKL 255 (281)
T ss_dssp HHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCCCCHHHHHH
T ss_conf 9999999999988628999999925289998599999998999999878999960594899987
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=372.52 Aligned_cols=219 Identities=20% Similarity=0.318 Sum_probs=186.7
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH----HH
Q ss_conf 68999899994899998100023896399699999799999889999984046688628999896068989588----75
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD----LR 740 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~~GaGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~----~r 740 (1050)
.|+++||+++|++. ++|+||||++++||++||+||||||||||+++|.|+++|++|+|.++|.++...+... .|
T Consensus 3 ~i~v~nl~k~yg~~--~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~ 80 (240)
T d1g2912 3 GVRLVDVWKVFGEV--TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (240)
T ss_dssp EEEEEEEEEEETTE--EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred CEEEEEEEEEECCE--EEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCCC
T ss_conf 18998699998999--9985606688699899999999980999999996487889898999999803566444245322
Q ss_pred HHEEEECCCCCCCCC-CHHHHCCCC---CCCCHH----HHHHHHHHHCHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHH
Q ss_conf 212787677655664-477704669---999988----999999993089999872599403630299999945999999
Q 001580 741 KILGIIPQSPVLFSG-TVRFNLDPF---SEHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 812 (1050)
Q Consensus 741 ~~i~~v~Q~~~lf~~-tv~~nl~~~---~~~~~~----~~~~~~~~~~l~~~i~~~p~gl~t~v~e~~~~LSgGqkqrl~ 812 (1050)
+.+|||||++.+|.. ||.+|+.+. ...... ++.+.++.+++ ..........||||||||++
T Consensus 81 r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l-----------~~~~~~~p~~LSGGqkQRv~ 149 (240)
T d1g2912 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGL-----------TELLNRKPRELSGGQRQRVA 149 (240)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTC-----------GGGTTCCGGGSCHHHHHHHH
T ss_pred CCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC-----------HHHHCCCHHHCCHHHHHHHH
T ss_conf 5512002212223101166763306877299989999999999987599-----------66762993349999999999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 9999703998999846674889998999999999873-8-9489985058103653-19899995977998439367851
Q 001580 813 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-K-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889 (1050)
Q Consensus 813 lArall~~p~illLDEpts~lD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 889 (1050)
|||||+.+|++|+|||||++||+.+...+++.|+++. . +.|+|+|||+++++.. ||||++|++|++++.|+++|+..
T Consensus 150 IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 150 LGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp HHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 99998269988982588765698999899999999986369889999599999999699999998999999859999982
Q ss_pred CCCCHHH
Q ss_conf 3898179
Q 001580 890 NEGSSFS 896 (1050)
Q Consensus 890 ~~~~~~~ 896 (1050)
++...|.
T Consensus 230 ~P~~~~~ 236 (240)
T d1g2912 230 KPANTFV 236 (240)
T ss_dssp SCSBHHH
T ss_pred CCCCHHH
T ss_conf 8999898
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=369.20 Aligned_cols=219 Identities=27% Similarity=0.441 Sum_probs=187.7
Q ss_pred EEEEEEEEEECCCCC--CCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH---HH
Q ss_conf 899989999489999--8100023896399699999799999889999984046688628999896068989588---75
Q 001580 666 IKFEDVVLRYRPELP--PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LR 740 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~--~~l~~isl~i~~Ge~~~ivG~~GaGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~---~r 740 (1050)
|+++|++++|+.+.. .+|+||||+|++||++||+||||||||||+++|.|+.+|++|+|.++|.++...+... +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred HHEEEECCCCCCCCC-CHHHHCCCC---CCCC----HHHHHHHHHHHCHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHH
Q ss_conf 212787677655664-477704669---9999----88999999993089999872599403630299999945999999
Q 001580 741 KILGIIPQSPVLFSG-TVRFNLDPF---SEHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 812 (1050)
Q Consensus 741 ~~i~~v~Q~~~lf~~-tv~~nl~~~---~~~~----~~~~~~~~~~~~l~~~i~~~p~gl~t~v~e~~~~LSgGqkqrl~ 812 (1050)
+++|||||++.+|.. ||++|+.+. .... ++++.+.++.+++.+ ........||||||||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~-----------~~~~~~~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD-----------KHDSYPSNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTT-----------TTSSCBSCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCH-----------HHHCCHHHCCHHHHHHHH
T ss_conf 166430225222799649999999999849998999999999999769903-----------554894349999998999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 9999703998999846674889998999999999873-8-9489985058103653-19899995977998439367851
Q 001580 813 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-K-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 889 (1050)
Q Consensus 813 lArall~~p~illLDEpts~lD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 889 (1050)
|||||+.+|++||+||||++||+.+...+++.|+++. + +.|+|+|||+++++.. ||||++|++|+|++.|+++|+.+
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 86401058986874465565898885679999999986469789998389999998699999997999999879999972
Q ss_pred CCCCHH
Q ss_conf 389817
Q 001580 890 NEGSSF 895 (1050)
Q Consensus 890 ~~~~~~ 895 (1050)
++...|
T Consensus 231 ~P~~~~ 236 (240)
T d3dhwc1 231 HPKTPL 236 (240)
T ss_dssp SSCCTT
T ss_pred CCCCHH
T ss_conf 899857
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=368.11 Aligned_cols=225 Identities=22% Similarity=0.351 Sum_probs=188.9
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC---HHHHHH
Q ss_conf 68999899994899998100023896399699999799999889999984046688628999896068989---588752
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LMDLRK 741 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~~GaGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~---~~~~r~ 741 (1050)
.|+++||+++|+.+...+|+||||++++||++||+||||||||||+++|.|+++|++|+|.++|.++...+ ....|+
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEEEEEEECCCCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHHC
T ss_conf 89997579998899989980407898799899999899980999999997586888745999999951373111531204
Q ss_pred HEEEECCCCCCCCC-CHHHHCCCCC---CCCHHHHHHHHHHHCHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 12787677655664-4777046699---9998899999999308999987259940363029999994599999999997
Q 001580 742 ILGIIPQSPVLFSG-TVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 817 (1050)
Q Consensus 742 ~i~~v~Q~~~lf~~-tv~~nl~~~~---~~~~~~~~~~~~~~~l~~~i~~~p~gl~t~v~e~~~~LSgGqkqrl~lAral 817 (1050)
++|||||++.+|+. ||+||+.+.. .....+..+. +.+.++. .|++.........||||||||++|||||
T Consensus 83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~-----v~~~l~~--~gL~~~~~~~p~~LSGGqkQRvaiARaL 155 (242)
T d1oxxk2 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR-----VEEVAKI--LDIHHVLNHFPRELSGAQQQRVALARAL 155 (242)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHH-----HHHHHHH--TTCGGGTTSCGGGSCHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHH-----HHHHHHH--CCHHHHHHCCHHHCCHHHHHHHHHHHHH
T ss_conf 51477304334666657777665567613799999999-----9999866--5917666489545999998589987577
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHHCCCCH
Q ss_conf 03998999846674889998999999999873-8-9489985058103653-1989999597799843936785138981
Q 001580 818 LRRSKILVLDEATAAVDVRTDALIQKTIREEF-K-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSS 894 (1050)
Q Consensus 818 l~~p~illLDEpts~lD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~ 894 (1050)
+.+|++|++||||++||+.+...+++.|+++. + +.|+|++||+++++.. ||||++|++|++++.|+++++..++...
T Consensus 156 ~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~P~~~ 235 (242)
T d1oxxk2 156 VKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSI 235 (242)
T ss_dssp TTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSH
T ss_pred HHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCH
T ss_conf 60466145447866799899889989999998635987999979999999969999999899999986999998689997
Q ss_pred HH
Q ss_conf 79
Q 001580 895 FS 896 (1050)
Q Consensus 895 ~~ 896 (1050)
|.
T Consensus 236 ~~ 237 (242)
T d1oxxk2 236 QV 237 (242)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=362.73 Aligned_cols=220 Identities=25% Similarity=0.344 Sum_probs=185.0
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCH--------
Q ss_conf 689998999948999981000238963996999997999998899999840466886289998960689895--------
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL-------- 736 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~~GaGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~-------- 736 (1050)
.|+++|++++|++. ++|+||||++++||++||+||||||||||+++|.|+++|++|+|.++|.++...+.
T Consensus 2 ~Lev~nl~k~yg~~--~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 79 (258)
T d1b0ua_ 2 KLHVIDLHKRYGGH--EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 79 (258)
T ss_dssp CEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred EEEEEEEEEEECCE--EEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCCC
T ss_conf 69999789998999--9881506688699799999899982999999997476678997799999933677520000235
Q ss_pred -----HHHHHHEEEECCCCCCCCC-CHHHHCCCC----CCCCHH----HHHHHHHHHCHHHHHHHCCCCCCHHHHCCCCC
Q ss_conf -----8875212787677655664-477704669----999988----99999999308999987259940363029999
Q 001580 737 -----MDLRKILGIIPQSPVLFSG-TVRFNLDPF----SEHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 802 (1050)
Q Consensus 737 -----~~~r~~i~~v~Q~~~lf~~-tv~~nl~~~----~~~~~~----~~~~~~~~~~l~~~i~~~p~gl~t~v~e~~~~ 802 (1050)
..+|+++|||||++.+|.. ||.+|+.++ ...... ++.++++.+++.+.. ......+
T Consensus 80 ~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~p~~ 149 (258)
T d1b0ua_ 80 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERA----------QGKYPVH 149 (258)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHH----------HTSCGGG
T ss_pred CHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHH----------HCCCCCC
T ss_conf 176799974544899833231411010213656578762999899999999999982995244----------3068220
Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHH-CCEEEEEECCEEEE
Q ss_conf 99459999999999703998999846674889998999999999873-89489985058103653-19899995977998
Q 001580 803 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 880 (1050)
Q Consensus 803 LSgGqkqrl~lArall~~p~illLDEpts~lD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~ 880 (1050)
|||||+||++|||||+.+|++|||||||++||+.+...+++.|+++. .+.|+|+||||++++.. ||||++|.+|+|++
T Consensus 150 LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~ 229 (258)
T d1b0ua_ 150 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 229 (258)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEEEE
T ss_conf 56778889899999843998788524555688788889987655410368833899489999998699999997999999
Q ss_pred ECCHHHHHHCCCCHHH
Q ss_conf 4393678513898179
Q 001580 881 YDTPEELLSNEGSSFS 896 (1050)
Q Consensus 881 ~g~~~el~~~~~~~~~ 896 (1050)
.|+++|++.++...|.
T Consensus 230 ~g~~~ev~~~P~~~~~ 245 (258)
T d1b0ua_ 230 EGDPEQVFGNPQSPRL 245 (258)
T ss_dssp EECHHHHHHSCCSHHH
T ss_pred ECCHHHHHHCCCCHHH
T ss_conf 8499999838999999
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=0 Score=356.70 Aligned_cols=219 Identities=21% Similarity=0.375 Sum_probs=184.0
Q ss_pred CCEEEEEEEEEECCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHH-H
Q ss_conf 568999899994899998100023896399699999799999889999984046688628999896068989588752-1
Q 001580 664 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK-I 742 (1050)
Q Consensus 664 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~~GaGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~-~ 742 (1050)
-.|+++|++++|++. .+|+||||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+....++ .
T Consensus 5 ~~Lev~~l~k~yg~~--~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 5 IVLEVQSLHVYYGAI--HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEEETTE--EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred EEEEEEEEEEEECCE--EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHC
T ss_conf 079996189998998--888302578889979999999998599999999678888803898424434466088888742
Q ss_pred EEEECCCCCCCCC-CHHHHCCCCC--CCCHHHHHHHHHHHCHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 2787677655664-4777046699--999889999999930899998725994036302999999459999999999703
Q 001580 743 LGIIPQSPVLFSG-TVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 819 (1050)
Q Consensus 743 i~~v~Q~~~lf~~-tv~~nl~~~~--~~~~~~~~~~~~~~~l~~~i~~~p~gl~t~v~e~~~~LSgGqkqrl~lArall~ 819 (1050)
++|+||++.+|.. |+++|+.+.. ....+...+.++.. ...+ .++.........+||||||||++|||||+.
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~ 156 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI-----FSLF-PRLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHH-----HHHC-HHHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHH-HCHHHHHHCCHHHCCHHHHHHHHHHHHHHH
T ss_conf 3556765545776369999998887327888999999999-----9874-176888758543389999999999999982
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 998999846674889998999999999873-89489985058103653-198999959779984393678513
Q 001580 820 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890 (1050)
Q Consensus 820 ~p~illLDEpts~lD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 890 (1050)
+|++|+|||||+|||+.+...+++.|+++. .++|+|++||+++++.. ||||++|++|++++.|+++|+.++
T Consensus 157 ~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 9987400398867999999999999999996899899995889999996999999989999998489998429
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.4e-45 Score=354.13 Aligned_cols=217 Identities=25% Similarity=0.348 Sum_probs=185.2
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHH-E
Q ss_conf 689998999948999981000238963996999997999998899999840466886289998960689895887521-2
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI-L 743 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~~GaGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~-i 743 (1050)
.|+++|++++|++. ++|+||||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...++...++. +
T Consensus 4 iL~v~nlsk~yg~~--~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi 81 (254)
T d1g6ha_ 4 ILRTENIVKYFGEF--KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81 (254)
T ss_dssp EEEEEEEEEEETTE--EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEEEEEEEECCE--EEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHCC
T ss_conf 69997789997996--8871217998899799999999984999999997797688737999999664056999998338
Q ss_pred EEECCCCCCCCC-CHHHHCCCCCC----------------CCHHHHHHHHHHHCHHHHHHHCCCCCCHHHHCCCCCCCHH
Q ss_conf 787677655664-47770466999----------------9988999999993089999872599403630299999945
Q 001580 744 GIIPQSPVLFSG-TVRFNLDPFSE----------------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVG 806 (1050)
Q Consensus 744 ~~v~Q~~~lf~~-tv~~nl~~~~~----------------~~~~~~~~~~~~~~l~~~i~~~p~gl~t~v~e~~~~LSgG 806 (1050)
+|+||++.+|.. ||.+|+.+... ..+.+.. ..+.+.++. .++.........+||||
T Consensus 82 ~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~--~~l~~~~~~~~~~LSgG 154 (254)
T d1g6ha_ 82 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMV-----EKAFKILEF--LKLSHLYDRKAGELSGG 154 (254)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHH-----HHHHHHHHH--TTCGGGTTSBGGGSCHH
T ss_pred CCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHH-----HHHHHHHHH--CCCCHHCCCCHHHCCCH
T ss_conf 72577642478874232143013330345045665421353289999-----999999876--19630205953569918
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCH
Q ss_conf 9999999999703998999846674889998999999999873-89489985058103653-198999959779984393
Q 001580 807 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 884 (1050)
Q Consensus 807 qkqrl~lArall~~p~illLDEpts~lD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~ 884 (1050)
||||++|||||+.+|++|||||||+|||+.+...+++.|+++. .|+|+|++||+++++.. ||||++|++|++++.|++
T Consensus 155 ~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~ 234 (254)
T d1g6ha_ 155 QMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 234 (254)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEES
T ss_pred HHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECH
T ss_conf 88899999999759272324397656999999999999999997899899994769999986999999969989999668
Q ss_pred HHHHHC
Q ss_conf 678513
Q 001580 885 EELLSN 890 (1050)
Q Consensus 885 ~el~~~ 890 (1050)
+|+.++
T Consensus 235 ~e~~~~ 240 (254)
T d1g6ha_ 235 EEEIKN 240 (254)
T ss_dssp HHHHHH
T ss_pred HHHHHC
T ss_conf 998654
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.4e-45 Score=352.97 Aligned_cols=219 Identities=25% Similarity=0.441 Sum_probs=189.7
Q ss_pred CCEEEEEEEEEECCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHE
Q ss_conf 56899989999489999810002389639969999979999988999998404668862899989606898958875212
Q 001580 664 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 743 (1050)
Q Consensus 664 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~~GaGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i 743 (1050)
|.|+++|++++|+.. ++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.+ .+...|+.+
T Consensus 1 gaI~v~nl~k~yg~~--~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~~i 77 (238)
T d1vpla_ 1 GAVVVKDLRKRIGKK--EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLI 77 (238)
T ss_dssp CCEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTE
T ss_pred CCEEEEEEEEEECCE--EEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC-CHHHHHHHE
T ss_conf 978999589999999--99806256884897999999999999999999966988788879998672446-839887218
Q ss_pred EEECCCCCCCCC-CHHHHCCCCC---CCCHHHHHHHHHHHCHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 787677655664-4777046699---999889999999930899998725994036302999999459999999999703
Q 001580 744 GIIPQSPVLFSG-TVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 819 (1050)
Q Consensus 744 ~~v~Q~~~lf~~-tv~~nl~~~~---~~~~~~~~~~~~~~~l~~~i~~~p~gl~t~v~e~~~~LSgGqkqrl~lArall~ 819 (1050)
+|+||++.+|.. |+.||+.++. .....++.+..+. .++. .++.........+||||||||++|||||+.
T Consensus 78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~-----~l~~--~~l~~~~~~~~~~lSgG~~qrv~iA~al~~ 150 (238)
T d1vpla_ 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVER-----ATEI--AGLGEKIKDRVSTYSKGMVRKLLIARALMV 150 (238)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHH-----HHHH--HCCGGGGGSBGGGCCHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH-----HHHH--CCCHHHHHHHHHHCCHHHHHHHHHHHHHHC
T ss_conf 675001546878667788898998617998999999999-----9986--797888850453379989899999999865
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHHCCC
Q ss_conf 998999846674889998999999999873-89489985058103653-19899995977998439367851389
Q 001580 820 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 892 (1050)
Q Consensus 820 ~p~illLDEpts~lD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~ 892 (1050)
+|++|+|||||+|||+.+.+.+++.++++. .|+|+|++||+++++.. ||||++|++|++++.|+++++..+..
T Consensus 151 ~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~~ 225 (238)
T d1vpla_ 151 NPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYK 225 (238)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHTT
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf 999887337988979899999999999999659989999598999999699999998999999928999986528
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.4e-45 Score=352.67 Aligned_cols=212 Identities=24% Similarity=0.332 Sum_probs=176.2
Q ss_pred EEEEEEEEEECCCCC--CCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH----
Q ss_conf 899989999489999--81000238963996999997999998899999840466886289998960689895887----
Q 001580 666 IKFEDVVLRYRPELP--PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL---- 739 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~--~~l~~isl~i~~Ge~~~ivG~~GaGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~---- 739 (1050)
|+++||+++|+.+.. .+|+|+||++++||++||+||||||||||+++|.|+++|++|+|.++|.++...+...+
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred HHHEEEECCCCCCCCC-CHHHHCCCC------CCCCHHHHHHHHHHHCHHHHHHHCCCCCCH-HHHCCCCCCCHHHHHHH
Q ss_conf 5212787677655664-477704669------999988999999993089999872599403-63029999994599999
Q 001580 740 RKILGIIPQSPVLFSG-TVRFNLDPF------SEHSDADLWEALERAHLKDAIRRNSLGLDA-QVSEAGENFSVGQRQLL 811 (1050)
Q Consensus 740 r~~i~~v~Q~~~lf~~-tv~~nl~~~------~~~~~~~~~~~~~~~~l~~~i~~~p~gl~t-~v~e~~~~LSgGqkqrl 811 (1050)
|++||||+|++.+|.. ||.+|+.+. ......+..+. +.+.++. .|+.. .......+||||||||+
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~-----~~~~l~~--~~L~~~~~~~~p~~LSGGqkQRv 154 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKR-----ALECLKM--AELEERFANHKPNQLSGGQQQRV 154 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHH-----HHHHHHH--TTCCGGGTTCCGGGSCHHHHHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHH-----HHHHHHH--HCHHHHHHCCCHHHCCHHHHHHH
T ss_conf 5557788041241768668887757888722478999999999-----9998876--24234553488023899999999
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCH
Q ss_conf 99999703998999846674889998999999999873--89489985058103653198999959779984393
Q 001580 812 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTP 884 (1050)
Q Consensus 812 ~lArall~~p~illLDEpts~lD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~ 884 (1050)
+|||||+.+|++|+|||||++||+.+...+++.|.++. .++|+|+|||+++++..||||++|++|+|+++|++
T Consensus 155 aIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 155 AIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf 987565227888994687654698999999999999998439999998788899986998999989999995257
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=7.7e-44 Score=339.97 Aligned_cols=213 Identities=27% Similarity=0.414 Sum_probs=180.3
Q ss_pred EEEEEEEEEECCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEEE
Q ss_conf 89998999948999981000238963996999997999998899999840466886289998960689895887521278
Q 001580 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 666 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~~GaGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~ 745 (1050)
+++ ++.++|+.- .+ |+||++. +|+++|+||||||||||+++|.|+++|++|+|.++|.++.+.++ .|+.|||
T Consensus 3 l~v-~~~k~~g~~---~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~--~~r~ig~ 74 (240)
T d2onka1 3 LKV-RAEKRLGNF---RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPP--ERRGIGF 74 (240)
T ss_dssp EEE-EEEEEETTE---EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCT--TTSCCBC
T ss_pred EEE-EEEEEECCE---EE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCH--HHCCCEE
T ss_conf 999-999998999---99-9999749-97999997999809999999973999896289999999886998--9928522
Q ss_pred ECCCCCCCCC-CHHHHCCCCCC-CCHHHHHHHHHHHCHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 7677655664-47770466999-998899999999308999987259940363029999994599999999997039989
Q 001580 746 IPQSPVLFSG-TVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 823 (1050)
Q Consensus 746 v~Q~~~lf~~-tv~~nl~~~~~-~~~~~~~~~~~~~~l~~~i~~~p~gl~t~v~e~~~~LSgGqkqrl~lArall~~p~i 823 (1050)
|||++.+|+. ||+||+.+... ....+..+ .+.+.++. .|+....+.....||||||||++||||++.+|++
T Consensus 75 v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~-----~v~~~l~~--~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~i 147 (240)
T d2onka1 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDR-----RVREMAEK--LGIAHLLDRKPARLSGGERQRVALARALVIQPRL 147 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHH-----HHHHHHHT--TTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSS
T ss_pred ECCCHHHCCCCHHHHHHHHHHCCCCHHHHHH-----HHHHHHHH--CCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCC
T ss_conf 5231443522015576665323367788999-----99999986--3837566579444899998999998777516770
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHHCCCC
Q ss_conf 998466748899989999999998738--9489985058103653-198999959779984393678513898
Q 001580 824 LVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 893 (1050)
Q Consensus 824 llLDEpts~lD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~ 893 (1050)
|+|||||++||+.+...+++.|+++.+ +.|+|++||+++++.. ||||++|++|++++.|+++|+.+.+..
T Consensus 148 lllDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~ 220 (240)
T d2onka1 148 LLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNG 220 (240)
T ss_dssp BEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCS
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCCCH
T ss_conf 6752865558879999999999999874397699981899999996999999989999999069998329988
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=3.3e-42 Score=327.76 Aligned_cols=204 Identities=23% Similarity=0.317 Sum_probs=169.5
Q ss_pred CCCEEEEEEEEEECCCCCCCCEEECEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEE----------EECCE
Q ss_conf 99189994899828999998311000886099799999599982899999997398999887067----------70928
Q 001580 39 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTV 108 (1050)
Q Consensus 39 ~~~i~~~~~~f~~~~~~~~~~L~~isL~i~~Ge~valvG~nGSGKSTLl~~L~G~~~~~~G~~~~----------~~~~I 108 (1050)
+..|+++|++++|+ +..+|++|||++++|++++|+|+||||||||+++|+|.++|++|.+.+ .+..|
T Consensus 4 M~~I~v~nlsk~yg---~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~i 80 (239)
T d1v43a3 4 MVEVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNI 80 (239)
T ss_dssp CCCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTE
T ss_pred CCEEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCCEE
T ss_conf 07499987999999---999981306788799899999999982999999997589998787999164135477000158
Q ss_pred EEEECCCCCC-CCCHHHHHCCCCCC---CHHHH----HHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 9992478787-63489986149999---98899----9999980937898409999963125799877978999999999
Q 001580 109 AYVPQVSWIF-NATVRDNILFGSAF---EPARY----EKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 180 (1050)
Q Consensus 109 g~v~Q~~~L~-~~TV~enI~~g~~~---~~~~~----~~~~~~~~L~~~i~~l~~g~~t~ig~~g~~LSGGQKqRiaLAR 180 (1050)
|||||++-+| +.||+||+.|+... +.... ...++...+.+ ..+.....||||||||++|||
T Consensus 81 g~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSGGq~QRvaiAr 149 (239)
T d1v43a3 81 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEE-----------LLNRYPAQLSGGQRQRVAVAR 149 (239)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGG-----------GTTSCTTTCCSSCHHHHHHHH
T ss_pred EEEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHH-----------HHCCCHHHCCHHHHHHHHHHH
T ss_conf 998003353422209999999998739999999999999998759855-----------660995469999988999976
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCC-CCCEEEEECCCCCHHHH-CCEEEEECCCEEEECCCHHHHHCC
Q ss_conf 87029989999397888598999999999970015-99489995159121421-297899759848440572433028
Q 001580 181 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 256 (1050)
Q Consensus 181 AL~~~~~IllLDEpts~LD~~s~~~i~~~ll~~~~-~~~T~IlvTH~l~~l~~-aD~I~vL~~G~i~~~g~~~eL~~~ 256 (1050)
||+.+|+|++|||||++|||.+++.+++.+.+... .|.|+|+|||++.+... ||||++|++|+++++|+++++..+
T Consensus 150 aL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~ 227 (239)
T d1v43a3 150 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 227 (239)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred HHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 640499824306886668989998999999999873198079994899999986999999989999998599999868
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.8e-42 Score=329.71 Aligned_cols=201 Identities=29% Similarity=0.420 Sum_probs=167.6
Q ss_pred EEEEEEEEEECCCCCCCCEEECEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEE----------EECCEEEE
Q ss_conf 89994899828999998311000886099799999599982899999997398999887067----------70928999
Q 001580 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 111 (1050)
Q Consensus 42 i~~~~~~f~~~~~~~~~~L~~isL~i~~Ge~valvG~nGSGKSTLl~~L~G~~~~~~G~~~~----------~~~~Ig~v 111 (1050)
|+++|++++|. +..+|+||||++++|++++|+|+||||||||+++|+|.++|++|.+.+ .+..||||
T Consensus 1 Iev~nv~k~yg---~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v 77 (232)
T d2awna2 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMV 77 (232)
T ss_dssp EEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEE
T ss_pred CEEEEEEEEEC---CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHCEEEEE
T ss_conf 99999999989---999981117788699899999899982999999996587888888999999778886444322234
Q ss_pred ECCCCCC-CCCHHHHHCCCCCCC---H----HHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 2478787-634899861499999---8----8999999980937898409999963125799877978999999999870
Q 001580 112 PQVSWIF-NATVRDNILFGSAFE---P----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 183 (1050)
Q Consensus 112 ~Q~~~L~-~~TV~enI~~g~~~~---~----~~~~~~~~~~~L~~~i~~l~~g~~t~ig~~g~~LSGGQKqRiaLARAL~ 183 (1050)
||++.++ ..||+||+.|+.... . ++..+.++...+.+. ......+||||||||++|||||+
T Consensus 78 ~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~-----------~~~~~~~LSGGqkQRvaiAraL~ 146 (232)
T d2awna2 78 FQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHL-----------LDRKPKALSGGQRQRVAIGRTLV 146 (232)
T ss_dssp CSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH-----------HHCCHHHCCHHHHHHHHHHHHHH
T ss_conf 3342026433378897899987599889999999999975788656-----------64896569999999999999970
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHCCC-CCCCEEEEECCCCCHHHH-CCEEEEECCCEEEECCCHHHHHCC
Q ss_conf 2998999939788859899999999997001-599489995159121421-297899759848440572433028
Q 001580 184 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 256 (1050)
Q Consensus 184 ~~~~IllLDEpts~LD~~s~~~i~~~ll~~~-~~~~T~IlvTH~l~~l~~-aD~I~vL~~G~i~~~g~~~eL~~~ 256 (1050)
.+|++++|||||++|||.+++.+++.+.+.. ..|+|+|++||++.++.. ||||++|++|++++.|+++++.++
T Consensus 147 ~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~ 221 (232)
T d2awna2 147 AEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221 (232)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHC
T ss_conf 399889975888788988998999999999874298799994899999996999999979999998089999738
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=3.5e-42 Score=327.63 Aligned_cols=205 Identities=25% Similarity=0.337 Sum_probs=169.3
Q ss_pred CCEEEEEEEEEECCCCCCCCEEECEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEE---------------E
Q ss_conf 9189994899828999998311000886099799999599982899999997398999887067---------------7
Q 001580 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------I 104 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~~~~~L~~isL~i~~Ge~valvG~nGSGKSTLl~~L~G~~~~~~G~~~~---------------~ 104 (1050)
..|+++|++++|+. ++..+|+||||++++||+++|+|+||||||||+++|+|..+|++|.+.+ .
