Citrus Sinensis ID: 001594

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------105

MEDDDEFGDLYTDVLRPLSAASQSPHQTSPAAPTSLHRPIDLDLNLKSNDHPASAPNSTPPHTLAPTPPLPSFHAPPRADTDGEFTDNDNDVKVKFDIEEANNGISNDDDVPGIEIPGISQNSVENSEHQNRNEGEAGEEAEDDWESDSEDDLQIVLNEDNHRPMLIDGGGGDDDDDEDGDPLVIVADADASNHQGLMVEEQEWGGDDAPAQMGEGGAEKKEGTGERANGAAASAATAAAAAKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQSKIRVYESGRDQPTGRAIQVEGGSGERLPSIDTRPPRIRDSDAIIEIVCQDSVDDDSSAGNGDRDNDLPREDRRGENDGAEDEMGPVDTEYFDGFREAYDSRNRELVRHEAPFMNVAHDNIPEGNGLLPFPPEAPLRYRPGSRGPTPKYPGENIGTSHEQRRRPGRTGDRSPRMTPSQSPQIRKFHDNQDEESVESMEGKHSPLSSPVIVRDARELSVEHKDAVHDELWREGDEEVMQDRRSTRMGSMKKHPEENEQSFRRKDREGRQEMERNRMVAIGREGSHPRRDFDPSLTHDMQMKPEGFDRRKERENSDGVWQRREDEPYSRKNRIEDTRKREREHLDEIGARHRGKARESERIDRDEYLHSRKQLDNGSYRPHYDKDASSRHRERDDSLKSRYEMVDDYISKRRKDDEYVRRDHAEKDEILHGHRDLTSRRKRERDDILDQRRREDQQRIRENFDDHHPVRHKDENWSQRERGERQREREDWHRLKPHEEILSKREREEGRGAVRSGRSSEDRAWVGHARVKDEYKGSDKEYQVKDTVRHSEQLKRRERIEDESRPPHRGREDVYARGNQISNEDRKSRQERSGTRNDRSANTSDNNRVNEKKHKESSRKNRESEVGNHNSLVASKRNQEDQSGHVSEMVCSIDTRA

cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccEEEEEcccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccHHHHHHcccccccccccccccHHHHHHccccccHHHHHHcccHHHHHHccccccccccccccHHHHHHHHHcHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccccccHHHHHccccccHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHcccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHccccccccccccHHHHcccccccccccccEEEcccccc

ccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccHcccccccccccccccEEEEEcccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccEEEEEcHHHHcccccccccccHHHHHcccccHHHHHHHHHHHHHHHccccccccEEEEccccccccccccEEcccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcHccccccccHHHcccccHHcccccccccccHHHHHHHccccHHHHHHHccHHHHHHHHHHcccccccccccccHHHccccccccccHHHHcccHHcccccccccccHcHcccccHHHcHHHHHccccccHccccHHcHHHHccHHHcccHHccccccccccccccccccHHcccccHHcccccccccHHHHHcHHHHHHHHccccHHHHHccccccHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHcHHHHHHHHHHHHccccHHHHHHHHHHHccccccccccHHHHHHcccHHHHHccccccHHHHcHHHHcccHHHHHHHHHHHHcccccccccccccccccccHHHccccHcccccccccccccHHHHHHHHHHHHHcccccccccccccccccccHcccccccccccccEEcccccc

medddefgdlytdvlrplsaasqsphqtspaaptslhrpidldlnlksndhpasapnstpphtlaptpplpsfhappradtdgeftdndndvkvKFDIEeanngisndddvpgieipgisqnsvensehqnrnegeageeaeddwesdsedDLQIVLnednhrpmlidggggdddddedgdplvIVADadasnhqglmveeqewggddapaqmgeggaekkegtgerangAAASAATAAAAAKIGysnhfayhnpyhsqfkyvrpgaapipgsatavaaggpgqvrplvnmgpaagrgrgdwrpagmktappmqkgfhpgfgmsasgvnmagrgleftlpshktifevdidgfeekpwkypgvditdffnfglneESWKDYCKQLEQHRLETTMQSKIRVyesgrdqptgraiqveggsgerlpsidtrpprirdsdAIIEIVCqdsvdddssagngdrdndlpredrrgendgaedemgpvdteyFDGFREAYDSRNRElvrheapfmnvahdnipegngllpfppeaplryrpgsrgptpkypgenigtsheqrrrpgrtgdrsprmtpsqspqirkfhdnqdeesvesmegkhsplsspvivRDARELSVEHKDAVHDELWREGDEEVMQDRRstrmgsmkkhpeeneqsFRRKDREGRQEMERNRMVAIGregshprrdfdpslthdmqmkpegfdrrkerensdgvwqrredepysrknriEDTRKREREHLDEIGarhrgkareseridrdeylhsrkqldngsyrphydkdassrhrerddslKSRYEMVDDYISkrrkddeyvrrdhaekdeilhghrdltsrrkrerDDILDQRRREDQQRIREnfddhhpvrhkdenwsqreRGERQREredwhrlkpheeiLSKREreegrgavrsgrssedrawvgharvkdeykgsdkeyqvkDTVRHSEQLKrreriedesrpphrgredvyargnqisnedrksrqersgtrndrsantsdnnrvnekkhkessrknresevgnhnslvaskrnqedqsghvsemvcsidtra

