Citrus Sinensis ID: 001594


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------105
MEDDDEFGDLYTDVLRPLSAASQSPHQTSPAAPTSLHRPIDLDLNLKSNDHPASAPNSTPPHTLAPTPPLPSFHAPPRADTDGEFTDNDNDVKVKFDIEEANNGISNDDDVPGIEIPGISQNSVENSEHQNRNEGEAGEEAEDDWESDSEDDLQIVLNEDNHRPMLIDGGGGDDDDDEDGDPLVIVADADASNHQGLMVEEQEWGGDDAPAQMGEGGAEKKEGTGERANGAAASAATAAAAAKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQSKIRVYESGRDQPTGRAIQVEGGSGERLPSIDTRPPRIRDSDAIIEIVCQDSVDDDSSAGNGDRDNDLPREDRRGENDGAEDEMGPVDTEYFDGFREAYDSRNRELVRHEAPFMNVAHDNIPEGNGLLPFPPEAPLRYRPGSRGPTPKYPGENIGTSHEQRRRPGRTGDRSPRMTPSQSPQIRKFHDNQDEESVESMEGKHSPLSSPVIVRDARELSVEHKDAVHDELWREGDEEVMQDRRSTRMGSMKKHPEENEQSFRRKDREGRQEMERNRMVAIGREGSHPRRDFDPSLTHDMQMKPEGFDRRKERENSDGVWQRREDEPYSRKNRIEDTRKREREHLDEIGARHRGKARESERIDRDEYLHSRKQLDNGSYRPHYDKDASSRHRERDDSLKSRYEMVDDYISKRRKDDEYVRRDHAEKDEILHGHRDLTSRRKRERDDILDQRRREDQQRIRENFDDHHPVRHKDENWSQRERGERQREREDWHRLKPHEEILSKREREEGRGAVRSGRSSEDRAWVGHARVKDEYKGSDKEYQVKDTVRHSEQLKRRERIEDESRPPHRGREDVYARGNQISNEDRKSRQERSGTRNDRSANTSDNNRVNEKKHKESSRKNRESEVGNHNSLVASKRNQEDQSGHVSEMVCSIDTRA
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccEEEEEcccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccHHHHHHcccccccccccccccHHHHHHccccccHHHHHHcccHHHHHHccccccccccccccHHHHHHHHHcHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccccccHHHHHccccccHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHcccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHccccccccccccHHHHcccccccccccccEEEcccccc
ccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccHcccccccccccccccEEEEEcccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccEEEEEcHHHHcccccccccccHHHHHcccccHHHHHHHHHHHHHHHccccccccEEEEccccccccccccEEcccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcHccccccccHHHcccccHHcccccccccccHHHHHHHccccHHHHHHHccHHHHHHHHHHcccccccccccccHHHccccccccccHHHHcccHHcccccccccccHcHcccccHHHcHHHHHccccccHccccHHcHHHHccHHHcccHHccccccccccccccccccHHcccccHHcccccccccHHHHHcHHHHHHHHccccHHHHHccccccHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHcHHHHHHHHHHHHccccHHHHHHHHHHHccccccccccHHHHHHcccHHHHHccccccHHHHcHHHHcccHHHHHHHHHHHHcccccccccccccccccccHHHccccHcccccccccccccHHHHHHHHHHHHHcccccccccccccccccccHcccccccccccccEEcccccc
medddefgdlytdvlrplsaasqsphqtspaaptslhrpidldlnlksndhpasapnstpphtlaptpplpsfhappradtdgeftdndndvkvKFDIEeanngisndddvpgieipgisqnsvensehqnrnegeageeaeddwesdsedDLQIVLnednhrpmlidggggdddddedgdplvIVADadasnhqglmveeqewggddapaqmgeggaekkegtgerangAAASAATAAAAAKIGysnhfayhnpyhsqfkyvrpgaapipgsatavaaggpgqvrplvnmgpaagrgrgdwrpagmktappmqkgfhpgfgmsasgvnmagrgleftlpshktifevdidgfeekpwkypgvditdffnfglneESWKDYCKQLEQHRLETTMQSKIRVyesgrdqptgraiqveggsgerlpsidtrpprirdsdAIIEIVCqdsvdddssagngdrdndlpredrrgendgaedemgpvdteyFDGFREAYDSRNRElvrheapfmnvahdnipegngllpfppeaplryrpgsrgptpkypgenigtsheqrrrpgrtgdrsprmtpsqspqirkfhdnqdeesvesmegkhsplsspvivRDARELSVEHKDAVHDELWREGDEEVMQDRRstrmgsmkkhpeeneqsFRRKDREGRQEMERNRMVAIGregshprrdfdpslthdmqmkpegfdrrkerensdgvwqrredepysrknriEDTRKREREHLDEIGarhrgkareseridrdeylhsrkqldngsyrphydkdassrhrerddslKSRYEMVDDYISkrrkddeyvrrdhaekdeilhghrdltsrrkrerDDILDQRRREDQQRIREnfddhhpvrhkdenwsqreRGERQREredwhrlkpheeiLSKREreegrgavrsgrssedrawvgharvkdeykgsdkeyqvkDTVRHSEQLKrreriedesrpphrgredvyargnqisnedrksrqersgtrndrsantsdnnrvnekkhkessrknresevgnhnslvaskrnqedqsghvsemvcsidtra
MEDDDEFGDLYTDVLRPlsaasqsphqtspaaptslhRPIDLDLNLKSNDHPASAPNSTPPHTLAPTPPLPSFHAPPRADTDGEFTDNDNDVKVKFDIEEAnngisndddvpgIEIPGISQNSVENSEHQNRNEGEAGEEAEDDWESDSEDDLQIVLNEDNHRPMLIDGGGGDDDDDEDGDPLVIVADADASNHQGLMVEEQEWGGDDAPAQMGEGGAEKKEGTGERANGAAASAATAAAAAKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLettmqskirvyesgrdqptgraiqveggsgerlpsidtrpprirdSDAIIEIVCqdsvdddssagngdrdndlpredrrgendgaedemgpvdTEYFDGFREAYDSRNRELVRHEAPFMNVAHDNIPEGNGLLPFPPEAPLRYRPGSRGPtpkypgenigtsheqrrrpgrtgdrsprmtpsqspqirkfhdNQDEESVesmegkhsplsspVIVRDARELSVEHkdavhdelwregdeevmqdrrstrmgsmkkhpeeneqsfrrkdregrqeMERNRMvaigregshprrdfdpslthdmqmkpegfdrrkerensdgvwqrredepysrknriedtrkrerehldeigarhrgkareseridrdeylhsrkqldngsyrphydkdassrhrerddslksryemvddyiskrrkddeyvrrdhaekdeilhghrdltsrrkrerddildqrrredqqrirenfddhhpvrhkdenwsqrergerqreredwhrlkpheeilskrereegrgavrsgrssedrawvgharvkdeykgsdkeyqvkdtvrhseqlkrreriedesrpphrgredvyargnqisnedrksrqersgtrndrsantsdnnrvnekkhkessrknresevgnhnslvaskrnqedqsghvsemvcsidtra
MEDDDEFGDLYTDVLRPLSAASQSPHQTSPAAPTSLHRPIDLDLNLKSNDHPASAPNStpphtlaptpplpSFHAPPRADTDGEFTDNDNDVKVKFDIEEANNGISNDDDVPGIEIPGISQNSVENSEHQNRNegeageeaeddwesdseddLQIVLNEDNHRPMLIdggggdddddedgdPLVIVADADASNHQGLMVEEQEWGGDDAPAQMgeggaekkegtgeRangaaasaataaaaaKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQSKIRVYESGRDQPTGRAIQVEGGSGERLPSIDTRPPRIRDSDAIIEIVCQDSVDDDSSAGNGDRDNDLPREDRRGENDGAEDEMGPVDTEYFDGFREAYDSRNRELVRHEAPFMNVAHDNIPEGNGLLPFPPEAPLRYRPGSRGPTPKYPGENIGTSHEQRRRPGRTGDRSPRMTPSQSPQIRKFHDNQDEESVESMEGKHSPLSSPVIVRDARELSVEHKDAVHDELWREGDEEVMQDRRSTRMGSMKKHPEENEQSFRRKDREGRQEMERNRMVAIGREGSHPRRDFDPSLTHDMQMKPEGFDRRKERENSDGVWQRREDEPYSRKNRIEDTRKREREHLDEIGARHRGKARESERIDRDEYLHSRKQLDNGSYRPHYDKDASSRHRERDDSLKSRYEMVDDYISKRRKDDEYVRRDHAEKDEILHGHRDLTSRRKrerddildqrrredqqrireNFDDHHPVRHKDENWSqrergerqrereDWHRLKPHEEILSKREREEGRGAVRSGRSSEDRAWVGHARVKDEYKGSDKEYQVKDTVRHSEQLKRRERIEDESRPPHRGREDVYARGNQISNEDRKSRQERSGTRNDRSANTSDNNRVNEKKHKESSRKNRESEVGNHNSLVASKRNQEDQSGHVSEMVCSIDTRA