T Consensus 2 ~~i~v~nlsk~y~~-g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (242)
T d1oxxk2 2 VRIIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80 (242)
T ss_dssp CCEEEEEEEEEEGG-GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred CEEEEEEEEEEECC-CCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHH
T ss_conf 88999757999889-99899804078987998999998999809999999975868887459999999513731115312
Q ss_pred ECCEEEEECCCCCC-CCCHHHHHCCCCCC---CHH----HHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 09289992478787-63489986149999---988----99999998093789840999996312579987797899999
Q 001580 105 RGTVAYVPQVSWIF-NATVRDNILFGSAF---EPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 176 (1050)
Q Consensus 105 ~~~Ig~v~Q~~~L~-~~TV~enI~~g~~~---~~~----~~~~~~~~~~L~~~i~~l~~g~~t~ig~~g~~LSGGQKqRi 176 (1050)
+..||||+|++.++ ..||+|||.|+... +.. +..+.++.+.+.+. .+.....||||||||+
T Consensus 81 rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~-----------~~~~p~~LSGGqkQRv 149 (242)
T d1oxxk2 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHV-----------LNHFPRELSGAQQQRV 149 (242)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGG-----------TTSCGGGSCHHHHHHH
T ss_pred HCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHH-----------HHCCHHHCCHHHHHHH
T ss_conf 04514773043346666577776655676137999999999999866591766-----------6489545999998589
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCC-CCCEEEEECCCCCHHH-HCCEEEEECCCEEEECCCHHHHH
Q ss_conf 999987029989999397888598999999999970015-9948999515912142-12978997598484405724330
Q 001580 177 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLS 254 (1050)
Q Consensus 177 aLARAL~~~~~IllLDEpts~LD~~s~~~i~~~ll~~~~-~~~T~IlvTH~l~~l~-~aD~I~vL~~G~i~~~g~~~eL~ 254 (1050)
+|||||..+|+++++||||++|||.++..+++.+..... .|.|+|+|||+++++. .||||++|++|++++.|+++++.
T Consensus 150 aiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~ 229 (242)
T d1oxxk2 150 ALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (242)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 98757760466145447866799899889989999998635987999979999999969999999899999986999998
Q ss_pred CC
Q ss_conf 28
Q 001580 255 NN 256 (1050)
Q Consensus 255 ~~ 256 (1050)
++
T Consensus 230 ~~ 231 (242)
T d1oxxk2 230 DN 231 (242)
T ss_dssp HS
T ss_pred HC
T ss_conf 68
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=4.3e-42 Score=326.97 Aligned_cols=203 Identities=23% Similarity=0.382 Sum_probs=167.9
Q ss_pred CCEEEEEEEEEECCCCCCCCEEECEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEE----------------
Q ss_conf 9189994899828999998311000886099799999599982899999997398999887067----------------
Q 001580 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------- 103 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~~~~~L~~isL~i~~Ge~valvG~nGSGKSTLl~~L~G~~~~~~G~~~~---------------- 103 (1050)
..|+++|++++|. +..+|+||||++++||+++|+|+||||||||+++|+|.++|++|.+.+
T Consensus 2 ~~i~v~nl~k~yg---~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 78 (240)
T d1g2912 2 AGVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78 (240)
T ss_dssp EEEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG
T ss_pred CCEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCC
T ss_conf 8189986999989---9999856066886998999999999809999999964878898989999998035664442453
Q ss_pred EECCEEEEECCCCCC-CCCHHHHHCCCC---CCCHHH----HHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 709289992478787-634899861499---999889----999999809378984099999631257998779789999
Q 001580 104 IRGTVAYVPQVSWIF-NATVRDNILFGS---AFEPAR----YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 175 (1050)
Q Consensus 104 ~~~~Ig~v~Q~~~L~-~~TV~enI~~g~---~~~~~~----~~~~~~~~~L~~~i~~l~~g~~t~ig~~g~~LSGGQKqR 175 (1050)
.+..||||+|+|-++ ..||+||+.++. ..+... ..+.++...+.+ ..+....+||||||||
T Consensus 79 ~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~-----------~~~~~p~~LSGGqkQR 147 (240)
T d1g2912 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTE-----------LLNRKPRELSGGQRQR 147 (240)
T ss_dssp GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGG-----------GTTCCGGGSCHHHHHH
T ss_pred CCCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHH-----------HHCCCHHHCCHHHHHH
T ss_conf 22551200221222310116676330687729998999999999998759966-----------7629933499999999
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCC-CCCEEEEECCCCCHHHH-CCEEEEECCCEEEECCCHHHH
Q ss_conf 9999987029989999397888598999999999970015-99489995159121421-297899759848440572433
Q 001580 176 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 253 (1050)
Q Consensus 176 iaLARAL~~~~~IllLDEpts~LD~~s~~~i~~~ll~~~~-~~~T~IlvTH~l~~l~~-aD~I~vL~~G~i~~~g~~~eL 253 (1050)
++|||||..+|+|++|||||++|||.++..+++.+.+... .|.|+|++||++.++.. ||||++|++|++++.|+++++
T Consensus 148 v~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el 227 (240)
T d1g2912 148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227 (240)
T ss_dssp HHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHH
T ss_conf 99999982699889825887656989998999999999863698899995999999996999999989999998599999
Q ss_pred HCC
Q ss_conf 028
Q 001580 254 SNN 256 (1050)
Q Consensus 254 ~~~ 256 (1050)
..+
T Consensus 228 ~~~ 230 (240)
T d1g2912 228 YDK 230 (240)
T ss_dssp HHS
T ss_pred HHC
T ss_conf 828
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=7e-42 Score=325.35 Aligned_cols=201 Identities=27% Similarity=0.398 Sum_probs=168.2
Q ss_pred CEEEEEEEEEECCCCCCCCEEECEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEE----------EECCEEE
Q ss_conf 189994899828999998311000886099799999599982899999997398999887067----------7092899
Q 001580 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 110 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~~~L~~isL~i~~Ge~valvG~nGSGKSTLl~~L~G~~~~~~G~~~~----------~~~~Ig~ 110 (1050)
+|+++|++++|.. .+|+||||++++||+++|+|+||||||||+++|+|.++|++|.+.+ .+..|||
T Consensus 1 mi~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~ 76 (229)
T d3d31a2 1 MIEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAF 76 (229)
T ss_dssp CEEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEE
T ss_pred CEEEEEEEEEECC----EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHCCEE
T ss_conf 9899989999499----788433789879989999989998299999999647688878899956734652165740561
Q ss_pred EECCCCCC-CCCHHHHHCCCCC----CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 92478787-6348998614999----998899999998093789840999996312579987797899999999987029
Q 001580 111 VPQVSWIF-NATVRDNILFGSA----FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 185 (1050)
Q Consensus 111 v~Q~~~L~-~~TV~enI~~g~~----~~~~~~~~~~~~~~L~~~i~~l~~g~~t~ig~~g~~LSGGQKqRiaLARAL~~~ 185 (1050)
|+|++-+| ..||+||+.|+.. .+.++..++.+...+.+ .......+|||||||||+|||||+.+
T Consensus 77 v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSGG~~QRvaiAraL~~~ 145 (229)
T d3d31a2 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEH-----------LLDRNPLTLSGGEQQRVALARALVTN 145 (229)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTT-----------TTTSCGGGSCHHHHHHHHHHHHTTSC
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHH-----------HHHCCHHHCCHHHHCCHHHHHHHHCC
T ss_conf 5121111746657788888776405538999999999825655-----------57589554799984014030434436
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHCCC-CCCCEEEEECCCCCHHHH-CCEEEEECCCEEEECCCHHHHHCC
Q ss_conf 98999939788859899999999997001-599489995159121421-297899759848440572433028
Q 001580 186 SDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 256 (1050)
Q Consensus 186 ~~IllLDEpts~LD~~s~~~i~~~ll~~~-~~~~T~IlvTH~l~~l~~-aD~I~vL~~G~i~~~g~~~eL~~~ 256 (1050)
|+++||||||++|||.++..+++.+.... ..|.|+|++||++..+.. ||||++|++|+++++|+++++.++
T Consensus 146 P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~ 218 (229)
T d3d31a2 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218 (229)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 7714434787679989999999999999864796899974999999996999999979999998699999868
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.8e-42 Score=325.03 Aligned_cols=208 Identities=25% Similarity=0.344 Sum_probs=167.5
Q ss_pred CEEEEEEEEEECCCCCC-CCEEECEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEE---------------E
Q ss_conf 18999489982899999-8311000886099799999599982899999997398999887067---------------7
Q 001580 41 AISIRNGYFSWDSKAER-PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------I 104 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~-~~L~~isL~i~~Ge~valvG~nGSGKSTLl~~L~G~~~~~~G~~~~---------------~ 104 (1050)
+|+++|++++|+.+... .+|+||||++++|++++|+|+||||||||+++|+|..+|++|.+.+ .
T Consensus 1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHH
T ss_pred CEEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHH
T ss_conf 97998279996999814898615057886997999989998988899998758863667732886768520875551155
Q ss_pred ECCEEEEECCCCCC-CCCHHHHHCCCCC---CCH-HHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 09289992478787-6348998614999---998-899999998093789840999996312579987797899999999
Q 001580 105 RGTVAYVPQVSWIF-NATVRDNILFGSA---FEP-ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 179 (1050)
Q Consensus 105 ~~~Ig~v~Q~~~L~-~~TV~enI~~g~~---~~~-~~~~~~~~~~~L~~~i~~l~~g~~t~ig~~g~~LSGGQKqRiaLA 179 (1050)
|..||||||++-++ ..||+|||.++.. ... +...++ ..+.+.+.+.+. .+.....|||||||||+||
T Consensus 81 rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v---~~~L~~vgL~~~-----~~~~~~~LSGG~~QRvaiA 152 (240)
T d3dhwc1 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV---TELLSLVGLGDK-----HDSYPSNLSGGQKQRVAIA 152 (240)
T ss_dssp HHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHH---HHHHHHHSTTTT-----TSSCBSCCCHHHHHHHHHH
T ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHH---HHHHHHCCCCHH-----HHCCHHHCCHHHHHHHHHH
T ss_conf 41664302252227996499999999998499989999999---999997699035-----5489434999999899986
Q ss_pred HHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCC-CCCEEEEECCCCCHHHH-CCEEEEECCCEEEECCCHHHHHCC
Q ss_conf 987029989999397888598999999999970015-99489995159121421-297899759848440572433028
Q 001580 180 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 256 (1050)
Q Consensus 180 RAL~~~~~IllLDEpts~LD~~s~~~i~~~ll~~~~-~~~T~IlvTH~l~~l~~-aD~I~vL~~G~i~~~g~~~eL~~~ 256 (1050)
|||..+|+++|+||||++|||.+++.+++.+..... .|.|+|++||++.++.. ||||++|++|++++.|+++++..+
T Consensus 153 raL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~~ 231 (240)
T d3dhwc1 153 RALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 231 (240)
T ss_dssp HHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTCS
T ss_pred HHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 4010589868744655658988856799999999864697899983899999986999999979999998799999728
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4.7e-42 Score=326.66 Aligned_cols=203 Identities=26% Similarity=0.379 Sum_probs=161.0
Q ss_pred CEEEEEEEEEECCCCC-CCCEEECEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEE---------------
Q ss_conf 1899948998289999-983110008860997999995999828999999973989998870677---------------
Q 001580 41 AISIRNGYFSWDSKAE-RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI--------------- 104 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~-~~~L~~isL~i~~Ge~valvG~nGSGKSTLl~~L~G~~~~~~G~~~~~--------------- 104 (1050)
+|+++|++++|+.... ..+|+|+||++++|++++|+|+||||||||+++|+|..+|++|.+.+-
T Consensus 1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHH
T ss_conf 98999079994899820898713377884997999988999982165575068877776626999998576885551231
Q ss_pred -ECCEEEEECCCCCC-CCCHHHHHCCCCC------CCH-HHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf -09289992478787-6348998614999------998-89999999809378984099999631257998779789999
Q 001580 105 -RGTVAYVPQVSWIF-NATVRDNILFGSA------FEP-ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 175 (1050)
Q Consensus 105 -~~~Ig~v~Q~~~L~-~~TV~enI~~g~~------~~~-~~~~~~~~~~~L~~~i~~l~~g~~t~ig~~g~~LSGGQKqR 175 (1050)
+..||||+|++-++ ..||+||+.++.. .+. ++.+++.+ +.+.+.+.. ........+||||||||
T Consensus 81 r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~L~~----~~~~~~p~~LSGGqkQR 153 (230)
T d1l2ta_ 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALE---CLKMAELEE----RFANHKPNQLSGGQQQR 153 (230)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHH---HHHHTTCCG----GGTTCCGGGSCHHHHHH
T ss_pred HCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHHHHCHHH----HHHCCCHHHCCHHHHHH
T ss_conf 25557788041241768668887757888722478999999999999---887624234----55348802389999999
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCC-CCCCEEEEECCCCCHHHHCCEEEEECCCEEEECCCH
Q ss_conf 999998702998999939788859899999999997001-599489995159121421297899759848440572
Q 001580 176 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTF 250 (1050)
Q Consensus 176 iaLARAL~~~~~IllLDEpts~LD~~s~~~i~~~ll~~~-~~~~T~IlvTH~l~~l~~aD~I~vL~~G~i~~~g~~ 250 (1050)
|+|||||+.+|++++|||||++|||.++..+++.+.+.. ..|.|+|+|||+++.+..||||++|++|+++++|..
T Consensus 154 vaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 154 VAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf 9987565227888994687654698999999999999998439999998788899986998999989999995257
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=7.8e-41 Score=317.54 Aligned_cols=209 Identities=23% Similarity=0.345 Sum_probs=168.7
Q ss_pred CCCEEEEEEEEEECCCCCCCCEEECEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEE-------------EE
Q ss_conf 99189994899828999998311000886099799999599982899999997398999887067-------------70
Q 001580 39 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IR 105 (1050)
Q Consensus 39 ~~~i~~~~~~f~~~~~~~~~~L~~isL~i~~Ge~valvG~nGSGKSTLl~~L~G~~~~~~G~~~~-------------~~ 105 (1050)
..+|+++|++++|. +..+|+||||++++||+++|+|+||||||||+++|+|.++|++|.+.+ .+
T Consensus 4 d~~Lev~~l~k~yg---~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r 80 (240)
T d1ji0a_ 4 DIVLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR 80 (240)
T ss_dssp SEEEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred CEEEEEEEEEEEEC---CEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHH
T ss_conf 60799961899989---988883025788899799999999985999999996788888038984244344660888887
Q ss_pred CCEEEEECCCCCC-CCCHHHHHCCCCCC--CHHHHHHHH-HHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9289992478787-63489986149999--988999999-9809378984099999631257998779789999999998
Q 001580 106 GTVAYVPQVSWIF-NATVRDNILFGSAF--EPARYEKAI-DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 181 (1050)
Q Consensus 106 ~~Ig~v~Q~~~L~-~~TV~enI~~g~~~--~~~~~~~~~-~~~~L~~~i~~l~~g~~t~ig~~g~~LSGGQKqRiaLARA 181 (1050)
..|+|+||++.+| ..||+||+.++... +.....+.+ +...+...+.. ..+....+|||||||||+||||
T Consensus 81 ~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~LSGG~~Qrv~iAra 153 (240)
T d1ji0a_ 81 MGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKE-------RLKQLGGTLSGGEQQMLAIGRA 153 (240)
T ss_dssp TTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHT-------TTTSBSSSSCHHHHHHHHHHHH
T ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHH-------HHHCCHHHCCHHHHHHHHHHHH
T ss_conf 423556765545776369999998887327888999999999987417688-------8758543389999999999999
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHH-HCCEEEEECCCEEEECCCHHHHHCCH
Q ss_conf 70299899993978885989999999999700159948999515912142-12978997598484405724330282
Q 001580 182 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNG 257 (1050)
Q Consensus 182 L~~~~~IllLDEpts~LD~~s~~~i~~~ll~~~~~~~T~IlvTH~l~~l~-~aD~I~vL~~G~i~~~g~~~eL~~~~ 257 (1050)
|..+|++++|||||++|||.+++.+++.+.+...+|+|+|++||+++++. .||||++|++|+++++|+++++.++.
T Consensus 154 L~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~ 230 (240)
T d1ji0a_ 154 LMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNE 230 (240)
T ss_dssp HTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTCH
T ss_pred HHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCCH
T ss_conf 98299874003988679999999999999999968998999958899999969999999899999984899984298
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.7e-40 Score=312.54 Aligned_cols=203 Identities=28% Similarity=0.435 Sum_probs=167.3
Q ss_pred CEEEEEEEEEECCCCCCCCEEECEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEE-----------------
Q ss_conf 189994899828999998311000886099799999599982899999997398999887067-----------------
Q 001580 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------- 103 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~~~L~~isL~i~~Ge~valvG~nGSGKSTLl~~L~G~~~~~~G~~~~----------------- 103 (1050)
.|+++|++++|. +..+|+||||++++||+++|+|+||||||||+++|+|.++|++|.+..
T Consensus 2 ~Lev~nl~k~yg---~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred EEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCC
T ss_conf 699997899989---99988150668869979999989998299999999747667899779999993367752000023
Q ss_pred --------EECCEEEEECCCCCC-CCCHHHHHCCCC----CCCHH----HHHHHHHHHCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf --------709289992478787-634899861499----99988----9999999809378984099999631257998
Q 001580 104 --------IRGTVAYVPQVSWIF-NATVRDNILFGS----AFEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGV 166 (1050)
Q Consensus 104 --------~~~~Ig~v~Q~~~L~-~~TV~enI~~g~----~~~~~----~~~~~~~~~~L~~~i~~l~~g~~t~ig~~g~ 166 (1050)
.+..||||+|+|-++ ..||.||+.++. ..... +..+.++...+.+... .....
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~p~ 148 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQ----------GKYPV 148 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHH----------TSCGG
T ss_pred CCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHH----------CCCCC
T ss_conf 51767999745448998332314110102136565787629998999999999999829952443----------06822
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHH-CCEEEEECCCEEE
Q ss_conf 779789999999998702998999939788859899999999997001599489995159121421-2978997598484
Q 001580 167 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVK 245 (1050)
Q Consensus 167 ~LSGGQKqRiaLARAL~~~~~IllLDEpts~LD~~s~~~i~~~ll~~~~~~~T~IlvTH~l~~l~~-aD~I~vL~~G~i~ 245 (1050)
.|||||||||+|||||..+|+++++||||++|||.+.+.|++.+.....+|+|+|+|||++..+.. ||||++|++|+++
T Consensus 149 ~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv 228 (258)
T d1b0ua_ 149 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 228 (258)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEEE
T ss_conf 05677888989999984399878852455568878888998765541036883389948999999869999999799999
Q ss_pred ECCCHHHHHCC
Q ss_conf 40572433028
Q 001580 246 EEGTFEDLSNN 256 (1050)
Q Consensus 246 ~~g~~~eL~~~ 256 (1050)
+.|+++++..+
T Consensus 229 ~~g~~~ev~~~ 239 (258)
T d1b0ua_ 229 EEGDPEQVFGN 239 (258)
T ss_dssp EEECHHHHHHS
T ss_pred EECCHHHHHHC
T ss_conf 98499999838
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.4e-40 Score=313.97 Aligned_cols=205 Identities=21% Similarity=0.345 Sum_probs=165.6
Q ss_pred CCEEEEEEEEEECCCCCCCCEEECEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEE-------------EC
Q ss_conf 91899948998289999983110008860997999995999828999999973989998870677-------------09
Q 001580 40 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------------RG 106 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~~~~~~~L~~isL~i~~Ge~valvG~nGSGKSTLl~~L~G~~~~~~G~~~~~-------------~~ 106 (1050)
.+|+++|++++|. +..+|+||||++++||+++|+|+||||||||+++|+|.++|++|.+.+- +.
T Consensus 3 ~iL~v~nlsk~yg---~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 79 (254)
T d1g6ha_ 3 EILRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 79 (254)
T ss_dssp EEEEEEEEEEEET---TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHH
T ss_conf 6699977899979---9688712179988997999999999849999999977976887379999996640569999983
Q ss_pred CEEEEECCCCCC-CCCHHHHHCCCCCC-----------------CHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 289992478787-63489986149999-----------------988999999980937898409999963125799877
Q 001580 107 TVAYVPQVSWIF-NATVRDNILFGSAF-----------------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI 168 (1050)
Q Consensus 107 ~Ig~v~Q~~~L~-~~TV~enI~~g~~~-----------------~~~~~~~~~~~~~L~~~i~~l~~g~~t~ig~~g~~L 168 (1050)
.|+|+||++.++ +.||.||+.++... +....+++.+ +.+.+... ...+....+|
T Consensus 80 gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~l~-----~~~~~~~~~L 151 (254)
T d1g6ha_ 80 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFK---ILEFLKLS-----HLYDRKAGEL 151 (254)
T ss_dssp TEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHH---HHHHTTCG-----GGTTSBGGGS
T ss_pred CCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHH---HHHHCCCC-----HHCCCCHHHC
T ss_conf 387257764247887423214301333034504566542135328999999999---98761963-----0205953569
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHH-HCCEEEEECCCEEEEC
Q ss_conf 978999999999870299899993978885989999999999700159948999515912142-1297899759848440
Q 001580 169 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEE 247 (1050)
Q Consensus 169 SGGQKqRiaLARAL~~~~~IllLDEpts~LD~~s~~~i~~~ll~~~~~~~T~IlvTH~l~~l~-~aD~I~vL~~G~i~~~ 247 (1050)
||||||||+|||||..+|++++|||||++|||.+++.+++.+.....+|.|+|++||+++++. .||||++|++|+++++
T Consensus 152 SgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~ 231 (254)
T d1g6ha_ 152 SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE 231 (254)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEE
T ss_conf 91888899999999759272324397656999999999999999997899899994769999986999999969989999
Q ss_pred CCHHHHHC
Q ss_conf 57243302
Q 001580 248 GTFEDLSN 255 (1050)
Q Consensus 248 g~~~eL~~ 255 (1050)
|+++|+..
T Consensus 232 g~~~e~~~ 239 (254)
T d1g6ha_ 232 GRGEEEIK 239 (254)
T ss_dssp EESHHHHH
T ss_pred ECHHHHHH
T ss_conf 66899865
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=5.2e-40 Score=311.42 Aligned_cols=205 Identities=24% Similarity=0.377 Sum_probs=167.2
Q ss_pred CEEEEEEEEEECCCCCCCCEEECEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEE-----------EECCEE
Q ss_conf 189994899828999998311000886099799999599982899999997398999887067-----------709289
Q 001580 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVA 109 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~~~L~~isL~i~~Ge~valvG~nGSGKSTLl~~L~G~~~~~~G~~~~-----------~~~~Ig 109 (1050)
+|+++|++++|. ++.+|+|+||++++|++++|+|+||||||||+++|+|.++|++|.+.+ .+..+|
T Consensus 2 aI~v~nl~k~yg---~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~ 78 (238)
T d1vpla_ 2 AVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLIS 78 (238)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEE
T ss_pred CEEEEEEEEEEC---CEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHHEE
T ss_conf 789995899999---99998062568848979999999999999999999669887888799986724468398872186
Q ss_pred EEECCCCCC-CCCHHHHHCCCCC---CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 992478787-6348998614999---998899999998093789840999996312579987797899999999987029
Q 001580 110 YVPQVSWIF-NATVRDNILFGSA---FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 185 (1050)
Q Consensus 110 ~v~Q~~~L~-~~TV~enI~~g~~---~~~~~~~~~~~~~~L~~~i~~l~~g~~t~ig~~g~~LSGGQKqRiaLARAL~~~ 185 (1050)
||||.+.++ +.|+.||+.+... ....+..+.++ .+.+.+.+. ........+||||||||++|||||+.+
T Consensus 79 ~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~--~~l~~~~l~-----~~~~~~~~~lSgG~~qrv~iA~al~~~ 151 (238)
T d1vpla_ 79 YLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVE--RATEIAGLG-----EKIKDRVSTYSKGMVRKLLIARALMVN 151 (238)
T ss_dssp EECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHH--HHHHHHCCG-----GGGGSBGGGCCHHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH--HHHHHCCCH-----HHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf 7500154687866778889899861799899999999--999867978-----888504533799898999999998659
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHH-CCEEEEECCCEEEECCCHHHHHC
Q ss_conf 98999939788859899999999997001599489995159121421-29789975984844057243302
Q 001580 186 SDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 255 (1050)
Q Consensus 186 ~~IllLDEpts~LD~~s~~~i~~~ll~~~~~~~T~IlvTH~l~~l~~-aD~I~vL~~G~i~~~g~~~eL~~ 255 (1050)
|++++|||||++|||.+++.+++.+......|+|+|++||+++++.. ||||++|++|+++..|+++++..
T Consensus 152 p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~ 222 (238)
T d1vpla_ 152 PRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 222 (238)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 99887337988979899999999999999659989999598999999699999998999999928999986
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.1e-40 Score=310.41 Aligned_cols=208 Identities=23% Similarity=0.345 Sum_probs=177.4
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEE
Q ss_conf 68999899994899998100023896399699999799999889999984046688628999896068989588752127
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 744 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~~GaGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~ 744 (1050)
.++++||+++| +|++|||+|++||++||+||||||||||+++|.|+. |++|+|.++|.++...+...++...+
T Consensus 3 il~~~dv~~~~------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 3 VMQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEEECCTT------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred EEEEECCCCCC------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHCE
T ss_conf 99998741571------555888899489899999899980999999994887-99559999999998699899986402
Q ss_pred EECCCCC-CCCCCHHHHCCCCCC--CCHHHHHHHHHHHCHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCC--
Q ss_conf 8767765-566447770466999--99889999999930899998725994036302999999459999999999703--
Q 001580 745 IIPQSPV-LFSGTVRFNLDPFSE--HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR-- 819 (1050)
Q Consensus 745 ~v~Q~~~-lf~~tv~~nl~~~~~--~~~~~~~~~~~~~~l~~~i~~~p~gl~t~v~e~~~~LSgGqkqrl~lArall~-- 819 (1050)
|++|+.. .|..++.+++..+.. ...+.+.+.++.. +++...+....+||||||||++||||+++
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----------~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~ 144 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL-----------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQIT 144 (231)
T ss_dssp EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHT-----------TCTTTTTSBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred EEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHC-----------CCHHHHCCCHHHCCHHHHHHHHHHHHHHHHC
T ss_conf 45121357744209887641001466899999999865-----------9876767684456998899999999998517
Q ss_pred -----CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf -----998999846674889998999999999873-89489985058103653-198999959779984393678513
Q 001580 820 -----RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890 (1050)
Q Consensus 820 -----~p~illLDEpts~lD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 890 (1050)
+|+||+|||||++||+.+...+++.++++. .++|+|++||+++++.. |||+++|++|++++.|+++|++.+
T Consensus 145 p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp TTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred CCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 133899889997187777898999999999999986799999996779999997999999979989998899998188
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=7e-38 Score=295.50 Aligned_cols=201 Identities=22% Similarity=0.380 Sum_probs=157.2
Q ss_pred EEEEEEEEEECCCCCCCCEEECEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEE----------EECCEEEE
Q ss_conf 89994899828999998311000886099799999599982899999997398999887067----------70928999
Q 001580 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 111 (1050)
Q Consensus 42 i~~~~~~f~~~~~~~~~~L~~isL~i~~Ge~valvG~nGSGKSTLl~~L~G~~~~~~G~~~~----------~~~~Ig~v 111 (1050)
+++ ++...+.. ..+ |+||+++ +++++|+||||||||||+++|+|.++|++|.+.+ .+..||||
T Consensus 3 l~v-~~~k~~g~----~~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v 75 (240)
T d2onka1 3 LKV-RAEKRLGN----FRL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75 (240)
T ss_dssp EEE-EEEEEETT----EEE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCC
T ss_pred EEE-EEEEEECC----EEE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCCEEE
T ss_conf 999-99999899----999-9999749-9799999799980999999997399989628999999988699899285225
Q ss_pred ECCCCCC-CCCHHHHHCCCCCC-CHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEE
Q ss_conf 2478787-63489986149999-988999999980937898409999963125799877978999999999870299899
Q 001580 112 PQVSWIF-NATVRDNILFGSAF-EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 189 (1050)
Q Consensus 112 ~Q~~~L~-~~TV~enI~~g~~~-~~~~~~~~~~~~~L~~~i~~l~~g~~t~ig~~g~~LSGGQKqRiaLARAL~~~~~Il 189 (1050)
||++-++ +.||+|||.|+... +....++ ++.++.+.+.+.. ..+.....|||||||||+|||||+.+|+++
T Consensus 76 ~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~--~v~~~l~~~gl~~-----~~~~~~~~LSGG~kQRvaiAral~~~P~il 148 (240)
T d2onka1 76 PQDYALFPHLSVYRNIAYGLRNVERVERDR--RVREMAEKLGIAH-----LLDRKPARLSGGERQRVALARALVIQPRLL 148 (240)
T ss_dssp CSSCCCCTTSCHHHHHHTTCTTSCHHHHHH--HHHHHHHTTTCTT-----TTTCCGGGSCHHHHHHHHHHHHHTTCCSSB
T ss_pred CCCHHHCCCCHHHHHHHHHHCCCCHHHHHH--HHHHHHHHCCCHH-----HHHCCHHHCCHHHHHHHHHHHHHHCCCCCE
T ss_conf 231443522015576665323367788999--9999998638375-----665794448999989999987775167706
Q ss_pred EEECCCCCCCHHHHHHHHHHHHCCCC-CCCEEEEECCCCCHHHH-CCEEEEECCCEEEECCCHHHHHCC
Q ss_conf 99397888598999999999970015-99489995159121421-297899759848440572433028
Q 001580 190 IFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 256 (1050)
Q Consensus 190 lLDEpts~LD~~s~~~i~~~ll~~~~-~~~T~IlvTH~l~~l~~-aD~I~vL~~G~i~~~g~~~eL~~~ 256 (1050)
+|||||++|||.++..+++.+....+ .|.|+|++||++..+.. ||||++|++|++++.|+++++.+.
