Citrus Sinensis ID: 001595

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------105
MEQSKLAAESHIKEISARWDPAEACRPIIDEAPVFYPTVEEFEDTLGYIAKIRSKAESFGICRIVPPSSWTPPCPLKAKNIWENAKFSTRIQQIDLLQNREPMRKKIRSRKRKRRRQSRMGSTRRNANSSSEANAAETDEKFGFQSGPDLTLEGFQKYAQNFKECYFGMNDSKEDVKSDGFEHKRLEPSVVDIEGEYWRIIERPTDEVEVYYGADLETGAFASGFPKASSLGTESDLDQYAMSGWNLNNLPRLPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSLSHDKLLFGSVQAAIKALWELSVLQKKTPGNRKWKDACGKDGVLTKAIKTRVQMKKEGLQKLPSYFKLQKMEIDFDLKTERECFSCFYDLHLSAAGCKCSPDRFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEALEGGLDALKELASKNFKWADCSDTDGGLVKMDMESEVFPMDCCEQKESSSSSPRVENIVEGNGPCCSRSHVSSEVVQSEPQRGTSGLSASHVSVNSHNEGNDETQVMNKKAKVKHEVCIDLNMDVIPDGNESKLLLSDSHGKEAIENLKAHLSACYQEKVLCSGTVKEQDTMQVRSDCNSSNSHKDPNKDQPSCSRVIEGTCSFDVKKLFGVDLSLPHQQSKLPLVDFLKTDTINGSNVRTSVTDQRFQKKLETCVEPINFGCVMCGKLWCSKQAIFPKGFRSRVNFYSVLNPEKVCNYISEVLDAGLLGPLFKVTLEECPSETFVNVSAQKCWEMVLQRLNQEIERQGGLHERGLPHPQSLQSIDGLEMFGFLSSPIIQAIEALDPNHLCMEYWNHKLLTFGKTTEVNKNSSSGLSCSEAETKSKIFGVALMDEDQNSPSGQNSVEEEAQLVLRGLFQKASPKELKVMQRILYSEGRSDEWRVALATLIEEIQKSCR
ccccHHHHcccccccccccccccccccccccccEEcccHHHHccHHHHHHHHHHHcccccEEEEcccccccccccccccccccccccccccHHHHccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccEEEEEccccccccccEEEccccEEEEcccccHHHHHHHHHHHccccccccHHHHccccccccHHHHHHccccEEEEEccccEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccHHcccccccccccccccccccccccccccHHHHcccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccEEEccccccccccccccccccEEEEEccccccccHHHHHHHccccccccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcc
cccccccccccccEEEEccccHHcccccccccccccccHHHHHcHHHHHHHHHHHHHHccEEEEEccccccccccccccccccccccccHHHHHHHHHcccHHHHcHHHHHHHHHHHccccccccccccccHHHHccccHcccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHccccccEEEEEccccccccccccccccccccccccccHHccccccccccccccccHHHEEcccccccEccEEEEEEEEcHHEEEcccccEEEEEHHccccccEEcccccHHHHHHHHHHHHHcHHHHHHccHHHHHHHHHccHHHHHHccccEEEEEccccEEEEEcccHHHccccccccHHHHHcccccccHHHHHHHHHHHHHHcccccEcHHHHHHHHHHcHHHccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHccccccccHHHHHccEEEEEEEEcccccccEEEEccHHHHccccccccEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccccEEEEEcccccccccccccccccccccHHHHHHHHcccHHcccccccccccccHHHHHHHHHHHccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccHHHHccEEEccEEEEEEEEccccccccEEcccccccEEEEEEEccHHHHHHHHHHHHHccccccEEEEEEcccccEEEEEccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHcccccHHHHHHHHHcccccEEHHHHcccccccccccccccccccccccccccccccEccEEcccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcc
MEQSKLAAESHIKEIsarwdpaeacrpiideapvfyptveEFEDTLGYIAKIRSKAEsfgicrivppsswtppcplkakniwenakfSTRIQQIDLLQNREPMRKKIRSRKRKRrrqsrmgstrrnanssseanaaetdekfgfqsgpdltlEGFQKYAQNFKECyfgmndskedvksdgfehkrlepsvvdieGEYWRiierptdevevyygadletgafasgfpkasslgtesdldqyamsgwnlnnlprlpgsvlafegsdisgvlVPWLYVGMCFssfcwhvedhhlyslnylhwgdpkiwygvpgshaSTLEKAMRKHLPDLFEEQPDLLHELVTQLspsvlkaegvpvyhvvqhsgefvltfprayhsgfncgfncaeavnvapvdwlAHGQQAVELYSEQHrktslshdklLFGSVQAAIKALWELSVLqkktpgnrkwkdacgkdgvLTKAIKTRVQMKKEGLQKLPSYFKLQKMEIDFDLKTERECFSCfydlhlsaagckcspdrfaclkhanifcsceidHRFVILRYSTDELNTLVEALEGGLDALKELASknfkwadcsdtdgglvkmdmesevfpmdcceqkesssssprvenivegngpccsrshvssevvqsepqrgtsglsaSHVSvnshnegndetQVMNKKAKVKHEVCIDLnmdvipdgnesklllsdSHGKEAIENLKAHLSACYQekvlcsgtvkeqdtmqvrsdcnssnshkdpnkdqpscsrviegtcsfdvkklfgvdlslphqqsklplvdflktdtingsnvrtsvTDQRFQKKLEtcvepinfgcvmcgklwcskqaifpkgfrsrvnfysvlnpEKVCNYISEVldagllgplfkvtleecpsetfvnVSAQKCWEMVLQRLNQEIERqgglherglphpqslqsidglemfgflssPIIQAIEALDPNHLCMEYWnhklltfgkttevnknsssglscseaetKSKIFGVAlmdedqnspsgqnsvEEEAQLVLRGLFQKASPKELKVMQRILYSEGRSDEWRVALATLIEEIQKSCR
MEQSKLAAESHIKeisarwdpaeaCRPIIDEAPVFYPTVEEFEDTLGYIAKIRSKAESFGICrivppsswtppcPLKAKNIWENAKFSTRIqqidllqnrepmrkkirsrkrkrrrqsrmgstrrnanssseanaaetdekfgFQSGPDLTLEGFQKYAQNFKECYFGMNDSKEDVksdgfehkrlepsvvdiegeyWRIIERPTDEVEVYYGADLETGAFASGFPKASSLGTESDLDQYAMSGWNLNNLPRLPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSLSHDKLLFGSVQAAIKALWELSvlqkktpgnrkwkdacgkdgvltKAIKTRVQMKkeglqklpsyfklQKMEIDFDLKTERECFSCFYDLHLSAAGCKCSPDRFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEALEGGLDALKELASKNFKWADCSDTDGGLVKMDMESEVFPMDCCEQKESSSSSPRVENIVEGNGPCCSRSHVSSEVVQSEPQRGTSGLSASHVSvnshnegndetqvmNKKAKVKHEVCIDLNMDVIPDGNESKLLLSDSHGKEAIENLKAHLSACYQEKVLCSGTVKEQDTMQVRSdcnssnshkdpnkdqpscSRVIEGTCSFDVKKLFGVDLSLphqqsklplvdflktdtingsnvrtsvtdqrfQKKLETCVEPINFGCVMCGKLWCSKQAIFPKGFRSRVNFYSVLNPEKVCNYISEVLDAGLLGPLFKVTLEECPSETFVNVSAQKCWEMVLQRLNQEIERQGGLHERGLPHPQSLQSIDGLEMFGFLSSPIIQAIEALDPNHLCMEYWNHKLLTFGKTTEVNKnsssglscseaeTKSKIFGVALMDEDQNSPSGQNSVEEEAQLVLRGlfqkaspkelKVMQRILysegrsdewRVALATLIEEIQKSCR
MEQSKLAAESHIKEISARWDPAEACRPIIDEAPVFYPTVEEFEDTLGYIAKIRSKAESFGICRIVPPSSWTPPCPLKAKNIWENAKFSTRIQQIDLLQNREPMrkkirsrkrkrrrqsrmgstrrnanssseanaaetDEKFGFQSGPDLTLEGFQKYAQNFKECYFGMNDSKEDVKSDGFEHKRLEPSVVDIEGEYWRIIERPTDEVEVYYGADLETGAFASGFPKASSLGTESDLDQYAMSGWNLNNLPRLPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSLSHDKLLFGSVQAAIKALWELSVLQKKTPGNRKWKDACGKDGVLTKAIKTRVQMKKEGLQKLPSYFKLQKMEIDFDLKTERECFSCFYDLHLSAAGCKCSPDRFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEALEGGLDALKELASKNFKWADCSDTDGGLVKMDMESEVFPMDCCEQKESSSSSPRVENIVEGNGPCCSRSHVSSEVVQSEPQRGTSGLSASHVSVNSHNEGNDETQVMNKKAKVKHEVCIDLNMDVIPDGNESKLLLSDSHGKEAIENLKAHLSACYQEKVLCSGTVKEQDTMQVRSDCNSSNSHKDPNKDQPSCSRVIEGTCSFDVKKLFGVDLSLPHQQSKLPLVDFLKTDTINGSNVRTSVTDQRFQKKLETCVEPINFGCVMCGKLWCSKQAIFPKGFRSRVNFYSVLNPEKVCNYISEVLDAGLLGPLFKVTLEECPSETFVNVSAQKCWEMVLQRLNQEIERQGGLHERGLPHPQSLQSIDGLEMFGFLSSPIIQAIEALDPNHLCMEYWNHKLLTFGKTTEVNKNSSSGLSCSEAETKSKIFGVALMDEDQNSPSGQNSVEEEAQLVLRGLFQKASPKELKVMQRILYSEGRSDEWRVALATLIEEIQKSCR