**********************************************************************************************************************************************************************************************************************************************AAAAKIGYSNHFAYHNPYHSQFKYVRPGAAPI*********************************************************VNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRL***********************************************AIIEIVC*****************************************YFDGFR****************FM***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
***DDEFGDLYTDVL**********************************************************************************************DV**IEI***********************************DLQIVL************************PLVIVAD***************************************************************************************************************************************************EFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCK*****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
MEDDDEFGDLYTDVLRPLS***************SLHRPIDLDLNLKSND***********HTLAPTPPLPSFHAPPRADTDGEFTDNDNDVKVKFDIEEANNGISNDDDVPGIEIPGISQNS****************************DLQIVLNEDNHRPMLIDGGGGDDDDDEDGDPLVIVADADASNHQGLMVEEQEWGGDDAPAQM***************************AAKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQSKIRVYESGRDQPTGRAIQVEGGSGERLPSIDTRPPRIRDSDAIIEIVCQDSV**************LPREDRRGENDGAEDEMGPVDTEYFDGFREAYDSRNRELVRHEAPFMNVAHDNIPEGNGLLPFPPEAPLRYRPGSRGPTPKYPGENIG*************************************************SSPVIVRDARELSVEHKDAVHDELWREGDE***********************************MERNRMVAIGREGSHPRRDFDPSLTHDMQMKPEGF*********************SRKNRIEDTRKREREHLDEIG************IDRDEYLHSRKQLDNGSYR*****************LKSRYEMVDDYISKRRKDDEYVRRDHAEKDEILHGHRDLTSRRKRERDDILDQRRREDQQRIRENFDDHHPVRHKD****************DWHRLKPHEEILSKR******************AWVGHARVKDEYKGSDKEYQVKDTVRHSEQLKRR*************REDVYARGNQI***********************************************HNSLVAS***********SEMVCSIDTRA
*****EFGDLYTDVLRPLS*********************************************************************DNDVKVKFDIEE*NNGISNDDDVPGI**********************************SEDDLQIVLNED*******************GDPLVIVADADASNHQGLMVEEQEW*GD******************************AAAAAKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGP***RGRGDWRPAGMKTA***QKGFHPGFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQSKIRVYESGRD*P*GRAIQ*EG*SGERLPSIDTRPPRIRDSDAIIEIVCQDS*************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MEDDDEFGDLYTDVLRPLSAASQSPHQTSPAAPTSLHRPIDLDLNLKSNDHPASAPNSTPPHTLAPTPPLPSFHAPPRADTDGEFTDNDNDVKVKFDIEEANNGISNDDDVPGIEIPGISQNSVENSEHQNRNEGEAGEEAEDDWESDSEDDLQIVLNEDNHRPMLIDGGGGDDDDDEDGDPLVIVADADASNHQGLMVEEQEWGGDDAPAQMGEGGAEKKEGTGERANGAAASAATAAAAAKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQSKIRVYESGRDQPTGRAIQVEGGSGERLPSIDTRPPRIRDSDAIIEIVCQDSVDDDSSAGNGDRDNDLPREDRRGENDGAEDEMGPVDTEYFDGFREAYDSRNRELVRHEAPFMNVAHDNIPEGNGLLPFPPEAPLRYRPGSRGPTPKYPGENIGTSHEQRRRPGRTGDRSPRMTPSQSPQIRKFHDNQDEESVESMEGKHSPLSSPVIVRDARELSVEHKDAVHDELWREGDEEVMQDRRSTRMGSMKKHPEENEQSFRRKDREGRQEMERNRMVAIGREGSHPRRDFDPSLTHDMQMKPEGFDRRKERENSDGVWQRREDEPYSRKNRIEDTRKREREHLDEIGARHRGKARESERIDRDEYLHSRKQLDNGSYRPHYDKDASSRHRERDDSLKSRYEMVDDYISKRRKDDEYVRRDHAEKDEILHGHRDLTSRRKRERDDILDQRRREDQQRIRENFDDHHPVRHKDENWSQRERGERQREREDWHRLKPHEEILSKREREEGRGAVRSGRSSEDRAWVGHARVKDEYKGSDKEYQVKDTVRHSEQLKRRERIEDESRPPHRGREDVYARGNQISNEDRKSRQERSGTRNDRSANTSDNNRVNEKKHKESSRKNRESEVGNHNSLVASKRNQEDQSGHVSEMVCSIDTRA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1048 2.2.26 [Sep-21-2011]
Q5XJD3570 Pre-mRNA 3'-end-processin no no 0.063 0.117 0.394 3e-11
Q9D824581 Pre-mRNA 3'-end-processin yes no 0.071 0.129 0.376 6e-11
Q5U317536 Pre-mRNA 3'-end-processin yes no 0.071 0.139 0.376 9e-11
Q6UN15594 Pre-mRNA 3'-end-processin no no 0.084 0.149 0.343 9e-11
Q5RAA7588 Pre-mRNA 3'-end-processin yes no 0.084 0.151 0.343 1e-10
Q09801344 Pre-mRNA polyadenylation yes no 0.044 0.136 0.468 2e-09
Q6BGR9328 Pre-mRNA polyadenylation yes no 0.062 0.201 0.363 6e-08
Q6FJ55327 Pre-mRNA polyadenylation yes no 0.081 0.259 0.340 1e-07
Q6C784221 Pre-mRNA polyadenylation yes no 0.051 0.244 0.462 2e-07
Q5AGC1326 Pre-mRNA polyadenylation N/A no 0.071 0.230 0.367 4e-07
>sp|Q5XJD3|FIP1_DANRE Pre-mRNA 3'-end-processing factor FIP1 OS=Danio rerio GN=fip1l1 PE=1 SV=1 Back     alignment and function desciption
 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 46/71 (64%), Gaps = 4/71 (5%)

Query: 320 GFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWK 379
           G G    GV++   G    +P    + E D++ FEEKPW+ PG D++D+FN+G NE++WK
Sbjct: 140 GAGAKVKGVDLEAPGSINGVP----VLEADMESFEEKPWRKPGADLSDYFNYGFNEDTWK 195

Query: 380 DYCKQLEQHRL 390
            YC++ ++ R+
Sbjct: 196 AYCEKQKRLRM 206




Involved in mRNA processing.
Danio rerio (taxid: 7955)
>sp|Q9D824|FIP1_MOUSE Pre-mRNA 3'-end-processing factor FIP1 OS=Mus musculus GN=Fip1l1 PE=1 SV=1 Back     alignment and function description
>sp|Q5U317|FIP1_RAT Pre-mRNA 3'-end-processing factor FIP1 OS=Rattus norvegicus GN=Fip1l1 PE=1 SV=1 Back     alignment and function description
>sp|Q6UN15|FIP1_HUMAN Pre-mRNA 3'-end-processing factor FIP1 OS=Homo sapiens GN=FIP1L1 PE=1 SV=1 Back     alignment and function description
>sp|Q5RAA7|FIP1_PONAB Pre-mRNA 3'-end-processing factor FIP1 OS=Pongo abelii GN=FIP1L1 PE=2 SV=1 Back     alignment and function description
>sp|Q09801|FIP1X_SCHPO Pre-mRNA polyadenylation factor fip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC22G7.10 PE=3 SV=1 Back     alignment and function description
>sp|Q6BGR9|FIP1_DEBHA Pre-mRNA polyadenylation factor FIP1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=FIP1 PE=3 SV=2 Back     alignment and function description
>sp|Q6FJ55|FIP1_CANGA Pre-mRNA polyadenylation factor FIP1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=FIP1 PE=3 SV=1 Back     alignment and function description
>sp|Q6C784|FIP1_YARLI Pre-mRNA polyadenylation factor FIP1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=FIP1 PE=3 SV=1 Back     alignment and function description
>sp|Q5AGC1|FIP1_CANAL Pre-mRNA polyadenylation factor FIP1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=FIP1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1048
359484826 1417 PREDICTED: uncharacterized protein LOC10 0.870 0.643 0.460 0.0
224091696 1336 predicted protein [Populus trichocarpa] 0.948 0.744 0.450 0.0
255565011 1365 ATP binding protein, putative [Ricinus c 0.943 0.724 0.415 0.0
449457917 1399 PREDICTED: uncharacterized protein LOC10 0.949 0.711 0.401 1e-171
297793323 1205 hypothetical protein ARALYDRAFT_495910 [ 0.898 0.781 0.412 1e-170
356533011 1316 PREDICTED: uncharacterized protein LOC10 0.910 0.724 0.401 1e-159
147863604 1798 hypothetical protein VITISV_010335 [Viti 0.392 0.228 0.678 1e-140
297743639824 unnamed protein product [Vitis vinifera] 0.464 0.591 0.554 1e-140
224142409 1433 predicted protein [Populus trichocarpa] 0.388 0.284 0.618 1e-130
356554872 1302 PREDICTED: uncharacterized protein LOC10 0.536 0.431 0.457 1e-123
>gi|359484826|ref|XP_002276238.2| PREDICTED: uncharacterized protein LOC100251960 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 522/1134 (46%), Positives = 630/1134 (55%), Gaps = 222/1134 (19%)

Query: 82   DGEFTDNDNDVKVKFDIEEANNGISNDDDVPGIEIPGISQNSVENS-----EHQNRNEGE 136
            D +F + D    V FDIEE + G + D  +  I IPG+S      S     E QNR +  
Sbjct: 157  DVDFMEKD----VNFDIEEVD-GEAGDVGLDPI-IPGLSAAPAIPSLDAPVEPQNREKTN 210

Query: 137  AGEEAEDDWE-------SDSEDDLQIVLNEDNHRPMLIDGGG--GDDDDDEDGDPLVIVA 187
                A DD         SDSEDDLQIVLN++NH PM  +  G  G DD+DEDGDPLVIVA
Sbjct: 211  V--VARDDASVQGDDWDSDSEDDLQIVLNDNNHGPMAAERNGVMGSDDEDEDGDPLVIVA 268

Query: 188  DADASNHQGLMVEEQEWGGDDAPAQMGEGGAEKKEGTGERANGAAASAATAAAAA--KIG 245
            D D ++     +EEQEWG D A               GER  GA A+    A A   KIG
Sbjct: 269  DGDQTHPP---LEEQEWGEDTAV-------------DGERKEGADAAKVNGAIAGPPKIG 312

Query: 246  YSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPA 305
            YS+H  YH P+HSQFKYVRPGAAPIPG+A  V  G PGQVRPL N+GP  GRGRGDWRPA
Sbjct: 313  YSSH-GYH-PFHSQFKYVRPGAAPIPGAAAVVPGGTPGQVRPLANIGPVPGRGRGDWRPA 370

Query: 306  GMKTAPPMQKGFHPGFGMSASGVNMAGRG----LEFTLPSHKTIFEVDIDGFEEKPWKYP 361
            G+K APPMQK FH GFG  A G NMAGRG    LEFTLPSHKTIF+VDID FEEKPW++P
Sbjct: 371  GIKNAPPMQKNFHSGFGAPAWGGNMAGRGFGGGLEFTLPSHKTIFDVDIDSFEEKPWRHP 430

Query: 362  GVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQSKIRVYESGRDQ-------------- 407
            GVDI+DFFNFG NEESWK YCKQLEQ RLE TMQ+KIRVYESGR +              
Sbjct: 431  GVDISDFFNFGFNEESWKQYCKQLEQLRLEATMQTKIRVYESGRTEQEYDPDLPPELAAA 490

Query: 408  ----------------------------------PTGRAIQVEGGSGERLPSIDTRPPRI 433
                                              PTGRAIQVEGG GERLPS+DTRPPR+
Sbjct: 491  VGIHDVSAENGNLGRADVGPSDLAKASARVRPPIPTGRAIQVEGGCGERLPSVDTRPPRV 550

Query: 434  RDSDAIIEIVCQDSVDDDSSAGNGD---RDNDLPREDRRGENDGAEDEMGPVDTEYFDGF 490
            RDSDAIIEI  Q S+DDDS  GNG     DNDLPRED R  N+  ED+    DTEYFD F
Sbjct: 551  RDSDAIIEITLQGSLDDDSPTGNGAPEPPDNDLPREDLRVGNE-VEDDAAQEDTEYFDSF 609

Query: 491  REAYDSRNRELVRHEAPFMNVAHDNIPEGNGLLPFPPEAPLRYRPGSRGPTPKYPGENIG 550
               Y  RNRELV   APFMN   D++P G+G+LPFPPEAP++YRPGSRG  P +PG N G
Sbjct: 610  STTYSGRNRELVGRSAPFMNSLRDDMPGGDGILPFPPEAPVQYRPGSRGQDPVHPGGNFG 669

Query: 551  TSHEQRRRPGRTGDRSPRMTPSQSPQIRKFHDNQDEESVESMEGKHSPLSSPVIVRDARE 610
            T HE      R   +SP MTP QS +  +F D+Q EESVESM+ K    SSPV V   RE
Sbjct: 670  TPHED-----RAHGKSPHMTPIQSTRDNRFLDSQKEESVESMDVK-GMTSSPVRVAPPRE 723

Query: 611  LSVEHKDAVHDELWREGDEEVM--QDRRSTRMGSMKKHPEENEQSFRRKDREGR------ 662
             SVE KDA+   +        M  ++  S  M S     +EN   F +K +         
Sbjct: 724  PSVEKKDALDGGIVLADGTSGMEREELTSNTMTSTDALKDENLIPFGKKQKLSSRVEQPP 783

Query: 663  -QEMERNRMVAIGREGSHPRRDFDPSLTHDMQMKPEGFDRRKERENSDGVWQRREDEPYS 721
             QE++ +  +   R   + +   + S   D+Q   +G +   E    DG   R  +   S
Sbjct: 784  PQELDGDEDLKATRSSENSKARSESS--RDLQKWHDGGE---EEVIEDGSSVRMGN---S 835

Query: 722  RKNRIEDTRKREREHLDEIGARHRGKARESERIDRDEYLHSRKQLDNGSYRPHYDKDASS 781
            +++  ED +   R+  D  G +   ++R   +   D Y H R      ++  H   D+  
Sbjct: 836  KRHLDEDEQSFRRKDRD--GRQEMERSRMVVKGREDTYPH-RDWDSIPNHHSHVKTDSFD 892

Query: 782  RHRERDDSLKSRYEMVDDYISKRRKDDEYVRR------------------DHAEKDEILH 823
            R +ERD S    ++  DD +  RR   E  R+                  + + KDE+LH
Sbjct: 893  RRKERDSS-DGGWQRRDDDLHGRRIRPEDARKQERGDEMGSRHRSKVRESERSNKDELLH 951

Query: 824  -----------GHRDL-TSRRKRERDDILDQRRREDQQRIRENFDDHHPVRHKDENWSQR 871
                       GH+D     R RERDD L  R          N DD H  R KDE + +R
Sbjct: 952  SRKLLDNGSWRGHQDKDMGSRHRERDDNLKSR--------YGNLDDLHGKRRKDEEYLRR 1003

Query: 872  ERGE--------------RQRERED----------------------------------- 882
            +  E              R+RER+D                                   
Sbjct: 1004 DHAEKEETLHSHRESASRRKRERDDVLDQRKRDDQPRIRDNLDDHHSVRHKDEGWMQRER 1063

Query: 883  ---------WHRLK-PHEEILSKREREEGRGAVRSGRSSEDRAWVGHARVKDEYKGSDKE 932
                     WHRL+ PHEE LSKREREEGRGAVRSGR +ED+AWV HAR KDEYKGSDK+
Sbjct: 1064 GERQREREEWHRLRQPHEENLSKREREEGRGAVRSGRGAEDKAWVSHARGKDEYKGSDKD 1123

Query: 933  YQVKDTVRHSEQLKRRERIEDESRPPHRGREDVYARGNQISNEDRKSRQERSGTRNDRSA 992
            YQ KDT RHSEQ KRR+R+EDES   HRGREDVYARG+Q SNE+R+SRQERS  RND S+
Sbjct: 1124 YQYKDTGRHSEQPKRRDRVEDESFSHHRGREDVYARGSQFSNEERRSRQERSSARNDHSS 1183

Query: 993  NTSDNNRVNEKKHKESSRKNRESEVGNHNSLVASKRNQEDQSGHVSEMVCSIDT 1046
            N SD+ RV++KKHKE++RKN+ESE  + ++L  SKRNQED +   +E V S  T
Sbjct: 1184 NASDHQRVHDKKHKENTRKNKESEGADISTLGPSKRNQEDHNSQRNETVISKGT 1237




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091696|ref|XP_002309330.1| predicted protein [Populus trichocarpa] gi|222855306|gb|EEE92853.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255565011|ref|XP_002523498.1| ATP binding protein, putative [Ricinus communis] gi|223537205|gb|EEF38837.1| ATP binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449457917|ref|XP_004146694.1| PREDICTED: uncharacterized protein LOC101212971 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297793323|ref|XP_002864546.1| hypothetical protein ARALYDRAFT_495910 [Arabidopsis lyrata subsp. lyrata] gi|297310381|gb|EFH40805.1| hypothetical protein ARALYDRAFT_495910 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356533011|ref|XP_003535062.1| PREDICTED: uncharacterized protein LOC100803769 [Glycine max] Back     alignment and taxonomy information
>gi|147863604|emb|CAN81922.1| hypothetical protein VITISV_010335 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297743639|emb|CBI36522.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224142409|ref|XP_002324551.1| predicted protein [Populus trichocarpa] gi|222865985|gb|EEF03116.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356554872|ref|XP_003545766.1| PREDICTED: uncharacterized protein LOC100799266 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1048
TAIR|locus:2155806 1196 FIP1[V] "homolog of yeast FIP1 0.721 0.632 0.387 1.7e-128
DICTYBASE|DDB_G0288797560 fip1l1 "cleavage and polyadeny 0.126 0.237 0.354 5.1e-21
FB|FBgn0031273826 CG2839 [Drosophila melanogaste 0.428 0.543 0.223 2.4e-15
UNIPROTKB|E1BWP4580 Gga.5511 "Uncharacterized prot 0.395 0.715 0.238 4.7e-15
FB|FBgn0037255701 Fip1 [Drosophila melanogaster 0.076 0.114 0.385 3.6e-14
MGI|MGI:1914149581 Fip1l1 "FIP1 like 1 (S. cerevi 0.384 0.693 0.250 1.5e-13
RGD|1309336536 Fip1l1 "FIP1 like 1 (S. cerevi 0.075 0.147 0.4 2.1e-13
UNIPROTKB|Q5U317536 Fip1l1 "Pre-mRNA 3'-end-proces 0.075 0.147 0.4 2.1e-13
RGD|1307729 1727 Zc3h13 "zinc finger CCCH type 0.520 0.316 0.233 2.5e-13
ZFIN|ZDB-GENE-041010-138570 fip1l1b "FIP1 like 1b (S. cere 0.063 0.117 0.394 3.9e-13
TAIR|locus:2155806 FIP1[V] "homolog of yeast FIP1 [V]" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1261 (449.0 bits), Expect = 1.7e-128, P = 1.7e-128
 Identities = 322/832 (38%), Positives = 445/832 (53%)

Query:   243 KIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDW 302
             K GYS+H  YH P+HSQFKYVRPGAAPIPG A +V     GQVRP  N+GP AGRGRGDW
Sbjct:   240 KAGYSSH-GYH-PFHSQFKYVRPGAAPIPGGAASVGGPSSGQVRPPANLGPMAGRGRGDW 297

Query:   303 RPAGMKTAPPMQKGFHPGFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPG 362
             RP GM+ A   QKGFH  +G      N AGRGL+FTLPSHKTIFEVDID FEEKPW+YPG
Sbjct:   298 RPLGMRNASAAQKGFHQPWGS-----NTAGRGLDFTLPSHKTIFEVDIDSFEEKPWRYPG 352

Query:   363 VDITDFFNFGLNEESWKDYCKQLEQHRLETTMQSKIRVYESGR-DQPTGRAIQVE----- 416
             V++TD+FNFGLNEESWKDYCKQL+QHR++TTMQS+IRVYESGR DQ     +  E     
Sbjct:   353 VEMTDYFNFGLNEESWKDYCKQLDQHRIQTTMQSRIRVYESGRTDQGYDPDLPPELAAAT 412

Query:   417 GGSGERLPSID-TRPPRIRDSDAIIEIVCQDSVDDDS----SAGNGDRDNDLPREDRRGE 471
             G  G  + S +  +P  ++   A +    + ++          G+G+R   LP  D R  
Sbjct:   413 GAQGVPVDSSNLVKPDSVQGDSAKVPANVRPTLPPGRPIPVETGSGER---LPSIDTRAP 469

Query:   472 NDGAEDEMGPVDTEYFDGFREAYDSRN-RELVRHEAPFMNVAHDNIPEGNGLLPFPPEAP 530
                  D +  ++    D   +     N  +      P  NV  +     N     P    
Sbjct:   470 RMRDLDAI--IEIVCQDSHEDEPSGENGTDQADSSLPGENVPVETSYVNNKR---PDTES 524

Query:   531 LRYRPGSRGPTP---KYPGENIGTSHEQR---RRPGRTGDRSPRMTPSQSPQIRKFHDNQ 584
               + P    P     K   + I  S +     R     GDR  R +      +      +
Sbjct:   525 AEHSPAQDEPHKNLLKKQDDEISRSTDSGQSFRSSSPVGDRGTRSSSVDREDVGG-EAGK 583

Query:   585 DEESVESMEGKHSPLSSPVIVRDARELSVEH-------KDAVHDELWREGDEEVMQDRRS 637
             D E  E ++   +   S V   D  E   E        +   H +  +E  E+V+QD+ S
Sbjct:   584 DAEMGEELKMSFTSPQSAVQEDDGGESKTERSSESSKARSGSHRDFQQE--EDVIQDKHS 641

Query:   638 TRMGSMKKHPEENEQSFRRKDREGRQEMERNRMVAIG-REGSHPRRDFDPSLTHDMQMKP 696
             +R  + +K  + N     RK+++  +EMER R  + G RE S+P  + D +  + +  + 
Sbjct:   642 SRPANNRKQYDNNAPHQSRKNQDRGKEMERTRAASKGGRENSNPHMELDSTYIYSIASR- 700

Query:   697 EGFDRRKERENSDGVWQRREDEPYSRKNRIEDTRKREREHLDEIGARHRGKARESERIDR 756
             E FD+RKER+    VW+R+ED+PYSR+   E +RKR+RE  D+ G R RGK RE+E   +
Sbjct:   701 EDFDKRKERDVDGAVWRRKEDDPYSRRGGDEGSRKRDRE--DDPGFRQRGKMRENEIRSK 758

Query:   757 DEYLHSRKQLDNGSYRPHYDKDASSRHRERDDSLKSRYEMVDDYISKRRKDDEYVRRDHA 816
             D+ + SRK +D                   D  +++ YE  DD+I+KRRKD+EY+RR   
Sbjct:   759 DDQVPSRKHMD-------------------DAGMRNIYEP-DDHINKRRKDEEYLRRSRP 798

Query:   817 EKDEILHGHRDLTSRRKXXXXXXXXXXXXXXXXXXXXNFDDHHPVRHKDENWSXXXXXXX 876
             EK+EI +G R+  SR K                    +FDDH  +R +D+ +        
Sbjct:   799 EKNEISYGQRESMSRVKRERDDRLEHQKRDVQHKIRDDFDDHGSLRQRDDIYMQRDGNER 858

Query:   877 XXXXXDWHRLK-PHEEILSKREREEGRGAVRSGRSSEDRAWVGHARVKDEYKGSDKEYQV 935
                     +LK PHE+ +S R RE  + AVR  R SEDR+    +R+KDEYK SDKE+  
Sbjct:   859 LRERDVLDKLKLPHEDGISARGRER-QVAVRGHRGSEDRS----SRMKDEYKASDKEHVT 913

Query:   936 KDTVRHSEQLKRRERIEDESRPPHRGREDVYARGNQISNEDRKSRQERSGTRNDRSANTS 995
             KDT+RH++Q KRR+   +ES   HRG ED  AR + I N ++K RQER+G + D+  +T 
Sbjct:   914 KDTLRHAKQTKRRDYPGEESSSHHRGHEDFSARTDNIVNNEKKPRQERTGAKIDKFIDTL 973

Query:   996 DNNRVNEKKHKESSRKNRESEVGNHNSLVASKRNQEDQSGHVSEMVCSIDTR 1047
             D  R+ ++KHK+S RK +E   G   SL  SK+ +++ S  V+    + D R
Sbjct:   974 DGQRLQDRKHKDSRRKIKEQREGTE-SL--SKQGEQNGSSVVTGSKGTNDAR 1022


GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0003723 "RNA binding" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0006397 "mRNA processing" evidence=RCA
GO:0008284 "positive regulation of cell proliferation" evidence=RCA
GO:0009630 "gravitropism" evidence=RCA
DICTYBASE|DDB_G0288797 fip1l1 "cleavage and polyadenylation specificity factor FIP1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0031273 CG2839 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E1BWP4 Gga.5511 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0037255 Fip1 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
MGI|MGI:1914149 Fip1l1 "FIP1 like 1 (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1309336 Fip1l1 "FIP1 like 1 (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5U317 Fip1l1 "Pre-mRNA 3'-end-processing factor FIP1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|1307729 Zc3h13 "zinc finger CCCH type containing 13" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041010-138 fip1l1b "FIP1 like 1b (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1048
pfam0518245 pfam05182, Fip1, Fip1 motif 6e-20
COG5213266 COG5213, FIP1, Polyadenylation factor I complex, s 3e-08
PRK12678 672 PRK12678, PRK12678, transcription termination fact 2e-04
TIGR00934 800 TIGR00934, 2a38euk, potassium uptake protein, Trk 4e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.002
PRK13875440 PRK13875, PRK13875, conjugal transfer protein TrbL 0.002
>gnl|CDD|191218 pfam05182, Fip1, Fip1 motif Back     alignment and domain information
 Score = 83.4 bits (207), Expect = 6e-20
 Identities = 27/45 (60%), Positives = 37/45 (82%)

Query: 346 FEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRL 390
           F+ D++ FEEKPW+ PG DI+D+FN+G NEE+WK YCK+ E+ RL
Sbjct: 1   FDYDLESFEEKPWRKPGADISDYFNYGFNEETWKLYCKKQERLRL 45


This short motif is about 40 amino acids in length. In the Fip1 protein that is a component of a yeast pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase. This region of Fip1 is needed for the interaction with the Th1 subunit of the complex and for specific polyadenylation of the cleaved mRNA precursor. Length = 45

>gnl|CDD|227538 COG5213, FIP1, Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional Back     alignment and domain information
>gnl|CDD|130009 TIGR00934, 2a38euk, potassium uptake protein, Trk family Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|237537 PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1048
KOG1049538 consensus Polyadenylation factor I complex, subuni 100.0
PF0518245 Fip1: Fip1 motif; InterPro: IPR007854 This short m 99.9
COG5213266 FIP1 Polyadenylation factor I complex, subunit FIP 99.84
KOG09211282 consensus Dosage compensation complex, subunit MLE 83.19
>KOG1049 consensus Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification] Back     alignment and domain information
Probab=100.00  E-value=4.1e-41  Score=369.88  Aligned_cols=455  Identities=22%  Similarity=0.236  Sum_probs=294.4

Q ss_pred             ccCCcccccccCCCccCceEEeccCCCCCccccCCCCCCCCCCCCCceEEEecCCCCCccCcchhhcccCCCCCcccCCC
Q 001594          136 EAGEEAEDDWESDSEDDLQIVLNEDNHRPMLIDGGGGDDDDDEDGDPLVIVADADASNHQGLMVEEQEWGGDDAPAQMGE  215 (1048)
Q Consensus       136 ~~~~~~~ddWdSDSeDdlqiVlNd~~~~p~~~~r~~gdddddeDgd~lvivadg~~~~~~~~~~Ee~~Wg~~~a~~~~G~  215 (1048)
                      .+.++.++.|+.|.|+.+++|++.+.-+.|+..-   |-+|.+|++.++||++.+.+    ..+++++|.++.  ..-|.
T Consensus        24 ~~e~~~~~~e~~d~ee~~~~~~p~e~~~~~~~~~---~~~d~dDd~~~~~~~e~d~~----~~d~~s~~~~d~--~~~~~   94 (538)
T KOG1049|consen   24 EDEAETGASEDPDIEERVKSVSPGESKKFDVVAD---DSDDCDDDDEEMESLEPDPE----SLDSDSDDDEDS--SLKDE   94 (538)
T ss_pred             ccccccccccCccHHHhhcccCCccccccccccc---ccccCCchhhhhccCCCCcc----cccccccchhcc--ccCCc
Confidence            4556778899999999999999999876554211   12444566667777765555    789999998871  11111


Q ss_pred             CCcccccCcccccCcchhhhhhhcccccccccCCcccCCCCCCcceeeCCCCCCCCCCcccCCCCCCCccCCCccCCCCC
Q 001594          216 GGAEKKEGTGERANGAAASAATAAAAAKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAA  295 (1048)
Q Consensus       216 ~gaerk~ggge~~~~~~~~~g~a~~~pkiGys~~g~~~hp~HsqfKYVRPga~~~pga~~~~~~g~pgq~rp~~~~~~~a  295 (1048)
                      ++        .+ .     ...++                     |||.++.+..+++...+...+.+|+          
T Consensus        95 ~~--------~~-~-----~~~~~---------------------k~~~~~~a~~~~~~~~v~i~t~~~~----------  129 (538)
T KOG1049|consen   95 DD--------VA-V-----DESAV---------------------KTSDDQEASEGSSDQNVTIRTVKAT----------  129 (538)
T ss_pred             cc--------cc-c-----ccccc---------------------cccCccccccCCCcceeeecccccc----------
Confidence            11        11 0     00000                     8999999999998888777777766          


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCccccccCCCCCcceeecCCCcCCCCCCCCCCCCcccccCCCCH
Q 001594          296 GRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNE  375 (1048)
Q Consensus       296 GrgrGdWrp~g~k~~~~~~k~fh~G~g~~~~G~~~aGrG~eF~lp~~k~IfdvDiD~~eeKPWRkPGADISDYFNYGFnE  375 (1048)
                                   .+++.+|++|.     +|.-.+.|..      ...+||+||||.|++||||+|||||||||||||||
T Consensus       130 -------------~~~a~~kg~~~-----~~dld~~g~i------n~v~I~evDldsfEdKPWRkPGADiSDYFNYGFNE  185 (538)
T KOG1049|consen  130 -------------NKSAAPKGKMS-----QVDLDTPGTI------NGVPIFEVDLDSFEDKPWRKPGADISDYFNYGFNE  185 (538)
T ss_pred             -------------ccccccccCcc-----cccccCCccc------CCccceeecHHHhccCcccCCCccchhhhccccCH
Confidence                         12223565653     3443333333      22389999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhcchhhhhhhccCC---CCCCCceeeecCCCCCCCCCCCCCCCCcCCCC-CceEEeeccCccCC
Q 001594          376 ESWKDYCKQLEQHRLETTMQSKIRVYESGR---DQPTGRAIQVEGGSGERLPSIDTRPPRIRDSD-AIIEIVCQDSVDDD  451 (1048)
Q Consensus       376 ~TWk~Yc~kq~qlR~E~tmqsKI~~yEsg~---~lptGRaIQVEgg~geR~PS~D~R~PR~rDSD-~IIeIv~qdS~Dd~  451 (1048)
                      +||++||++|++||.+|++...+.+++..+   .+++.-.||..+    -.|.+       .... +-..++|.++.-- 
T Consensus       186 eTWk~YC~rQkrlrie~~~~~~~~~~e~~r~~~~~~~~l~~q~~g----~~p~~-------~~ts~~~~~~~~~~~~~~-  253 (538)
T KOG1049|consen  186 ETWKAYCERQKRLRIEFAGGGLERTTEPLRRQRDLFGELKIQIPG----PGPVG-------NLTSRTSVGARGIDSNQR-  253 (538)
T ss_pred             HHHHHHHHHHhhhhhhhcccccccccccccccccCcchhhhccCC----CCCcc-------ccCCccccccccCCCCCC-
Confidence            999999999999999999988888887654   344444444332    11111       0000 0111112111110 


Q ss_pred             CCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccccccccchhhhhhhhccccccccccccCCCCCCCCCCCCCCCC--
Q 001594          452 SSAGNGDRDNDLPREDRRGENDGAEDEMGPVDTEYFDGFREAYDSRNRELVRHEAPFMNVAHDNIPEGNGLLPFPPEA--  529 (1048)
Q Consensus       452 ~s~~n~~q~n~~~~~d~r~~~~~~e~~M~~~~~ey~~~f~q~y~~r~~e~~gr~~p~~ns~~~n~~~gd~~lp~~~~~--  529 (1048)
                                                .++-+.+.+...-...+     .-..+..|+.|+-..++-.+++..+..++.  
T Consensus       254 --------------------------~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~r~g~~~~~~~~~~~p  302 (538)
T KOG1049|consen  254 --------------------------PANDVPPSGGGRPLMSV-----TGSRPAEPSSNSQAPGARSGSGEPSGMSEPPP  302 (538)
T ss_pred             --------------------------CCCCCCCCCCCcccccc-----cCCcCcCCCCCccCccccCCCCCCCCCCCCCC
Confidence                                      00000011111101111     111345566666555555555543333332  


Q ss_pred             -----CCCCCCCCCCCCCCCCCCCCCCchhhccCCCCCCCCCCCCCCCCCchhhcccccchhhhhhhccCCCCCC-CCCc
Q 001594          530 -----PLRYRPGSRGPTPKYPGENIGTSHEQRRRPGRTGDRSPRMTPSQSPQIRKFHDNQDEESVESMEGKHSPL-SSPV  603 (1048)
Q Consensus       530 -----p~~~r~gsrg~~~~~~g~~~gsph~~r~~~~r~~~~Sp~~tP~Q~~~~k~~~d~q~eEs~eSmdgkhsp~-sSP~  603 (1048)
                           |-++....-|..++-| .++          -++....++.+|.|.......|..+.|+...|.++..|.. ..|.
T Consensus       303 ~~~a~p~~~~~~~~~~~~sp~-~~~----------t~Pg~~~ap~~p~~~~~~p~s~g~~~e~~~~s~~~~~s~~~~p~g  371 (538)
T KOG1049|consen  303 SMEAGPSQKERLPPGPEESPP-SNE----------TAPGASEAPSSPGDSGPPPSSLGPNEESDDYSTESGKSARTDPPG  371 (538)
T ss_pred             CcCCCCChhhccCCCcCCCCC-cCC----------CCCCcccCCCCCCCCCCCccccCcCCCCCCcccccccccccCCCc
Confidence                 2222222223222211 111          1345566777888888888888888888888877777765 6666


Q ss_pred             ccccccccccccccc-----------------------------c---------cccc-----ccc-C-cchhhcccccc
Q 001594          604 IVRDARELSVEHKDA-----------------------------V---------HDEL-----WRE-G-DEEVMQDRRST  638 (1048)
Q Consensus       604 ~v~dare~S~e~kD~-----------------------------~---------kDqk-----~~d-~-eEeV~qD~~S~  638 (1048)
                      .|+.... ++--.+.                             +         ++.+     .++ + +|-|+++++|.
T Consensus       372 ~~~~pp~-~~h~~~~~~~s~~~~~~~~~~~m~~~~~~~~~~~r~~~rs~~~r~~~~~s~~~~~~rd~~~~~~~~~~~~s~  450 (538)
T KOG1049|consen  372 EVRPPPQ-SAHLAAPEGPSPKRGESSPDMYMRHRSPHSRSRDRDNGRSGYRRRSRSRSPTRDPGRDKKPGELVGLGRDSS  450 (538)
T ss_pred             ccCCCcc-ccccccCCCCCCCccccCccccccCCCcccccccccccccchhhhhhcccCCCCcccCCCCCcccccccccC
Confidence            6666533 2221111                             1         0000     112 2 79999999999


Q ss_pred             cCCCCCCCCCccchhhhhhhhhhhHHHhhhhhhhc-ccCCCCCCCCCCCCCcccccCCCCCccchhhccCCccccccccc
Q 001594          639 RMGSMKKHPEENEQSFRRKDREGRQEMERNRMVAI-GREGSHPRRDFDPSLTHDMQMKPEGFDRRKERENSDGVWQRRED  717 (1048)
Q Consensus       639 r~g~~rrh~d~~e~~~~RKdrD~rqemER~r~~~~-gRe~syp~rd~dp~~~~~~~~~~~~~Dr~kere~~d~~Wqrred  717 (1048)
                      +.-.+++|...+.....||.+|.-.||||.|+.+. +++..-+||-||-..... ..+.+.|++.|+.+.....|..+..
T Consensus       451 ~~~~~~~~~~~~~~~~~rk~~d~~REr~~rr~~~~~~~d~~~~~r~~~~~~e~s-~~r~~~~~kskr~~~~~~~~s~~~~  529 (538)
T KOG1049|consen  451 KRWRNGPPRTLERDETSRKKVDRDREREHRRKESSVDKDRHREHRRWDENEESS-SGRREDHSKSKRSGTHLEEYSSRSS  529 (538)
T ss_pred             hhhhccCCCccccccccccccchhhHHHHHHhhhccchhhcchhhhhhhccccc-cccchhcchhhhccccchhhccCCC
Confidence            99999999999999999999999999999999998 788889999999887666 6678999999999999999999999


Q ss_pred             Ccccccc
Q 001594          718 EPYSRKN  724 (1048)
Q Consensus       718 d~~~rr~  724 (1048)
                      ..++++.
T Consensus       530 ~~e~~~~  536 (538)
T KOG1049|consen  530 FDESQRN  536 (538)
T ss_pred             ccccccc
Confidence            9998875



>PF05182 Fip1: Fip1 motif; InterPro: IPR007854 This short motif is about 40 amino acids in length and is found in the Fip1 protein that is a component of a Saccharomyces cerevisiae pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase [] Back     alignment and domain information
>COG5213 FIP1 Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification] Back     alignment and domain information
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1048
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 47.2 bits (111), Expect = 3e-05
 Identities = 88/614 (14%), Positives = 156/614 (25%), Gaps = 248/614 (40%)

Query: 370 NFGLNEESWKDYCKQ--------LEQH-RLETTMQ--SKIRVYESGRDQP---------- 408
           N+       K   +Q        +EQ  RL    Q  +K  V    R QP          
Sbjct: 90  NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS---RLQPYLKLRQALLE 146

Query: 409 --TGRAIQVEG--GSGE--------RLPSIDTRPP---------RIRDSDAIIE------ 441
               + + ++G  GSG+            +  +                + ++E      
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206

Query: 442 --IVCQDSVDDDSSAGNGDRDNDLPREDRR------GEN-----DGAEDEMGPVDTEYFD 488
             I    +   D S+    R + +  E RR       EN        ++         F+
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN---AKAWNAFN 263

Query: 489 G---------------FREAYDSRNRELVRHEAPFMNVAHDNIPEGNGLL---------P 524
                           F  A  + +  L  H             E   LL          
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL------TPDEVKSLLLKYLDCRPQD 317

Query: 525 FPPEA----PLRYRPGSRGPTPKYPGENIGTSHEQRRRPGRTGDRSPRMTPSQSPQIRKF 580
            P E     P R                I  S   R       D    +   +   I   
Sbjct: 318 LPREVLTTNPRRL-------------SIIAES--IRDGLATW-DNWKHVNCDKLTTII-- 359

Query: 581 HDNQDEESVESMEGKHSPLSSPVIVRDA-RELSVEHKDA-----VHDELWREGDEEVMQD 634
                E S+  +E        P   R     LSV    A     +   +W +  +  +  
Sbjct: 360 -----ESSLNVLE--------PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406

Query: 635 ------RRSTRMGSMKKHPEEN-------EQSFRRKDREGRQEMERNRMVAIGREGSHPR 681
                 + S     ++K P+E+           + K  E    + R  +V    +  +  
Sbjct: 407 VVNKLHKYS----LVEKQPKESTISIPSIYLELKVK-LENEYALHR-SIV----DHYNIP 456

Query: 682 RDFDPSLTHDMQMKPEGFDRRKERENSDGVWQRREDEPYSRKNRIEDTRKREREHLDEIG 741
           + FD     D+                D  +       YS              H+    
Sbjct: 457 KTFDS---DDLIPPYL-----------DQYF-------YS--------------HI---- 477

Query: 742 ARHRGKARESERID--RDEYLH----SRK-------------------QLDNGSYRPHYD 776
             H       ER+   R  +L      +K                   QL    Y+P+  
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF--YKPYIC 535

Query: 777 KDASSRHRERDDSLKSRYEMVDDYISKRRKDDEYVRRDHAEKDEILHGHRDLTSRR-KRE 835
            +     R           +V+  +       +++ +   E++ I   + DL       E
Sbjct: 536 DNDPKYER-----------LVNAIL-------DFLPK--IEENLICSKYTDLLRIALMAE 575

Query: 836 RDDILDQRRREDQQ 849
            + I ++  ++ Q+
Sbjct: 576 DEAIFEEAHKQVQR 589


Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00