MEDDDEFGDLYTDVLRPlsaasqsphqtspaaptslhRPIDLDLNLKSNDHPASAPNSTPPHTLAPTPPLPSFHAPPRADTDGEFTDNDNDVKVKFDIEEAnngisndddvpgIEIPGISQNSVENSEHQNRNEGEAGEEAEDDWESDSEDDLQIVLNEDNHRPMLIDGGGGDDDDDEDGDPLVIVADADASNHQGLMVEEQEWGGDDAPAQMGEGGAEKKEGTGERANGAAASAATAAAAAKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLettmqskirvyesgrdqptgraiqveggsgerlpsidtrpprirdSDAIIEIVCqdsvdddssagngdrdndlpredrrgendgaedemgpvdTEYFDGFREAYDSRNRELVRHEAPFMNVAHDNIPEGNGLLPFPPEAPLRYRPGSRGPtpkypgenigtsheqrrrpgrtgdrsprmtpsqspqirkfhdNQDEESVesmegkhsplsspVIVRDARELSVEHkdavhdelwregdeevmqdrrstrmgsmkkhpeeneqsfrrkdregrqeMERNRMvaigregshprrdfdpslthdmqmkpegfdrrkerensdgvwqrredepysrknriedtrkrerehldeigarhrgkareseridrdeylhsrkqldngsyrphydkdassrhrerddslksryemvddyiskrrkddeyvrrdhaekdeilhghrdltsrrkrerddildqrrredqqrirenfddhhpvrhkdenwsqrergerqreredwhrlkpheeilskrereegrgavrsgrssedrawvgharvkdeykgsdkeyqvkdtvrhseqlkrreriedesrpphrgredvyargnqisnedrksrqersgtrndrsantsdnnrvnekkhkessrknresevgnhnslvaskrnqedqsghvsemvcsidtra

MEDDDEFGDLYTDVLRPLSAASQSPHQTSPAAPTSLHRPIDLDLNLKSNDHPASAPNStpphtlaptpplpSFHAPPRADTDGEFTDNDNDVKVKFDIEEANNGISNDDDVPGIEIPGISQNSVENSEHQNRNegeageeaeddwesdseddLQIVLNEDNHRPMLIdggggdddddedgdPLVIVADADASNHQGLMVEEQEWGGDDAPAQMgeggaekkegtgeRangaaasaataaaaaKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQSKIRVYESGRDQPTGRAIQVEGGSGERLPSIDTRPPRIRDSDAIIEIVCQDSVDDDSSAGNGDRDNDLPREDRRGENDGAEDEMGPVDTEYFDGFREAYDSRNRELVRHEAPFMNVAHDNIPEGNGLLPFPPEAPLRYRPGSRGPTPKYPGENIGTSHEQRRRPGRTGDRSPRMTPSQSPQIRKFHDNQDEESVESMEGKHSPLSSPVIVRDARELSVEHKDAVHDELWREGDEEVMQDRRSTRMGSMKKHPEENEQSFRRKDREGRQEMERNRMVAIGREGSHPRRDFDPSLTHDMQMKPEGFDRRKERENSDGVWQRREDEPYSRKNRIEDTRKREREHLDEIGARHRGKARESERIDRDEYLHSRKQLDNGSYRPHYDKDASSRHRERDDSLKSRYEMVDDYISKRRKDDEYVRRDHAEKDEILHGHRDLTSRRKrerddildqrrredqqrireNFDDHHPVRHKDENWSqrergerqrereDWHRLKPHEEILSKREREEGRGAVRSGRSSEDRAWVGHARVKDEYKGSDKEYQVKDTVRHSEQLKRRERIEDESRPPHRGREDVYARGNQISNEDRKSRQERSGTRNDRSANTSDNNRVNEKKHKESSRKNRESEVGNHNSLVASKRNQEDQSGHVSEMVCSIDTRA

**********************************************************************************************************************************************************************************************************************************************AAAAKIGYSNHFAYHNPYHSQFKYVRPGAAPI*********************************************************VNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRL***********************************************AIIEIVC*****************************************YFDGFR****************FM***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************

***DDEFGDLYTDVL**********************************************************************************************DV**IEI***********************************DLQIVL************************PLVIVAD***************************************************************************************************************************************************EFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCK*****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************

MEDDDEFGDLYTDVLRPLS***************SLHRPIDLDLNLKSND***********HTLAPTPPLPSFHAPPRADTDGEFTDNDNDVKVKFDIEEANNGISNDDDVPGIEIPGISQNS****************************DLQIVLNEDNHRPMLIDGGGGDDDDDEDGDPLVIVADADASNHQGLMVEEQEWGGDDAPAQM***************************AAKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQSKIRVYESGRDQPTGRAIQVEGGSGERLPSIDTRPPRIRDSDAIIEIVCQDSV**************LPREDRRGENDGAEDEMGPVDTEYFDGFREAYDSRNRELVRHEAPFMNVAHDNIPEGNGLLPFPPEAPLRYRPGSRGPTPKYPGENIG*************************************************SSPVIVRDARELSVEHKDAVHDELWREGDE***********************************MERNRMVAIGREGSHPRRDFDPSLTHDMQMKPEGF*********************SRKNRIEDTRKREREHLDEIG************IDRDEYLHSRKQLDNGSYR*****************LKSRYEMVDDYISKRRKDDEYVRRDHAEKDEILHGHRDLTSRRKRERDDILDQRRREDQQRIRENFDDHHPVRHKD****************DWHRLKPHEEILSKR******************AWVGHARVKDEYKGSDKEYQVKDTVRHSEQLKRR*************REDVYARGNQI***********************************************HNSLVAS***********SEMVCSIDTRA

*****EFGDLYTDVLRPLS*********************************************************************DNDVKVKFDIEE*NNGISNDDDVPGI**********************************SEDDLQIVLNED*******************GDPLVIVADADASNHQGLMVEEQEW*GD******************************AAAAAKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGP***RGRGDWRPAGMKTA***QKGFHPGFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQSKIRVYESGRD*P*GRAIQ*EG*SGERLPSIDTRPPRIRDSDAIIEIVCQDS*************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1048	2.2.26 [Sep-21-2011]
Q5XJD3		570	Pre-mRNA 3'-end-processin	no	no	0.063	0.117	0.394	3e-11
Q9D824		581	Pre-mRNA 3'-end-processin	yes	no	0.071	0.129	0.376	6e-11
Q5U317		536	Pre-mRNA 3'-end-processin	yes	no	0.071	0.139	0.376	9e-11
Q6UN15		594	Pre-mRNA 3'-end-processin	no	no	0.084	0.149	0.343	9e-11
Q5RAA7		588	Pre-mRNA 3'-end-processin	yes	no	0.084	0.151	0.343	1e-10
Q09801		344	Pre-mRNA polyadenylation	yes	no	0.044	0.136	0.468	2e-09
Q6BGR9		328	Pre-mRNA polyadenylation	yes	no	0.062	0.201	0.363	6e-08
Q6FJ55		327	Pre-mRNA polyadenylation	yes	no	0.081	0.259	0.340	1e-07
Q6C784		221	Pre-mRNA polyadenylation	yes	no	0.051	0.244	0.462	2e-07
Q5AGC1		326	Pre-mRNA polyadenylation	N/A	no	0.071	0.230	0.367	4e-07

>sp\|Q5XJD3\|FIP1_DANRE Pre-mRNA 3'-end-processing factor FIP1 OS=Danio rerio GN=fip1l1 PE=1 SV=1	Back alignment and function desciption

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 46/71 (64%), Gaps = 4/71 (5%)

Query: 320 GFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWK 379
           G G    GV++   G    +P    + E D++ FEEKPW+ PG D++D+FN+G NE++WK
Sbjct: 140 GAGAKVKGVDLEAPGSINGVP----VLEADMESFEEKPWRKPGADLSDYFNYGFNEDTWK 195

Query: 380 DYCKQLEQHRL 390
            YC++ ++ R+
Sbjct: 196 AYCEKQKRLRM 206

Involved in mRNA processing.
Danio rerio (taxid: 7955)

>sp\|Q9D824\|FIP1_MOUSE Pre-mRNA 3'-end-processing factor FIP1 OS=Mus musculus GN=Fip1l1 PE=1 SV=1	Back alignment and function description

>sp\|Q5U317\|FIP1_RAT Pre-mRNA 3'-end-processing factor FIP1 OS=Rattus norvegicus GN=Fip1l1 PE=1 SV=1	Back alignment and function description

>sp\|Q6UN15\|FIP1_HUMAN Pre-mRNA 3'-end-processing factor FIP1 OS=Homo sapiens GN=FIP1L1 PE=1 SV=1	Back alignment and function description

>sp\|Q5RAA7\|FIP1_PONAB Pre-mRNA 3'-end-processing factor FIP1 OS=Pongo abelii GN=FIP1L1 PE=2 SV=1	Back alignment and function description

>sp\|Q09801\|FIP1X_SCHPO Pre-mRNA polyadenylation factor fip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC22G7.10 PE=3 SV=1	Back alignment and function description

>sp\|Q6BGR9\|FIP1_DEBHA Pre-mRNA polyadenylation factor FIP1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=FIP1 PE=3 SV=2	Back alignment and function description

>sp\|Q6FJ55\|FIP1_CANGA Pre-mRNA polyadenylation factor FIP1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=FIP1 PE=3 SV=1	Back alignment and function description

>sp\|Q6C784\|FIP1_YARLI Pre-mRNA polyadenylation factor FIP1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=FIP1 PE=3 SV=1	Back alignment and function description

>sp\|Q5AGC1\|FIP1_CANAL Pre-mRNA polyadenylation factor FIP1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=FIP1 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1048
359484826		1417	PREDICTED: uncharacterized protein LOC10	0.870	0.643	0.460	0.0
224091696		1336	predicted protein [Populus trichocarpa]	0.948	0.744	0.450	0.0
255565011		1365	ATP binding protein, putative [Ricinus c	0.943	0.724	0.415	0.0
449457917		1399	PREDICTED: uncharacterized protein LOC10	0.949	0.711	0.401	1e-171
297793323		1205	hypothetical protein ARALYDRAFT_495910 [	0.898	0.781	0.412	1e-170
356533011		1316	PREDICTED: uncharacterized protein LOC10	0.910	0.724	0.401	1e-159
147863604		1798	hypothetical protein VITISV_010335 [Viti	0.392	0.228	0.678	1e-140
297743639		824	unnamed protein product [Vitis vinifera]	0.464	0.591	0.554	1e-140
224142409		1433	predicted protein [Populus trichocarpa]	0.388	0.284	0.618	1e-130
356554872		1302	PREDICTED: uncharacterized protein LOC10	0.536	0.431	0.457	1e-123

>gi\|359484826\|ref\|XP_002276238.2\| PREDICTED: uncharacterized protein LOC100251960 [Vitis vinifera]	Back alignment and taxonomy information

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 522/1134 (46%), Positives = 630/1134 (55%), Gaps = 222/1134 (19%)

Query: 82   DGEFTDNDNDVKVKFDIEEANNGISNDDDVPGIEIPGISQNSVENS-----EHQNRNEGE 136
            D +F + D    V FDIEE + G + D  +  I IPG+S      S     E QNR +  
Sbjct: 157  DVDFMEKD----VNFDIEEVD-GEAGDVGLDPI-IPGLSAAPAIPSLDAPVEPQNREKTN 210

Query: 137  AGEEAEDDWE-------SDSEDDLQIVLNEDNHRPMLIDGGG--GDDDDDEDGDPLVIVA 187
                A DD         SDSEDDLQIVLN++NH PM  +  G  G DD+DEDGDPLVIVA
Sbjct: 211  V--VARDDASVQGDDWDSDSEDDLQIVLNDNNHGPMAAERNGVMGSDDEDEDGDPLVIVA 268

Query: 188  DADASNHQGLMVEEQEWGGDDAPAQMGEGGAEKKEGTGERANGAAASAATAAAAA--KIG 245
            D D ++     +EEQEWG D A               GER  GA A+    A A   KIG
Sbjct: 269  DGDQTHPP---LEEQEWGEDTAV-------------DGERKEGADAAKVNGAIAGPPKIG 312

Query: 246  YSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPA 305
            YS+H  YH P+HSQFKYVRPGAAPIPG+A  V  G PGQVRPL N+GP  GRGRGDWRPA
Sbjct: 313  YSSH-GYH-PFHSQFKYVRPGAAPIPGAAAVVPGGTPGQVRPLANIGPVPGRGRGDWRPA 370

Query: 306  GMKTAPPMQKGFHPGFGMSASGVNMAGRG----LEFTLPSHKTIFEVDIDGFEEKPWKYP 361
            G+K APPMQK FH GFG  A G NMAGRG    LEFTLPSHKTIF+VDID FEEKPW++P
Sbjct: 371  GIKNAPPMQKNFHSGFGAPAWGGNMAGRGFGGGLEFTLPSHKTIFDVDIDSFEEKPWRHP 430

Query: 362  GVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQSKIRVYESGRDQ-------------- 407
            GVDI+DFFNFG NEESWK YCKQLEQ RLE TMQ+KIRVYESGR +              
Sbjct: 431  GVDISDFFNFGFNEESWKQYCKQLEQLRLEATMQTKIRVYESGRTEQEYDPDLPPELAAA 490