**************ISARWDPAEACRPIIDEAPVFYPTVEEFEDTLGYIAKIRSKAESFGICRIVPPSSWTPPCPLKAKNIWENAKFSTRIQQIDLL****************************************************LTLEGFQKYAQNFKECYFGM****************LEPSVVDIEGEYWRIIERPTDEVEVYYGADLETGAFASGFP*********DLDQYAMSGWNLNNLPRLPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTL******HLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSLSHDKLLFGSVQAAIKALWELSVLQKKTPGNRKWKDACGKDGVLTKAIKTRVQMKKEGLQKLPSYFKLQKMEIDFDLKTERECFSCFYDLHLSAAGCKCSPDRFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEALEGGLDALKELASKNFKWADCSDTDGGLVKM*********************************************************************************VKHEVCIDLNMDVIPD******L********AIENLKAHLSACYQEKVLCSGT******************************RVIEGTCSFDVKKLFGVDLSLPHQQSKLPLVDFLKTDTINGSNVRTSVTDQRFQKKLETCVEPINFGCVMCGKLWCSKQAIFPKGFRSRVNFYSVLNPEKVCNYISEVLDAGLLGPLFKVTLEECPSETFVNVSAQKCWEMVLQRLNQEI*****************QSIDGLEMFGFLSSPIIQAIEALDPNHLCMEYWNHKLLTFGKT**********************************************LVLRGLFQK****ELKVMQRILYSEGRSDEWRVALATLIEE******
***************************IIDEAPVFYPTVEEFEDTLGYIAKIRSKAESFGICRIVPPSSWTPPCPLKAKNIWENAKFSTRIQQIDLLQNREPMRKKIRSRKRKRRRQSRMGSTRRNANSSSEANAAETDEKFGFQSGPDLTLEGFQKYAQNFKECYFGMNDSK***********RLEPSVVDIEGEYWRIIERPTDEVEVYYGADLETGAFASG***************YAMSGWNLNNLPRLPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSLSHDKLLFGSVQAAIKALWELSVLQK***************GVLT*************************MEIDFDLKTERECFSCFYDLHLSAAGCKCSPDRFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEALEGGLDALKEL**********************************K*****SPRVENIVEGN**********************************************************************************************************************************************************************************************ETCVEPINFGCVMCGKLWCSKQAIFPKGFRSRVNFYSVLNPEKVCNYISEVLDAGLLGPLFKVTLEECPSETFVNVSAQKCWEMVLQRLN*******************LQSIDGLEMFGFLSSPIIQAIEALDPNHLCMEYWNH******************************************************LVLRGLFQKASPKELKVMQRILYSEGRSDEWRVALATLIEEIQK***
************KEISARWDPAEACRPIIDEAPVFYPTVEEFEDTLGYIAKIRSKAESFGICRIVPPSSWTPPCPLKAKNIWENAKFSTRIQQIDLLQNREPMR**********************************DEKFGFQSGPDLTLEGFQKYAQNFKECYFGMNDSKEDVKSDGFEHKRLEPSVVDIEGEYWRIIERPTDEVEVYYGADLETGAFASGFPKASSLGTESDLDQYAMSGWNLNNLPRLPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSLSHDKLLFGSVQAAIKALWELSVLQKKTPGNRKWKDACGKDGVLTKAIKTRVQMKKEGLQKLPSYFKLQKMEIDFDLKTERECFSCFYDLHLSAAGCKCSPDRFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEALEGGLDALKELASKNFKWADCSDTDGGLVKMDMESEVFPMD****************IVEGNGPCCS*************************SVNSHNEGNDETQVMNKKAKVKHEVCIDLNMDVIPDGNESKLLLSDSHGKEAIENLKAHLSACYQEKVLCSGTVKEQDT***********************SRVIEGTCSFDVKKLFGVDLSLPHQQSKLPLVDFLKTDTINGSNVRTSVTDQRFQKKLETCVEPINFGCVMCGKLWCSKQAIFPKGFRSRVNFYSVLNPEKVCNYISEVLDAGLLGPLFKVTLEECPSETFVNVSAQKCWEMVLQRLNQEIERQGGLHERGLPHPQSLQSIDGLEMFGFLSSPIIQAIEALDPNHLCMEYWNHKLLTFGKTT**************AETKSKIFGVALMDE***********EEEAQLVLRGLFQKASPKELKVMQRILYSEGRSDEWRVALATLIEEIQKSCR
*********SHIKEISARWDPAEACRPIIDEAPVFYPTVEEFEDTLGYIAKIRSKAESFGICRIVPPSSWTPPCPLKAKNIWENAKFSTRIQQIDLLQNREPMRKKIRSRKRKRRRQS***********SSEANAAETDEKFGFQSGPDLTLEGFQKYAQNFKECYFGMNDSKEDVKSDGFEHKRLEPSVVDIEGEYWRIIERPTDEVEVYYGADLETGAFASGFPKASSLGTESDLDQYAMSGWNLNNLPRLPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSLSHDKLLFGSVQAAIKALWELSVLQKKTPGNRKWKDACGKDGVLTKAIKTRVQMKKEGLQKLPSYFKLQKMEIDFDLKTERECFSCFYDLHLSAAGCKCSPDRFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEALEGGLDALKELASKNFKWADCSDTDGGLVKMDMESEVFPMDCCEQKESSSSSPRVENIVEGNGPCCSRSHVSSEVVQSEPQRGTSGLSASH******************KAKVKHEVCIDLNMDVIPDGNESKLLLSDSHGKEAIENLKAHLSACYQEKVLCSGTVKEQDTMQVRSD**************************************************FLKTDT***********DQRFQKKLETCVEPINFGCVMCGKLWCSKQAIFPKGFRSRVNFYSVLNPEKVCNYISEVLDAGLLGPLFKVTLEECPSETFVNVSAQKCWEMVLQRLNQEIERQGGLHERGLPHPQSLQSIDGLEMFGFLSSPIIQAIEALDPNHLCMEYWNHK**************************SKIFGVALMDE*******QNSVEEEAQLVLRGLFQKASPKELKVMQRILYSEGRSDEWRVALATLIEEIQKSCR
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEQSKLAAESHIKEISARWDPAEACRPIIDEAPVFYPTVEEFEDTLGYIAKIRSKAESFGICRIVPPSSWTPPCPLKAKNIWENAKFSTRIQQIDLLQNREPMRKKIRSRKRKRRRQSRMGSTRRNANSSSEANAAETDEKFGFQSGPDLTLEGFQKYAQNFKECYFGMNDSKEDVKSDGFEHKRLEPSVVDIEGEYWRIIERPTDEVEVYYGADLETGAFASGFPKASSLGTESDLDQYAMSGWNLNNLPRLPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSLSHDKLLFGSVQAAIKALWELSVLQKKTPGNRKWKDACGKDGVLTKAIKTRVQMKKEGLQKLPSYFKLQKMEIDFDLKTERECFSCFYDLHLSAAGCKCSPDRFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEALEGGLDALKELASKNFKWADCSDTDGGLVKMDMESEVFPMDCCEQKESSSSSPRVENIVEGNGPCCSRSHVSSEVVQSEPQRGTSGLSASHVSVNSHNEGNDETQVMNKKAKVKHEVCIDLNMDVIPDGNESKLLLSDSHGKEAIENLKAHLSACYQEKVLCSGTVKEQDTMQVRSDCNSSNSHKDPNKDQPSCSRVIEGTCSFDVKKLFGVDLSLPHQQSKLPLVDFLKTDTINGSNVRTSVTDQRFQKKLETCVEPINFGCVMCGKLWCSKQAIFPKGFRSRVNFYSVLNPEKVCNYISEVLDAGLLGPLFKVTLEECPSETFVNVSAQKCWEMVLQRLNQEIERQGGLHERGLPHPQSLQSIDGLEMFGFLSSPIIQAIEALDPNHLCMEYWNHKLLTFGKTTEVNKNSSSGLSCSEAETKSKIFGVALMDEDQNSPSGQNSVEEEAQLVLRGLFQKASPKELKVMQRILYSEGRSDEWRVALATLIEEIQKSCR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1048 2.2.26 [Sep-21-2011]
Q8GUI6954 Probable lysine-specific no no 0.522 0.574 0.660 0.0
Q3UXZ9 1690 Lysine-specific demethyla yes no 0.351 0.217 0.425 3e-87
P29375 1690 Lysine-specific demethyla yes no 0.353 0.218 0.420 2e-86
Q9VMJ7 1838 Lysine-specific demethyla yes no 0.364 0.207 0.413 2e-86
Q5F3R2 1522 Lysine-specific demethyla yes no 0.374 0.257 0.414 4e-86
Q80Y84 1544 Lysine-specific demethyla no no 0.373 0.253 0.408 4e-85
Q6IQX0 1503 Lysine-specific demethyla no no 0.369 0.257 0.394 4e-85
Q9UGL1 1544 Lysine-specific demethyla no no 0.373 0.253 0.408 6e-85
Q30DN6 1545 Lysine-specific demethyla no no 0.382 0.259 0.398 7e-84
Q62240 1548 Lysine-specific demethyla no no 0.375 0.254 0.398 1e-82
>sp|Q8GUI6|JMJ14_ARATH Probable lysine-specific demethylase JMJ14 OS=Arabidopsis thaliana GN=JMJ14 PE=1 SV=1 Back     alignment and function desciption
 Score =  768 bits (1984), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/554 (66%), Positives = 442/554 (79%), Gaps = 6/554 (1%)

Query: 14  EISARWDPAEACRPIIDEAPVFYPTVEEFEDTLGYIAKIRSKAESFGICRIVPPSSWTPP 73
           +I+ARW+P+EACRP++D+AP+FYPT E+F+D LGYI K+RSKAES+GICRIVPP +W PP
Sbjct: 38  KITARWNPSEACRPLVDDAPIFYPTNEDFDDPLGYIEKLRSKAESYGICRIVPPVAWRPP 97

Query: 74  CPLKAKNIWENAKFSTRIQQIDLLQNREPMRKKIRSRKRKRRRQSRMGSTRRNANS---S 130
           CPLK K IWEN+KF TRIQ IDLLQNREP++K  +++KRKRRR S++G TRR  +S   +
Sbjct: 98  CPLKEKKIWENSKFPTRIQFIDLLQNREPIKKSTKTKKRKRRRISKIGYTRRKRDSGCDT 157

Query: 131 SEANAAETDEKFGFQSGPDLTLEGFQKYAQNFKECYFGMNDSKEDVKSDGFEHKRLEPSV 190
           + + +++++ KFGFQ+GPD TLE FQKY + FKECYF    S++   S   E+K+ +P V
Sbjct: 158 ASSGSSDSEGKFGFQTGPDFTLEEFQKYDEYFKECYF---QSEDHPGSKASENKKFKPKV 214

Query: 191 VDIEGEYWRIIERPTDEVEVYYGADLETGAFASGFPKASSLGTESDLDQYAMSGWNLNNL 250
            D+EGEYWRI+E+ TDEVEVYYGADLET  F SGFPK       S+ DQY+  GWNLNNL
Sbjct: 215 KDLEGEYWRIVEQATDEVEVYYGADLETKKFGSGFPKYKPGYPISEADQYSQCGWNLNNL 274

Query: 251 PRLPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPG 310
            RLPGSVLAFE  DISGV+VPWLYVGMCFS+FCWHVEDHHLYS+NYLH GDPK+WYG+PG
Sbjct: 275 SRLPGSVLAFESCDISGVIVPWLYVGMCFSTFCWHVEDHHLYSMNYLHTGDPKVWYGIPG 334

Query: 311 SHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPR 370
           +HA + E  M+K LPDLFEEQPDLLH+LVTQLSP +LK EGVPVY  VQ SGEF+LTFP+
Sbjct: 335 NHAESFENVMKKRLPDLFEEQPDLLHQLVTQLSPRILKEEGVPVYRAVQRSGEFILTFPK 394

Query: 371 AYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSLSHDKLLFGSVQAAIKAL 430
           AYHSGFNCGFNCAEAVNVAPVDWL HGQ AVE YS+Q RK+SLSHDKLL G+   A   L
Sbjct: 395 AYHSGFNCGFNCAEAVNVAPVDWLVHGQNAVEGYSKQRRKSSLSHDKLLLGAAMEATYCL 454

Query: 431 WELSVLQKKTPGNRKWKDACGKDGVLTKAIKTRVQMKKEGLQKLPSYFKLQKMEIDFDLK 490
           WELS+ +KKTP   +WK  C +DG+LTKA+K RVQM++E L  L   F L+KME DFD K
Sbjct: 455 WELSLSKKKTPVIARWKRVCSEDGLLTKAVKKRVQMEEERLNHLQDGFSLRKMEGDFDNK 514

Query: 491 TERECFSCFYDLHLSAAGCKCSPDRFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEA 550
            ERECF CFYDLH+SA+ CKCSP+RFACL HA   CSCE   R++++R++ DEL  LV A
Sbjct: 515 RERECFLCFYDLHMSASSCKCSPNRFACLIHAKDLCSCESKDRYILIRHTLDELWALVRA 574

Query: 551 LEGGLDALKELASK 564
           LEG LDA+   ASK
Sbjct: 575 LEGDLDAIDLWASK 588
Histone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3 with a higher activity for H3K4me3 and H3K4me2 than H3K4me1. No activity on H3K9me3/2, H3K36me3/2 and H3K27me3/2. Represses FT and TSF expression to inhibit the floral transition. Binds around the transcription start site of the FT locus. Involved in the DRM2-mediated maintenance of DNA methylation, but not required for the de novo DNA methylation. Required for demethylating histone H3K4me3 at the target of RNA silencing.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -
>sp|Q3UXZ9|KDM5A_MOUSE Lysine-specific demethylase 5A OS=Mus musculus GN=Kdm5a PE=1 SV=2 Back     alignment and function description
>sp|P29375|KDM5A_HUMAN Lysine-specific demethylase 5A OS=Homo sapiens GN=KDM5A PE=1 SV=3 Back     alignment and function description
>sp|Q9VMJ7|KDM5_DROME Lysine-specific demethylase lid OS=Drosophila melanogaster GN=lid PE=1 SV=1 Back     alignment and function description
>sp|Q5F3R2|KDM5B_CHICK Lysine-specific demethylase 5B OS=Gallus gallus GN=KDM5B PE=2 SV=1 Back     alignment and function description
>sp|Q80Y84|KDM5B_MOUSE Lysine-specific demethylase 5B OS=Mus musculus GN=Kdm5b PE=1 SV=1 Back     alignment and function description
>sp|Q6IQX0|KD5BB_DANRE Lysine-specific demethylase 5B-B OS=Danio rerio GN=kdm5bb PE=2 SV=2 Back     alignment and function description
>sp|Q9UGL1|KDM5B_HUMAN Lysine-specific demethylase 5B OS=Homo sapiens GN=KDM5B PE=1 SV=3 Back     alignment and function description
>sp|Q30DN6|KDM5D_CANFA Lysine-specific demethylase 5D OS=Canis familiaris GN=KDM5D PE=2 SV=1 Back     alignment and function description
>sp|Q62240|KDM5D_MOUSE Lysine-specific demethylase 5D OS=Mus musculus GN=Kdm5d PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1048
3594839961118 PREDICTED: probable lysine-specific deme 0.995 0.932 0.604 0.0
4494355621069 PREDICTED: probable lysine-specific deme 0.966 0.947 0.571 0.0
3565328961049 PREDICTED: probable lysine-specific deme 0.969 0.968 0.555 0.0
3565585381048 PREDICTED: probable lysine-specific deme 0.966 0.966 0.562 0.0
3574428911000 Lysine-specific demethylase 5A [Medicago 0.921 0.966 0.562 0.0
3575194371042 Lysine-specific demethylase 5A [Medicago 0.966 0.972 0.527 0.0
297804096948 transcription factor jumonji family prot 0.859 0.950 0.505 0.0
302143629 1178 unnamed protein product [Vitis vinifera] 0.936 0.832 0.464 0.0
356528420923 PREDICTED: probable lysine-specific deme 0.555 0.630 0.683 0.0
356511043948 PREDICTED: probable lysine-specific deme 0.534 0.590 0.705 0.0
>gi|359483996|ref|XP_002271515.2| PREDICTED: probable lysine-specific demethylase JMJ14-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1218 bits (3151), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 660/1091 (60%), Positives = 791/1091 (72%), Gaps = 48/1091 (4%)

Query: 1    MEQSKLAAESHIKE------------------------ISARWDPAEACRPIIDEAPVFY 36
            MEQS L  E  IKE                        ISARW+P EACRP+I+EAPVFY
Sbjct: 33   MEQSSLEPEFQIKEDHSSKHALKNDSNIEYSGSPQNQKISARWNPTEACRPLIEEAPVFY 92

Query: 37   PTVEEFEDTLGYIAKIRSKAESFGICRIVPPSSWTPPCPLKAKNIWENAKFSTRIQQIDL 96
            PTVEEF+DTL YIA IR KAE +GICRIVPP SW PPCPL+ ++IW++ KF TR+QQ+DL
Sbjct: 93   PTVEEFQDTLNYIASIRPKAEPYGICRIVPPPSWVPPCPLREESIWKHLKFPTRMQQVDL 152

Query: 97   LQNREPMRKKIRSRKRKRRRQSRMGSTRRNANSS-SEAN-AAETDEKFGFQSGPDLTLEG 154
            LQNREPMRKK R RKRKRRR SRMG+TRR++ S  SEAN  +++DEKFGF SG D TLE 
Sbjct: 153  LQNREPMRKKNRGRKRKRRRYSRMGTTRRHSRSEVSEANIVSDSDEKFGFHSGSDFTLEE 212

Query: 155  FQKYAQNFKECYFGMNDSKEDVKSDGFE-HKRLEPSVVDIEGEYWRIIERPTDEVEVYYG 213
            FQK+A +FKE YFG+ D+K+++ SDG E +KR EPSV DIEGEYWRI+E+PTDEVEVYYG
Sbjct: 213  FQKHADSFKEFYFGIKDAKDNLNSDGVECNKRWEPSVEDIEGEYWRIVEKPTDEVEVYYG 272

Query: 214  ADLETGAFASGFPKASSLGTESDLDQYAMSGWNLNNLPRLPGSVLAFEGSDISGVLVPWL 273
            ADLET AF SGFPKASSL +E+D DQY  SGWNLNN PRLPGSVL FE +DISGVLVPWL
Sbjct: 273  ADLETEAFVSGFPKASSLISENDSDQYVASGWNLNNFPRLPGSVLCFEQNDISGVLVPWL 332

Query: 274  YVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPD 333
            YVGMCFSSFCWHVEDHHLYSLNYLHWGD K+WYGVPGSHAS LE AMRKHLPDLFEEQP 
Sbjct: 333  YVGMCFSSFCWHVEDHHLYSLNYLHWGDSKVWYGVPGSHASALENAMRKHLPDLFEEQPY 392

Query: 334  LLHELVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDW 393
            LL+ELVTQLSPSVLK+E VPVY  +Q+SGEF+LTFPRAYHSGFNCGFNCAEAVNVAPVDW
Sbjct: 393  LLNELVTQLSPSVLKSENVPVYRAIQNSGEFILTFPRAYHSGFNCGFNCAEAVNVAPVDW 452

Query: 394  LAHGQQAVELYSEQHRKTSLSHDKLLFGSVQAAIKALWELSVLQKKTPGNRKWKDACGKD 453
            L+HGQ AVELYSEQ RKTS+SHDKLL  S Q A++AL + SVL K+   N  WK  CGKD
Sbjct: 453  LSHGQSAVELYSEQCRKTSISHDKLLLASAQKAVQALRDPSVLGKEDQVNLSWKSVCGKD 512

Query: 454  GVLTKAIKTRVQMKKEGLQKLPSYFKLQKMEIDFDLKTERECFSCFYDLHLSAAGCKCSP 513
            G LTKA+KTRVQM++E L +LP  ++LQKME DFDLK ERECFSCFYDLHLSAA C+CSP
Sbjct: 513  GTLTKAVKTRVQMEEERLDRLPIGWRLQKMERDFDLKNERECFSCFYDLHLSAASCECSP 572

Query: 514  DRFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEALEGGLDALKELASKNFKWADCSD 573
            D+FACLKHA++ CSCE + +FV+LRY+ D+L TLVE+LEGGLDA++  AS++      +D
Sbjct: 573  DQFACLKHASLICSCEPNRKFVLLRYTMDDLKTLVESLEGGLDAIEVWASEDLGLVS-AD 631

Query: 574  TDGGLVKMDMESEVFPMDCCEQKESSSSSPRVENIVEGNGPCCSRSHVSSEVVQSEPQRG 633
             D     +D E E+     C+QKES   S R +  ++ N PC S  HVSSEVVQSE Q+G
Sbjct: 632  KDACGAMLDQEREISGPIGCDQKESPPCSSRTQENLDINEPCSSSYHVSSEVVQSENQQG 691

Query: 634  TSGLSASHVSVNSHNEG-NDETQVMNKKAKVKHEVCIDLNMDVIPDGNESKL-LLSDSHG 691
            T G   SH+  + HN+  N E      ++KV    CIDLN+D + D + S L  +S S  
Sbjct: 692  TFGFCVSHIRTDRHNDNLNKEGLTKGYESKVGQGFCIDLNLDTMSDEHVSGLQQVSYSCD 751

Query: 692  KEAIENL-KAHLSACYQEKVLCSGTVKEQDTMQVRSDCNSSNSHKDPNKDQPSCSRVIEG 750
             +A  N+ +  LS C +EKV C+   K+ D +++  DC+SS S+  PNK           
Sbjct: 752  SKATGNVAETFLSVCKEEKVNCADVPKQPDIVRLGGDCDSSVSYVLPNKHHFPYPVDNGN 811

Query: 751  TCSFDVKKLFGVDL--SLPHQQSKLPLVDFLKTDTINGSNVRTSVTDQR-FQKKLETCVE 807
             C  D  KLFG D+  SLPH  S LP     KT+ +  S+V+   TDQ     K+  CVE
Sbjct: 812  PCISDGSKLFGADILVSLPH-SSTLP-SSLPKTEILGSSDVKACATDQTCLIPKMNFCVE 869

Query: 808  PINFGCVMCGKLWCSKQAIFPKGFRSRVNFYSVLNPEKVCNYISEVLDAGLLGPLFKVTL 867
            P++FG V+ GK WCSKQAIFPKGF SRV F+SV +P ++C YISEVLDAGLLGPLFKVT 
Sbjct: 870  PMHFGTVLFGKPWCSKQAIFPKGFTSRVKFFSVCDPTQMCYYISEVLDAGLLGPLFKVTS 929

Query: 868  EECPSETFVNVSAQKCWEMVLQRLNQEIERQGGLHERGLPHPQSLQSIDGLEMFGFLSSP 927
            E CPSETF NVS +KCWEMVLQ+L QEI R   L ++ LP  + LQ ++GLEMFGFLS P
Sbjct: 930  EGCPSETFANVSPEKCWEMVLQKLQQEIIRHSSLGKQLLPSLECLQGVNGLEMFGFLSPP 989

Query: 928  IIQAIEALDPNHLCMEYWNHKLLTFGKTTEVNKNSSS-------GLSCSEAETKSKIFGV 980
            IIQ IEALDPNH C+EYWN K     K   VN  S+S       GLSCS  ETK+K+FG 
Sbjct: 990  IIQVIEALDPNHQCLEYWNQKSRV--KMENVNDMSASNSRKYPFGLSCSPGETKAKLFGF 1047

Query: 981  ALMDEDQNSPS---GQNSVEEEAQLVLRGLFQKASPKELKVMQRILYSEGRSDEWRVALA 1037
             L  +D ++ S   G +SV E+ +  L+G F+KA+ +EL +M ++  SE  S EW VA  
Sbjct: 1048 DLTKQDPDNSSIGRGDHSVGEDIKTTLQGFFKKANREELIMMYKVFCSEYTSAEWGVAFT 1107

Query: 1038 TLIEEIQKSCR 1048
            TL EEI+K+C+
Sbjct: 1108 TLTEEIRKTCK 1118

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449435562|ref|XP_004135564.1| PREDICTED: probable lysine-specific demethylase JMJ14-like [Cucumis sativus] gi|449508625|ref|XP_004163366.1| PREDICTED: probable lysine-specific demethylase JMJ14-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356532896|ref|XP_003535005.1| PREDICTED: probable lysine-specific demethylase JMJ14-like [Glycine max] Back     alignment and taxonomy information
>gi|356558538|ref|XP_003547562.1| PREDICTED: probable lysine-specific demethylase JMJ14-like [Glycine max] Back     alignment and taxonomy information
>gi|357442891|ref|XP_003591723.1| Lysine-specific demethylase 5A [Medicago truncatula] gi|358344555|ref|XP_003636354.1| Lysine-specific demethylase 5A [Medicago truncatula] gi|355480771|gb|AES61974.1| Lysine-specific demethylase 5A [Medicago truncatula] gi|355502289|gb|AES83492.1| Lysine-specific demethylase 5A [Medicago truncatula] Back     alignment and taxonomy information
>gi|357519437|ref|XP_003630007.1| Lysine-specific demethylase 5A [Medicago truncatula] gi|355524029|gb|AET04483.1| Lysine-specific demethylase 5A [Medicago truncatula] Back     alignment and taxonomy information
>gi|297804096|ref|XP_002869932.1| transcription factor jumonji family protein [Arabidopsis lyrata subsp. lyrata] gi|297315768|gb|EFH46191.1| transcription factor jumonji family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|302143629|emb|CBI22382.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356528420|ref|XP_003532801.1| PREDICTED: probable lysine-specific demethylase JMJ14-like [Glycine max] Back     alignment and taxonomy information
>gi|356511043|ref|XP_003524241.1| PREDICTED: probable lysine-specific demethylase JMJ14-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1048
TAIR|locus:2128659954 JMJ14 "JUMONJI 14" [Arabidopsi 0.610 0.670 0.571 1e-254
TAIR|locus:2196979819 JMJ18 "Jumonji domain-containi 0.528 0.676 0.626 3.1e-245
TAIR|locus:20256351209 PKDM7D [Arabidopsis thaliana ( 0.547 0.474 0.561 4.1e-230
TAIR|locus:2044697806 MEE27 "maternal effect embryo 0.539 0.700 0.565 2.9e-220
TAIR|locus:2064910708 AT2G38950 [Arabidopsis thalian 0.393 0.581 0.430 3.4e-113
UNIPROTKB|B4E1Y0888 KDM5D "Lysine-specific demethy 0.253 0.299 0.485 1.2e-93
RGD|13054291099 Kdm5a "lysine (K)-specific dem 0.483 0.461 0.355 2.8e-91
UNIPROTKB|E9PSW71099 Jarid1a "Protein Jarid1a" [Rat 0.483 0.461 0.355 2.8e-91
MGI|MGI:2136980 1690 Kdm5a "lysine (K)-specific dem 0.483 0.3 0.355 3.9e-89
UNIPROTKB|F1NN75 1696 KDM5A "Uncharacterized protein 0.491 0.303 0.349 4.8e-89
TAIR|locus:2128659 JMJ14 "JUMONJI 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1931 (684.8 bits), Expect = 1.0e-254, Sum P(3) = 1.0e-254
 Identities = 375/656 (57%), Positives = 453/656 (69%)

Query:    14 EISARWDPAEACRPIIDEAPVFYPTVEEFEDTLGYIAKIRSKAESFGICRIVPPSSWTPP 73
             +I+ARW+P+EACRP++D+AP+FYPT E+F+D LGYI K+RSKAES+GICRIVPP +W PP
Sbjct:    38 KITARWNPSEACRPLVDDAPIFYPTNEDFDDPLGYIEKLRSKAESYGICRIVPPVAWRPP 97

Query:    74 CPLKAKNIWENAKFSTRIQQIDLLQNREPMXXXXXXXXXXXXXXXXXXXXXXXXXX---X 130
             CPLK K IWEN+KF TRIQ IDLLQNREP+                              
Sbjct:    98 CPLKEKKIWENSKFPTRIQFIDLLQNREPIKKSTKTKKRKRRRISKIGYTRRKRDSGCDT 157

Query:   131 XXXXXXXXDEKFGFQSGPDLTLEGFQKYAQNFKECYFGMNDSKEDVKSDGFEHKRLEPSV 190
                     + KFGFQ+GPD TLE FQKY + FKECYF    S++   S   E+K+ +P V
Sbjct:   158 ASSGSSDSEGKFGFQTGPDFTLEEFQKYDEYFKECYF---QSEDHPGSKASENKKFKPKV 214

Query:   191 VDIEGEYWRIIERPTDEVEVYYGADLETGAFASGFPKASSLGTESDLDQYAMSGWNLNNL 250
              D+EGEYWRI+E+ TDEVEVYYGADLET  F SGFPK       S+ DQY+  GWNLNNL
Sbjct:   215 KDLEGEYWRIVEQATDEVEVYYGADLETKKFGSGFPKYKPGYPISEADQYSQCGWNLNNL 274

Query:   251 PRLPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPG 310
              RLPGSVLAFE  DISGV+VPWLYVGMCFS+FCWHVEDHHLYS+NYLH GDPK+WYG+PG
Sbjct:   275 SRLPGSVLAFESCDISGVIVPWLYVGMCFSTFCWHVEDHHLYSMNYLHTGDPKVWYGIPG 334

Query:   311 SHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPR 370
             +HA + E  M+K LPDLFEEQPDLLH+LVTQLSP +LK EGVPVY  VQ SGEF+LTFP+
Sbjct:   335 NHAESFENVMKKRLPDLFEEQPDLLHQLVTQLSPRILKEEGVPVYRAVQRSGEFILTFPK 394

Query:   371 AYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSLSHDKLLFGSVQAAIKAL 430
             AYHSGFNCGFNCAEAVNVAPVDWL HGQ AVE YS+Q RK+SLSHDKLL G+   A   L
Sbjct:   395 AYHSGFNCGFNCAEAVNVAPVDWLVHGQNAVEGYSKQRRKSSLSHDKLLLGAAMEATYCL 454

Query:   431 WELSVLQKKTPGNRKWKDACGKDGVLTKAIKTRVQMKKEGLQKLPSYFKLQKMEIDFDLK 490
             WELS+ +KKTP   +WK  C +DG+LTKA+K RVQM++E L  L   F L+KME DFD K
Sbjct:   455 WELSLSKKKTPVIARWKRVCSEDGLLTKAVKKRVQMEEERLNHLQDGFSLRKMEGDFDNK 514

Query:   491 TERECFSCFYDLHLSAAGCKCSPDRFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEA 550
              ERECF CFYDLH+SA+ CKCSP+RFACL HA   CSCE   R++++R++ DEL  LV A
Sbjct:   515 RERECFLCFYDLHMSASSCKCSPNRFACLIHAKDLCSCESKDRYILIRHTLDELWALVRA 574

Query:   551 LEGGLDALKELASKNFKWADCSDTDGGLVKMDME-SEVFPMDCCEQKESSSSSPRVENIV 609
             LEG LDA+   ASK      C D          E + +    C + + SS    R +N +
Sbjct:   575 LEGDLDAIDLWASK------CRDQYPSQHPRAREYAYLKSAPCIKSRGSSKVQQREQNNL 628

Query:   610 EGNGPCCSRSHVSSEVVQSEPQRGTSGLSA-SHVSVNSHNEG-NDETQVMNKKAKV 663
             +           S++ VQ + Q G S ++   H S  +H  G  D++ V + K  V
Sbjct:   629 QLVSERLQSDLTSNKEVQLK-QDGDSDVNRHGHESERNHVHGITDKSAVTDVKLGV 683
GO:0003677 "DNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS
GO:0032453 "histone demethylase activity (H3-K4 specific)" evidence=IDA
GO:0048573 "photoperiodism, flowering" evidence=IMP
GO:0009910 "negative regulation of flower development" evidence=IMP
GO:0034720 "histone H3-K4 demethylation" evidence=IMP
GO:0010216 "maintenance of DNA methylation" evidence=IMP
GO:0043687 "post-translational protein modification" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
TAIR|locus:2196979 JMJ18 "Jumonji domain-containing protein 18" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025635 PKDM7D [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044697 MEE27 "maternal effect embryo arrest 27" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2064910 AT2G38950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|B4E1Y0 KDM5D "Lysine-specific demethylase 5D" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1305429 Kdm5a "lysine (K)-specific demethylase 5A" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E9PSW7 Jarid1a "Protein Jarid1a" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:2136980 Kdm5a "lysine (K)-specific demethylase 5A" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1NN75 KDM5A "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1048
pfam02373114 pfam02373, JmjC, JmjC domain, hydroxylase 3e-54
smart0054286 smart00542, FYRC, FY-rich domain, C-terminal regio 2e-23
pfam0596584 pfam05965, FYRC, F/Y rich C-terminus 5e-21
smart0054542 smart00545, JmjN, Small domain found in the jumonj 4e-19
pfam0292854 pfam02928, zf-C5HC2, C5HC2 zinc finger 1e-16
pfam0237534 pfam02375, JmjN, jmjN domain 5e-15
smart0055858 smart00558, JmjC, A domain family that is part of 1e-14
smart0054144 smart00541, FYRN, FY-rich domain, N-terminal regio 6e-10
pfam0596454 pfam05964, FYRN, F/Y-rich N-terminus 6e-08
>gnl|CDD|202224 pfam02373, JmjC, JmjC domain, hydroxylase Back     alignment and domain information 
 Score =  183 bits (467), Expect = 3e-54
 Identities = 64/117 (54%), Positives = 75/117 (64%), Gaps = 3/117 (2%)

Query: 272 WLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQ 331
           WLY+GM  S+  WH+ED  LYS+NYLH+G PK+WY +P  +A   EK + KH      EQ
Sbjct: 1   WLYMGMPGSTTPWHIEDQGLYSINYLHFGGPKVWYIIPSEYAEKFEKVLSKHN---GGEQ 57

Query: 332 PDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNV 388
           PDLL  L T +SP  L   G+PVY  VQ  GEFV TFP  YH  FN GFN AEAVN 
Sbjct: 58  PDLLLHLNTIISPKQLLENGIPVYRFVQKPGEFVFTFPGWYHQVFNLGFNIAEAVNF 114

The JmjC domain belongs to the Cupin superfamily. JmjC-domain proteins may be protein hydroxylases that catalyze a novel histone modification. This is confirmed to be a hydroxylase: the human JmjC protein named Tyw5p unexpectedly acts in the biosynthesis of a hypermodified nucleoside, hydroxy-wybutosine, in tRNA-Phe by catalyzing hydroxylation. Length = 114
>gnl|CDD|197781 smart00542, FYRC, FY-rich domain, C-terminal region Back     alignment and domain information
>gnl|CDD|218831 pfam05965, FYRC, F/Y rich C-terminus Back     alignment and domain information
>gnl|CDD|128818 smart00545, JmjN, Small domain found in the jumonji family of transcription factors Back     alignment and domain information
>gnl|CDD|217292 pfam02928, zf-C5HC2, C5HC2 zinc finger Back     alignment and domain information
>gnl|CDD|190295 pfam02375, JmjN, jmjN domain Back     alignment and domain information
>gnl|CDD|214721 smart00558, JmjC, A domain family that is part of the cupin metalloenzyme superfamily Back     alignment and domain information
>gnl|CDD|128814 smart00541, FYRN, FY-rich domain, N-terminal region Back     alignment and domain information
>gnl|CDD|218830 pfam05964, FYRN, F/Y-rich N-terminus Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1048
KOG1246904 consensus DNA-binding protein jumonji/RBP2/SMCY, c 100.0
KOG0958690 consensus DNA damage-responsive repressor GIS1/RPH 100.0
PF02373114 JmjC: JmjC domain, hydroxylase; InterPro: IPR01312 99.97
smart0054286 FYRC "FY-rich" domain, C-terminal region. is somet 99.84
PF0596586 FYRC: F/Y rich C-terminus; InterPro: IPR003889 The 99.82
smart0054542 JmjN Small domain found in the jumonji family of t 99.78
PF0596454 FYRN: F/Y-rich N-terminus; InterPro: IPR003888 The 99.74
PF0237534 JmjN: jmjN domain; InterPro: IPR003349 Jumonji pro 99.6
PF0292854 zf-C5HC2: C5HC2 zinc finger; InterPro: IPR004198 Z 99.52
smart0054144 FYRN "FY-rich" domain, N-terminal region. is somet 99.5
smart0055857 JmjC A domain family that is part of the cupin met 99.25
KOG1246904 consensus DNA-binding protein jumonji/RBP2/SMCY, c 98.02
PF13621251 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU 96.31
KOG2131427 consensus Uncharacterized conserved protein, conta 95.86
KOG1356889 consensus Putative transcription factor 5qNCA, con 93.88
KOG2130407 consensus Phosphatidylserine-specific receptor Ptd 92.35
PF08007319 Cupin_4: Cupin superfamily protein; InterPro: IPR0 85.17
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=5.2e-78  Score=744.94  Aligned_cols=763  Identities=35%  Similarity=0.502  Sum_probs=566.4

Q ss_pred             cccccccccCCcccCCCCCCCCCccCCCHHhhhCHHHHHHHHHHhhhhcCceEEcCCCCCCCCCCCcccccccccccccc
Q 001595           11 HIKEISARWDPAEACRPIIDEAPVFYPTVEEFEDTLGYIAKIRSKAESFGICRIVPPSSWTPPCPLKAKNIWENAKFSTR   90 (1048)
Q Consensus        11 ~~~~~~~rw~p~~~~r~~i~eaPVF~PT~EEF~Dpl~YI~~I~~~AekyGIcKIVPP~~WkPpc~L~ek~i~~~~kF~tr   90 (1048)
                      ...++...+.+..+.|......+.+.+....|.|...|+..++..++.||+|.++||..|+|++++..+..|...+|.++
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (904)
T KOG1246|consen   69 TLEVDFYSDLTELAKRVISNLKPLLLSIPKNFKDKLLYISKLKLRAEFYGICEKLPPPTSKPKEPLKGKQNWFSSGFDQR  148 (904)
T ss_pred             ccccchhhhhhhhhhcccccccccccccCccccchhhccccccccccccccccccCCcccCCCCcCCcccccccCCCCCc
Confidence            34455666777777788888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -chhhhhhcccccchhhhh------h-hhhhhcccccccccccC-----CCCcccccccccccccccccCC-CCCHHHHH
Q 001595           91 -IQQIDLLQNREPMRKKIR------S-RKRKRRRQSRMGSTRRN-----ANSSSEANAAETDEKFGFQSGP-DLTLEGFQ  156 (1048)
Q Consensus        91 -iQ~v~~lq~r~p~~k~~~------~-~k~k~~~~~~~~~~~r~-----~~s~s~~~~~~~~e~fgF~~g~-~~tL~~F~  156 (1048)
                       +|.++..+.+...+.+..      + .+..+......+..+..     .+++-........+.|||..|. +||+..|+
T Consensus       149 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~yt~~~f~  228 (904)
T KOG1246|consen  149 EVEFIDYPQCNTCSKGKEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPTPESKPNYKFGFEQGSREYTLPKFE  228 (904)
T ss_pred             ccccccchhhhccccCCCccceecccccCcccccccCCCCCcCCcCcccCCcccccccCCcccccCcCCCCCccccchhh
Confidence             998887776655543321      1 11111111122211110     0011011223446889998876 99999999


Q ss_pred             HHHHHHHHhhhCCCCCCCCCcCCccccccCCCCHHHHHHHhhhhccCCCCceeeeecCCCCCCCCCCCCCCCCCCCCC-C
Q 001595          157 KYAQNFKECYFGMNDSKEDVKSDGFEHKRLEPSVVDIEGEYWRIIERPTDEVEVYYGADLETGAFASGFPKASSLGTE-S  235 (1048)
Q Consensus       157 ~~A~~fk~~~f~~~~~~~~~~~~~~~~~~~~ps~e~vE~efWr~V~~~~~~veV~YGaDl~s~~~GSgFp~~~~~~~~-~  235 (1048)
                      ++|+.|+..||.+..+..             ++.+++|++||++|...+..++|+||+|+.+..+|+|||........ .
T Consensus       229 ~~~~~~~~~~~~~~~~~~-------------~~~~~vE~e~w~~v~~~~~~~~~~~g~d~~~~~~~s~~~~~~~~~~~~~  295 (904)
T KOG1246|consen  229 EYADNFKKDYFPKSKNSP-------------DSTEDVEKEFWRLVASNLESVEVLYGADLSTKEFGSGFPKSASGPLLGS  295 (904)
T ss_pred             hHhhhhhccccccccCCC-------------CchHHHHHHHHHhhcccccceeeeeccchhhccccccccccCCCCCCCc
Confidence            999999999998865432             33789999999999999889999999999999999999987654333 4


Q ss_pred             chhhhhccCCCCCCCCCCCCCcccccCCCCCCcccceEEeecccccccccccCccceeeeeeeeCCceeEEEecCccHHH
Q 001595          236 DLDQYAMSGWNLNNLPRLPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHAST  315 (1048)
Q Consensus       236 ~~~~y~~~~WNLnnLp~l~gSLL~~~~~~I~GVttP~LYiGM~fStf~WH~ED~~LySINYlH~GapK~WY~VP~~~a~k  315 (1048)
                      ..++|+.++|||+|+|++++|+|+|.+.+|+|+++||+|+||+||+||||+|||++||+||+|+|+||+||+||++++++
T Consensus       296 ~~~~y~~s~wnL~~i~~~~~svl~~~~~di~g~~~p~l~~gm~fs~~~wh~ed~~~~slny~h~g~pk~wy~v~~~~ae~  375 (904)
T KOG1246|consen  296 EAEKYSNSGWNLNNIPRLEGSVLSHIDTDISGVTVPWLYIGMCFSTFCWHVEDHSLYSLNYLHLGEPKTWYSVPGSAAEK  375 (904)
T ss_pred             chhhhccCcccccccccCCccccccccCCcCccccccccccccccccccccCCccccccchhhcCCceEEEecCcchHHH
Confidence            66899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCchhhccCchhhhhcccccChhhHhhcCCCeeEeecCCCcEEEEcCCceeeeeccccceeeeecccccchhh
Q 001595          316 LEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLA  395 (1048)
Q Consensus       316 fE~l~k~~~p~lf~~~pd~L~h~~t~isP~~L~~~GIpv~r~vQ~pGEFVVTfP~aYHsgfn~GfN~aEAVNFA~~dWL~  395 (1048)
                      ||++|++..|+++..+|++++.+.++++|..|..+||||++++|+|||||||||++||+|||+|||++|+|||||.+||+
T Consensus       376 ~e~~~~~~~p~~~~~~pd~~~~~~~~~~p~~l~~~gvpv~~~~q~~ge~vitfP~~Y~~g~~~gf~~~e~vn~ap~dwl~  455 (904)
T KOG1246|consen  376 FEKAMNKLSPGLFIEQPDLLHALVTLMSPNFLTDEGVPVYRTVQNPGEFVITFPRAYHAGFNCGFNFAEAVNFAPSDWLP  455 (904)
T ss_pred             HHHHHHhhCCcccccCcccccccccccCcchhhcCCCCceecccCCCCEeecCCCeeeecccccccHHHhcccCCcchhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHhhhhhc-ccCCCCcchhhccccchhHHHHHHHHHHHHHhhcccC
Q 001595          396 HGQQAVELYSEQHRKTSLSHDKLLFGSVQAAIKALWELSVLQ-KKTPGNRKWKDACGKDGVLTKAIKTRVQMKKEGLQKL  474 (1048)
Q Consensus       396 ~g~~a~e~y~~~~r~~~fS~d~LL~~~A~~~~~~l~e~~l~~-k~~~~~~~~~~~c~~~~il~~~~k~r~~~e~~~~~~l  474 (1048)
                      +|+.++++|+...+.++|||++|++.+|...+...+.+.+.. ++......|...+...++....+..+   ++..... 
T Consensus       456 ~gr~~~~~~~~~~~~~lfs~~~l~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-  531 (904)
T KOG1246|consen  456 VGRGAAEAYSLLLRLSLFSHDELALLNAENPVKIRKQLSLASDKNDDLAGESKKWLEESGRSKLVIEKY---ERYLLES-  531 (904)
T ss_pred             HHHHHHHHHHhhccCCccCHHHHHHhccccchhhhhhhccccccchhhhchhhhhhhhcccchhHHHHH---HHHHHHh-
Confidence            999999999999999999999999999998877555443322 22222233433333333332222111   1111111 


Q ss_pred             chhhhhhhcccccCCcccccccccccccccccccccccCCccccccchhhhcCCCCCceEEEEEcCHHHHHHHHHHHHhc
Q 001595          475 PSYFKLQKMEIDFDLKTERECFSCFYDLHLSAAGCKCSPDRFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEALEGG  554 (1048)
Q Consensus       475 ~~~~~~~k~~~~~d~~~er~C~~Ck~~~fLS~V~C~C~~~~~~CL~Ha~~lCsC~~~~~~llyRYt~~EL~~lv~~le~~  554 (1048)
                              ..   |+..+++|..|+++||++++.|+|.+.++.||.|..++|+|....++++|||++++|..++.+++++
T Consensus       532 --------~~---~~~~~~~c~~ck~~~~l~~~~~~c~~~~~~cl~h~~~~~~~~~~~~~l~~r~~id~l~~~~~k~~~~  600 (904)
T KOG1246|consen  532 --------LP---DDMLERQCEACKRNCFLSEIECKCKPKKLECLSHYKKLCSCPGTDKTLLLRTNIDELDALLDKLQLH  600 (904)
T ss_pred             --------cc---chhhHHHHHHhcccHhhhhhhhcccccccccccchhhcCCCCccccEEEEecchhHHHHHhhhhhhh
Confidence                    10   2223899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHhhhccCCCCCCcccccccccccCcccccccccCCCCCcccccccCCCCccCCCcccccccccCCCCCC
Q 001595          555 LDALKELASKNFKWADCSDTDGGLVKMDMESEVFPMDCCEQKESSSSSPRVENIVEGNGPCCSRSHVSSEVVQSEPQRGT  634 (1048)
Q Consensus       555 ~~~~~~W~~~~~~~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  634 (1048)
                      ...+..|..++.+++.+....+ ...++...|...                  ..+.              +|.    +.
T Consensus       601 ~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~e~~~------------------~~n~--------------~~~----~~  643 (904)
T KOG1246|consen  601 ELSKLPWFGRVDGALPSLGFRG-ANLLEHAGEKIL------------------GMNT--------------VQC----YM  643 (904)
T ss_pred             hhhcchhhhhhhhhhcccccCC-cchHHHHHHHhh------------------cccc--------------cce----ee
Confidence            9999999999999998766542 000000000000                  0000              000    00


Q ss_pred             CCCccccccccCCCCCCCcccccccccccccceeecccCCcCCCCCccccccccCCCchhHHHHhhhhhhhhhhhhcccc
Q 001595          635 SGLSASHVSVNSHNEGNDETQVMNKKAKVKHEVCIDLNMDVIPDGNESKLLLSDSHGKEAIENLKAHLSACYQEKVLCSG  714 (1048)
Q Consensus       635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  714 (1048)
                      ..+.   ..+..          .   ..+.+..|+++|++.. +                          |+-..|.+.+
T Consensus       644 k~~~---~rt~~----------~---~~n~~~~s~~~n~~p~-~--------------------------~~~~~v~~~~  680 (904)
T KOG1246|consen  644 KVPG---SRTTA----------H---QENSALASININLGPG-D--------------------------CVWFAVPLEY  680 (904)
T ss_pred             cccc---ccchh----------H---HHHHHHhhhhccCCcc-c--------------------------ceeeecccch
Confidence            0000   00000          0   0222334455554432 0                          0000111000


Q ss_pred             ccccccccccccCCCCCCCCCCCCCCCCCCcccccCccccccccccccccCCCcccCCCccccccccccccCCccccccc
Q 001595          715 TVKEQDTMQVRSDCNSSNSHKDPNKDQPSCSRVIEGTCSFDVKKLFGVDLSLPHQQSKLPLVDFLKTDTINGSNVRTSVT  794 (1048)
Q Consensus       715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  794 (1048)
                      .-.               +               ...+...           ++...                       
T Consensus       681 ~~~---------------~---------------~~~~~~~-----------~~~~~-----------------------  696 (904)
T KOG1246|consen  681 WGV---------------V---------------EDACEKH-----------NLKYS-----------------------  696 (904)
T ss_pred             hHH---------------H---------------HHHHhhc-----------ccccc-----------------------
Confidence            000               0               0000000           00000                       


Q ss_pred             ccccccccccceeEEEeeeeecCCCcccCCcccCCCeEEEEEeccccCC-CceeEEEEEEeeCCCCCceEEEEeC---CC
Q 001595          795 DQRFQKKLETCVEPINFGCVMCGKLWCSKQAIFPKGFRSRVNFYSVLNP-EKVCNYISEVLDAGLLGPLFKVTLE---EC  870 (1048)
Q Consensus       795 ~~~~p~~~~~sv~llsLG~Iv~dr~fHse~yIyPvGF~S~R~y~S~~dP-~~~c~Y~ceIlD~G~~~PlFrVt~e---d~  870 (1048)
                      +.    .+.++.+...+|.++....|.+.....+-++.++..+.++.+| +...+|+.++++++...|+|++...   ..
T Consensus       697 ~~----~~w~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~v~~~~~~~~~~~l~~~~~~~~~~~  772 (904)
T KOG1246|consen  697 DS----SVWPSSEEELLNLVIPVQKFIQKAGDLVYVGNGTVHWVQVLGFCINVSWNVSESTFAQLALALFRHDHNIESKH  772 (904)
T ss_pred             ch----hccchhhHHHHhccchHHHHHhccccccccCCceEEEeeecCccccceecccccchhhhhcchhhhhhhhhccC
Confidence            00    0000144456777787788999999999999999999999999 9999999999999988999999988   66


Q ss_pred             CC---CeEEcCChhHHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCcccccCCCCHHHH--------------HHHH
Q 001595          871 PS---ETFVNVSAQKCWEMVLQRLNQEIERQGGLHERGLPHPQSLQSIDGLEMFGFLSSPII--------------QAIE  933 (1048)
Q Consensus       871 P~---~~~~g~Spt~cW~~VlkrIn~~i~~r~~~G~~~Lp~l~~~~sisG~emFGls~P~I~--------------~lIe  933 (1048)
                      +.   .++.......+|.++..+...++.+........+..++....+++-.++++..|.+.              .+|.
T Consensus       773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~c~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~  852 (904)
T KOG1246|consen  773 PSSVPMSFKVWEMAEKEVMVSDRKRFEAKKLCLKRSLAKSQLECELAIDEFHEICVAVPEKVELSHLCSRCERPRLAVIF  852 (904)
T ss_pred             cccchhhhhhhhHhhcchhhcchhHHHHHHHhhhhhhhhhhhhHHHHHhhhhheecccCCCccccchhhhccccchheee
Confidence            66   778889999999999988777766511111222222335567899999999999887              4555


Q ss_pred             hCCCCccccccccccc
Q 001595          934 ALDPNHLCMEYWNHKL  949 (1048)
Q Consensus       934 sLP~a~~C~~Y~~~~~  949 (1048)
                      .+....+...||-...
T Consensus       853 ~~~~~~~~~~~~~~~~  868 (904)
T KOG1246|consen  853 VLDPNLKPTPYRVLEN  868 (904)
T ss_pred             eeccCCCCCccccccc
Confidence            5555555555555543

>KOG0958 consensus DNA damage-responsive repressor GIS1/RPH1, jumonji superfamily [Replication, recombination and repair] Back     alignment and domain information
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [] Back     alignment and domain information
>smart00542 FYRC "FY-rich" domain, C-terminal region Back     alignment and domain information
>PF05965 FYRC: F/Y rich C-terminus; InterPro: IPR003889 The "FY-rich" domain C-terminal region is sometimes closely juxtaposed with the N-terminal region (IPR003888 from INTERPRO), but sometimes is far distant Back     alignment and domain information
>smart00545 JmjN Small domain found in the jumonji family of transcription factors Back     alignment and domain information
>PF05964 FYRN: F/Y-rich N-terminus; InterPro: IPR003888 The "FY-rich" domain N-terminal region is sometimes closely juxtaposed with the C-terminal region (IPR003889 from INTERPRO), but sometimes is far distant Back     alignment and domain information
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [] Back     alignment and domain information
>PF02928 zf-C5HC2: C5HC2 zinc finger; InterPro: IPR004198 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00541 FYRN "FY-rich" domain, N-terminal region Back     alignment and domain information
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily Back     alignment and domain information
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only] Back     alignment and domain information
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A Back     alignment and domain information
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms] Back     alignment and domain information
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription] Back     alignment and domain information
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms] Back     alignment and domain information
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1048
2oq6_A381 Crystal Structure Of Jmjd2a Complexed With Histone 1e-36
2gp3_A349 Crystal Structure Of The Catalytic Core Domain Of J 2e-36
2p5b_A352 The Complex Structure Of Jmjd2a And Trimethylated H 2e-36
2xml_A348 Crystal Structure Of Human Jmjd2c Catalytic Domain 2e-36
2wwj_A348 Structure Of Jmjd2a Complexed With Inhibitor 10a Le 2e-36
2pxj_A347 The Complex Structure Of Jmjd2a And Monomethylated 3e-36
2w2i_A358 Crystal Structure Of The Human 2-Oxoglutarate Oxyge 3e-36
3dxt_A354 Crystal Structure Of The Catalytic Core Domain Of J 5e-36
3dxu_A337 The Crystal Structure Of Core Jmjd2d Complexed With 6e-36
4hon_A330 Crystal Structure Of Human Jmjd2d/kdm4d In Complex 7e-36
4hoo_A330 Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme L 8e-36
3opt_A373 Crystal Structure Of The Rph1 Catalytic Core With A 9e-31
>pdb|2OQ6|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3 Peptide Trimethylated At Lys9 Length = 381 Back     alignment and structure 
Iteration: 1

 Score =  151 bits (382), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 71/157 (45%), Positives = 93/157 (59%)
Query: 245 WNLNNLPRLPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKI 304
           WN+  L  +   V    G  I GV  P+LY GM  +SF WH ED  LYS+NYLH+G+PK 
Sbjct: 170 WNIGRLRTILDLVEKESGITIEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKS 229
Query: 305 WYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEF 364
           WY VP  H   LE+  +   P   +     L   +T +SP +LK  G+P   V Q +GEF
Sbjct: 230 WYSVPPEHGKRLERLAKGFFPGSAQSCEAFLRHKMTLISPLMLKKYGIPFDKVTQEAGEF 289
Query: 365 VLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAV 401
           ++TFP  YH+GFN GFNCAE+ N A   W+ +G+QAV
Sbjct: 290 MITFPYGYHAGFNHGFNCAESTNFATRRWIEYGKQAV 326
>pdb|2GP3|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2a Length = 349 Back     alignment and structure
>pdb|2P5B|A Chain A, The Complex Structure Of Jmjd2a And Trimethylated H3k36 Peptide Length = 352 Back     alignment and structure
>pdb|2XML|A Chain A, Crystal Structure Of Human Jmjd2c Catalytic Domain Length = 348 Back     alignment and structure
>pdb|2WWJ|A Chain A, Structure Of Jmjd2a Complexed With Inhibitor 10a Length = 348 Back     alignment and structure
>pdb|2PXJ|A Chain A, The Complex Structure Of Jmjd2a And Monomethylated H3k36 Peptide Length = 347 Back     alignment and structure
>pdb|2W2I|A Chain A, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase Loc390245 Length = 358 Back     alignment and structure
>pdb|3DXT|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2d Length = 354 Back     alignment and structure
>pdb|3DXU|A Chain A, The Crystal Structure Of Core Jmjd2d Complexed With Fe And N- Oxalylglycine Length = 337 Back     alignment and structure
>pdb|4HON|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d In Complex With An H3k9me3 Peptide And 2-oxoglutarate Length = 330 Back     alignment and structure
>pdb|4HOO|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme Length = 330 Back     alignment and structure
>pdb|3OPT|A Chain A, Crystal Structure Of The Rph1 Catalytic Core With A-Ketoglutarate Length = 373 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1048
3opt_A373 DNA damage-responsive transcriptional repressor R; 4e-91
3dxt_A354 JMJC domain-containing histone demethylation PROT; 4e-86
2ox0_A381 JMJC domain-containing histone demethylation PROT; 1e-82
3avr_A531 Lysine-specific demethylase 6A; cupin superfamily, 2e-75
4ask_A510 Lysine-specific demethylase 6B; oxidoreductase, KD 1e-73
2xxz_A332 Lysine-specific demethylase 6B; oxidoreductase, hi 3e-61
2wzo_A146 Transforming growth factor beta regulator 1; nucle 2e-31
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
3kv5_D488 JMJC domain-containing histone demethylation prote 2e-04
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A* Length = 373 Back     alignment and structure
 Score =  295 bits (755), Expect = 4e-91
 Identities = 98/405 (24%), Positives = 170/405 (41%), Gaps = 49/405 (12%)

Query: 24  ACRPIIDEAPVFYPTVEEFEDTLGYIAKIRSKAESFGICRIVPPSSWTPPCPLK-AKNIW 82
           A   I+   PVF PT E+FED   Y   I       G+ +++PP  W     L  +    
Sbjct: 6   APSEIVGGVPVFKPTYEQFEDFYAYCKAINKYGMKSGVVKVIPPKEWKDKLDLPYSAETL 65

Query: 83  ENAKFSTRIQQ-------IDLLQNREPMRKKIRSRKRKRRRQSRMGSTRRNANSSSEANA 135
           +  K  + IQQ       + ++QN E  +     + +   +        +   +S + + 
Sbjct: 66  QKIKIKSPIQQHISGNKGLFMVQNVEKNKTYNIIQWKDLSKDYVPPEDPKARRNSRKGSV 125

Query: 136 AETDEKFGFQSGPDLTLEGFQKYAQNFKECYFGMNDSKEDVKSDGFEHKRLEPSVVDIEG 195
           +++ +           ++ F+++   +        +                  +  +E 
Sbjct: 126 SKSTKLKLKNFESSFNIDDFEQFRTEYTIDLSDFQN---------------TERLKFLEE 170

Query: 196 EYWRIIERPTDEVEVYYGADLETGAFASGFPKASSLGTESDLDQYAMSGWNLNNLPRLPG 255
            YW+ +   T      YGAD     F                    ++ WN+  LP    
Sbjct: 171 YYWKTLNFTT----PMYGADTPGSIF-----------------PEGLNVWNVAKLP---- 205

Query: 256 SVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHAST 315
           ++L    + + GV   +LY G+  +SF WH+ED  LYS+NY+H+G PK WY +P      
Sbjct: 206 NILDHMETKVPGVNDSYLYAGLWKASFSWHLEDQDLYSINYIHFGAPKQWYSIPQEDRFK 265

Query: 316 LEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSG 375
             K M++  P+  +  P+ L   +   SP +L+  G+    +V H GEF++T+P  YH+G
Sbjct: 266 FYKFMQEQFPEEAKNCPEFLRHKMFLASPKLLQENGIRCNEIVHHEGEFMITYPYGYHAG 325

Query: 376 FNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSLSHDKLLF 420
           FN G+N AE+VN A  +WL  G++A + +        +   KL  
Sbjct: 326 FNYGYNLAESVNFALEEWLPIGKKAGKCHCISDS-VEIDVKKLAK 369
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 2w2i_A* Length = 354 Back     alignment and structure
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A* Length = 381 Back     alignment and structure
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A* Length = 531 Back     alignment and structure
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* Length = 510 Back     alignment and structure
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens} Length = 332 Back     alignment and structure
>2wzo_A Transforming growth factor beta regulator 1; nucleus, cell cycle, tumor suppressor; 1.60A {Homo sapiens} Length = 146 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Length = 488 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1048
d1vrba1319 Putative asparaginyl hydroxylase YxbC {Bacillus su 97.79
d1h2ka_335 Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum 97.56
>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

Probab=97.79  E-value=7.7e-05  Score=47.50  Aligned_cols=120  Identities=17%  Similarity=0.102  Sum_probs=81.2

Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCHHHHHHHHHHHCCHHHCC----CCHHHHHCCCCCCH
Q ss_conf             32359841466644430158652101344308841089716730899999999737311204----90111001135691
Q 001595          269 LVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEE----QPDLLHELVTQLSP  344 (1048)
Q Consensus       269 ttP~LYiGM~fStf~WH~ED~~LySINYlH~GapK~WY~VP~~~~~kfE~llk~~~p~lf~~----~p~~L~h~~~~isP  344 (1048)
                      ...++++|..++.+.+|.+.++  ..+.+..| .|.|+..|+.+...+       ++.....    .+.-+.....   .
T Consensus       122 ~~~~~~~~~~g~~~~~H~D~~d--~f~~Qv~G-~K~W~L~~p~~~~~~-------~~~~~~~~~~~~~~~~~~~~~---~  188 (319)
T d1vrba1         122 SKAIVYAAKNGGGFKAHFDAYT--NLIFQIQG-EKTWKLAKNENVSNP-------MQHYDLSEAPYYPDDLQSYWK---G  188 (319)
T ss_dssp             EEEEEEEECSSCCCCSEECSSE--EEEEEEES-CEEEEEECCSSCSSC-------SSCEECC----CCHHHHHHCC---S
T ss_pred             CEEEEEECCCCCCCCCCCCCCC--EEEEEECC-EEEEEEECCCCCCCC-------CCCCCCCCCCCCCCCCCCCCH---H
T ss_conf             4169995689887764567875--06886223-499999688555656-------567663347656243344211---2


Q ss_pred             HHHHHCCCCEEEEECCCCCEEEECCCCEEEEECCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf             327516998167421799199984885013211664303432235531453699999
Q 001595          345 SVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAV  401 (1048)
Q Consensus       345 ~~L~~~GIpv~r~vQ~pGEFVVTfP~aYHsgfn~GfN~aEAVNFA~~dWL~~g~~a~  401 (1048)
                      ......+.+.+.++++|||.++.-+|-+|.+.+.+-+++.+++|..++|..+-..++
T Consensus       189 ~~~~~~~~~~~~~~L~pGDvLYiP~gw~H~v~s~~~sis~sv~f~~~~~~d~~~~~~  245 (319)
T d1vrba1         189 DPPKEDLPDAEIVNLTPGTMLYLPRGLWHSTKSDQATLALNITFGQPAWLDLMLAAL  245 (319)
T ss_dssp             CCCCTTCCSSEEEEECTTCEEEECTTCEEEEECSSCEEEEEEEECCCBHHHHHHHHH
T ss_pred             HCHHHHCCCCEEEEECCCCEEEECCCCEEEEEECCCEEEEEEEECCCCHHHHHHHHH
T ss_conf             150341475279997798789827995488575587279999732797899999999
>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure