Citrus Sinensis ID: 001583

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------105
MATTKPQRSPEEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDRLSGNFPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGIDGFGNSTSSGSQCPPGFLKEFFEEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQGQTPSSQLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKMPLPDTCPMEFACMPEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIGEDGRIIQEFIELGAKAKAAASEAMDAEAALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFIKSQGLKRHGEGLNIQSIKDTIQTTNGDMLID
cccccccccHHHHHHHHHHHHHHEEccccccccccccEEHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHccccccccccccHHHHHHHHccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccHHHHHHHHcccccccccccccHHHHHHHccccccccccccccccccccccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcHHHHHHcccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHccccEEcccccEEEEHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccc
cccccccccHHHHHHHHHHHHHHEEcccccccccccEEEcHHHHHHHHHccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHccccccccccccccccccccccHHHHHHHHHHccccHccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccHHHHHHHHHccccccccccccccHEEEEcccccEEEEcccccccccccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccccccccEcccccHHcccccccccccccEEcccHHHHHHHHHHHccccccccccccccccEEccccHccccccccccccccccccHccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHccHHHHHHHHHHHHHHHHccHHccccccHHHHHHHHHHHccHHHcccHHHHHHHHHHHHHHccccccccccHHHHHcccHHHHHHHHHHHHHHEEEHHccccccHHHHHcccHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccEcccHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcHHHHHHccccEEcccccEEEcHHHHHHHHHcccccccccccccHHHccccHHHHHHHHHHHHHHHHHHHcccccccccHHHccccccccccc
mattkpqrspeEIEDIILRKIFLVTLneattdadprIAYLELTAAELLSEGKDMRLSRDLMERVLVDrlsgnfpaaeppflyLINCYRRAHDELKKignmkdknLRSELEAVVKQAKKMIVSYCRIhlanpdffgsnndnnyeinnsnnkssispllpFIFAevgggidgfgnstssgsqcppgflkeffeeadfdtldPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVKslvnhqwwipksvylnGRVIEmtsilgpffhvsalpdhaifksqpdvgqqcfseastrrpadllsSFTTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINrnssrahiqveplscassgmfVNLSAVMLRLCdpfldanltkrdkidpkyvfyssrldlrsLTALHASSEEVSEWInkgnpakadgskhfsdgENQLLQsqeatsssggasepslpagrpasigggkskypfiCECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKatqgqtpssqlnLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVggfkmplpdtcpmefacmpehFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMaspkyirnpylRSKMVEVLncwmprrsgsssatatLFEGHQMSLEYLVRNLLKLYVDieftgshtqfydKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNtaewerrpaQERQERTRLFHSQENIIRIDMKLANEDVSmlaftseqivapflLPEMIERVASMLNYFLLQLvgpqrksltlkdpekyefrpkQLLKQIVCIYVHLargdtqnlfpaaissdgrsyNEQLFSAAADVLWKIGEDGRIIQEFIELGAKAKAAASEAMDAEaalgdipdefldpiqytlmkdpvilpssritvdrpviqrhllsdatdpfnrshltadmlipntELKAKIEEFIKSQglkrhgeglniQSIKDTIqttngdmlid
mattkpqrspeeiEDIILRKIFLVTLNeattdadprIAYLELTAAELlsegkdmrlsRDLMERVLVDRlsgnfpaaeppfLYLINCYRRAHDELKKignmkdknlrSELEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGIDGFGNSTSSGSQCPPGFLKEFFEEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSeastrrpadllsSFTTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDanltkrdkidpkYVFYSSRLDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATsssggasepslpAGRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLkatqgqtpssqlnlEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKMPLPDTCPMEFACMPEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEmsntaewerrpaqerqertrlfhsqeniIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVgpqrksltlkdpEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIGEDGRIIQEFIELGAKAKAAASEAMDAEAALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLlsdatdpfnrsHLTADMLIPNTELKAKIEEFIKSQglkrhgeglniqsikdtiqttngdmlid
MATTKPQRSPEEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDRLSGNFPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIHLANPDFFGsnndnnyeinnsnnkssisPLLPFIFAEVGGGIDGFGNSTSSGSQCPPGFLKEFFEEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQGQTPSSQLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKMPLPDTCPMEFACMPEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIGEDGRIIQEFIELGakakaaaseamdaeaaLGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFIKSQGLKRHGEGLNIQSIKDTIQTTNGDMLID
*************EDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDRLSGNFPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIHLANPDFFGSNN***Y**********ISPLLPFIFAEVGGGIDGFGN*******CPPGFLKEFFEEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCF********ADLLSSFTTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALH**************************************************************KYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTL*****************EITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKMPLPDTCPMEFACMPEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPR*******TATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEA**********************FHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIGEDGRIIQEFIELGAKAKAA*****DAEAALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFIK******************************
***********EIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDRLSGNFPAAEPPFLYLINCYRRAHD*****************EAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGIDGFGNSTSSGSQCPPGFLKEFFEEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFS**************TTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALHASSEEVSEWINKGN*************************************************YPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRAE**********************TRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKMPLPDTCPMEFACMPEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILEL************************************IDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWK********Q*FIELG******************DIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFI**************************DMLID
**********EEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDRLSGNFPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGIDGFGNSTSSGSQCPPGFLKEFFEEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLL*******************GRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQGQTPSSQLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKMPLPDTCPMEFACMPEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIGEDGRIIQEFIELGA***********AEAALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFIKSQGLKRHGEGLNIQSIKDTIQTTNGDMLID
*******RSPEEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDRLSGNFPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGIDGFGNSTSSGSQCPPGFLKEFFEEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALHASSEEVSEWINKGNP******KH*S*******Q***A*****GASEPS***********GKSKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQGQTPSSQLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKMPLPDTCPMEFACMPEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIGEDGRIIQEFIELGAKAKAAASEAMDAEAALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFIKSQGLK*************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MATTKPQRSPEEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDRLSGNFPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGIDGFGNSTSSGSQCPPGFLKEFFEEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQGQTPxxxxxxxxxxxxxxxxxxxxxKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKMPLPDTCPMEFACMPEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIGEDGRIIQEFIELGAKAKAAASEAMDAEAALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFIKSQGLKRHGEGLNIQSIKDTIQTTNGDMLID
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1049 2.2.26 [Sep-21-2011]
Q9LF411038 Probable ubiquitin conjug yes no 0.988 0.999 0.774 0.0
Q9HE051010 Ubiquitin conjugation fac yes no 0.844 0.877 0.284 5e-98
Q9ES001173 Ubiquitin conjugation fac yes no 0.737 0.659 0.304 1e-97
O951551302 Ubiquitin conjugation fac no no 0.737 0.594 0.311 2e-97
Q5R9G31066 Ubiquitin conjugation fac yes no 0.855 0.841 0.284 5e-90
Q141391066 Ubiquitin conjugation fac no no 0.855 0.841 0.284 8e-90
A5PKG61067 Ubiquitin conjugation fac no no 0.852 0.837 0.280 3e-89
Q6P7A21066 Ubiquitin conjugation fac no no 0.856 0.842 0.283 2e-88
P54860961 E4 ubiquitin-protein liga yes no 0.861 0.940 0.271 3e-80
Q09349980 Probable ubiquitin conjug yes no 0.714 0.765 0.250 3e-59
>sp|Q9LF41|UBE4_ARATH Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana GN=PUB1 PE=1 SV=1 Back     alignment and function desciption
 Score = 1657 bits (4292), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 813/1050 (77%), Positives = 919/1050 (87%), Gaps = 13/1050 (1%)

Query: 1    MATTKPQRSPEEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDL 60
            MAT+KPQRSP EIEDIILRKIF VTL E +TD+DPRI YLE+TAAE+LSEGK++ LSRDL
Sbjct: 1    MATSKPQRSPAEIEDIILRKIFYVTLTE-STDSDPRIVYLEMTAAEILSEGKELLLSRDL 59

Query: 61   MERVLVDRLSGNFPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMI 120
            MERVL+DRLSG+F  AEPPF YLI C+RRA+DE KKI +MKDKNLRSE+E V KQAKK+ 
Sbjct: 60   MERVLIDRLSGDFSDAEPPFPYLIGCHRRAYDESKKIQSMKDKNLRSEMEIVTKQAKKLA 119

Query: 121  VSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGG-IDGFGNSTSSGS 179
            VSYCRIHL NPD FG+++  +  ++N   K ++SP+LP IFAEVG G +D FG ++SSG 
Sbjct: 120  VSYCRIHLGNPDMFGNSDKPSGGLDNRLKKRNVSPVLPLIFAEVGSGSLDMFG-ASSSGV 178

Query: 180  QCPPGFLKEFFEEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGV 239
            Q PPGFL EFF+++DFD+LD ILK LYE+LR +V+NVS LG+FQ PLRAL YLVS PVG 
Sbjct: 179  QAPPGFLDEFFKDSDFDSLDSILKELYEDLRSTVINVSVLGDFQPPLRALKYLVSLPVGA 238

Query: 240  KSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRR 299
            KSLV+H+WW+P+  Y+NGR +E+TSILGPFFH+SALPD+ +FKSQPDVGQQCFSEAS RR
Sbjct: 239  KSLVSHEWWVPRGAYMNGRAMELTSILGPFFHISALPDNTLFKSQPDVGQQCFSEASERR 298