Query: 408  ----------------------------------PTGRAIQVEGGSGERLPSIDTRPPRI 433
                                              PTGRAIQVEGG GERLPS+DTRPPR+
Sbjct: 491  VGIHDVSAENGNLGRADVGPSDLAKASARVRPPIPTGRAIQVEGGCGERLPSVDTRPPRV 550

Query: 434  RDSDAIIEIVCQDSVDDDSSAGNGD---RDNDLPREDRRGENDGAEDEMGPVDTEYFDGF 490
            RDSDAIIEI  Q S+DDDS  GNG     DNDLPRED R  N+  ED+    DTEYFD F
Sbjct: 551  RDSDAIIEITLQGSLDDDSPTGNGAPEPPDNDLPREDLRVGNE-VEDDAAQEDTEYFDSF 609

Query: 491  REAYDSRNRELVRHEAPFMNVAHDNIPEGNGLLPFPPEAPLRYRPGSRGPTPKYPGENIG 550
               Y  RNRELV   APFMN   D++P G+G+LPFPPEAP++YRPGSRG  P +PG N G
Sbjct: 610  STTYSGRNRELVGRSAPFMNSLRDDMPGGDGILPFPPEAPVQYRPGSRGQDPVHPGGNFG 669

Query: 551  TSHEQRRRPGRTGDRSPRMTPSQSPQIRKFHDNQDEESVESMEGKHSPLSSPVIVRDARE 610
            T HE      R   +SP MTP QS +  +F D+Q EESVESM+ K    SSPV V   RE
Sbjct: 670  TPHED-----RAHGKSPHMTPIQSTRDNRFLDSQKEESVESMDVK-GMTSSPVRVAPPRE 723

Query: 611  LSVEHKDAVHDELWREGDEEVM--QDRRSTRMGSMKKHPEENEQSFRRKDREGR------ 662
             SVE KDA+   +        M  ++  S  M S     +EN   F +K +         
Sbjct: 724  PSVEKKDALDGGIVLADGTSGMEREELTSNTMTSTDALKDENLIPFGKKQKLSSRVEQPP 783

Query: 663  -QEMERNRMVAIGREGSHPRRDFDPSLTHDMQMKPEGFDRRKERENSDGVWQRREDEPYS 721
             QE++ +  +   R   + +   + S   D+Q   +G +   E    DG   R  +   S
Sbjct: 784  PQELDGDEDLKATRSSENSKARSESS--RDLQKWHDGGE---EEVIEDGSSVRMGN---S 835

Query: 722  RKNRIEDTRKREREHLDEIGARHRGKARESERIDRDEYLHSRKQLDNGSYRPHYDKDASS 781
            +++  ED +   R+  D  G +   ++R   +   D Y H R      ++  H   D+  
Sbjct: 836  KRHLDEDEQSFRRKDRD--GRQEMERSRMVVKGREDTYPH-RDWDSIPNHHSHVKTDSFD 892

Query: 782  RHRERDDSLKSRYEMVDDYISKRRKDDEYVRR------------------DHAEKDEILH 823
            R +ERD S    ++  DD +  RR   E  R+                  + + KDE+LH
Sbjct: 893  RRKERDSS-DGGWQRRDDDLHGRRIRPEDARKQERGDEMGSRHRSKVRESERSNKDELLH 951

Query: 824  -----------GHRDL-TSRRKRERDDILDQRRREDQQRIRENFDDHHPVRHKDENWSQR 871
                       GH+D     R RERDD L  R          N DD H  R KDE + +R
Sbjct: 952  SRKLLDNGSWRGHQDKDMGSRHRERDDNLKSR--------YGNLDDLHGKRRKDEEYLRR 1003

Query: 872  ERGE--------------RQRERED----------------------------------- 882
            +  E              R+RER+D                                   
Sbjct: 1004 DHAEKEETLHSHRESASRRKRERDDVLDQRKRDDQPRIRDNLDDHHSVRHKDEGWMQRER 1063

Query: 883  ---------WHRLK-PHEEILSKREREEGRGAVRSGRSSEDRAWVGHARVKDEYKGSDKE 932
                     WHRL+ PHEE LSKREREEGRGAVRSGR +ED+AWV HAR KDEYKGSDK+
Sbjct: 1064 GERQREREEWHRLRQPHEENLSKREREEGRGAVRSGRGAEDKAWVSHARGKDEYKGSDKD 1123

Query: 933  YQVKDTVRHSEQLKRRERIEDESRPPHRGREDVYARGNQISNEDRKSRQERSGTRNDRSA 992
            YQ KDT RHSEQ KRR+R+EDES   HRGREDVYARG+Q SNE+R+SRQERS  RND S+
Sbjct: 1124 YQYKDTGRHSEQPKRRDRVEDESFSHHRGREDVYARGSQFSNEERRSRQERSSARNDHSS 1183

Query: 993  NTSDNNRVNEKKHKESSRKNRESEVGNHNSLVASKRNQEDQSGHVSEMVCSIDT 1046
            N SD+ RV++KKHKE++RKN+ESE  + ++L  SKRNQED +   +E V S  T
Sbjct: 1184 NASDHQRVHDKKHKENTRKNKESEGADISTLGPSKRNQEDHNSQRNETVISKGT 1237

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224091696\|ref\|XP_002309330.1\| predicted protein [Populus trichocarpa] gi\|222855306\|gb\|EEE92853.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255565011\|ref\|XP_002523498.1\| ATP binding protein, putative [Ricinus communis] gi\|223537205\|gb\|EEF38837.1\| ATP binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|449457917\|ref\|XP_004146694.1\| PREDICTED: uncharacterized protein LOC101212971 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297793323\|ref\|XP_002864546.1\| hypothetical protein ARALYDRAFT_495910 [Arabidopsis lyrata subsp. lyrata] gi\|297310381\|gb\|EFH40805.1\| hypothetical protein ARALYDRAFT_495910 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|356533011\|ref\|XP_003535062.1\| PREDICTED: uncharacterized protein LOC100803769 [Glycine max]	Back alignment and taxonomy information