T Consensus 149 llDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~ 217 (240)
T d2onka1 149 LLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp EEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCC
T ss_conf 752865558879999999999999874397699981899999996999999989999999069998329
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=6.8e-37 Score=288.16 Aligned_cols=189 Identities=24% Similarity=0.399 Sum_probs=152.7
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEE
Q ss_conf 68999899994899998100023896399699999799999889999984046688628999896068989588752127
Q 001580 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 744 (1050)
Q Consensus 665 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~~GaGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~ 744 (1050)
.|+++|++++|+. ++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.+ .+.+++
T Consensus 2 ~lev~~ls~~y~~---~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i~ 73 (200)
T d1sgwa_ 2 KLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKIF 73 (200)
T ss_dssp EEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGEE
T ss_pred EEEEEEEEEEECC---EEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHH-----HCCCEE
T ss_conf 5999989999399---28842088985998999999999719999999966205677889999896267-----367089
Q ss_pred EECCCCCCCCC-CHHHHCCC----C-CCCCHHHHHHHHHHHCHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 87677655664-47770466----9-999988999999993089999872599403630299999945999999999970
Q 001580 745 IIPQSPVLFSG-TVRFNLDP----F-SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 818 (1050)
Q Consensus 745 ~v~Q~~~lf~~-tv~~nl~~----~-~~~~~~~~~~~~~~~~l~~~i~~~p~gl~t~v~e~~~~LSgGqkqrl~lArall 818 (1050)
|+||+..++.. |+.+|+.. + ....+.++.++++...+. +++ +...+||||||||++||||++
T Consensus 74 ~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~----~~~~~LSgG~~qrv~ia~al~ 141 (200)
T d1sgwa_ 74 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL--------DLK----KKLGELSQGTIRRVQLASTLL 141 (200)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC--------CTT----SBGGGSCHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC--------CCC----CCCCCCCCCHHHHHHHHHHHH
T ss_conf 99501357888289999999997548863799999999874885--------630----126868971888899999886
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC-CEEEEEECCCHHHHHCCEEEEEEC
Q ss_conf 399899984667488999899999999987389-489985058103653198999959
Q 001580 819 RRSKILVLDEATAAVDVRTDALIQKTIREEFKS-CTMLIIAHRLNTIIDCDRILLLDS 875 (1050)
Q Consensus 819 ~~p~illLDEpts~lD~~~~~~i~~~l~~~~~~-~tvi~vtH~~~~~~~~d~i~vl~~ 875 (1050)
.+|+++||||||++||+.++..+++.|.++.++ +++|+++|+ .+..||++.+|++
T Consensus 142 ~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~--~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 142 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE--ELSYCDVNENLHK 197 (200)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS--CCTTSSEEEEGGG
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC--HHHHCCHHHHEEE
T ss_conf 4998999868620169999999999999998679999999916--2544161234010
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.6e-35 Score=272.11 Aligned_cols=198 Identities=19% Similarity=0.277 Sum_probs=158.1
Q ss_pred CEEEEEEEEEECCCCCCCCEEECEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEE------------CCE
Q ss_conf 18999489982899999831100088609979999959998289999999739899988706770------------928
Q 001580 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR------------GTV 108 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~~~L~~isL~i~~Ge~valvG~nGSGKSTLl~~L~G~~~~~~G~~~~~~------------~~I 108 (1050)
.++++|++++ ..|++|||+|++||+++|+|+||||||||+++|+|.. |++|++.... ...
T Consensus 3 il~~~dv~~~-------~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~ 74 (231)
T d1l7vc_ 3 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHR 74 (231)
T ss_dssp EEEEEEECCT-------TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHE
T ss_pred EEEEECCCCC-------CEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHC
T ss_conf 9999874157-------1555888899489899999899980999999994887-9955999999999869989998640
Q ss_pred EEEECCCCC-CCCCHHHHHCCCCCCC--HHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-
Q ss_conf 999247878-7634899861499999--889999999809378984099999631257998779789999999998702-
Q 001580 109 AYVPQVSWI-FNATVRDNILFGSAFE--PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYS- 184 (1050)
Q Consensus 109 g~v~Q~~~L-~~~TV~enI~~g~~~~--~~~~~~~~~~~~L~~~i~~l~~g~~t~ig~~g~~LSGGQKqRiaLARAL~~- 184 (1050)
+|++|+... +..++.+++.++.... .+...++++...+.+ .++....+||||||||++||||++.
T Consensus 75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~~~~LSgG~~Qrv~iA~al~~~ 143 (231)
T d1l7vc_ 75 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDD-----------KLGRSTNQLSGGEWQRVRLAAVVLQI 143 (231)
T ss_dssp EEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTT-----------TTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHH-----------HHCCCHHHCCHHHHHHHHHHHHHHHH
T ss_conf 2451213577442098876410014668999999998659876-----------76768445699889999999999851
Q ss_pred ------CCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHH-HHCCEEEEECCCEEEECCCHHHHHCCH
Q ss_conf ------9989999397888598999999999970015994899951591214-212978997598484405724330282
Q 001580 185 ------NSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFL-SQVDRIILVHEGMVKEEGTFEDLSNNG 257 (1050)
Q Consensus 185 ------~~~IllLDEpts~LD~~s~~~i~~~ll~~~~~~~T~IlvTH~l~~l-~~aD~I~vL~~G~i~~~g~~~eL~~~~ 257 (1050)
+|+|++|||||++||+.....+++.+......|.|+|++||++.++ +.||||++|++|++++.|+.+++.++.
T Consensus 144 ~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~~ 223 (231)
T d1l7vc_ 144 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP 223 (231)
T ss_dssp CTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCHH
T ss_pred CCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCCH
T ss_conf 71338998899971877778989999999999999867999999967799999979999999799899988999981886
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=9.4e-34 Score=264.70 Aligned_cols=182 Identities=23% Similarity=0.394 Sum_probs=142.0
Q ss_pred CEEEEEEEEEECCCCCCCCEEECEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEE-------EECCEEEEEC
Q ss_conf 189994899828999998311000886099799999599982899999997398999887067-------7092899924
Q 001580 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------IRGTVAYVPQ 113 (1050)
Q Consensus 41 ~i~~~~~~f~~~~~~~~~~L~~isL~i~~Ge~valvG~nGSGKSTLl~~L~G~~~~~~G~~~~-------~~~~Ig~v~Q 113 (1050)
-|+++|++|+|+ +++|+++||++++|++++|+|+||||||||+++|+|.++|++|.+.. .++.++|+||
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~ 77 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPE 77 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECS
T ss_pred EEEEEEEEEEEC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHHCCCEEEEEE
T ss_conf 599998999939----9288420889859989999999997199999999662056778899998962673670899950
Q ss_pred CCCCC-CCCHHHHHCC-----CCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 78787-6348998614-----99999889999999809378984099999631257998779789999999998702998
Q 001580 114 VSWIF-NATVRDNILF-----GSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 187 (1050)
Q Consensus 114 ~~~L~-~~TV~enI~~-----g~~~~~~~~~~~~~~~~L~~~i~~l~~g~~t~ig~~g~~LSGGQKqRiaLARAL~~~~~ 187 (1050)
++.++ ..|+.+++.+ +...+..+...+.+... .+. +.....+||||||||++|||||+.+|+
T Consensus 78 ~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~------~~~------~~~~~~~LSgG~~qrv~ia~al~~~~~ 145 (200)
T d1sgwa_ 78 EIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVE------VLD------LKKKLGELSQGTIRRVQLASTLLVNAE 145 (200)
T ss_dssp SCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTT------CCC------TTSBGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCC------CCC------CCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 13578882899999999975488637999999998748------856------301268689718888999998864998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCC-CCEEEEECCCCCHHHHCCEEEEECC
Q ss_conf 99993978885989999999999700159-9489995159121421297899759
Q 001580 188 VFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQVDRIILVHE 241 (1050)
Q Consensus 188 IllLDEpts~LD~~s~~~i~~~ll~~~~~-~~T~IlvTH~l~~l~~aD~I~vL~~ 241 (1050)
++||||||++||+.+++.+++.+...... +.++|..+|+ +..||++.+|++
T Consensus 146 llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~---l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 146 IYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE---LSYCDVNENLHK 197 (200)
T ss_dssp EEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC---CTTSSEEEEGGG
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECH---HHHCCHHHHEEE
T ss_conf 9998686201699999999999999986799999999162---544161234010
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.88 E-value=1.3e-16 Score=136.85 Aligned_cols=313 Identities=12% Similarity=0.113 Sum_probs=203.4
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999985568-9999999999999998985543455522434447888269--99999999999999999999999
Q 001580 329 FKVLSRYKDALGGL-WVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLF--YNTIYSLLSFGQVLVTLANSYWL 405 (1050)
Q Consensus 329 ~~~l~~y~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~~~~~ 405 (1050)
|+.++++++.+... +.+++.+++.++...+....|..++...|........... +...+..+.+...++.+...++.
T Consensus 1 Wk~~krl~~~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (319)
T d3b60a2 1 WQTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCI 80 (319)
T ss_dssp CHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 96899999999999999999999999999999999999999999874468778999999999999997645335466544
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999998199000203694599999995498999999999999999999999999999999999999
Q 001580 406 IISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLW 485 (1050)
Q Consensus 406 ~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~i~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (1050)
...+.+...+++.++++++++.|..+|+++++|++++++++|+..+...+.......+..+..++..++.+....+....
T Consensus 81 ~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l 160 (319)
T d3b60a2 81 SWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSI 160 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 34310001100047777650101111023332211111212121000011111200112334456688888765200210
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999984116268799998833999999602999999999999999999999987767
Q 001580 486 AIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANR 565 (1050)
Q Consensus 486 ~~~~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (1050)
+++..+++.........+...+..+......++..+...|.++|++++|+++.+++..+.+.+..+...+..........
T Consensus 161 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (319)
T d3b60a2 161 ILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASS 240 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 25668999999887666687787898876445677887776248723531110102456666653135677888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999999999999--94396530356799999999999999999999999999999999999999962118
Q 001580 566 WLAIRLEIVGGLMIWLTATFAV--VQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIEL 643 (1050)
Q Consensus 566 ~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Ri~~~~~~ 643 (1050)
+..........+...++..+.. ...+..+ .+.+...+.+...+..|+..+.......+++..+.+|+.++++.
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it-----~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~ 315 (319)
T d3b60a2 241 ISDPIIQLIASLALAFVLYAASFPSVMDSLT-----AGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDS 315 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSTTSSSH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 4064010000002379999999999809978-----99999999999999999999999999999999999999999669
Q ss_pred CCC
Q ss_conf 999
Q 001580 644 PSE 646 (1050)
Q Consensus 644 ~~e 646 (1050)
|+|
T Consensus 316 ~~E 318 (319)
T d3b60a2 316 EQE 318 (319)
T ss_dssp CCS
T ss_pred CCC
T ss_conf 989
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.82 E-value=1.1e-15 Score=130.02 Aligned_cols=297 Identities=11% Similarity=0.141 Sum_probs=184.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CH---HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999898554345552243444788-82---6999-----99999999999999999999999999999
Q 001580 343 WVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTH-GP---LFYN-----TIYSLLSFGQVLVTLANSYWLIISSLYAA 413 (1050)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~---~~~~-----~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 413 (1050)
+.+++.+++.++...+....|..++...|....... .. .... ..+.++.+...+..+...++....+.+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 93 (323)
T d2hyda2 14 YRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKIL 93 (323)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999986267742155689999999999999999999999999999999998556
Q ss_pred HHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999819900020369459999999549899999999999999999999999999999999999999999999
Q 001580 414 KRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLL 493 (1050)
Q Consensus 414 ~~l~~~~~~~ll~~p~~~f~~~~~G~i~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lli~ 493 (1050)
.+++.++++++++.|..+|+++++|++++++++|+..+...........+..+..++..++.+..+.+...+..++..++
T Consensus 94 ~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~~ 173 (323)
T d2hyda2 94 YDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPF 173 (323)
T ss_dssp HHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHHHTTHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77888876654023321000122211000111133210011134542011146653346544000014688899998877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999998411626879999883399999960299999999999999999999998776799999999
Q 001580 494 FYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEI 573 (1050)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (1050)
.+.....+.+..++..+......++..+.+.|.++|++++|+++.+++..+.+.+..+...+..........+.......
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~ 253 (323)
T d2hyda2 174 YILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINT 253 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 77777641233320267789899999978788755970234676411100233022311110156776520000111110
Q ss_pred HH---HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99---9999999999999439653035679999999999999999999999999999999999999996211899
Q 001580 574 VG---GLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPS 645 (1050)
Q Consensus 574 ~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Ri~~~~~~~~ 645 (1050)
+. ..+....+.+.+. .+..+. +.+...+.+...+..++..+.......+....+.+|+.++++.++
T Consensus 254 ~~~~~~~~~l~~~~~~~~-~g~~s~-----g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e~ 322 (323)
T d2hyda2 254 VTDIGPIIVIGVGAYLAI-SGSITV-----GTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDY 322 (323)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTSCCH-----HHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHHHH-CCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 120558999999999998-499889-----999999999999999999999999999999999999999977999
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.55 E-value=4e-16 Score=133.13 Aligned_cols=159 Identities=13% Similarity=0.047 Sum_probs=104.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHH
Q ss_conf 99999799999889999984046688628999896068989588752127876776556644777046699999889999
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWE 774 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~~~~ 774 (1050)
+++|+||||||||||++.++|.++|+.|.+.+.+.+....+...........++...++..+...+.....
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 72 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGS--------- 72 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETT---------
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_conf 89999899938999999998148888646998771328888765311233667778875411345544302---------
Q ss_pred HHHHHCHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCC
Q ss_conf 999930899998725994036302999999459999999999703998999846674889998999999999873--894
Q 001580 775 ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSC 852 (1050)
Q Consensus 775 ~~~~~~l~~~i~~~p~gl~t~v~e~~~~LSgGqkqrl~lArall~~p~illLDEpts~lD~~~~~~i~~~l~~~~--~~~ 852 (1050)
. +.+... ..+++|++++.++++++.++|+++++|||+...+ ....+.+.+.+.. .++
T Consensus 73 ----~-----------~~~~~~----~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l~~~~~ 131 (178)
T d1ye8a1 73 ----Y-----------GVNVQY----FEELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIMHDPNV 131 (178)
T ss_dssp ----E-----------EECHHH----HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHHHTCTTS
T ss_pred ----H-----------HCCCCH----HHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCH--HHHHHHHHHHHHHCCCCC
T ss_conf ----3-----------037625----6653201378999999740997423027773100--457999999987505797
Q ss_pred EEEEEECCCHHHHHCCEEEEEECCEEEEECC
Q ss_conf 8998505810365319899995977998439
Q 001580 853 TMLIIAHRLNTIIDCDRILLLDSGRVLEYDT 883 (1050)
Q Consensus 853 tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~ 883 (1050)
++|+++|+.+....|+++..+.+|++++.+.
T Consensus 132 ~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 132 NVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp EEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred EEEEEECCHHHHHHHCEEEEEECCEEEEECC
T ss_conf 8999974477898636599871999999899
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.35 E-value=7.5e-12 Score=101.24 Aligned_cols=72 Identities=22% Similarity=0.322 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCCHHHHHCCEEEEE
Q ss_conf 9994599999999997----039989998466748899989999999998738-94899850581036531989999
Q 001580 802 NFSVGQRQLLSLSRAL----LRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIIDCDRILLL 873 (1050)
Q Consensus 802 ~LSgGqkqrl~lAral----l~~p~illLDEpts~lD~~~~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~~d~i~vl 873 (1050)
.+|||||.++++|-.+ ..++++++||||+++||+.....+.+.|.+... +.-+|++||+...+..+|+++.+
T Consensus 332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 32230479999999999954799977999688777899999999999999728998899995878999736617999
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.27 E-value=3.4e-13 Score=111.30 Aligned_cols=147 Identities=14% Similarity=0.006 Sum_probs=93.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEC-------CEEEEEC-----CCCCCCCCHHHHHCCCCCCCHHHHHH
Q ss_conf 99999599982899999997398999887067709-------2899924-----78787634899861499999889999
Q 001580 72 LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG-------TVAYVPQ-----VSWIFNATVRDNILFGSAFEPARYEK 139 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~~~~~G~~~~~~~-------~Ig~v~Q-----~~~L~~~TV~enI~~g~~~~~~~~~~ 139 (1050)
.++|+|+||||||||++.|+|++++..|+...-.. ..++..+ ...+...+......++..
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 73 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSY-------- 73 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTE--------
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_conf 899998999389999999981488886469987713288887653112336677788754113455443023--------
Q ss_pred HHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCC-CCCC
Q ss_conf 999809378984099999631257998779789999999998702998999939788859899999999997001-5994
Q 001580 140 AIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGK 218 (1050)
Q Consensus 140 ~~~~~~L~~~i~~l~~g~~t~ig~~g~~LSGGQKqRiaLARAL~~~~~IllLDEpts~LD~~s~~~i~~~ll~~~-~~~~ 218 (1050)
.+......+++|+++|.++++++..+|+++++|||....+. .+...+.+.... ..+.
T Consensus 74 --------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~--~~~~~~~l~~~l~~~~~ 131 (178)
T d1ye8a1 74 --------------------GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELF--SKKFRDLVRQIMHDPNV 131 (178)
T ss_dssp --------------------EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG--CHHHHHHHHHHHTCTTS
T ss_pred --------------------HCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHH--HHHHHHHHHHHHCCCCC
T ss_conf --------------------03762566532013789999997409974230277731004--57999999987505797
Q ss_pred EEEEECCCCCHHHHCCEEEEECCCEEEECC
Q ss_conf 899951591214212978997598484405
Q 001580 219 TRVLVTNQLHFLSQVDRIILVHEGMVKEEG 248 (1050)
Q Consensus 219 T~IlvTH~l~~l~~aD~I~vL~~G~i~~~g 248 (1050)
++|+++|+......+|++..+.+|++..-+
T Consensus 132 ~il~~~h~~~~~~~~~~i~~~~~~~i~~v~ 161 (178)
T d1ye8a1 132 NVVATIPIRDVHPLVKEIRRLPGAVLIELT 161 (178)
T ss_dssp EEEEECCSSCCSHHHHHHHTCTTCEEEECC
T ss_pred EEEEEECCHHHHHHHCEEEEEECCEEEEEC
T ss_conf 899997447789863659987199999989
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.11 E-value=1.6e-09 Score=83.88 Aligned_cols=75 Identities=21% Similarity=0.336 Sum_probs=63.5
Q ss_pred CCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEE--EC
Q ss_conf 9994599999999997----03998999846674889998999999999873894899850581036531989999--59
Q 001580 802 NFSVGQRQLLSLSRAL----LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLL--DS 875 (1050)
Q Consensus 802 ~LSgGqkqrl~lAral----l~~p~illLDEpts~lD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl--~~ 875 (1050)
.+|+|+|+.+.++..+ ..++.++++|||-++|+|.....+.+.|++..++.-+|++||+...++.+|+++.+ ++
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~~ 298 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVN 298 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEEC
T ss_conf 02577766777776655654226744554320335797899999999998554887999989889997324289999969
Q ss_pred C
Q ss_conf 7
Q 001580 876 G 876 (1050)
Q Consensus 876 G 876 (1050)
|
T Consensus 299 g 299 (308)
T d1e69a_ 299 G 299 (308)
T ss_dssp S
T ss_pred C
T ss_conf 9
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.84 E-value=3.7e-08 Score=73.66 Aligned_cols=77 Identities=19% Similarity=0.229 Sum_probs=61.7
Q ss_pred CCCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHCCEEEEE--
Q ss_conf 87797899999999987----029989999397888598999999999970015994899951591214212978997--
Q 001580 166 VNISGGQKQRVSMARAV----YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV-- 239 (1050)
Q Consensus 166 ~~LSGGQKqRiaLARAL----~~~~~IllLDEpts~LD~~s~~~i~~~ll~~~~~~~T~IlvTH~l~~l~~aD~I~vL-- 239 (1050)
..+|+|||+...++..+ ...+.++++|||-++|+|...+.+.+.+ +....+.-+|++||.+.+++.+|+++.+
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l-~~~~~~~QviitTHsp~~~~~~d~~~~v~~ 296 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLL-KENSKHTQFIVITHNKIVMEAADLLHGVTM 296 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHH-HHHTTTSEEEEECCCTTGGGGCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHH-HHHCCCCEEEEEECCHHHHHHCCCEEEEEE
T ss_conf 1025777667777766556542267445543203357978999999999-985548879999898899973242899999
Q ss_pred CCCE
Q ss_conf 5984
Q 001580 240 HEGM 243 (1050)
Q Consensus 240 ~~G~ 243 (1050)
.+|.
T Consensus 297 ~~g~ 300 (308)
T d1e69a_ 297 VNGV 300 (308)
T ss_dssp SSSC
T ss_pred ECCE
T ss_conf 6999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.62 E-value=1.5e-07 Score=69.11 Aligned_cols=74 Identities=20% Similarity=0.276 Sum_probs=58.4
Q ss_pred CCCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHCCEEEEE
Q ss_conf 87797899999999987----029989999397888598999999999970015994899951591214212978997
Q 001580 166 VNISGGQKQRVSMARAV----YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV 239 (1050)
Q Consensus 166 ~~LSGGQKqRiaLARAL----~~~~~IllLDEpts~LD~~s~~~i~~~ll~~~~~~~T~IlvTH~l~~l~~aD~I~vL 239 (1050)
..||||||.+++||-.+ +..+++++||||+++||+..+..+.+.+......+.-+|++||++.+++.||+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 332230479999999999954799977999688777899999999999999728998899995878999736617999
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.69 E-value=0.00086 Score=41.10 Aligned_cols=48 Identities=13% Similarity=0.149 Sum_probs=32.6
Q ss_pred CCCCEEEEECCCCCCCHHHHHHH-HHHHHHHC-CCCEEEEEECCCHHHHH
Q ss_conf 39989998466748899989999-99999873-89489985058103653
Q 001580 819 RRSKILVLDEATAAVDVRTDALI-QKTIREEF-KSCTMLIIAHRLNTIID 866 (1050)
Q Consensus 819 ~~p~illLDEpts~lD~~~~~~i-~~~l~~~~-~~~tvi~vtH~~~~~~~ 866 (1050)
.+..++|+||...|-++.....+ +..+..+. .++.++++||..+....
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~l 162 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTAL 162 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHTC
T ss_pred CCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHHHH
T ss_conf 97727855454568623320025888888886237613786520233322
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.46 E-value=0.0003 Score=44.53 Aligned_cols=48 Identities=13% Similarity=0.108 Sum_probs=31.9
Q ss_pred CCCCCEEEEECCCCCCCHHHHH-HHHHHHHHHC-C-CCEEEEEECCCHHHH
Q ss_conf 0399899984667488999899-9999999873-8-948998505810365
Q 001580 818 LRRSKILVLDEATAAVDVRTDA-LIQKTIREEF-K-SCTMLIIAHRLNTII 865 (1050)
Q Consensus 818 l~~p~illLDEpts~lD~~~~~-~i~~~l~~~~-~-~~tvi~vtH~~~~~~ 865 (1050)
..+..++|+||+..|-++.... ..+..+..+. + .+.++++||..+...
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~~ 168 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ 168 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHH
T ss_conf 546608853222358774566678987645432045442898524687764
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.42 E-value=0.0012 Score=40.00 Aligned_cols=150 Identities=13% Similarity=0.104 Sum_probs=72.3
Q ss_pred CCEEEEEEEEEECC----CCCCCCEEECEEEEECCCEEEEECCCCCCHHHHHHHHHCCC-CCCCCCEEEEECCEEEEECC
Q ss_conf 91899948998289----99998311000886099799999599982899999997398-99988706770928999247
Q 001580 40 PAISIRNGYFSWDS----KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL-PPVSDASAVIRGTVAYVPQV 114 (1050)
Q Consensus 40 ~~i~~~~~~f~~~~----~~~~~~L~~isL~i~~Ge~valvG~nGSGKSTLl~~L~G~~-~~~~G~~~~~~~~Ig~v~Q~ 114 (1050)
+.+.++++. -|- ..+..+=.+++++ +.+.++.|.|+|.|||||+++.+.=.. -...|..+-. .. +-++--
T Consensus 10 ~~l~i~~~r--HPlle~~~~~~~VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA-~~-a~~~~~ 84 (234)
T d1wb9a2 10 PGIRITEGR--HPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPA-QK-VEIGPI 84 (234)
T ss_dssp SCEEEEEEC--CTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSS-SE-EEECCC
T ss_pred CCEEEEEEE--CCEEECCCCCCCCCEEEEEC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEC-CC-EECCCC
T ss_conf 968999737--87797446998264057988-99539999546731368999987999999872976741-76-661344
Q ss_pred CCCC-CCCHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 8787-634899861499999889999999809378984099999631257998779789999999998702998999939
Q 001580 115 SWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 193 (1050)
Q Consensus 115 ~~L~-~~TV~enI~~g~~~~~~~~~~~~~~~~L~~~i~~l~~g~~t~ig~~g~~LSGGQKqRiaLARAL~~~~~IllLDE 193 (1050)
..++ .--..|++.-|. .-=..+-+|+.-.---..+..++++||
T Consensus 85 d~I~~~~~~~d~~~~~~------------------------------------S~F~~E~~~~~~il~~~~~~sLvliDE 128 (234)
T d1wb9a2 85 DRIFTRVGAADDLASGR------------------------------------STFMVEMTETANILHNATEYSLVLMDE 128 (234)
T ss_dssp CEEEEEEC-----------------------------------------------CHHHHHHHHHHHHHCCTTEEEEEES
T ss_pred HHHEEEECCCCCCCCCH------------------------------------HHHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 20234874675343653------------------------------------189999999999997454660885322
Q ss_pred CCCCCCHHHHHHHHHHHHCCC-C-CCCEEEEECCCCCHH
Q ss_conf 788859899999999997001-5-994899951591214
Q 001580 194 PLSALDAHVGRQVFDRCIRGE-L-SGKTRVLVTNQLHFL 230 (1050)
Q Consensus 194 pts~LD~~s~~~i~~~ll~~~-~-~~~T~IlvTH~l~~l 230 (1050)
+..+=+|.....+...++... . .+..++++||.....
T Consensus 129 ~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 129 IGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp CCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH
T ss_conf 235877456667898764543204544289852468776
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.42 E-value=0.0016 Score=39.07 Aligned_cols=129 Identities=12% Similarity=0.132 Sum_probs=67.2
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHCCC-CCCCCCEEEEECCEEEEECCCCCC-CCCHHHHHCCCCCCCHHHHHHHH
Q ss_conf 0886099799999599982899999997398-999887067709289992478787-63489986149999988999999
Q 001580 64 NLDIPVGSLVAIVGGTGEGKTSLISAMLGEL-PPVSDASAVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAI 141 (1050)
Q Consensus 64 sL~i~~Ge~valvG~nGSGKSTLl~~L~G~~-~~~~G~~~~~~~~Ig~v~Q~~~L~-~~TV~enI~~g~~~~~~~~~~~~ 141 (1050)
|+.+. ++++.|.|||.+||||+++.+.=.. -...|..+-. .-+-+|--..++ .--..|++.-|.
T Consensus 30 di~~~-~~~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~vpA--~~~~i~~~d~I~~~~~~~d~~~~~~----------- 95 (224)
T d1ewqa2 30 DLEMA-HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPA--EEAHLPLFDGIYTRIGASDDLAGGK----------- 95 (224)
T ss_dssp EEEES-SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSS--SEEEECCCSEEEEECCC------CC-----------
T ss_pred EEEEC-CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEC--CCEEEEECCEEEEEECCCCCCCCCC-----------
T ss_conf 58847-867999788734532345565899999852504613--7519940116999987776023783-----------
Q ss_pred HHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCC-CCCCEE
Q ss_conf 9809378984099999631257998779789999999998702998999939788859899999999997001-599489
Q 001580 142 DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTR 220 (1050)
Q Consensus 142 ~~~~L~~~i~~l~~g~~t~ig~~g~~LSGGQKqRiaLARAL~~~~~IllLDEpts~LD~~s~~~i~~~ll~~~-~~~~T~ 220 (1050)
.+. ..+-+|+.-.---..+..++|+||...+=++.....+...++... ..+.+.