Query: 300  PADLLSSFTTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRAHIQVEP 359
            PADLLSSF+TIK  M  LY  L DVL+ LLK+TDTRE VL++LAEVIN N+SRAHIQV+P
Sbjct: 299  PADLLSSFSTIKNFMNILYSGLHDVLMILLKSTDTRERVLQFLAEVINANASRAHIQVDP 358

Query: 360  LSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALHASSEEV 419
            +SCASSGMFVNLSAVMLRLC+PFLD +LTKRDKIDPKY F   RL L  LTALHASSEEV
Sbjct: 359  VSCASSGMFVNLSAVMLRLCEPFLDPHLTKRDKIDPKYAFCGHRLKLSDLTALHASSEEV 418

Query: 420  SEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPF 479
            +EWI K   A A+ +   +  E++LLQS+EATSSS  AS      G+ A      +KY F
Sbjct: 419  TEWIGKDAMANANDAGRENGNESRLLQSKEATSSSSNAS------GQNAK---SATKYTF 469

Query: 480  ICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQGQTPSSQLNLEITRIE 539
            ICECFFMTARVLNLGLLKA SDFKHL QDISR ED LATLKA + Q PS QL L+I+R+E
Sbjct: 470  ICECFFMTARVLNLGLLKALSDFKHLAQDISRGEDNLATLKAMRDQAPSPQLELDISRME 529

Query: 540  KEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKMPLPDTCPMEFACM 599
            KE+ELSSQEKLC+EAQILRDGD IQ ALSFYRLM+VWLV LVGGFKMPLP TCPMEF+CM
Sbjct: 530  KELELSSQEKLCHEAQILRDGDFIQRALSFYRLMVVWLVGLVGGFKMPLPSTCPMEFSCM 589

Query: 600  PEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCW 659
            PEHFVEDAMELLIFASRIPKALDGV LDDFMNFIIMFMASP+Y+RNPYLR+KMVEVLNCW
Sbjct: 590  PEHFVEDAMELLIFASRIPKALDGVPLDDFMNFIIMFMASPEYVRNPYLRAKMVEVLNCW 649

Query: 660  MPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLE 719
            MPR S SSSAT+TLFEGHQ+SLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLE
Sbjct: 650  MPRSSSSSSATSTLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLE 709

Query: 720  YLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTA 779
            YLWQVPSHRNAWR+IAK+EEKGVYLNFLNFL+NDSIYLLDESLNKILE+K IEA+MSNTA
Sbjct: 710  YLWQVPSHRNAWRRIAKDEEKGVYLNFLNFLVNDSIYLLDESLNKILEIKQIEADMSNTA 769

Query: 780  EWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVAS 839
            EWE+RP QERQERTRLFHSQENI+RIDMKLANEDV+MLAFTSE+I APFLLPEM+ERVA+
Sbjct: 770  EWEQRPTQERQERTRLFHSQENIVRIDMKLANEDVTMLAFTSEEITAPFLLPEMVERVAN 829

Query: 840  MLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDG 899
            MLNYFLLQLVGPQRKSL+LKDPEKYEFRPKQLLKQIV IYV+LARGDT N+FP AISSDG
Sbjct: 830  MLNYFLLQLVGPQRKSLSLKDPEKYEFRPKQLLKQIVRIYVNLARGDTVNIFPGAISSDG 889

Query: 900  RSYNEQLFSAAADVLWKIGEDGRIIQEFIELGAKAKAAASEAMDAEAALGDIPDEFLDPI 959
            RSYNEQLF+A ADVL +IGE+GRIIQEF+ELG KAKAAASEA+DAEAALG+IPDEFLDPI
Sbjct: 890  RSYNEQLFNAGADVLRRIGEEGRIIQEFMELGTKAKAAASEALDAEAALGEIPDEFLDPI 949

Query: 960  QYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFIK 1019
            QYTLM+DPVILPSSRITVDRP+IQRHLLSD  DPFNR+HLT+DMLIP+ ELKAKI+EF+K
Sbjct: 950  QYTLMRDPVILPSSRITVDRPIIQRHLLSDNHDPFNRAHLTSDMLIPDIELKAKIDEFVK 1009

Query: 1020 SQGLKRHGEGLNIQSIKDTIQTTNGDMLID 1049
            S   K+   G +  S K+ IQTTN DMLID
Sbjct: 1010 SHQSKKRTSGED-SSNKERIQTTNSDMLID 1038

Arabidopsis thaliana (taxid: 3702)
>sp|Q9HE05|UFD2_SCHPO Ubiquitin conjugation factor E4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ufd2 PE=2 SV=1 Back     alignment and function description
>sp|Q9ES00|UBE4B_MOUSE Ubiquitin conjugation factor E4 B OS=Mus musculus GN=Ube4b PE=1 SV=3 Back     alignment and function description
>sp|O95155|UBE4B_HUMAN Ubiquitin conjugation factor E4 B OS=Homo sapiens GN=UBE4B PE=1 SV=1 Back     alignment and function description
>sp|Q5R9G3|UBE4A_PONAB Ubiquitin conjugation factor E4 A OS=Pongo abelii GN=UBE4A PE=2 SV=2 Back     alignment and function description
>sp|Q14139|UBE4A_HUMAN Ubiquitin conjugation factor E4 A OS=Homo sapiens GN=UBE4A PE=1 SV=2 Back     alignment and function description
>sp|A5PKG6|UBE4A_BOVIN Ubiquitin conjugation factor E4 A OS=Bos taurus GN=UBE4A PE=2 SV=1 Back     alignment and function description
>sp|Q6P7A2|UBE4A_RAT Ubiquitin conjugation factor E4 A OS=Rattus norvegicus GN=Ube4a PE=2 SV=1 Back     alignment and function description
>sp|P54860|UFD2_YEAST E4 ubiquitin-protein ligase UFD2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UFD2 PE=1 SV=3 Back     alignment and function description
>sp|Q09349|UBE4_CAEEL Probable ubiquitin conjugation factor E4 OS=Caenorhabditis elegans GN=ufd-2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1049
3594889591037 PREDICTED: probable ubiquitin conjugatio 0.986 0.998 0.815 0.0
4494378161043 PREDICTED: probable ubiquitin conjugatio 0.989 0.995 0.809 0.0
2555843231031 ubiquitin-protein ligase, putative [Rici 0.979 0.996 0.790 0.0
3565510461038 PREDICTED: probable ubiquitin conjugatio 0.983 0.994 0.780 0.0
3565731301036 PREDICTED: probable ubiquitin conjugatio 0.984 0.997 0.781 0.0
2241414591019 predicted protein [Populus trichocarpa] 0.969 0.998 0.777 0.0
425678691038 putative ubiquitin conjugation factor E4 0.988 0.999 0.774 0.0
1107351161037 UFD2 [synthetic construct] 0.987 0.999 0.774 0.0
2978116771038 U-box domain-containing protein [Arabido 0.988 0.999 0.768 0.0
4139554911029 hypothetical protein ZEAMMB73_905861 [Ze 0.957 0.975 0.646 0.0
>gi|359488959|ref|XP_003633847.1| PREDICTED: probable ubiquitin conjugation factor E4-like [Vitis vinifera] gi|296082973|emb|CBI22274.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1753 bits (4540), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 857/1051 (81%), Positives = 930/1051 (88%), Gaps = 16/1051 (1%)

Query: 1    MATTKPQRSPEEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDL 60
            MAT KPQ SP+EIEDIIL KIFLV+LN+ + ++D RI YLE+TAAE+LSEG+ ++LSRDL
Sbjct: 1    MATKKPQLSPDEIEDIILGKIFLVSLND-SMESDSRIVYLEMTAAEILSEGRPLKLSRDL 59

Query: 61   MERVLVDRLSGNFPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMI 120
            MERVL+DRLSG+FP AEPPF YLI CYRRA DE KKI + KDKNLRSELE VVKQAKK+ 
Sbjct: 60   MERVLIDRLSGHFPGAEPPFPYLIGCYRRACDEGKKIASKKDKNLRSELELVVKQAKKLA 119

Query: 121  VSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGIDGFGNSTSSGSQ 180
            VSYCRIHL NPD F SN D+        N S++SPLLP IF+EV   +DGFG S+     
Sbjct: 120  VSYCRIHLGNPDMF-SNWDSG------ANDSAVSPLLPLIFSEVSSSVDGFGGSSIG--- 169

Query: 181  CPPGFLKEFFEEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVK 240
            CPPGFL+EFF ++DFD+LDPI KGLYENLR  VL VSALGNFQQPLRA LYLV FP G K
Sbjct: 170  CPPGFLEEFFRDSDFDSLDPIFKGLYENLRSIVLKVSALGNFQQPLRAFLYLVRFPFGAK 229

Query: 241  SLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRP 300
            SLV+H+WWIP+  Y+NGRVIEMTSILGPFFHVSALPD  IF+ QPDVGQQCFSEASTRRP
Sbjct: 230  SLVSHRWWIPQGAYMNGRVIEMTSILGPFFHVSALPDRGIFQGQPDVGQQCFSEASTRRP 289

Query: 301  ADLLSSFTTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRAHIQVEPL 360
            ADLLSSFTTIKTVM GLY  L +VLL+LLKN DTRE+VL+YLAEVIN+NSSRAHIQV+PL
Sbjct: 290  ADLLSSFTTIKTVMNGLYDGLAEVLLSLLKNADTRESVLKYLAEVINKNSSRAHIQVDPL 349