>gi\|147863604\|emb\|CAN81922.1\| hypothetical protein VITISV_010335 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297743639\|emb\|CBI36522.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224142409\|ref\|XP_002324551.1\| predicted protein [Populus trichocarpa] gi\|222865985\|gb\|EEF03116.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356554872\|ref\|XP_003545766.1\| PREDICTED: uncharacterized protein LOC100799266 [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1048
TAIR\|locus:2155806		1196	FIP1[V] "homolog of yeast FIP1	0.721	0.632	0.387	1.7e-128
DICTYBASE\|DDB_G0288797		560	fip1l1 "cleavage and polyadeny	0.126	0.237	0.354	5.1e-21
FB\|FBgn0031273		826	CG2839 [Drosophila melanogaste	0.428	0.543	0.223	2.4e-15
UNIPROTKB\|E1BWP4		580	Gga.5511 "Uncharacterized prot	0.395	0.715	0.238	4.7e-15
FB\|FBgn0037255		701	Fip1 [Drosophila melanogaster	0.076	0.114	0.385	3.6e-14
MGI\|MGI:1914149		581	Fip1l1 "FIP1 like 1 (S. cerevi	0.384	0.693	0.250	1.5e-13
RGD\|1309336		536	Fip1l1 "FIP1 like 1 (S. cerevi	0.075	0.147	0.4	2.1e-13
UNIPROTKB\|Q5U317		536	Fip1l1 "Pre-mRNA 3'-end-proces	0.075	0.147	0.4	2.1e-13
RGD\|1307729		1727	Zc3h13 "zinc finger CCCH type	0.520	0.316	0.233	2.5e-13
ZFIN\|ZDB-GENE-041010-138		570	fip1l1b "FIP1 like 1b (S. cere	0.063	0.117	0.394	3.9e-13

TAIR\|locus:2155806 FIP1[V] "homolog of yeast FIP1 [V]" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1261 (449.0 bits), Expect = 1.7e-128, P = 1.7e-128
 Identities = 322/832 (38%), Positives = 445/832 (53%)

Query:   243 KIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDW 302
             K GYS+H  YH P+HSQFKYVRPGAAPIPG A +V     GQVRP  N+GP AGRGRGDW
Sbjct:   240 KAGYSSH-GYH-PFHSQFKYVRPGAAPIPGGAASVGGPSSGQVRPPANLGPMAGRGRGDW 297

Query:   303 RPAGMKTAPPMQKGFHPGFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPG 362
             RP GM+ A   QKGFH  +G      N AGRGL+FTLPSHKTIFEVDID FEEKPW+YPG
Sbjct:   298 RPLGMRNASAAQKGFHQPWGS-----NTAGRGLDFTLPSHKTIFEVDIDSFEEKPWRYPG 352

Query:   363 VDITDFFNFGLNEESWKDYCKQLEQHRLETTMQSKIRVYESGR-DQPTGRAIQVE----- 416
             V++TD+FNFGLNEESWKDYCKQL+QHR++TTMQS+IRVYESGR DQ     +  E     
Sbjct:   353 VEMTDYFNFGLNEESWKDYCKQLDQHRIQTTMQSRIRVYESGRTDQGYDPDLPPELAAAT 412

Query:   417 GGSGERLPSID-TRPPRIRDSDAIIEIVCQDSVDDDS----SAGNGDRDNDLPREDRRGE 471
             G  G  + S +  +P  ++   A +    + ++          G+G+R   LP  D R  
Sbjct:   413 GAQGVPVDSSNLVKPDSVQGDSAKVPANVRPTLPPGRPIPVETGSGER---LPSIDTRAP 469

Query:   472 NDGAEDEMGPVDTEYFDGFREAYDSRN-RELVRHEAPFMNVAHDNIPEGNGLLPFPPEAP 530
                  D +  ++    D   +     N  +      P  NV  +     N     P    
Sbjct:   470 RMRDLDAI--IEIVCQDSHEDEPSGENGTDQADSSLPGENVPVETSYVNNKR---PDTES 524

Query:   531 LRYRPGSRGPTP---KYPGENIGTSHEQR---RRPGRTGDRSPRMTPSQSPQIRKFHDNQ 584
               + P    P     K   + I  S +     R     GDR  R +      +      +
Sbjct:   525 AEHSPAQDEPHKNLLKKQDDEISRSTDSGQSFRSSSPVGDRGTRSSSVDREDVGG-EAGK 583

Query:   585 DEESVESMEGKHSPLSSPVIVRDARELSVEH-------KDAVHDELWREGDEEVMQDRRS 637
             D E  E ++   +   S V   D  E   E        +   H +  +E  E+V+QD+ S
Sbjct:   584 DAEMGEELKMSFTSPQSAVQEDDGGESKTERSSESSKARSGSHRDFQQE--EDVIQDKHS 641

Query:   638 TRMGSMKKHPEENEQSFRRKDREGRQEMERNRMVAIG-REGSHPRRDFDPSLTHDMQMKP 696
             +R  + +K  + N     RK+++  +EMER R  + G RE S+P  + D +  + +  + 
Sbjct:   642 SRPANNRKQYDNNAPHQSRKNQDRGKEMERTRAASKGGRENSNPHMELDSTYIYSIASR- 700

Query:   697 EGFDRRKERENSDGVWQRREDEPYSRKNRIEDTRKREREHLDEIGARHRGKARESERIDR 756
             E FD+RKER+    VW+R+ED+PYSR+   E +RKR+RE  D+ G R RGK RE+E   +
Sbjct:   701 EDFDKRKERDVDGAVWRRKEDDPYSRRGGDEGSRKRDRE--DDPGFRQRGKMRENEIRSK 758

Query:   757 DEYLHSRKQLDNGSYRPHYDKDASSRHRERDDSLKSRYEMVDDYISKRRKDDEYVRRDHA 816
             D+ + SRK +D                   D  +++ YE  DD+I+KRRKD+EY+RR   
Sbjct:   759 DDQVPSRKHMD-------------------DAGMRNIYEP-DDHINKRRKDEEYLRRSRP 798

Query:   817 EKDEILHGHRDLTSRRKXXXXXXXXXXXXXXXXXXXXNFDDHHPVRHKDENWSXXXXXXX 876
             EK+EI +G R+  SR K                    +FDDH  +R +D+ +        
Sbjct:   799 EKNEISYGQRESMSRVKRERDDRLEHQKRDVQHKIRDDFDDHGSLRQRDDIYMQRDGNER 858

Query:   877 XXXXXDWHRLK-PHEEILSKREREEGRGAVRSGRSSEDRAWVGHARVKDEYKGSDKEYQV 935
                     +LK PHE+ +S R RE  + AVR  R SEDR+    +R+KDEYK SDKE+  
Sbjct:   859 LRERDVLDKLKLPHEDGISARGRER-QVAVRGHRGSEDRS----SRMKDEYKASDKEHVT 913

Query:   936 KDTVRHSEQLKRRERIEDESRPPHRGREDVYARGNQISNEDRKSRQERSGTRNDRSANTS 995
             KDT+RH++Q KRR+   +ES   HRG ED  AR + I N ++K RQER+G + D+  +T 
Sbjct:   914 KDTLRHAKQTKRRDYPGEESSSHHRGHEDFSARTDNIVNNEKKPRQERTGAKIDKFIDTL 973

Query:   996 DNNRVNEKKHKESSRKNRESEVGNHNSLVASKRNQEDQSGHVSEMVCSIDTR 1047
             D  R+ ++KHK+S RK +E   G   SL  SK+ +++ S  V+    + D R
Sbjct:   974 DGQRLQDRKHKDSRRKIKEQREGTE-SL--SKQGEQNGSSVVTGSKGTNDAR 1022

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0003723 "RNA binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006397 "mRNA processing" evidence=RCA

GO:0008284 "positive regulation of cell proliferation" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

DICTYBASE\|DDB_G0288797 fip1l1 "cleavage and polyadenylation specificity factor FIP1" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

FB\|FBgn0031273 CG2839 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BWP4 Gga.5511 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

FB\|FBgn0037255 Fip1 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

MGI\|MGI:1914149 Fip1l1 "FIP1 like 1 (S. cerevisiae)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1309336 Fip1l1 "FIP1 like 1 (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5U317 Fip1l1 "Pre-mRNA 3'-end-processing factor FIP1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

RGD\|1307729 Zc3h13 "zinc finger CCCH type containing 13" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-041010-138 fip1l1b "FIP1 like 1b (S. cerevisiae)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1048
pfam05182		45	pfam05182, Fip1, Fip1 motif	6e-20
COG5213		266	COG5213, FIP1, Polyadenylation factor I complex, s	3e-08
PRK12678		672	PRK12678, PRK12678, transcription termination fact	2e-04
TIGR00934		800	TIGR00934, 2a38euk, potassium uptake protein, Trk	4e-04
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
PRK13875		440	PRK13875, PRK13875, conjugal transfer protein TrbL	0.002

>gnl\|CDD\|191218 pfam05182, Fip1, Fip1 motif	Back alignment and domain information

 Score = 83.4 bits (207), Expect = 6e-20
 Identities = 27/45 (60%), Positives = 37/45 (82%)

Query: 346 FEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRL 390
           F+ D++ FEEKPW+ PG DI+D+FN+G NEE+WK YCK+ E+ RL
Sbjct: 1   FDYDLESFEEKPWRKPGADISDYFNYGFNEETWKLYCKKQERLRL 45

This short motif is about 40 amino acids in length. In the Fip1 protein that is a component of a yeast pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase. This region of Fip1 is needed for the interaction with the Th1 subunit of the complex and for specific polyadenylation of the cleaved mRNA precursor. Length = 45

>gnl\|CDD\|227538 COG5213, FIP1, Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification]	Back alignment and domain information

>gnl\|CDD\|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional	Back alignment and domain information

>gnl\|CDD\|130009 TIGR00934, 2a38euk, potassium uptake protein, Trk family	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|237537 PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1048
KOG1049		538	consensus Polyadenylation factor I complex, subuni	100.0
PF05182		45	Fip1: Fip1 motif; InterPro: IPR007854 This short m	99.9
COG5213		266	FIP1 Polyadenylation factor I complex, subunit FIP	99.84
KOG0921		1282	consensus Dosage compensation complex, subunit MLE	83.19

>KOG1049 consensus Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification]	Back alignment and domain information

Probab=100.00  E-value=4.1e-41  Score=369.88  Aligned_cols=455  Identities=22%  Similarity=0.236  Sum_probs=294.4

Q ss_pred             ccCCcccccccCCCccCceEEeccCCCCCccccCCCCCCCCCCCCCceEEEecCCCCCccCcchhhcccCCCCCcccCCC
Q 001594          136 EAGEEAEDDWESDSEDDLQIVLNEDNHRPMLIDGGGGDDDDDEDGDPLVIVADADASNHQGLMVEEQEWGGDDAPAQMGE  215 (1048)
Q Consensus       136 ~~~~~~~ddWdSDSeDdlqiVlNd~~~~p~~~~r~~gdddddeDgd~lvivadg~~~~~~~~~~Ee~~Wg~~~a~~~~G~  215 (1048)
                      .+.++.++.|+.|.|+.+++|++.+.-+.|+..-   |-+|.+|++.++||++.+.+    ..+++++|.++.  ..-|.
T Consensus        24 ~~e~~~~~~e~~d~ee~~~~~~p~e~~~~~~~~~---~~~d~dDd~~~~~~~e~d~~----~~d~~s~~~~d~--~~~~~   94 (538)
T KOG1049|consen   24 EDEAETGASEDPDIEERVKSVSPGESKKFDVVAD---DSDDCDDDDEEMESLEPDPE----SLDSDSDDDEDS--SLKDE   94 (538)
T ss_pred             ccccccccccCccHHHhhcccCCccccccccccc---ccccCCchhhhhccCCCCcc----cccccccchhcc--ccCCc
Confidence            4556778899999999999999999876554211   12444566667777765555    789999998871  11111


Q ss_pred             CCcccccCcccccCcchhhhhhhcccccccccCCcccCCCCCCcceeeCCCCCCCCCCcccCCCCCCCccCCCccCCCCC
Q 001594          216 GGAEKKEGTGERANGAAASAATAAAAAKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAA  295 (1048)
Q Consensus       216 ~gaerk~ggge~~~~~~~~~g~a~~~pkiGys~~g~~~hp~HsqfKYVRPga~~~pga~~~~~~g~pgq~rp~~~~~~~a  295 (1048)
                      ++        .+ .     ...++                     |||.++.+..+++...+...+.+|+          
T Consensus        95 ~~--------~~-~-----~~~~~---------------------k~~~~~~a~~~~~~~~v~i~t~~~~----------  129 (538)
T KOG1049|consen   95 DD--------VA-V-----DESAV---------------------KTSDDQEASEGSSDQNVTIRTVKAT----------  129 (538)
T ss_pred             cc--------cc-c-----ccccc---------------------cccCccccccCCCcceeeecccccc----------
Confidence            11        11 0     00000                     8999999999998888777777766          


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCccccccCCCCCcceeecCCCcCCCCCCCCCCCCcccccCCCCH
Q 001594          296 GRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNE  375 (1048)
Q Consensus       296 GrgrGdWrp~g~k~~~~~~k~fh~G~g~~~~G~~~aGrG~eF~lp~~k~IfdvDiD~~eeKPWRkPGADISDYFNYGFnE  375 (1048)
                                   .+++.+|++|.     +|.-.+.|..      ...+||+||||.|++||||+|||||||||||||||
T Consensus       130 -------------~~~a~~kg~~~-----~~dld~~g~i------n~v~I~evDldsfEdKPWRkPGADiSDYFNYGFNE  185 (538)
T KOG1049|consen  130 -------------NKSAAPKGKMS-----QVDLDTPGTI------NGVPIFEVDLDSFEDKPWRKPGADISDYFNYGFNE  185 (538)
T ss_pred             -------------ccccccccCcc-----cccccCCccc------CCccceeecHHHhccCcccCCCccchhhhccccCH
Confidence                         12223565653     3443333333      22389999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhcchhhhhhhccCC---CCCCCceeeecCCCCCCCCCCCCCCCCcCCCC-CceEEeeccCccCC
Q 001594          376 ESWKDYCKQLEQHRLETTMQSKIRVYESGR---DQPTGRAIQVEGGSGERLPSIDTRPPRIRDSD-AIIEIVCQDSVDDD  451 (1048)
Q Consensus       376 ~TWk~Yc~kq~qlR~E~tmqsKI~~yEsg~---~lptGRaIQVEgg~geR~PS~D~R~PR~rDSD-~IIeIv~qdS~Dd~  451 (1048)
                      +||++||++|++||.+|++...+.+++..+   .+++.-.||..+    -.|.+       .... +-..++|.++.-- 
T Consensus       186 eTWk~YC~rQkrlrie~~~~~~~~~~e~~r~~~~~~~~l~~q~~g----~~p~~-------~~ts~~~~~~~~~~~~~~-  253 (538)
T KOG1049|consen  186 ETWKAYCERQKRLRIEFAGGGLERTTEPLRRQRDLFGELKIQIPG----PGPVG-------NLTSRTSVGARGIDSNQR-  253 (538)
T ss_pred             HHHHHHHHHHhhhhhhhcccccccccccccccccCcchhhhccCC----CCCcc-------ccCCccccccccCCCCCC-
Confidence            999999999999999999988888887654   344444444332    11111       0000 0111112111110 


Q ss_pred             CCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccccccccchhhhhhhhccccccccccccCCCCCCCCCCCCCCCC--
Q 001594          452 SSAGNGDRDNDLPREDRRGENDGAEDEMGPVDTEYFDGFREAYDSRNRELVRHEAPFMNVAHDNIPEGNGLLPFPPEA--  529 (1048)
Q Consensus       452 ~s~~n~~q~n~~~~~d~r~~~~~~e~~M~~~~~ey~~~f~q~y~~r~~e~~gr~~p~~ns~~~n~~~gd~~lp~~~~~--  529 (1048)
                                                .++-+.+.+...-...+     .-..+..|+.|+-..++-.+++..+..++.  
T Consensus       254 --------------------------~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~r~g~~~~~~~~~~~p  302 (538)
T KOG1049|consen  254 --------------------------PANDVPPSGGGRPLMSV-----TGSRPAEPSSNSQAPGARSGSGEPSGMSEPPP  302 (538)
T ss_pred             --------------------------CCCCCCCCCCCcccccc-----cCCcCcCCCCCccCccccCCCCCCCCCCCCCC
Confidence                                      00000011111101111     111345566666555555555543333332  


Q ss_pred             -----CCCCCCCCCCCCCCCCCCCCCCchhhccCCCCCCCCCCCCCCCCCchhhcccccchhhhhhhccCCCCCC-CCCc
Q 001594          530 -----PLRYRPGSRGPTPKYPGENIGTSHEQRRRPGRTGDRSPRMTPSQSPQIRKFHDNQDEESVESMEGKHSPL-SSPV  603 (1048)
Q Consensus       530 -----p~~~r~gsrg~~~~~~g~~~gsph~~r~~~~r~~~~Sp~~tP~Q~~~~k~~~d~q~eEs~eSmdgkhsp~-sSP~  603 (1048)
                           |-++....-|..++-| .++          -++....++.+|.|.......|..+.|+...|.++..|.. ..|.
T Consensus       303 ~~~a~p~~~~~~~~~~~~sp~-~~~----------t~Pg~~~ap~~p~~~~~~p~s~g~~~e~~~~s~~~~~s~~~~p~g  371 (538)
T KOG1049|consen  303 SMEAGPSQKERLPPGPEESPP-SNE----------TAPGASEAPSSPGDSGPPPSSLGPNEESDDYSTESGKSARTDPPG  371 (538)
T ss_pred             CcCCCCChhhccCCCcCCCCC-cCC----------CCCCcccCCCCCCCCCCCccccCcCCCCCCcccccccccccCCCc
Confidence                 2222222223222211 111          1345566777888888888888888888888877777765 6666


Q ss_pred             ccccccccccccccc-----------------------------c---------cccc-----ccc-C-cchhhcccccc
Q 001594          604 IVRDARELSVEHKDA-----------------------------V---------HDEL-----WRE-G-DEEVMQDRRST  638 (1048)
Q Consensus       604 ~v~dare~S~e~kD~-----------------------------~---------kDqk-----~~d-~-eEeV~qD~~S~  638 (1048)
                      .|+.... ++--.+.                             +         ++.+     .++ + +|-|+++++|.
T Consensus       372 ~~~~pp~-~~h~~~~~~~s~~~~~~~~~~~m~~~~~~~~~~~r~~~rs~~~r~~~~~s~~~~~~rd~~~~~~~~~~~~s~  450 (538)
T KOG1049|consen  372 EVRPPPQ-SAHLAAPEGPSPKRGESSPDMYMRHRSPHSRSRDRDNGRSGYRRRSRSRSPTRDPGRDKKPGELVGLGRDSS  450 (538)
T ss_pred             ccCCCcc-ccccccCCCCCCCccccCccccccCCCcccccccccccccchhhhhhcccCCCCcccCCCCCcccccccccC
Confidence            6666533 2221111                             1         0000     112 2 79999999999


Q ss_pred             cCCCCCCCCCccchhhhhhhhhhhHHHhhhhhhhc-ccCCCCCCCCCCCCCcccccCCCCCccchhhccCCccccccccc
Q 001594          639 RMGSMKKHPEENEQSFRRKDREGRQEMERNRMVAI-GREGSHPRRDFDPSLTHDMQMKPEGFDRRKERENSDGVWQRRED  717 (1048)
Q Consensus       639 r~g~~rrh~d~~e~~~~RKdrD~rqemER~r~~~~-gRe~syp~rd~dp~~~~~~~~~~~~~Dr~kere~~d~~Wqrred  717 (1048)
                      +.-.+++|...+.....||.+|.-.||||.|+.+. +++..-+||-||-..... ..+.+.|++.|+.+.....|..+..
T Consensus       451 ~~~~~~~~~~~~~~~~~rk~~d~~REr~~rr~~~~~~~d~~~~~r~~~~~~e~s-~~r~~~~~kskr~~~~~~~~s~~~~  529 (538)
T KOG1049|consen  451 KRWRNGPPRTLERDETSRKKVDRDREREHRRKESSVDKDRHREHRRWDENEESS-SGRREDHSKSKRSGTHLEEYSSRSS  529 (538)
T ss_pred             hhhhccCCCccccccccccccchhhHHHHHHhhhccchhhcchhhhhhhccccc-cccchhcchhhhccccchhhccCCC
Confidence            99999999999999999999999999999999998 788889999999887666 6678999999999999999999999


Q ss_pred             Ccccccc
Q 001594          718 EPYSRKN  724 (1048)
Q Consensus       718 d~~~rr~  724 (1048)
                      ..++++.
T Consensus       530 ~~e~~~~  536 (538)
T KOG1049|consen  530 FDESQRN  536 (538)
T ss_pred             ccccccc
Confidence            9998875

>PF05182 Fip1: Fip1 motif; InterPro: IPR007854 This short motif is about 40 amino acids in length and is found in the Fip1 protein that is a component of a Saccharomyces cerevisiae pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase []	Back alignment and domain information

>COG5213 FIP1 Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification]	Back alignment and domain information

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1048
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 47.2 bits (111), Expect = 3e-05
 Identities = 88/614 (14%), Positives = 156/614 (25%), Gaps = 248/614 (40%)

Query: 370 NFGLNEESWKDYCKQ--------LEQH-RLETTMQ--SKIRVYESGRDQP---------- 408
           N+       K   +Q        +EQ  RL    Q  +K  V    R QP          
Sbjct: 90  NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS---RLQPYLKLRQALLE 146

Query: 409 --TGRAIQVEG--GSGE--------RLPSIDTRPP---------RIRDSDAIIE------ 441
               + + ++G  GSG+            +  +                + ++E      
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206

Query: 442 --IVCQDSVDDDSSAGNGDRDNDLPREDRR------GEN-----DGAEDEMGPVDTEYFD 488
             I    +   D S+    R + +  E RR       EN        ++         F+
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN---AKAWNAFN 263

Query: 489 G---------------FREAYDSRNRELVRHEAPFMNVAHDNIPEGNGLL---------P 524
                           F  A  + +  L  H             E   LL          
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL------TPDEVKSLLLKYLDCRPQD 317

Query: 525 FPPEA----PLRYRPGSRGPTPKYPGENIGTSHEQRRRPGRTGDRSPRMTPSQSPQIRKF 580
            P E     P R                I  S   R       D    +   +   I   
Sbjct: 318 LPREVLTTNPRRL-------------SIIAES--IRDGLATW-DNWKHVNCDKLTTII-- 359

Query: 581 HDNQDEESVESMEGKHSPLSSPVIVRDA-RELSVEHKDA-----VHDELWREGDEEVMQD 634
                E S+  +E        P   R     LSV    A     +   +W +  +  +  
Sbjct: 360 -----ESSLNVLE--------PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406

Query: 635 ------RRSTRMGSMKKHPEEN-------EQSFRRKDREGRQEMERNRMVAIGREGSHPR 681
                 + S     ++K P+E+           + K  E    + R  +V    +  +  
Sbjct: 407 VVNKLHKYS----LVEKQPKESTISIPSIYLELKVK-LENEYALHR-SIV----DHYNIP 456

Query: 682 RDFDPSLTHDMQMKPEGFDRRKERENSDGVWQRREDEPYSRKNRIEDTRKREREHLDEIG 741
           + FD     D+                D  +       YS              H+    
Sbjct: 457 KTFDS---DDLIPPYL-----------DQYF-------YS--------------HI---- 477

Query: 742 ARHRGKARESERID--RDEYLH----SRK-------------------QLDNGSYRPHYD 776
             H       ER+   R  +L      +K                   QL    Y+P+  
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF--YKPYIC 535

Query: 777 KDASSRHRERDDSLKSRYEMVDDYISKRRKDDEYVRRDHAEKDEILHGHRDLTSRR-KRE 835
            +     R           +V+  +       +++ +   E++ I   + DL       E
Sbjct: 536 DNDPKYER-----------LVNAIL-------DFLPK--IEENLICSKYTDLLRIALMAE 575

Query: 836 RDDILDQRRREDQQ 849
            + I ++  ++ Q+
Sbjct: 576 DEAIFEEAHKQVQR 589

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00