T Consensus 96 ------------------------StF-~~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~ 150 (224)
T d1ewqa2 96 ------------------------STF-MVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYT 150 (224)
T ss_dssp ------------------------SHH-HHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEE
T ss_pred ------------------------CHH-HHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCE
T ss_conf ------------------------078-9867889877502897727855454568623320025888888886237613
Q ss_pred EEECCCCCHHH
Q ss_conf 99515912142
Q 001580 221 VLVTNQLHFLS 231 (1050)
Q Consensus 221 IlvTH~l~~l~ 231 (1050)
+++||..+...
T Consensus 151 i~tTH~~eL~~ 161 (224)
T d1ewqa2 151 LFATHYFELTA 161 (224)
T ss_dssp EEECCCHHHHT
T ss_pred EEEEECHHHHH
T ss_conf 78652023332
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.08 E-value=0.0081 Score=33.85 Aligned_cols=35 Identities=11% Similarity=0.191 Sum_probs=28.4
Q ss_pred CCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 81000238963996999997999998899999840
Q 001580 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 715 (1050)
Q Consensus 681 ~~l~~isl~i~~Ge~~~ivG~~GaGKSTll~~l~g 715 (1050)
+.|+++..-+.+|+.+.|.|++|+||||++.-+.-
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 66888746978980899994799979999999997
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.54 E-value=0.011 Score=32.89 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=19.5
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 63996999997999998899999840
Q 001580 690 IPPSDKVGIVGRTGAGKSSMLNTLFR 715 (1050)
Q Consensus 690 i~~Ge~~~ivG~~GaGKSTll~~l~g 715 (1050)
+.||+.+.|.|+.|+|||||+.-+.-
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 55895899992899989999999999
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.29 E-value=0.018 Score=31.25 Aligned_cols=113 Identities=16% Similarity=0.218 Sum_probs=62.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EECCEECCCCCHHHHHHHEEEECCCCCCCCCCHHHHCCCCCCCCH
Q ss_conf 3996999997999998899999840466886289-998960689895887521278767765566447770466999998
Q 001580 691 PPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI-LIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSD 769 (1050)
Q Consensus 691 ~~Ge~~~ivG~~GaGKSTll~~l~g~~~p~~G~i-~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~ 769 (1050)
.++-.+-+.||+||||||++..++..+.....+| .+. -++. . .+.+-....+.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiE-dPiE-~-----------------~~~~~~q~~v~------- 209 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVE-DPIE-F-----------------DIDGIGQTQVN------- 209 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEE-SSCC-S-----------------CCSSSEEEECB-------
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEC-CCCC-C-----------------CCCCCCEEEEC-------
T ss_conf 41054898767877744779998666257874699962-6743-4-----------------56788702655-------
Q ss_pred HHHHHHHHHHCHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 89999999930899998725994036302999999459999999999703998999846674889998999999999873
Q 001580 770 ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF 849 (1050)
Q Consensus 770 ~~~~~~~~~~~l~~~i~~~p~gl~t~v~e~~~~LSgGqkqrl~lArall~~p~illLDEpts~lD~~~~~~i~~~l~~~~ 849 (1050)
...+.+ ---++..+|=++|+++++.|.. |.++.....++-.
T Consensus 210 ---------------------------~~~~~~------~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~aa~--- 250 (401)
T d1p9ra_ 210 ---------------------------PRVDMT------FARGLRAILRQDPDVVMVGEIR---DLETAQIAVQASL--- 250 (401)
T ss_dssp ---------------------------GGGTBC------HHHHHHHHGGGCCSEEEESCCC---SHHHHHHHHHHHH---
T ss_pred ---------------------------CCCCCC------HHHHHHHHHHHCCCEEEECCCC---CHHHHHHHHHHHH---
T ss_conf ---------------------------876779------9999999984138889845768---7599999999972---
Q ss_pred CCCEEEEEECCCHHHHHCC
Q ss_conf 8948998505810365319
Q 001580 850 KSCTMLIIAHRLNTIIDCD 868 (1050)
Q Consensus 850 ~~~tvi~vtH~~~~~~~~d 868 (1050)
.|..|+.+-|--+.....+
T Consensus 251 tGhlV~tTlHa~~a~~~~~ 269 (401)
T d1p9ra_ 251 TGHLVMSTLHTNTAVGAVT 269 (401)
T ss_dssp TTCEEEEEECCSSSHHHHH
T ss_pred CCCEEEEEECCCCHHHHHH
T ss_conf 4985899833676676654
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.27 E-value=0.0019 Score=38.56 Aligned_cols=36 Identities=25% Similarity=0.335 Sum_probs=30.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 996999997999998899999840466886289998
Q 001580 692 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 727 (1050)
Q Consensus 692 ~Ge~~~ivG~~GaGKSTll~~l~g~~~p~~G~i~~~ 727 (1050)
+|+..+++|+||+|||||++.|.+......|.|.-.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~ 129 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEK 129 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCCCC
T ss_conf 698089978898778888773053555010684200
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.22 E-value=0.0022 Score=38.11 Aligned_cols=32 Identities=28% Similarity=0.394 Sum_probs=26.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 99799999599982899999997398999887
Q 001580 69 VGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 100 (1050)
Q Consensus 69 ~Ge~valvG~nGSGKSTLl~~L~G~~~~~~G~ 100 (1050)
+|+..+++|++|.|||||+|.|.|....-.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~ 125 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSE 125 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCC
T ss_conf 69808997889877888877305355501068
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.07 E-value=0.0058 Score=34.92 Aligned_cols=39 Identities=26% Similarity=0.457 Sum_probs=31.2
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 963996999997999998899999840466886289998
Q 001580 689 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 727 (1050)
Q Consensus 689 ~i~~Ge~~~ivG~~GaGKSTll~~l~g~~~p~~G~i~~~ 727 (1050)
-+..+..+.|.|++||||||++++|++.++|+.=-|.+.
T Consensus 162 ~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiE 200 (323)
T d1g6oa_ 162 GIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIE 200 (323)
T ss_dssp HHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE
T ss_pred HHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEECC
T ss_conf 998378889994035662578999865301456233113
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.98 E-value=0.038 Score=28.87 Aligned_cols=145 Identities=14% Similarity=0.178 Sum_probs=66.0
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC---CCCCCCEEEEECCEEEEECCCCCCCCCHHHHH-CCCCCCCHHHHHHHHH
Q ss_conf 6099799999599982899999997398---99988706770928999247878763489986-1499999889999999
Q 001580 67 IPVGSLVAIVGGTGEGKTSLISAMLGEL---PPVSDASAVIRGTVAYVPQVSWIFNATVRDNI-LFGSAFEPARYEKAID 142 (1050)
Q Consensus 67 i~~Ge~valvG~nGSGKSTLl~~L~G~~---~~~~G~~~~~~~~Ig~v~Q~~~L~~~TV~enI-~~g~~~~~~~~~~~~~ 142 (1050)
+.+|+++.|.|+.|+|||||+-.|+--+ .+.-+......+.+-|+.-+... ..+.+.+ ..+...+........
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~~~--~~~~~Rl~~~~~~~~~~~~~~~~- 102 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPP--TAIHHRLHALGAHLSAEERQAVA- 102 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCH--HHHHHHHHHHHTTSCHHHHHHHH-
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHH--HHHHHHHHHHHHCCCHHHHHCCC-
T ss_conf 558958999928999899999999999976997211123578736898512349--99999999986236866653123-
Q ss_pred HHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC-----CHHHHHHHHHHHHCCC-CC
Q ss_conf 80937898409999963125799877978999999999870299899993978885-----9899999999997001-59
Q 001580 143 VTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSAL-----DAHVGRQVFDRCIRGE-LS 216 (1050)
Q Consensus 143 ~~~L~~~i~~l~~g~~t~ig~~g~~LSGGQKqRiaLARAL~~~~~IllLDEpts~L-----D~~s~~~i~~~ll~~~-~~ 216 (1050)
..+..++... ....... ....-.+. .-..+++++++|-..... |......+...+.... ..
T Consensus 103 -----~~~~~~~~~~-----~~~~~~~--~~~~~~~~-~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~ 169 (274)
T d1nlfa_ 103 -----DGLLIQPLIG-----SLPNIMA--PEWFDGLK-RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADT 169 (274)
T ss_dssp -----HHEEECCCTT-----SCCCTTS--HHHHHHHH-HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHH
T ss_pred -----CCCEECCCCC-----CCCHHHH--HHHHHHHH-HHCCCCCEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf -----3323214567-----4203578--99999988-752676589628135422665232256899998877776447
Q ss_pred CCEEEEECCCC
Q ss_conf 94899951591
Q 001580 217 GKTRVLVTNQL 227 (1050)
Q Consensus 217 ~~T~IlvTH~l 227 (1050)
+.+++++.|-.
T Consensus 170 ~~~vi~v~H~~ 180 (274)
T d1nlfa_ 170 GCSIVFLHHAS 180 (274)
T ss_dssp CCEEEEEEEC-
T ss_pred CCCEEHHHHCC
T ss_conf 97540131005
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.97 E-value=0.0022 Score=38.03 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=19.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 96999997999998899999840466
Q 001580 693 SDKVGIVGRTGAGKSSMLNTLFRIVE 718 (1050)
Q Consensus 693 Ge~~~ivG~~GaGKSTll~~l~g~~~ 718 (1050)
|.++.|+||+||||||+.+.|...++
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 74999989999999999999984589
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=95.96 E-value=0.016 Score=31.57 Aligned_cols=35 Identities=17% Similarity=0.350 Sum_probs=28.5
Q ss_pred CCEEECEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 83110008860997999995999828999999973
Q 001580 58 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG 92 (1050)
Q Consensus 58 ~~L~~isL~i~~Ge~valvG~nGSGKSTLl~~L~G 92 (1050)
+.|+.+..-+.+|+++.|.|++|+||||++.-++-
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 66888746978980899994799979999999997
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.93 E-value=8.8e-05 Score=48.50 Aligned_cols=36 Identities=14% Similarity=0.148 Sum_probs=27.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEE
Q ss_conf 999997999998899999840466886289998960
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFD 730 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~~p~~G~i~~~g~~ 730 (1050)
.+.|.||+|+|||||++.+...+....+.+.+.+.+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~ 38 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTE 38 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 999988999719999999999999779979999845
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=95.77 E-value=0.046 Score=28.24 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=19.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3996999997999998899999840466
Q 001580 691 PPSDKVGIVGRTGAGKSSMLNTLFRIVE 718 (1050)
Q Consensus 691 ~~Ge~~~ivG~~GaGKSTll~~l~g~~~ 718 (1050)
.+-.+++++||+|+||||.+-=|...+.
T Consensus 7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 7 KAPFVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp CTTEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9997999989999998999999999999
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.75 E-value=0.046 Score=28.19 Aligned_cols=26 Identities=35% Similarity=0.505 Sum_probs=13.4
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 60997999995999828999999973
Q 001580 67 IPVGSLVAIVGGTGEGKTSLISAMLG 92 (1050)
Q Consensus 67 i~~Ge~valvG~nGSGKSTLl~~L~G 92 (1050)
+++|+++.|.|++|||||+++.-++-
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 86984999991899999999999999
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.75 E-value=0.046 Score=28.19 Aligned_cols=63 Identities=13% Similarity=0.064 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHH
Q ss_conf 978999999999870299899993978885989999999999700159948999515912142
Q 001580 169 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS 231 (1050)
Q Consensus 169 SGGQKqRiaLARAL~~~~~IllLDEpts~LD~~s~~~i~~~ll~~~~~~~T~IlvTH~l~~l~ 231 (1050)
...++.....+...+.+++++++.=..+.-+.......|...+.....++.+|+|.+..+..+
T Consensus 64 ~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~ 126 (161)
T d2gj8a1 64 DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITG 126 (161)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHC
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCHHHHHH
T ss_conf 520247899999998741332011025654203455544455542014101020465444335
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.67 E-value=0.049 Score=27.98 Aligned_cols=45 Identities=18% Similarity=0.417 Sum_probs=33.3
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHH
Q ss_conf 3998999846674889998999999999873894899850581036
Q 001580 819 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI 864 (1050)
Q Consensus 819 ~~p~illLDEpts~lD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~ 864 (1050)
.+..++++||.-. +.......+.+.+......+.+|++|++.+.+
T Consensus 130 ~~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 130 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 174 (252)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred CCCEEEEECCCCC-CCCCCCHHHHCCCCCCCCCCCCEEEECCCCCH
T ss_conf 8724999424333-45431112210022135664300010211100
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.67 E-value=0.0029 Score=37.12 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=12.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599982899999997398
Q 001580 72 LVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
+++|+|++|||||||++.|+..+
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l 26 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPAL 26 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89999189998999999999999
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.66 E-value=0.0047 Score=35.60 Aligned_cols=26 Identities=23% Similarity=0.416 Sum_probs=21.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99699999799999889999984046
Q 001580 692 PSDKVGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 692 ~Ge~~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
.|+.+.|.||+||||||+.+.|...+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98599998899998899999999995
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=95.65 E-value=0.05 Score=27.93 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=18.9
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 6399699999799999889999984046
Q 001580 690 IPPSDKVGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 690 i~~Ge~~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
-.+..+++++||+|+||||.+-=|...+
T Consensus 8 ~~~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 8 PEPPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9999899998999998899999999999
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.59 E-value=0.0036 Score=36.45 Aligned_cols=27 Identities=22% Similarity=0.572 Sum_probs=24.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 979999959998289999999739899
Q 001580 70 GSLVAIVGGTGEGKTSLISAMLGELPP 96 (1050)
Q Consensus 70 Ge~valvG~nGSGKSTLl~~L~G~~~~ 96 (1050)
|.+++|+||+||||||+++.|...++.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 749999899999999999999845899
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=95.58 E-value=0.025 Score=30.16 Aligned_cols=53 Identities=21% Similarity=0.360 Sum_probs=32.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC--CCCCCEEEECCEECCCCCHHHHHHHEEEECC
Q ss_conf 99999799999889999984046--6886289998960689895887521278767
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIV--ELERGRILIDGFDIAKFGLMDLRKILGIIPQ 748 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~--~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q 748 (1050)
-++|+|+.|+|||||+..|+..- ....|++. +|..+.+..+....+.+++-+.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~~~ 58 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVRTG 58 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCSCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCH-HCCCCCCCHHHHHHHCCEEEEE
T ss_conf 999994889809999999999709755306622-2211356269888738768751
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.50 E-value=0.047 Score=28.15 Aligned_cols=29 Identities=31% Similarity=0.314 Sum_probs=19.0
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 60997999995999828999999973989
Q 001580 67 IPVGSLVAIVGGTGEGKTSLISAMLGELP 95 (1050)
Q Consensus 67 i~~Ge~valvG~nGSGKSTLl~~L~G~~~ 95 (1050)
++...-+.|.|++|+|||++++++++++.
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 99887578878998763047788787718
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.44 E-value=0.0044 Score=35.83 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=11.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999997999998899999840466
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIVE 718 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~~ 718 (1050)
+++|+|++|||||||+.-|...+.
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~ 26 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAV 26 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999980999989999999999998
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.40 E-value=0.0035 Score=36.57 Aligned_cols=21 Identities=29% Similarity=0.665 Sum_probs=11.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959998289999999739
Q 001580 73 VAIVGGTGEGKTSLISAMLGE 93 (1050)
Q Consensus 73 valvG~nGSGKSTLl~~L~G~ 93 (1050)
++|+|++|+|||||++.|.|.
T Consensus 26 I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 26 IALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHCCC
T ss_conf 999899998799999985298
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.32 E-value=0.0021 Score=38.19 Aligned_cols=36 Identities=28% Similarity=0.394 Sum_probs=30.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 996999997999998899999840466886289998
Q 001580 692 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 727 (1050)
Q Consensus 692 ~Ge~~~ivG~~GaGKSTll~~l~g~~~p~~G~i~~~ 727 (1050)
+|....++|+||+|||||++.|.+......|.|.-.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~ 131 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEH 131 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCCC
T ss_conf 356499987787348789875151767640355533
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.30 E-value=0.031 Score=29.49 Aligned_cols=115 Identities=16% Similarity=0.207 Sum_probs=66.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEECCEEEEECCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCH
Q ss_conf 09979999959998289999999739899988706770928999247878763489986149999988999999980937
Q 001580 68 PVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 147 (1050)
Q Consensus 68 ~~Ge~valvG~nGSGKSTLl~~L~G~~~~~~G~~~~~~~~Ig~v~Q~~~L~~~TV~enI~~g~~~~~~~~~~~~~~~~L~ 147 (1050)
.++-++.+.|+.||||||++.+++..++.....+..+-.+|-|. +...
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~-----~~~~--------------------------- 203 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFD-----IDGI--------------------------- 203 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSC-----CSSS---------------------------
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC-----CCCC---------------------------
T ss_conf 41054898767877744779998666257874699962674345-----6788---------------------------
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCC
Q ss_conf 89840999996312579987797899999999987029989999397888598999999999970015994899951591
Q 001580 148 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL 227 (1050)
Q Consensus 148 ~~i~~l~~g~~t~ig~~g~~LSGGQKqRiaLARAL~~~~~IllLDEpts~LD~~s~~~i~~~ll~~~~~~~T~IlvTH~l 227 (1050)
....+.. ..|+.---+|..+|=.+|||++..|.. |+++.+...+. ...|.-++-+-|-.
T Consensus 204 ---------~q~~v~~-----~~~~~~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~a----a~tGhlV~tTlHa~ 262 (401)
T d1p9ra_ 204 ---------GQTQVNP-----RVDMTFARGLRAILRQDPDVVMVGEIR---DLETAQIAVQA----SLTGHLVMSTLHTN 262 (401)
T ss_dssp ---------EEEECBG-----GGTBCHHHHHHHHGGGCCSEEEESCCC---SHHHHHHHHHH----HHTTCEEEEEECCS
T ss_pred ---------CEEEECC-----CCCCCHHHHHHHHHHHCCCEEEECCCC---CHHHHHHHHHH----HHCCCEEEEEECCC
T ss_conf ---------7026558-----767799999999984138889845768---75999999999----72498589983367
Q ss_pred CHHHHCCE
Q ss_conf 21421297
Q 001580 228 HFLSQVDR 235 (1050)
Q Consensus 228 ~~l~~aD~ 235 (1050)
+-+.-.+|
T Consensus 263 ~a~~~~~R 270 (401)
T d1p9ra_ 263 TAVGAVTR 270 (401)
T ss_dssp SSHHHHHH
T ss_pred CHHHHHHH
T ss_conf 66766543
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.27 E-value=0.0066 Score=34.49 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=24.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 999997999998899999840466886289
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIVELERGRI 724 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~~p~~G~i 724 (1050)
+++|+|++|||||||++.|...+....-++
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v 33 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRP 33 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 899991899989999999999999779768
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.26 E-value=0.0081 Score=33.85 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=17.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 996999997999998899999840466
Q 001580 692 PSDKVGIVGRTGAGKSSMLNTLFRIVE 718 (1050)
Q Consensus 692 ~Ge~~~ivG~~GaGKSTll~~l~g~~~ 718 (1050)
+|.++.|+||+|+||+||.+.|.-..+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.26 E-value=0.0017 Score=38.84 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=26.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 99799999599982899999997398999887
Q 001580 69 VGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 100 (1050)
Q Consensus 69 ~Ge~valvG~nGSGKSTLl~~L~G~~~~~~G~ 100 (1050)
+|...+++|++|.|||||+|.|.|......|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~ 127 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNE 127 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCC
T ss_conf 35649998778734878987515176764035
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.24 E-value=0.021 Score=30.74 Aligned_cols=31 Identities=23% Similarity=0.285 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 6999997999998899999840466886289998
Q 001580 694 DKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 727 (1050)
Q Consensus 694 e~~~ivG~~GaGKSTll~~l~g~~~p~~G~i~~~ 727 (1050)
+.+.|.|++||||||+.+.|.... .|.+.++
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~ 33 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNIN 33 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC---CCCEEEC
T ss_conf 799998999999999999999957---9979960
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.18 E-value=0.013 Score=32.36 Aligned_cols=46 Identities=7% Similarity=0.083 Sum_probs=29.8
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHH
Q ss_conf 998999939788859899999999997001599489995159121421
Q 001580 185 NSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ 232 (1050)
Q Consensus 185 ~~~IllLDEpts~LD~~s~~~i~~~ll~~~~~~~T~IlvTH~l~~l~~ 232 (1050)
...++++||+- .|.......+.. .+.........|++|++.+.+..
T Consensus 131 ~~~iiiide~d-~l~~~~~~~l~~-~~e~~~~~~~~Il~tn~~~~i~~ 176 (252)
T d1sxje2 131 RYKCVIINEAN-SLTKDAQAALRR-TMEKYSKNIRLIMVCDSMSPIIA 176 (252)
T ss_dssp CCEEEEEECTT-SSCHHHHHHHHH-HHHHSTTTEEEEEEESCSCSSCH
T ss_pred CCEEEEECCCC-CCCCCCCHHHHC-CCCCCCCCCCCEEEECCCCCHHH
T ss_conf 72499942433-345431112210-02213566430001021110025
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.14 E-value=0.011 Score=32.83 Aligned_cols=24 Identities=17% Similarity=0.459 Sum_probs=20.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 799999599982899999997398
Q 001580 71 SLVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 71 e~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
+++.+.|++||||||+++.|....
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~ 26 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN 26 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 799998999999999999999957
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=95.12 E-value=0.073 Score=26.71 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=19.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 996999997999998899999840466
Q 001580 692 PSDKVGIVGRTGAGKSSMLNTLFRIVE 718 (1050)
Q Consensus 692 ~Ge~~~ivG~~GaGKSTll~~l~g~~~ 718 (1050)
++.+++++||+|+||||.+-=|...+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 977999989999988999999999999
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.09 E-value=0.0083 Score=33.76 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=24.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 997999995999828999999973989
Q 001580 69 VGSLVAIVGGTGEGKTSLISAMLGELP 95 (1050)
Q Consensus 69 ~Ge~valvG~nGSGKSTLl~~L~G~~~ 95 (1050)
.|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 985999988999988999999999959
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.03 E-value=0.006 Score=34.80 Aligned_cols=32 Identities=38% Similarity=0.698 Sum_probs=26.4
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 60997999995999828999999973989998
Q 001580 67 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVS 98 (1050)
Q Consensus 67 i~~Ge~valvG~nGSGKSTLl~~L~G~~~~~~ 98 (1050)
+..+.-+.+.|+.||||||++++|+++.++..
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~ 194 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE 194 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred HHHCCCEEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 98378889994035662578999865301456
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.02 E-value=0.00039 Score=43.64 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=23.5
Q ss_pred CEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1000238963996999997999998899999840466
Q 001580 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 718 (1050)
Q Consensus 682 ~l~~isl~i~~Ge~~~ivG~~GaGKSTll~~l~g~~~ 718 (1050)
.+++.++.+.+| ++.|+|+|||||||++.+|.-.+.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L~ 49 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALI 49 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 870279974998-089988999987999999999966
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.00 E-value=0.078 Score=26.48 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=27.2
Q ss_pred CEEEEEE-EECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 1000238-96399699999799999889999984046
Q 001580 682 VLHGLSF-TIPPSDKVGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 682 ~l~~isl-~i~~Ge~~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
.|+.+=- -+++|..+-|.|+.|+|||++..-++-..
T Consensus 14 ~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~ 50 (242)
T d1tf7a2 14 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENA 50 (242)
T ss_dssp HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 7988456898698499999189999999999999999
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.00 E-value=0.016 Score=31.60 Aligned_cols=21 Identities=48% Similarity=0.860 Sum_probs=10.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999998899999840
Q 001580 695 KVGIVGRTGAGKSSMLNTLFR 715 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g 715 (1050)
+|||+|+.|+|||||++.|+|
T Consensus 10 kV~iiG~~~~GKSTLin~l~~ 30 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILN 30 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899999999999999999977
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.00 E-value=0.013 Score=32.19 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999997999998899999840466
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIVE 718 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~~ 718 (1050)
++||.|++||||||+.+.|..++.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 999968999987689999999973
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=94.97 E-value=0.01 Score=33.04 Aligned_cols=28 Identities=29% Similarity=0.470 Sum_probs=23.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3996999997999998899999840466
Q 001580 691 PPSDKVGIVGRTGAGKSSMLNTLFRIVE 718 (1050)
Q Consensus 691 ~~Ge~~~ivG~~GaGKSTll~~l~g~~~ 718 (1050)
|+|-.+.|.||.||||||+.+.|...+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.94 E-value=0.082 Score=26.36 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=17.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 96999997999998899999840466
Q 001580 693 SDKVGIVGRTGAGKSSMLNTLFRIVE 718 (1050)
Q Consensus 693 Ge~~~ivG~~GaGKSTll~~l~g~~~ 718 (1050)
..++.++||+|+||||.+-=|...+.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 86899989999988999999999999
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.92 E-value=0.0095 Score=33.33 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=12.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9979999959998289999999739
Q 001580 69 VGSLVAIVGGTGEGKTSLISAMLGE 93 (1050)
Q Consensus 69 ~Ge~valvG~nGSGKSTLl~~L~G~ 93 (1050)
+|.++.|+|.+||||||+.+.|+-.
T Consensus 5 ~g~~I~l~G~~GsGKTTia~~La~~ 29 (183)
T d1m8pa3 5 QGFTIFLTGYMNSGKDAIARALQVT 29 (183)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9769998899999999999999999
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=94.91 E-value=0.0093 Score=33.40 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=18.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399699999799999889999984046
Q 001580 691 PPSDKVGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 691 ~~Ge~~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
..+.++.|.|++||||||+.+.|...+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.87 E-value=0.0073 Score=34.19 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=23.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 799999599982899999997398999
Q 001580 71 SLVAIVGGTGEGKTSLISAMLGELPPV 97 (1050)
Q Consensus 71 e~valvG~nGSGKSTLl~~L~G~~~~~ 97 (1050)
.+++|+|.+|||||||+..|+.++...
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 099998099998999999999999867
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=94.87 E-value=0.012 Score=32.47 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=18.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399699999799999889999984046
Q 001580 691 PPSDKVGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 691 ~~Ge~~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
|+|-++.|+||.||||||..+.|.--+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.85 E-value=0.012 Score=32.48 Aligned_cols=27 Identities=41% Similarity=0.661 Sum_probs=24.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 997999995999828999999973989
Q 001580 69 VGSLVAIVGGTGEGKTSLISAMLGELP 95 (1050)
Q Consensus 69 ~Ge~valvG~nGSGKSTLl~~L~G~~~ 95 (1050)
.|.+++|+||+|+||+||++.|+-..+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.74 E-value=0.012 Score=32.56 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=24.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3996999997999998899999840466
Q 001580 691 PPSDKVGIVGRTGAGKSSMLNTLFRIVE 718 (1050)
Q Consensus 691 ~~Ge~~~ivG~~GaGKSTll~~l~g~~~ 718 (1050)
.+|-+|.|+|++||||||+.+.|..-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.71 E-value=0.092 Score=25.95 Aligned_cols=24 Identities=38% Similarity=0.583 Sum_probs=13.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 399699999799999889999984
Q 001580 691 PPSDKVGIVGRTGAGKSSMLNTLF 714 (1050)
Q Consensus 691 ~~Ge~~~ivG~~GaGKSTll~~l~ 714 (1050)
++.+.+-++|+.||||||+.+-+.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 999899998999998999999999
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=94.66 E-value=0.014 Score=32.12 Aligned_cols=28 Identities=39% Similarity=0.601 Sum_probs=25.3
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0997999995999828999999973989
Q 001580 68 PVGSLVAIVGGTGEGKTSLISAMLGELP 95 (1050)
Q Consensus 68 ~~Ge~valvG~nGSGKSTLl~~L~G~~~ 95 (1050)
|+|-.++|.|++||||||+.+.|+-.+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.57 E-value=0.012 Score=32.51 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=16.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999997999998899999840466
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIVE 718 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~~ 718 (1050)
+|||.|++||||||+.+.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789887899999999999836
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.55 E-value=0.013 Score=32.30 Aligned_cols=23 Identities=30% Similarity=0.653 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599982899999997398
Q 001580 72 LVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
.++|+|.+|+|||||+|.|+|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.50 E-value=0.012 Score=32.57 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999959998289999999739899
Q 001580 72 LVAIVGGTGEGKTSLISAMLGELPP 96 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~~~ 96 (1050)
+++|.|++||||||+.+.|.-.+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997898878999999999998363
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=94.43 E-value=0.012 Score=32.69 Aligned_cols=23 Identities=35% Similarity=0.668 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799999889999984046
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
+++|+|+.|+|||||++.|+|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=94.39 E-value=0.11 Score=25.44 Aligned_cols=27 Identities=22% Similarity=0.285 Sum_probs=18.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 996999997999998899999840466
Q 001580 692 PSDKVGIVGRTGAGKSSMLNTLFRIVE 718 (1050)
Q Consensus 692 ~Ge~~~ivG~~GaGKSTll~~l~g~~~ 718 (1050)
...++.++||+|+||||.+-=|...+.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998999989999998999999999999
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.36 E-value=0.013 Score=32.22 Aligned_cols=24 Identities=33% Similarity=0.571 Sum_probs=16.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699999799999889999984046
Q 001580 694 DKVGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 694 e~~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
.+|+|.|+.|+|||||.+.|...+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=94.35 E-value=0.015 Score=31.78 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=20.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 96999997999998899999840466
Q 001580 693 SDKVGIVGRTGAGKSSMLNTLFRIVE 718 (1050)
Q Consensus 693 Ge~~~ivG~~GaGKSTll~~l~g~~~ 718 (1050)
..+|.|.|++||||||+.+.|...+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=94.34 E-value=0.016 Score=31.70 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799999889999984046
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
+++|+|+.|||||||++.|+...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89999189983999999999988
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.27 E-value=0.016 Score=31.62 Aligned_cols=24 Identities=29% Similarity=0.580 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999997999998899999840466
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIVE 718 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~~ 718 (1050)
++||.|++||||||+.+.|.-.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999989997879999999999964
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=94.27 E-value=0.065 Score=27.11 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=13.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599982899999997398
Q 001580 73 VAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 73 valvG~nGSGKSTLl~~L~G~~ 94 (1050)
+.|.|++|||||.|+++++.+.
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~ 60 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEA 60 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 7998889983999999999874
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.25 E-value=0.023 Score=30.44 Aligned_cols=24 Identities=42% Similarity=0.573 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999828999999973989
Q 001580 72 LVAIVGGTGEGKTSLISAMLGELP 95 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~~ 95 (1050)
.++|+|.+|+|||||+|+|.|.-.
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 799989999978999999958886
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.18 E-value=0.0096 Score=33.28 Aligned_cols=26 Identities=35% Similarity=0.406 Sum_probs=14.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99799999599982899999997398
Q 001580 69 VGSLVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 69 ~Ge~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
+|.++.|+|.+||||||+.+.|+-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99699988999999999999999999
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.17 E-value=0.021 Score=30.81 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=21.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 699999799999889999984046688628
Q 001580 694 DKVGIVGRTGAGKSSMLNTLFRIVELERGR 723 (1050)
Q Consensus 694 e~~~ivG~~GaGKSTll~~l~g~~~p~~G~ 723 (1050)
.+++|.|+.||||||+.+.|...+......
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~ 31 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVN 31 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 889998999989899999999999876998
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=94.16 E-value=0.019 Score=31.13 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=24.3
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099799999599982899999997398
Q 001580 68 PVGSLVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 68 ~~Ge~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
..+.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=94.15 E-value=0.024 Score=30.39 Aligned_cols=23 Identities=39% Similarity=0.562 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599982899999997398
Q 001580 72 LVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
+++++|+.|||||||++.|+...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89999189983999999999988
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.13 E-value=0.012 Score=32.46 Aligned_cols=42 Identities=14% Similarity=0.308 Sum_probs=32.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEECCEEEEECCCCCC
Q ss_conf 99999599982899999997398999887067709289992478787
Q 001580 72 LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIF 118 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~~~~~G~~~~~~~~Ig~v~Q~~~L~ 118 (1050)
+++|.|++||||||+.+.|...+....++ ..+..++++.++.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~~-----~~v~~Is~D~F~~ 123 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPEH-----RRVELITTDGFLH 123 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTC-----CCEEEEEGGGGBC
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCC-----CCEEEEEEEEEEC
T ss_conf 99996899998768999999997304689-----9659995215689
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.10 E-value=0.019 Score=31.11 Aligned_cols=45 Identities=24% Similarity=0.327 Sum_probs=31.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEECCEEEEECCCCCC
Q ss_conf 99999599982899999997398999887067709289992478787
Q 001580 72 LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIF 118 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~~~~~G~~~~~~~~Ig~v~Q~~~L~ 118 (1050)
++||.|++||||||+.+.|.-.+.... .......+.+++++.+..
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~--~~~~~~~~~vi~~D~yy~ 48 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNE--VDYRQKQVVILSQDSFYR 48 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGG--SCGGGCSEEEEEGGGGBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHC--CCCCCCCEEEEECCCCCC
T ss_conf 999989997879999999999964101--345788439993465322
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.07 E-value=0.019 Score=31.08 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=18.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99699999799999889999984046
Q 001580 692 PSDKVGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 692 ~Ge~~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
+..++.|+||.||||||+.+.|.--+
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99489998999998899999999997
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=94.06 E-value=0.023 Score=30.52 Aligned_cols=27 Identities=22% Similarity=0.602 Sum_probs=23.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 997999995999828999999973989
Q 001580 69 VGSLVAIVGGTGEGKTSLISAMLGELP 95 (1050)
Q Consensus 69 ~Ge~valvG~nGSGKSTLl~~L~G~~~ 95 (1050)
...++.|.|++||||||+.+.|+..+.
T Consensus 2 ~~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 985999989999998999999999728
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.02 E-value=0.024 Score=30.31 Aligned_cols=29 Identities=48% Similarity=0.673 Sum_probs=23.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 99999799999889999984046688628
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIVELERGR 723 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~~p~~G~ 723 (1050)
.|+|+|++|+|||||++.|.|.-.-..|.
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~~ 86 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEGA 86 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 79998999997899999995888677756
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.98 E-value=0.13 Score=24.87 Aligned_cols=30 Identities=23% Similarity=0.385 Sum_probs=24.7
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 963996999997999998899999840466
Q 001580 689 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 718 (1050)
Q Consensus 689 ~i~~Ge~~~ivG~~GaGKSTll~~l~g~~~ 718 (1050)
.+++..-+-+.||.|+|||++++.+.+.+.
T Consensus 37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 999887578878998763047788787718
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.95 E-value=0.022 Score=30.54 Aligned_cols=22 Identities=45% Similarity=0.773 Sum_probs=15.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998289999999739
Q 001580 72 LVAIVGGTGEGKTSLISAMLGE 93 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~ 93 (1050)
+++|+|++|+|||||++.|+|.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999999999999688
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.94 E-value=0.011 Score=32.78 Aligned_cols=29 Identities=31% Similarity=0.319 Sum_probs=24.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 79999959998289999999739899988
Q 001580 71 SLVAIVGGTGEGKTSLISAMLGELPPVSD 99 (1050)
Q Consensus 71 e~valvG~nGSGKSTLl~~L~G~~~~~~G 99 (1050)
..+.|.|++|+|||||++.++..+.....
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~ 30 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGV 30 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 69999889997199999999999997799
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.88 E-value=0.022 Score=30.63 Aligned_cols=24 Identities=42% Similarity=0.555 Sum_probs=21.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 799999599982899999997398
Q 001580 71 SLVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 71 e~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
=.+|++|+.|+|||||++.|+|.-
T Consensus 9 ~kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 9 IKVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 889999999999999999997787
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=93.80 E-value=0.018 Score=31.18 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=19.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999997999998899999840466
Q 001580 694 DKVGIVGRTGAGKSSMLNTLFRIVE 718 (1050)
Q Consensus 694 e~~~ivG~~GaGKSTll~~l~g~~~ 718 (1050)
..+.|.||.||||||+.+.|...+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.79 E-value=0.021 Score=30.71 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=23.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 9799999599982899999997398999
Q 001580 70 GSLVAIVGGTGEGKTSLISAMLGELPPV 97 (1050)
Q Consensus 70 Ge~valvG~nGSGKSTLl~~L~G~~~~~ 97 (1050)
..+++|.|++||||||+++.|+-.+...
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~ 28 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKE 28 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 9889998999989899999999999876
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=93.78 E-value=0.016 Score=31.57 Aligned_cols=24 Identities=33% Similarity=0.614 Sum_probs=21.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 799999599982899999997398
Q 001580 71 SLVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 71 e~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
..++|.|+.|||||||++.|+-.+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.78 E-value=0.016 Score=31.72 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=12.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9799999599982899999997398
Q 001580 70 GSLVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 70 Ge~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
.-+++|.|+.|+|||||++.+...+
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~ 78 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLL 78 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 3289743899998999999999999
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.75 E-value=0.02 Score=30.93 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=13.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979999988999998404
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRI 716 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~ 716 (1050)
.|+|+|++|+|||||++.|+|.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998899999999689
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=93.73 E-value=0.022 Score=30.63 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799999889999984046
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
++.|+||.||||||+.+.|.-.+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.70 E-value=0.021 Score=30.69 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799999889999984046
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
.++|+|++|+|||||++.|+|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=93.69 E-value=0.00088 Score=41.04 Aligned_cols=35 Identities=23% Similarity=0.491 Sum_probs=29.2
Q ss_pred CEEECEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 311000886099799999599982899999997398
Q 001580 59 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 59 ~L~~isL~i~~Ge~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
.+++.++++.+| +++|+|+|||||||++.+|.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 870279974998-08998899998799999999996
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.63 E-value=0.027 Score=29.90 Aligned_cols=20 Identities=35% Similarity=0.594 Sum_probs=9.8
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99995999828999999973
Q 001580 73 VAIVGGTGEGKTSLISAMLG 92 (1050)
Q Consensus 73 valvG~nGSGKSTLl~~L~G 92 (1050)
++++|+.|+|||||++.|+|
T Consensus 3 V~liG~~n~GKSsLi~~L~~ 22 (171)
T d1mkya1 3 VLIVGRPNVGKSTLFNKLVK 22 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999989999999967
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.59 E-value=0.024 Score=30.27 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=13.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 69999979999988999998404
Q 001580 694 DKVGIVGRTGAGKSSMLNTLFRI 716 (1050)
Q Consensus 694 e~~~ivG~~GaGKSTll~~l~g~ 716 (1050)
..+.|+||||+||+||++.|...
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
T ss_conf 71999998999999999999970
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.50 E-value=0.023 Score=30.43 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=17.4
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 6399699999799999889999984046
Q 001580 690 IPPSDKVGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 690 i~~Ge~~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
+..+.++.|+||.||||||+.+.|..-+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 4678289998999998799999999986
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.50 E-value=0.03 Score=29.58 Aligned_cols=20 Identities=45% Similarity=0.843 Sum_probs=10.7
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99995999828999999973
Q 001580 73 VAIVGGTGEGKTSLISAMLG 92 (1050)
Q Consensus 73 valvG~nGSGKSTLl~~L~G 92 (1050)
++++|.+++|||||++.|.|
T Consensus 8 I~iiG~~nvGKSSLin~L~~ 27 (179)
T d1egaa1 8 IAIVGRPNVGKSTLLNKLLG 27 (179)
T ss_dssp EEEECSSSSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99997999989999999958
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.48 E-value=0.04 Score=28.65 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=12.0
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 6399699999799999889999984
Q 001580 690 IPPSDKVGIVGRTGAGKSSMLNTLF 714 (1050)
Q Consensus 690 i~~Ge~~~ivG~~GaGKSTll~~l~ 714 (1050)
+++|+.+-|.||+|+||||+..-++
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la 44 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLA 44 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 8599799999589999999999999
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.40 E-value=0.029 Score=29.73 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=10.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999828999999973
Q 001580 72 LVAIVGGTGEGKTSLISAMLG 92 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G 92 (1050)
.++|+|+.|+|||||++.|.|
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~ 25 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTT 25 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999889999999967
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=93.40 E-value=0.027 Score=29.88 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=14.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799999889999984046
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
.+.|+||+||||||+.+.|.-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998999999999999999996
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.34 E-value=0.021 Score=30.77 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 996999997999998899999840466886289998
Q 001580 692 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 727 (1050)
Q Consensus 692 ~Ge~~~ivG~~GaGKSTll~~l~g~~~p~~G~i~~~ 727 (1050)
+-.++.|+||.||||||+.+.|..-+ |-+.++
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~----g~~~is 38 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLS 38 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS----SCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEE
T ss_conf 97289998999999899999999985----990885
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=93.31 E-value=0.02 Score=30.93 Aligned_cols=20 Identities=40% Similarity=0.670 Sum_probs=11.3
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99997999998899999840
Q 001580 696 VGIVGRTGAGKSSMLNTLFR 715 (1050)
Q Consensus 696 ~~ivG~~GaGKSTll~~l~g 715 (1050)
|||+|+.++|||||++.|+|
T Consensus 4 VaiiG~~nvGKSSLin~L~~ 23 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSS 23 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEE
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99989999879999999968
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=93.29 E-value=0.037 Score=28.89 Aligned_cols=28 Identities=36% Similarity=0.513 Sum_probs=23.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0997999995999828999999973989
Q 001580 68 PVGSLVAIVGGTGEGKTSLISAMLGELP 95 (1050)
Q Consensus 68 ~~Ge~valvG~nGSGKSTLl~~L~G~~~ 95 (1050)
+++.+++++|++|+||||++--|+-.+.
T Consensus 4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9977999989999988999999999999
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.27 E-value=0.024 Score=30.38 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99997999998899999840466
Q 001580 696 VGIVGRTGAGKSSMLNTLFRIVE 718 (1050)
Q Consensus 696 ~~ivG~~GaGKSTll~~l~g~~~ 718 (1050)
+.|+||+||||+||.+.|....+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999998999999997488
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.24 E-value=0.033 Score=29.30 Aligned_cols=23 Identities=43% Similarity=0.632 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799999889999984046
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
.|+++|+.|+|||||++.|+|.-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999998999999996777
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=93.19 E-value=0.026 Score=30.08 Aligned_cols=32 Identities=28% Similarity=0.463 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9999979999988999998404668862899989
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 728 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~~p~~G~i~~~g 728 (1050)
.+-+.||.|+||||+.+.|.+.+.. +-+.+++
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~ 65 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN 65 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHC--CEEEEEC
T ss_conf 9998897998899999999998651--5489832
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.14 E-value=0.039 Score=28.73 Aligned_cols=27 Identities=33% Similarity=0.442 Sum_probs=14.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 996999997999998899999840466
Q 001580 692 PSDKVGIVGRTGAGKSSMLNTLFRIVE 718 (1050)
Q Consensus 692 ~Ge~~~ivG~~GaGKSTll~~l~g~~~ 718 (1050)
+|..++|-|+-||||||+++.|...+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 987899989988879999999999999
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.13 E-value=0.036 Score=29.05 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=13.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599982899999997398
Q 001580 72 LVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
+++++|.+||||||+.+.|+..+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999999999999999999
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=93.13 E-value=0.033 Score=29.28 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=22.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7999995999828999999973989
Q 001580 71 SLVAIVGGTGEGKTSLISAMLGELP 95 (1050)
Q Consensus 71 e~valvG~nGSGKSTLl~~L~G~~~ 95 (1050)
.++.|.|++||||||+.+.|+..++
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=93.13 E-value=0.18 Score=23.87 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=13.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799999889999984046
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
-+-+.||.|+|||++++.+...+
T Consensus 47 ~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 47 GVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHC
T ss_conf 67866899888228999999982
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.08 E-value=0.031 Score=29.51 Aligned_cols=25 Identities=32% Similarity=0.694 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999959998289999999739899
Q 001580 72 LVAIVGGTGEGKTSLISAMLGELPP 96 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~~~ 96 (1050)
.++|+||+||||+|+++.|+-..+.
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~~ 27 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 6999899999989999999974886
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.05 E-value=0.039 Score=28.73 Aligned_cols=26 Identities=15% Similarity=0.492 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 97999995999828999999973989
Q 001580 70 GSLVAIVGGTGEGKTSLISAMLGELP 95 (1050)
Q Consensus 70 Ge~valvG~nGSGKSTLl~~L~G~~~ 95 (1050)
...++|+||+|+||+|+++.|+...+
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 77199999899999999999997097
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.03 E-value=0.04 Score=28.68 Aligned_cols=26 Identities=35% Similarity=0.470 Sum_probs=22.4
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 60997999995999828999999973
Q 001580 67 IPVGSLVAIVGGTGEGKTSLISAMLG 92 (1050)
Q Consensus 67 i~~Ge~valvG~nGSGKSTLl~~L~G 92 (1050)
-++-+++.++|.+||||||+.+.++-
T Consensus 11 ~~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 11 SPNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp CSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 99998999989999989999999997
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.98 E-value=0.03 Score=29.65 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999828999999973989
Q 001580 72 LVAIVGGTGEGKTSLISAMLGELP 95 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~~ 95 (1050)
.++|+|++|+|||||++.|.|.-.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~ 25 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKV 25 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999889999999968985
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=92.92 E-value=0.038 Score=28.80 Aligned_cols=23 Identities=43% Similarity=0.709 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799999889999984046
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
+|+|+|+.|+|||||++.|+|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.90 E-value=0.036 Score=29.00 Aligned_cols=22 Identities=45% Similarity=0.714 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999799999889999984046
Q 001580 696 VGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 696 ~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
+.|+||+||||+|+.+.|....
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999999999999999999748
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=92.87 E-value=0.021 Score=30.74 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599982899999997398
Q 001580 72 LVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
-+||+|++++|||||++.|.|.-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69998999987999999996899
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.83 E-value=0.046 Score=28.23 Aligned_cols=29 Identities=21% Similarity=0.174 Sum_probs=19.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39969999979999988999998404668
Q 001580 691 PPSDKVGIVGRTGAGKSSMLNTLFRIVEL 719 (1050)
Q Consensus 691 ~~Ge~~~ivG~~GaGKSTll~~l~g~~~p 719 (1050)
++|-.++|-|+-||||||+++.|...+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98059999899888999999999999987
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.83 E-value=0.017 Score=31.36 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=23.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 996999997999998899999840466
Q 001580 692 PSDKVGIVGRTGAGKSSMLNTLFRIVE 718 (1050)
Q Consensus 692 ~Ge~~~ivG~~GaGKSTll~~l~g~~~ 718 (1050)
+|-++.|+|++||||||+.+.|...+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=92.82 E-value=0.051 Score=27.91 Aligned_cols=27 Identities=22% Similarity=0.458 Sum_probs=24.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099799999599982899999997398
Q 001580 68 PVGSLVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 68 ~~Ge~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
|+|-.++|+|+.||||||..+.|+-.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=92.81 E-value=0.036 Score=28.99 Aligned_cols=24 Identities=54% Similarity=0.594 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 969999979999988999998404
Q 001580 693 SDKVGIVGRTGAGKSSMLNTLFRI 716 (1050)
Q Consensus 693 Ge~~~ivG~~GaGKSTll~~l~g~ 716 (1050)
|=+++++|+.++|||||++.|+|.
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999899999899999999688
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.81 E-value=0.04 Score=28.68 Aligned_cols=22 Identities=45% Similarity=0.711 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979999988999998404
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRI 716 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~ 716 (1050)
.|+|+|.+++|||||++.|+|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.76 E-value=0.03 Score=29.64 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=21.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0997999995999828999999973989
Q 001580 68 PVGSLVAIVGGTGEGKTSLISAMLGELP 95 (1050)
Q Consensus 68 ~~Ge~valvG~nGSGKSTLl~~L~G~~~ 95 (1050)
++.-.++|+|.+|+|||||++.+.+...
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7777899999999898999999967887
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=92.73 E-value=0.024 Score=30.26 Aligned_cols=21 Identities=43% Similarity=0.620 Sum_probs=10.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959998289999999739
Q 001580 73 VAIVGGTGEGKTSLISAMLGE 93 (1050)
Q Consensus 73 valvG~nGSGKSTLl~~L~G~ 93 (1050)
+||+|..++|||||++.|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.72 E-value=0.044 Score=28.34 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=17.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799999889999984046
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
++.|+||.||||||..+.|.--+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=92.67 E-value=0.037 Score=28.93 Aligned_cols=45 Identities=18% Similarity=0.204 Sum_probs=29.6
Q ss_pred CEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEECCEEEEECC
Q ss_conf 0088609979999959998289999999739899988706770928999247
Q 001580 63 INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQV 114 (1050)
Q Consensus 63 isL~i~~Ge~valvG~nGSGKSTLl~~L~G~~~~~~G~~~~~~~~Ig~v~Q~ 114 (1050)
+++.-.+-.+++++|++|+||||++--|+-.+. ..| ..|+++.=+
T Consensus 4 l~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~-~~~------~kV~lit~D 48 (213)
T d1vmaa2 4 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV-DEG------KSVVLAAAD 48 (213)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH-HTT------CCEEEEEEC
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH-HCC------CCEEEEEEC
T ss_conf 767999998999989999988999999999999-779------906999601
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.65 E-value=0.042 Score=28.51 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979999988999998404
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRI 716 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~ 716 (1050)
.|+|+|+.|+|||||++.|.+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998899999999679
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=92.56 E-value=0.026 Score=30.09 Aligned_cols=22 Identities=50% Similarity=0.723 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999799999889999984046
Q 001580 696 VGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 696 ~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
|||+|+.++|||||++.|+|.-
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=92.55 E-value=0.035 Score=29.08 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599982899999997398
Q 001580 72 LVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
.++|+|++||||||+.+.|+-.+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=92.53 E-value=0.043 Score=28.41 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599982899999997398
Q 001580 72 LVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
.+.|+|++||||||+.+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998999999999999999996
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.49 E-value=0.043 Score=28.42 Aligned_cols=24 Identities=29% Similarity=0.574 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999828999999973989
Q 001580 72 LVAIVGGTGEGKTSLISAMLGELP 95 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~~ 95 (1050)
.++|+||+||||+|+++.|+-..+
T Consensus 2 pIvl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 199999999999999999997488
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=92.43 E-value=0.046 Score=28.22 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599982899999997398
Q 001580 72 LVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
.++++|.+|+|||||++.+.+.-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996798
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=92.41 E-value=0.036 Score=29.05 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=14.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799999889999984046
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
++.|.||.||||||+.+.|.--+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.39 E-value=0.048 Score=28.06 Aligned_cols=27 Identities=22% Similarity=0.522 Sum_probs=23.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099799999599982899999997398
Q 001580 68 PVGSLVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 68 ~~Ge~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
.+..+++|+|+.||||||+.+.|+-.+
T Consensus 4 ~kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 4 SKPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 899489998999998899999999997
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.38 E-value=0.056 Score=27.56 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=18.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 996999997999998899999840466
Q 001580 692 PSDKVGIVGRTGAGKSSMLNTLFRIVE 718 (1050)
Q Consensus 692 ~Ge~~~ivG~~GaGKSTll~~l~g~~~ 718 (1050)
+|..++|-|+-||||||++++|.-.+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 768999989988869999999999997
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=92.38 E-value=0.047 Score=28.13 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599982899999997398
Q 001580 72 LVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
.++++|+.|+|||||++.+.+.-
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999996598
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.38 E-value=0.051 Score=27.89 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=15.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799999889999984046
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
++.|+||.||||||+.+.|.-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=92.36 E-value=0.046 Score=28.21 Aligned_cols=34 Identities=26% Similarity=0.476 Sum_probs=25.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 9699999799999889999984046688628999
Q 001580 693 SDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 726 (1050)
Q Consensus 693 Ge~~~ivG~~GaGKSTll~~l~g~~~p~~G~i~~ 726 (1050)
.-++||.|+.|||||||+..|.+.+....-+|-+
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vav 87 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV 87 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 3289743899998999999999999756983322
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.34 E-value=0.028 Score=29.82 Aligned_cols=26 Identities=38% Similarity=0.583 Sum_probs=17.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 96999997999998899999840466
Q 001580 693 SDKVGIVGRTGAGKSSMLNTLFRIVE 718 (1050)
Q Consensus 693 Ge~~~ivG~~GaGKSTll~~l~g~~~ 718 (1050)
+..++|-|+-||||||++++|...+.
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 98899987888779999999999973
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=92.34 E-value=0.046 Score=28.22 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999998899999840
Q 001580 695 KVGIVGRTGAGKSSMLNTLFR 715 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g 715 (1050)
++||.|+.||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989887789999999998
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=92.33 E-value=0.052 Score=27.82 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799999889999984046
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
++.|+||-||||||+.+.|.--+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=92.31 E-value=0.049 Score=28.03 Aligned_cols=21 Identities=33% Similarity=0.716 Sum_probs=10.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999828999999973
Q 001580 72 LVAIVGGTGEGKTSLISAMLG 92 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G 92 (1050)
++||+|+..+|||||++.|++
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~ 27 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRG 27 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHH
T ss_conf 799996998549999999982
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.31 E-value=0.052 Score=27.83 Aligned_cols=27 Identities=26% Similarity=0.534 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC-CCC
Q ss_conf 999995999828999999973989-998
Q 001580 72 LVAIVGGTGEGKTSLISAMLGELP-PVS 98 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~~-~~~ 98 (1050)
.++++|.-.||||||+++|+|.-- |++
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~lP~~ 53 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDFLPRG 53 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCCCCC-
T ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCC
T ss_conf 5999818989799999999689978878
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=92.27 E-value=0.037 Score=28.91 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=15.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799999889999984046
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
+|+|-|+.||||||+++.|...+
T Consensus 11 ~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 11 TVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99988999988899999999870
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.25 E-value=0.035 Score=29.14 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 996999997999998899999840466
Q 001580 692 PSDKVGIVGRTGAGKSSMLNTLFRIVE 718 (1050)
Q Consensus 692 ~Ge~~~ivG~~GaGKSTll~~l~g~~~ 718 (1050)
+.-++.|+|+.|+|||||++.+.+-..
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 777899999999898999999967887
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=92.22 E-value=0.074 Score=26.65 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999828999999973989
Q 001580 72 LVAIVGGTGEGKTSLISAMLGELP 95 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~~ 95 (1050)
.++++|..|+|||||++.+.|...
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999999999899999999808998
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=92.15 E-value=0.048 Score=28.06 Aligned_cols=21 Identities=24% Similarity=0.608 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999828999999973
Q 001580 72 LVAIVGGTGEGKTSLISAMLG 92 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G 92 (1050)
+++|.|..||||||+++.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989887789999999998
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=92.11 E-value=0.054 Score=27.70 Aligned_cols=20 Identities=35% Similarity=0.664 Sum_probs=16.9
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999799999889999984
Q 001580 695 KVGIVGRTGAGKSSMLNTLF 714 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~ 714 (1050)
++||.|..||||||+.+.+.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=92.11 E-value=0.048 Score=28.07 Aligned_cols=31 Identities=23% Similarity=0.362 Sum_probs=23.8
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 8860997999995999828999999973989
Q 001580 65 LDIPVGSLVAIVGGTGEGKTSLISAMLGELP 95 (1050)
Q Consensus 65 L~i~~Ge~valvG~nGSGKSTLl~~L~G~~~ 95 (1050)
++-++-.+++++|++|+||||++--|+-.+.
T Consensus 4 ~~~~~p~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 4 VEGKAPFVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp CCSCTTEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7899997999989999998999999999999
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.09 E-value=0.053 Score=27.73 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599982899999997398
Q 001580 72 LVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
+++++|++|+|||||++.+.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=92.09 E-value=0.048 Score=28.08 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=16.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799999889999984046
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
.+-++|+.||||||+.+.|.-.+
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 88998899998899999999994
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.99 E-value=0.068 Score=26.95 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=13.0
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 6099799999599982899999997
Q 001580 67 IPVGSLVAIVGGTGEGKTSLISAML 91 (1050)
Q Consensus 67 i~~Ge~valvG~nGSGKSTLl~~L~ 91 (1050)
+++|+++.|.|++||||||++.-++
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 8699699998389998899999999
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.98 E-value=0.057 Score=27.52 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799999889999984046
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
+++++|+.|+|||||++.+.+-.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=91.97 E-value=0.064 Score=27.12 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=13.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3996999997999998899999840
Q 001580 691 PPSDKVGIVGRTGAGKSSMLNTLFR 715 (1050)
Q Consensus 691 ~~Ge~~~ivG~~GaGKSTll~~l~g 715 (1050)
.+|-++.+.|.+||||||+.+.|..
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9986999989999998999999998
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=91.93 E-value=0.051 Score=27.88 Aligned_cols=27 Identities=26% Similarity=0.236 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 997999995999828999999973989
Q 001580 69 VGSLVAIVGGTGEGKTSLISAMLGELP 95 (1050)
Q Consensus 69 ~Ge~valvG~nGSGKSTLl~~L~G~~~ 95 (1050)
+.-+++|-|..||||||+++.|...++
T Consensus 8 kp~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 8 QPFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 861999889999888999999998707
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.88 E-value=0.044 Score=28.36 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=24.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 997999995999828999999973989
Q 001580 69 VGSLVAIVGGTGEGKTSLISAMLGELP 95 (1050)
Q Consensus 69 ~Ge~valvG~nGSGKSTLl~~L~G~~~ 95 (1050)
++.+++|-|+.||||||+++.|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=91.85 E-value=0.064 Score=27.16 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799999889999984046
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
+++|-||.||||||..++|..-+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99978999879899999999996
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.80 E-value=0.083 Score=26.31 Aligned_cols=29 Identities=24% Similarity=0.365 Sum_probs=25.7
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 86099799999599982899999997398
Q 001580 66 DIPVGSLVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 66 ~i~~Ge~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
-+++|+++.|.|++|||||||+.-++...
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 98599799999589999999999999999
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=91.79 E-value=0.062 Score=27.25 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=19.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99799999599982899999997398
Q 001580 69 VGSLVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 69 ~Ge~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
+.=.++++|..|||||||++.+.+.-
T Consensus 14 k~~kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 14 QEHKVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 85799999999989899999996688
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=91.78 E-value=0.057 Score=27.51 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=10.3
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99995999828999999973
Q 001580 73 VAIVGGTGEGKTSLISAMLG 92 (1050)
Q Consensus 73 valvG~nGSGKSTLl~~L~G 92 (1050)
+||+|+..+|||||++.|+|
T Consensus 8 IaiiG~~naGKSTL~n~L~~ 27 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTE 27 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99990778709999999997
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=91.76 E-value=0.061 Score=27.31 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999799999889999984046
Q 001580 696 VGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 696 ~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
+.|+|+.||||||+.+.|...+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=91.76 E-value=0.068 Score=26.95 Aligned_cols=30 Identities=23% Similarity=0.312 Sum_probs=25.4
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 886099799999599982899999997398
Q 001580 65 LDIPVGSLVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 65 L~i~~Ge~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
+.-++|.++-+.|.+||||||+.+.|.-.+
T Consensus 19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 19 LRNQRGLTIWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 858998699998999999899999999887
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.73 E-value=0.067 Score=27.01 Aligned_cols=27 Identities=22% Similarity=0.465 Sum_probs=23.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099799999599982899999997398
Q 001580 68 PVGSLVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 68 ~~Ge~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
++-.+++|+|+.||||||+.+.|+-.+
T Consensus 6 ~~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 6 DQVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997289998999999899999999985
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=91.69 E-value=0.091 Score=26.01 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999997999998899999840466
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIVE 718 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~~ 718 (1050)
++.++|+.|+|||||++.+.+...
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999999999899999999808998
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=91.63 E-value=0.071 Score=26.79 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=12.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979999988999998404
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRI 716 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~ 716 (1050)
+++|.||.||||+|+.+.|..-
T Consensus 5 iI~I~GppGSGKgT~ak~La~~ 26 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEA 26 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8997799988989999999999
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=91.58 E-value=0.067 Score=26.99 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799999889999984046
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
+++|+|..|+|||||++.+.+--
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996798
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.56 E-value=0.076 Score=26.60 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=25.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 099799999599982899999997398999
Q 001580 68 PVGSLVAIVGGTGEGKTSLISAMLGELPPV 97 (1050)
Q Consensus 68 ~~Ge~valvG~nGSGKSTLl~~L~G~~~~~ 97 (1050)
++|-++++-|+.||||||+++.|...+...
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~~ 30 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCAA 30 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 980599998998889999999999999877
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.53 E-value=0.065 Score=27.07 Aligned_cols=23 Identities=35% Similarity=0.702 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599982899999997398
Q 001580 72 LVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
.++++|.-.||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=91.52 E-value=0.063 Score=27.17 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=15.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999997999998899999840466
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIVE 718 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~~ 718 (1050)
++.|.|+.||||||+.+.|...+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989899898999999999998
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=91.52 E-value=0.07 Score=26.86 Aligned_cols=20 Identities=35% Similarity=0.745 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999599982899999997
Q 001580 72 LVAIVGGTGEGKTSLISAML 91 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~ 91 (1050)
++||.|..||||||+++.+.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.48 E-value=0.08 Score=26.42 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=11.1
Q ss_pred ECCCCEEEEECCCCCCHHHHHH
Q ss_conf 6399699999799999889999
Q 001580 690 IPPSDKVGIVGRTGAGKSSMLN 711 (1050)
Q Consensus 690 i~~Ge~~~ivG~~GaGKSTll~ 711 (1050)
+++|+.+-|.|+.|+||||+..
T Consensus 33 lp~G~~~li~G~pGsGKT~~~l 54 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAH 54 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHH
T ss_conf 5588799998589898899999
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=91.46 E-value=0.072 Score=26.78 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999998899999840
Q 001580 695 KVGIVGRTGAGKSSMLNTLFR 715 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g 715 (1050)
++||+|..||||||..+.+..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789886889999999998
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=91.41 E-value=0.076 Score=26.59 Aligned_cols=27 Identities=26% Similarity=0.219 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 997999995999828999999973989
Q 001580 69 VGSLVAIVGGTGEGKTSLISAMLGELP 95 (1050)
Q Consensus 69 ~Ge~valvG~nGSGKSTLl~~L~G~~~ 95 (1050)
+..+++++|++|+||||++--|+-.+.
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 986899989999988999999999999
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=91.36 E-value=0.071 Score=26.79 Aligned_cols=23 Identities=17% Similarity=0.301 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799999889999984046
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
++.|+||.||||||..+.|.--+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998799999899999999986
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=91.31 E-value=0.034 Score=29.20 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=11.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998289999999739
Q 001580 72 LVAIVGGTGEGKTSLISAMLGE 93 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~ 93 (1050)
.++|+|.+++|||||++.|.|.
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~ 39 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQ 39 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999889999899999998589
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=91.31 E-value=0.034 Score=29.17 Aligned_cols=26 Identities=46% Similarity=0.525 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 96999997999998899999840466
Q 001580 693 SDKVGIVGRTGAGKSSMLNTLFRIVE 718 (1050)
Q Consensus 693 Ge~~~ivG~~GaGKSTll~~l~g~~~ 718 (1050)
.-+|+|+|+.++|||||++.|++.-.
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~~ 41 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQKS 41 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 97899988999989999999858985
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=91.27 E-value=0.075 Score=26.62 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799999889999984046
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
++.++|+.|+|||||++.+.+--
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999996598
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=91.25 E-value=0.072 Score=26.78 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799999889999984046
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
.+||+|+..||||||++.|++..
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.24 E-value=0.083 Score=26.32 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=9.7
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999799999889999984
Q 001580 695 KVGIVGRTGAGKSSMLNTLF 714 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~ 714 (1050)
++||.|+.|||||||...|.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99837998788999999999
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.23 E-value=0.083 Score=26.30 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799999889999984046
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
++.|+||.||||||+.+.|.--+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=91.21 E-value=0.079 Score=26.45 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=21.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7999995999828999999973989
Q 001580 71 SLVAIVGGTGEGKTSLISAMLGELP 95 (1050)
Q Consensus 71 e~valvG~nGSGKSTLl~~L~G~~~ 95 (1050)
-+++|-||+||||||..+.|+-.+.
T Consensus 4 i~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 4 IQIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 5999789998798999999999969
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.18 E-value=0.075 Score=26.64 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999997999998899999840466
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIVE 718 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~~ 718 (1050)
.+-+.||.|+||||++++++..+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 499987999988899999999987
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.17 E-value=0.069 Score=26.90 Aligned_cols=23 Identities=35% Similarity=0.354 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599982899999997398
Q 001580 72 LVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
-++|+|+.|+|||||++.+.+..
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999998099
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.13 E-value=0.075 Score=26.61 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=16.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999799999889999984046
Q 001580 696 VGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 696 ~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
+.++|+.||||||+.++|...+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.12 E-value=0.088 Score=26.12 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=14.0
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 96399699999799999889999984
Q 001580 689 TIPPSDKVGIVGRTGAGKSSMLNTLF 714 (1050)
Q Consensus 689 ~i~~Ge~~~ivG~~GaGKSTll~~l~ 714 (1050)
-+++|..+-|.|++|+|||++...+.
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 97689799998899887889999999
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=91.07 E-value=0.091 Score=25.99 Aligned_cols=24 Identities=38% Similarity=0.576 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999828999999973989
Q 001580 72 LVAIVGGTGEGKTSLISAMLGELP 95 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~~ 95 (1050)
+++|.||.||||||..+.|+-.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=91.06 E-value=0.11 Score=25.39 Aligned_cols=21 Identities=33% Similarity=0.676 Sum_probs=10.7
Q ss_pred EECCCEEEEECCCCCCHHHHH
Q ss_conf 609979999959998289999
Q 001580 67 IPVGSLVAIVGGTGEGKTSLI 87 (1050)
Q Consensus 67 i~~Ge~valvG~nGSGKSTLl 87 (1050)
+++|+++.|.|++|+|||+|+
T Consensus 23 i~~G~~~~I~G~~G~GKT~la 43 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFS 43 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHH
T ss_conf 969839999947999999999
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=91.04 E-value=0.11 Score=25.48 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=19.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9699999799999889999984046
Q 001580 693 SDKVGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 693 Ge~~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
.-++.|+||-||||||+.+.|.--+
T Consensus 6 ~mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 6 LLRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 2169998899998799999999997
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.01 E-value=0.13 Score=24.93 Aligned_cols=29 Identities=31% Similarity=0.434 Sum_probs=25.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 09979999959998289999999739899
Q 001580 68 PVGSLVAIVGGTGEGKTSLISAMLGELPP 96 (1050)
Q Consensus 68 ~~Ge~valvG~nGSGKSTLl~~L~G~~~~ 96 (1050)
.+|.++++-|..||||||++++|.-.+..
T Consensus 1 ~kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 1 GRGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 97689999899888699999999999971
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=90.99 E-value=0.081 Score=26.39 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599982899999997398
Q 001580 73 VAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 73 valvG~nGSGKSTLl~~L~G~~ 94 (1050)
++|+|++||||||+.+.|+-.+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=90.97 E-value=0.037 Score=28.91 Aligned_cols=41 Identities=7% Similarity=0.186 Sum_probs=29.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEECCEEEEECCCCC
Q ss_conf 979999959998289999999739899988706770928999247878
Q 001580 70 GSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 117 (1050)
Q Consensus 70 Ge~valvG~nGSGKSTLl~~L~G~~~~~~G~~~~~~~~Ig~v~Q~~~L 117 (1050)
.=+++|.|++||||||+.+.|...+... | -...+++|++..
T Consensus 4 ~pIIgIaG~SGSGKTTva~~l~~i~~~~-~------v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 4 HPIISVTGSSGAGTSTVKHTFDQIFRRE-G------VKAVSIEGDAFH 44 (288)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHH-T------CCEEEEEGGGGB
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHC-C------CCEEEEECCCCC
T ss_conf 8899998999780999999999997156-9------976999477787
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.96 E-value=0.12 Score=25.14 Aligned_cols=26 Identities=38% Similarity=0.464 Sum_probs=22.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 79999959998289999999739899
Q 001580 71 SLVAIVGGTGEGKTSLISAMLGELPP 96 (1050)
Q Consensus 71 e~valvG~nGSGKSTLl~~L~G~~~~ 96 (1050)
..+.|.||+||||||+.++|++++..
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 79998897998899999999998651
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=90.93 E-value=0.1 Score=25.70 Aligned_cols=26 Identities=15% Similarity=0.324 Sum_probs=17.2
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 63996999997999998899999840
Q 001580 690 IPPSDKVGIVGRTGAGKSSMLNTLFR 715 (1050)
Q Consensus 690 i~~Ge~~~ivG~~GaGKSTll~~l~g 715 (1050)
+++|+.+-|.|+.|+|||++..-+.-
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 62885999991799998999999999
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.86 E-value=0.099 Score=25.72 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=24.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 997999995999828999999973989
Q 001580 69 VGSLVAIVGGTGEGKTSLISAMLGELP 95 (1050)
Q Consensus 69 ~Ge~valvG~nGSGKSTLl~~L~G~~~ 95 (1050)
+|.++++-|..||||||+++.|.-.+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 987899989988879999999999999
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.77 E-value=0.098 Score=25.78 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799999889999984046
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
++.|+||-||||||+.+.|.-.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999999899999999996
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.64 E-value=0.13 Score=24.76 Aligned_cols=22 Identities=41% Similarity=0.668 Sum_probs=16.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998289999999739
Q 001580 72 LVAIVGGTGEGKTSLISAMLGE 93 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~ 93 (1050)
.++++|..|+|||||++.+.+.
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999996989999999709
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=90.56 E-value=0.096 Score=25.82 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799999889999984046
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
++||+|+..+|||||++.|++..
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~~ 29 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGSA 29 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 79999699854999999998236
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=90.50 E-value=0.11 Score=25.48 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=10.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999828999999973
Q 001580 72 LVAIVGGTGEGKTSLISAMLG 92 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G 92 (1050)
+++|.|+.|+|||||+..+..
T Consensus 53 ~igitG~pGaGKSTli~~l~~ 73 (323)
T d2qm8a1 53 RVGITGVPGVGKSTTIDALGS 73 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 986117998889999999999
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.42 E-value=0.2 Score=23.41 Aligned_cols=20 Identities=40% Similarity=0.665 Sum_probs=10.7
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99995999828999999973
Q 001580 73 VAIVGGTGEGKTSLISAMLG 92 (1050)
Q Consensus 73 valvG~nGSGKSTLl~~L~G 92 (1050)
++++|..|+|||||++.+.+
T Consensus 5 i~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899798999999970
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.37 E-value=0.084 Score=26.25 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=22.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 69999979999988999998404668
Q 001580 694 DKVGIVGRTGAGKSSMLNTLFRIVEL 719 (1050)
Q Consensus 694 e~~~ivG~~GaGKSTll~~l~g~~~p 719 (1050)
-.+.++|+.||||||+.+.|...+..
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~~ 28 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLNF 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 89999899999999999999999974
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.36 E-value=0.11 Score=25.43 Aligned_cols=23 Identities=26% Similarity=0.586 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599982899999997398
Q 001580 72 LVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
+++|+|+.||||||..+.|+-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=90.35 E-value=0.086 Score=26.20 Aligned_cols=28 Identities=21% Similarity=0.513 Sum_probs=25.0
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 6099799999599982899999997398
Q 001580 67 IPVGSLVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 67 i~~Ge~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
+.++.++.|+|+.||||||..+.|+-.+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 4678289998999998799999999986
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=90.35 E-value=0.043 Score=28.40 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999979999988999998404668
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIVEL 719 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~~p 719 (1050)
++||.|++||||||+.+.|...+..
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~ 30 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRR 30 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9999899978099999999999715
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=90.33 E-value=0.094 Score=25.90 Aligned_cols=30 Identities=23% Similarity=0.276 Sum_probs=16.9
Q ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 896399699999799999889999984046
Q 001580 688 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 688 l~i~~Ge~~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
+.+.+|++.+|+|+.|+|||||+..+....
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 564578755686799988789999999977
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.32 E-value=0.11 Score=25.42 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979999988999998404
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRI 716 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~ 716 (1050)
.|+|+|+.|+|||||++.+.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999809
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=90.28 E-value=0.11 Score=25.41 Aligned_cols=20 Identities=40% Similarity=0.805 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999599982899999997
Q 001580 72 LVAIVGGTGEGKTSLISAML 91 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~ 91 (1050)
+++|.|..||||||.++.+.
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99978988688999999999
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.26 E-value=0.1 Score=25.56 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=14.5
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99995999828999999973
Q 001580 73 VAIVGGTGEGKTSLISAMLG 92 (1050)
Q Consensus 73 valvG~nGSGKSTLl~~L~G 92 (1050)
++++|..|+|||||++.+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999198999999973
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=90.24 E-value=0.092 Score=25.98 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 799999599982899999997398
Q 001580 71 SLVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 71 e~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
+.+.|+|++||||||+.+.|+-.+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 988998899998899999999994
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=90.22 E-value=0.13 Score=24.93 Aligned_cols=21 Identities=38% Similarity=0.653 Sum_probs=11.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959998289999999739
Q 001580 73 VAIVGGTGEGKTSLISAMLGE 93 (1050)
Q Consensus 73 valvG~nGSGKSTLl~~L~G~ 93 (1050)
+|++|+..+|||||++.|+|.
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~ 28 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGV 28 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999934588499999999703
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.21 E-value=0.11 Score=25.28 Aligned_cols=42 Identities=14% Similarity=0.206 Sum_probs=27.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEECCEEEEECCCCC
Q ss_conf 9999959998289999999739899988706770928999247878
Q 001580 72 LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 117 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~~~~~G~~~~~~~~Ig~v~Q~~~L 117 (1050)
+++|.|+.|||||||...|.-.+....+ ....|..++.+...
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~~~----~~~~v~~iS~DdfY 70 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEKYG----GEKSIGYASIDDFY 70 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHG----GGSCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHC----CCCCEEEECCCCCC
T ss_conf 9983799878899999999999998727----78606763567777
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=90.20 E-value=0.076 Score=26.60 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=22.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 79999959998289999999739899
Q 001580 71 SLVAIVGGTGEGKTSLISAMLGELPP 96 (1050)
Q Consensus 71 e~valvG~nGSGKSTLl~~L~G~~~~ 96 (1050)
.+++|.|.+||||||+++.|+..+..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999898998989999999999987
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=90.19 E-value=0.14 Score=24.69 Aligned_cols=31 Identities=19% Similarity=0.255 Sum_probs=23.1
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9639969999979999988999998404668
Q 001580 689 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL 719 (1050)
Q Consensus 689 ~i~~Ge~~~ivG~~GaGKSTll~~l~g~~~p 719 (1050)
..+||.++.+.|+=||||||+.+.+..-+..
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 5799829999668776588999998764223
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=90.15 E-value=0.089 Score=26.07 Aligned_cols=26 Identities=42% Similarity=0.506 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 97999995999828999999973989
Q 001580 70 GSLVAIVGGTGEGKTSLISAMLGELP 95 (1050)
Q Consensus 70 Ge~valvG~nGSGKSTLl~~L~G~~~ 95 (1050)
..-+.+.||+|||||+++++|+.++.
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 88678668998882289999999829
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=90.06 E-value=0.13 Score=24.83 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=17.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99799999599982899999997398
Q 001580 69 VGSLVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 69 ~Ge~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
.+..+.|.|+.|+|||||++.++-..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.03 E-value=0.12 Score=25.09 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=11.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999799999889999984046
Q 001580 696 VGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 696 ~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
|+|-|.-||||||+++.|...+
T Consensus 3 I~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 3 IAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998998789999999999999
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=89.96 E-value=0.081 Score=26.38 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599982899999997398
Q 001580 72 LVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
+++|.|+.||||||+.+.|+-.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.94 E-value=0.16 Score=24.26 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=14.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998289999999739
Q 001580 72 LVAIVGGTGEGKTSLISAMLGE 93 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~ 93 (1050)
.++++|..|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.92 E-value=0.12 Score=25.16 Aligned_cols=21 Identities=43% Similarity=0.681 Sum_probs=14.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999828999999973
Q 001580 72 LVAIVGGTGEGKTSLISAMLG 92 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G 92 (1050)
.++++|..|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999971
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=89.91 E-value=0.085 Score=26.23 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=29.0
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE-ECCEE
Q ss_conf 9639969999979999988999998404668862899-98960
Q 001580 689 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL-IDGFD 730 (1050)
Q Consensus 689 ~i~~Ge~~~ivG~~GaGKSTll~~l~g~~~p~~G~i~-~~g~~ 730 (1050)
.++++..+.+.||.|+|||++.+.|.+++. |.+. +++.+
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~---~~~i~in~s~ 189 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG---GKALNVNLPL 189 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC---CEEECCSSCT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEECCC
T ss_conf 899767699989999888999999999859---9789997742
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.76 E-value=0.12 Score=25.07 Aligned_cols=20 Identities=35% Similarity=0.704 Sum_probs=12.4
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99995999828999999973
Q 001580 73 VAIVGGTGEGKTSLISAMLG 92 (1050)
Q Consensus 73 valvG~nGSGKSTLl~~L~G 92 (1050)
++++|..|+|||||++.+.+
T Consensus 7 i~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999098999999982
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=89.72 E-value=0.1 Score=25.56 Aligned_cols=40 Identities=18% Similarity=0.162 Sum_probs=27.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEECCEEEEECC
Q ss_conf 09979999959998289999999739899988706770928999247
Q 001580 68 PVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQV 114 (1050)
Q Consensus 68 ~~Ge~valvG~nGSGKSTLl~~L~G~~~~~~G~~~~~~~~Ig~v~Q~ 114 (1050)
+.-.+++++|++|+||||++--|+-.+.. .| ..|+++.=+
T Consensus 10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~-~g------~kV~lit~D 49 (211)
T d1j8yf2 10 KIPYVIMLVGVQGTGKATTAGKLAYFYKK-KG------FKVGLVGAD 49 (211)
T ss_dssp SSSEEEEEECSCCC----HHHHHHHHHHH-TT------CCEEEEECC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHH-CC------CCEEEEEEE
T ss_conf 99989999899999989999999999997-79------936999720
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=89.66 E-value=0.12 Score=25.01 Aligned_cols=45 Identities=22% Similarity=0.305 Sum_probs=29.9
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHH
Q ss_conf 9989998466748899989999999998738948998505810365
Q 001580 820 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTII 865 (1050)
Q Consensus 820 ~p~illLDEpts~lD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~ 865 (1050)
++.++++||.- .+.......+...+......+..|++++..+.+.
T Consensus 109 ~~~iilide~d-~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~ 153 (231)
T d1iqpa2 109 SFKIIFLDEAD-ALTQDAQQALRRTMEMFSSNVRFILSCNYSSKII 153 (231)
T ss_dssp SCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSC
T ss_pred CCEEEEEHHHH-HCCHHHHHHHHHHCCCCCCCEEEEECCCCHHHCH
T ss_conf 72288614344-3121478987641124776447886148766565
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=89.59 E-value=0.19 Score=23.63 Aligned_cols=42 Identities=19% Similarity=0.267 Sum_probs=30.9
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCCCEEEECCEE
Q ss_conf 96399699999799999889999984046-6886289998960
Q 001580 689 TIPPSDKVGIVGRTGAGKSSMLNTLFRIV-ELERGRILIDGFD 730 (1050)
Q Consensus 689 ~i~~Ge~~~ivG~~GaGKSTll~~l~g~~-~p~~G~i~~~g~~ 730 (1050)
-+++|.++-|.||+|+||||+.-.++... .+..--+++|...
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~ 92 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 92 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 9667358998057774789999999999870898799986544
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.58 E-value=0.13 Score=24.76 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599982899999997398
Q 001580 72 LVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
.++|+|+.||||||..+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.57 E-value=0.15 Score=24.48 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=14.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959998289999999739
Q 001580 73 VAIVGGTGEGKTSLISAMLGE 93 (1050)
Q Consensus 73 valvG~nGSGKSTLl~~L~G~ 93 (1050)
++++|..|+|||||++.+.+.
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999619
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=89.56 E-value=0.11 Score=25.33 Aligned_cols=26 Identities=35% Similarity=0.603 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 96999997999998899999840466
Q 001580 693 SDKVGIVGRTGAGKSSMLNTLFRIVE 718 (1050)
Q Consensus 693 Ge~~~ivG~~GaGKSTll~~l~g~~~ 718 (1050)
.-++||.|+-|||||||+..|...+.
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~~ 76 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLLT 76 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 15986117998889999999999876
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.54 E-value=0.16 Score=24.09 Aligned_cols=23 Identities=22% Similarity=0.557 Sum_probs=16.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599982899999997398
Q 001580 72 LVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
.++++|.+|+|||||++.+.+.-
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999967899999998688
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=89.54 E-value=0.03 Score=29.62 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=14.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998289999999739
Q 001580 72 LVAIVGGTGEGKTSLISAMLGE 93 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~ 93 (1050)
.++++|..++|||||++.|.|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=89.50 E-value=0.1 Score=25.58 Aligned_cols=33 Identities=21% Similarity=0.450 Sum_probs=23.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 69999979999988999998404668862899989
Q 001580 694 DKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 728 (1050)
Q Consensus 694 e~~~ivG~~GaGKSTll~~l~g~~~p~~G~i~~~g 728 (1050)
.-+.++||+|+|||.|.+.|...+. .--+.+++
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~~--~~~~~i~~ 82 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLAN--APFIKVEA 82 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT--CCEEEEEG
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC--CCHHCCCC
T ss_conf 6699989999888899999862132--21000344
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=89.44 E-value=0.13 Score=24.91 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=22.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0997999995999828999999973989
Q 001580 68 PVGSLVAIVGGTGEGKTSLISAMLGELP 95 (1050)
Q Consensus 68 ~~Ge~valvG~nGSGKSTLl~~L~G~~~ 95 (1050)
+++ -+.++||+|||||.|.++|+.++.
T Consensus 48 ~~~-~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 48 TPK-NILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCC-CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCC-EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 986-699989999888899999862132
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=89.37 E-value=0.13 Score=24.94 Aligned_cols=25 Identities=36% Similarity=0.397 Sum_probs=21.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9969999979999988999998404
Q 001580 692 PSDKVGIVGRTGAGKSSMLNTLFRI 716 (1050)
Q Consensus 692 ~Ge~~~ivG~~GaGKSTll~~l~g~ 716 (1050)
+.=++.++|..|+|||||++.+.+.
T Consensus 14 k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 14 QEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 8579999999998989999999668
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=89.35 E-value=0.14 Score=24.71 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=16.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998289999999739
Q 001580 72 LVAIVGGTGEGKTSLISAMLGE 93 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~ 93 (1050)
.++++|+.|+|||||++.+.+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998989999999719
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=89.31 E-value=0.15 Score=24.35 Aligned_cols=32 Identities=31% Similarity=0.428 Sum_probs=27.1
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 88609979999959998289999999739899
Q 001580 65 LDIPVGSLVAIVGGTGEGKTSLISAMLGELPP 96 (1050)
Q Consensus 65 L~i~~Ge~valvG~nGSGKSTLl~~L~G~~~~ 96 (1050)
...++|.+++|.|+-|||||||.+.++..+..
T Consensus 28 ~~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp HCCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 15799829999668776588999998764223
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=89.26 E-value=0.12 Score=25.14 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=16.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998289999999739
Q 001580 72 LVAIVGGTGEGKTSLISAMLGE 93 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~ 93 (1050)
.++++|..|+|||||++.+.+.
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998999999999648
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.22 E-value=0.27 Score=22.51 Aligned_cols=21 Identities=33% Similarity=0.639 Sum_probs=13.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999828999999973
Q 001580 72 LVAIVGGTGEGKTSLISAMLG 92 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G 92 (1050)
.++++|.+|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999999799999999973
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=89.20 E-value=0.11 Score=25.39 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=29.1
Q ss_pred ECEEEEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0008860997999995999828999999973989
Q 001580 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP 95 (1050)
Q Consensus 62 ~isL~i~~Ge~valvG~nGSGKSTLl~~L~G~~~ 95 (1050)
|.=+.+.+||..+|.|+.|+|||||+..|+....
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred EECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 4125645787556867999887899999999775
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.19 E-value=0.14 Score=24.57 Aligned_cols=19 Identities=32% Similarity=0.543 Sum_probs=11.5
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9999599982899999997
Q 001580 73 VAIVGGTGEGKTSLISAML 91 (1050)
Q Consensus 73 valvG~nGSGKSTLl~~L~ 91 (1050)
++++|..|+|||||++.+.
T Consensus 5 v~liG~~~vGKSsLi~rl~ 23 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYC 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999989959899999998
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.19 E-value=0.13 Score=24.76 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599982899999997398
Q 001580 73 VAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 73 valvG~nGSGKSTLl~~L~G~~ 94 (1050)
++++|..||||||+.+.|+-.+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=89.12 E-value=0.15 Score=24.35 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599982899999997398
Q 001580 72 LVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
+++|+|+.||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.06 E-value=0.17 Score=24.06 Aligned_cols=21 Identities=33% Similarity=0.664 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999998899999840
Q 001580 695 KVGIVGRTGAGKSSMLNTLFR 715 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g 715 (1050)
+++++|..|+|||||++-+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899798999999970
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.04 E-value=0.16 Score=24.10 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=23.7
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 963996999997999998899999840
Q 001580 689 TIPPSDKVGIVGRTGAGKSSMLNTLFR 715 (1050)
Q Consensus 689 ~i~~Ge~~~ivG~~GaGKSTll~~l~g 715 (1050)
-+++|+.+-|.|+.|+||||+..-+.-
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 986996999983899988999999999
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.96 E-value=0.21 Score=23.36 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979999988999998404
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRI 716 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~ 716 (1050)
++.++|+.|+|||||++.+.+-
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999996989999999709
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=88.94 E-value=0.031 Score=29.50 Aligned_cols=23 Identities=39% Similarity=0.622 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799999889999984046
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
+++++|+.++|||||++.|+|.-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.93 E-value=0.15 Score=24.35 Aligned_cols=20 Identities=35% Similarity=0.591 Sum_probs=12.9
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99995999828999999973
Q 001580 73 VAIVGGTGEGKTSLISAMLG 92 (1050)
Q Consensus 73 valvG~nGSGKSTLl~~L~G 92 (1050)
++++|..|+|||||++.+.+
T Consensus 6 ivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999399999999962
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.85 E-value=0.19 Score=23.66 Aligned_cols=28 Identities=18% Similarity=0.360 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHH-HCCCCCCCC
Q ss_conf 9999959998289999999-739899988
Q 001580 72 LVAIVGGTGEGKTSLISAM-LGELPPVSD 99 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L-~G~~~~~~G 99 (1050)
.+.++|.+|+|||||++-+ .+...|+.|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 79999899998899999895098278888
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.81 E-value=0.23 Score=23.05 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599982899999997398
Q 001580 72 LVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
.++++|..|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989929999999997286
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=88.70 E-value=0.18 Score=23.85 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=14.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999998899999840
Q 001580 695 KVGIVGRTGAGKSSMLNTLFR 715 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g 715 (1050)
++||.|+-||||||..+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999979999889999999998
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.69 E-value=0.23 Score=23.01 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=15.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998289999999739
Q 001580 72 LVAIVGGTGEGKTSLISAMLGE 93 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~ 93 (1050)
.++++|..|+|||||++.+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993999999999719
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.69 E-value=0.2 Score=23.53 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=13.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599982899999997398
Q 001580 73 VAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 73 valvG~nGSGKSTLl~~L~G~~ 94 (1050)
++++|..|+|||||++.+.+..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998989939999999981885
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.60 E-value=0.19 Score=23.58 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999828999999973989
Q 001580 72 LVAIVGGTGEGKTSLISAMLGELP 95 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~~ 95 (1050)
.+.|.||+|+||||++++++.++.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 499987999988899999999987
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=88.59 E-value=0.13 Score=24.84 Aligned_cols=22 Identities=50% Similarity=0.684 Sum_probs=10.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599982899999997398
Q 001580 73 VAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 73 valvG~nGSGKSTLl~~L~G~~ 94 (1050)
+.+.||.|||||+++++++.++
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 8876689888359999999873
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=88.51 E-value=0.1 Score=25.62 Aligned_cols=22 Identities=18% Similarity=0.415 Sum_probs=14.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999799999889999984046
Q 001580 696 VGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 696 ~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
+-+.||.|.||||+++++.+.+
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8988979987888999999984
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=88.49 E-value=0.17 Score=23.94 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979999988999998404
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRI 716 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~ 716 (1050)
++.++|+.|+|||||++.+.+-
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998989999999719
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=88.45 E-value=0.1 Score=25.65 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 9999799999889999984046688
Q 001580 696 VGIVGRTGAGKSSMLNTLFRIVELE 720 (1050)
Q Consensus 696 ~~ivG~~GaGKSTll~~l~g~~~p~ 720 (1050)
+-+.||.|+||||+.+++...+...
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~~ 62 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQTN 62 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf 8987999973889999998503888
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.45 E-value=0.22 Score=23.08 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=16.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998289999999739
Q 001580 72 LVAIVGGTGEGKTSLISAMLGE 93 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~ 93 (1050)
.++++|..|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.42 E-value=0.24 Score=22.84 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=16.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998289999999739
Q 001580 72 LVAIVGGTGEGKTSLISAMLGE 93 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~ 93 (1050)
.++|+|..|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999729
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.41 E-value=0.23 Score=22.93 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979999988999998404
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRI 716 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~ 716 (1050)
++.++|..|+|||||++.+.+-
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999739
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.39 E-value=0.16 Score=24.18 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=12.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999828999999973
Q 001580 72 LVAIVGGTGEGKTSLISAMLG 92 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G 92 (1050)
.++++|..|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899298999999971
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=88.35 E-value=0.47 Score=20.71 Aligned_cols=39 Identities=10% Similarity=0.147 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999999999999962
Q 001580 602 TMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNY 640 (1050)
Q Consensus 602 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~Ri~~~ 640 (1050)
+.|.++++.........++............+..-..++
T Consensus 271 t~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri 309 (319)
T d3b60a2 271 TAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTL 309 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999999999999999999999999999999999999
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.33 E-value=0.21 Score=23.31 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=25.1
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8609979999959998289999999739
Q 001580 66 DIPVGSLVAIVGGTGEGKTSLISAMLGE 93 (1050)
Q Consensus 66 ~i~~Ge~valvG~nGSGKSTLl~~L~G~ 93 (1050)
-+++|+++.|.|++|||||++..-++..
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~~ 60 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCVT 60 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9768979999889988788999999999
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=88.33 E-value=0.16 Score=24.22 Aligned_cols=20 Identities=35% Similarity=0.506 Sum_probs=12.1
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99995999828999999973
Q 001580 73 VAIVGGTGEGKTSLISAMLG 92 (1050)
Q Consensus 73 valvG~nGSGKSTLl~~L~G 92 (1050)
+|++|+.++|||||++.|++
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99994789849999999999
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.29 E-value=0.17 Score=24.03 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999998899999840
Q 001580 695 KVGIVGRTGAGKSSMLNTLFR 715 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g 715 (1050)
++.++|..|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999999799999999973
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.29 E-value=0.23 Score=23.00 Aligned_cols=22 Identities=41% Similarity=0.694 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979999988999998404
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRI 716 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~ 716 (1050)
++.++|+.|+|||||++.+.+-
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999829
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.28 E-value=0.17 Score=23.94 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999799999889999984046
Q 001580 696 VGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 696 ~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
+-+.||+|+||||+++++...+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=88.21 E-value=0.17 Score=24.04 Aligned_cols=23 Identities=26% Similarity=0.585 Sum_probs=14.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99997999998899999840466
Q 001580 696 VGIVGRTGAGKSSMLNTLFRIVE 718 (1050)
Q Consensus 696 ~~ivG~~GaGKSTll~~l~g~~~ 718 (1050)
+-++||+|+|||-|.+.|.+++.
T Consensus 52 ILliGPTGvGKTlLAr~LAk~l~ 74 (443)
T d1g41a_ 52 ILMIGPTGVGKTEIARRLAKLAN 74 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 79989999889999999998738
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=88.17 E-value=0.22 Score=23.15 Aligned_cols=22 Identities=36% Similarity=0.662 Sum_probs=13.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599982899999997398
Q 001580 73 VAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 73 valvG~nGSGKSTLl~~L~G~~ 94 (1050)
++++|+..+|||||++.|+|..
T Consensus 11 i~iiGhVd~GKSTL~~~L~~~~ 32 (205)
T d2qn6a3 11 IGVVGHVDHGKTTLVQAITGIW 32 (205)
T ss_dssp EEEECSTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999724886999999997041
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=88.12 E-value=0.17 Score=23.98 Aligned_cols=23 Identities=13% Similarity=0.291 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599982899999997398
Q 001580 72 LVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
.++++|+.||||||..+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998799999899999999986
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.12 E-value=0.26 Score=22.60 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=16.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599982899999997398
Q 001580 72 LVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
.++++|..|+|||||++.+.+..
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~~ 31 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDDT 31 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 89999989908899999997199
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=88.09 E-value=0.33 Score=21.81 Aligned_cols=32 Identities=31% Similarity=0.456 Sum_probs=19.2
Q ss_pred CEEEEEEEECCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 100023896399699999799999889999984
Q 001580 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF 714 (1050)
Q Consensus 682 ~l~~isl~i~~Ge~~~ivG~~GaGKSTll~~l~ 714 (1050)
.++..-+.+ .|.-+.|.|++|+||||+...|.
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred EEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHH
T ss_conf 178999999-99999998189999899999999
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.05 E-value=0.16 Score=24.22 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=16.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 799999599982899999997398
Q 001580 71 SLVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 71 e~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
.+++++|+.++|||||+|.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 999988999997999999980998
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.05 E-value=0.22 Score=23.11 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979999988999998404
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRI 716 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~ 716 (1050)
++.++|..|+|||||++.+.+-
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=88.00 E-value=0.36 Score=21.58 Aligned_cols=34 Identities=21% Similarity=0.409 Sum_probs=26.7
Q ss_pred CCEEECEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 83110008860997999995999828999999973
Q 001580 58 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG 92 (1050)
Q Consensus 58 ~~L~~isL~i~~Ge~valvG~nGSGKSTLl~~L~G 92 (1050)
..++..-+.+ .|.=+.+.|++|+||||+.-.+.-
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred CEEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 3178999999-999999981899998999999998
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.99 E-value=0.46 Score=20.77 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=15.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998289999999739
Q 001580 72 LVAIVGGTGEGKTSLISAMLGE 93 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~ 93 (1050)
.++++|..|+|||||++.+.+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999719
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.96 E-value=0.25 Score=22.67 Aligned_cols=20 Identities=25% Similarity=0.581 Sum_probs=14.2
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99995999828999999973
Q 001580 73 VAIVGGTGEGKTSLISAMLG 92 (1050)
Q Consensus 73 valvG~nGSGKSTLl~~L~G 92 (1050)
++++|..|+|||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999098999999961
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=87.94 E-value=0.31 Score=22.04 Aligned_cols=29 Identities=24% Similarity=0.519 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 69999979999988999998404668862
Q 001580 694 DKVGIVGRTGAGKSSMLNTLFRIVELERG 722 (1050)
Q Consensus 694 e~~~ivG~~GaGKSTll~~l~g~~~p~~G 722 (1050)
..+-|.||.|+||||+++.+...+....+
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 81688898999899999999999754468
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=87.94 E-value=0.25 Score=22.70 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=24.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 97999995999828999999973989998
Q 001580 70 GSLVAIVGGTGEGKTSLISAMLGELPPVS 98 (1050)
Q Consensus 70 Ge~valvG~nGSGKSTLl~~L~G~~~~~~ 98 (1050)
...+.|.|+.|+||||+++.++..+....
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~ 71 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKT 71 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 88168889899989999999999975446
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=87.92 E-value=0.13 Score=24.76 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799999889999984046
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
-+-+.||.|+|||++.+.+....
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 79988969998899999986201
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=87.89 E-value=0.18 Score=23.75 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=15.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599982899999997398
Q 001580 72 LVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
.+||||..-+|||||+|+|.|--
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred CEEEECCCCCCHHHHHHHHHCCC
T ss_conf 17688999998999999997889
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.88 E-value=0.18 Score=23.80 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=15.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999828999999973
Q 001580 72 LVAIVGGTGEGKTSLISAMLG 92 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G 92 (1050)
.++++|..|+|||||++.+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899098999999984
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.85 E-value=0.24 Score=22.84 Aligned_cols=20 Identities=35% Similarity=0.639 Sum_probs=14.9
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99995999828999999973
Q 001580 73 VAIVGGTGEGKTSLISAMLG 92 (1050)
Q Consensus 73 valvG~nGSGKSTLl~~L~G 92 (1050)
++++|..|+|||||++.+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999799999999984
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=87.81 E-value=0.22 Score=23.21 Aligned_cols=24 Identities=25% Similarity=0.553 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999997999998899999840466
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIVE 718 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~~ 718 (1050)
.+||+|...+|||||++.|+|...
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999993458849999999970344
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=87.76 E-value=0.17 Score=24.01 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979999988999998404
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRI 716 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~ 716 (1050)
++.++|+.|+|||||++.+.+-
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998999999999648
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=87.66 E-value=0.24 Score=22.86 Aligned_cols=32 Identities=19% Similarity=0.332 Sum_probs=25.1
Q ss_pred CEEEEEE-EECCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 1000238-9639969999979999988999998
Q 001580 682 VLHGLSF-TIPPSDKVGIVGRTGAGKSSMLNTL 713 (1050)
Q Consensus 682 ~l~~isl-~i~~Ge~~~ivG~~GaGKSTll~~l 713 (1050)
-|+++-- -+++|+.+-|.|++|+|||++..-+
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHH
T ss_conf 798855689969839999947999999999999
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.59 E-value=0.22 Score=23.10 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599982899999997398
Q 001580 72 LVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
.++|.|+.||||||..+.|+-.+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.59 E-value=0.23 Score=23.04 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979999988999998404
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRI 716 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~ 716 (1050)
++.++|+.|+|||||++.+.+-
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999619
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.52 E-value=0.22 Score=23.13 Aligned_cols=25 Identities=36% Similarity=0.643 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999959998289999999739899
Q 001580 72 LVAIVGGTGEGKTSLISAMLGELPP 96 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~~~ 96 (1050)
+++|-|.-||||||+++.|...+..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~~ 26 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8999899878999999999999987
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.44 E-value=0.4 Score=21.20 Aligned_cols=21 Identities=43% Similarity=0.665 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999998899999840
Q 001580 695 KVGIVGRTGAGKSSMLNTLFR 715 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g 715 (1050)
++.++|..|+|||||++-+..
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999984
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.42 E-value=0.22 Score=23.13 Aligned_cols=21 Identities=33% Similarity=0.370 Sum_probs=14.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999828999999973
Q 001580 72 LVAIVGGTGEGKTSLISAMLG 92 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G 92 (1050)
.++++|..|+|||||++.+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999398999999982
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=87.42 E-value=0.2 Score=23.50 Aligned_cols=20 Identities=25% Similarity=0.567 Sum_probs=13.0
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999799999889999984
Q 001580 695 KVGIVGRTGAGKSSMLNTLF 714 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~ 714 (1050)
-+||+|+.|||||||+..|+
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 99999589899899999999
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.36 E-value=0.24 Score=22.80 Aligned_cols=29 Identities=24% Similarity=0.462 Sum_probs=23.5
Q ss_pred CEEEEECCCCCCHHHHHHHH-HCCCCCCCC
Q ss_conf 69999979999988999998-404668862
Q 001580 694 DKVGIVGRTGAGKSSMLNTL-FRIVELERG 722 (1050)
Q Consensus 694 e~~~ivG~~GaGKSTll~~l-~g~~~p~~G 722 (1050)
-++.++|.+|+|||||++-+ .+...|+-|
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 779999899998899999895098278888
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=87.33 E-value=0.43 Score=20.96 Aligned_cols=24 Identities=42% Similarity=0.618 Sum_probs=20.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 969999979999988999998404
Q 001580 693 SDKVGIVGRTGAGKSSMLNTLFRI 716 (1050)
Q Consensus 693 Ge~~~ivG~~GaGKSTll~~l~g~ 716 (1050)
+=++||||---+|||||+++|++-
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 834888899999889999999779
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=87.31 E-value=0.23 Score=23.03 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=23.7
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 860997999995999828999999973
Q 001580 66 DIPVGSLVAIVGGTGEGKTSLISAMLG 92 (1050)
Q Consensus 66 ~i~~Ge~valvG~nGSGKSTLl~~L~G 92 (1050)
-+++|+++.|.|++|||||||.--++-
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~~ 58 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLAV 58 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 955887999985898988999999999
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.28 E-value=0.31 Score=22.01 Aligned_cols=22 Identities=18% Similarity=0.468 Sum_probs=15.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998289999999739
Q 001580 72 LVAIVGGTGEGKTSLISAMLGE 93 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~ 93 (1050)
.++++|..|+|||||++-+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.27 E-value=0.22 Score=23.11 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=12.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999828999999973
Q 001580 72 LVAIVGGTGEGKTSLISAMLG 92 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G 92 (1050)
.++++|..|+|||||++.+.+
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999974
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=87.26 E-value=0.24 Score=22.84 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=22.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3996999997999998899999840466
Q 001580 691 PPSDKVGIVGRTGAGKSSMLNTLFRIVE 718 (1050)
Q Consensus 691 ~~Ge~~~ivG~~GaGKSTll~~l~g~~~ 718 (1050)
..+..+.|.||.|+|||||++.++....
T Consensus 27 ~~~~~i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 27 LRAPITLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp TCSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0598799986999829999999999779
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.22 E-value=0.23 Score=22.95 Aligned_cols=21 Identities=43% Similarity=0.725 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999998899999840
Q 001580 695 KVGIVGRTGAGKSSMLNTLFR 715 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g 715 (1050)
++.++|..|+|||||++-+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999971
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.18 E-value=0.23 Score=22.97 Aligned_cols=21 Identities=33% Similarity=0.600 Sum_probs=15.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999828999999973
Q 001580 72 LVAIVGGTGEGKTSLISAMLG 92 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G 92 (1050)
.++++|..|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899499999999973
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.16 E-value=0.21 Score=23.29 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=13.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998289999999739
Q 001580 72 LVAIVGGTGEGKTSLISAMLGE 93 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~ 93 (1050)
.++++|.+|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993889999999719
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=87.14 E-value=0.2 Score=23.39 Aligned_cols=125 Identities=21% Similarity=0.251 Sum_probs=59.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEECCEEEEECCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCHHHHH
Q ss_conf 99999599982899999997398999887067709289992478787634899861499999889999999809378984
Q 001580 72 LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLD 151 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~~~~~G~~~~~~~~Ig~v~Q~~~L~~~TV~enI~~g~~~~~~~~~~~~~~~~L~~~i~ 151 (1050)
-+||+|+.|+|||||...|+....... .+ |-+.+.++.. .+.+++.++.+....-. .--
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~-----~~---g~v~~g~~~~------------D~~~~E~~r~~ti~~~~-~~~ 62 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKE-----RR---GRVEEGTTTT------------DYTPEAKLHRTTVRTGV-APL 62 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSS-----SC---CCGGGTCCSS------------CCSHHHHHTTSCCSCEE-EEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCH-----HH---CCCHHCCCCC------------CCHHHHHHHCCEEEEEC-CCC
T ss_conf 999994889809999999999709755-----30---6622221135------------62698887387687510-222
Q ss_pred CCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCC
Q ss_conf 0999996312579987-797899999999987029989999397888598999999999970015994899951591
Q 001580 152 LLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL 227 (1050)
Q Consensus 152 ~l~~g~~t~ig~~g~~-LSGGQKqRiaLARAL~~~~~IllLDEpts~LD~~s~~~i~~~ll~~~~~~~T~IlvTH~l 227 (1050)
.|.+...+.++-+|.. .+|.-.+-+.. .|.-|+++| +..++-+.+++ +|+.+... +.-.+++-+.+
T Consensus 63 ~~~~~~~n~iDtPGh~dF~~e~~~al~~-----~D~avlvvd-a~~Gv~~~t~~-~~~~~~~~---~~p~~i~iNk~ 129 (267)
T d2dy1a2 63 LFRGHRVFLLDAPGYGDFVGEIRGALEA-----ADAALVAVS-AEAGVQVGTER-AWTVAERL---GLPRMVVVTKL 129 (267)
T ss_dssp EETTEEEEEEECCCSGGGHHHHHHHHHH-----CSEEEEEEE-TTTCSCHHHHH-HHHHHHHT---TCCEEEEEECG
T ss_pred CCCCCCEEEECCCCHHHHHHHHHHHHCC-----CCCEEEEEE-CCCCCCCHHHH-HHHHHHHC---CCCCCCCCCCC
T ss_conf 2343210688068155433556543124-----673389842-35774211578-87765540---44310133320
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.13 E-value=0.21 Score=23.28 Aligned_cols=22 Identities=23% Similarity=0.602 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998289999999739
Q 001580 72 LVAIVGGTGEGKTSLISAMLGE 93 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~ 93 (1050)
.++++|..|+|||||++.+.+.
T Consensus 7 KI~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990999999999709
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.12 E-value=0.31 Score=22.05 Aligned_cols=21 Identities=38% Similarity=0.605 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999998899999840
Q 001580 695 KVGIVGRTGAGKSSMLNTLFR 715 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g 715 (1050)
++.++|..|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.06 E-value=0.22 Score=23.17 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=12.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799999889999984046
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
.++|-|+-||||||+++.|.-.+
T Consensus 4 ~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 4 RLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998998885999999999987
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.04 E-value=0.19 Score=23.57 Aligned_cols=26 Identities=38% Similarity=0.405 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99699999799999889999984046
Q 001580 692 PSDKVGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 692 ~Ge~~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
|=-+|+|+||.++|||||++.|.|..
T Consensus 31 ~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 31 PMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 87999988999997999999980998
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=86.96 E-value=0.24 Score=22.80 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=20.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 799999599982899999997398
Q 001580 71 SLVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 71 e~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
.+++|.|.-||||||..+.|...+
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~~ 25 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSNY 25 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 899997999988999999999868
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.94 E-value=0.24 Score=22.81 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=15.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999828999999973
Q 001580 72 LVAIVGGTGEGKTSLISAMLG 92 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G 92 (1050)
.++++|..|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999298999999973
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.85 E-value=0.27 Score=22.43 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979999988999998404
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRI 716 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~ 716 (1050)
++.++|..|+|||||++.+.+-
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996789999999868
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.80 E-value=0.5 Score=20.51 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=14.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999828999999973
Q 001580 72 LVAIVGGTGEGKTSLISAMLG 92 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G 92 (1050)
.++++|..|+|||||++-+.+
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899789999999973
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=86.78 E-value=0.28 Score=22.41 Aligned_cols=25 Identities=36% Similarity=0.498 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999959998289999999739899
Q 001580 72 LVAIVGGTGEGKTSLISAMLGELPP 96 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~~~ 96 (1050)
-+.+.||+|+||||+.++++.++..
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~ 61 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQT 61 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 4898799997388999999850388
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.74 E-value=0.54 Score=20.25 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=15.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999828999999973
Q 001580 72 LVAIVGGTGEGKTSLISAMLG 92 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G 92 (1050)
.++++|..|+|||||++.+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999970
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.70 E-value=0.2 Score=23.53 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=14.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599982899999997398
Q 001580 73 VAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 73 valvG~nGSGKSTLl~~L~G~~ 94 (1050)
+-|.||.|||||+++++++.+.
T Consensus 41 iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCCHHHHHHHHHHH
T ss_conf 6876699888308999999874
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=86.69 E-value=0.27 Score=22.54 Aligned_cols=29 Identities=24% Similarity=0.341 Sum_probs=25.1
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 86099799999599982899999997398
Q 001580 66 DIPVGSLVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 66 ~i~~Ge~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
-+++|+++.|.|++|+|||+++.-++-..
T Consensus 30 Gl~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 30 GLESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 86288599999179999899999999999
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=86.69 E-value=0.27 Score=22.49 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=22.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99799999599982899999997398
Q 001580 69 VGSLVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 69 ~Ge~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
+.-.++|+|+.||||||+.+.|+-.+
T Consensus 5 r~mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 5 RLLRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 62169998899998799999999997
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.66 E-value=0.27 Score=22.43 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999997999998899999840466
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIVE 718 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~~ 718 (1050)
++.++|..|+|||||++.+.+...
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999989899399999999818856
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.60 E-value=0.3 Score=22.10 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=19.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 6999997999998899999840
Q 001580 694 DKVGIVGRTGAGKSSMLNTLFR 715 (1050)
Q Consensus 694 e~~~ivG~~GaGKSTll~~l~g 715 (1050)
-++.|+|..|+|||||++.+.+
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 3899999899298999999971
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=86.57 E-value=0.25 Score=22.70 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=18.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999997999998899999840466
Q 001580 694 DKVGIVGRTGAGKSSMLNTLFRIVE 718 (1050)
Q Consensus 694 e~~~ivG~~GaGKSTll~~l~g~~~ 718 (1050)
=++||+|.-.+|||||+++|++--.
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~~~ 35 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKSVL 35 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHSTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 3799978999989999999977898
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=86.56 E-value=0.32 Score=21.96 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=22.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC-CC
Q ss_conf 999997999998899999840466-88
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIVE-LE 720 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~~-p~ 720 (1050)
.++++|.-.||||||+++|+|.-- |.
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~lP~ 52 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDFLPR 52 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCCCCC
T ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCC
T ss_conf 599981898979999999968997887
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=86.54 E-value=0.54 Score=20.25 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999959998289999999739899
Q 001580 72 LVAIVGGTGEGKTSLISAMLGELPP 96 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~~~ 96 (1050)
++.|-|.-|+||||+++.|...+..
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~ 32 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASG 32 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9999888667899999999998656
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.54 E-value=0.24 Score=22.81 Aligned_cols=21 Identities=33% Similarity=0.640 Sum_probs=10.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999828999999973
Q 001580 72 LVAIVGGTGEGKTSLISAMLG 92 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G 92 (1050)
.++++|..|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799698999999973
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=86.54 E-value=0.51 Score=20.42 Aligned_cols=20 Identities=35% Similarity=0.582 Sum_probs=10.2
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999599982899999997
Q 001580 72 LVAIVGGTGEGKTSLISAML 91 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~ 91 (1050)
.++++|..|+|||||++.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~ 25 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999989958899999997
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.53 E-value=0.33 Score=21.78 Aligned_cols=23 Identities=39% Similarity=0.457 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799999889999984046
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIV 717 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~ 717 (1050)
++.++|..|+|||||++-+.+--
T Consensus 5 KivvvG~~~vGKTsli~r~~~~~ 27 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDKR 27 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999939999999996299
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=86.52 E-value=0.23 Score=23.04 Aligned_cols=54 Identities=20% Similarity=0.338 Sum_probs=34.0
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEECCCCCHHHHHHHEEE
Q ss_conf 9639969999979999988999998404668862-89998960689895887521278
Q 001580 689 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG-RILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 689 ~i~~Ge~~~ivG~~GaGKSTll~~l~g~~~p~~G-~i~~~g~~~~~~~~~~~r~~i~~ 745 (1050)
-++.|.++-|.|+.|+||||+...++....-..| -+++|... .+++. +.+++|+
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~--~~~~~-~a~~~Gv 107 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH--ALDPV-YARALGV 107 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCHH-HHHHTTC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC--CCCHH-HHHHHCC
T ss_conf 8667547898058765227999999999970799899998876--58999-9998289
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=86.52 E-value=0.2 Score=23.51 Aligned_cols=24 Identities=33% Similarity=0.364 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999828999999973989
Q 001580 72 LVAIVGGTGEGKTSLISAMLGELP 95 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~~ 95 (1050)
.+.|.||+|+||||++++++.++.
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 699978999748799999999987
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=86.35 E-value=0.25 Score=22.67 Aligned_cols=27 Identities=26% Similarity=0.613 Sum_probs=22.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 9999979999988999998404668862
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIVELERG 722 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~~p~~G 722 (1050)
.|||+|.--+|||||+++|+|. .+..|
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~-~~~v~ 28 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV-DVEIA 28 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-------
T ss_pred CEEEECCCCCCHHHHHHHHHCC-CCCHH
T ss_conf 1768899999899999999788-97032
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=86.34 E-value=0.29 Score=22.30 Aligned_cols=32 Identities=28% Similarity=0.482 Sum_probs=27.2
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 88609979999959998289999999739899
Q 001580 65 LDIPVGSLVAIVGGTGEGKTSLISAMLGELPP 96 (1050)
Q Consensus 65 L~i~~Ge~valvG~nGSGKSTLl~~L~G~~~~ 96 (1050)
=-+++|.++-+.|++||||||++-.++-....
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~ 80 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR 80 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 99667358998057774789999999999870
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=86.31 E-value=0.21 Score=23.25 Aligned_cols=41 Identities=22% Similarity=0.288 Sum_probs=29.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEC----CEEEEECCC
Q ss_conf 99999599982899999997398999887067709----289992478
Q 001580 72 LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG----TVAYVPQVS 115 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~~~~~G~~~~~~~----~Ig~v~Q~~ 115 (1050)
=+.++||+|||||-|.+.|++.+... .+.... .+|||..+-
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~VP---Fv~~daT~fTeaGYvG~DV 95 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANAP---FIKVEATKFTEVGYVGKEV 95 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCC---EEEEEGGGGC----CCCCT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCC---EEEEECCEEEECCEEECCH
T ss_conf 47998999988999999999873898---8986255114111110444
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.28 E-value=0.32 Score=21.89 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999997999998899999840466
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIVE 718 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~~ 718 (1050)
.++++|.-.||||||+++|+|.--
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~~ 51 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 699976898979999999968986
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.20 E-value=0.39 Score=21.31 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=13.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999828999999973
Q 001580 72 LVAIVGGTGEGKTSLISAMLG 92 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G 92 (1050)
.++++|..|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999985
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.15 E-value=0.39 Score=21.32 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979999988999998404
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRI 716 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~ 716 (1050)
++.++|..|+|||||++-+.+-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993999999999719
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.12 E-value=0.28 Score=22.32 Aligned_cols=29 Identities=31% Similarity=0.583 Sum_probs=20.1
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 88609979999959998289999999739
Q 001580 65 LDIPVGSLVAIVGGTGEGKTSLISAMLGE 93 (1050)
Q Consensus 65 L~i~~Ge~valvG~nGSGKSTLl~~L~G~ 93 (1050)
+.+-+||+++|.|..|+|||+|+..++.-
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 56367887776679998989999999998
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.11 E-value=0.31 Score=22.08 Aligned_cols=39 Identities=23% Similarity=0.399 Sum_probs=29.2
Q ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCC-CCCCCCEE
Q ss_conf 2389639969999979999988999998404-66886289
Q 001580 686 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI-VELERGRI 724 (1050)
Q Consensus 686 isl~i~~Ge~~~ivG~~GaGKSTll~~l~g~-~~p~~G~i 724 (1050)
.=+.+.+|++++|+|+.|+|||||+..+..- .+.+.+.+
T Consensus 61 ~l~pigkGQr~~If~~~g~GKt~l~~~i~~~~~~~~~~v~ 100 (276)
T d2jdid3 61 LLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS 100 (276)
T ss_dssp HHSCEETTCEEEEEECTTSSHHHHHHHHHHHHTTTCSSEE
T ss_pred EECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEE
T ss_conf 0256367887776679998989999999998876179969
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.09 E-value=0.29 Score=22.28 Aligned_cols=21 Identities=38% Similarity=0.751 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999998899999840
Q 001580 695 KVGIVGRTGAGKSSMLNTLFR 715 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g 715 (1050)
++.++|..|+|||||++-+.+
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899789999999973
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.02 E-value=0.39 Score=21.30 Aligned_cols=22 Identities=36% Similarity=0.535 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979999988999998404
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRI 716 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~ 716 (1050)
++.|+|..|+|||||++-+.+-
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999729
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.94 E-value=0.31 Score=22.03 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599982899999997398
Q 001580 72 LVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
.++|+|+.||||||+.+.|+-.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999999899999999996
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.92 E-value=0.34 Score=21.71 Aligned_cols=22 Identities=23% Similarity=0.546 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979999988999998404
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRI 716 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~ 716 (1050)
++.++|..|+|||||++.+.+-
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.89 E-value=0.28 Score=22.34 Aligned_cols=45 Identities=24% Similarity=0.381 Sum_probs=30.2
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHH
Q ss_conf 9989998466748899989999999998738948998505810365
Q 001580 820 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTII 865 (1050)
Q Consensus 820 ~p~illLDEpts~lD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~ 865 (1050)
+..++++||.-. +.......+...+......+..++++++.+.+.
T Consensus 101 ~~kviiiDe~d~-~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i~ 145 (224)
T d1sxjb2 101 KHKIVILDEADS-MTAGAQQALRRTMELYSNSTRFAFACNQSNKII 145 (224)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSC
T ss_pred CEEEEEEECCCC-CCHHHHHHHHHHCCCCCCCEEEEECCCCHHHHH
T ss_conf 359999824432-321577877520112333336653147430210
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.74 E-value=0.17 Score=24.05 Aligned_cols=20 Identities=25% Similarity=0.529 Sum_probs=12.6
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99995999828999999973
Q 001580 73 VAIVGGTGEGKTSLISAMLG 92 (1050)
Q Consensus 73 valvG~nGSGKSTLl~~L~G 92 (1050)
++++|..|+|||||++.+++
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999499999999970
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=85.74 E-value=0.17 Score=23.94 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=14.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998289999999739
Q 001580 72 LVAIVGGTGEGKTSLISAMLGE 93 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~ 93 (1050)
.++++|..|+|||||++.+.+.
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999889999887338
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.63 E-value=0.43 Score=20.99 Aligned_cols=21 Identities=19% Similarity=0.449 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999998899999840
Q 001580 695 KVGIVGRTGAGKSSMLNTLFR 715 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g 715 (1050)
++.++|..|+|||||++-+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999298999999973
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.56 E-value=0.32 Score=21.96 Aligned_cols=21 Identities=38% Similarity=0.673 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999998899999840
Q 001580 695 KVGIVGRTGAGKSSMLNTLFR 715 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g 715 (1050)
++.++|..|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999970
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=85.56 E-value=0.59 Score=19.92 Aligned_cols=23 Identities=35% Similarity=0.307 Sum_probs=13.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 99699999799999889999984
Q 001580 692 PSDKVGIVGRTGAGKSSMLNTLF 714 (1050)
Q Consensus 692 ~Ge~~~ivG~~GaGKSTll~~l~ 714 (1050)
.|.-+.|.|++|+||||+...|.
T Consensus 13 ~g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 13 YGLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHHH
T ss_conf 99999998089999899999999
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.54 E-value=0.39 Score=21.29 Aligned_cols=24 Identities=29% Similarity=0.601 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999997999998899999840466
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIVE 718 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~~ 718 (1050)
++.++|..|+|||||++.+.+...
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 999999899299999999972867
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.51 E-value=0.33 Score=21.83 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=19.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 69999979999988999998404
Q 001580 694 DKVGIVGRTGAGKSSMLNTLFRI 716 (1050)
Q Consensus 694 e~~~ivG~~GaGKSTll~~l~g~ 716 (1050)
=++.++|..|+|||||++-+.+-
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 79999998997899999999719
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.41 E-value=0.5 Score=20.49 Aligned_cols=27 Identities=15% Similarity=0.227 Sum_probs=14.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 999995999828999999973989998
Q 001580 72 LVAIVGGTGEGKTSLISAMLGELPPVS 98 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~~~~~ 98 (1050)
.++++|..|+|||||++-+.....|+.
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~ 30 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGT 30 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCC
T ss_conf 999999999888999998840897972
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.33 E-value=0.43 Score=20.96 Aligned_cols=22 Identities=41% Similarity=0.572 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979999988999998404
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRI 716 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~ 716 (1050)
++.++|..|+|||||++.+.+-
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990889999999719
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=85.31 E-value=0.19 Score=23.60 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=19.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 969999979999988999998404
Q 001580 693 SDKVGIVGRTGAGKSSMLNTLFRI 716 (1050)
Q Consensus 693 Ge~~~ivG~~GaGKSTll~~l~g~ 716 (1050)
-=++.++|+.|+|||||++.+.+-
T Consensus 17 ~~KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 17 ELRILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 689999999999889999887338
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.28 E-value=0.23 Score=23.04 Aligned_cols=54 Identities=20% Similarity=0.266 Sum_probs=35.3
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEECCCCCHHHHHHHEEE
Q ss_conf 96399699999799999889999984046688628-9998960689895887521278
Q 001580 689 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR-ILIDGFDIAKFGLMDLRKILGI 745 (1050)
Q Consensus 689 ~i~~Ge~~~ivG~~GaGKSTll~~l~g~~~p~~G~-i~~~g~~~~~~~~~~~r~~i~~ 745 (1050)
-++.|.++-+.|++|+||||+.-.+........|. |++|... .+++..+ +.+|+
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~--~~~~e~a-~~~Gv 110 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH--ALDPDYA-KKLGV 110 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC--CCCHHHH-HHHTC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC--CCCHHHH-HHHCC
T ss_conf 8666336999648874889999999998754898899998976--6799999-98099
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.27 E-value=0.38 Score=21.35 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979999988999998404
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRI 716 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~ 716 (1050)
++.|+|+.|+|||||++-+.+-
T Consensus 8 KivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999619
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.20 E-value=0.24 Score=22.84 Aligned_cols=22 Identities=45% Similarity=0.567 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599982899999997398
Q 001580 73 VAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 73 valvG~nGSGKSTLl~~L~G~~ 94 (1050)
+.+.||+|+||||++++++.++
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=85.12 E-value=0.33 Score=21.79 Aligned_cols=21 Identities=38% Similarity=0.531 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999998899999840
Q 001580 695 KVGIVGRTGAGKSSMLNTLFR 715 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g 715 (1050)
++.++|..|+|||||++-+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899588999999972
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.12 E-value=0.4 Score=21.21 Aligned_cols=22 Identities=23% Similarity=0.446 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979999988999998404
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRI 716 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~ 716 (1050)
++.++|..|+|||||++-+.+-
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990989999999849
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.09 E-value=0.61 Score=19.84 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=12.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999828999999973
Q 001580 72 LVAIVGGTGEGKTSLISAMLG 92 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G 92 (1050)
.++++|..|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999598999999972
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=84.94 E-value=0.32 Score=21.92 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99999599982899999997398999
Q 001580 72 LVAIVGGTGEGKTSLISAMLGELPPV 97 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~~~~ 97 (1050)
+++|-|.-||||||+++.|.-.+...
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~~ 32 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAIT 32 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 99998887788999999999987346
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.93 E-value=0.34 Score=21.69 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=14.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999828999999973
Q 001580 72 LVAIVGGTGEGKTSLISAMLG 92 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G 92 (1050)
.++++|..|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=84.78 E-value=0.47 Score=20.70 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7999995999828999999973989
Q 001580 71 SLVAIVGGTGEGKTSLISAMLGELP 95 (1050)
Q Consensus 71 e~valvG~nGSGKSTLl~~L~G~~~ 95 (1050)
-.++|||...+|||||+++|++.-.
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~~~ 35 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKSVL 35 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHSTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 3799978999989999999977898
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.74 E-value=0.36 Score=21.58 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=15.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998289999999739
Q 001580 72 LVAIVGGTGEGKTSLISAMLGE 93 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~ 93 (1050)
.++++|..|+|||||++-+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999998998999999999709
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=84.70 E-value=0.31 Score=22.03 Aligned_cols=111 Identities=13% Similarity=0.204 Sum_probs=55.9
Q ss_pred EEEEECCCCCCHHHHHHHHH---CCCCCCCCCEEEEECCEEEEECCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCHH
Q ss_conf 99999599982899999997---398999887067709289992478787634899861499999889999999809378
Q 001580 72 LVAIVGGTGEGKTSLISAML---GELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 148 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~---G~~~~~~G~~~~~~~~Ig~v~Q~~~L~~~TV~enI~~g~~~~~~~~~~~~~~~~L~~ 148 (1050)
-++|+|+.|||||||...|+ |..... |.+.......=|.|++-- -.-||.-.+.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~-g~v~~~~~~~D~~~~E~~-r~~si~~~~~--------------------- 64 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHKI-GEVHEGAATMDFMEQERE-RGITITAAVT--------------------- 64 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC---------------------CCCCCCCSEE---------------------
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCCCC-CCEECCCEEEECCHHHHH-CCCCCCCCEE---------------------
T ss_conf 99999589899899999999964853402-336518469856588875-1886001123---------------------
Q ss_pred HHHCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCC
Q ss_conf 984099999631257998-77978999999999870299899993978885989999999999700
Q 001580 149 DLDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG 213 (1050)
Q Consensus 149 ~i~~l~~g~~t~ig~~g~-~LSGGQKqRiaLARAL~~~~~IllLDEpts~LD~~s~~~i~~~ll~~ 213 (1050)
--.|.+...+.++-.|. ..+|--..-++.+ +.-|+++| +..++.+.++ .+|+.+.+.
T Consensus 65 -~~~~~~~~~n~iDtPG~~dF~~e~~~~l~~~-----D~avlVvd-a~~Gv~~~T~-~~w~~a~~~ 122 (276)
T d2bv3a2 65 -TCFWKDHRINIIDAPGHVDFTIEVERSMRVL-----DGAIVVFD-SSQGVEPQSE-TVWRQAEKY 122 (276)
T ss_dssp -EEEETTEEEEEECCCSSSSCSTTHHHHHHHC-----CEEEEEEE-TTTSSCHHHH-HHHHHHHTT
T ss_pred -EECCCCEEEEEECCCCHHHHHHHHHHHHHHH-----HHEEEECC-CCCCCCHHHH-HHHHHHHHC
T ss_conf -4315983899952786022699999999963-----00577322-5677446699-999999985
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.62 E-value=0.43 Score=20.94 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979999988999998404
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRI 716 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~ 716 (1050)
++.++|.+|+|||||++.+.+-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993889999999719
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.60 E-value=0.37 Score=21.46 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999998899999840
Q 001580 695 KVGIVGRTGAGKSSMLNTLFR 715 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g 715 (1050)
++.++|..|+|||||++-+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999974
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.59 E-value=0.19 Score=23.54 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=14.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999828999999973
Q 001580 72 LVAIVGGTGEGKTSLISAMLG 92 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G 92 (1050)
.++++|..|+|||||++.+.+
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999088999999984
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.54 E-value=0.43 Score=20.96 Aligned_cols=32 Identities=22% Similarity=0.388 Sum_probs=26.4
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 88609979999959998289999999739899
Q 001580 65 LDIPVGSLVAIVGGTGEGKTSLISAMLGELPP 96 (1050)
Q Consensus 65 L~i~~Ge~valvG~nGSGKSTLl~~L~G~~~~ 96 (1050)
=-++.|.++.+.|++||||||++-.++.....
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~ 86 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQA 86 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 98666336999648874889999999998754
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.54 E-value=0.35 Score=21.66 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=14.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999828999999973
Q 001580 72 LVAIVGGTGEGKTSLISAMLG 92 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G 92 (1050)
.++|+|..|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999899999999964
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=84.53 E-value=0.34 Score=21.77 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979999988999998404
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRI 716 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~ 716 (1050)
.++|+|+.++|||||+..|+..
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999947898499999999998
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.49 E-value=0.53 Score=20.29 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999998899999840
Q 001580 695 KVGIVGRTGAGKSSMLNTLFR 715 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g 715 (1050)
++.++|..|+|||||++-+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999398999999982
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.49 E-value=0.39 Score=21.33 Aligned_cols=21 Identities=43% Similarity=0.681 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999998899999840
Q 001580 695 KVGIVGRTGAGKSSMLNTLFR 715 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g 715 (1050)
++.++|..|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899499999999973
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=84.36 E-value=0.34 Score=21.72 Aligned_cols=20 Identities=35% Similarity=0.549 Sum_probs=10.0
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99995999828999999973
Q 001580 73 VAIVGGTGEGKTSLISAMLG 92 (1050)
Q Consensus 73 valvG~nGSGKSTLl~~L~G 92 (1050)
+|++|+..+|||||++.|++
T Consensus 6 i~iiGHvd~GKSTL~~~l~~ 25 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITK 25 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99995889809999999999
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.35 E-value=0.51 Score=20.44 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979999988999998404
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRI 716 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~ 716 (1050)
++.++|..|+|||||++-+..-
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999859
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.30 E-value=0.51 Score=20.41 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979999988999998404
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRI 716 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~ 716 (1050)
++.++|..|+|||||++-+.+-
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.03 E-value=0.4 Score=21.23 Aligned_cols=21 Identities=29% Similarity=0.629 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999998899999840
Q 001580 695 KVGIVGRTGAGKSSMLNTLFR 715 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g 715 (1050)
++.++|..|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999598999999972
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.93 E-value=0.38 Score=21.35 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=32.6
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHH
Q ss_conf 9989998466748899989999999998738948998505810365
Q 001580 820 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTII 865 (1050)
Q Consensus 820 ~p~illLDEpts~lD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~ 865 (1050)
+.+++++||.- .+.......+...+.+..+...++++++....+.
T Consensus 99 ~~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i~ 143 (227)
T d1sxjc2 99 GFKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAHKLT 143 (227)
T ss_dssp SCEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSC
T ss_pred CEEEEEEECCC-CCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHH
T ss_conf 71899996632-0002378999988631120023201267087759
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=83.86 E-value=0.42 Score=21.05 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=22.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 79999959998289999999739899
Q 001580 71 SLVAIVGGTGEGKTSLISAMLGELPP 96 (1050)
Q Consensus 71 e~valvG~nGSGKSTLl~~L~G~~~~ 96 (1050)
-.++|||-.-+|||||+++|++--.+
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~~~~ 28 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKAGIE 28 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC--
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 34888899999889999999779974
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.86 E-value=0.5 Score=20.46 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979999988999998404
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRI 716 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~ 716 (1050)
++.++|..|+|||||++-+..-
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997996989999999739
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=83.71 E-value=0.57 Score=20.06 Aligned_cols=32 Identities=16% Similarity=0.162 Sum_probs=25.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 99999799999889999984046688628999
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIVELERGRILI 726 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~~p~~G~i~~ 726 (1050)
+|.|=|+-|+||||+++.|...+....+.+.+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~ 39 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF 39 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 99998886678999999999986569976998
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=83.68 E-value=0.26 Score=22.63 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=17.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599982899999997398
Q 001580 72 LVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
.++++|.+|+|||||++.+.+..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999987899999984488
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=83.60 E-value=0.74 Score=19.22 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=24.5
Q ss_pred CCEEECEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 83110008860997999995999828999999973
Q 001580 58 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG 92 (1050)
Q Consensus 58 ~~L~~isL~i~~Ge~valvG~nGSGKSTLl~~L~G 92 (1050)
..++..-+ .-.|.=+.+.|++|+||||+.-.+..
T Consensus 3 ~~lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 3 RSMHGVLV-DIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEEEE-EETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEEE-EECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 32899999-99999999980899998999999998
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.31 E-value=0.41 Score=21.12 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=10.2
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99995999828999999973
Q 001580 73 VAIVGGTGEGKTSLISAMLG 92 (1050)
Q Consensus 73 valvG~nGSGKSTLl~~L~G 92 (1050)
++++|..|+|||||++-+.+
T Consensus 6 vvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999699999999971
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.30 E-value=0.45 Score=20.81 Aligned_cols=19 Identities=21% Similarity=0.555 Sum_probs=13.2
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 9999959998289999999
Q 001580 72 LVAIVGGTGEGKTSLISAM 90 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L 90 (1050)
.+.++|.+|+|||||++-+
T Consensus 4 KivllG~~~vGKTsll~r~ 22 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQM 22 (200)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 9999989999989999988
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.29 E-value=0.4 Score=21.22 Aligned_cols=21 Identities=33% Similarity=0.687 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999998899999840
Q 001580 695 KVGIVGRTGAGKSSMLNTLFR 715 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g 715 (1050)
++.++|..|+|||||++-+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999099999999970
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=83.26 E-value=0.58 Score=20.01 Aligned_cols=26 Identities=23% Similarity=0.519 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 96999997999998899999840466
Q 001580 693 SDKVGIVGRTGAGKSSMLNTLFRIVE 718 (1050)
Q Consensus 693 Ge~~~ivG~~GaGKSTll~~l~g~~~ 718 (1050)
.=.+||+|...+|||||+..|+|...
T Consensus 8 ~ini~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 8 EVNIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 70899997248869999999970412
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=83.14 E-value=0.35 Score=21.62 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99995999828999999973989
Q 001580 73 VAIVGGTGEGKTSLISAMLGELP 95 (1050)
Q Consensus 73 valvG~nGSGKSTLl~~L~G~~~ 95 (1050)
+.+.||.|+||||+++++++++.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89889799878889999999849
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=83.12 E-value=0.47 Score=20.69 Aligned_cols=22 Identities=27% Similarity=0.527 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599982899999997398
Q 001580 73 VAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 73 valvG~nGSGKSTLl~~L~G~~ 94 (1050)
++++|+..+|||||++.|+...
T Consensus 12 i~viGHVd~GKSTL~~~Ll~~~ 33 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLHDS 33 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999378989899999999986
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.10 E-value=0.47 Score=20.71 Aligned_cols=21 Identities=38% Similarity=0.604 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999998899999840
Q 001580 695 KVGIVGRTGAGKSSMLNTLFR 715 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g 715 (1050)
++.++|+.|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=83.03 E-value=0.47 Score=20.71 Aligned_cols=32 Identities=22% Similarity=0.454 Sum_probs=25.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 99999799999889999984046688628999
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIVELERGRILI 726 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~~p~~G~i~~ 726 (1050)
+|.|=|+-|+||||+++.|...+......+.+
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~ 38 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRILL 38 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTSGGGEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99998887788999999999987346885699
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=82.73 E-value=0.43 Score=20.96 Aligned_cols=18 Identities=28% Similarity=0.599 Sum_probs=8.6
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999979999988999998
Q 001580 696 VGIVGRTGAGKSSMLNTL 713 (1050)
Q Consensus 696 ~~ivG~~GaGKSTll~~l 713 (1050)
++++|..++|||||+..|
T Consensus 6 i~viGHVd~GKTTL~~~L 23 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRL 23 (224)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHH
T ss_conf 999944799999999999
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=82.72 E-value=0.4 Score=21.24 Aligned_cols=43 Identities=9% Similarity=0.116 Sum_probs=26.4
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHH
Q ss_conf 998999846674889998999999999873-8948998505810365
Q 001580 820 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTII 865 (1050)
Q Consensus 820 ~p~illLDEpts~lD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~ 865 (1050)
.|-++++||..+-..... +.+.+.+.+ .|..+++++..+..+.
T Consensus 276 ~~v~l~lDE~~~~~~~~~---l~~~l~~~Rk~Gv~~~l~~Qs~~ql~ 319 (433)
T d1e9ra_ 276 RRLWLFIDELASLEKLAS---LADALTKGRKAGLRVVAGLQSTSQLD 319 (433)
T ss_dssp CCEEEEESCGGGSCBCSS---HHHHHHHCTTTTEEEEEEESCHHHHH
T ss_pred CCEEEEECHHHHHCCCHH---HHHHHHHHCCCCCEEEEEECCHHHHH
T ss_conf 854998353755256087---99999984789915999936488999
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.69 E-value=0.41 Score=21.14 Aligned_cols=30 Identities=27% Similarity=0.410 Sum_probs=25.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 999997999998899999840466886289
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIVELERGRI 724 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~~p~~G~i 724 (1050)
++.++|..|+|||||++-+.....|+.|-.
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCEE
T ss_conf 999999999888999998840897972479
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.68 E-value=0.42 Score=21.06 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=22.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7999995999828999999973989
Q 001580 71 SLVAIVGGTGEGKTSLISAMLGELP 95 (1050)
Q Consensus 71 e~valvG~nGSGKSTLl~~L~G~~~ 95 (1050)
.++++-|.-||||||+++.|.-.+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 1999989988859999999999873
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=82.60 E-value=0.58 Score=19.98 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99997999998899999840466
Q 001580 696 VGIVGRTGAGKSSMLNTLFRIVE 718 (1050)
Q Consensus 696 ~~ivG~~GaGKSTll~~l~g~~~ 718 (1050)
+-+.||.|+|||++++.+...+.
T Consensus 45 iLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 88766898883599999998739
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=82.57 E-value=0.32 Score=21.92 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=23.1
Q ss_pred CEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 00886099799999599982899999997398
Q 001580 63 INLDIPVGSLVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 63 isL~i~~Ge~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
.=+.+-+||+++|.|+.|+|||+|+..+.--.
T Consensus 60 ~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~ 91 (276)
T d1fx0a3 60 AMIPVGRGQRELIIGDRQTGKTAVATDTILNQ 91 (276)
T ss_dssp TTSCCBTTCBCBEEESSSSSHHHHHHHHHHTC
T ss_pred CCCCCCCCCEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 01454677667600677888579999977654
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=82.53 E-value=0.7 Score=19.37 Aligned_cols=25 Identities=32% Similarity=0.223 Sum_probs=16.8
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 6399699999799999889999984
Q 001580 690 IPPSDKVGIVGRTGAGKSSMLNTLF 714 (1050)
Q Consensus 690 i~~Ge~~~ivG~~GaGKSTll~~l~ 714 (1050)
.-.|.-+.|.|++|+||||+.-.|.
T Consensus 12 ~~~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 12 DVYGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred EECCEEEEEEECCCCCHHHHHHHHH
T ss_conf 9999999998089999999999999
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=82.36 E-value=0.31 Score=22.07 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=20.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999997999998899999840466
Q 001580 694 DKVGIVGRTGAGKSSMLNTLFRIVE 718 (1050)
Q Consensus 694 e~~~ivG~~GaGKSTll~~l~g~~~ 718 (1050)
=++.++|+.|+|||||++.+..-..
T Consensus 13 ~kIvlvG~~~vGKTSli~rl~~~~~ 37 (173)
T d1e0sa_ 13 MRILMLGLDAAGKTTILYKLKLGQS 37 (173)
T ss_dssp EEEEEEEETTSSHHHHHHHTTCCCC
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7999999999878999999844888
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=82.19 E-value=0.21 Score=23.25 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=12.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999828999999973989
Q 001580 72 LVAIVGGTGEGKTSLISAMLGELP 95 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~~ 95 (1050)
-+.|+|+.|+||||+++.+.+.++
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp 53 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLP 53 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 089988998529999999987379
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.17 E-value=0.48 Score=20.58 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999997999998899999840466
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIVE 718 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~~ 718 (1050)
-+-+.||.|+|||++++.+.....
T Consensus 40 giLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 468766998883089999998748
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.14 E-value=0.31 Score=22.05 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999998899999840
Q 001580 695 KVGIVGRTGAGKSSMLNTLFR 715 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g 715 (1050)
++.++|..|+|||||++.+..
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999088999999984
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=82.13 E-value=0.49 Score=20.53 Aligned_cols=32 Identities=31% Similarity=0.503 Sum_probs=27.7
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 86099799999599982899999997398999
Q 001580 66 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPV 97 (1050)
Q Consensus 66 ~i~~Ge~valvG~nGSGKSTLl~~L~G~~~~~ 97 (1050)
-++.|.++-+.|++||||||++..++......
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~ 84 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKA 84 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 86675478980587652279999999999707
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.08 E-value=0.48 Score=20.59 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999998899999840
Q 001580 695 KVGIVGRTGAGKSSMLNTLFR 715 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g 715 (1050)
++.|+|..|+|||||++-+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999899999999964
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=81.92 E-value=0.88 Score=18.63 Aligned_cols=20 Identities=20% Similarity=0.149 Sum_probs=12.1
Q ss_pred CCCCEEEEECCCCCCHHHHH
Q ss_conf 39969999979999988999
Q 001580 691 PPSDKVGIVGRTGAGKSSML 710 (1050)
Q Consensus 691 ~~Ge~~~ivG~~GaGKSTll 710 (1050)
++|+.+-|..|+|||||...
T Consensus 5 ~~~~~~il~~~tGsGKT~~~ 24 (140)
T d1yksa1 5 KKGMTTVLDFHPGAGKTRRF 24 (140)
T ss_dssp STTCEEEECCCTTSSTTTTH
T ss_pred HCCCCEEEECCCCCCHHHHH
T ss_conf 75996799817998855999
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=81.62 E-value=0.49 Score=20.52 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999828999999973989
Q 001580 72 LVAIVGGTGEGKTSLISAMLGELP 95 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~~ 95 (1050)
-+.+.||.|||||+++++|+.+..
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 799889699988999999862010
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.60 E-value=0.57 Score=20.06 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHH--CCCCCCCC
Q ss_conf 99999799999889999984--04668862
Q 001580 695 KVGIVGRTGAGKSSMLNTLF--RIVELERG 722 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~--g~~~p~~G 722 (1050)
++.++|..|+|||||++-+. -.+.|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEE
T ss_conf 999998999998999998846898887241
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| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=81.54 E-value=0.52 Score=20.36 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=18.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 7999995999828999999973
Q 001580 71 SLVAIVGGTGEGKTSLISAMLG 92 (1050)
Q Consensus 71 e~valvG~nGSGKSTLl~~L~G 92 (1050)
..+.|+|++|||||+++..++-
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~ 72 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAY 72 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHH
T ss_conf 6589990799968999999999
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| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.28 E-value=0.33 Score=21.79 Aligned_cols=21 Identities=29% Similarity=0.545 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999998899999840
Q 001580 695 KVGIVGRTGAGKSSMLNTLFR 715 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g 715 (1050)
++.++|..|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999499999999970
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| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=81.07 E-value=0.94 Score=18.43 Aligned_cols=33 Identities=27% Similarity=0.279 Sum_probs=24.2
Q ss_pred CEEECEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3110008860997999995999828999999973
Q 001580 59 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG 92 (1050)
Q Consensus 59 ~L~~isL~i~~Ge~valvG~nGSGKSTLl~~L~G 92 (1050)
.++. ++-.-.|.=+.+.|++|+||||+.-.+.-
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 4889-99999999999980899999999999998
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| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=80.89 E-value=0.34 Score=21.75 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999997999998899999840466
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIVE 718 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~~ 718 (1050)
.+.+.||.|+||||+++.+...+.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899678999899999999999987
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| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=80.88 E-value=0.55 Score=20.16 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999997999998899999840466
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRIVE 718 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~~~ 718 (1050)
.+.++||+|+|||.|.+.|...+.
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHHHCC
T ss_conf 899977875006999999986336
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| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.79 E-value=0.75 Score=19.17 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999998899999840
Q 001580 695 KVGIVGRTGAGKSSMLNTLFR 715 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g 715 (1050)
++.++|..|+|||||++-+..
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999699999999971
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| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=80.73 E-value=0.5 Score=20.47 Aligned_cols=25 Identities=28% Similarity=0.222 Sum_probs=20.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7999995999828999999973989
Q 001580 71 SLVAIVGGTGEGKTSLISAMLGELP 95 (1050)
Q Consensus 71 e~valvG~nGSGKSTLl~~L~G~~~ 95 (1050)
-.++|-|.-||||||+++.|...+.
T Consensus 5 lrI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 5 LRVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2999989867789999999999817
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| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.65 E-value=0.86 Score=18.72 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979999988999998404
Q 001580 695 KVGIVGRTGAGKSSMLNTLFRI 716 (1050)
Q Consensus 695 ~~~ivG~~GaGKSTll~~l~g~ 716 (1050)
++.++|..|+|||||++-+..-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999998998999999999709
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| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=80.37 E-value=0.73 Score=19.26 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599982899999997398
Q 001580 72 LVAIVGGTGEGKTSLISAMLGEL 94 (1050)
Q Consensus 72 ~valvG~nGSGKSTLl~~L~G~~ 94 (1050)
.+.++||+|+|||.|.+.|+-.+
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHC
T ss_conf 89997787500699999998633
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| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.18 E-value=0.5 Score=20.51 Aligned_cols=23 Identities=35% Similarity=0.457 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99995999828999999973989
Q 001580 73 VAIVGGTGEGKTSLISAMLGELP 95 (1050)
Q Consensus 73 valvG~nGSGKSTLl~~L~G~~~ 95 (1050)
+.+.||+|+||||++++++.++.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99988999870546999999972
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