Query: 361  SCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALHASSEEVS 420
            SCASSGMFV+LSAVMLRLC+PFLD  LTK DKIDPKYVFYS+RLDLR LTALHASSEEV+
Sbjct: 350  SCASSGMFVSLSAVMLRLCEPFLD--LTKMDKIDPKYVFYSTRLDLRGLTALHASSEEVA 407

Query: 421  EWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPS-LPAGRPASIGGGKSKYPF 479
            EWINK +P   +GS+ +SDGE++LLQSQEATSS   A  PS L   +P  I   K+KY F
Sbjct: 408  EWINKDSPGGTEGSRQYSDGESRLLQSQEATSSGSNAHGPSFLHNAKPVPISSEKAKYSF 467

Query: 480  ICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQGQTPSSQLNLEITRIE 539
            ICECFFMTARVLNLGLLKAFSDFKHLVQDISR ED+LATLKA QGQ PS +L  +I R E
Sbjct: 468  ICECFFMTARVLNLGLLKAFSDFKHLVQDISRCEDSLATLKAVQGQAPSPELEADIARFE 527

Query: 540  KEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKMPLPDTCPMEFACM 599
            KEIEL SQEKLCYEAQILRDG L+QHALSFYRLM+VWLV L+GGFKMPLP TCPMEFACM
Sbjct: 528  KEIELYSQEKLCYEAQILRDGTLLQHALSFYRLMVVWLVRLIGGFKMPLPSTCPMEFACM 587

Query: 600  PEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCW 659
            PEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASP +IRNPYLR+KMVEVLNCW
Sbjct: 588  PEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPNFIRNPYLRAKMVEVLNCW 647

Query: 660  MPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLE 719
            MPRRSGSS AT TLFEGH++SLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLE
Sbjct: 648  MPRRSGSS-ATTTLFEGHRLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLE 706

Query: 720  YLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTA 779
            YLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELK +EAEMSNT 
Sbjct: 707  YLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTV 766

Query: 780  EWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVAS 839
            EWERRPA ERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQI  PFLLPEM+ERVA+
Sbjct: 767  EWERRPATERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITVPFLLPEMVERVAN 826

Query: 840  MLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDG 899
            MLNYFLLQLVGPQRKSL+LKDPEKYEFRPKQLLKQIV IYVHLARGDTQ +FP AIS DG
Sbjct: 827  MLNYFLLQLVGPQRKSLSLKDPEKYEFRPKQLLKQIVHIYVHLARGDTQKIFPTAISKDG 886

Query: 900  RSYNEQLFSAAADVLWKIGEDGRIIQEFIELGAKAKAAASEAMDAEAALGDIPDEFLDPI 959
            RSYNEQLFSAAADVL +IGEDGRIIQEF ELGA+AK AASEAMDAEAALG+IPDEFLDPI
Sbjct: 887  RSYNEQLFSAAADVLRRIGEDGRIIQEFSELGARAKVAASEAMDAEAALGEIPDEFLDPI 946

Query: 960  QYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFIK 1019
            QYTLMKDPVILPSSRITVDRPVIQRHLLSD TDPFNRSHLT+DMLIPN ELKA+IEEFI+
Sbjct: 947  QYTLMKDPVILPSSRITVDRPVIQRHLLSDNTDPFNRSHLTSDMLIPNIELKARIEEFIR 1006

Query: 1020 SQGLKRHGEGLNIQSIKDTIQTTNGDM-LID 1049
            SQ LK+H EGL +Q  K  +QTT G+M LID
Sbjct: 1007 SQELKKHAEGLTMQQSKAAMQTTTGEMTLID 1037

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449437816|ref|XP_004136686.1| PREDICTED: probable ubiquitin conjugation factor E4-like [Cucumis sativus] gi|449494681|ref|XP_004159617.1| PREDICTED: probable ubiquitin conjugation factor E4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255584323|ref|XP_002532897.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223527331|gb|EEF29477.1| ubiquitin-protein ligase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356551046|ref|XP_003543890.1| PREDICTED: probable ubiquitin conjugation factor E4-like [Glycine max] Back     alignment and taxonomy information
>gi|356573130|ref|XP_003554717.1| PREDICTED: probable ubiquitin conjugation factor E4-like [Glycine max] Back     alignment and taxonomy information
>gi|224141459|ref|XP_002324089.1| predicted protein [Populus trichocarpa] gi|222867091|gb|EEF04222.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|42567869|ref|NP_568313.2| putative ubiquitin conjugation factor E4 [Arabidopsis thaliana] gi|75174048|sp|Q9LF41.1|UBE4_ARATH RecName: Full=Probable ubiquitin conjugation factor E4; AltName: Full=Plant U-box protein 1; AltName: Full=U-box domain-containing protein 1; AltName: Full=Ubiquitin-fusion degradation protein 2-like; Short=UB fusion protein 2-like gi|9755795|emb|CAC01739.1| ubiquitin-fusion degradation protein-like [Arabidopsis thaliana] gi|332004773|gb|AED92156.1| putative ubiquitin conjugation factor E4 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|110735116|gb|ABG89128.1| UFD2 [synthetic construct] Back     alignment and taxonomy information
>gi|297811677|ref|XP_002873722.1| U-box domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297319559|gb|EFH49981.1| U-box domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|413955491|gb|AFW88140.1| hypothetical protein ZEAMMB73_905861 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1049
TAIR|locus:21808621038 AT5G15400 [Arabidopsis thalian 0.988 0.999 0.759 0.0
DICTYBASE|DDB_G02922641089 nosA "U box domain-containing 0.508 0.489 0.357 1.9e-126
ASPGD|ASPL00000727571095 AN10556 [Emericella nidulans ( 0.527 0.505 0.335 1.3e-113
POMBASE|SPAC20H4.101010 ufd2 "ubiquitin-protein ligase 0.507 0.526 0.319 6.4e-106
ZFIN|ZDB-GENE-020205-11362 ube4b "ubiquitination factor E 0.515 0.397 0.348 8.1e-101
RGD|13047381172 Ube4b "ubiquitination factor E 0.515 0.461 0.340 9.6e-100
UNIPROTKB|F1NGY11182 UBE4B "Uncharacterized protein 0.510 0.453 0.341 2.1e-99
UNIPROTKB|O951551302 UBE4B "Ubiquitin conjugation f 0.515 0.415 0.344 6.1e-99
UNIPROTKB|J9P2H41173 UBE4B "Uncharacterized protein 0.515 0.461 0.342 6.7e-99
UNIPROTKB|F1P7I01312 UBE4B "Uncharacterized protein 0.515 0.412 0.342 1.8e-97
TAIR|locus:2180862 AT5G15400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 4065 (1436.0 bits), Expect = 0., P = 0.
 Identities = 797/1050 (75%), Positives = 892/1050 (84%)

Query:     1 MATTKPQRSPEEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDL 60
             MAT+KPQRSP EIEDIILRKIF VTL E+T D+DPRI YLE+TAAE+LSEGK++ LSRDL
Sbjct:     1 MATSKPQRSPAEIEDIILRKIFYVTLTEST-DSDPRIVYLEMTAAEILSEGKELLLSRDL 59

Query:    61 MERVLVDRLSGNFPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMI 120
             MERVL+DRLSG+F  AEPPF YLI C+RRA+DE KKI +MKDKNLRSE+E V KQAKK+ 
Sbjct:    60 MERVLIDRLSGDFSDAEPPFPYLIGCHRRAYDESKKIQSMKDKNLRSEMEIVTKQAKKLA 119

Query:   121 VSYCRIHLANPDFFGXXXXXXXXXXXXXXXXXXXPLLPFIFAEVGGG-IDGFGNSTSSGS 179
             VSYCRIHL NPD FG                   P+LP IFAEVG G +D FG S SSG 
Sbjct:   120 VSYCRIHLGNPDMFGNSDKPSGGLDNRLKKRNVSPVLPLIFAEVGSGSLDMFGAS-SSGV 178

Query:   180 QCPPGFLKEFFEEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGV 239
             Q PPGFL EFF+++DFD+LD ILK LYE+LR +V+NVS LG+FQ PLRAL YLVS PVG 
Sbjct:   179 QAPPGFLDEFFKDSDFDSLDSILKELYEDLRSTVINVSVLGDFQPPLRALKYLVSLPVGA 238

Query:   240 KSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRR 299
             KSLV+H+WW+P+  Y+NGR +E+TSILGPFFH+SALPD+ +FKSQPDVGQQCFSEAS RR
Sbjct:   239 KSLVSHEWWVPRGAYMNGRAMELTSILGPFFHISALPDNTLFKSQPDVGQQCFSEASERR 298

Query:   300 PADLLSSFTTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRAHIQVEP 359
             PADLLSSF+TIK  M  LY  L DVL+ LLK+TDTRE VL++LAEVIN N+SRAHIQV+P
Sbjct:   299 PADLLSSFSTIKNFMNILYSGLHDVLMILLKSTDTRERVLQFLAEVINANASRAHIQVDP 358

Query:   360 LSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALHASSEEV 419
             +SCASSGMFVNLSAVMLRLC+PFLD +LTKRDKIDPKY F   RL L  LTALHASSEEV
Sbjct:   359 VSCASSGMFVNLSAVMLRLCEPFLDPHLTKRDKIDPKYAFCGHRLKLSDLTALHASSEEV 418

Query:   420 SEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPF 479
             +EWI K   A A+ +   +  E++LLQS+EATSSS  AS      G+ A      +KY F
Sbjct:   419 TEWIGKDAMANANDAGRENGNESRLLQSKEATSSSSNAS------GQNAK---SATKYTF 469

Query:   480 ICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQGQTPSSQLNLEITRIE 539
             ICECFFMTARVLNLGLLKA SDFKHL QDISR ED LATLKA + Q PS QL L+I+R+E
Sbjct:   470 ICECFFMTARVLNLGLLKALSDFKHLAQDISRGEDNLATLKAMRDQAPSPQLELDISRME 529

Query:   540 KEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKMPLPDTCPMEFACM 599
             KE+ELSSQEKLC+EAQILRDGD IQ ALSFYRLM+VWLV LVGGFKMPLP TCPMEF+CM
Sbjct:   530 KELELSSQEKLCHEAQILRDGDFIQRALSFYRLMVVWLVGLVGGFKMPLPSTCPMEFSCM 589

Query:   600 PEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCW 659
             PEHFVEDAMELLIFASRIPKALDGV LDDFMNFIIMFMASP+Y+RNPYLR+KMVEVLNCW
Sbjct:   590 PEHFVEDAMELLIFASRIPKALDGVPLDDFMNFIIMFMASPEYVRNPYLRAKMVEVLNCW 649

Query:   660 MPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLE 719
             MPR S SSSAT+TLFEGHQ+SLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLE
Sbjct:   650 MPRSSSSSSATSTLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLE 709

Query:   720 YLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTA 779
             YLWQVPSHRNAWR+IAK+EEKGVYLNFLNFL+NDSIYLLDESLNKILE+K IEA+MSNTA
Sbjct:   710 YLWQVPSHRNAWRRIAKDEEKGVYLNFLNFLVNDSIYLLDESLNKILEIKQIEADMSNTA 769

Query:   780 EWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVAS 839
             EWE+RP QERQERTRLFHSQENI+RIDMKLANEDV+MLAFTSE+I APFLLPEM+ERVA+
Sbjct:   770 EWEQRPTQERQERTRLFHSQENIVRIDMKLANEDVTMLAFTSEEITAPFLLPEMVERVAN 829

Query:   840 MLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDG 899
             MLNYFLLQLVGPQRKSL+LKDPEKYEFRPKQLLKQIV IYV+LARGDT N+FP AISSDG
Sbjct:   830 MLNYFLLQLVGPQRKSLSLKDPEKYEFRPKQLLKQIVRIYVNLARGDTVNIFPGAISSDG 889

Query:   900 RSYNEQLFSAAADVLWKIGEDGRIIQEFIELGXXXXXXXXXXXXXXXXLGDIPDEFLDPI 959
             RSYNEQLF+A ADVL +IGE+GRIIQEF+ELG                LG+IPDEFLDPI
Sbjct:   890 RSYNEQLFNAGADVLRRIGEEGRIIQEFMELGTKAKAAASEALDAEAALGEIPDEFLDPI 949

Query:   960 QYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFIK 1019
             QYTLM+DPVILPSSRITVDRP+IQRHLLSD  DPFNR+HLT+DMLIP+ ELKAKI+EF+K
Sbjct:   950 QYTLMRDPVILPSSRITVDRPIIQRHLLSDNHDPFNRAHLTSDMLIPDIELKAKIDEFVK 1009

Query:  1020 SQGLKRHGEGLNIQSIKDTIQTTNGDMLID 1049
             S   K+   G +  S K+ IQTTN DMLID
Sbjct:  1010 SHQSKKRTSGED-SSNKERIQTTNSDMLID 1038
GO:0000151 "ubiquitin ligase complex" evidence=IEA
GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA
GO:0016567 "protein ubiquitination" evidence=IEA
GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
GO:0010413 "glucuronoxylan metabolic process" evidence=RCA
GO:0045492 "xylan biosynthetic process" evidence=RCA
DICTYBASE|DDB_G0292264 nosA "U box domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ASPGD|ASPL0000072757 AN10556 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
POMBASE|SPAC20H4.10 ufd2 "ubiquitin-protein ligase E4 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-020205-1 ube4b "ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1304738 Ube4b "ubiquitination factor E4B" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1NGY1 UBE4B "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|O95155 UBE4B "Ubiquitin conjugation factor E4 B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J9P2H4 UBE4B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1P7I0 UBE4B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LF41UBE4_ARATHNo assigned EC number0.77420.98850.9990yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1049
pfam10408625 pfam10408, Ufd2P_core, Ubiquitin elongating factor 0.0
COG5113929 COG5113, UFD2, Ubiquitin fusion degradation protei 1e-112
pfam0456473 pfam04564, U-box, U-box domain 1e-31
smart0050463 smart00504, Ubox, Modified RING finger domain 1e-20
>gnl|CDD|220735 pfam10408, Ufd2P_core, Ubiquitin elongating factor core Back     alignment and domain information 
 Score =  620 bits (1600), Expect = 0.0
 Identities = 247/685 (36%), Positives = 389/685 (56%), Gaps = 76/685 (11%)

Query: 266 LGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVL 325
           LGP   +S LPD       P+V ++ FS+ ++R    + +  ++++  +  L  +L  + 
Sbjct: 1   LGPLLSLSPLPD-----DFPEVAEKYFSDPNSRSKQQINALISSLRQTLSNLIDNLFQIF 55

Query: 326 LALLK-NTDTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLD 384
            +LL+ + ++RE  L + A++IN N  R  +QV+P + +S G  +NL+AV+LRLC PFLD
Sbjct: 56  KSLLRASPESREKTLSWFAKIINLNHKRRKMQVDPKTLSSDGFMLNLTAVLLRLCQPFLD 115

Query: 385 ANLTKRDKIDPKYVFY--SSRLDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDGEN 442
              +K DKIDP Y+    S R+D++  T L+A  EE  E+ ++ +   A           
Sbjct: 116 PTSSKIDKIDPDYLLRKLSKRIDIKEETRLNADEEEADEFYSEKSEEGAKN--------- 166

Query: 443 QLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFSDF 502
                                               FI ECFF+T R L+LG+      +
Sbjct: 167 ------------------------------------FITECFFLTLRALHLGIGPLIEKY 190

Query: 503 KHLVQDISRAEDTLATLKATQGQTPSSQLNLEITRIEKEIELSSQEKLCYEAQILRDGDL 562
           K L++++ R +D L  L+ ++          ++ R+EK++E+ S EKL  E  +L D  L
Sbjct: 191 KRLLRELKRLQDELEELEQSRSN------WAQLKRLEKQLEILSAEKLSLEGFLL-DPSL 243

Query: 563 IQHALSFYRLMIVWLVDLV---------GGFKMPLPDTCPMEFACMPEHFVEDAMELLIF 613
           +Q  L F   + VWL+ +             K+PLP   P  F  +PE F+ED ++ ++F
Sbjct: 244 LQRLLQFLSFVAVWLLRVADPKNLYPEGQKLKLPLPKKVPEAFKYLPEFFIEDIVDFILF 303

Query: 614 ASR-IPKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMP-RRSGSSSATA 671
                P  LD + LD  + F I+FM SP+YI+NP+L++K+VE+L   +P   +      +
Sbjct: 304 LFSNSPLVLDYIKLDSIIEFCIIFMGSPEYIKNPHLKAKLVEILFIGLPPLDNSQKGFLS 363

Query: 672 TLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAW 731
            +FEGH ++ E+L+  LLK Y+D+E TG+ TQFYDKFNIR+ I+++LEYLW+ PS+R   
Sbjct: 364 DIFEGHPLAKEHLLPALLKFYIDVEKTGASTQFYDKFNIRYYISQILEYLWKNPSYRQQL 423

Query: 732 RQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQE 791
           R+ +KE     ++ F+N L+ND+ YLLDESL+ + E+K ++ E+ + AEWE    +ER+E
Sbjct: 424 RKESKENND-FFVRFINLLLNDATYLLDESLSYLKEIKQLQKELQDRAEWESLSQEEREE 482

Query: 792 RTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGP 851
           R       E   +  ++LANE V +L   + +I  PFL PE+++R+A+MLNY L QLVGP
Sbjct: 483 RESELRQLERQAKSYLQLANETVKLLKLLTSEIPKPFLSPEIVDRLAAMLNYNLDQLVGP 542

Query: 852 QRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAA 911
           +  +L +K+PEKY F PKQLL  IV IY++L+R D    F  A++ DGRSY+ +LF  A 
Sbjct: 543 KCSNLKVKNPEKYGFDPKQLLSDIVDIYLNLSRSDE---FIEAVARDGRSYSPELFEKAE 599

Query: 912 DVLWKIG-EDGRIIQEFIELGAKAK 935
            +L +IG +    I++F EL  K +
Sbjct: 600 RILRRIGLKSEEDIEKFEELANKLE 624

This is the most conserved part of the core region of Ufd2P ubiquitin elongating factor or E4, running from helix alpha-11 to alpha-38. It consists of 31 helices of variable length connected by loops of variable size forming a compact unit; the helical packing pattern of the compact unit consists of five structural repeats that resemble tandem Armadillo (ARM) repeats. This domain is involved in ubiquitination as it binds Cdc48p and escorts ubiquitinated proteins from Cdc48p to the proteasome for degradation. The core is structurally similar to the nuclear transporter protein importin-alpha. The core is associated with the U-box at the C-terminus, pfam04564, which has ligase activity. Length = 625
>gnl|CDD|227444 COG5113, UFD2, Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|203049 pfam04564, U-box, U-box domain Back     alignment and domain information
>gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1049
COG5113929 UFD2 Ubiquitin fusion degradation protein 2 [Postt 100.0
KOG2042943 consensus Ubiquitin fusion degradation protein-2 [ 100.0
PF10408629 Ufd2P_core: Ubiquitin elongating factor core; Inte 100.0
PF0456473 U-box: U-box domain; InterPro: IPR003613 Quality c 99.82
smart0050463 Ubox Modified RING finger domain. Modified RING fi 99.58
KOG4692489 consensus Predicted E3 ubiquitin ligase [Posttrans 99.28
KOG4642284 consensus Chaperone-dependent E3 ubiquitin protein 99.14
TIGR00599 397 rad18 DNA repair protein rad18. This family is bas 98.44
PLN03208193 E3 ubiquitin-protein ligase RMA2; Provisional 98.38
PF1178957 zf-Nse: Zinc-finger of the MIZ type in Nse subunit 97.93
KOG0289 506 consensus mRNA splicing factor [General function p 97.85
COG5222427 Uncharacterized conserved protein, contains RING Z 97.73
PF1522742 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 97.53
PF1392339 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); 97.51
PF1392050 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); 97.39
PHA02929238 N1R/p28-like protein; Provisional 97.38
KOG0287 442 consensus Postreplication repair protein RAD18 [Re 97.24
PF1344543 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. 97.12
PF1483565 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM 97.08
KOG2177 386 consensus Predicted E3 ubiquitin ligase [Posttrans 97.07
KOG0823230 consensus Predicted E3 ubiquitin ligase [Posttrans 97.0
KOG0317293 consensus Predicted E3 ubiquitin ligase, integral 96.93
COG5432 391 RAD18 RING-finger-containing E3 ubiquitin ligase [ 96.86
PF1363944 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 96.71
PF0009741 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I 96.18
TIGR00570 309 cdk7 CDK-activating kinase assembly factor MAT1. A 96.0
PHA02926242 zinc finger-like protein; Provisional 95.88
cd0016245 RING RING-finger (Really Interesting New Gene) dom 95.7
KOG0320187 consensus Predicted E3 ubiquitin ligase [Posttrans 95.3
COG5243491 HRD1 HRD ubiquitin ligase complex, ER membrane com 95.27
KOG0297 391 consensus TNF receptor-associated factor [Signal t 95.23
smart0018439 RING Ring finger. E3 ubiquitin-protein ligase acti 94.98
KOG3039303 consensus Uncharacterized conserved protein [Funct 94.67
PF1267873 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 94.41
COG5574271 PEX10 RING-finger-containing E3 ubiquitin ligase [ 94.18
KOG2660 331 consensus Locus-specific chromosome binding protei 93.85
PF04641260 Rtf2: Rtf2 RING-finger 93.84
KOG4159 398 consensus Predicted E3 ubiquitin ligase [Posttrans 93.8
KOG0802 543 consensus E3 ubiquitin ligase [Posttranslational m 93.67
KOG2164 513 consensus Predicted E3 ubiquitin ligase [Posttrans 93.06
KOG2979262 consensus Protein involved in DNA repair [General 92.99
KOG0883 518 consensus Cyclophilin type, U box-containing pepti 92.73
PF1463444 zf-RING_5: zinc-RING finger domain 92.31
PF06416113 DUF1076: Protein of unknown function (DUF1076); In 92.21
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 91.56
KOG0311 381 consensus Predicted E3 ubiquitin ligase [Posttrans 90.82
KOG0826357 consensus Predicted E3 ubiquitin ligase involved i 90.82
KOG3039 303 consensus Uncharacterized conserved protein [Funct 90.57
COG5540374 RING-finger-containing ubiquitin ligase [Posttrans 85.59
KOG4367 699 consensus Predicted Zn-finger protein [Function un 84.3
KOG0824 324 consensus Predicted E3 ubiquitin ligase [Posttrans 83.04
KOG3113293 consensus Uncharacterized conserved protein [Funct 83.01
KOG2817394 consensus Predicted E3 ubiquitin ligase [Posttrans 82.34
KOG1002 791 consensus Nucleotide excision repair protein RAD16 82.31
PF0289150 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041 82.15
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=1.3e-168  Score=1416.66  Aligned_cols=906  Identities=24%  Similarity=0.359  Sum_probs=809.1

Q ss_pred             HHHHHHHHHHhheeeccCCCCCCCCCeeechhhHHHHhhcCCCcccChhhhhHHHHHHHhCCCCCCCChhhHHHHHHH-H
Q 001583           11 EEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDRLSGNFPAAEPPFLYLINCYR-R   89 (1049)
Q Consensus        11 ~~~~~~~l~~if~vTl~~~~~~~~~~~~yL~~l~~el~~e~~~~~l~~d~ld~~l~~rl~~~~~~~~~~~~YL~~c~~-R   89 (1049)
                      .+|.+++-..++.||.+|+    +.+-|||  +.+++..+|.  .|..+.+|.+|+.+|+...   ..+|.||.+||+ +
T Consensus         3 ~~~M~~ie~~~l~it~~p~----D~~~y~l--fk~~e~~~gS--~l~~n~~d~~LL~~l~~~~---nn~fsYl~~s~~fl   71 (929)
T COG5113           3 YPGMNRIELYELFITGMPA----DMDPYEL--FKEAECIRGS--YLTNNSSDNILLTLLPRYK---NNTFSYLQESAKFL   71 (929)
T ss_pred             CcccchhhhhhhhcccCcc----ccchhhh--cchhhccccC--ccccccHHHHHHHHccccC---CCchHHHHHHHHHH
Confidence            4699999889999999998    3445777  5566666676  4677799999999999864   788999999999 5


Q ss_pred             HHHHHHHhcCCCccchhhHHHHHHHHHHHHHHhhhhhhccCCCccCCCCCCccccccCCCCCCCCCchhHHHhhcCCCCC
Q 001583           90 AHDELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGID  169 (1049)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~vsY~~~~l~~Pd~F~~~~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~~  169 (1049)
                      .+..+|.. +  ++........-++.|.+|+++|+|.++.+||-|.. ..              -.++..+...      
T Consensus        72 ~q~~kri~-k--n~~~a~s~hs~~~li~~l~~~y~g~v~~~~e~FN~-e~--------------i~~ieg~~~~------  127 (929)
T COG5113          72 IQTIKRIV-K--NPEMAGSAHSPVALIPLLTNTYGGSVFDVMECFNS-EK--------------ISEIEGMARK------  127 (929)
T ss_pred             HHHHHHhc-C--CccccccccchHHHHHHHHhhccceEeehHhhcch-hH--------------HHHHHHHHHh------
Confidence            55444443 2  23333445567899999999999999999999922 10              1112222221      


Q ss_pred             CCCCCCCCCCCCChHHHHHHHHh--hCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHHhhCChhhhhhhhcCCc
Q 001583          170 GFGNSTSSGSQCPPGFLKEFFEE--ADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVKSLVNHQW  247 (1049)
Q Consensus       170 ~~~~~~~~~~~~~~~Fl~eli~r--~~~d~l~~if~~~~~~l~~~~~~~s~~~~~~~~l~~l~~L~~~k~ia~~l~~~~~  247 (1049)
                             -+  +|-.|+.++++|  ++...++.+|.++++.+....+-+.....-..++.++..|++.||||.++.+.|.
T Consensus       128 -------~~--~p~~fls~f~qr~l~e~~nld~lF~~~LE~l~~~~g~~~~dtV~~NVm~I~~~lv~~kPia~v~~k~p~  198 (929)
T COG5113         128 -------ML--LPMIFLSSFKQRQLDEASNLDNLFTSALEALTGLHGVLEEDTVLKNVMEIYWGLVNTKPIADVILKFPI  198 (929)
T ss_pred             -------cc--cHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhhcccchHHHHHHHHHHHHHHHhcCccHHHHhhcCcc
Confidence                   11  677999999999  4666699999999999988777666533345589999999999999999999999


Q ss_pred             CCCcccCcChhhhhhhcccccccccCCCCCCccccCCChhhhhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001583          248 WIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLA  327 (1049)
Q Consensus       248 f~P~~~~~~g~~~E~~SlLGp~f~lS~l~~~~~f~~~p~v~~~~F~~~~~~~~~~i~~~~~sl~~~l~~~~~~L~~I~~~  327 (1049)
                      |.|++   .+.+||.+|+|||+.++|++        ..+||..+|++...|+.+.+..+..+||.+|+.+++.||+|+++
T Consensus       199 ~~~t~---~p~~fe~kt~lG~i~sls~~--------~~dvA~r~~~~~~~rs~q~v~~s~~Sl~~t~s~~~d~lfqIi~~  267 (929)
T COG5113         199 YSGTN---FPCGFEYKTLLGFIESLSYK--------KCDVAARALDYLGIRSRQVVEKSRRSLRLTLSDHSDKLFQIIHS  267 (929)
T ss_pred             cCCCC---CCCCCcceeecccccccchh--------hhhhhhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99864   34479999999999999999        46789999999999999999999999999999999999999999


Q ss_pred             Hhc-CchhHHHHHHHHHHHHHhchhhhccccCCCccCchhhHHHHHHHHHHhhhhhcCCCCccccccccCCcCCCCCCCC
Q 001583          328 LLK-NTDTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDL  406 (1049)
Q Consensus       328 Llr-~~~sRe~vL~w~a~~i~~N~~R~~~~~d~~~~aSDGFmlNl~~VLlrLc~PF~d~~~~KidKID~~Y~~~~~rvdi  406 (1049)
                      |+| |.+.|+.+++|||.|+|+||+|++.++.-+...|||||.|++.||-||++||+|.+++|||+||..||+ ++||||
T Consensus       268 lvr~S~~lr~~~~~yfa~v~n~nh~R~~~~~~~~e~~Sdgfm~N~s~vlsRfs~pflDi~~sKID~vd~~YFn-NP~vDi  346 (929)
T COG5113         268 LVRSSKELRANFMKYFAKVINVNHERSKTIFSWRENISDGFMYNMSMVLSRFSRPFLDIGCSKIDMVDKIYFN-NPRVDI  346 (929)
T ss_pred             HHhccHHHHHHHHHHHHHHhccchhhccccCCHhhhcchHHHHHHHHHHHHhcccccccccchhhhHhHHhhc-CCcccc
Confidence            999 579999999999999999999999999999999999999999999999999999999999999999999 789999


Q ss_pred             CccccccCCHHHHHHHHhcCCCCCCCCCCCCCcchhhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCcchhhHHH
Q 001583          407 RSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPFICECFFM  486 (1049)
Q Consensus       407 ~~eTrl~a~~~e~~~~~~~~~p~~~~~~~~~~~~e~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~nFitecFFL  486 (1049)
                      ++|||+|+++.+++.||.+                                              +.++++||||+||||
T Consensus       347 k~ETklN~d~k~~dsFy~K----------------------------------------------~Ae~s~NFISD~FFl  380 (929)
T COG5113         347 KEETKLNVDEKSLDSFYTK----------------------------------------------PAEGSNNFISDIFFL  380 (929)
T ss_pred             ccchhcchhhhhhhccccC----------------------------------------------ccccCCccchhhHHh
Confidence            9999999999999999962                                              145688999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhccCHHHHHH
Q 001583          487 TARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQG-QTPSSQLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQH  565 (1049)
Q Consensus       487 T~~~lhlG~~~~~~~~~~l~r~i~~~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~~l~~l~~~~~~~~a~~L~dp~l~~~  565 (1049)
                      +++.+|||+++++.--+++.+.|+.++++++.-..... .-....+.+++.|+++.++...+...|+++ .|...++..+
T Consensus       381 ~lt~~HyGv~~tf~~~ek~g~~IrkLKE~le~e~~~~~gs~~At~lTaqlsrme~~lk~~~S~~~al~g-fl~~tsl~~~  459 (929)
T COG5113         381 YLTKIHYGVNATFTSCEKFGEYIRKLKESLEYECRLLDGSFQATRLTAQLSRMEAYLKGIDSKMSALNG-FLFMTSLFAD  459 (929)
T ss_pred             HHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHhHHHHHHHHHhhhHHHHHHHHH-HHHHhhhhhh
Confidence            99999999999999999999999988887764432111 112345678899999999999999999999 8999999999


Q ss_pred             HHHHHHHHHHHHHHHhcC--------CCCCCCCCCCcccccchhHHHHhHHHHHHHHhhc--cccccccchhHHHHHHHH
Q 001583          566 ALSFYRLMIVWLVDLVGG--------FKMPLPDTCPMEFACMPEHFVEDAMELLIFASRI--PKALDGVLLDDFMNFIIM  635 (1049)
Q Consensus       566 ~l~F~~~~~~wL~~l~~~--------~~lPLp~~~p~~f~~lPE~~iEdi~d~~~f~~r~--p~~l~~~~~~~l~~f~i~  635 (1049)
                      .+.|..+++.||.|+++|        .++|+-+.+|.+|+|+|||+||++++|..++.++  .+++.. .++++++||++
T Consensus       460 ~f~F~~f~t~~l~rv~dp~~typf~~~~Lp~~ENap~~fk~~pe~~ie~~~ny~l~~~k~~~Spif~~-~L~~l~Ef~~~  538 (929)
T COG5113         460 EFPFTDFMTEYLARVEDPWPTYPFYYKTLPWMENAPMTFKLIPEATIENALNYVLESIKDWRSPIFKK-ELEPLCEFVKI  538 (929)
T ss_pred             ccchHHHHHHHHHHhcCCCCCCCccccccchhcCCcchhhhchHHHhccHHHHHHHHHhcccCchhhc-cccchhhhhhh
Confidence            999999999999999986        4567778899999999999999999999999887  444443 39999999999


Q ss_pred             HhCCCCCccChhhHhhHHHHhH-hhcCCCCCCcchhHHhhhhchhhHHHHHHHHHHHhhhhcccCCCccchhhhhhhHHH
Q 001583          636 FMASPKYIRNPYLRSKMVEVLN-CWMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNI  714 (1049)
Q Consensus       636 fl~s~~~ikNP~LraklvevL~-~~~p~~~~~~~~~~~lf~~~~~a~~~L~~aLm~fYvdvE~TG~~sqFYdKFn~Ry~I  714 (1049)
                      ++++|++||||||++||+++|+ +.+|.+..++|.+.++|...+++.++|+||||.|||+||+||+|+|||||||+||.|
T Consensus       539 vl~~~~~iknp~L~~kl~~~ls~G~~~~~~~s~~~~~dif~~~kv~~r~LL~ALmaFYi~iEsTGqStqfydkfNirf~i  618 (929)
T COG5113         539 VLHRSSAIKNPMLNRKLDYYLSLGRDEMRMESRSIIHDIFKEGKVFSRWLLPALMAFYIEIESTGQSTQFYDKFNIRFII  618 (929)
T ss_pred             hcccHhhhccHHHHHHHHHHHhcCcchhccCchHHHHHHHHhhhhhhhhhHHHHHhHheeeeccCcccceeeeccceeeh
Confidence            9999999999999999999997 577877666788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCChhHHHHHHHHHHhhchhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhhcCCCHHHHHHHHH
Q 001583          715 AELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTR  794 (1049)
Q Consensus       715 ~~Ilk~LW~~~~~r~~l~~~a~~~~~~~FvrFvnlLiND~t~lLDE~L~~L~~I~~~q~e~~d~~~w~~l~~eer~e~~~  794 (1049)
                      +.+++.+|+.|.|.++|.++.+.+ -++||||..+|+||+||+|||+|.+|.++|++|.+++|....+ ...|+-+|.+.
T Consensus       619 c~~~~~~yK~Psy~~~L~~~~~tN-~~FFVkfda~mlndlt~lLDEal~~l~E~hniqs~Lad~~s~s-n~~e~~~elq~  696 (929)
T COG5113         619 CMMKDFEYKQPSYSEGLSSIKDTN-LPFFVKFDAKMLNDLTRLLDEALKELVEEHNIQSLLADAISNS-NISERIGELQK  696 (929)
T ss_pred             hHHHHHHhcCchhhhhhhhhhccC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccC-chhhHHHHHHH
Confidence            999999999999999999998774 8999999999999999999999999999999999999876543 44566678899


Q ss_pred             hHHHhhhhhhhhhhchHHHHHHHHHhHhhccCCCCchHHHHHHHHHHHHHHHHhhccccccccccCCcccCCChHHHHHH
Q 001583          795 LFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQ  874 (1049)
Q Consensus       795 ~l~~~er~ars~~~La~etv~ml~~~T~~i~~~Fl~peivdRlA~MLny~L~~LvGPk~~~LKVknpekY~F~Pk~lL~~  874 (1049)
                      .++.++||||++++|++++++||+.++++||++|+.||||+|||+||||||+.||||||.+||||||++|+|+||.||+.
T Consensus       697 ~la~a~rqA~~sc~l~d~~~~lf~~~~~~iP~aF~~~EiV~rla~mLNyNL~~l~GPKC~~LkVkdP~~Y~FnaK~LL~~  776 (929)
T COG5113         697 SLAFAKRQARNSCLLVDGCFDLFTHILDEIPDAFLVDEIVSRLARMLNYNLKILTGPKCTDLKVKDPEQYGFNAKNLLRR  776 (929)
T ss_pred             HHHHHHHhhcchheecccHHHHHHHHhhccchhhhhHHHHHHHHHHHhCcchhccCCCccceeecChhhcCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCCCCcchhhhhhccCCcCcHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCCC
Q 001583          875 IVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIGE-DGRIIQEFIELGAKAKAAASEAMDAEAALGDIPD  953 (1049)
Q Consensus       875 i~~iYlnL~~~~~~~~F~~aVa~DgRsy~~elF~~a~~il~~~~l-~~~~i~~~~~l~~~~~~~~~~~~~~e~~~~~iPd  953 (1049)
                      ++++|+||+.   +++|+.|||+|||||+.++|.+|.+||.+..+ ++.+|+++.+|+.++++.+..+..||+++||+||
T Consensus       777 ~~~VYinl~~---es~FveaVA~D~rsf~~~~F~rA~~I~~~k~L~s~~~IE~l~~f~nr~E~~r~~ea~EeED~GDvPD  853 (929)
T COG5113         777 MVMVYINLRS---ESKFVEAVASDKRSFDIDFFRRALRICENKYLISESQIEELRSFINRLEKVRVIEAVEEEDMGDVPD  853 (929)
T ss_pred             HHHHhhhhcc---hHHHHHHHHcccccccHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCch
Confidence            9999999995   45799999999999999999999999999988 9999999999999999998777788899999999


Q ss_pred             CCCCCCccccccCceecCCCCeeecHHHHHHHHhcCCCCCCCCCCCCCCCccccHHHHHHHHHHHHHcCCCC
Q 001583          954 EFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFIKSQGLKR 1025 (1049)
Q Consensus       954 eflcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~~lipn~~Lk~~I~~w~~~~~~~~ 1025 (1049)
                      ||+||+|+++|+|||+||.||.++||+||..||+++++|||||.||+.+||+||.+||++|..|.+.++.+.
T Consensus       854 eFlDPLmftimkdPV~Lp~S~i~IDRSTikahllsd~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k~~KH  925 (929)
T COG5113         854 EFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLSDGTDPFNRMPLTLDDVTPNAELREKINRFYKCKGQKH  925 (929)
T ss_pred             hhhCchhhhcccCCeecccccccccHHHHHHHHhcCCCCccccCCCchhhcCCCHHHHHHHHHHHhcccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999988855

>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10408 Ufd2P_core: Ubiquitin elongating factor core; InterPro: IPR019474 This entry represents the most conserved part of the core region of ubiquitin conjugation factor E4 (or Ub elongating factor, or Ufd2P), running from helix alpha-11 to alpha-38 Back     alignment and domain information
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis Back     alignment and domain information
>smart00504 Ubox Modified RING finger domain Back     alignment and domain information
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00599 rad18 DNA repair protein rad18 Back     alignment and domain information
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C Back     alignment and domain information
>KOG0289 consensus mRNA splicing factor [General function prediction only] Back     alignment and domain information
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A Back     alignment and domain information
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A Back     alignment and domain information
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A Back     alignment and domain information
>PHA02929 N1R/p28-like protein; Provisional Back     alignment and domain information
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] Back     alignment and domain information
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A Back     alignment and domain information
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B Back     alignment and domain information
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] Back     alignment and domain information
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A Back     alignment and domain information
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 Back     alignment and domain information
>PHA02926 zinc finger-like protein; Provisional Back     alignment and domain information
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] Back     alignment and domain information
>smart00184 RING Ring finger Back     alignment and domain information
>KOG3039 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown] Back     alignment and domain information
>PF04641 Rtf2: Rtf2 RING-finger Back     alignment and domain information
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2979 consensus Protein involved in DNA repair [General function prediction only] Back     alignment and domain information
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14634 zf-RING_5: zinc-RING finger domain Back     alignment and domain information
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74) Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3039 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4367 consensus Predicted Zn-finger protein [Function unknown] Back     alignment and domain information
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3113 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1049
2qiz_A982 Structure Of The Yeast U-Box-Containing Ubiquitin L 4e-79
3m62_A968 Crystal Structure Of Ufd2 In Complex With The Ubiqu 5e-79
2qj0_A982 Structure Of The Yeast U-Box-Containing Ubiquitin L 2e-75
1wgm_A98 Solution Structure Of The U-Box In Human Ubiquitin 3e-21
2kre_A100 Solution Structure Of E4bUFD2A U-Box Domain Length 2e-13
2kr4_A85 U-Box Domain Of The E3 Ubiquitin Ligase E4b Length 3e-13
2f42_A179 Dimerization And U-Box Domains Of Zebrafish C-Termi 1e-07
2c2l_A281 Crystal Structure Of The Chip U-Box E3 Ubiquitin Li 1e-07
2c2v_S78 Crystal Structure Of The Chip-Ubc13-Uev1a Complex L 7e-07
2oxq_C80 Structure Of The Ubch5 :chip U-Box Complex Length = 1e-06
>pdb|2QIZ|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase Ufd2p Length = 982 Back     alignment and structure 
Iteration: 1

 Score =  293 bits (749), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 218/727 (29%), Positives = 350/727 (48%), Gaps = 90/727 (12%)
Query: 333  DTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDK 392
            ++R +++ Y A + N+N  R          +S+G   N++ +++R   PFLD +  K DK
Sbjct: 298  NSRTDMISYFAHIANKNHLRRADHPPFKELSSNGFMSNITLLLVRFSQPFLDISYKKIDK 357
Query: 393  IDPKYVFYSSR-LDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEAT 451
            ID  Y    S  +DL   T L++  +E   + +K N   AD                   
Sbjct: 358  IDANYFNNPSLFIDLSGETRLNSDFKEADAFYDK-NRKTAD------------------- 397
Query: 452  SSSGGASEPSLPAGRPASIGGGKSKYPFICECFFMTARVLNLGL-------------LKA 498
                                   SK  FI +CFF+T   L+ GL             +KA
Sbjct: 398  -----------------------SKPNFISDCFFLTLTYLHYGLGGTLSFEEKMGSEIKA 434
Query: 499  FSDFKHLVQDISRAEDTLATLKATQ--------GQTPSSQLNLEITRIEKEIELSSQEKL 550
              +    V+ I+   D  A     Q          T S +  L+     + ++L   + +
Sbjct: 435  LKEEIEKVKKIAANHDVFARFITAQLSKMEKALKTTESLRFALQGFFAHRSLQLEVFDFI 494
Query: 551  CYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKMPLPD----TCPMEFACMPEHFVED 606
            C  +  L      +H   F ++ +  + D +G   +   D      P+ F   PE  VE 
Sbjct: 495  CGASTFLIRVVDPEHEFPFKQIKLPLIPDQIGVENVDNADFLRAHAPVPFKYYPEFVVEG 554
Query: 607  AMELLIFASRIPKA--LDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCW-MPRR 663
             +   ++ S+   +       L  F+ F  M +  P+ + NP+L+ K+V++L+   MP  
Sbjct: 555  PVNYSLYISKYQTSPIFRNPRLGSFVEFTTMVLRCPELVSNPHLKGKLVQLLSVGAMPLT 614
Query: 664  SGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLW- 722
              S      +FE  ++  + L+  LL  YV +E TGS +QFYDKFN R++I+ +LE L+ 
Sbjct: 615  DNSPGFMMDIFEHDELVNKNLLYALLDFYVIVEKTGSSSQFYDKFNSRYSISIILEELYY 674
Query: 723  QVPSHRNA--WRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAE 780
            ++PS++N   W+    +     ++ F+  ++ND  +LLDE L+ + E+  I+ E+ N A 
Sbjct: 675  KIPSYKNQLIWQS---QNNADFFVRFVARMLNDLTFLLDEGLSNLAEVHNIQNELDNRAR 731
Query: 781  WE--RRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVA 838
                 R  ++++ +TRL  S     +    LA++ + +    S+ I A F+ PE++ R+A
Sbjct: 732  GAPPTREEEDKELQTRL-ASASRQAKSSCGLADKSMKLFEIYSKDIPAAFVTPEIVYRLA 790
Query: 839  SMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSD 898
            SMLNY L  LVGP+   L +KDP+ Y F PK LLK +  +Y++L+    Q+ F +A++ D
Sbjct: 791  SMLNYNLESLVGPKCGELKVKDPQSYSFNPKDLLKALTTVYINLSE---QSEFISAVAKD 847
Query: 899  GRSYNEQLFSAAADVLWKIGEDGRIIQEFIE----LGXXXXXXXXXXXXXXXXLGDIPDE 954
             RS+N  LF  A D+L +  + G    EFIE                       GD+PDE
Sbjct: 848  ERSFNRNLFVRAVDILGR--KTGLASPEFIEKLLNFANKAEEQRKADEEEDLEYGDVPDE 905
Query: 955  FLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKI 1014
            FLDP+ YT+MKDPVILP+S++ +DR  I+ HLLSD+TDPFNR  L  + + PN EL+ KI
Sbjct: 906  FLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKI 965
Query: 1015 EEFIKSQ 1021
              F K +
Sbjct: 966  LCFKKQK 972
>pdb|3M62|A Chain A, Crystal Structure Of Ufd2 In Complex With The Ubiquitin-Like (Ubl) Domain Of Rad23 Length = 968 Back     alignment and structure
>pdb|2QJ0|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase Ufd2p Length = 982 Back     alignment and structure
>pdb|1WGM|A Chain A, Solution Structure Of The U-Box In Human Ubiquitin Conjugation Factor E4a Length = 98 Back     alignment and structure
>pdb|2KRE|A Chain A, Solution Structure Of E4bUFD2A U-Box Domain Length = 100 Back     alignment and structure
>pdb|2KR4|A Chain A, U-Box Domain Of The E3 Ubiquitin Ligase E4b Length = 85 Back     alignment and structure
>pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of Hsp70 Interacting Protein Length = 179 Back     alignment and structure
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281 Back     alignment and structure
>pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 78 Back     alignment and structure
>pdb|2OXQ|C Chain C, Structure Of The Ubch5 :chip U-Box Complex Length = 80 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1049
3m62_A968 Ubiquitin conjugation factor E4; armadillo-like re 0.0
2kre_A100 Ubiquitin conjugation factor E4 B; U-box domain, E 7e-36
1wgm_A98 Ubiquitin conjugation factor E4A; ubiquitinating e 2e-35
2kr4_A85 Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri 1e-34
2f42_A179 STIP1 homology and U-box containing protein 1; cha 8e-26
1t1h_A78 Gspef-atpub14, armadillo repeat containing protein 2e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 2e-12
2bay_A61 PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l 4e-11
3ztg_A92 E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR 3e-08
2yu4_A94 E3 SUMO-protein ligase NSE2; SP-ring domain, struc 2e-07
3htk_C267 E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- 2e-04
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968 Back     alignment and structure
 Score =  769 bits (1986), Expect = 0.0
 Identities = 250/1059 (23%), Positives = 443/1059 (41%), Gaps = 140/1059 (13%)

Query: 9    SPEEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDR 68
            SPE      +  I  +T + +            L  +E + +G    L  D ++ +L+ +
Sbjct: 2    SPEFRSMTAIEDILQITTDPS------DTRGYSLLKSEEVPQGS--TLGVDFIDTLLLYQ 53

Query: 69   LSGNFPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIHL 128
            L+ N    + PF YL +C+RR   + +     K+K     L +  ++  ++++ Y  + L
Sbjct: 54   LTEN-EKLDKPFEYLNDCFRRNQQQKRI---TKNKPNAESLHSTFQEIDRLVIGYGVVAL 109

Query: 129  ANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGIDGFGNSTSSGSQCPPGFLKE 188
               +F  +                    +  I + V                    FL +
Sbjct: 110  QIENFCMNGA--------------FINYITGIVSNVN---------------SYTDFLSQ 140

Query: 189  F-----FEEADFDTLDPILKGLYENLRGSVLNVSALGN--FQQPLRALLYLVSFPVGVKS 241
                   E    D L+ +   L E     V +     +  +   L      V+F    + 
Sbjct: 141  IIQRAILEGTALDLLNAVFPTLLEYCNKHVSHFDLNESVIYNNVLTIFELFVTFKPIAEI 200

Query: 242  LVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPA 301
                  +         +  E  +ILGP   +S +           V  + + +   R   
Sbjct: 201  FTKIDGFFADYS-CKPQDFERKTILGPILSLSPIE--------AAVAIRNYGDNLLRSKQ 251

Query: 302  DLLSSFTTIKTVMRGLYKDLGDVLLALLK-NTDTRENVLEYLAEVINRNSSRAHIQVEPL 360
                   +++   + +   L  ++  L++ + ++R +++ Y A + N+N  R        
Sbjct: 252  QTAMIHESLQAEHKVVIDRLFFIVDKLVRGSLNSRTDMISYFAHIANKNHLRRADHPPFK 311

Query: 361  SCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSS-RLDLRSLTALHASSEEV 419
              +S+G   N++ +++R   PFLD +  K DKID  Y    S  +DL   T L++  +E 
Sbjct: 312  ELSSNGFMSNITLLLVRFSQPFLDISYKKIDKIDANYFNNPSLFIDLSGETRLNSDFKEA 371

Query: 420  SEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPF 479
              + +K                                                 SK  F
Sbjct: 372  DAFYDKNRKTA-------------------------------------------DSKPNF 388

Query: 480  ICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQGQTP--SSQLNLEITR 537
            I +CFF+T   L+ GL    S  + +  +I   ++ +  +K         +  +  ++++
Sbjct: 389  ISDCFFLTLTYLHYGLGGTLSFEEKMGSEIKALKEEIEKVKKIAANHDVFARFITAQLSK 448

Query: 538  IEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKM----------- 586
            +EK ++ +   +   +        L      F      +L+ +V                
Sbjct: 449  MEKALKTTESLRFALQGFFA-HRSLQLEVFDFICGASTFLIRVVDPEHEFPFKQIKLPLI 507

Query: 587  -------------PLPDTCPMEFACMPEHFVEDAMELLIFASRI--PKALDGVLLDDFMN 631
                          L    P+ F   PE  VE  +   ++ S+           L  F+ 
Sbjct: 508  PDQIGVENVDNADFLRAHAPVPFKYYPEFVVEGPVNYSLYISKYQTSPIFRNPRLGSFVE 567

Query: 632  FIIMFMASPKYIRNPYLRSKMVEVLNCW-MPRRSGSSSATATLFEGHQMSLEYLVRNLLK 690
            F  M +  P+ + NP+L+ K+V++L+   MP    S      +FE  ++  + L+  LL 
Sbjct: 568  FTTMVLRCPELVSNPHLKGKLVQLLSVGAMPLTDNSPGFMMDIFEHDELVNKNLLYALLD 627

Query: 691  LYVDIEFTGSHTQFYDKFNIRHNIAELLEYLW-QVPSHRNAWRQIAKEEEKGVYLNFLNF 749
             YV +E TGS +QFYDKFN R++I+ +LE L+ ++PS++N     + +     ++ F+  
Sbjct: 628  FYVIVEKTGSSSQFYDKFNSRYSISIILEELYYKIPSYKNQLIWQS-QNNADFFVRFVAR 686

Query: 750  LINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPA-QERQERTRLFHSQENIIRIDMK 808
            ++ND  +LLDE L+ + E+  I+ E+ N A        +E +E      S     +    
Sbjct: 687  MLNDLTFLLDEGLSNLAEVHNIQNELDNRARGAPPTREEEDKELQTRLASASRQAKSSCG 746

Query: 809  LANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRP 868
            LA++ + +    S+ I A F+ PE++ R+ASMLNY L  LVGP+   L +KDP+ Y F P
Sbjct: 747  LADKSMKLFEIYSKDIPAAFVTPEIVYRLASMLNYNLESLVGPKCGELKVKDPQSYSFNP 806

Query: 869  KQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKI--GEDGRIIQE 926
            K LLK +  +Y++L+       F +A++ D RS+N  LF  A D+L +         I++
Sbjct: 807  KDLLKALTTVYINLSEQSE---FISAVAKDERSFNRNLFVRAVDILGRKTGLASPEFIEK 863

Query: 927  FIELGAKAKAAASEAMDAEAALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHL 986
             +    KA+       + +   GD+PDEFLDP+ YT+MKDPVILP+S++ +DR  I+ HL
Sbjct: 864  LLNFANKAEEQRKADEEEDLEYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHL 923

Query: 987  LSDATDPFNRSHLTADMLIPNTELKAKIEEFIKSQGLKR 1025
            LSD+TDPFNR  L  + + PN EL+ KI  F K +  + 
Sbjct: 924  LSDSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKEEA 962
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Length = 100 Back     alignment and structure
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Length = 98 Back     alignment and structure
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Length = 85 Back     alignment and structure
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Length = 179 Back     alignment and structure
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Length = 78 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 Back     alignment and structure
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Length = 61 Back     alignment and structure
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92 Back     alignment and structure
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94 Back     alignment and structure
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1049
d1wgma_98 g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu 2e-16
d1t1ha_78 g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre 5e-14
d2c2la280 g.44.1.2 (A:225-304) STIP1 homology and U box-cont 5e-08
d1jm7a_103 g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie 5e-04
d2baya156 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 { 0.003
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98 Back     information, alignment and structure

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (180), Expect = 2e-16
 Identities = 50/92 (54%), Positives = 61/92 (66%), Gaps = 2/92 (2%)

Query: 936  AAASEAM--DAEAALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDP 993
            ++ S  +    E    D  DEFLDPI  TLM DPV+LPSSR+TVDR  I RHLLSD TDP
Sbjct: 2    SSGSSGLQQQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDP 61

Query: 994  FNRSHLTADMLIPNTELKAKIEEFIKSQGLKR 1025
            FNRS LT D + PNTELK KI+ ++  +  + 
Sbjct: 62   FNRSPLTMDQIRPNTELKEKIQRWLAERKQQS 93
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80 Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1049
d1wgma_98 Ubiquitin conjugation factor E4A {Human (Homo sapi 99.84
d2c2la280 STIP1 homology and U box-containing protein 1, STU 99.69
d1t1ha_78 E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi 99.68
d2baya156 Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac 99.12
d1jm7a_103 brca1 RING domain {Human (Homo sapiens) [TaxId: 96 98.93
d1jm7b_97 bard1 RING domain {Human (Homo sapiens) [TaxId: 96 98.87
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 98.77
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 98.55
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 97.73
d1bora_56 Acute promyelocytic leukaemia proto-oncoprotein PM 97.71
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 97.62
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 97.19
d1v87a_114 Deltex protein 2 RING-H2 domain {Mouse (Mus muscul 97.03
d3dplr188 RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase 96.69
d1ur6b_52 Not-4 N-terminal RING finger domain {Human (Homo s 96.54
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 95.1
d1wima_94 UbcM4-interacting protein 4 (KIAA0161) {Human (Hom 90.72
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.4e-21  Score=158.69  Aligned_cols=84  Identities=58%  Similarity=0.852  Sum_probs=78.2

Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCEEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             67642199999888977321123963027998010699999999639999999999998996454999999999999819
Q 001583          943 DAEAALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFIKSQG 1022 (1049)
Q Consensus       943 ~~e~~~~~iPdeflcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~~~~dPftr~pL~~~~l~pn~~Lk~~I~~~~~~~~ 1022 (1049)
                      +++.++.++|++|+||||+++|+|||++|+|+|+|||++|.+||.++.+||+||+|++.++|+||.+||+.|++|+++++
T Consensus        11 ~~~~~~~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~~L~pN~~Lr~~I~~~~~~~~   90 (98)
T d1wgma_          11 QEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERK   90 (98)
T ss_dssp             SCCCCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHST
T ss_pred             HHHHHHCCCCHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHH
T ss_conf             06765159907748867346887777623553201499999998706876655566640112013999999999999998


Q ss_pred             CCCC
Q ss_conf             8877
Q 001583         1023 LKRH 1026 (1049)
Q Consensus      1023 ~~~~ 1026 (1049)
                      .+..
T Consensus        91 ~~~~   94 (98)
T d1wgma_          91 QQSG   94 (98)
T ss_dssp             TCSC
T ss_pred             HHCC
T ss_conf             7306
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure