Citrus Sinensis ID: 001601

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------
Protein Sequence
MKNCDNNKEELRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIRKAVEDRSKNLELKEKKLSNNLHLQVKIEQPESLKGNEGTKQLSLQSCTMITGKNLQLLLNQHLQKHDLVFGEISHTLTKACDPASLVLDAMEGFYPPHSREGDMEFDVSIIRRTCILLLEQLSSVTPEINPQVRDEAMKVAGEWKKKMRVAEDNSLEVLGFLHLLAAYGLGPSFDGIELESLLDIVAQHRQTSKLRQSLGFAEKAHGLQCSTTREARSCLSLLNKHDLGHNEVLQLLHLAPDPAMFVLDFIQHWKSQGTGFEEDNVKCCILVLEKLKEVLPIMNPRVKGEAMKLAVEWKTKMGVGTLNSLEVLVFLQLLGTFELVASFNRVEIVELLWTISEHKQAPETCRALGFTDIVATIRFICAFKLTDIAKPEAIFKQYLDDNISDIHRKGNNSSDAKVKAMDFEVNALTFLIECFKENKLESSLLIENIKQRIVQLEMAKADCRRHSTPAPSATIQLQLASRNNYNIGTSTPTNQPVPSHTNQPQHSGINHSIGFSASREQPQLQNNYKRPRIEPLTTRAYMPQIPASVNLHRSSPTMQHGPGVALSGGQMQFDHIASNHLRVRANMGAGQTSNVTGNQNLHHFQYKYF
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHcccccccHHHHcccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHcccccccHHHccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccHHccHHHHHHHHHHHHHHHHHHHHHHHcccHHHcHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccEEEEcccc
Coil and Loop (DISEMBL)
MKNCDNNKEELRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLveksndkslVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSaaelsdecesneLELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIRKAVEDRSKNLELKEKKLSNNLHLQvkieqpeslkgnegtkqlsLQSCTMITGKNLQLLLNQHLQKHDLVFGEISHtltkacdpaslvldamegfypphsregdmefDVSIIRRTCILLLEQlssvtpeinpqVRDEAMKVAGEWKKKMRVAEDNSLEVLGFLHLLAAyglgpsfdgiELESLLDIVAQHRQTSKLRQSlgfaekahglqcsttREARSCLSLlnkhdlghnEVLQllhlapdpamFVLDFIQHwksqgtgfeednvKCCILVLEKLKEVlpimnprvKGEAMKLAVEWKTkmgvgtlnSLEVLVFLQLLGTFELVASFNRVEIVELLWTISehkqapetcralgfTDIVATIRFICAFkltdiakpEAIFKQYLDdnisdihrkgnnssdakVKAMDFEVNALTFLIECFKENKLESSLLIENIKQRIVQLEMAKadcrrhstpapsaTIQLQLAsrnnynigtstptnqpvpshtnqpqhsginhsigfsasreqpqlqnnykrprieplttraympqipasvnlhrssptmqhgpgvalsggqmqfdhIASNHLRVRanmgagqtsnvtgnqnlhhfqykyf
Flexible Loop (DISEMBL)
mkncdnnkeeLRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSlekqsndadsKIRLLDQRAkeieskesdlvlaERRIKECNFELACKEKQLELVRKRIGECECelqlkegelnlvKKSVEEWLEKLDLKMkevglveksndkslvdqRRLENLIKDFceqielkekdlrKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRlreneldskeeklDAMKEEMKKYFndielkerefnGIRKCIEKRsqeltlkekQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEalderwqdleikerkfeervkefelrekEIESIRKavedrsknlelkekklsnnlhlqvkieqpeslkgnegTKQLSLQSCTMITGKNLQLLLNQHLQKHDLVFGEISHTLTKACDPASLVLDAMEGFYPPHSREGDMEFDVSIIRRTCILLLEQlssvtpeinpqvrDEAMKVAGEWKKKMRVAEDNSLEVLGFLHLLAAYGLGPSFDGIELESLLDIVAQHRQTSKLRQSLGFAEKAHGLQCSTTREARSCLSLLNKHDLGHNEVLQLLHLAPDPAMFVLDFIQHWKSQGTGFEEDNVKCCILVLEKLKevlpimnprvKGEAMKLAVEWKTKMGVGTLNSLEVLVFLQLLGTFELVASFNRVEIVELLWTISEHKQAPETCRALGFTDIVATIRFICAFKLTDIAKPEAIFKQYLDDNISDIHRKGNNSSDAKVKAMDFEVNALTFLIECFKENKLESSLLIENIKQRIVQLEMAKADCRRHSTPAPSATIQLQLASRNNYNIGTSTPTNQPVPSHTNQPQHSGINHSIGFSASREQPQLQNNYKRPRIEPLTTRAYMPQIPASVNLHRSSPTMQHGPGVALSGGQMQFDHIASNHLRVRANMGAGqtsnvtgnqnlhHFQYKYF
Low Complexity Region (SEG)
MKNCDNNKEELRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIelslelhleeekleslQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLeikerkfeervkefelrekeIESIRKAVEDRsknlelkekklsnnlHLQVKIEQPESLKGNEGTKQLSLQSCTMITGknlqlllnqhlqkhDLVFGEISHTLTKACDPASLVLDAMEGFYPPHSREGDMEFDVSIIRRTCILLLEQLSSVTPEINPQVRDEAMKVAGEWKKKMRVAEDNSLEVLGFLHLLAAYGLGPSFDGIELESLLDIVAQHRQTSKLRQSLGFAEKAHGLQCSTTREARSCLSLLNKHDLGHNEVLQLLHLAPDPAMFVLDFIQHWKSQGTGFEEDNVKCCILVLEKLKEVLPIMNPRVKGEAMKLAVEWKTKMGVGTLNSLEVLVFLQLLGTFELVASFNRVEIVELLWTISEHKQAPETCRALGFTDIVATIRFICAFKLTDIAKPEAIFKQYLDDNISDIHRKGNNSSDAKVKAMDFEVNALTFLIECFKENKLESSLLIENIKQRIVQLEMAKADCRRHSTPAPSATIQLQLASRNNYNIGTSTPTNQPVPSHTNQPQHSGINHSIGFSASREQPQLQNNYKRPRIEPLTTRAYMPQIPASVNLHRSSPTMQHGPGVALSGGQMQFDHIASNHLRVRANMGAGQTSNVTGNQNLHHFQYKYF
Disordered region (IsUnstruct)
*********************RRSYDLAHAQANSVLNFTVQWKDLEEHL**********************************LVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVE******LVDQRRLENLIKDFCEQIELKE******************************************KLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEE*********************************YFNDIELKEREFNGIRKCIE************LKCVQ**L**C*********ELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLK****************W***********************************************************************LQSCTMITGKNLQLLLNQHLQKHDLVFGEISHTLTKACDPASLVLDAMEGFYPPHSREGDMEFDVSIIRRTCILLLEQLSSVTPEIN******AMKVAGEWKKKMRVAEDNSLEVLGFLHLLAAYGLGPSFDGIELESLLDIVAQHRQTSKLRQSLGFAEKAHGLQCSTTREARSCLSLLNKHDLGHNEVLQLLHLAPDPAMFVLDFIQHWKSQGTGFEEDNVKCCILVLEKLKEVLPIMNPRVKGEAMKLAVEWKTKMGVGTLNSLEVLVFLQLLGTFELVASFNRVEIVELLWTISEHKQAPETCRALGFTDIVATIRFICAFKLTDIAKPEAIFKQYLDDNISDIH**********VKAMDFEVNALTFLIECFKENKLESSLLIENIKQRIVQLEMAK*****************************************************************************************************************************************************
Disordered Region (DISOPRED)
MK********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************VLDAM********************RRTCILLLEQLS***************KVAG*W**********SLEVLGFLHLLAAYGLGPSFDGIELESLLDIVAQHRQTSKLRQSLGFAEKAHGLQCSTTREARSCLSLLNKHDLGHNEVLQLLHLAPDPAMFVLDFIQHWKS*******DNVKCCILVLEKLKEVLP******KGEAMKLAVEWKTKMGVGTLNSLEVLVFLQLLGTFELVASFNRVEIVELLWTISEHKQAPETCRALGFTDIVATIRFICAFKLTDIAKPEAIFKQYLD***********************EVNALTFLIECFKENKLESSLLIENIKQ*************************************************************************************************************GPG****************************TSNVTGNQNLHHFQYKYF
Disordered Region (DISEMBL)
**********LRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIRKAVEDRSKNLELKEKKLSNNLHLQVKIEQPESLKGNEGTKQLSLQSCTMITGKNLQLLLNQHLQKHDLVFGEISHTLTKACDPASLVLDAMEGFYPPHSREGDMEFDVSIIRRTCILLLEQLSSVTPEINPQVRDEAMKVAGEWKKKMRVAEDNSLEVLGFLHLLAAYGLGPSFDGIELESLLDIVAQHRQTSKLRQSLGFAEKAHGLQCSTTREARSCLSLLNKHDLGHNEVLQLLHLAPDPAMFVLDFIQHWKSQGTGFEEDNVKCCILVLEKLKEVLPIMNPRVKGEAMKLAVEWKTKMGVGTLNSLEVLVFLQLLGTFELVASFNRVEIVELLWTISEHKQAPETCRALGFTDIVATIRFICAFKLTDIAKPEAIFKQYLDDNISDIHRKGNNSSDAKVKAMDFEVNALTFLIECFKENKLESSLLIENIKQRIVQLEMA*************ATIQLQLASRNNYNIGTSTPT*************SGINHSIGFSASREQPQLQNNYKRPRIEPLTTRAYMPQIPASVNLHRSSPTMQHGPGVALSGGQMQFDHIASNHLRVRANMGAGQTSNVTGNQNLHHFQYKYF
Disordered Region (DISPRO)
*****NNKEELRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIRKAVEDRSKNLELKEKKLSNN*****************GTKQLSLQSCTMITGKNLQLLLNQHLQKHDLVFGEISHTLTKACDPASLVLDAMEGFYPPHSREGDMEFDVSIIRRTCILLLEQLSSVTPEINPQVRDEAMKVAGEWKKKMRVAEDNSLEVLGFLHLLAAYGLGPSFDGIELESLLDIVAQHRQTSKLRQSLGFAEKAHGLQCSTTREARSCLSLLNKHDLGHNEVLQLLHLAPDPAMFVLDFIQHWKSQGTGFEEDNVKCCILVLEKLKEVLPIMNPRVKGEAMKLAVEWKTKMGVGTLNSLEVLVFLQLLGTFELVASFNRVEIVELLWTISEHKQAPETCRALGFTDIVATIRFICAFKLTDIAKPEAIFKQYLDDNISDIHRKGNNSSDAKVKAMDFEVNALTFLIECFKENKLESSLLIENIKQRIVQLEMAKA***************************************T*QPQHSGINHSIGFSASREQPQLQNNYKRPRIEPLTTRAYMPQIPASVNLHRSSPTMQHGPGVALSGGQMQFDHIASNHLRVRANMGAGQTSNVTGNQNLHHFQYKYF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKNxxxxxxxxxxxxxxxxxxxxxYDLAHAQANSVLNFTVQWKDLEEHLDISxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQxxxxxxxxxxxxxxxxxxxxxLVMKEKHxxxxxxxxxxxxxxxxxxxxxxxxxxxxIIQCETKLDCKKKELELTQTSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFNGIRKCIEKRSQELTLKEKQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVKEFELREKEIESIxxxxxxxxxxxxxxxxxxxxxLHLQVKIEQPESLKGNEGTKQLSLQSCTMITGKNLQLLLNQHLQKHDLVFGEISHTLTKACDPASLVLDAMEGFYPPHSREGDMEFDVSIIRRTCILLLEQLSSVTPEINPQVRDEAMKVAGEWKKKMRVAEDNSLEVLGFLHLLAAYGLGPSFDGIELESLLDIVAQHRQTSKLRQSLGFAEKAHGLQCSTTREARSCLSLLNKHDLGHNEVLQLLHLAPDPAMFVLDFIQHWKSQGTGFEEDNVKCCILVLEKLKEVLPIMNPRVKGEAMKLAVEWKTKMGVGTLNSLEVLVFLQLLGTFELVASFNRVEIVELLWTISEHKQAPETCRALGFTDIVATIRFICAFKLTDIAKPEAIFKQYLDDNISDIHRKGNNSSDAKVKAMDFEVNALTFLIECFKENKLESSLLxxxxxxxxxxxxxxxxxxxxxSTPAPSATIQLQLASRNNYNIGTSTPTNQPVPSHTNQPQHSGINHSIGFSASREQPQLQNNYKRPRIEPLTTRAYMPQIPASVNLHRSSPTMQHGPGVALSGGQMQFDHIASNHLRVRANMGAGQTSNVTGNQNLHHFQYKYF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1046
449466953	1145	PREDICTED: uncharacterized protein LOC10	0.902	0.824	0.286	2e-93
449524874	888	PREDICTED: uncharacterized LOC101218416,	0.736	0.867	0.3	2e-82
224130844	1006	predicted protein [Populus trichocarpa]	0.534	0.555	0.359	2e-77
356541044	885	PREDICTED: uncharacterized protein LOC10	0.753	0.890	0.297	4e-68
356544329	1117	PREDICTED: uncharacterized protein LOC10	0.738	0.691	0.301	2e-64
297813019	1191	predicted protein [Arabidopsis lyrata su	0.784	0.689	0.263	2e-52
255542460	716	Protein FRIGIDA, putative [Ricinus commu	0.368	0.537	0.355	1e-49
15240463	1181	Frigida-like protein [Arabidopsis thalia	0.909	0.805	0.255	6e-49
224130856	1033	predicted protein [Populus trichocarpa]	0.561	0.568	0.288	2e-48
224130848	954	predicted protein [Populus trichocarpa]	0.565	0.619	0.292	5e-46

>gi|449466953|ref|XP_004151190.1| PREDICTED: uncharacterized protein LOC101218416 [Cucumis sativus]

 Score =  350 bits (898), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 320/1117 (28%), Positives = 555/1117 (49%), Gaps = 173/1117 (15%)

Query: 11   LRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSK---I 67
            ++L+E K+  L ++++  H++A+S L F++QWKDLE H + + + +  Q  + + +   I
Sbjct: 11   MKLSEWKQSNLCKAHEQLHSEASSFLLFSLQWKDLETHFESTREMILTQCEEVERREKAI 70

Query: 68   RLLDQR-----------AKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECE 116
             L +++           +KE+E ++++L    R I +C+  +  KE +LEL+ +R+G   
Sbjct: 71   ALKEEKLVDLEKCILECSKEVELRKNELSELNRLIVKCDSAVKGKEMELELMHERLGVLS 130

Query: 117  CELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDK-----SLVDQR--RLENLIK 169
             ++++KE EL    + + +  ++ + K K+  +V +  D       L +Q+   +  LI+
Sbjct: 131  KDIKMKEDELCRACRRLSDLEKEFEEKEKDFEMVRERIDDCEHAMELKEQKLNGVMQLIE 190

Query: 170  DFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKK 229
            +   + ELKEK +  IR+ +   E+EL +KEK   ++Q  I+D   EL+ KEK  + I+ 
Sbjct: 191  ERLMECELKEKSVESIRALLRNHEEELAIKEKQFDAIQMAIKDSNGELKLKEKELETIQN 250

Query: 230  SIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDA 289
             I    TK                        +E++L+ +++ +++R  ELD KE++ D 
Sbjct: 251  MIA---TK-----------------------WKEKRLDKIEKTIKVRTEELDLKEQEFDV 284

Query: 290  MKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENE 349
            M  ++     D+  KE E   I+ CI++ S+EL ++EKQL   Q+S+  C+N      N 
Sbjct: 285  MWSKLGALSEDLLSKESELESIKSCIKEHSKELDVQEKQLDGTQQSIRDCQNAVMMLTNY 344

Query: 350  LISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEK 409
            + ++EK I +CS+E EL++ H   ++ +    S++  S   +   I       L+ LK +
Sbjct: 345  VSTIEKAIIECSKEWELEENHHHSLKETVDGNSNDFSSVVEQHGSISLTVDKCLEGLKSQ 404

Query: 410  EKQFHSLKEALDERWQDLEIKERKFEERVKEFELRE-------KEIESIRKAVE------ 456
            ++ F++L++ ++ER + LE  E  F+ R++E   ++       KEIES++  ++      
Sbjct: 405  KEHFNALRKFIEERSKYLENVENNFKRRMEELNKKDEKVSLYLKEIESLKADMDSQILLL 464

Query: 457  --DR-------------SKNLELKEKKLS-------------------NNLHLQVKIEQP 482
              DR              + LE KEK+++                   NNLHLQVK E+ 
Sbjct: 465  EKDREELRLKEIQHKAPDEELESKEKEINLVRALIQKCNEKVKLIDDPNNLHLQVKTEE- 523

Query: 483  ESLKGNEGTKQLSLQSCTMITGKNLQLLLNQHLQKHDLVFGEISHTLTKACDPASLVLDA 542
               K    +  L   + + + GK L  LL +HL+ HDLV  E+  TL  + DPA LVLDA
Sbjct: 524  SGCKPAGSSNTLHFPTGSALDGKLLLALLCEHLKLHDLVRAELMITLKASSDPAKLVLDA 583

Query: 543  MEGFYPPHSREGDMEFDVSIIRRTCILLLEQLSSVTPEINPQVRDEAMKVAGEWKKKMRV 602
            M  FYP H+   D + D   ++R CI L E L + +P+I P +++EA+++AG WK K+ +
Sbjct: 584  MRWFYPTHTESKDAKIDFYNVKRGCIFLSELLLNFSPKITPPLKEEALRLAGLWKAKLVM 643

Query: 603  AEDNSLEVLGFLHLLAAYGLGPSFDGIELESLLDIVAQHRQTSKLRQSLGFAEKA----- 657
              +N  EV+ FL L+A + L  +F+  EL+ LL+ V+Q++Q  +L ++LG  +K+     
Sbjct: 644  PVENHAEVVAFLLLVANFRLASNFNAGELQILLNSVSQYKQAFELSRALGIGDKSSEVNA 703

Query: 658  -------------HGLQCSTTREARSC-------LSLLNKHDLGHNE-----VLQLLHLA 692
                          GL  S+  E  S          LLNK  L  ++     +L +L  +
Sbjct: 704  TPTPSLVELEQPNEGLVFSSKNEQLSMEPNEKRLYVLLNKKRLTGSKLIPSVILSILKQS 763

Query: 693  PDPAMFVLDFI-----QHWKSQGTGFEEDNVKCCILVLEKLKEVLPIMNPRVKGEAMKLA 747
             DPA  VLD I     QH K +  GF+E+ +    L+L++LK++ P + P+ + +AMK+A
Sbjct: 764  LDPAKLVLDLIQGSFHQHLKKEQLGFKENFLTWSTLLLKQLKQISPSIGPKEREDAMKIA 823

Query: 748  VEWKTKMGVGTLNSLEVLVFLQLLGTFELVASFNRVEIVELLWTISEHKQAPETCRALGF 807
            ++WK  M   T  S++ + FLQLL ++ L  SF+  EI++L   I  H+QA E C   G+
Sbjct: 824  IDWKQNMRSDTNGSMDAVGFLQLLVSYGLTTSFSGDEILKLFENIVHHEQASELCLMFGY 883

Query: 808  --------------TDIVATIRFICAFKLTDIAKPEAIFKQYLDD--NISDIHRKGNN-- 849
                            +V  +RF+C FKL +  +P  I  +YL D  N + +  K N   
Sbjct: 884  KQQIQDIVQNLIGTKQVVKAVRFVCGFKL-EFFRPVQILNEYLRDVRNATVLASKKNQGQ 942

Query: 850  ----SSDAKVKAMDFEVNALTFLIECFKENKLESSLLIENIKQRIVQL-EMAKADCRRHS 904
                ++ A  +A+D E++A+  +I C  +  L S +  + ++ R+V L EM +     + 
Sbjct: 943  KDVPTAIAMDEAIDKEIDAVKSVISCIADCNLSSEISSQVLETRVVSLEEMRRLKFNSNG 1002

Query: 905  TPAPSATIQLQLASRNNYNIGTSTPTN-----------QPVPSHTNQPQHSGINHSI--- 950
             P    T + Q  S+       S PT            Q  P H    +H    H     
Sbjct: 1003 QPTSLTTSKPQ-PSKAYTEAQCSNPTKVLPNWEKSDVPQSHPKHHQFRKHPSSTHKPHQQ 1061

Query: 951  --GFSASREQPQLQNNYKR-PRIEPLTTR-AYMPQIP 983
              G    +++ + Q +  R PR +P  TR  ++  +P
Sbjct: 1062 HQGPQKMQKKRKFQKSSMRHPRKQPCQTRPVFLSSLP 1098

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449524874|ref|XP_004169446.1| PREDICTED: uncharacterized LOC101218416, partial [Cucumis sativus]

 Score =  313 bits (803), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 270/900 (30%), Positives = 469/900 (52%), Gaps = 130/900 (14%)

Query: 11  LRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSK---I 67
           ++L+E K+  L ++++  H++A+S L F++QWKDLE H + + + +  Q  + + +   I
Sbjct: 11  MKLSEWKQSNLCKAHEQLHSEASSFLLFSLQWKDLETHFESTREMILTQCEEVERREKAI 70

Query: 68  RLLDQR-----------AKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECE 116
            L +++           +KE+E ++++L    R I +C+  +  KE +LEL+ +R+G   
Sbjct: 71  ALKEEKLVDLEKCILECSKEVELRKNELSELNRLIVKCDSAVKGKEMELELMHERLGVLS 130

Query: 117 CELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDK-----SLVDQR--RLENLIK 169
            ++++KE EL    + + +  ++ + K K+  +V +  D       L +Q+   +  LI+
Sbjct: 131 KDIKMKEDELCRACRRLSDLEKEFEEKEKDFEMVRERIDDCEHAMELKEQKLNGVMQLIE 190

Query: 170 DFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKK 229
           +   + ELKEK +  IR+ +   E+EL +KEK   ++Q  I+D   EL+ KEK  + I+ 
Sbjct: 191 ERLMECELKEKSVESIRALLRNHEEELAIKEKQFDAIQMAIKDSNGELKLKEKELETIQN 250

Query: 230 SIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDA 289
            I    TK                        +E++L+ +++ +++R  ELD KE++ D 
Sbjct: 251 MIA---TK-----------------------WKEKRLDKIEKTIKVRTEELDLKEQEFDV 284

Query: 290 MKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENE 349
           M  ++     D+  KE E   I+ CI++ S+EL ++EKQL   Q+S+  C+N      N 
Sbjct: 285 MWSKLGALSEDLLSKESELESIKSCIKEHSKELDVQEKQLDGTQQSIRDCQNAVMMLTNY 344

Query: 350 LISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEK 409
           + ++EK I +CS+E EL++ H   ++ +    S++  S   +   I       L+ LK +
Sbjct: 345 VSTIEKAIIECSKEWELEENHHHSLKETVDGNSNDFSSVVEQHGSISLTVDKCLEGLKSQ 404

Query: 410 EKQFHSLKEALDERWQDLEIKERKFEERVKEFELRE-------KEIESIRKAVE------ 456
           ++ F++L++ ++ER + LE  E  F+ R++E   ++       KEIES++  ++      
Sbjct: 405 KEHFNALRKFIEERSKYLENVENNFKRRMEELNKKDEKVSLYLKEIESLKADMDSQILLL 464

Query: 457 --DR-------------SKNLELKEKKLS-------------------NNLHLQVKIEQP 482
             DR              + LE KEK+++                   NNLHLQVK E+ 
Sbjct: 465 EKDREELRLKEIQHKAPDEELESKEKEINLVRALIQKCNEKVKLIDDPNNLHLQVKTEES 524

Query: 483 ESLKGNEGTKQLSLQSCTMITGKNLQLLLNQHLQKHDLVFGEISHTLTKACDPASLVLDA 542
              K    +  L   + + + GK L  LL +HL+ HDLV  E+  TL  + DPA LVLDA
Sbjct: 525 -GCKPAGSSNTLHFPTGSALDGKLLLALLCEHLKLHDLVRAELMITLKASSDPAKLVLDA 583

Query: 543 MEGFYPPHSREGDMEFDVSIIRRTCILLLEQLSSVTPEINPQVRDEAMKVAGEWKKKMRV 602
           M  FYP H+   D + D   ++R CI L E L + +P+I P +++EA+++AG WK K+ +
Sbjct: 584 MRWFYPTHTESKDAKIDFYNVKRGCIFLSELLLNFSPKITPPLKEEALRLAGLWKAKLVM 643

Query: 603 AEDNSLEVLGFLHLLAAYGLGPSFDGIELESLLDIVAQHRQTSKLRQSLGFAEKA----- 657
             +N  EV+ FL L+A + L  +F+  EL+ LL+ V+Q++Q  +L ++LG  +K+     
Sbjct: 644 PVENHAEVVAFLLLVANFRLASNFNAGELQILLNSVSQYKQAFELSRALGIGDKSSEVNA 703

Query: 658 -------------HGLQCSTTREARS-------CLSLLNKHDLGHNE-----VLQLLHLA 692
                         GL  S+  E  S          LLNK  L  ++     +L +L  +
Sbjct: 704 TPTPSLVELEQPNEGLVFSSKNEQLSMEPNEKRLYVLLNKKRLTGSKLIPSVILSILKQS 763

Query: 693 PDPAMFVLDFI-----QHWKSQGTGFEEDNVKCCILVLEKLKEVLPIMNPRVKGEAMKLA 747
            DPA  VLD I     QH K +  GF+E+ +    L+L++LK++ P + P+ + +AMK+A
Sbjct: 764 LDPAKLVLDLIQGSFHQHLKKEQLGFKENFLTWSTLLLKQLKQISPSIGPKEREDAMKIA 823

Query: 748 VEWKTKMGVGTLNSLEVLVFLQLLGTFELVASFNRVEIVELLWTISEHKQAPETCRALGF 807
           ++WK  M   T  S++ + FLQLL ++ L  SF+  EI++L   I  H+QA E C   G+
Sbjct: 824 IDWKQNMRSDTNGSMDAVGFLQLLVSYGLTTSFSGDEILKLFENIVHHEQASELCLMFGY 883

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130844|ref|XP_002328390.1| predicted protein [Populus trichocarpa] gi|222838105|gb|EEE76470.1| predicted protein [Populus trichocarpa]

 Score =  297 bits (760), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 218/606 (35%), Positives = 362/606 (59%), Gaps = 47/606 (7%)

Query: 70  LDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKE------ 123
           +++R KE+E  E ++    + I  C+ +L  K+K+L  VR  I +C  EL  KE      
Sbjct: 182 VEERLKELEFNEKEVERVRKLIANCDRDLEFKQKELRNVRNLINDCNKELSSKEMDLKML 241

Query: 124 ------------GELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDF 171
                        EL+ +KKS+E   ++LDLK KE+       DK+       + LI++ 
Sbjct: 242 QVRSSAKFVSNKDELDGIKKSIE-CSKELDLKKKEL-------DKT-------KELIQEC 286

Query: 172 CEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSI 231
            ++++ +E++L  I+ SIEE  K+   ++ H  S+  LI++Y EELE+KEK +D +KKSI
Sbjct: 287 VKELDSEERELSLIKKSIEESSKDFDSRQNHLGSISVLIDEYTEELEAKEKQHDAVKKSI 346

Query: 232 IQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMK 291
                +L  K+ EL   + SI ELS +L  +EEKL+S ++ V+    +++SKEE+L+ +K
Sbjct: 347 SVRSAELKSKETELRSIEDSIKELSAKLQQKEEKLDSARQHVKHCARKIESKEEELNKIK 406

Query: 292 EEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELI 351
             M  Y  ++E +EREFN I+  IE RS+EL  KE+QLK VQ S+  C  E +  + +  
Sbjct: 407 GRMNTYVKELESREREFNAIQLSIEYRSEELKGKERQLKSVQLSIGECEKELKAMKEQKN 466

Query: 352 SVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEK 411
           S++KLI +CSEEL+ K+K+L +   S  E  D+ E  +++LD IQ  +    K+ +EKEK
Sbjct: 467 SIQKLILECSEELQSKEKNLILARESLRECCDDLELKKVQLDSIQRSSHESNKKSEEKEK 526

Query: 412 QFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIRKAVEDRSKNLELKEKKLSN 471
             +SL++ LDER ++L +KE +FEERV E EL+E+++  ++++VE   K +ELKE++L +
Sbjct: 527 YLNSLEKTLDERLKNLGVKEMQFEERVNEIELKEQQLRLMQQSVEKYRKEVELKEQQLGS 586

Query: 472 N-LHLQVKIEQPESLKGNEGTKQLSLQSCTMITGKNLQLLLNQHLQKHDLVFGEISHTLT 530
           N L   V+++Q E+++  +     + Q     T +    ++N  + +HDL+   +S    
Sbjct: 587 NILSSHVRVDQTENVRNPKHASSSAFQ-FNATTSERSSPVVNVCVSEHDLMHHGVS---- 641

Query: 531 KACDPASLVLDAMEGFYPPHSREGDMEFDVSIIRRTCILLLEQLSSVTPEINPQVRDEAM 590
              +PA +VLD ++ +     ++G   FD S + R  ++LLEQL  V+P+I+PQV++ A 
Sbjct: 642 --AEPAKVVLDIVQNW-----KKGVTGFDAS-VNRDNVVLLEQLMKVSPKISPQVKEAAT 693

Query: 591 KVAGEWKKKMRVAEDNSLEVLGFLHLLAAYGLGPSFDGIELESLLDIVAQHRQTSKLRQS 650
           K+A  W+K +R+  ++S+EVL FL  LA YGL   F    +  L+ ++AQ +Q  ++ ++
Sbjct: 694 KLAVLWEKNIRLETEDSMEVLMFLLFLAVYGLVSCFSRDRILRLVRVIAQQKQAPEIFKA 753

Query: 651 LGFAEK 656
           LGFA+K
Sbjct: 754 LGFADK 759

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541044|ref|XP_003538993.1| PREDICTED: uncharacterized protein LOC100783311 [Glycine max]

 Score =  266 bits (680), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 276/928 (29%), Positives = 447/928 (48%), Gaps = 140/928 (15%)

Query: 101 KEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVD 160
           KEK+L  ++++ G    E+  KE E ++V + VEE   +L+           S  + + D
Sbjct: 19  KEKKLVSIKRQFGR---EIDAKEREYDVVTRKVEERNRELE-----------SVQRRITD 64

Query: 161 -QRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELES 219
            + +L+ + +   E  E+ ++  R I+ S    ++EL  KE H S +  +I +  +EL +
Sbjct: 65  CEWKLDTVRRMITESDEVYQQKQRGIQDS----DRELAEKEAHRSLIADMIREREQELRA 120

Query: 220 KEKLYDEI-------KKSIIQCETKLDCKKKELELTQTSII-ELSLELHL---------- 261
           K+  + ++       K  + Q    L  KK+EL++   S+I E + E  +          
Sbjct: 121 KDAEFQQVLDEGMALKNKVAQLNDDLKTKKEELDVVTRSLINEQATETTIKSMRARIKQL 180

Query: 262 ----------------EEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKE 305
                           + ++LES Q+    +  EL SK+++ +   +E+K      E K 
Sbjct: 181 LRQPYESESKQKQFEGQAKELESKQKHYERQVKELQSKQKQYEGRVKELKLNEKLYERKV 240

Query: 306 REFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELE 365
           RE     K  E R +EL   EKQ +   + +E    ++E++  EL+S E+   K   EL 
Sbjct: 241 RELGSREKQYETRMKELESNEKQCETRMKEVESNAKQYEKRVKELVSHERQYVKSVIELN 300

Query: 366 LKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQ 425
            K+K    IE    +L  E + N+ E         G +K+L+ KE +   L        +
Sbjct: 301 SKEKQ---IEGQMVDL--ESKKNQYE---------GLVKELESKEARCKVL-------LK 339

Query: 426 DLEIKERKFEERVKEFELREKEIESIRKAVEDRSKNLELKEKKLSNNLHLQVKIEQPESL 485
           +LE  E+K +E++K+ E ++ + ES RK+ E+     +L ++K ++  H           
Sbjct: 340 ELESIEKKIQEQMKDLEFKKNQCESSRKSFEEE----KLSKQKSNDQQHFT--------- 386

Query: 486 KGNEGTKQLSLQSCTMITG----KNLQLLLNQHLQKHDLVFGEISHTLTKACDPASLVLD 541
                    SL +    TG    KNL L +N  L+K++L+  ++S  L    +P  LVLD
Sbjct: 387 ----NANSASLFNQQNFTGADNSKNLPLFIN-LLEKYELMCSQVSDALQTFANPTKLVLD 441

Query: 542 AMEGFYPPHSREGDMEFDVSIIRRTCILLLEQLSSVTPEINPQVRDEAMKVAGEWKKKMR 601
            ++GFY  HSR+G +E+D SI RR C LL+++L   +P I  +V+ EA+K+A +WK  + 
Sbjct: 442 TIKGFYTSHSRQGLIEYDASISRRICNLLMDELKKSSPVIGIRVKQEAIKLATDWKANLV 501

Query: 602 VAEDNSLEVLGFLHLLAAYGLGPSFDGIELESLLDIVAQHRQTSKLRQSLGFAEKAHGLQ 661
             + + LEVL F   +A Y +G SFD IEL+ LLDI+A   QT    Q++G  ++    Q
Sbjct: 502 AGDKDCLEVLDFFKFVATYEIGSSFDAIELQRLLDIIALQYQTL---QAIGKIKEPSDNQ 558

Query: 662 CSTTREARSCLSLLNKHDLGH-NEVLQLLHLAPDPAMFVLDFI-QHWKSQGTGFEEDNV- 718
            S T + R+    L+   + H NE +  LH + DPA  VLD I     S+  G E   + 
Sbjct: 559 SSPTIDGRN----LHFPSIKHINESVN-LHTSSDPAKLVLDIILVPIASEKQGSEGAIII 613

Query: 719 -KCCILVLEKLKEVLPIMNPRVKGEAMKLAVEWKTKMGVGTLNSLEVLVFLQLLGTFELV 777
            +  IL+LE+L  + P + PRV+ EA+K+A   K  +     NSL +L FL LL  + LV
Sbjct: 614 DESHILLLEQLMRISPRVKPRVREEALKIAFALKANIRESAENSLTILGFLLLLSAYGLV 673

Query: 778 ASFNRVEIVELLWTISEHKQAPETCRALGFTDI--------------VATIRFICAFKLT 823
           + F + E+ + L + ++HKQA E  R LGF D               +  +RFICA+KL 
Sbjct: 674 SYFRKDELFKQLESAAQHKQAVELFRTLGFVDKIFDFVRNLIMKQQHIEAVRFICAYKLA 733

Query: 824 DIAKPEAIFKQYLDDNISDIHRKG--NNSSDAKVKAMDFEVNALTFLIECFKENKLESSL 881
           D  +P  + +Q++    S  +R      S + K+K  D E+  L  ++EC  EN LES  
Sbjct: 734 DKIQPVDLLRQHVAKVKSVTNRFACMKESVEQKIKVRDEEIVGLRTVLECISENNLESHQ 793

Query: 882 -LIENIKQRIVQLEMAKADCRRHSTPAPSA------------TIQLQLASRNNYNIGTST 928
            L++ I  RIV LE  K +  R  T  PS+            T+ +        ++G   
Sbjct: 794 DLVKEINDRIVDLEKQKENVVRL-TSGPSSEVEEKTCGGEAVTVTVHKPEEKKRHVGFVF 852

Query: 929 PTNQPVPSHTNQPQHSGINHSIGFSASR 956
           P N   P+  N    SG N +  +  SR
Sbjct: 853 PENYFRPA--NPMAWSGNNGTNYYGNSR 878

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544329|ref|XP_003540605.1| PREDICTED: uncharacterized protein LOC100782802 [Glycine max]

 Score =  254 bits (649), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 257/851 (30%), Positives = 416/851 (48%), Gaps = 79/851 (9%)

Query: 38   FTVQWKDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFE 97
            F VQ KD E       K  E Q  D   K++  + +    E +  +L   E+ ++E   +
Sbjct: 273  FKVQLKDFES----KEKRFEGQMKDLGFKMKQFEWKEARFEGQVKELKSKEKWVEEQMKD 328

Query: 98   LACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKS 157
            L  K KQ E  +K +   E + + +  EL   +K  EE ++ L+ KMKE    +K  +  
Sbjct: 329  LEFKRKQFEGKQKELELKEAQFEGQVKELKSKEKQFEEQMKVLEFKMKEFVGKQKVFE-- 386

Query: 158  LVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEEL 217
             + + R E  +K+    +E KEK   +   ++E  EK+   + K   S Q   E   +EL
Sbjct: 387  -LKEARFEGQVKE----LESKEKGFEERVMNLESKEKQFEGQAKELESKQKRYEGQVKEL 441

Query: 218  ESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRE 277
            +SK+  ++ + ++      +L  K+ + E+ +    E   E  L+E  LES +++   + 
Sbjct: 442  QSKQNQFEGLVRA-----HELKEKQFKGEVWELGSREKQCEGRLKE--LESNEKLYERKV 494

Query: 278  NELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLE 337
             EL S+E++ +   +E++      E K RE     K  E+R +EL   EKQ +   + +E
Sbjct: 495  RELGSREKQYERRVKELESNEKLYERKVRELGCREKQYERRVKELESNEKQCERRLKEVE 554

Query: 338  GCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQT 397
                ++E K  EL+S EK  +K   EL+  +K   +          + E   ++L+  + 
Sbjct: 555  SNEKQYETKVKELVSNEKQYEKRVLELKSNEKRFEIQVKGLESKEKQIEGQTMDLESKKD 614

Query: 398  MAIGYLKQLKEKEKQFHSLKEALDE-------RWQDLEIKERKFEERVKEFELRE----- 445
               G +K+L+ KE ++  L E L+        + +DLE K+ +FE  VKEFEL+E     
Sbjct: 615  QYEGQVKELESKEARYKVLHEELESIQKQIAGQMKDLESKKNQFEGLVKEFELKEIQFKK 674

Query: 446  --KEIESIRKAVEDRSKNLELKEKKLSNNLHLQVKIEQPESLKGNEGTKQLSLQSCT--- 500
              KE++   K  E + K+ E K+ + S +L    + EQ    K N+  +     S     
Sbjct: 675  QLKELKQNEKPFEGKVKDSESKQNQ-SESLRKSFEEEQVSKQKSNDQQQFTDANSSNNSA 733

Query: 501  ----------MITGKNLQLLLNQHLQKHDLVFGEISHTLTKACDPASLVLDAMEGFYPPH 550
                          KNL L +N  L+K++L+  ++S+ L    +P  LVLD ++GFY  H
Sbjct: 734  NLFNQQHLTDADNSKNLLLFIN-LLEKYELMCSQVSNALQTFANPTKLVLDTIKGFYASH 792

Query: 551  SREGDMEFDVSIIRRTCILLLEQLSSVTPEINPQVRDEAMKVAGEWKKKMRVAEDNSLEV 610
            SR+  +E+  SI RR C LL+++L   +P I  +V+ EA K+A  WK  + V + + LEV
Sbjct: 793  SRQELIEYGASISRRICNLLMDELKKSSPVIGIRVKQEAKKLASHWKANLVVGDKDCLEV 852

Query: 611  LGFLHLLAAYGLGPSFDGIELESLLDIVAQHRQTSKLRQSLGFAEKAHGLQCSTTREARS 670
            L F   +A Y +G SFD IEL+ LLDI++   QT     +LG  E+    Q S T + R+
Sbjct: 853  LDFFKFVATYEIGSSFDAIELQRLLDIISLQYQTL---HALGKTEEPPDNQSSPTIDGRN 909

Query: 671  CLSLLNKH--DLGHNEVLQLLHLAPDPAMFVLDFIQ----HWKSQGTG---FEEDNVKCC 721
                  +H  +     +L  LH + DPA  VLD IQ      K  G G    +E +    
Sbjct: 910  LQFPYIEHTNEFISANMLVDLHPSSDPAKVVLDMIQIPIGSEKKGGEGVIIIDESH---- 965

Query: 722  ILVLEKLKEVLPIMNPRVKGEAMKLAVEWKTKMGVGTLNSLEVLVFLQLLGTFELVASFN 781
            I +LE+L  + P + P V+ EA K+A   +  +     NSL +L FL LL  + LV+ FN
Sbjct: 966  IFLLEQLMRISPRVKPHVREEAQKIAFNLEANIRESAENSLTILGFLYLLSIYGLVSHFN 1025

Query: 782  RVEIVELLWTISEHKQAPETCRALGFTD---------------IVATIRFICAFKLTDIA 826
            +  +++L  + ++HKQA E  R LGF D               IVA +RFICA+KL D  
Sbjct: 1026 KDGLLKLFESAAQHKQAVELFRTLGFVDKIFDFVQNLIMKQQHIVA-VRFICAYKLADKI 1084

Query: 827  KPEAIFKQYLD 837
            +P  + +Q+++
Sbjct: 1085 QPVDLLRQHME 1095

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297813019|ref|XP_002874393.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297320230|gb|EFH50652.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  214 bits (545), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 258/978 (26%), Positives = 437/978 (44%), Gaps = 157/978 (16%)

Query: 97   ELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVE---EWLEKLDLKMK----EVGL 149
            E+  K K L LV  +I ECE   + +  EL   +  VE   + LE++D+ ++    EV  
Sbjct: 264  EIEIKTKDLTLVMDKIAECEKLFETRSSELIKTQCEVELKGKQLEQMDIDLERRRGEVSA 323

Query: 150  VEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSL 209
              +  DKS    R L        ++I+ K K+L  +   I E  K+L   E+  +S Q L
Sbjct: 324  EMEHLDKSQTHSREL-------AQEIKRKRKELTAVLDKIAEYGKQLESVEQQLASQQKL 376

Query: 210  IEDYAEELESKEK--------------LYDEIKKSIIQCETKLDCKKKELELTQTSIIEL 255
            +E  + EL SK+K              L +E++++  Q ++K     +ELE  +  I E 
Sbjct: 377  LETRSSELVSKKKELDGLSLDLDLANSLNNEMRETCKQIKSK----GRELEEIERLIQER 432

Query: 256  SLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCI 315
            S         +ES++ ++     EL SKEE+ + + E ++K  ++I  KE       + I
Sbjct: 433  S-------GHIESIKLLLEEHSEELASKEERHNEITEAIRKLSSEIVSKE-------ETI 478

Query: 316  EKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIE 375
            ++ S++  +K+++L   ++ LE    EF  KE EL SV+    +C +  E+K+K L  ++
Sbjct: 479  QQLSEKQLVKQRKLDSTEKRLENTTAEFVIKEKELGSVKDTYRECLQNWEIKEKELKSLQ 538

Query: 376  NSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFE 435
                ++ D                   LK  + KE +   LK +L ER ++L +KE++  
Sbjct: 539  EEIKKIQDS------------------LKDFQSKEAEQVKLKASLMEREKELGLKEKRIR 580

Query: 436  ERVKEFELREKEIESIRKAVEDRS---KNLELKEKKLSNNLHLQVKIEQPESLKGNEGTK 492
             R ++ EL+EK++++  + ++ +    K+ ELK  K   +  L  K +     + N   +
Sbjct: 581  ARSEKIELKEKKLDAREERIDKKDEQLKSTELKLAKCVKDYELNAK-KLASFCQQNNPDQ 639

Query: 493  QLSL-QSCTMITGKNLQLLLNQHLQKHDLVFGEISHTLTKACDPASLVLDAMEGFYPPHS 551
            Q+ L +  ++   K LQLLL  HL+K D +  ++   L  + DPA LVLD ++G    H 
Sbjct: 640  QVDLVRDASVCDEKTLQLLLRGHLKKCDQLHLDVLGALKASSDPAKLVLDTIQGL---HE 696

Query: 552  REGDMEFDVSIIRRTCILLLEQLSSVTPEINPQVRDEAMKVAGEWKKKMRVAEDNSLEVL 611
            R    + D   +RR+ I LLE L +++ E   +V+ EA+K A EWK    V  +N +EVL
Sbjct: 697  RMAVTKLDPDSVRRSSICLLECLMNMSQEPKTEVQVEAIKSATEWKNTTLVKAENPVEVL 756

Query: 612  GFLHLLAAYGLGPSFDGIELESLLDIVAQHRQTSKLRQSLGFAEKA-------------- 657
            GFLH LAA+ L  +FD  ++++L D     +    L ++LG +  A              
Sbjct: 757  GFLHFLAAFSLAYTFDADKVQNLFDAAFLRQYAPSLCEALGVSSLAPVNNVLLLDDKPEQ 816

Query: 658  ---HGLQCSTTREARSCLSLLNKHDLGH---------------NEVLQLLHLAPDPAMFV 699
                 ++ S+   +      +    LG+               NEV   L    DPA +V
Sbjct: 817  QPPEAIRNSSDSRSPDVQETIASSHLGNEDVLLDPEGSASFSPNEVFTGLQGMKDPATYV 876

Query: 700  LDFI-------QHWKSQGTGFEEDNVKCCILVLEKLKEVLPIMNPRVKGEAMKLAVEWKT 752
            L+F+       QH      G  E  VK  I +LE+L  V+   +  V  +A+K+A  W  
Sbjct: 877  LNFVNDELMGAQHRGE--LGLAEPVVKTLIPLLEELPRVVR-SSKHVLSDALKVANLWSW 933

Query: 753  KMG-VGTLNSLEVLVFLQLLGTFELVASFNRVEIVELLWTISEHKQAPETCRALGFTDIV 811
             MG    ++SLE   FLQL+  + LV + ++   +     ++  KQAP+   +LG +  +
Sbjct: 934  MMGNSAQMSSLEAWGFLQLIVAYGLVHATSQENTLRFASYVAHFKQAPKLFESLGLSYAI 993

Query: 812  A--------------TIRFICAFKLTDIAKPEAIFKQYLDDNISDIHRKGNNSSDAKVKA 857
                            IRFI  FKL     P  + K    D I ++            +A
Sbjct: 994  PNVVKQLLDERHYFMAIRFIFYFKLKSNFSPLELLK----DEIVNLRVSAKEERRFDSQA 1049

Query: 858  MDFEVNALTFLIECFKENKLESSLLIENIKQRIVQLEMAKADCRRHSTPAPSATIQLQLA 917
             D +   L  +IE  ++ KL+  L ++ I + +V  E+   +    S+  P    Q+ + 
Sbjct: 1050 EDRDAAKLKDIIELIEDFKLDIDLPVDLIVKFMVPREIQNQNQYVVSSFVPVQPPQVHMQ 1109

Query: 918  SRNNY----------------NIGTSTPTNQPVPSHTNQPQHSGINHSIGFSASREQPQL 961
            + +                   I  ++P  Q +   T Q   S + H         QP  
Sbjct: 1110 ASHTVIHSSYIATHGSNPTFPTILGASPNQQVLDMETYQAGGSTVFHG--------QPSH 1161

Query: 962  QNNYKRPRIEPLTTRAYM 979
            Q  +KRPR++P  +R  +
Sbjct: 1162 QAGFKRPRMDPSVSRPVI 1179

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542460|ref|XP_002512293.1| Protein FRIGIDA, putative [Ricinus communis] gi|223548254|gb|EEF49745.1| Protein FRIGIDA, putative [Ricinus communis]

 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 155/436 (35%), Positives = 241/436 (55%), Gaps = 51/436 (11%)

Query: 255 LSLELHLEEEKLESLQRIV---RLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGI 311
           +S EL L E K +S +R +     R + + S   +   ++++     N I+++  E + I
Sbjct: 7   ISTELQLNELKKQSFRRTLDQLHDRASSILSLTLQWKHIEDQFDSTHNSIDVRVEELHSI 66

Query: 312 RKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHL 371
            K IE++  E+  +EK L+ VQE+++   +E EE+E E   ++K      +EL  +K+ +
Sbjct: 67  HKAIEQKLDEVKKREKDLELVQEAVKLRFSEVEEREKEFALIQK------KELHDRKREI 120

Query: 372 CVIENSAAELS-------------DECESNELEL---------DLIQTMAIGYLKQLKEK 409
             IE S  EL              DE + N L L         D ++ +++  LK LKEK
Sbjct: 121 EWIEKSGKELDSVRVEIEDKLRAVDEVD-NRLTLFNHCIEEKADQVR-LSVSKLK-LKEK 177

Query: 410 EKQFHSLKEALDERWQD-----LEIKERKFEERVKEFELREKEIESIRKAVEDRSKNLEL 464
           E  F        E+  +     L +K+ +  ++ KE EL+EK++E   +  E      EL
Sbjct: 178 ELAFKDENLKEKEKKLEEHCKVLRLKDEEIHKKFKEVELKEKQLEQRYREFE------EL 231

Query: 465 KEKKLSNNLHLQVKIEQPESLKGNEGTKQLSLQSCTMITGKNLQLLLNQHLQKHDLVFGE 524
           KEK+  +N +  VKIE P+    ++     SL     + GK LQ+ LN+  +  D +  E
Sbjct: 232 KEKQKPSNNNTCVKIE-PQITTPSDA----SLYFTVNMDGKALQIFLNER-EYSDSIRDE 285

Query: 525 ISHTLTKACDPASLVLDAMEGFYPPHSREGDMEFDVSIIRRTCILLLEQLSSVTPEINPQ 584
           +   L  + DPA  VLDAM+GFYPPH R+GDMEF   ++RR+CILLLEQL  ++PEI+P 
Sbjct: 286 VFIALGFSSDPAKFVLDAMQGFYPPHLRKGDMEFKAEVVRRSCILLLEQLMKISPEISPL 345

Query: 585 VRDEAMKVAGEWKKKMRVAEDNSLEVLGFLHLLAAYGLGPSFDGIELESLLDIVAQHRQT 644
           VR+EA+K++  W  KM++  ++ LEVLGFL LLA+YGL  +FD  EL + L++V QH  +
Sbjct: 346 VRNEAIKLSFSWMTKMKIDAEHPLEVLGFLQLLASYGLASTFDADELLTQLEVVVQHSLS 405

Query: 645 SKLRQSLGFAEKAHGL 660
             L  +LGFA+K  G+
Sbjct: 406 PGLFHALGFADKISGI 421

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240463|ref|NP_198074.1| Frigida-like protein [Arabidopsis thaliana] gi|2191186|gb|AAB61071.1| contains similarity to tropomyosin and kinesin [Arabidopsis thaliana] gi|332006276|gb|AED93659.1| Frigida-like protein [Arabidopsis thaliana]

 Score =  202 bits (515), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 302/1180 (25%), Positives = 509/1180 (43%), Gaps = 229/1180 (19%)

Query: 10   ELRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSN-------D 62
            E+RL + K   +R++ D+  +QA+ VL   +QW D EEHL  + + LE +         +
Sbjct: 9    EIRLCDVKANNIRKTMDMIKSQASDVLILNLQWCDFEEHLKSASEKLELRFRELVLKEVE 68

Query: 63   ADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLEL--VRKRIGECECELQ 120
              ++   L++RAK +E+ E++  + +  +K   F    +EK+ EL  +RK + EC  E +
Sbjct: 69   LQNRSFALEERAKVVEAAEAE--MGDLEMKASGFRSEVEEKREELGCLRKSLEECSVEER 126

Query: 121  LKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQ-------RRLENLIKDFCE 173
             K G+L+ + + + +    LDLK +E+  +    ++  V+        RR +N  ++  E
Sbjct: 127  SKRGQLSEIVELLRKSQVDLDLKGEELRQMVTHLERYRVEVKEEKEHLRRTDNGRRELEE 186

Query: 174  QIELKEKDLRKIRSSIEECEK--------------ELVMKEKHASSLQSLIEDYA----- 214
            +IE K KDL  + + I +C+K              E+ +KEK    ++  +E Y      
Sbjct: 187  EIERKTKDLTLVMNKIVDCDKRIETRSLELIKTQGEVELKEKQLDQMKIDLEKYCVDVNA 246

Query: 215  ----------------EELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSI------ 252
                            EE+E K K    +   I +CE   + +  EL  TQ  +      
Sbjct: 247  EKKNLGRTQTHRRKLEEEIERKTKDLTLVMDKIAECEKLFERRSLELIKTQGEVELKGKQ 306

Query: 253  ---IELSLELHLEE-----EKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELK 304
               +++ LE H  E     E LE  Q   R    E++ K ++L A+ ++  +Y   IEL 
Sbjct: 307  LEQMDIDLERHRGEVNVVMEHLEKSQTRSRELAEEIERKRKELTAVLDKTAEYGKTIELV 366

Query: 305  EREFNGIRKCIEKRSQELTLKEKQLKCVQESLE---GCRNEFEE-------KENELISVE 354
            E E    +K ++ RS EL  K+K+L  +   LE      NE +E       K  EL  +E
Sbjct: 367  EEELALQQKLLDIRSSELVSKKKELDGLSLDLELVNSLNNELKETVQRIESKGKELEDME 426

Query: 355  KLIDKCSEELE--------------------------LKKKHLCVI--ENSAAELSDECE 386
            +LI + S   E                          ++K  L ++  E +  +LS++  
Sbjct: 427  RLIQERSGHNESIKLLLEEHSEELAIKEERHNEIAEAVRKLSLEIVSKEKTIQQLSEKQH 486

Query: 387  SNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKE----------RKFEE 436
            S + +LD  +        +L  KE +  S+K+   E  Q+ EIKE          +K ++
Sbjct: 487  SKQTKLDSTEKCLEETTAELVSKENELCSVKDTYRECLQNWEIKEKELKSFQEEVKKIQD 546

Query: 437  RVKEFELREKEI----ESI----------RKAVEDRSKNLELKEKKL-SNNLHLQVKIEQ 481
             +K+F+ +E E+    ES+          +K +  RS+ +ELK+KKL +    L  K EQ
Sbjct: 547  SLKDFQSKEAELVKLKESLTEHEKELGLKKKQIHVRSEKIELKDKKLDAREERLDKKDEQ 606

Query: 482  PESL----------------------KGNEGTKQLSL-QSCTMITGKNLQLLLNQHLQKH 518
             +S                       + N   +Q+ L +  ++   K LQLLL  HL+K 
Sbjct: 607  LKSAEQKLAKCVKEYELNAKKLASFCQQNNPDQQVDLVRDASVCDEKTLQLLLRGHLKKC 666

Query: 519  DLVFGEISHTLTKACDPASLVLDAMEGFYPPHSREGDMEFDVSIIRRTCILLLEQLSSVT 578
            D +  ++   L  + DPA LVL+ ++     H +    + D   +RR  I LLE L  ++
Sbjct: 667  DQLHLDVLRALKASSDPAKLVLNTIQRL---HEKMAVTKLDPDSVRRGSICLLECLMDMS 723

Query: 579  PEINPQVRDEAMKVAGEWKKKMRVAEDNSLEVLGFLHLLAAYGLGPSFDGIELESLLDIV 638
            PE   +V+ EA+K   EWK    V  +N +EVLGFLH L+A+ L  +FD  ++++L D  
Sbjct: 724  PEPKTEVQVEAIKSVTEWKNTTLVKAENPVEVLGFLHFLSAFSLAYTFDADKVQNLFDAA 783

Query: 639  AQHRQTSKLRQSLGFAE-------------------KAHGLQCSTTREARSCLSLLNKHD 679
               +    L ++LG +                    +A  +  S +R      ++ + H 
Sbjct: 784  FLRQYAPSLCEALGVSSLAPVNNVLSLDDKPEQQPPEAPIINSSDSRSTNVQETIASSH- 842

Query: 680  LGH---------------NEVLQLLHLAPDPAMFVLDFIQH----WKSQG-TGFEEDNVK 719
            LG+               NEV   L    DPA +VL+ +       + +G  G  E  +K
Sbjct: 843  LGNVDVLLDPEGSTSFSPNEVFTGLQGMIDPASYVLNVVNDELLGAQQRGELGLAEPVIK 902

Query: 720  CCILVLEKLKEVLPIMNPRVKGEAMKLAVEWKTKMGVGT-LNSLEVLVFLQLLGTFELVA 778
              I +LE+L  V+   +  +  +A+++A  W   MG  T ++ LE   FLQL+  + LV 
Sbjct: 903  TLIPLLEELPRVVK-SSKHLLSDALQVATRWSWMMGNSTQMSPLEAWGFLQLIVAYGLVH 961

Query: 779  SFNRVEIVELLWTISEHKQAPETCRALGFTDIVA--------------TIRFICAFKLTD 824
            + ++   +     ++  KQAP+   +LG +  +                IRFI  FKL  
Sbjct: 962  ATSQDNTLRFASYVAHFKQAPKLFESLGLSYAMPNLVKKLLDERHYFMAIRFIFYFKLKF 1021

Query: 825  IAKPEAIFKQYLDDNISDIHRKGNNSSDAKVKAMDFEVNALTFLIECFKENKLESSLLIE 884
               P  + K    D I  +            +A D +   L  +IE  ++ KL+  L +E
Sbjct: 1022 NFSPLELLK----DEIITLRVSTKEKRRLDSQAEDRDAAKLKDIIELIEDFKLDIDLPVE 1077

Query: 885  NIKQRIVQLEMAKADCRRHST--PAPSATIQLQLASRNNYNIGTS---TPTNQPVPSHTN 939
             I + +V  E    +    S+  P  S  + +Q +  +N    TS   +P  Q +   T 
Sbjct: 1078 LIVKFMVPRENQNENQYVVSSFVPVQSPQVHMQASHGSNPTFPTSLGTSPNQQVLDLETY 1137

Query: 940  QPQHSGINHSIGFSASREQPQLQNNYKRPRIEPLTTRAYM 979
            Q        SI F A   Q      YKR R++P  +R  +
Sbjct: 1138 QA-----GGSIAFQA---QSSHHTGYKRTRMDPSVSRPVI 1169

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130856|ref|XP_002328393.1| predicted protein [Populus trichocarpa] gi|222838108|gb|EEE76473.1| predicted protein [Populus trichocarpa]

 Score =  201 bits (511), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 217/751 (28%), Positives = 366/751 (48%), Gaps = 164/751 (21%)

Query: 10  ELRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSK--- 66
           EL+L + +++   RS +  H QA+S+L+ T+QWK++E H + +  S+E  +    +K   
Sbjct: 8   ELKLTKLRQQSFNRSLNEIHEQASSILSLTLQWKNIETHFESTFNSIEDSAKALRTKERK 67

Query: 67  ----------------------IRLLD----QRAKEIESKESDLVLAERRIKECNFELAC 100
                                 I+L D    +  KEIE KE D     R +      L  
Sbjct: 68  LEEREKEFESKEKEFEERCEEFIKLRDAEVEEHYKEIELKEKDFEERRREVDSERKRLEV 127

Query: 101 KEKQLE-----------------------------LVRKRIGECECELQLKEGELNLVKK 131
           + K++E                             + RK++ E    + LKE +    +K
Sbjct: 128 RPKEVEEREELVRKKFVEEIELKEKEIEERRKEIEVERKKVVEG---IMLKEKKNEERRK 184

Query: 132 SVEEWLEKL--DLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSI 189
            +E   +KL  +L++KE  L+E+  +  L +++     IK F E++ELKEK L       
Sbjct: 185 EIEVERKKLVEELELKEKQLLEQQKEVELENKK-----IKKFFEELELKEKQLL------ 233

Query: 190 EECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQ 249
            E +KE+ ++ K        I+ + EELESKEKL +E  + +++ E   + ++ ELEL +
Sbjct: 234 -EQQKEVELENKK-------IKKFFEELESKEKLVEE--RRLLKEENSKEWRR-ELELKE 282

Query: 250 TSIIELSLELH----LEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKE 305
            +  +   E +    L+E+K+E   R V LRE  ++ +  +++  +  +++ F ++ +K+
Sbjct: 283 INFGQQVRERYDEIELKEKKVEEEFREVALREERVEKRFREVEEKERRVRELFKEVRVKD 342

Query: 306 REFNGIRKCIEKRSQELTLKEKQL----KCVQESLEGCRNEFEEKENELISVEKLIDKCS 361
            EF   RK +E + +E+  + K++    + V E L+    +  + E  L    K +    
Sbjct: 343 DEFRERRKGVELKGREVEERIKEIGFKDRKVGERLKEVGLKDRKAEERL----KEVGLKG 398

Query: 362 EELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALD 421
            E+E + K + ++E +  + S+E E N                            +  L+
Sbjct: 399 REVEERVKEIALMEKNVGKRSEEVELN----------------------------RRKLE 430

Query: 422 ERWQDLEIKERKFEE--------------RVKEFELREKEIESIR--------------- 452
           E +++LE+K R+ EE              R + F+L+ K+IE ++               
Sbjct: 431 EGFRELELKSREVEEIIKGVELKEKELEERCRGFDLKGKQIEEVQLKEKELEERLREVEM 490

Query: 453 --KAVEDRSKNLELKEKKLSNNLHLQVKIEQPE-SLKGNEGTKQLSLQSCTMITGKNLQL 509
             K   +R K  ELKEK++++  + +VK E  + S+  N       L     + GK LQ+
Sbjct: 491 ENKKCLERIKEFELKEKQVADACNARVKSETVDYSMDAN-------LHFSVKMDGKALQI 543

Query: 510 LLNQHLQKHDLVFGEISHTLTKACDPASLVLDAMEGFYPPHSREGDMEFDVSIIRRTCIL 569
           LLN+  +  + +  E+S  L  + DPA LVLDAMEGFYPPH REGD+EF   +++R+C L
Sbjct: 544 LLNKRCKHDEKMKNEVSIALGLSSDPAKLVLDAMEGFYPPHLREGDVEFKEVVVKRSCNL 603

Query: 570 LLEQLSSVTPEINPQVRDEAMKVAGEWKKKMRVAEDNSLEVLGFLHLLAAYGLGPSFDGI 629
           LLEQL+ ++P I P VR EA K+A  W  KM V + ++L+V+GF +LLAAYGL  +FD  
Sbjct: 604 LLEQLTKISPTIKPHVRKEATKLAFLWMTKMTVDDQHNLDVMGFFYLLAAYGLASAFDSD 663

Query: 630 ELESLLDIVAQHRQTSKLRQSLGFAEKAHGL 660
           EL S L I+A++RQ  +  + L   +K  G 
Sbjct: 664 ELISRLVIIARNRQIPEFLRVLELGDKIPGF 694

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130848|ref|XP_002328391.1| predicted protein [Populus trichocarpa] gi|222838106|gb|EEE76471.1| predicted protein [Populus trichocarpa]

 Score =  193 bits (490), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 198/677 (29%), Positives = 359/677 (53%), Gaps = 86/677 (12%)

Query: 10  ELRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKIRL 69
           EL+ +E K+EI+R++ +    +A+SVL   +QWK+LE+H D S++ L        ++   
Sbjct: 8   ELKNSELKQEIVRKTMNELQEKASSVLLLCLQWKELEDHFD-SIRGL------IQAEKEE 60

Query: 70  LDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLV 129
           ++++ + +  +E ++ + E+R++E   E+  K++  +  R+       EL+LKE  +N  
Sbjct: 61  VERKERVVREREREVGVKEKRVEELVNEVTLKDQDFKDWRR-------ELELKE--INFG 111

Query: 130 KKSVEEW------LEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLR 183
           +K  E +       +K++ + +EV L E+  +K   +    E  + +  +++ +K+ + R
Sbjct: 112 QKVRERYDEIELKEKKVEEEFREVALREERAEKRFKEAEENERRVGELFKEVRVKDDEFR 171

Query: 184 KIRSSI--------------EECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKK 229
           + R  +              EE  KE+ +K++        +E+   EL  K++  +E  K
Sbjct: 172 EWRKGVELKEKELELKGREVEERIKEIRLKDRK-------VEESLNELGFKDRKVEERIK 224

Query: 230 SIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDA 289
            I   + K++ + KE+      + E   E+ L++  +E   + V L++ +++ + +++ +
Sbjct: 225 EIGLKDRKVEERLKEIGFKDRKLGERLKEVGLKDRMVEERLKEVGLKDRKVEERLKEIGS 284

Query: 290 MKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQL--KCVQESLEGCRNEFEEKE 347
              ++ +   ++  K+R        +E+R +E+ LK++++  +  +  L+G   E EE+ 
Sbjct: 285 KDRKVGERLKEVGWKDR-------MVEERLKEVGLKDRKVEERLKEVGLKG--REVEERV 335

Query: 348 NELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLK 407
            E+  +EK + K SEE+EL ++ L            E    +LEL   +   I    +LK
Sbjct: 336 KEIALMEKNVGKRSEEVELNRRKL------------EEGFRKLELKSREVEEIIEGVELK 383

Query: 408 EKEKQFHSLKEALDERWQDLEIKERKFEE---RVKEFELREKEIESIRKAVEDRSKNLEL 464
           EK          L+ER +  + K ++ EE   + KE E + +E+E   K   +R K  EL
Sbjct: 384 EK---------ILEERCRRFDFKGKQIEEVQLKEKELEEKLREVEMENKKCLERIKEFEL 434

Query: 465 KEKKLSNNLHLQVKIEQPE-SLKGNEGTKQLSLQSCTMITGKNLQLLLNQHLQKHDLVFG 523
           KEK++++  + +VK E  + S+  N       L     + GK LQ+LLN+  +  + +  
Sbjct: 435 KEKQVADACNARVKSETVDYSMDAN-------LHFSVKMDGKALQILLNKRCKHDEKMKN 487

Query: 524 EISHTLTKACDPASLVLDAMEGFYPPHSREGDMEFDVSIIRRTCILLLEQLSSVTPEINP 583
           E+S  L  + DPA LVLDAMEGF+PPH REGD+EF   +++R+C LLLEQL+ ++P I P
Sbjct: 488 EVSIALGLSSDPAKLVLDAMEGFHPPHLREGDVEFKEVVVKRSCNLLLEQLTKISPTIKP 547

Query: 584 QVRDEAMKVAGEWKKKMRVAEDNSLEVLGFLHLLAAYGLGPSFDGIELESLLDIVAQHRQ 643
            VR EA K+A  W   M V   ++L+VLGF +LLAAYGL  +FD  EL S L I+A+++Q
Sbjct: 548 HVRKEATKLAFLWMIMMTVDGQHNLDVLGFFNLLAAYGLASAFDSDELISRLVIIARNKQ 607

Query: 644 TSKLRQSLGFAEKAHGL 660
           T +  + L   +K  G 
Sbjct: 608 TPEFLRVLELGDKIPGF 624

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1046
TAIR|locus:2181241	1181	AT5G27220 "AT5G27220" [Arabido	0.381	0.337	0.255	8.9e-49
TAIR|locus:2181251	948	AT5G27230 [Arabidopsis thalian	0.131	0.145	0.354	2.6e-35
TAIR|locus:1005716104	558	AT5G48385 "AT5G48385" [Arabido	0.180	0.338	0.306	5.5e-17
TAIR|locus:2082214	269	AT3G12190 "AT3G12190" [Arabido	0.222	0.866	0.292	1.4e-18
TAIR|locus:2171327	470	FRL1 "FRIGIDA like 1" [Arabido	0.238	0.529	0.287	2.6e-18
TAIR|locus:2031875	1128	LINC2 "LITTLE NUCLEI2" [Arabid	0.373	0.346	0.265	2.2e-15
WB|WBGene00011696	1205	eea-1 [Caenorhabditis elegans	0.326	0.282	0.245	1.9e-14
DICTYBASE|DDB_G0286985	1024	zipA "zipper-like domain-conta	0.382	0.390	0.192	3.2e-14
SGD|S000002216	1790	USO1 "Protein involved in the	0.395	0.231	0.213	5.2e-14
TAIR|locus:2019529	1132	LINC1 "AT1G67230" [Arabidopsis	0.358	0.331	0.230	5.6e-14

TAIR|locus:2181241 AT5G27220 "AT5G27220" [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 8.9e-49, Sum P(3) = 8.9e-49
 Identities = 113/443 (25%), Positives = 212/443 (47%)

Query:     8 KEELRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSK- 66
             + E+RL + K   +R++ D+  +QA+ VL   +QW D EEHL  + + LE +  +   K 
Sbjct:     7 ENEIRLCDVKANNIRKTMDMIKSQASDVLILNLQWCDFEEHLKSASEKLELRFRELVLKE 66

Query:    67 IRL------LDQRAKEIESKESDLVLAERRIKECNFELACKEKQLEL--VRKRIGECECE 118
             + L      L++RAK +E+ E+++   +  +K   F    +EK+ EL  +RK + EC  E
Sbjct:    67 VELQNRSFALEERAKVVEAAEAEM--GDLEMKASGFRSEVEEKREELGCLRKSLEECSVE 124

Query:   119 LQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQ-------RRLENLIKDF 171
              + K G+L+ + + + +    LDLK +E+  +    ++  V+        RR +N  ++ 
Sbjct:   125 ERSKRGQLSEIVELLRKSQVDLDLKGEELRQMVTHLERYRVEVKEEKEHLRRTDNGRREL 184

Query:   172 CEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSI 231
              E+IE K KDL  + + I +C+K +  +     SL+ LI+   E +E KEK  D++K  +
Sbjct:   185 EEEIERKTKDLTLVMNKIVDCDKRIETR-----SLE-LIKTQGE-VELKEKQLDQMKIDL 237

Query:   232 IQCETKLDCKKKELELTQTSIIXXXXXXXXXXXXXXXXQRIVRLRENELDSKEEKLDAMK 291
              +    ++ +KK L  TQT                    + + L  +++   E+  +   
Sbjct:   238 EKYCVDVNAEKKNLGRTQTH-------RRKLEEEIERKTKDLTLVMDKIAECEKLFERRS 290

Query:   292 EEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELI 351
              E+ K   ++ELK ++   +   +E+   E+ +  + L+  Q        E E K  EL 
Sbjct:   291 LELIKTQGEVELKGKQLEQMDIDLERHRGEVNVVMEHLEKSQTRSRELAEEIERKRKELT 350

Query:   352 SV-----E--KLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLK 404
             +V     E  K I+   EEL L++K L +  +       E +   L+L+L+ ++    LK
Sbjct:   351 AVLDKTAEYGKTIELVEEELALQQKLLDIRSSELVSKKKELDGLSLDLELVNSLN-NELK 409

Query:   405 Q----LKEKEKQFHSLKEALDER 423
             +    ++ K K+   ++  + ER
Sbjct:   410 ETVQRIESKGKELEDMERLIQER 432

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2181251 AT5G27230 [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 2.6e-35, Sum P(4) = 2.6e-35
 Identities = 51/144 (35%), Positives = 73/144 (50%)

Query:   674 LLNKHDLGHNEVLQ-LLHLAPDPAMFVLDFIQHWKSQGT--GFEEDNV---KCCILVLEK 727
             L+ K  L  +E L   L   PDPA   LD         T  G+E   +     C L+L +
Sbjct:   556 LVEKQPLKESEDLSNALKCTPDPAKLFLDTSMALCPTNTEGGYEFKMLITSASCSLLLNQ 615

Query:   728 LKEVLPIMNPRVKGEAMKLAVEWKTKMGVGTLNSLEVLVFLQLLGTFELVASFNRVEIVE 787
             LK++LP +   VKG+A KLAV WK K+     + LEV+ FLQ LG F +V+ F   +++ 
Sbjct:   616 LKKLLPKIGHPVKGDAKKLAVYWKDKIAKSKRDQLEVICFLQFLGIFGIVSEFKADDLLG 675

Query:   788 LLWTISEHKQAPETCRALGFTDIV 811
             LL        +P+ C+ LG  D +
Sbjct:   676 LLDNSYWQTVSPDLCQFLGLDDAI 699

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1005716104 AT5G48385 "AT5G48385" [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 5.5e-17, Sum P(2) = 5.5e-17
 Identities = 65/212 (30%), Positives = 104/212 (49%)

Query:   718 VKCCILVLEKLKE--VLPIMNPRVKGEAMKLAVEWKT-----KMGVGTLNSLEVLVFLQL 770
             ++C  ++L  L    +  +++  VK  A  +A  W        M     NSLE   FLQL
Sbjct:   253 MECLSILLSGLDRNCLAVVLSQNVKHRAKTIAEGWNPLLESLDMDACNGNSLEAHAFLQL 312

Query:   771 LGTFELVASFNRVEIVELLWTISEHKQAPETCRALGFTDI--------------VATIRF 816
             L TF +VA F   E+++L+  +S  +QA E CR+LG  +               +  +  
Sbjct:   313 LATFAIVADFKEDELLKLIPMVSRRRQAAELCRSLGLAEKMPGVIEVLVNSGKQIDAVNL 372

Query:   817 ICAFKLTDIAKPEAIFKQYLDD--NISDIHRKGNNSSDAKVKAMDFEVNALTFLIECFKE 874
               AF+LT+   P ++ K YL +    S   R GN S   + +  + E+  L  +I+C +E
Sbjct:   373 AFAFELTEQFSPVSLLKSYLIEARRSSPQGRPGNASPAVQDEFNERELIGLKTVIKCIEE 432

Query:   875 NKLESSLLIENIKQRIVQLEMAKADCRRHSTP 906
             + LE    +E + +RI+QLE AKAD +R + P
Sbjct:   433 HSLEEQYPVEPLHKRILQLEKAKADKKRATEP 464

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2082214 AT3G12190 "AT3G12190" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 74/253 (29%), Positives = 138/253 (54%)

Query:     9 EELRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKIR 68
             ++LR+A+ KKE LRRS   A ++A+ VL+FT+ W+DLE H D     L K+S + +SK +
Sbjct:     4 KKLRVAKWKKERLRRSLMKAESKASDVLSFTLSWRDLESHFDSIESDLVKRSQEIESKEK 63

Query:    69 LLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNL 128
              L++R+ E+ESK   L   E+R +E N     + +  E  ++++   + E++ +E +  L
Sbjct:    64 HLEKRSHELESKGKIL---EKRAREINTADGFR-RDFEEKQRKLDRLKREIESEEKKRFL 119

Query:   129 VKKSVEEWLEKLDLKM--KEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIR 186
             V+K   E   K +LK   ++V  ++K ND  L D +  + + ++   Q E  E+ L+K +
Sbjct:   120 VQKLNRE--RKFELKRTREQVEALQK-NDMKL-DVKHSKEMSEELLVQQEKYEEILKKKK 175

Query:   187 ---SSIEECEKELVMKEKHASSLQSLIEDYAEEL--ESKEKLY-----DEIKKSIIQCET 236
                  +++C ++L ++E     +   +    EEL  E K+ L      +E ++ +     
Sbjct:   176 LEEKKLKDCTRDLALREGDLRWVSMRMTKRCEELRWEKKKNLVLCKRNEEAERKLKHLNR 235

Query:   237 KLDCKKKELELTQ 249
              L+ K+KE++L +
Sbjct:   236 ALEEKQKEVDLIE 248

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2171327 FRL1 "FRIGIDA like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 2.6e-18, Sum P(2) = 2.6e-18
 Identities = 79/275 (28%), Positives = 132/275 (48%)

Query:   682 HNEVLQLLHLAPDPAMFVLDFIQ--HWKSQGTGFEEDNVKCCILVLEKLKEVLPIMNPRV 739
             + EV   +  +PD A  VLD I+  ++    +G   D  +  +L++E L E+   +    
Sbjct:   128 NQEVSAAIRYSPDTASMVLDAIEGSNYTPSSSGRSFDVRRVFVLLMEVLIEINANITVDT 187

Query:   740 KGEAMKLAVEWKTKMGVGTLNSLEVLVFLQLLGTFELVASFNRVEIVELLWTISEHKQAP 799
             +  A KLA  WK+K+GV      E LVFL L+  FEL + F+  E+ + ++ I+++KQA 
Sbjct:   188 RNRAKKLAYHWKSKVGV---KPFEALVFLHLVAAFELGSEFDTEELSDYVFMIAKYKQAT 244

Query:   800 ETCRALGFT-----DIVAT----------IRFICAFKLTDIAKPEAIFKQYLDDNISDIH 844
               C  +G        ++ T          ++F+    +TD  +P  + K Y+ D      
Sbjct:   245 LVCNKIGVDRKRVGKLIKTLLDSGKPILAVKFMYECGMTDEFEPIPVLKSYIKDCREAAL 304

Query:   845 R---KGNNSSDAKVKAMDFEVNALTFLIECFKENKLESSLLIENIKQRIVQLEMAKADCR 901
             R   + N S  ++ +A D EV+AL  LI+  K+  LES    E +++R+ +LE  KA  +
Sbjct:   305 RVCVEDNYSLKSQNEASDKEVSALKPLIKIIKDQNLESEFTQEKVEERVEELEKNKALRK 364

Query:   902 RHSTPAPSATIQLQLASRNNYNIGTSTPTNQPVPS 936
             R++T  P    Q +   R          +  PVPS
Sbjct:   365 RNTTNPPKQEPQQKGKKRTR---DCKNGSQVPVPS 396

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2031875 LINC2 "LITTLE NUCLEI2" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
 Identities = 118/445 (26%), Positives = 213/445 (47%)

Query:    11 LRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKIRLL 70
             L   E ++E LR++  L   Q    L   ++ +  EE+  I + S E +  +A++ +  +
Sbjct:   142 LTTVEQREENLRKALGL-EKQCVQELEKALR-EIQEENSKIRLSS-EAKLVEANALVASV 198

Query:    71 DQRAKEIESK--ESDLVLAERRIKECNFELACKE---KQLELVRKRIGECECELQLKEGE 125
             + R+ ++E+K   ++  LAE   K    +L  KE   ++  L ++R+   + E +  EG 
Sbjct:   199 NGRSSDVENKIYSAESKLAEATRKSSELKLRLKEVETRESVLQQERLSFTK-ERESYEGT 257

Query:   126 LNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDL--- 182
                 ++ + EW +KL  + KE  + E+  +   ++QR  E  + +  ++++LKEK+L   
Sbjct:   258 FQKQREYLNEWEKKL--QGKEESITEQKRN---LNQR--EEKVNEIEKKLKLKEKELEEW 310

Query:   183 -RKIRSSI---EECEK-------ELVMKEKHASSLQSLIEDYAEELES-KEKLY----DE 226
              RK+  S+   +E E+       EL  KEK A +LQ  +     EL + +EKL      E
Sbjct:   311 NRKVDLSMSKSKETEEDITKRLEELTTKEKEAHTLQITLLAKENELRAFEEKLIAREGTE 370

Query:   227 IKKSIIQCETKLDCKKKELELTQTSIIXXXXXXXXXXXXXXXXQRIVRLRENELDSKEEK 286
             I+K I   +  L  K  E EL    I                 Q++      E+D  EEK
Sbjct:   371 IQKLIDDQKEVLGSKMLEFELECEEIRKSLDKELQRKIEELERQKV------EIDHSEEK 424

Query:   287 LDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQ-------ELTLKEKQLKCVQESLEGC 339
             L+   + M K F+ +  KE +     K I++R +        L+L+++QL   +ESLE  
Sbjct:   425 LEKRNQAMNKKFDRVNEKEMDLEAKLKTIKEREKIIQAEEKRLSLEKQQLLSDKESLEDL 484

Query:   340 RNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMA 399
             + E E+   E+   E++I++  + LE+KK+         +EL  + E + +  + + +  
Sbjct:   485 QQEIEKIRAEMTKKEEMIEEECKSLEIKKEEREEYLRLQSELKSQIEKSRVHEEFL-SKE 543

Query:   400 IGYLKQLKEK-EKQFHSLKEALDER 423
             +  LKQ KE+ EK++    E LDE+
Sbjct:   544 VENLKQEKERFEKEW----EILDEK 564

GO:0005634 "nucleus" evidence=ISM

GO:0005654 "nucleoplasm" evidence=IDA

GO:0006997 "nucleus organization" evidence=IGI

GO:0006342 "chromatin silencing" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

WB|WBGene00011696 eea-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 225 (84.3 bits), Expect = 1.9e-14, P = 1.9e-14
 Identities = 89/362 (24%), Positives = 165/362 (45%)

Query:     6 NNKEELRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADS 65
             N+ +E +LAES+K+  +   +L    A+ V N T+Q   L+E+    M+ +      A  
Sbjct:   453 NDLKE-KLAESEKKATKYKNELKE-HADLVENLTLQLNKLQENSKDLMEKISAGEGGAKM 510

Query:    66 KIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGE 125
              I  L+Q   ++ +   +L  +  + K+ + EL  K  +LE   K++ + E     KE +
Sbjct:   511 AIEQLEQEKVKLTN---ELQTSSEKTKKASGELEAKISELE---KKLRDAEASRTDKEQK 564

Query:   126 LNLVKKSVEEWLEKLDLKMKEVG--LVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLR 183
                 K+S E  L + + ++K  G   VE   +     Q+  +  +K   + +   EK+L 
Sbjct:   565 WKQEKESFERKLAEAEDEIKRKGERFVEMEKEMEEERQKATDRTLK-LKDALVNSEKNLE 623

Query:   184 KIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKK 243
              I+   E+ EK +  K+ H    +  IED  ++LE  EK   E++ S+   +T +  K+ 
Sbjct:   624 TIKKESEDREKIVREKDAHLEENKKRIEDAVQKLEEAEKRARELEASVSSRDTTVSTKES 683

Query:   244 ELELTQTSIIXXXXXXXXXXXXXXXXQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIEL 303
             EL     S +                Q  V    NE+  K+++++ +  EM+      + 
Sbjct:   684 EL-----SELKGKLTESNSFIEELKVQ--VEKVSNEISEKQQEVENLMAEMRDKEAHWKT 736

Query:   304 KEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEE 363
             K  EF       ++ ++E +     LK VQE L   +    E++N+LISV+  +++   E
Sbjct:   737 KRDEFEAQMLRNQEDNEEAS---STLKSVQEQLMKEKETSGEEKNQLISVKSQLEELKTE 793

Query:   364 LE 365
             +E
Sbjct:   794 VE 795

GO:0046872 "metal ion binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006897 "endocytosis" evidence=IMP

GO:0030139 "endocytic vesicle" evidence=IDA

GO:0005769 "early endosome" evidence=IDA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=ISS;IMP

DICTYBASE|DDB_G0286985 zipA "zipper-like domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 222 (83.2 bits), Expect = 3.2e-14, P = 3.2e-14
 Identities = 84/437 (19%), Positives = 208/437 (47%)

Query:    15 ESKK--EILRR--SYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKIRLL 70
             E K+  E+L R   Y+  +       +F ++   L + L+      +  +N+  ++I  L
Sbjct:   391 EKKRTAELLERLEMYEKMNKNITDEKDFQIE--KLVDQLEAKQSEQQTTTNNLQNEISQL 448

Query:    71 DQR--------AKEIESKESDLVLAERRIKECNFELACKEKQL-ELVRKRIG--ECECE- 118
              Q+        ++ ++SK ++L   +   ++   +L  K+ +L E  +K+    E + E 
Sbjct:   449 KQQLASNQSTESQALQSKITELSQLQSEFEKLQNQLQSKDSELLETSKKQSALLEQQSED 508

Query:   119 LQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELK 178
              Q K+ +L  V+ ++++ L++L  K +E+      N KS ++Q+  ++  KD  ++++  
Sbjct:   509 SQSKDEKLKSVELNLQQTLQQLQSKDQEL-----QNVKSQLEQQSEDSESKD--QKLKSV 561

Query:   179 EKDLRKIRSSIEECEKELVMKEKHASS----LQSLIEDYAEELESKEKLYDEIKKSIIQC 234
             E  L++    +++ + +L  + +H  S    L+S+  +  ++L+SK+      K   ++C
Sbjct:   562 ELTLQQTLQQLQDVKSQLEQQSEHNESKDEKLKSIELNLQQQLQSKDSELSS-KDEQLKC 620

Query:   235 -ETKLDCKKKELELTQTSIIXXXXXXXXXXXXXXXXQRIVRLRENELDSKEEKLDAMKEE 293
              E++L   K++L  +Q+S                  +  ++ ++ +L +K+ ++ +++ +
Sbjct:   621 LESELSSVKEQLS-SQSSNTDSELSSVKDQLLSKDSE--LKSKDEQLSNKDSQIKSIESD 677

Query:   294 MKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISV 353
             ++   + +  K++E    +  +  + ++L+ K+ Q+K ++  L+  +++   K+ EL S 
Sbjct:   678 LQSVKDQLSSKDQELQSTKDQLSSKDEQLSNKDTQIKSIESDLQSVKDQLSSKDQELQST 737

Query:   354 EKLIDKCSEELELKKKHLCVIENSAAELSDE--CESNELE-LDLIQTMAIGYLKQLKEKE 410
             +  +    +EL+  K  L   +       D+  C+S+  + L    T       QL  K+
Sbjct:   738 KDQLSSKDQELQSTKDQLSTKDQELQSAKDQLSCQSSTTDQLSAKDTELQSTKDQLSSKD 797

Query:   411 KQFHSLKEALDERWQDL 427
              +  S+K+ L  +  +L
Sbjct:   798 SELQSIKDQLSTKDSEL 814

GO:0005615 "extracellular space" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

SGD|S000002216 USO1 "Protein involved in the ER to Golgi transport step of secretion" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 223 (83.6 bits), Expect = 5.2e-14, P = 5.2e-14
 Identities = 94/440 (21%), Positives = 200/440 (45%)

Query:     1 MK-NCDN-NKEELRLAESKKEILRR--SYDLAHAQANSVL-NFTVQWKDLEEHLDISMKS 55
             MK  C+N +KE+  +++   E   R  S+D   A+    L +    +KD++   +  +K+
Sbjct:   925 MKIQCNNLSKEKEHISKELVEYKSRFQSHDNLVAKLTEKLKSLANNYKDMQAENESLIKA 984

Query:    56 LEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKE-KQLELVRKRI-G 113
             +E+  N++  ++  L  +   + S+E +    ER   E N E   K    LE  ++ I  
Sbjct:   985 VEESKNESSIQLSNLQNKIDSM-SQEKENFQIERGSIEKNIEQLKKTISDLEQTKEEIIS 1043

Query:   114 ECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCE 173
             + +      E +++L+K+ +E      D  + ++  + K+ ++   +    +NL  +   
Sbjct:  1044 KSDSSKDEYESQISLLKEKLETATTANDENVNKISELTKTREELEAELAAYKNLKNELET 1103

Query:   174 QIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQ 233
             ++E  EK L++++ + E  ++E +  EK A+  +  +      LES EK ++++   + +
Sbjct:  1104 KLETSEKALKEVKENEEHLKEEKIQLEKEATETKQQLNSLRANLESLEKEHEDLAAQLKK 1163

Query:   234 CETKLDCKKKEL--ELTQTS--IIXXXXXXXXXXXXXXXXQRIVRLR----ENELDSKEE 285
              E ++  K+++   E++Q +  I                 +  V+      E + + K+ 
Sbjct:  1164 YEEQIANKERQYNEEISQLNDEITSTQQENESIKKKNDELEGEVKAMKSTSEEQSNLKKS 1223

Query:   286 KLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKC-VQES----LEGCR 340
             ++DA+  ++K+     E  E       K +E  S+ + +KE Q +C  +E     LE   
Sbjct:  1224 EIDALNLQIKELKKKNETNEASLLESIKSVE--SETVKIKELQDECNFKEKEVSELEDKL 1281

Query:   341 NEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAI 400
                E+K ++ + ++K  +K  EEL+ K   L +       LS   E +E EL  ++  + 
Sbjct:  1282 KASEDKNSKYLELQKESEKIKEELDAKTTELKIQLEKITNLSKAKEKSESELSRLKKTSS 1341

Query:   401 GYLKQLKEKEKQFHSLKEAL 420
                ++ K  E+Q   LK  +
Sbjct:  1342 ---EERKNAEEQLEKLKNEI 1358

GO:0015031 "protein transport" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA;IDA

GO:0048193 "Golgi vesicle transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISM

GO:0012507 "ER to Golgi transport vesicle membrane" evidence=IDA

GO:0048211 "Golgi vesicle docking" evidence=IDA

GO:0035493 "SNARE complex assembly" evidence=IMP

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IMP

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

TAIR|locus:2019529 LINC1 "AT1G67230" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 5.6e-14, Sum P(2) = 5.6e-14
 Identities = 93/404 (23%), Positives = 184/404 (45%)

Query:    33 NSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIK 92
             N+ + FT   K L E  +  ++S+E++S + ++K+R +D +  E+  K SD+   ER+ K
Sbjct:   144 NAEIKFTADSK-LTE-ANALVRSVEEKSLEVEAKLRAVDAKLAEVSRKSSDV---ERKAK 198

Query:    93 ECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVG---- 148
             E    +  +E  L+  R+R      E +  E  L+  ++ + EW  KL    + V     
Sbjct:   199 E----VEARESSLQ--RERFSYI-AEREADEATLSKQREDLREWERKLQEGEERVAKSQM 251

Query:   149 LVEKSNDKSLVDQRRLENLIKDFCE---QIELKEKDLRKIRSSIEECEKELVMKEKHASS 205
             +V++  D++    + ++   K+  E   +I+     ++K+   +    K+L ++E+    
Sbjct:   252 IVKQREDRANESDKIIKQKGKELEEAQKKIDAANLAVKKLEDDVSSRIKDLALREQETDV 311

Query:   206 LQSLIEDYAEELES-KEKLYDEIKKSIIQC----ETKLDCKKKELELTQTSIIXXXXXXX 260
             L+  IE  A EL++ +EKL    K ++ Q     + KLD  ++E EL             
Sbjct:   312 LKKSIETKARELQALQEKLEAREKMAVQQLVDEHQAKLDSTQREFELEMEQKRKSIDDSL 371

Query:   261 XXXXXXXXXQRIV-RLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRS 319
                      +    +  E ++  +E+ LD   E+ K+  ND +L+ +  +G  K ++   
Sbjct:   372 KSKVAEVEKREAEWKHMEEKVAKREQALDRKLEKHKEKENDFDLRLKGISGREKALKSEE 431

Query:   320 QELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAA 379
             + L  ++K+L   +E +   +   E+   E  +    I+K  +EL + ++          
Sbjct:   432 KALETEKKKLLEDKEIILNLKALVEKVSGENQAQLSEINKEKDELRVTEEERSEYLRLQT 491

Query:   380 ELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDER 423
             EL ++ E    + +L+Q  A    + LK + + F    E LDER
Sbjct:   492 ELKEQIEKCRSQQELLQKEA----EDLKAQRESFEKEWEELDER 531

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006997 "nucleus organization" evidence=IGI;IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005652 "nuclear lamina" evidence=IDA

GO:0034399 "nuclear periphery" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1046
pfam07899	293	pfam07899, Frigida, Frigida-like protein	6e-45
pfam07899	293	pfam07899, Frigida, Frigida-like protein	1e-38
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-17
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-16
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-15
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-15
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	4e-15
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-15
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-14
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	1e-13
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-13
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-12
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-12
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-12
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	4e-12
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-12
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-12
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-12
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	6e-12
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	7e-12
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	2e-11
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-11
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-11
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-11
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-11
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-10
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	6e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-10
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-09
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-08
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	6e-08
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	1e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-07
TIGR00606	1311	TIGR00606, rad50, rad50	4e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	6e-07
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	6e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-07
pfam10174	774	pfam10174, Cast, RIM-binding protein of the cytoma	1e-06
TIGR00606	1311	TIGR00606, rad50, rad50	2e-06
PRK01156	895	PRK01156, PRK01156, chromosome segregation protein	3e-06
pfam13166	713	pfam13166, AAA_13, AAA domain	4e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-06
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	1e-05
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	2e-05
pfam10174	774	pfam10174, Cast, RIM-binding protein of the cytoma	2e-05
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	3e-05
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	3e-05
PRK01156	895	PRK01156, PRK01156, chromosome segregation protein	3e-05
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	4e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	6e-05
pfam05557	722	pfam05557, MAD, Mitotic checkpoint protein	7e-05
TIGR00618	1042	TIGR00618, sbcc, exonuclease SbcC	1e-04
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	1e-04
TIGR00606	1311	TIGR00606, rad50, rad50	2e-04
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	2e-04
pfam05557	722	pfam05557, MAD, Mitotic checkpoint protein	3e-04
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	3e-04
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	4e-04
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	5e-04
pfam05557	722	pfam05557, MAD, Mitotic checkpoint protein	5e-04
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	5e-04
pfam13166	713	pfam13166, AAA_13, AAA domain	6e-04
TIGR00606	1311	TIGR00606, rad50, rad50	8e-04
COG0610	962	COG0610, COG0610, Type I site-specific restriction	8e-04
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	0.001
COG0466	782	COG0466, Lon, ATP-dependent Lon protease, bacteria	0.003
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.004
COG0610	962	COG0610, COG0610, Type I site-specific restriction	0.004
COG5022	1463	COG5022, COG5022, Myosin heavy chain [Cytoskeleton	0.004

>gnl|CDD|219629 pfam07899, Frigida, Frigida-like protein

 Score =  164 bits (416), Expect = 6e-45
 Identities = 96/252 (38%), Positives = 138/252 (54%), Gaps = 27/252 (10%)

Query: 683 NEVLQLLHLAPDPAMFVLD-----FIQHWKSQGTGFEEDNVKCCILVLEKLKEVLPIMNP 737
            EV   L  APDPA  VLD     +    K        D  + C+L+LE+L  V P ++P
Sbjct: 43  EEVPAALRCAPDPAKLVLDAIEGFYPPDSKGGKEDKMVDVRRSCVLLLEQLVRVNPPISP 102

Query: 738 RVKGEAMKLAVEWKTKM----GVGTLNSLEVLVFLQLLGTFELVASFNRVEIVELLWTIS 793
            VK EA KLAVEWK K+    GV    SLE L FLQLL  F LV+ F++ E+++L   +S
Sbjct: 103 DVKEEAKKLAVEWKAKLEEDGGVENGKSLEALGFLQLLAAFGLVSEFDQDELLKLFVMVS 162

Query: 794 EHKQAPETCRALGFTDIVA--------------TIRFICAFKLTDIAKPEAIFKQYLDD- 838
             KQAPE CR+LG  D +                +RFI  F L D   P ++ K YL+D 
Sbjct: 163 RRKQAPELCRSLGLADKMPDLIEELIKRGRQIDAVRFIYEFGLVDKFPPVSLLKAYLEDA 222

Query: 839 --NISDIHRKGNNSSDAKVKAMDFEVNALTFLIECFKENKLESSLLIENIKQRIVQLEMA 896
             +   +  + N+S  A+ +A+D E+ AL  +I+C +++KLES   +E +++RI +LE A
Sbjct: 223 KKSAKKV-CRENSSLRAQSEAIDKELAALRAVIKCIEDHKLESEYPLEPLEERIEELEKA 281

Query: 897 KADCRRHSTPAP 908
           KAD ++ +  A 
Sbjct: 282 KADKKKATEVAS 293

This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana. This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time. Length = 293

>gnl|CDD|219629 pfam07899, Frigida, Frigida-like protein

 Score =  145 bits (369), Expect = 1e-38
 Identities = 71/162 (43%), Positives = 99/162 (61%), Gaps = 5/162 (3%)

Query: 499 CTMITGKNLQLLLNQHLQKHDLVFGEISHTLTKACDPASLVLDAMEGFYPPHSREGDMEF 558
           C  +  + L   + ++ ++   +  E+   L  A DPA LVLDA+EGFYPP S+ G  E 
Sbjct: 19  CEKMDSRGLLKFVIENRKELASLREEVPAALRCAPDPAKLVLDAIEGFYPPDSKGGK-ED 77

Query: 559 DVSIIRRTCILLLEQLSSVTPEINPQVRDEAMKVAGEWKKKM----RVAEDNSLEVLGFL 614
            +  +RR+C+LLLEQL  V P I+P V++EA K+A EWK K+     V    SLE LGFL
Sbjct: 78  KMVDVRRSCVLLLEQLVRVNPPISPDVKEEAKKLAVEWKAKLEEDGGVENGKSLEALGFL 137

Query: 615 HLLAAYGLGPSFDGIELESLLDIVAQHRQTSKLRQSLGFAEK 656
            LLAA+GL   FD  EL  L  +V++ +Q  +L +SLG A+K
Sbjct: 138 QLLAAFGLVSEFDQDELLKLFVMVSRRKQAPELCRSLGLADK 179

This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana. This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time. Length = 293

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 85.9 bits (213), Expect = 7e-17
 Identities = 78/318 (24%), Positives = 154/318 (48%), Gaps = 14/318 (4%)

Query: 161 QRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIED-----YAE 215
           +R+LE   ++  E++E   ++L K    +E  + E   + +    L++ + +        
Sbjct: 178 ERKLERTEEN-LERLEDLLEELEKQLEKLER-QAEKAERYQ---ELKAELRELELALLLA 232

Query: 216 ELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRL 275
           +L+   K  +E+++ + + E +L+  ++ELE  +  I EL  EL    E+LE LQ  +  
Sbjct: 233 KLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLE 292

Query: 276 RENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQES 335
            + E++  E ++  ++E +++  N++E  E     +++ IE   +EL  +E  L+ +++ 
Sbjct: 293 LKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQL 352

Query: 336 LEGCRNEFEEKENELI----SVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELE 391
           L       EE E +L      +E+L +   EEL   +  L  I N   EL  E ES E  
Sbjct: 353 LAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEER 412

Query: 392 LDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESI 451
           L+ +        ++LKE E +   L+  L+E  ++LE  E + EE     +  E+E+  +
Sbjct: 413 LERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAEL 472

Query: 452 RKAVEDRSKNLELKEKKL 469
           ++ ++   K L   E +L
Sbjct: 473 QEELQRLEKELSSLEARL 490

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 84.4 bits (209), Expect = 2e-16
 Identities = 79/333 (23%), Positives = 160/333 (48%), Gaps = 15/333 (4%)

Query: 75  KEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEG----ELNLVK 130
           +  E  E  L   E  ++     L   EKQLE + ++  + E   +LK      EL L+ 
Sbjct: 172 ERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLL 231

Query: 131 KSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIE 190
             ++E  ++L+   +E+  +E+  ++   +    E       ++IE  + +L ++R  +E
Sbjct: 232 AKLKELRKELEELEEELSRLEEELEELQEELEEAE-------KEIEELKSELEELREELE 284

Query: 191 ECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQT 250
           E ++EL+  ++    L+  I    E LE  E   +E+++ + + + K++  K+ELE  +T
Sbjct: 285 ELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERET 344

Query: 251 SIIELSLELHLEEEKLESLQRIVRLRENELDSK----EEKLDAMKEEMKKYFNDIELKER 306
            + EL   L   EE  E L+  +     EL+       E+L  ++ E+ +  N++E  +R
Sbjct: 345 LLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKR 404

Query: 307 EFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELEL 366
           E   + + +E+ S+ L   +++LK ++  LE  + E EE   EL  +E+ +++  + L+ 
Sbjct: 405 EIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKE 464

Query: 367 KKKHLCVIENSAAELSDECESNELELDLIQTMA 399
            ++ L  ++     L  E  S E  LD ++   
Sbjct: 465 LERELAELQEELQRLEKELSSLEARLDRLEAEQ 497

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 80.9 bits (200), Expect = 2e-15
 Identities = 82/356 (23%), Positives = 166/356 (46%), Gaps = 21/356 (5%)

Query: 121 LKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKE- 179
            +E E  L  +  EE LE+L+  ++E+    +   + L  Q       ++   ++   E 
Sbjct: 174 KEEAERKL--ERTEENLERLEDLLEEL----EKQLEKLERQAEKAERYQELKAELRELEL 227

Query: 180 ----KDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCE 235
                 L+++R  +EE E+EL   E+    LQ  +E+  +E+E  +   +E+++ + + +
Sbjct: 228 ALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQ 287

Query: 236 TKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMK 295
            +L   K+E+E       EL  E+ L  E+LE L+  +   E  L+  +EK++A+KEE++
Sbjct: 288 EELLELKEEIE-------ELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELE 340

Query: 296 KYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEK 355
           +    +E  E+    + +  E+  ++L      L+ ++E  E  R E  E E EL  +  
Sbjct: 341 ERETLLEELEQLLAELEEAKEELEEKL---SALLEELEELFEALREELAELEAELAEIRN 397

Query: 356 LIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHS 415
            +++   E+E  ++ L  +     +L +E +  E EL+ +QT      ++L+E E+Q   
Sbjct: 398 ELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEE 457

Query: 416 LKEALDERWQDLEIKERKFEERVKEFELREKEIESIRKAVEDRSKNLELKEKKLSN 471
           L++ L E  ++L   + + +   KE    E  ++ +            + E   S 
Sbjct: 458 LRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESG 513

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 80.1 bits (198), Expect = 4e-15
 Identities = 77/303 (25%), Positives = 157/303 (51%), Gaps = 12/303 (3%)

Query: 174 QIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQ 233
           +++  E++L ++ + +E+ E+EL   +    SL+ L+E+   +LE  E+  +E+K+ +  
Sbjct: 668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAA 727

Query: 234 CETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEE 293
            E +L+  +  LE  +  + EL  EL   +E+LE L+  +   E  L   +E+++ ++E+
Sbjct: 728 LEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEK 787

Query: 294 MKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISV 353
            +    ++E  E E     + ++   +EL   E++ + +++ +E    E EE E +L  +
Sbjct: 788 RQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDEL 847

Query: 354 EKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQF 413
           E+ +++  +ELE  K+ L  +E    EL DE +  E E + ++       ++L+E E + 
Sbjct: 848 EEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELE-------EELRELESEL 900

Query: 414 HSLKEA---LDERWQDLEIKERKFEERVK--EFELREKEIESIRKAVEDRSKNLELKEKK 468
             LKE    L ER ++LE K  + E  +   E EL E+  +++   +E   + LE + + 
Sbjct: 901 AELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEA 960

Query: 469 LSN 471
           L  
Sbjct: 961 LGP 963

Length = 1163

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 80.1 bits (198), Expect = 4e-15
 Identities = 109/460 (23%), Positives = 206/460 (44%), Gaps = 49/460 (10%)

Query: 56  LEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGEC 115
            E    +    I+ + +R + +E         E  IKE       KEK+LE V + I E 
Sbjct: 160 YENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKE-------KEKELEEVLREINEI 212

Query: 116 ECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQI 175
             EL     EL  ++K V+E LE+L  +++E+    +S + S    R+LE  I++  E+I
Sbjct: 213 SSELPELREELEKLEKEVKE-LEELKEEIEELEKELESLEGSK---RKLEEKIRELEERI 268

Query: 176 ELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKL---YDEIKKSII 232
           E  +K++ ++   ++E  KEL  K +    L    E+Y +EL   EK     +E    I 
Sbjct: 269 EELKKEIEELEEKVKEL-KELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIE 327

Query: 233 QCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLREN--ELDSKE-----E 285
           +   +L+ K++ LE  +  + EL   L   EE+ E  +     +E    L  +      E
Sbjct: 328 ERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPE 387

Query: 286 KLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEE 345
           KL+   EE++K   +IE +  +       ++K  +EL    ++LK  +     C  E  E
Sbjct: 388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTE 447

Query: 346 KEN---------ELISVEKLIDKCSEELELKKKHLCVIENSAA---------ELSDECES 387
           +           EL  +EK + +  E+    +K L  +E             EL+++ + 
Sbjct: 448 EHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKE 507

Query: 388 NELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKE 447
            E +L          L++L++K +++  LKE L +   +++  +++  E+++E + +  E
Sbjct: 508 LEEKLKKYN------LEELEKKAEEYEKLKEKLIKLKGEIKSLKKEL-EKLEELKKKLAE 560

Query: 448 IESIRKAVEDRSKNL--ELKEKKLSNNLHLQVKIEQPESL 485
           +E     +E+    L  EL+E    +   L+ ++++ E  
Sbjct: 561 LEKKLDELEEELAELLKELEELGFESVEELEERLKELEPF 600

Length = 880

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 79.0 bits (195), Expect = 9e-15
 Identities = 76/343 (22%), Positives = 157/343 (45%), Gaps = 8/343 (2%)

Query: 28  AHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLA 87
                 S L    + K+LEE L      LEK   +  S    L      +E     L   
Sbjct: 655 GSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEEL 714

Query: 88  ERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEV 147
           ER+++E   ELA  E++LE ++ R+ E E EL+  E EL  +++ +EE  E+L+   + +
Sbjct: 715 ERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEAL 774

Query: 148 GLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQ 207
             +++  ++    ++ L+  +++  E++E  E+ L  +   +E  E+     E+    L+
Sbjct: 775 AKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELE 834

Query: 208 SLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLE 267
             IE+  E+L+  E+  +E++K + + + +L+  + E E  +  + EL  E    EE+L 
Sbjct: 835 EEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELR 894

Query: 268 SLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKC-----IEKRSQEL 322
            L+  +   + E++   E+L+ ++ ++++   ++   E E     +      +E+  + L
Sbjct: 895 ELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERL 954

Query: 323 TLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELE 365
             + + L  V         E+EE E     ++   +   E  E
Sbjct: 955 EEEIEALGPVNLRAI---EEYEEVEERYEELKSQREDLEEAKE 994

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 77.1 bits (190), Expect = 3e-14
 Identities = 109/488 (22%), Positives = 205/488 (42%), Gaps = 61/488 (12%)

Query: 8   KEELRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKI 67
           KE ++ A++K E L             +L      ++L+E   +     E++  + + +I
Sbjct: 177 KEVIKEAKAKIEELEGQLSELLEDIEDLLEA--LEEELKELKKLEEIQEEQEEEELEQEI 234

Query: 68  RLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELN 127
             L++R  E+E ++  L   + R+ E         K  E   + +     EL+ K   L 
Sbjct: 235 EALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLE 294

Query: 128 LVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRS 187
            +++ +EE  E+L+                L +   L   +K   E++E  E+ L K+ S
Sbjct: 295 ELEREIEELEEELEGLRAL-----------LEELEELLEKLKSLEERLEKLEEKLEKLES 343

Query: 188 SIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELEL 247
            +EE  +E     K       L+E+  +ELE + +  ++  +  ++   +L         
Sbjct: 344 ELEELAEEKNELAK-------LLEERLKELEERLEELEKELEKALERLKQL--------- 387

Query: 248 TQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKERE 307
            + +I EL  EL      LE +Q  +   E EL+  E +L+ ++EE+KK    I   E +
Sbjct: 388 -EEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESK 446

Query: 308 FNGI----------------------RKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEE 345
              I                      ++ +E    EL   E++L   +E     R E EE
Sbjct: 447 ELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELEEELSREKE-EAELREEIEE 505

Query: 346 KENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQ 405
            E EL  +E+ + +  E  E  K+ L         L +E E  + +L L Q      L+Q
Sbjct: 506 LEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQ--LKEELRQ 563

Query: 406 LKEKEKQFHSLKEAL-DERWQDLEIKE-----RKFEERVKEFELREKEIESIRKAVEDRS 459
           L+++ ++   L E L   R +  E++E     ++ ++++KE E R  ++E + +++E   
Sbjct: 564 LEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSE 623

Query: 460 KNLELKEK 467
              EL+E 
Sbjct: 624 AENELEEA 631

Length = 908

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 75.6 bits (186), Expect = 1e-13
 Identities = 106/472 (22%), Positives = 221/472 (46%), Gaps = 48/472 (10%)

Query: 42  WKDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACK 101
            ++ +E L+     L +  +     +++ ++  +E+E    +L     R++E   E+   
Sbjct: 244 LEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEEL 303

Query: 102 EKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQ 161
           E++LE +R  + E E  L+  +     ++K  E+ LEKL+ +++E  L E+ N+ + + +
Sbjct: 304 EEELEGLRALLEELEELLEKLKSLEERLEKLEEK-LEKLESELEE--LAEEKNELAKLLE 360

Query: 162 RR---LENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELE 218
            R   LE  +++  +++E   + L+++  +I+E ++EL       + L + +E+  EELE
Sbjct: 361 ERLKELEERLEELEKELEKALERLKQLEEAIQELKEEL-------AELSAALEEIQEELE 413

Query: 219 SKEKLYDEIKKSIIQCET---KLDCKKKELELTQTSIIELSLELHLE-----EEKLESLQ 270
             EK  +E+++ + + E    KL+ +  +LE  +  I EL+           E   E  +
Sbjct: 414 ELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEK 473

Query: 271 RIVRLRENELDSKEEKLDA------MKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTL 324
            ++ L E EL+  EE+L        ++EE+++   ++   E E   + +  E   +EL  
Sbjct: 474 ELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEE 533

Query: 325 KEKQL------------KCVQESLEGCRNEFEEKENELISVEK---LIDKCSEELELKKK 369
           K ++L            K   + L+    + E++  EL  + +   L+    EELE  ++
Sbjct: 534 KLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRE 593

Query: 370 HLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEI 429
            L  ++    EL +    ++LE  L          +L+E E++  S  E L+ +      
Sbjct: 594 RLKELKKKLKELEER--LSQLEELLQSLELSEAENELEEAEEELESELEKLNLQ----AE 647

Query: 430 KERKFEERVKEFELREKEIESIRKAVEDRSKNLELKEKKLSNNLHLQVKIEQ 481
            E   +  ++E E + +E+E+  +    R +N E  E+KL     L+ ++EQ
Sbjct: 648 LEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQ 699

Length = 908

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 73.6 bits (181), Expect = 5e-13
 Identities = 82/361 (22%), Positives = 167/361 (46%), Gaps = 46/361 (12%)

Query: 11  LRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKIRL- 69
            +  E +KE  R+   L   + N       + +D+   L+  +KSLE+Q+  A+    L 
Sbjct: 168 SKYKERRKETERK---LERTREN-----LDRLEDILNELERQLKSLERQAEKAERYKELK 219

Query: 70  --------------LDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGEC 115
                         L++  +E+E  + +L  AE  ++E   EL   E++LE +R  + E 
Sbjct: 220 AELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSEL 279

Query: 116 ECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQI 175
           E E++  + EL  +   +   LE    + K++             + RL NL +    Q+
Sbjct: 280 EEEIEELQKELYALANEISR-LE----QQKQIL------------RERLANLER----QL 318

Query: 176 ELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCE 235
           E  E  L ++ S ++E  +EL   E+    L+  +E    ELE  E   +E++  + + E
Sbjct: 319 EELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELE 378

Query: 236 TKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMK 295
            +L+  + ++   +  I  L+ E+   E +LE L+      + E++   +KL+  + E+K
Sbjct: 379 EQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLE--EAELK 436

Query: 296 KYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEK 355
           +   ++E  E E   +++ +E+  + L    ++L+  +++L+    E  + +  L S+E+
Sbjct: 437 ELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLER 496

Query: 356 L 356
           L
Sbjct: 497 L 497

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 72.0 bits (177), Expect = 1e-12
 Identities = 84/371 (22%), Positives = 153/371 (41%), Gaps = 31/371 (8%)

Query: 104 QLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMK--EVGLVEKSNDKSLVDQ 161
           +LE V + I   +  +  K  +L  +++  E+      L  +  E    E   +K     
Sbjct: 178 ELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEK----- 232

Query: 162 RRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEE--LES 219
             LE   +    Q+   E++L K+   I E EK L   E+    L   I+D  EE  L  
Sbjct: 233 EALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRV 292

Query: 220 KEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENE 279
           KEK+  E++  I   E  +  K++ELE  +  + +L  E+     ++E L+R +      
Sbjct: 293 KEKI-GELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKR 351

Query: 280 LDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGC 339
            D   E+   +KEE++    ++E  ++EF   R               +LK  +E LE  
Sbjct: 352 RDKLTEEYAELKEELEDLRAELEEVDKEFAETRD--------------ELKDYREKLEKL 397

Query: 340 RNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMA 399
           + E  E + EL  +++ + + SEEL      +  IE    EL +E E   LE+   +   
Sbjct: 398 KREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKL 457

Query: 400 IGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIRKAVEDRS 459
                 L + E++ + LKE       + +  E++  +  +E    E +  +  + V    
Sbjct: 458 EQLAADLSKYEQELYDLKE-------EYDRVEKELSKLQRELAEAEAQARASEERVRGGR 510

Query: 460 KNLELKEKKLS 470
              E+ +  + 
Sbjct: 511 AVEEVLKASIQ 521

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 70.5 bits (173), Expect = 3e-12
 Identities = 72/348 (20%), Positives = 146/348 (41%), Gaps = 22/348 (6%)

Query: 88   ERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEV 147
             R I+E   ++   E+++  + K + E   EL+  E EL  ++K +EE   ++    K++
Sbjct: 676  RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDL 735

Query: 148  GLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQ 207
              +E   ++      +L   + +   +IE  E+ L +    + E E E+   E     L+
Sbjct: 736  ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK 795

Query: 208  SLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLE 267
              ++   E L+        + +       +L+  ++ +  T+  + +L  ++    E +E
Sbjct: 796  EELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIE 855

Query: 268  SLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEK 327
            SL         E++  EE ++ ++ E++   N+    E     +R  +E+ S+EL   E 
Sbjct: 856  SLAA-------EIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELES 908

Query: 328  QLKCVQESLEGCRNEFEEKENELISVE----KLIDKCSEE----LELKKKHLCVIENSAA 379
            +   ++  LE  R +  + E  L  +E     L ++ SEE    LE  +     IE+   
Sbjct: 909  KRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEE 968

Query: 380  ELSDECESNELELDLIQT---MAIGYLKQLKEK----EKQFHSLKEAL 420
            E     +  E ++  +      AI   ++LKE+      Q   L EA 
Sbjct: 969  EARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAK 1016

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 70.9 bits (174), Expect = 3e-12
 Identities = 67/376 (17%), Positives = 174/376 (46%), Gaps = 43/376 (11%)

Query: 104  QLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRR 163
            +L+ +R+R+   + EL   + EL  ++  ++E  ++L    +++G +EK  ++   ++ +
Sbjct: 675  ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEK 734

Query: 164  LENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIED-YAEELESK-- 220
            L+  +++  E +   E+++  ++S ++E E  +   E+    L+  + D  A    S+  
Sbjct: 735  LKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIP 794

Query: 221  --EKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLREN 278
              +    ++++ + + E +L   +++L         L+LE    E++++ LQ      + 
Sbjct: 795  EIQAELSKLEEEVSRIEARLREIEQKLN-------RLTLEKEYLEKEIQELQEQRIDLKE 847

Query: 279  ELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEG 338
            ++ S E++++ +  +                      E+  +EL   E  L+ ++  L  
Sbjct: 848  QIKSIEKEIENLNGK---------------------KEELEEELEELEAALRDLESRLGD 886

Query: 339  CRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQ-- 396
             + E +E E +L  +E+ I++   ++E K+K L  ++     L +E    E      +  
Sbjct: 887  LKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEI 946

Query: 397  ---TMAIGYLK-QLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIR 452
                +++  ++ +L+  E++  +L+       Q+ E   ++ +E  ++    E+E    R
Sbjct: 947  PEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEE----R 1002

Query: 453  KAVEDRSKNLELKEKK 468
            KA+ +R +  E K+++
Sbjct: 1003 KAILERIEEYEKKKRE 1018

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 70.1 bits (172), Expect = 4e-12
 Identities = 109/454 (24%), Positives = 207/454 (45%), Gaps = 32/454 (7%)

Query: 43  KDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKE 102
           K+  E L+  ++SLE      + KIR L++R +E++ +  +L    + +KE   E A + 
Sbjct: 237 KEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELK-EKAEEY 295

Query: 103 KQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQR 162
            +L    +   +   E++ +   L      +EE +++L+ K + +  ++K   +      
Sbjct: 296 IKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLE 355

Query: 163 RLENLIKDFCEQIELKEKDLRKIRS-----SIEECEKELVMKEKHASSLQSLIEDYAEEL 217
            LE   + + E+ + K+++L +++      + E+ EKEL   EK    ++  I      +
Sbjct: 356 ELEERHELY-EEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARI 414

Query: 218 ESKEKLYDEIKKSIIQCE-TKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLR 276
              +K   E+KK+I + +  K  C     ELT+    EL  E   E +++E         
Sbjct: 415 GELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEK-------E 467

Query: 277 ENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESL 336
             E++ KE KL     E++K       KE E   +++  E   Q   L+EK  K   E L
Sbjct: 468 LKEIEEKERKLRKELRELEKVLK----KESELIKLKELAE---QLKELEEKLKKYNLEEL 520

Query: 337 EGCRNEFEEKENELISVEKLIDKCSEELELK---KKHLCVIENSAAELSDECESNELELD 393
           E    E+E+ + +LI ++  I    +ELE     KK L  +E    EL +E      EL+
Sbjct: 521 EKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELE 580

Query: 394 LIQTMAI----GYLKQLKEKEKQFHSLKEA---LDERWQDLEIKERKFEERVKEFELREK 446
            +   ++      LK+L+    ++  LK+A   L+   ++L+  E + ++  +E    EK
Sbjct: 581 ELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEK 640

Query: 447 EIESIRKAVEDRSKNLELKEKKLSNNLHLQVKIE 480
            +E +RK +E+  K    +E +     +L++  E
Sbjct: 641 RLEELRKELEELEKKYSEEEYEELREEYLELSRE 674

Length = 880

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 70.5 bits (173), Expect = 4e-12
 Identities = 56/268 (20%), Positives = 123/268 (45%), Gaps = 3/268 (1%)

Query: 156 KSLVDQR-RLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYA 214
           + L ++   L+  +K+  E++E    +L+++   +EE   E+   E+    LQ  +   A
Sbjct: 235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALA 294

Query: 215 EELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVR 274
            E+   E+    +++ +   E +L+  + +LE  ++ + EL+ EL   EEKLE L+  + 
Sbjct: 295 NEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELE 354

Query: 275 LRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQE 334
             E EL+  E +L+ ++  +++    +E    +   +   I   + E+   E +L+ +++
Sbjct: 355 SLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLED 414

Query: 335 SLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDL 394
             E  + E EE   +L   E    +   ELE  ++ L  ++     L +  E    EL+ 
Sbjct: 415 RRERLQQEIEELLKKLEEAEL--KELQAELEELEEELEELQEELERLEEALEELREELEE 472

Query: 395 IQTMAIGYLKQLKEKEKQFHSLKEALDE 422
            +       ++L + + +  SL+   + 
Sbjct: 473 AEQALDAAERELAQLQARLDSLERLQEN 500

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 70.1 bits (172), Expect = 5e-12
 Identities = 56/277 (20%), Positives = 124/277 (44%), Gaps = 7/277 (2%)

Query: 214 AEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIV 273
            E LE  ++    ++  + + E +LD   +EL      I E+  E+   E++ E L+  +
Sbjct: 680 RERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERL 739

Query: 274 RLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQ 333
              E +L S E++++ +K E+K+    IE  E + + + + +      L+    ++  +Q
Sbjct: 740 EELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLS--HSRIPEIQ 797

Query: 334 ESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELD 393
             L     E    E  L  +E+ +++ + E E  +K +  ++    +L ++ +S E E++
Sbjct: 798 AELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIE 857

Query: 394 LIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIRK 453
            +        ++L+E E         L+ R  DL+ +  + E +++E E + +E+E+  +
Sbjct: 858 NLNGKKEELEEELEELEAAL----RDLESRLGDLKKERDELEAQLRELERKIEELEAQIE 913

Query: 454 AVEDRSKNLELK-EKKLSNNLHLQVKIEQPESLKGNE 489
               R   L+ K E        ++    + E +   E
Sbjct: 914 KKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEE 950

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 70.1 bits (172), Expect = 5e-12
 Identities = 74/361 (20%), Positives = 156/361 (43%), Gaps = 34/361 (9%)

Query: 112 IGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDF 171
           + E + + +    EL  V++++E     +D K +++  + +  +K+   Q  L+   +  
Sbjct: 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKRE-- 222

Query: 172 CEQIELKE--KDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKK 229
               E  E  K+   +    E  E++L   E+    L   I +  + LE  E+L +E+ K
Sbjct: 223 ---YEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNK 279

Query: 230 SIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDA 289
            I              +L +   + +  ++   E ++ SL+R +  +E EL+  EE+L  
Sbjct: 280 KI-------------KDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAK 326

Query: 290 MKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENE 349
           ++ E+ K   +IE  ERE    RK  +K ++E    +++L+ ++  LE    EF E  +E
Sbjct: 327 LEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDE 386

Query: 350 LISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEK 409
           L    + ++K   E+   K+ L  ++     LS+E       +             ++ K
Sbjct: 387 LKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAI-----------AGIEAK 435

Query: 410 EKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIRKAVEDRSKNLELKEKKL 469
             +    KE        ++ +E K E+   +    E+E+  +++  +   K L   +++L
Sbjct: 436 INELEEEKEDKALE---IKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQREL 492

Query: 470 S 470
           +
Sbjct: 493 A 493

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 69.7 bits (171), Expect = 6e-12
 Identities = 109/466 (23%), Positives = 209/466 (44%), Gaps = 53/466 (11%)

Query: 46  EEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQL 105
            E+++  +K  EK+  +   +I  +     E+  +   L    + ++E   E+   EK+L
Sbjct: 188 TENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKEL 247

Query: 106 ELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLE 165
           E +     + E +++  E  +  +KK +EE    L+ K+KE+  +++  ++      +L 
Sbjct: 248 ESLEGSKRKLEEKIRELEERIEELKKEIEE----LEEKVKELKELKEKAEE----YIKLS 299

Query: 166 NLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSL------IEDYAEELES 219
              +++ +++   EK L ++   I   E+ +   E+    L+ L      +E   EELE 
Sbjct: 300 EFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEE 359

Query: 220 KEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENE 279
           + +LY+E K    + E     KK+   LT   + +   EL   +E++E     +  R  E
Sbjct: 360 RHELYEEAKAKKEELE---RLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGE 416

Query: 280 LDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRK--CIEKRSQELTLKEKQLKCVQESLE 337
           L  + ++L    EE+KK      +  RE     +   +E+ + EL   EK+LK ++E   
Sbjct: 417 LKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKER 476

Query: 338 GCRNEFEE------KENELISVEKLIDKCS-----------EELELKKKHLCVIENSAAE 380
             R E  E      KE+ELI +++L ++             EELE K +    ++    +
Sbjct: 477 KLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIK 536

Query: 381 LSDECESNELELDLIQTM---AIGYLKQLKEKEKQFHSLK-----------EALDERWQD 426
           L  E +S + EL+ ++ +        K+L E E++   L            E L+ER ++
Sbjct: 537 LKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKE 596

Query: 427 LEIKERKFEE---RVKEFELREKEIESIRKAVEDRSKNLELKEKKL 469
           LE    ++ E     KE E  EKE++ + + ++   + L   EK+L
Sbjct: 597 LEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRL 642

Length = 880

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 69.3 bits (170), Expect = 7e-12
 Identities = 69/276 (25%), Positives = 142/276 (51%), Gaps = 5/276 (1%)

Query: 213 YAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRI 272
               LE   +  +E+++ + + E +L+    EL+  +  + EL LE+   EE++E LQ+ 
Sbjct: 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKE 289

Query: 273 VRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCV 332
           +    NE+   E++   ++E +      +E  E +   +   +++ ++EL   E++L+ +
Sbjct: 290 LYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEEL 349

Query: 333 QESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELEL 392
           +E LE    E EE E EL  +E  +++  E+LE  +  +  +E   A L++E E  E  L
Sbjct: 350 KEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARL 409

Query: 393 DLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIR 452
           + ++       ++++E  K+    +  L E   +LE  E + EE  +E E  E+ +E +R
Sbjct: 410 ERLEDRRERLQQEIEELLKKLEEAE--LKELQAELEELEEELEELQEELERLEEALEELR 467

Query: 453 KAVEDRSKNLELKEKKLSNNLHLQVKIEQPESLKGN 488
           + +E+  + L+  E++L+    LQ +++  E L+ N
Sbjct: 468 EELEEAEQALDAAERELA---QLQARLDSLERLQEN 500

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 67.8 bits (166), Expect = 2e-11
 Identities = 108/466 (23%), Positives = 203/466 (43%), Gaps = 88/466 (18%)

Query: 56  LEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELA-------------CKE 102
           +EK+ +  + +I  +++R KE+E KE  L   ++++KE    L               K+
Sbjct: 312 IEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKK 371

Query: 103 KQLELVRKRIGECECE-LQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSL--- 158
           ++LE ++KR+     E L+ +  EL   K+ +EE + K+  ++ E+    K   K++   
Sbjct: 372 EELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEEL 431

Query: 159 -------------VDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASS 205
                        + +   + L++++  +++  EK+L++I     +  KEL   EK    
Sbjct: 432 KKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKK 491

Query: 206 LQSLIEDY-----------------AEELESKEKLYDEIKKSIIQCETKLDCKKKELELT 248
              LI+                    EELE K + Y+++K+ +I+ + ++   KKEL   
Sbjct: 492 ESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKEL--- 548

Query: 249 QTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKY-FNDIELKERE 307
                          EKLE L++ +   E +LD  EE+L  + +E+++  F  +E  E  
Sbjct: 549 ---------------EKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEER 593

Query: 308 FNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELK 367
              +         EL   EK+L+  ++ L+    E ++   EL   EK +++  +ELE  
Sbjct: 594 LKELEP-FYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEEL 652

Query: 368 KKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDL 427
           +K     E    EL +E                   ++L     +   L++  +E  + L
Sbjct: 653 EKKYS--EEEYEELREEYLELS--------------RELAGLRAELEELEKRREEIKKTL 696

Query: 428 EIKERKFEERVKEFELREKEIESIRKAVEDRSKNLELKEKKLSNNL 473
           E    K +E ++E E  +KE+E + KA+E R + L  K KK    L
Sbjct: 697 E----KLKEELEEREKAKKELEKLEKALE-RVEELREKVKKYKALL 737

Length = 880

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 67.8 bits (166), Expect = 2e-11
 Identities = 70/344 (20%), Positives = 139/344 (40%), Gaps = 27/344 (7%)

Query: 68  RLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELN 127
           RL  +R K    +       E    E   E    E+Q E + +++   E EL+    E++
Sbjct: 202 RLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEIS 261

Query: 128 LVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRS 187
            ++K +EE  + L+       L +K  D    +Q R++       E+I   E ++  +  
Sbjct: 262 ELEKRLEEIEQLLE------ELNKKIKDLGEEEQLRVK-------EKIGELEAEIASLER 308

Query: 188 SIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELEL 247
           SI E E+EL              ED  E L   E   D++   I + E +++ ++K  + 
Sbjct: 309 SIAEKEREL--------------EDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDK 354

Query: 248 TQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKERE 307
                 EL  EL     +LE + +      +EL    EKL+ +K E+ +   +++  + E
Sbjct: 355 LTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEE 414

Query: 308 FNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELK 367
              + + +   +  +   E ++  ++E  E    E +++E +L  +   + K  +EL   
Sbjct: 415 LQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDL 474

Query: 368 KKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEK 411
           K+    +E   ++L  E    E +    +    G     +  + 
Sbjct: 475 KEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKA 518

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 67.1 bits (164), Expect = 3e-11
 Identities = 105/501 (20%), Positives = 223/501 (44%), Gaps = 42/501 (8%)

Query: 8   KEELRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKI 67
           +EELR  E   E L    +        +     + + L   L+  ++ L ++    + ++
Sbjct: 273 EEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLE-ELEELLEKLKSLEERL 331

Query: 68  RLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELN 127
             L+++ +++ES+  +L   +  +          E++L+ + +R+ E E EL+     L 
Sbjct: 332 EKLEEKLEKLESELEELAEEKNELA------KLLEERLKELEERLEELEKELEKALERLK 385

Query: 128 LVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRS 187
            ++++++E  E+L      +  +++  ++   +   LE  +++  E+I+  E+ + ++ S
Sbjct: 386 QLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLES 445

Query: 188 SIEE-------------CEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQC 234
                            C +EL   E+H   L  L E   EELE +    ++ +  + + 
Sbjct: 446 KELMIAELAGAGEKCPVCGQEL--PEEHEKELLELYELELEELEEELSR-EKEEAELREE 502

Query: 235 ETKLDCKKKELELTQTSIIELSLELHLE-EEKLESL-QRIVRLRENELDSKEEKLDAMKE 292
             +L+ + +ELE     ++EL   L  E EEKLE L   +  L E +   + ++L     
Sbjct: 503 IEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELR 562

Query: 293 EMKKYFNDIELKEREFNGIRKC---IEKRSQELTLKEKQLKCVQESLEGCRNEFE----- 344
           +++    +++    E   +R     +E+  + L   +K+LK ++E L       +     
Sbjct: 563 QLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELS 622

Query: 345 EKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECE------SNELELDLIQTM 398
           E ENEL   E+ ++   E+L L+ +   +++ +  EL ++ E        EL+    +  
Sbjct: 623 EAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQ 682

Query: 399 AIGYLKQLKEKEKQFHSLKEALDERWQDLEIKER---KFEERVKEFELREKEIESIRKAV 455
               L++L++ E++   L+E L+E  + L   E+   + E R  E E  +KE+E + KA+
Sbjct: 683 LEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLEKAL 742

Query: 456 EDRSKNLELKEKKLSNNLHLQ 476
           E   +  E   K       L+
Sbjct: 743 ELLEELREKLGKAGLRADILR 763

Length = 908

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 66.7 bits (163), Expect = 5e-11
 Identities = 75/322 (23%), Positives = 148/322 (45%), Gaps = 26/322 (8%)

Query: 168 IKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKL---- 223
           +  + E+ E  E+ L +   ++E  E  L   EK    L+   E      E K +L    
Sbjct: 167 VSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELE 226

Query: 224 YDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSK 283
              +   + +   +L+  ++EL   +  + EL  EL   E+++E L       ++EL+  
Sbjct: 227 LALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEEL-------KSELEEL 279

Query: 284 EEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEF 343
            E+L+ ++EE+ +   +IE  E E + +R+ +E+   EL   E++L+ ++E +E  + E 
Sbjct: 280 REELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEEL 339

Query: 344 EEKENELISVEKLIDKCSEE-----------LELKKKHLCVIENSAAELSDECESNELEL 392
           EE+E  L  +E+L+ +  E            LE  ++    +    AEL  E      EL
Sbjct: 340 EERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNEL 399

Query: 393 DLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIR 452
           + ++      ++ L+E+ ++     E L E  ++LE +  + +  ++E     +E+E   
Sbjct: 400 EELKRE----IESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQL 455

Query: 453 KAVEDRSKNLELKEKKLSNNLH 474
           + + DR K LE +  +L   L 
Sbjct: 456 EELRDRLKELERELAELQEELQ 477

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 66.3 bits (162), Expect = 8e-11
 Identities = 75/327 (22%), Positives = 150/327 (45%), Gaps = 18/327 (5%)

Query: 5   DNNKEELRL-AESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDA 63
           +   E+L   AE  +       +L   +   +L    + K+L + L+   + L +   + 
Sbjct: 199 EKQLEKLERQAEKAERYQELKAELRELELALLL---AKLKELRKELEELEEELSRLEEEL 255

Query: 64  DSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKE 123
           +     L++  KEIE  +S+L      ++E   EL   ++++E +   I      L+  E
Sbjct: 256 EELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELE 315

Query: 124 GELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLR 183
            EL  +++ +EE  EK++   +E+       ++       LE L+ +  E  E  E+ L 
Sbjct: 316 NELEELEERLEELKEKIEALKEEL-------EERETLLEELEQLLAELEEAKEELEEKLS 368

Query: 184 KIRSSIEE----CEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLD 239
            +   +EE      +EL   E   + +++ +E+   E+ES E+  + + + +   + +L 
Sbjct: 369 ALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELK 428

Query: 240 CKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKY-- 297
             + ELE  QT + EL+ EL   EE+LE L+  ++  E EL   +E+L  +++E+     
Sbjct: 429 ELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEA 488

Query: 298 -FNDIELKEREFNGIRKCIEKRSQELT 323
             + +E ++R   G+R  +E     L 
Sbjct: 489 RLDRLEAEQRASQGVRAVLEALESGLP 515

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 63.5 bits (155), Expect = 5e-10
 Identities = 71/331 (21%), Positives = 149/331 (45%), Gaps = 33/331 (9%)

Query: 38  FTVQWKDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFE 97
           F+       + L   ++ L+++ +   S++R ++ R  E+  + SD   A R+I E   E
Sbjct: 668 FSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSD---ASRKIGEIEKE 724

Query: 98  LACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKS 157
           +   E++ E +++R+ E E +L   E E+  VK  ++E   +++   +++  +E++    
Sbjct: 725 IEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEA---- 780

Query: 158 LVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEEL 217
                 L +L      +  L    + +I++ + + E+E+   E     ++  +     E 
Sbjct: 781 ------LNDL------EARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEK 828

Query: 218 ESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRE 277
           E  EK   E+++  I  + ++   +KE+E       EL       EE+LE L+       
Sbjct: 829 EYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEEL-------EEELEELE----AAL 877

Query: 278 NELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLE 337
            +L+S+   L   ++E++    ++E K  E     +   KR  EL  K + L+     +E
Sbjct: 878 RDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIE 937

Query: 338 GCRNEFEEKENELISVEKL---IDKCSEELE 365
             + E EE   E +S+E +   + +  EE+ 
Sbjct: 938 DPKGEDEEIPEEELSLEDVQAELQRVEEEIR 968

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 63.2 bits (154), Expect = 6e-10
 Identities = 79/364 (21%), Positives = 174/364 (47%), Gaps = 14/364 (3%)

Query: 8    KEELRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKI 67
            K EL+  E +   L    +    +  S+ N     +DL E L   ++ LE+Q  +   ++
Sbjct: 666  KRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKREL 725

Query: 68   RLLDQRAKEIESKESDLV----LAERRIKECNFELACKEKQLELVRKRIGECECELQLKE 123
              L++  ++++S+  +L       E  ++E    L   E++LE + + + + + E++  E
Sbjct: 726  AALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELE 785

Query: 124  GELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLR 183
             +   +++ +EE  E+L+   + +  +E+  +     + RLE  I++  E+IE  E+ L 
Sbjct: 786  EKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLD 845

Query: 184  KIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKK 243
            ++   +EE EKEL   ++    L++  E+  +EL+  E+  +E+++ + + E++L   K+
Sbjct: 846  ELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKE 905

Query: 244  ELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIEL 303
            E+E  +  +    LE  LE  ++E  +    L E   D+ E +L+   E +++     E+
Sbjct: 906  EIEKLRERL--EELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEE-----EI 958

Query: 304  KEREFNGIR--KCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISV-EKLIDKC 360
            +      +R  +  E+  +     + Q + ++E+ E      EE + E     ++  DK 
Sbjct: 959  EALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKI 1018

Query: 361  SEEL 364
            +E  
Sbjct: 1019 NENF 1022

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 63.2 bits (154), Expect = 6e-10
 Identities = 94/404 (23%), Positives = 200/404 (49%), Gaps = 13/404 (3%)

Query: 96  FELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSND 155
           F L   EK  EL+++ I E + +++  EG+L+ + + +E+ LE L+ ++KE+  +E+  +
Sbjct: 164 FGLEKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQE 223

Query: 156 KSLVDQRRLENLIKDFCEQI---ELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIED 212
           +   ++  LE  I+   E++   E +++ L ++++ + E E   +   K        +E 
Sbjct: 224 EQ--EEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELER 281

Query: 213 YAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRI 272
             EELE K +  +E+++ I + E +L+  +  LE  +  + +L       E+  E L+++
Sbjct: 282 LLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKL 341

Query: 273 VRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCV 332
               E   + K E    ++E +K+    +E  E+E     + +++  + +   +++L  +
Sbjct: 342 ESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAEL 401

Query: 333 QESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELEL 392
             +LE  + E EE E EL  +E+ +++  EE++  ++ +  +E+    +++   + E   
Sbjct: 402 SAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCP 461

Query: 393 DLIQTMAIGYLKQLKE-KEKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESI 451
              Q +   + K+L E  E +   L+E L    ++ E++E + EE  KE    E+E+  +
Sbjct: 462 VCGQELPEEHEKELLELYELELEELEEELSREKEEAELRE-EIEELEKELRELEEELIEL 520

Query: 452 RKAVEDRSKNLELKEKKLSNNLHLQVKIEQPESLKGNEGTKQLS 495
            +  E   + LE K +KL N       +E+ E LK     +QL 
Sbjct: 521 LELEEALKEELEEKLEKLEN------LLEELEELKEKLQLQQLK 558

Length = 908

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 63.2 bits (154), Expect = 7e-10
 Identities = 67/304 (22%), Positives = 138/304 (45%), Gaps = 24/304 (7%)

Query: 200 EKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLEL 259
           ++    L+  + +   +LE  E+    +K  +   E  L+  +++LE  +  + EL  EL
Sbjct: 666 KRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKREL 725

Query: 260 HLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRS 319
              EE+LE LQ  +   E EL+  EE+L+ ++E +++        E E   + + + K  
Sbjct: 726 AALEEELEQLQSRLEELEEELEELEEELEELQERLEE-------LEEELESLEEALAKLK 778

Query: 320 QELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAA 379
           +E+   E++ + +QE LE    E EE E  L ++E+ ++   +  E  ++ +  +E    
Sbjct: 779 EEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIE 838

Query: 380 ELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVK 439
           EL ++ +  E EL+ ++       ++L+E E +   L++ L E            EE  +
Sbjct: 839 ELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKE-----------LEEEKE 887

Query: 440 EFELREKEIESIRKAVEDRSKNLELKEKKLSNNLHLQVKIEQPESLKGNEGTKQLSLQSC 499
           E    E+E+  +   + +  + +E   ++L     L+ K+E+ E        +       
Sbjct: 888 E---LEEELRELESELAELKEEIEKLRERLE---ELEAKLERLEVELPELEEELEEEYED 941

Query: 500 TMIT 503
           T+ T
Sbjct: 942 TLET 945

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 62.8 bits (153), Expect = 8e-10
 Identities = 53/261 (20%), Positives = 118/261 (45%), Gaps = 14/261 (5%)

Query: 210 IEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESL 269
           IE+  E++E  E+   E++K++ +   +L+  ++ELE  +  + ELS ++    + L  L
Sbjct: 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARL 738

Query: 270 QRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQL 329
           +  V   E  +    ++L  ++ E+++    +E  E E       IE+   ++   +++L
Sbjct: 739 EAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEEL 798

Query: 330 KCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNE 389
           K ++E+L+  R E      E  ++ + ++     +   ++ L  +E    ELS++ ES  
Sbjct: 799 KALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA 858

Query: 390 LELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIE 449
            E++ ++ +      +L+    +  SL+EAL                   E E   +E+ 
Sbjct: 859 AEIEELEELIEELESELEALLNERASLEEAL--------------ALLRSELEELSEELR 904

Query: 450 SIRKAVEDRSKNLELKEKKLS 470
            +     +  + LE   +KL+
Sbjct: 905 ELESKRSELRRELEELREKLA 925

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 62.1 bits (150), Expect = 2e-09
 Identities = 97/490 (19%), Positives = 208/490 (42%), Gaps = 18/490 (3%)

Query: 9    EELRLAESKK--EILRRSYDLAHA-QANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADS 65
            +EL+ AE KK  +  +++ +   A +A        +  + ++  + + K  +     A+ 
Sbjct: 1281 DELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEE 1340

Query: 66   KIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGE 125
              +  +    E E+   +   AE + +    +    +K+ +  +K+  E +   + K+ +
Sbjct: 1341 AKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKK-K 1399

Query: 126  LNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKI 185
                KK  +E  +    K K     +K+ +K   D+ + +       ++ + K ++ +K 
Sbjct: 1400 AEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKA 1459

Query: 186  RSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKEL 245
              + ++ E+      K A   +   E+  +  E+K+K  +E KK   + +   + KKK  
Sbjct: 1460 EEAKKKAEEA-----KKADEAKKKAEEAKKADEAKKKA-EEAKKKADEAKKAAEAKKKAD 1513

Query: 246  ELTQTSIIELSLELHLEEE--KLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIEL 303
            E  +    + + E    EE  K +  ++    ++ +   K E+L    EE KK     + 
Sbjct: 1514 EAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKK-AEEKKKAEEAKKA 1572

Query: 304  KEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEE 363
            +E +   +RK  E +  E    E+ +K  +E  +    E ++ E   I  E+L     ++
Sbjct: 1573 EEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEEL-----KK 1627

Query: 364  LELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDER 423
             E +KK +  ++   AE   + E  +   +  +  A    K+ +E +K+    K+A ++ 
Sbjct: 1628 AEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDE 1687

Query: 424  WQDLEIKERKFEERVKEFELREKEIESIRKAVEDRSKNLELKEKKLSNNLHLQVKIEQPE 483
             +  E  +++ EE  K  EL++KE E  +KA E +    E K K        +   ++ E
Sbjct: 1688 KKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAE 1747

Query: 484  SLKGNEGTKQ 493
              K +E  K+
Sbjct: 1748 EAKKDEEEKK 1757

Length = 2084

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 60.5 bits (147), Expect = 5e-09
 Identities = 52/236 (22%), Positives = 115/236 (48%), Gaps = 14/236 (5%)

Query: 246 ELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKE 305
             T +SI+E   E+   EEK+E L+  +   E  L    ++L+ ++EE+++   ++E   
Sbjct: 666 AKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELS 725

Query: 306 REFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELE 365
           R+ + +RK + +   E+   E+++      L     E E +  EL   E+ +++  EEL 
Sbjct: 726 RQISALRKDLARLEAEVEQLEERI----AQLSKELTELEAEIEEL---EERLEEAEEELA 778

Query: 366 LKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQ 425
             +  +  +E    +L +E ++    LD ++        +L    ++  +L+E L+   +
Sbjct: 779 EAEAEIEELEAQIEQLKEELKALREALDELR-------AELTLLNEEAANLRERLESLER 831

Query: 426 DLEIKERKFEERVKEFELREKEIESIRKAVEDRSKNLELKEKKLSNNLHLQVKIEQ 481
            +   ER+ E+  ++ E   ++IES+   +E+  + +E  E +L   L+ +  +E+
Sbjct: 832 RIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEE 887

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 60.1 bits (146), Expect = 5e-09
 Identities = 63/346 (18%), Positives = 132/346 (38%), Gaps = 46/346 (13%)

Query: 8    KEELRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKI 67
              EL+    + E L+R      ++   + N   +           +  +EK+    + + 
Sbjct: 673  PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEE 732

Query: 68   RLLDQRAKEIESK----ESDLVLAERRIKECNFELACKEKQLELVRKRIGECECEL---- 119
              L +R +E+E      E ++   +  +KE    +   E+ L  + + + + E  L    
Sbjct: 733  EKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSR 792

Query: 120  -QLKEGELNLVKKSVEEW---LEKLDLKMKEVGLVEKSNDKS---LVDQRR-LENLIKDF 171
                + EL+ +++ V      L +++ K+  + L ++  +K    L +QR  L+  IK  
Sbjct: 793  IPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSI 852

Query: 172  CEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSI 231
             ++IE       ++   +EE E  L   E     L+   ++   +L   E+  +E++  I
Sbjct: 853  EKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQI 912

Query: 232  IQCETKLDCKK----------KELELTQTSIIELSLEL----HLEEEKLESLQRIVRL-- 275
             +   +L   K           E+E  +    E+  E      ++ E     + I  L  
Sbjct: 913  EKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEP 972

Query: 276  --------------RENELDSKEEKLDAMKEEMKKYFNDIELKERE 307
                          R +EL  K  KL+  ++ + +   + E K+RE
Sbjct: 973  VNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 59.7 bits (145), Expect = 8e-09
 Identities = 56/248 (22%), Positives = 116/248 (46%), Gaps = 14/248 (5%)

Query: 230 SIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDA 289
           SI++   +++  ++++E  +  I EL   L    ++LE L+  +     EL+    ++ A
Sbjct: 671 SILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISA 730

Query: 290 MKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENE 349
           +++++ +   ++E  E         I + S+ELT  E +++ ++E LE    E  E E E
Sbjct: 731 LRKDLARLEAEVEQLEER-------IAQLSKELTELEAEIEELEERLEEAEEELAEAEAE 783

Query: 350 LISVEKLIDKCSEELELKKKHLCVIENSAAELSDE-------CESNELELDLIQTMAIGY 402
           +  +E  I++  EEL+  ++ L  +      L++E        ES E  +   +      
Sbjct: 784 IEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDL 843

Query: 403 LKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIRKAVEDRSKNL 462
            +Q++E  +   SL   ++E  + +E  E + E  + E    E+ +  +R  +E+ S+ L
Sbjct: 844 EEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEEL 903

Query: 463 ELKEKKLS 470
              E K S
Sbjct: 904 RELESKRS 911

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 59.3 bits (144), Expect = 1e-08
 Identities = 59/277 (21%), Positives = 110/277 (39%), Gaps = 27/277 (9%)

Query: 44  DLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEK 103
            LEE     +  LE++  +   +   L   A EI   E    +   R+     +L   E 
Sbjct: 268 KLEELRLE-VSELEEEIEELQKE---LYALANEISRLEQQKQILRERLANLERQLEELEA 323

Query: 104 QLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRR 163
           QLE +  ++ E   EL   E +L  +K+ +E    +L+    E                 
Sbjct: 324 QLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAE--------------LEE 369

Query: 164 LENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKL 223
           LE+ +++  EQ+E     + ++   I     E+   E     L+   E   +E+E   K 
Sbjct: 370 LESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKK 429

Query: 224 YDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSK 283
            +E +   +Q   +L+  ++ELE  Q  +  L   L    E+LE  ++ +   E EL   
Sbjct: 430 LEEAELKELQ--AELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQL 487

Query: 284 EEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQ 320
           + +LD+++          E  E    G++  ++ +S 
Sbjct: 488 QARLDSLERLQ-------ENLEGFSEGVKALLKNQSG 517

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 56.6 bits (137), Expect = 6e-08
 Identities = 99/434 (22%), Positives = 184/434 (42%), Gaps = 56/434 (12%)

Query: 43  KDLEEHLDISMKSLEKQSNDADSKI-RLLDQRAKEIESKE-SDLVLAERRIKECNFELAC 100
           KDL E L+     LE +  + D +I R  +QR +  E+++ +D VL E    E   EL  
Sbjct: 202 KDLHERLN----GLESELAELDEEIERYEEQREQARETRDEADEVLEEHE--ERREELET 255

Query: 101 KEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVD 160
            E ++E +R+ I E E E +    E+  +++ +EE  E+ D  + E GL +         
Sbjct: 256 LEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDAD------- 308

Query: 161 QRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESK 220
                   +    + E  E    ++R  +EEC        + A SL+   +D  E  E  
Sbjct: 309 -------AEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEEL 361

Query: 221 EKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENEL 280
            +   E++  + +    ++ +++E+E       EL       EE++E L+        +L
Sbjct: 362 REEAAELESELEEAREAVEDRREEIE-------EL-------EEEIEELRERFGDAPVDL 407

Query: 281 DSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQ------- 333
            + E+ L+ ++EE  +        E      R+ +E+ ++ L    K  +C Q       
Sbjct: 408 GNAEDFLEELREERDELREREAELEATLRTARERVEE-AEALLEAGKCPECGQPVEGSPH 466

Query: 334 -ESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELEL 392
            E++E  R   EE E EL  +E+ +++  E LE  +           E  D  E  E   
Sbjct: 467 VETIEEDRERVEELEAELEDLEEEVEEVEERLERAE--------DLVEAEDRIERLEERR 518

Query: 393 DLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKE---RKFEERVKEFELREKEIE 449
           + ++ +     + ++EK ++   L+E   E   + E K     + EE  +E      E+ 
Sbjct: 519 EDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELN 578

Query: 450 SIRKAVEDRSKNLE 463
           S    +++R ++LE
Sbjct: 579 SKLAELKERIESLE 592

Length = 880

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 55.4 bits (133), Expect = 1e-07
 Identities = 70/342 (20%), Positives = 128/342 (37%), Gaps = 25/342 (7%)

Query: 101 KEKQLELVRKRIGECECELQLK------EGELNLVKKSVEEWLEKLDLKMKEVGLVEKSN 154
            E+   L    I   E +LQ        +  L   +   +  LE+ +L   +   + +  
Sbjct: 180 IEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEER 239

Query: 155 DKSLVDQRRLENLIKDFCEQIELKEKD-LRKIRSSIEECEKELVMKEKHASSLQSLIEDY 213
              L +  R E    +  +Q   KE++ L ++    +E EKE  ++E+    L    E+ 
Sbjct: 240 IDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEEL 299

Query: 214 AEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELS----------LELHLEE 263
             EL   E+   + ++ + + E +L   +KEL+  +  I EL                EE
Sbjct: 300 KSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEE 359

Query: 264 EKLESLQRIVRLRENELD-SKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQEL 322
           E+LE LQ  +   E EL   K+ + + +    K    ++ELK  E    +  +E   QE 
Sbjct: 360 EQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLELSEQEE 419

Query: 323 TL-------KEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIE 375
            L       + K ++ ++ESLE  + +  E++ EL      + K   EL+  +  L   +
Sbjct: 420 DLLKEEKKEELKIVEELEESLETKQGKLTEEKEELEKQALKLLKDKLELKKSEDLLKETK 479

Query: 376 NSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLK 417
                   E      +L+          + L           
Sbjct: 480 LVKLLEQLELLLLRQKLEEASQKESKAREGLAVLLALIKDGV 521

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 55.4 bits (134), Expect = 2e-07
 Identities = 63/318 (19%), Positives = 127/318 (39%), Gaps = 16/318 (5%)

Query: 6   NNKEELRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADS 65
             + E+   E K E L             +     + ++  E L   ++ L +Q +    
Sbjct: 674 ERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRK 733

Query: 66  KIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGE 125
            +  L+    E+E  E  +    + + E   E+   E++LE   + + E E E++  E +
Sbjct: 734 DLARLEA---EVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQ 790

Query: 126 LNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKI 185
           +  +K+ ++   E LD    E+ L+ +           LE  I     ++E  E+ + ++
Sbjct: 791 IEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEEL 850

Query: 186 RSSIEECEKEL----VMKEKHASSLQSLIEDYA---EELESKEKLYDEIKKSIIQCETKL 238
              IE    E+     + E+  S L++L+ + A   E L       +E+ + + + E+K 
Sbjct: 851 SEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKR 910

Query: 239 DCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYF 298
              ++ELE  +  + +  LEL LE  ++       RL E    +    L+  +    K  
Sbjct: 911 SELRRELEELREKLAQ--LELRLEGLEVRIDNLQERLSEEYSLT----LEEAEALENKIE 964

Query: 299 NDIELKEREFNGIRKCIE 316
           +D E   R    +   I+
Sbjct: 965 DDEEEARRRLKRLENKIK 982

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|129694 TIGR00606, rad50, rad50

 Score = 53.9 bits (129), Expect = 4e-07
 Identities = 92/516 (17%), Positives = 190/516 (36%), Gaps = 61/516 (11%)

Query: 40  VQWKDLEEHLDISMKSLEKQSNDADSKIRLLDQ---RAKEIESKESDLVLAERRIK--EC 94
            + K L   +++  + LEK+  +    I+ L Q    +  I   + +L  AER +   E 
Sbjct: 433 DEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEK 492

Query: 95  NFELACK---EKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVE 151
           N          K L+  +  +     +L  +  +LN    +  +       KM +   + 
Sbjct: 493 NSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIR 552

Query: 152 KSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIE 211
           K   +       L +L+  F  + +L E  L      I +    L    K  +SL+    
Sbjct: 553 KIKSRH---SDELTSLLGYFPNKKQL-EDWLHSKSKEINQTRDRLAKLNKELASLEQNKN 608

Query: 212 DYAEELESKEKLYDEIKKSIIQC------ETKLDCKKKELELTQTSIIELSLELHLEEEK 265
               ELESKE+     +  +         E+ L+  K+E+E +      L+    +  + 
Sbjct: 609 HINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQF 668

Query: 266 LESL-----------QRIVRLRE--NELDSK-EEKLDAMKEEMKKYFNDIELKEREFNGI 311
           +  L           QR+ +      E  S  + KL    +++K   ++++ KE+  + +
Sbjct: 669 ITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEM 728

Query: 312 RKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHL 371
                 R   + LKEK++  ++  L+    + +  +N++   E L+     E E  K   
Sbjct: 729 LGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAK--- 785

Query: 372 CVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKE 431
                        C ++   ++  Q        +LK+ E++       L     D  +++
Sbjct: 786 ------------VCLTDVTIMERFQ-------MELKDVERKIAQQAAKLQGSDLDRTVQQ 826

Query: 432 RKFEERVKEFELRE--KEIESIRKAVEDRSKNLELKEKKL----SNNLHLQVKIEQPESL 485
              E++ K+ EL     +IE  RK ++D+ + ++  + K     S  L +   +++ +  
Sbjct: 827 VNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQF 886

Query: 486 KGNEGTKQLSLQSC-TMITGKNLQLLLNQHLQKHDL 520
           +         +QS    I     Q    +   + D 
Sbjct: 887 EEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQ 922

All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 1311

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 53.5 bits (129), Expect = 6e-07
 Identities = 49/229 (21%), Positives = 111/229 (48%), Gaps = 10/229 (4%)

Query: 262 EEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQE 321
           E  +L+ L+  +   + EL S + +L  ++  + +   ++    R+   I K IE+  QE
Sbjct: 672 EPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQE 731

Query: 322 LTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAA-- 379
               +++L+ ++E L     E E  ++EL  +E  I++  E+L   ++ L  +E   +  
Sbjct: 732 EEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHS 791

Query: 380 ---ELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEE 436
              E+  E    E E+  I+      L+++++K  +    KE L++  Q+L+ +    +E
Sbjct: 792 RIPEIQAELSKLEEEVSRIE----ARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKE 847

Query: 437 RVKEFELREKEIESIRKAVEDRSKNLELKEKKLSNNL-HLQVKIEQPES 484
           ++K  E   + +   ++ +E+  + LE   + L + L  L+ + ++ E+
Sbjct: 848 QIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEA 896

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 53.4 bits (128), Expect = 6e-07
 Identities = 72/344 (20%), Positives = 135/344 (39%), Gaps = 7/344 (2%)

Query: 175 IELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQC 234
           IE  E     I    E   +EL +KE+   +L+        ELE +  LY +  K     
Sbjct: 180 IEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKL---N 236

Query: 235 ETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEM 294
           E ++D  ++ L   Q  I     EL  EEE L  + +  +  E E   +EE+L  + +E 
Sbjct: 237 EERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEE 296

Query: 295 KKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVE 354
           ++  +++   ER      + +++  +EL   EK+LK  +E +E    E +E E +  + E
Sbjct: 297 EELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEE 356

Query: 355 KLIDKCSEELELKKKHLCVIENSAAELSDECES----NELELDLIQTMAIGYLKQLKEKE 410
           +  ++  +  E  ++    +       S+   S     E EL+L           L+  E
Sbjct: 357 EEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLELSE 416

Query: 411 KQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIRKAVEDRSKNLELKEKKLS 470
           ++   LKE   E  + +E  E   E +  +    ++E+E     +      L+  E  L 
Sbjct: 417 QEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEELEKQALKLLKDKLELKKSEDLLK 476

Query: 471 NNLHLQVKIEQPESLKGNEGTKQLSLQSCTMITGKNLQLLLNQH 514
               +++  +    L   +  +    +S        L  L+   
Sbjct: 477 ETKLVKLLEQLELLLLRQKLEEASQKESKAREGLAVLLALIKDG 520

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 53.1 bits (128), Expect = 8e-07
 Identities = 64/313 (20%), Positives = 127/313 (40%), Gaps = 27/313 (8%)

Query: 168 IKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEI 227
           + +F  + E   ++L ++  +IE  +  L++ EK     Q L E    E E  E+ Y  +
Sbjct: 165 VAEFDRKKEKALEELEEVEENIERLD--LIIDEK----RQQL-ERLRREREKAER-YQAL 216

Query: 228 KKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKL 287
            K   + E       KE E  +     +  +L   EE+LE L   +   E  L+  E+ L
Sbjct: 217 LKEKREYEGYE--LLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLL 274

Query: 288 DAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKE 347
           + + +++K       L E E   +++ I +   E+   E+ +   +  LE       + E
Sbjct: 275 EELNKKIKD------LGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLE 328

Query: 348 NELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLK 407
            E+  +   I++   E+E ++K    +    AEL +E E    EL+ +         + +
Sbjct: 329 AEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEF----AETR 384

Query: 408 EKEKQFHSLKEALDERWQDLEIKERKFEERVKEFELR----EKEIESIR---KAVEDRSK 460
           ++ K +    E L     +L+ +  + +E ++            I  I      +E+  +
Sbjct: 385 DELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKE 444

Query: 461 NLELKEKKLSNNL 473
           +  L+ KK    L
Sbjct: 445 DKALEIKKQEWKL 457

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|220614 pfam10174, Cast, RIM-binding protein of the cytomatrix active zone

 Score = 52.3 bits (125), Expect = 1e-06
 Identities = 76/385 (19%), Positives = 159/385 (41%), Gaps = 40/385 (10%)

Query: 103 KQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQR 162
            +L L+R  + + +  ++  +  L+   + +++ LE L  K       E+ +++ L   R
Sbjct: 128 MELFLLRDTLEKLQLRMERLQQTLDARDEEIKKLLEMLQSKGLSAKAEEEDSER-LGRIR 186

Query: 163 RLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEK 222
             E+        +E KEK+   +R   EE  ++L M+   A +            E+ +K
Sbjct: 187 EAEDQQSHLEVLLEQKEKEHMMLR---EEIHQKLQMERDDAKT------------EASQK 231

Query: 223 LYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDS 282
           L DE    I + E  L+  + E+   Q+       + +  ++++E+ +  +   + + D 
Sbjct: 232 LIDEKDTKIKEFEKMLEKAENEIYRLQSRCDTSEADRNRLDKEVEAERSALAAMKAKCDR 291

Query: 283 KEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNE 342
             ++L   K E+     ++E    + + +R+ ++K  ++LT  E++   +Q  ++  R E
Sbjct: 292 AAQELSRKKTELLGLQTELETLANQDSDMRQHLDKLKEDLTRAEQEKAILQTEVDALRYE 351

Query: 343 FEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGY 402
            E K N L      +    EE       +        ++ D  E  E +L ++Q      
Sbjct: 352 LERKHNTLTKKTASLQAAQEEKATYAGEI-------EDMRDRYEKTERKLRVLQKKIENL 404

Query: 403 LKQLKEKEKQFHSLKEALDERWQDLE-----------------IKERKFEERVKEFELRE 445
            +  + KE++    KE L     D                   I ER  E+R ++    +
Sbjct: 405 QETFRRKERRLKEEKERLRSLQTDTNTDTALEKLEKALAEKERIIERLKEQRDRDERYEQ 464

Query: 446 KEIESIRKAVEDRSKNLELKEKKLS 470
           +E E+ +K  ED  + ++  + KLS
Sbjct: 465 EEFETYKKEFEDLKEEVQNLQLKLS 489

This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains. Length = 774

>gnl|CDD|129694 TIGR00606, rad50, rad50

 Score = 51.6 bits (123), Expect = 2e-06
 Identities = 98/501 (19%), Positives = 209/501 (41%), Gaps = 52/501 (10%)

Query: 4    CDNNKEELRLAESKKEILRRSYDLAHAQANSVL--NFTVQWKD-------LEEHLDISMK 54
            C +  EE  L   K+EI + S   A     + +   F  Q  D       + + +  +  
Sbjct: 632  CGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEA 691

Query: 55   SLEKQSNDADSKIRLLDQRAKEIES------KESDLVLAERRIKECNFELACKEKQLELV 108
             L++  +D  SK+RL   + K  ES      K  D +L     ++    +  KEK++  +
Sbjct: 692  ELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQS--IIDLKEKEIPEL 749

Query: 109  RKRIGECECELQLKEGELNLVKKSVEEWLEKLDLK---MKEVGLVEKSNDKSLVDQRRLE 165
            R ++ +   ++Q  + ++   +  +   + + +     + +V ++E+   +    +R++ 
Sbjct: 750  RNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIA 809

Query: 166  NLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYD 225
                   +  +L ++ ++++    +E + EL          + LI+D  E+++  +   +
Sbjct: 810  QQAAKL-QGSDL-DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTN 867

Query: 226  EIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEE 285
            E+K   +Q  T L  +++  E       E+   +   ++  E    +    E +   KEE
Sbjct: 868  ELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEE 927

Query: 286  KLDAMKEEMKKY---FNDIELKEREFNGIRKCIEKRSQE-----LTLKEKQLKCVQESLE 337
             + + +   KK     NDI+ K +  +G  K IE + Q+     L  KE +L  V   LE
Sbjct: 928  LISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLE 987

Query: 338  GCRNEFEEKENEL--------------------ISVEKLIDKCSEELELKKKHLCVI-EN 376
             C    E+   ++                    +++ K  ++  E  E  K+HL  + + 
Sbjct: 988  ECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQM 1047

Query: 377  SAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQ-FHSLKEALDERWQDLEIKERKFE 435
               ++  E +  E  +DLI+   +  L + K  EK+  H  KE  + +++D E K R+  
Sbjct: 1048 QVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAEEKYREMM 1107

Query: 436  ERVKEFELREKEIESIRKAVE 456
              ++  EL  K+++   K ++
Sbjct: 1108 IVMRTTELVNKDLDIYYKTLD 1128

All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 1311

>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional

 Score = 51.1 bits (122), Expect = 3e-06
 Identities = 80/447 (17%), Positives = 164/447 (36%), Gaps = 35/447 (7%)

Query: 43  KDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKE 102
           KD+ + L   + +++       S    L+   K+I   E    +  + I+  + E     
Sbjct: 172 KDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAM 231

Query: 103 KQLELVRKRIGECECELQLK---EGELNLVKKSVEEWLEKLD-LKMKEVGLVEKSNDKSL 158
                ++  + E      +K   E E+   +  +   LEK +  K  E   ++  ND   
Sbjct: 232 DDYNNLKSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVY 291

Query: 159 VDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAE--- 215
            ++  + +  K     IE K++ L  I + I +    +    K  S LQ    DY +   
Sbjct: 292 KNRNYINDYFKYK-NDIENKKQILSNIDAEINKYHAII----KKLSVLQKDYNDYIKKKS 346

Query: 216 ----------ELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEK 265
                     ELE  E  Y+   KSI   + K++   K +E     I E+     ++ + 
Sbjct: 347 RYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDA 406

Query: 266 LESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLK 325
           ++     + ++  ++ SK   L+     +++  +++       NG   C    +     K
Sbjct: 407 IKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLGEEK 466

Query: 326 EKQL-KCVQESLEGCRNEFEEKENELISV-EKLIDKCSEELELKKKHLCVIENSAAELSD 383
              +     E       +  E E E+  + EK++D    +  L+ + +    N   ++  
Sbjct: 467 SNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIES 526

Query: 384 ECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFEL 443
                +LE   I+      + +LK+K  ++  +K     +   LE  + K    +    +
Sbjct: 527 --ARADLEDIKIK------INELKDKHDKYEEIKNRY--KSLKLEDLDSKRTSWLNALAV 576

Query: 444 REK-EIESIRKAVEDRSKNLELKEKKL 469
               +IE+ R    +  K L   E +L
Sbjct: 577 ISLIDIETNRSRSNEIKKQLNDLESRL 603

Length = 895

>gnl|CDD|221952 pfam13166, AAA_13, AAA domain

 Score = 50.4 bits (121), Expect = 4e-06
 Identities = 42/210 (20%), Positives = 91/210 (43%), Gaps = 20/210 (9%)

Query: 163 RLENLIKD-FCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKE 221
            LE    + + E IE  E+ + K  S IE+  +EL    +     +    ++  ++E  +
Sbjct: 271 ELEAHFDEEYQELIEQLEELIDKYESHIEKALEEL----ESILDTEKENSEFKLDVEELK 326

Query: 222 KLYDEIKKSIIQCETKLDCKKK------ELELTQTSIIELSLELHLEEEKLESLQRIVRL 275
            L + +++ + +   KL+ K K      ELE     I  ++  +    E +      +  
Sbjct: 327 ALLEALEEILEKNLQKLEEKLKDPSTSIELESITDLIESINDIIDAINELIREHNEKIDN 386

Query: 276 RENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQES 335
            + E +  ++KL      + +   DI+  ++E  G+ K I          EK++K ++  
Sbjct: 387 LKKEKNKAKKKL--WLHLVAELKEDIDAYQKEKKGLEKAINS-------LEKEIKQLEAE 437

Query: 336 LEGCRNEFEEKENELISVEKLIDKCSEELE 365
           ++    E +E E +L ++E   D+ ++ L+
Sbjct: 438 IKALEKEIKELEKQLTNIEPTADEINKLLK 467

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease. Length = 713

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 50.1 bits (120), Expect = 6e-06
 Identities = 54/238 (22%), Positives = 115/238 (48%), Gaps = 27/238 (11%)

Query: 261 LEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQ 320
            ++ +L+ L+  +   E +L+  EE+L ++K E++   + +E   R+   + + +E+  +
Sbjct: 664 AQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKR 723

Query: 321 ELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAE 380
           EL   E++L+ +Q  LE    E EE E EL  +++ +++  EELE  ++ L  ++    E
Sbjct: 724 ELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEE 783

Query: 381 LSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKE 440
           L ++ ++ + EL+ ++       ++L+E E++  +L+  L+   Q  E  E         
Sbjct: 784 LEEKRQALQEELEELE-------EELEEAERRLDALERELESLEQRRERLE--------- 827

Query: 441 FELREKEIESIRKAVEDRSKNLELKEKKLSNNLHLQVKIEQPESLKGNEGTKQLSLQS 498
                +EIE + + +E      EL+EK       L+   ++ E LK      +   + 
Sbjct: 828 -----QEIEELEEEIE------ELEEKLDELEEELEELEKELEELKEELEELEAEKEE 874

Length = 1163

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 49.2 bits (117), Expect = 1e-05
 Identities = 61/262 (23%), Positives = 115/262 (43%), Gaps = 13/262 (4%)

Query: 249 QTSIIELSLELH-----------LEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKY 297
           +  I E +               L EE     + I+ L E +L   + K  A K+ ++ Y
Sbjct: 156 RLEIEEEAAGSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQA-KKALEYY 214

Query: 298 FNDIELKEREFNGIRKCIEKRSQE-LTLKEKQLKCVQESLEGCRNEFEEKENELISVEKL 356
               +L+  E N +     K ++E + L ++ L+  QE +E  + E E++E  L  V K 
Sbjct: 215 QLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKE 274

Query: 357 IDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSL 416
             +  +E +L+++ L ++     EL  E    E      +       K+LK+ EK+    
Sbjct: 275 NKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKE 334

Query: 417 KEALDERWQDLEIKERKFEERVKEFELREKEIESIRKAVEDRSKNLELKEKKLSNNLHLQ 476
           KE ++E  ++L+  E K E   +E E  EK  E + +  E+     +L+ ++LS+   L+
Sbjct: 335 KEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLK 394

Query: 477 VKIEQPESLKGNEGTKQLSLQS 498
            +  + ++ +  E    L L  
Sbjct: 395 EEELELKNEEEKEAKLLLELSE 416

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 48.1 bits (115), Expect = 2e-05
 Identities = 57/263 (21%), Positives = 123/263 (46%), Gaps = 19/263 (7%)

Query: 217 LESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLR 276
           L+  E  Y  + + I + + +++  +K ++  +T  IE  ++   E+E  E L+ I    
Sbjct: 157 LDDYENAYKNLGEVIKEIKRRIERLEKFIK--RTENIEELIK-EKEKELEEVLREI---- 209

Query: 277 ENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESL 336
            NE+ S+  +L    E+++K   ++E  + E   + K +E         E++++ ++E +
Sbjct: 210 -NEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERI 268

Query: 337 EGCRNEFEEKENELISVEKLIDKCSEELELKK------KHLCVIENSAAELSDECESNEL 390
           E  + E EE E ++  +++L +K  E ++L +        L  IE   + L +E    E 
Sbjct: 269 EELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEE 328

Query: 391 ELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLE----IKERKFEERVKEFELREK 446
            +  ++      L++LK+K K+     E L+ER +  E     KE     + +   L  +
Sbjct: 329 RIKELEEKE-ERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPE 387

Query: 447 EIESIRKAVEDRSKNLELKEKKL 469
           ++E   + +E   + +E +  K+
Sbjct: 388 KLEKELEELEKAKEEIEEEISKI 410

Length = 880

>gnl|CDD|220614 pfam10174, Cast, RIM-binding protein of the cytomatrix active zone

 Score = 48.1 bits (114), Expect = 2e-05
 Identities = 45/258 (17%), Positives = 112/258 (43%), Gaps = 4/258 (1%)

Query: 155 DKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYA 214
           D++  +  R +  +     ++E        +R  +++ +++L   E+  + LQ+ ++   
Sbjct: 290 DRAAQELSRKKTELLGLQTELETLANQDSDMRQHLDKLKEDLTRAEQEKAILQTEVDALR 349

Query: 215 EELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVR 274
            ELE K     +   S+   + +      E+E  +    +   +L + ++K+E+LQ   R
Sbjct: 350 YELERKHNTLTKKTASLQAAQEEKATYAGEIEDMRDRYEKTERKLRVLQKKIENLQETFR 409

Query: 275 LRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQE 334
            +E  L  ++E+L      ++   N     E+    + +      +    +++  +  QE
Sbjct: 410 RKERRLKEEKERL----RSLQTDTNTDTALEKLEKALAEKERIIERLKEQRDRDERYEQE 465

Query: 335 SLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDL 394
             E  + EFE+ + E+ +++  + +   +LEL K+ +  + ++  +   + E   +EL+ 
Sbjct: 466 EFETYKKEFEDLKEEVQNLQLKLSERELQLELLKEEVSKLASNQLKQRSDLERAHIELEK 525

Query: 395 IQTMAIGYLKQLKEKEKQ 412
           I+       K+LK     
Sbjct: 526 IREKHEKLEKELKRLRAN 543

This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains. Length = 774

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 47.8 bits (114), Expect = 3e-05
 Identities = 59/227 (25%), Positives = 109/227 (48%), Gaps = 12/227 (5%)

Query: 263 EEKLESLQRIVRLRENELDSKEEKLDA---MKEEMKKYFNDIELKEREFNGIRKCIEKRS 319
           E   ++L  +++  +  ++  E+ +     ++E +K+   ++E   RE N I   + +  
Sbjct: 161 ENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELR 220

Query: 320 QELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAA 379
           +EL   EK++K     LE  + E EE E EL S+E        +LE K + L        
Sbjct: 221 EELEKLEKEVK----ELEELKEEIEELEKELESLEGSK----RKLEEKIRELEERIEELK 272

Query: 380 ELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVK 439
           +  +E E    EL  ++  A  Y+K L E  +++      +++R   LE +    EER+K
Sbjct: 273 KEIEELEEKVKELKELKEKAEEYIK-LSEFYEEYLDELREIEKRLSRLEEEINGIEERIK 331

Query: 440 EFELREKEIESIRKAVEDRSKNLELKEKKLSNNLHLQVKIEQPESLK 486
           E E +E+ +E ++K +++  K LE  E++       + K E+ E LK
Sbjct: 332 ELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLK 378

Length = 880

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 47.7 bits (114), Expect = 3e-05
 Identities = 78/434 (17%), Positives = 181/434 (41%), Gaps = 62/434 (14%)

Query: 64  DSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLK- 122
           D+    ++ R +E+E ++ +L     R++EC        ++ E +R+   + E   +   
Sbjct: 306 DADAEAVEARREELEDRDEEL---RDRLEECRVAAQAHNEEAESLREDADDLEERAEELR 362

Query: 123 ------EGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQI- 175
                 E EL   +++VE+  E+++   +E+  + +    + VD    E+ +++  E+  
Sbjct: 363 EEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERD 422

Query: 176 ELKEK------DLRKIRSSIEECEKEL-----------VMKEKHASSLQSLIEDYAEELE 218
           EL+E+       LR  R  +EE E  L           V    H  +    IE+  E +E
Sbjct: 423 ELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVET----IEEDRERVE 478

Query: 219 SKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLREN 278
             E   +++++ + + E +L+            ++E    +   EE+ E L+ ++  R  
Sbjct: 479 ELEAELEDLEEEVEEVEERLE--------RAEDLVEAEDRIERLEERREDLEELIAERRE 530

Query: 279 ELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEG 338
            ++ K E+ + ++E   +   + E K        +  E+  +E+     +L  ++E +E 
Sbjct: 531 TIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIES 590

Query: 339 CRN------EFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELEL 392
                       + E+E+  + +  +  +E  + +++ L        EL  E +   +E 
Sbjct: 591 LERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIE- 649

Query: 393 DLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIR 452
                       + +E +++     E ++E+  +L  +    +  +   E   +E+E +R
Sbjct: 650 ------------EAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELR 697

Query: 453 ---KAVEDRSKNLE 463
              +A+E+R + LE
Sbjct: 698 ERREALENRVEALE 711

Length = 880

>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional

 Score = 48.0 bits (114), Expect = 3e-05
 Identities = 89/558 (15%), Positives = 210/558 (37%), Gaps = 61/558 (10%)

Query: 5   DNNKEELRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDAD 64
           +N K+++   E    I  +  +    + N+ ++    + +L+  L+  + SLE   N  +
Sbjct: 200 ENIKKQIADDEKSHSITLKEIERLSIEYNNAMD---DYNNLKSALN-ELSSLEDMKNRYE 255

Query: 65  SKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEG 124
           S+I+  +        K +     E R  +   +   K       R  I +   + +    
Sbjct: 256 SEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKN------RNYIND-YFKYKNDIE 308

Query: 125 ELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKE----- 179
               +  +++  + K    +K++ +++K  +  +  + R ++L     + +EL+      
Sbjct: 309 NKKQILSNIDAEINKYHAIIKKLSVLQKDYNDYIKKKSRYDDLNN---QILELEGYEMDY 365

Query: 180 ----KDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCE 235
               K +  ++  IEE  K +       S +  + E   + ++ +    +EI   +    
Sbjct: 366 NSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKE---LNEINVKLQDIS 422

Query: 236 TKLDCKKKELELTQTSIIELSLEL--------------HLEEEKLESLQRIVRLRENELD 281
           +K+    + +   + ++ ELS  +               L EEK      I+     +  
Sbjct: 423 SKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLGEEKSN---HIINHYNEKKS 479

Query: 282 SKEEKLDAMKEEMKKYFNDI-ELKEREFNGIRKCIEKRSQE---LTLKEKQLKCVQESLE 337
             EEK+  ++ E+K     I +LK+R+     + I K   E   +      L+ ++  + 
Sbjct: 480 RLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKIN 539

Query: 338 GCRNEFEEKENELISVEKLIDKCSEELELKK----KHLCVIENSAAELSDECESNELELD 393
             + +  +K  E+ +  K +    E+L+ K+      L VI         + E+N    +
Sbjct: 540 ELK-DKHDKYEEIKNRYKSLK--LEDLDSKRTSWLNALAVISLI------DIETNRSRSN 590

Query: 394 LIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIRK 453
            I+        +L+E E  F   K  +D+  +++E +      +  E +  +  IE +R 
Sbjct: 591 EIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRG 650

Query: 454 AVEDRSKNLELKEKKLSNNLHLQVKIEQPESLKGNEGTKQLSLQSCTMITGKNLQLLLNQ 513
            +++  K +   +  + +   +  +I   E     +  K L          ++   +L  
Sbjct: 651 KIDNYKKQIAEIDSIIPDLKEITSRINDIED-NLKKSRKALDDAKANRARLESTIEILRT 709

Query: 514 HLQKHDLVFGEISHTLTK 531
            + +      +I+ TL  
Sbjct: 710 RINELSDRINDINETLES 727

Length = 895

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 47.7 bits (113), Expect = 4e-05
 Identities = 64/289 (22%), Positives = 126/289 (43%), Gaps = 12/289 (4%)

Query: 44  DLEEHLDISMKSLEKQSNDA--DSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACK 101
              E L +    L++Q+  A    +++   +  +E       L L E RI      L  +
Sbjct: 191 IDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDE 250

Query: 102 EKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQ 161
           ++++E  ++ + + E  L     E    +K  +   E+L L  KE   ++    K    +
Sbjct: 251 QEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRK 310

Query: 162 RRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKE 221
              E  +K+  ++++  EK+L+K +  IEE EKE          L+ L      E E +E
Sbjct: 311 VDDEEKLKESEKELKKLEKELKKEKEEIEELEKE----------LKELEIKREAEEEEEE 360

Query: 222 KLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELD 281
           +L    +K     E  L  KK E E   ++      EL L+ E+ +  + ++ L E E D
Sbjct: 361 QLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLELSEQEED 420

Query: 282 SKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLK 330
             +E+     + +++    +E K+ +    ++ +EK++ +L   + +LK
Sbjct: 421 LLKEEKKEELKIVEELEESLETKQGKLTEEKEELEKQALKLLKDKLELK 469

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 47.0 bits (112), Expect = 6e-05
 Identities = 58/293 (19%), Positives = 119/293 (40%), Gaps = 36/293 (12%)

Query: 41  QWKDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESK---------------ESDLV 85
           Q   LEE L+   + + +     +   +LL++  K+I+                 E+++ 
Sbjct: 245 QLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIA 304

Query: 86  LAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLE------- 138
             ER I E   EL   E++L  +   I +   E++  E E+   +K  ++  E       
Sbjct: 305 SLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKE 364

Query: 139 KLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVM 198
           +L+    E+  V+K   ++  + +     ++    +I   +++L +++  ++   +EL  
Sbjct: 365 ELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEEL-- 422

Query: 199 KEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLE 258
                +++  +     E  E KE    EIKK     E KL+    +L   +  + +L  E
Sbjct: 423 -ADLNAAIAGIEAKINELEEEKEDKALEIKKQ----EWKLEQLAADLSKYEQELYDLKEE 477

Query: 259 LHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGI 311
               E++L  LQR       EL   E +  A +E ++      E+ +    G+
Sbjct: 478 YDRVEKELSKLQR-------ELAEAEAQARASEERVRGGRAVEEVLKASIQGV 523

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein

 Score = 46.5 bits (110), Expect = 7e-05
 Identities = 62/283 (21%), Positives = 116/283 (40%), Gaps = 24/283 (8%)

Query: 205 SLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEE 264
             +S +     EL  KE    E K++ I+ E K     +  E      +EL + L   EE
Sbjct: 65  RSKSKLIQLENELMQKEL---EHKRAQIELERKASTLAENYERELDRNLELEVRLKALEE 121

Query: 265 KLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTL 324
             +  +      E E    ++KLDA      K  N+ E + +E       I+    E+  
Sbjct: 122 LEKKAENEAAEAEEEAKLLKDKLDAES---LKLQNEKEDQLKEAKESISRIKNDLSEMQC 178

Query: 325 K----EKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAE 380
           +    + +LK ++  LE  R + EE + EL   EK +   + E      +          
Sbjct: 179 RAQNADTELKLLESELEELREQLEECQKELAEAEKKLQSLTSEQASSADN----SVKIKH 234

Query: 381 LSDECESNELELDLIQTMAIGYLK--QLKEKEKQFHSLKEALDERWQDLEIKERKFEERV 438
           L +E +  E + +++++M    L+  +L+ +          L    +D E+     +E +
Sbjct: 235 LEEELKRYEQDAEVVKSMKEQLLQIPELERELAALREENRKLRSMKEDNEL----LKEEL 290

Query: 439 KEFELREKEIESIRKAVEDRSKNLELKEKKLSNNLHLQVKIEQ 481
           ++ + R +  E +R+ + D    LEL+++KL N L     + Q
Sbjct: 291 EDLQSRLERFEKMREKLAD----LELEKEKLENELKSWKSLLQ 329

This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated. Length = 722

>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC

 Score = 46.1 bits (109), Expect = 1e-04
 Identities = 72/497 (14%), Positives = 168/497 (33%), Gaps = 55/497 (11%)

Query: 8   KEELRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKI 67
            ++L+    + +IL+R       +  ++   T  ++DL+  L  + K  E Q   A+   
Sbjct: 392 TQKLQSLCKELDILQR-------EQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCA 444

Query: 68  RLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELN 127
             +   A+  + ++  L  + + +KE   +L  KE+      ++       L   + E  
Sbjct: 445 AAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPC 504

Query: 128 LVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRS 187
            +  S        +   +++              RR++             E+   ++ +
Sbjct: 505 PLCGSCIH----PNPARQDIDNPG-------PLTRRMQRG-----------EQTYAQLET 542

Query: 188 SIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELEL 247
           S E+   +L  + K  +SL+  +++  +      +  +  K+ I   +      +   E 
Sbjct: 543 SEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEK 602

Query: 248 TQTSIIELSLELHLEEEKLESLQRIVRLRENE----------------------LDSKEE 285
              +   L+ E H    KL+  Q +  +R +                        +   E
Sbjct: 603 LSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVRE 662

Query: 286 KLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEE 345
              +++   K+     +L  ++    ++ +    + L   +  L+ ++  +E    EF E
Sbjct: 663 HALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNE 722

Query: 346 KENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQ 405
            EN   S   L    +   +   + L  + + A  +           +   T A+    +
Sbjct: 723 IENASSS---LGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAE 779

Query: 406 LKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFEL-REKEIESIRKAVEDRSKNLEL 464
           L     +        +E    L+  E +  + +   E     + E++ +  E     LE 
Sbjct: 780 LSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEE 839

Query: 465 KEKKLSNNLHLQVKIEQ 481
           K   L    H  +K E+
Sbjct: 840 KSATLGEITHQLLKYEE 856

All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 45.8 bits (108), Expect = 1e-04
 Identities = 32/208 (15%), Positives = 89/208 (42%), Gaps = 4/208 (1%)

Query: 174 QIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQ 233
           Q++     LR +R+ +   + E    E    + +S ++   +E E+  +     ++++ +
Sbjct: 75  QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAK 134

Query: 234 CETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEE 293
            + +L    K+ +  QT +  L+ +    E + +SLQ      + +L +   +L +   +
Sbjct: 135 AQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQA----SQKQLQASATQLKSQVLD 190

Query: 294 MKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISV 353
           +K     IE + +         + R++EL  +    +   ++++    +  +K  ++ + 
Sbjct: 191 LKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAAR 250

Query: 354 EKLIDKCSEELELKKKHLCVIENSAAEL 381
            + I +   +L+  +     +E   A+L
Sbjct: 251 AEQIRERERQLQRLETAQARLEQEVAQL 278

Length = 499

>gnl|CDD|129694 TIGR00606, rad50, rad50

 Score = 45.4 bits (107), Expect = 2e-04
 Identities = 54/260 (20%), Positives = 106/260 (40%), Gaps = 16/260 (6%)

Query: 213 YAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRI 272
           Y + LE+  ++     + + + + +     K L+  +    E+  ++  +E +LES + I
Sbjct: 184 YIKALETLRQVRQTQGQKVQEHQME----LKYLKQYKEKACEIRDQITSKEAQLESSREI 239

Query: 273 VRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCV 332
           V+  ENELD  + +L  + E        ++ + +     +K +EK + E  L+ K  K  
Sbjct: 240 VKSYENELDPLKNRLKEI-EHNLSKIMKLDNEIKALKSRKKQMEKDNSE--LELKMEKVF 296

Query: 333 QESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELEL 392
           Q + E   + +   +  +   E+ +  C  ELE   K   ++     EL  E    +L+ 
Sbjct: 297 QGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQA 356

Query: 393 DLIQTMAIGYLKQLKEKEKQFHSLKEALD--ERWQDLEIKERKFEERVKEFELREKEIES 450
           D  Q           +   Q  + +  LD  ER    E + + F   V E +  E E ++
Sbjct: 357 DRHQEHIRAR-----DSLIQSLATRLELDGFERGPFSERQIKNFHTLVIERQ--EDEAKT 409

Query: 451 IRKAVEDRSKNLELKEKKLS 470
             +   D      LK+++  
Sbjct: 410 AAQLCADLQSKERLKQEQAD 429

All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 1311

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 44.7 bits (106), Expect = 2e-04
 Identities = 37/207 (17%), Positives = 78/207 (37%), Gaps = 21/207 (10%)

Query: 179 EKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKL 238
           +K L++I+  I   EK++  ++   + L+  ++    E+ S       ++  +I+    L
Sbjct: 37  DKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIAS-------LEAQLIETADDL 89

Query: 239 DCKKKELELTQTSIIELSLELHLEEEKL-ESLQRIVRLRENE----LDSKEEKLD----- 288
              +K++      +  L ++   +  +L E L  + R   N     L S E+        
Sbjct: 90  KKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLA 149

Query: 289 ----AMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFE 344
               A+     +  + ++   ++   +R  I     ELT    + +  Q  L     E +
Sbjct: 150 IYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERK 209

Query: 345 EKENELISVEKLIDKCSEELELKKKHL 371
           +   +L S      K  EEL   +  L
Sbjct: 210 KTLAQLNSELSADQKKLEELRANESRL 236

Length = 420

>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein

 Score = 44.5 bits (105), Expect = 3e-04
 Identities = 100/472 (21%), Positives = 192/472 (40%), Gaps = 48/472 (10%)

Query: 55  SLEKQSNDADSKIRLLDQRAKEIESK------ESDLVLAERRIKECNFEL---------- 98
           SL+KQ  ++      L QRA+ I SK      E++L+  E   K    EL          
Sbjct: 46  SLQKQVEES----MTLLQRAELIRSKSKLIQLENELMQKELEHKRAQIELERKASTLAEN 101

Query: 99  ----ACKEKQLELVRKRIGECECELQLK----EGELNLVKKSVEEWLEKLDLKMKEVGLV 150
                 +  +LE+  K + E E + + +    E E  L+K  ++    KL  + ++    
Sbjct: 102 YERELDRNLELEVRLKALEELEKKAENEAAEAEEEAKLLKDKLDAESLKLQNEKEDQLKE 161

Query: 151 EKSNDKSLVDQ-RRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSL 209
            K +   + +    ++   ++   +++L E +L ++R  +EEC+KEL   EK   SL S 
Sbjct: 162 AKESISRIKNDLSEMQCRAQNADTELKLLESELEELREQLEECQKELAEAEKKLQSLTSE 221

Query: 210 IEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLE-LHLEEEKLES 268
               A+     + L +E+K+     +     K  + +L Q   +E  L  L  E  KL S
Sbjct: 222 QASSADNSVKIKHLEEELKR---YEQDAEVVKSMKEQLLQIPELERELAALREENRKLRS 278

Query: 269 LQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELK----EREFNGIRKCIEKRSQELTL 324
           ++    L + EL+  + +L+   E+M++   D+EL+    E E    +  ++     L  
Sbjct: 279 MKEDNELLKEELEDLQSRLE-RFEKMREKLADLELEKEKLENELKSWKSLLQDIGLNLRT 337

Query: 325 KE---KQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAEL 381
            +   +++  +Q      + +     +    +E  + +   E +     +  ++     L
Sbjct: 338 PDDLSRRIVVLQNEELQLKEKNGSISSSAKQLETTLQQLQLERQKAVSEILELKKKLEAL 397

Query: 382 SDECESNELELDLIQTMAIGYLKQLKE--KEKQFHSLKEALDERWQDLEIKERKFEERVK 439
                  +  L L+     G    L    KE    S+   L +R ++ E   +K +  + 
Sbjct: 398 KALVRRLQRRLTLVTKERDGLRAILNSYDKELTETSVSGQLMKRLEEAEDLVQKVQSHLA 457

Query: 440 EFELREKEIESIRKAVEDRSKNLE-----LKEKKLSNNLHLQVKIEQPESLK 486
           + E +  E+E      +DR+  LE     LKE+ +SN   L    E   +L+
Sbjct: 458 KMENQLSELEEDVGQQKDRNNTLETEIKLLKEQLVSNERLLSFVKEATNALR 509

This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated. Length = 722

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 44.4 bits (106), Expect = 3e-04
 Identities = 31/113 (27%), Positives = 59/113 (52%), Gaps = 8/113 (7%)

Query: 218 ESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRE 277
           E+K K  +E  K I++     + KK+   + + +++E   E+H    + E   + +R R 
Sbjct: 30  EAKIKEAEEEAKRILE-----EAKKEAEAIKKEALLEAKEEIHKLRNEFE---KELRERR 81

Query: 278 NELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLK 330
           NEL   E++L   +E + +    +E +E E     K +E++ QEL  KE++L+
Sbjct: 82  NELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELE 134

Length = 520

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 44.1 bits (105), Expect = 4e-04
 Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 8/136 (5%)

Query: 281 DSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCR 340
             K+E L   KEE+ K   ++E   RE    R  +++  + L  +E+ L    ESL+   
Sbjct: 47  TLKKEALLEAKEEVHKLRAELE---RELKERRNELQRLERRLLQREETLDRKMESLDKKE 103

Query: 341 NEFEEKENELISVEKLIDKCSEELE-LKKKHLCVIENSAAELSDECES---NELELDLIQ 396
              E+KE EL + EK +D+  EELE L  +    +E  +    +E +     E+E +   
Sbjct: 104 ENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKEILLEEVEEEARH 163

Query: 397 TMAIGYLKQLKEKEKQ 412
             A   +K+++E+ K+
Sbjct: 164 EAAK-LIKEIEEEAKE 178

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 43.8 bits (103), Expect = 5e-04
 Identities = 91/514 (17%), Positives = 179/514 (34%), Gaps = 20/514 (3%)

Query: 8   KEELRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLD--ISMKSLEKQSNDADS 65
            E L       E L+        QA   L +    + LE   +  + +  L+      D 
Sbjct: 183 TENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDL 242

Query: 66  KIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGE 125
              LL    +EIES + +L   E  + +   E   +EK+ +L  + +     E +  + E
Sbjct: 243 LQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSE 302

Query: 126 LNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKI 185
           L  +++   +  EKL    KE+  +EK   K   +   LE            KE    +I
Sbjct: 303 LLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELE------------KELKELEI 350

Query: 186 RSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKEL 245
           +   EE E+E  +++      Q   E  A     K+   + +  +    E +L+ K +E 
Sbjct: 351 KREAEEEEEEQ-LEKLQEKLEQLEEELLA----KKKLESERLSSAAKLKEEELELKNEEE 405

Query: 246 ELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKE 305
           +  +  +     E  L +E+ +   +IV   E  L++K+ KL   KEE++K    +   +
Sbjct: 406 KEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEELEKQALKLLKDK 465

Query: 306 REFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELE 365
            E       + K ++ + L E+    +        ++ E K  E ++V   + K    L 
Sbjct: 466 LELKKSED-LLKETKLVKLLEQLELLLLRQKLEEASQKESKAREGLAVLLALIKDGVGLR 524

Query: 366 LKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQ 425
           +        +   A  + +   +   +  +  +A    ++ K           A      
Sbjct: 525 IISAAGRGGDLGVAVANYKVAISVAVIVEVSAVADEVDERQKLVRALTELPLPARTFVLL 584

Query: 426 DLEIKERKFEERVKEFELREKEIESIRKAVEDRSKNLELKEKKLSNNLHLQVKIEQPESL 485
           D  +K       V E +      +  +  +E    +   K  +         K+ +    
Sbjct: 585 DPLLKLPLKSIAVLEIDPALNLAQLNKATLEADEDDKRAKVVEGILKDTELTKLLESAKA 644

Query: 486 KGNEGTKQLSLQSCTMITGKNLQLLLNQHLQKHD 519
           K +   K +SL+       +    L     +   
Sbjct: 645 KESGLRKGVSLEEGLAEKSELKASLSELTKELLA 678

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein

 Score = 43.8 bits (103), Expect = 5e-04
 Identities = 85/456 (18%), Positives = 183/456 (40%), Gaps = 56/456 (12%)

Query: 44  DLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESK--ESDLVLA---ERRIKECNFEL 98
           D    L++ +K+LE+    A+++    ++ AK ++ K     L L    E ++KE    +
Sbjct: 107 DRNLELEVRLKALEELEKKAENEAAEAEEEAKLLKDKLDAESLKLQNEKEDQLKEAKESI 166

Query: 99  ACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKL---DLKMKEVGLVEKSND 155
           +  +  L  ++ R    + EL+L E EL  +++ +EE  ++L   + K++ +   + S+ 
Sbjct: 167 SRIKNDLSEMQCRAQNADTELKLLESELEELREQLEECQKELAEAEKKLQSLTSEQASSA 226

Query: 156 KSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYA- 214
            + V  + LE  +K + +  E+  K +++    I E E+EL    +    L+S+ ED   
Sbjct: 227 DNSVKIKHLEEELKRYEQDAEV-VKSMKEQLLQIPELERELAALREENRKLRSMKEDNEL 285

Query: 215 -----EELESKEKLYDEIKKSIIQCETKLDCKKKELE----LTQTSIIELSLELHLEEEK 265
                E+L+S+ + ++++++ +   E + +  + EL+    L Q   + L     L    
Sbjct: 286 LKEELEDLQSRLERFEKMREKLADLELEKEKLENELKSWKSLLQDIGLNLRTPDDLSRRI 345

Query: 266 LESLQRIVRLRE--NELDSK----EEKLDAMKEEMKKY---FNDIELKEREFNGIRKCIE 316
           +      ++L+E    + S     E  L  ++ E +K      +++ K      + + ++
Sbjct: 346 VVLQNEELQLKEKNGSISSSAKQLETTLQQLQLERQKAVSEILELKKKLEALKALVRRLQ 405

Query: 317 KRSQELTLKEKQLKCVQESLEGCRNEFEEK---ENELISVEKLIDKCSEELELKKKHLCV 373
           +R   +T +   L+ +  S +    E          L   E L+ K    L   +  L  
Sbjct: 406 RRLTLVTKERDGLRAILNSYDKELTETSVSGQLMKRLEEAEDLVQKVQSHLAKMENQLSE 465

Query: 374 IENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERK 433
           +E    +  D   +            I  LK+     ++  S  +               
Sbjct: 466 LEEDVGQQKDRNNT--------LETEIKLLKEQLVSNERLLSFVK--------------- 502

Query: 434 FEERVKEFELREKEIESIRKAVEDRSKNLELKEKKL 469
             E      L+ + +E  R  +      LE+K + L
Sbjct: 503 --EATNALRLKIETLERERDRLRQEKSLLEMKLEHL 536

This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated. Length = 722

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 43.6 bits (104), Expect = 5e-04
 Identities = 42/142 (29%), Positives = 73/142 (51%), Gaps = 29/142 (20%)

Query: 173 EQIELK---EKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKK 229
           E  +L+   EK+LR+ R+ +++ EK L+ KE++      L+E   EELE KEK  ++ ++
Sbjct: 65  EIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQ 124

Query: 230 SIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDA 289
            + +       K++ELE              L EE+L+ L+RI  L   E  +KE  L+ 
Sbjct: 125 ELEK-------KEEELE-------------ELIEEQLQELERISGLTAEE--AKEILLEK 162

Query: 290 MKEEMK----KYFNDIELKERE 307
           ++EE +        +IE + +E
Sbjct: 163 VEEEARHEAAVLIKEIEEEAKE 184

Length = 520

>gnl|CDD|221952 pfam13166, AAA_13, AAA domain

 Score = 43.5 bits (103), Expect = 6e-04
 Identities = 78/411 (18%), Positives = 168/411 (40%), Gaps = 60/411 (14%)

Query: 75  KEIESKESDLVLAERRIKECNFELACKEKQLE----LVRKRIGECECELQLKEGELNLVK 130
            +IE  + +L   E +I++   E+  KE++LE        +  +   +         L  
Sbjct: 95  AQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSNLSEALKG 154

Query: 131 KSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIE 190
            + ++  ++  LK  +  ++  S+  SL + +     +             L       +
Sbjct: 155 LNYKKNFKEKLLKELKSVILNASSLLSLEELKAKIKTLFS--SNKPELAL-LTLSVIDFD 211

Query: 191 ECEKELVMKEKHASSLQSLIEDYAEELESKE------KLYDEIKKSIIQCETKLDCKKKE 244
           E E+  ++++    S    I +    L + +      + ++E       C     C++  
Sbjct: 212 EIEQAEILEKSIIGSSDVPISELINNLGNSDWVKEGLEYHEEGD----TCPF---CQQ-- 262

Query: 245 LELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELK 304
             +T+    E  LE H +EE  E ++++    E  +D  E  ++   EE++   +     
Sbjct: 263 -TITEERKAE--LEAHFDEEYQELIEQL----EELIDKYESHIEKALEELESILDT---- 311

Query: 305 EREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKEN-----ELISVEKLIDK 359
           E+E +  +  +E+    L   E+ L+   + LE      E+ ++     EL S+  LI+ 
Sbjct: 312 EKENSEFKLDVEELKALLEALEEILEKNLQKLE------EKLKDPSTSIELESITDLIES 365

Query: 360 CSEEL----ELKKKHLCVIENSAAELSDECESNELELDLIQTMAI---GYLKQLKEKEKQ 412
            ++ +    EL ++H   I+N   E +      +L L L+  +      Y K+ K  EK 
Sbjct: 366 INDIIDAINELIREHNEKIDNLKKEKNKAK--KKLWLHLVAELKEDIDAYQKEKKGLEKA 423

Query: 413 FHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIRKAVEDRSKNLE 463
            +SL++ +      LE + +  E+ +KE    EK++ +I    ++ +K L+
Sbjct: 424 INSLEKEIK----QLEAEIKALEKEIKEL---EKQLTNIEPTADEINKLLK 467

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease. Length = 713

>gnl|CDD|129694 TIGR00606, rad50, rad50

 Score = 43.1 bits (101), Expect = 8e-04
 Identities = 112/556 (20%), Positives = 216/556 (38%), Gaps = 83/556 (14%)

Query: 12  RLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKIRLLD 71
           R+ E  +E+ +   +L+ A+ NS          L E L   +KSL+ +  D D K+R LD
Sbjct: 472 RILELDQELRKAERELSKAEKNS----------LTETLKKEVKSLQNEKADLDRKLRKLD 521

Query: 72  QRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKK 131
           Q  +++    +     E   K+       K  + E +RK       EL    G     KK
Sbjct: 522 QEMEQLNHHTTTRTQMEMLTKD-------KMDKDEQIRKIKSRHSDELTSLLGYFPN-KK 573

Query: 132 SVEEWLEKL--DLKMKEVGL--VEKSNDKSLVDQRRLENLIKDFCEQI------------ 175
            +E+WL     ++      L  + K       ++  + N ++   EQ+            
Sbjct: 574 QLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCG 633

Query: 176 -ELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYD-------EI 227
            + +E DL +++  IE+  K+  M     +     I    +E +S   +         E+
Sbjct: 634 SQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAEL 693

Query: 228 KKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKL 287
           ++ I   ++KL     +L+ T++ + +               Q I+ L+E E+     KL
Sbjct: 694 QEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKL 753

Query: 288 DAMKEEMKKYFNDIELKEREFNGIRK-------------CIEKRSQELTLKEKQLKCVQE 334
             +  ++++  NDIE +E     I                +E+   EL   E+++     
Sbjct: 754 QKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAA 813

Query: 335 SLEGC---------RNEFEEKENELISVEKLID---KCSEELELKKKHLCVIENSAAELS 382
            L+G            E +EK++EL +V   I+   K  ++ + + +HL          +
Sbjct: 814 KLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL-------KSKT 866

Query: 383 DECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEAL-DERWQDLEIKERKFEERVKEF 441
           +E +S +L++         + +QL E   +  SL   + D + QD  ++    +++ ++ 
Sbjct: 867 NELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKE 926

Query: 442 ELREKEIESIRKAVEDRSKNLELKEKKLSNNLHLQVKIEQPESLKGNEGTKQLSLQSCTM 501
           EL   +  S +KA       +   ++K+ N       IE     K  +G      Q  T 
Sbjct: 927 ELISSKETSNKKA----QDKVNDIKEKVKNIHGYMKDIEN----KIQDGKDDYLKQKETE 978

Query: 502 ITGKNLQLLLNQHLQK 517
           +   N QL   +  Q+
Sbjct: 979 LNTVNAQLEECEKHQE 994

All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 1311

>gnl|CDD|223683 COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]

 Score = 43.2 bits (102), Expect = 8e-04
 Identities = 57/325 (17%), Positives = 114/325 (35%), Gaps = 44/325 (13%)

Query: 132 SVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEE 191
           ++EE +EKL+  + E     +           L +   +   ++E   K L K       
Sbjct: 678 AIEELVEKLEDVLNEFKEQSEDIGYLEDAGELLRDFAPELEIKVERGNKILAK------- 730

Query: 192 CEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTS 251
                    K  ++L+ L E      E  + L D +K  + +     D + K L+L    
Sbjct: 731 ---LFGRFLKAFNALKKLYEFAYTLEEEIQYLEDLLKARLEK-----DYQSKYLDLID-- 780

Query: 252 IIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGI 311
            +  + E+  +E K   L  I    E EL  K+E      + + +       K   +  +
Sbjct: 781 NLNDAREIKDKESKAIDLDDIDF--ELELIGKQEIN---IDYILELLQTFNDKNGAYESL 835

Query: 312 RKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHL 371
           ++ IE+  +E     +Q K + E L    N++  K+ +           + E   +   L
Sbjct: 836 KELIERIIKEWIEDLRQKKKLIERLIEAINQYRAKKLD-----------TAEKLEELYIL 884

Query: 372 CVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKE 431
              E    + ++E   NE EL     +    L   K  E     ++         L  ++
Sbjct: 885 AKKEEEFKQFAEEEGLNEEELAFYDDL---ALNGGKLPENGTELVE--------KLAKEK 933

Query: 432 RKFEERVKEFELREKEIESIRKAVE 456
              E+   +++ +E+    ++    
Sbjct: 934 SLREKNKDDWKAKEEVEAKLKAFFR 958

Length = 962

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 42.3 bits (100), Expect = 0.001
 Identities = 57/307 (18%), Positives = 117/307 (38%), Gaps = 41/307 (13%)

Query: 173 EQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSII 232
           E++E  E ++  +R +I E E+E               E+ AEE+    +  +E+     
Sbjct: 251 EELETLEAEIEDLRETIAETERER--------------EELAEEVRDLRERLEEL----- 291

Query: 233 QCETKLDCKKKELELTQTSIIELSLELH-LEEEKLESLQRIVRLR------ENELDSKEE 285
             E + D    E  L       +      LE+   E   R+   R        E +S  E
Sbjct: 292 --EEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLRE 349

Query: 286 KLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEE 345
             D ++E  ++   +    E E    R+ +E R +E+   E++++ ++E       +   
Sbjct: 350 DADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGN 409

Query: 346 KENELISVEKLIDKCSEELELKKKHLCVIENS---AAELSDECESNELELDLIQTMAIGY 402
            E+ L  + +  D+  E     +  L         A  L +  +  E    +  +    +
Sbjct: 410 AEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGS---PH 466

Query: 403 LKQLKEKEKQFHSLKEALDERWQDLEIKERKFE---ERVKEFELREKEIESIRKAVEDRS 459
           ++ ++E  ++     E L+   +DLE +  + E   ER ++    E  IE + +  ED  
Sbjct: 467 VETIEEDRER----VEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLE 522

Query: 460 KNLELKE 466
           + +  + 
Sbjct: 523 ELIAERR 529

Length = 880

>gnl|CDD|223542 COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

 Score = 41.4 bits (98), Expect = 0.003
 Identities = 66/269 (24%), Positives = 118/269 (43%), Gaps = 53/269 (19%)

Query: 186 RSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKEL 245
           R  I +   E   +E   + ++ L ++  +E    E L   I     +   KL+ K    
Sbjct: 97  RVRISKLSDE---EEFFEAEIELLPDEPIDEEREIEALVRSILSEFEEYA-KLNKKIPPE 152

Query: 246 ELTQTSIIELSLEL------HLEEEKLESLQRIVRLRENELDSKEEK-LDAMKEEMKKYF 298
           EL   + I+   +L      HL   KLE  Q I  L   ++  + EK LD +++E+    
Sbjct: 153 ELQSLNSIDDPGKLADTIAAHLPL-KLEEKQEI--LETLDVKERLEKLLDLLEKEI---- 205

Query: 299 NDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLID 358
           + ++L++R    +++ +EK  +E  L+E QLK +Q+ L     E ++ ++E+  + + I+
Sbjct: 206 DLLQLEKRIRKKVKEQMEKSQREYYLRE-QLKAIQKEL----GEDDDDKDEVEELREKIE 260

Query: 359 KCSEELELKKK------HLCVIENSAAELSDECESNELELDLIQTMAIGYLKQL-----K 407
           K     E K+K       L  +   +AE +           +I+     YL  L      
Sbjct: 261 KLKLPKEAKEKAEKELKKLETMSPMSAEAT-----------VIRN----YLDWLLDLPWG 305

Query: 408 EKEKQFHSLKEA---LDERWQDLE-IKER 432
           ++ K    LK+A   LD+    LE +KER
Sbjct: 306 KRSKDKLDLKKAEKILDKDHYGLEKVKER 334

Length = 782

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 40.9 bits (96), Expect = 0.004
 Identities = 59/258 (22%), Positives = 112/258 (43%), Gaps = 16/258 (6%)

Query: 43  KDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERR---IKECNFELA 99
           ++L E L+      + Q      ++R L+ R +E++    +L L   R   ++E    L 
Sbjct: 539 ENLLEELE--ELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLK 596

Query: 100 CKEKQLELVRKRIGECE-----CELQLKEGELNLVKKSVEEWLEKLDLKM-----KEVGL 149
             +K+L+ + +R+ + E      EL   E EL   ++ +E  LEKL+L+       +  L
Sbjct: 597 ELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAAL 656

Query: 150 VEKSND-KSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQS 208
            E     + L  + R E    +  EQ+E K ++L ++   +E+  +EL    K    ++ 
Sbjct: 657 EELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQ 716

Query: 209 LIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLES 268
           LIE+        E+L  E++K     E   + ++K  +    + I  +L   +E E  E 
Sbjct: 717 LIEELESRKAELEELKKELEKLEKALELLEELREKLGKAGLRADILRNLLAQIEAEANEI 776

Query: 269 LQRIVRLRENELDSKEEK 286
           L ++   R +       K
Sbjct: 777 LSKLSLNRYDLRRLTIRK 794

Length = 908

>gnl|CDD|223683 COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]

 Score = 40.9 bits (96), Expect = 0.004
 Identities = 44/271 (16%), Positives = 95/271 (35%), Gaps = 14/271 (5%)

Query: 43  KDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKE 102
           K+  E +     + E   + A      +++  K +       + A   +K          
Sbjct: 694 KEQSEDIGYLEDAGELLRDFAPELEIKVERGNKILAKLFGRFLKAFNALK--KLYEFAYT 751

Query: 103 KQLELVRKRIGECECELQL-KEGELNLVKKS--VEEWLEKLDLKMKEVGLVE--KSNDKS 157
            + E+            +  +   L+L+       E  +K    +    +    +   K 
Sbjct: 752 LEEEIQYLEDLLKARLEKDYQSKYLDLIDNLNDAREIKDKESKAIDLDDIDFELELIGKQ 811

Query: 158 LVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAE-E 216
            ++   +  L++ F ++    E     I   I+E  ++L  K+K    L   I  Y   +
Sbjct: 812 EINIDYILELLQTFNDKNGAYESLKELIERIIKEWIEDLRQKKKLIERLIEAINQYRAKK 871

Query: 217 LESKEKLYDEIKKSIIQCETKLDCKKKEL-ELTQTSIIELSLELH----LEEEKLESLQR 271
           L++ EKL +    +  + E K   +++ L E       +L+L          E +E L +
Sbjct: 872 LDTAEKLEELYILAKKEEEFKQFAEEEGLNEEELAFYDDLALNGGKLPENGTELVEKLAK 931

Query: 272 IVRLRENELDSKEEKLDAMKEEMKKYFNDIE 302
              LRE   D   +  + ++ ++K +F    
Sbjct: 932 EKSLREKNKDDW-KAKEEVEAKLKAFFRRFI 961

Length = 962

>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton]

 Score = 40.8 bits (96), Expect = 0.004
 Identities = 63/309 (20%), Positives = 109/309 (35%), Gaps = 24/309 (7%)

Query: 175  IELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKS---- 230
            +  KE    +    +E  E++L   +    S+ SL           E    E+KKS    
Sbjct: 863  LLKKETIYLQSAQRVELAERQLQELKIDVKSISSL----KLVNLELESEIIELKKSLSSD 918

Query: 231  -IIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDA 289
             I   E K +   +  +L     +E    +   +              N+L   E KL  
Sbjct: 919  LIENLEFKTELIARLKKLLNNIDLEEGPSIEYVKLP----------ELNKLHEVESKLKE 968

Query: 290  MKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENE 349
              EE +       +  RE N     ++   +EL    KQ   +QES +  + E   +  E
Sbjct: 969  TSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLK-ELPVEVAE 1027

Query: 350  LISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEK 409
            L S  K+I   S EL + K    +      E + + ++    L L +  ++   KQL + 
Sbjct: 1028 LQSASKIISSESTELSILKPLQKLKGLLLLENN-QLQARYKALKLRRENSLLDDKQLYQL 1086

Query: 410  EKQFHSLKE--ALDERWQDLE-IKERKFEERVKEFELREKEIESIRKAVEDRSKNLELKE 466
            E   + LK     D    +   +K     + +    ++   ++ I K +      LE   
Sbjct: 1087 ESTENLLKTINVKDLEVTNRNLVKPANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVF 1146

Query: 467  KKLSNNLHL 475
            +KLS     
Sbjct: 1147 QKLSVLQLE 1155

Length = 1463

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1046
PF07899	290	Frigida: Frigida-like protein; InterPro: IPR012474	100.0
PF07899	290	Frigida: Frigida-like protein; InterPro: IPR012474	100.0
PRK02224	880	chromosome segregation protein; Provisional	99.1
PRK02224	880	chromosome segregation protein; Provisional	98.97
PRK01156	895	chromosome segregation protein; Provisional	98.7
PRK01156	895	chromosome segregation protein; Provisional	98.66
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.61
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.59
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.56
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.55
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.53
PRK03918	880	chromosome segregation protein; Provisional	98.5
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.48
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.4
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.28
KOG0933	1174	consensus Structural maintenance of chromosome pro	98.26
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.21
KOG0996	1293	consensus Structural maintenance of chromosome pro	97.84
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.58
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	97.56
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.47
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	97.46
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	97.45
KOG0933	1174	consensus Structural maintenance of chromosome pro	97.36
KOG0996	1293	consensus Structural maintenance of chromosome pro	97.3
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	97.13
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	97.04
KOG0964	1200	consensus Structural maintenance of chromosome pro	96.95
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	96.91
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	96.9
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	96.87
KOG0971	1243	consensus Microtubule-associated protein dynactin	96.87
PRK11637	428	AmiB activator; Provisional	96.85
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	96.78
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	96.76
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	96.53
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	96.42
PHA02562	562	46 endonuclease subunit; Provisional	96.31
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	96.28
PHA02562	562	46 endonuclease subunit; Provisional	96.24
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	95.51
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	95.45
KOG0018	1141	consensus Structural maintenance of chromosome pro	95.38
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	95.34
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	95.25
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	95.17
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	94.96
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	94.85
KOG0018	1141	consensus Structural maintenance of chromosome pro	94.84
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	94.7
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	94.59
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	93.98
PRK04863	1486	mukB cell division protein MukB; Provisional	93.93
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	93.62
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	93.51
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	93.32
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	93.03
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	93.0
COG4372	499	Uncharacterized protein conserved in bacteria with	92.99
KOG0971	1243	consensus Microtubule-associated protein dynactin	92.95
KOG0979	1072	consensus Structural maintenance of chromosome pro	92.63
PRK04778	569	septation ring formation regulator EzrA; Provision	92.57
KOG4673	961	consensus Transcription factor TMF, TATA element m	91.69
KOG0964	1200	consensus Structural maintenance of chromosome pro	91.46
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	90.93
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	90.54
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	90.13
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	89.78
KOG0979	1072	consensus Structural maintenance of chromosome pro	88.74
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	88.64
PRK04863	1486	mukB cell division protein MukB; Provisional	88.47
PF00038	312	Filament: Intermediate filament protein; InterPro:	88.0
PRK12704	520	phosphodiesterase; Provisional	87.6
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	87.4
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	87.39
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	86.88
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	86.21
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	86.09
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	85.69
KOG1003	205	consensus Actin filament-coating protein tropomyos	85.14
COG5185	622	HEC1 Protein involved in chromosome segregation, i	84.71
PF00038	312	Filament: Intermediate filament protein; InterPro:	83.96
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	83.95
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	83.93
PRK09039	343	hypothetical protein; Validated	83.24
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	82.76
PRK00106	535	hypothetical protein; Provisional	82.46
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	81.9
PRK00106	535	hypothetical protein; Provisional	81.72
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	81.07
COG2433	652	Uncharacterized conserved protein [Function unknow	80.54
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	80.42

>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT)

Probab=100.00  E-value=2.6e-72  Score=610.15  Aligned_cols=270  Identities=42%  Similarity=0.672  Sum_probs=250.1

Q ss_pred             hhccccchhhHHHHHHHhhhhhhhhhhhHHHhhhhcCCchhhHHHhhhccCCCCCCCCCccchhhHHHHHhHHHHhhhhh
Q 001601          497 QSCTMITGKNLQLLLNQHLQKHDLVFGEISHTLTKACDPASLVLDAMEGFYPPHSREGDMEFDVSIIRRTCILLLEQLSS  576 (1046)
Q Consensus       497 ~lC~~mDgkgL~~fl~e~~k~~~~lr~Ev~~ALr~a~DPAkLVLDaLEgFy~~~~k~gd~~~d~~~~RrsCilLLE~L~~  576 (1046)
                      ++|++|||+||++|+++|+++..++|+|||+||++|||||+||||+|+|||++..+. +.+.+...+||+||+|||+|+.
T Consensus        17 ~lC~~MD~~gL~~fv~~~~k~~~~lr~Ev~~AL~~A~DPAkLVLdai~~f~~~~~~~-~~~~~~~~~r~~cilLLE~L~~   95 (290)
T PF07899_consen   17 SLCEKMDGKGLRKFVSENRKELASLREEVPAALRCAPDPAKLVLDAIEGFYPPGSKN-KKDSKLVDVRRACILLLEQLMR   95 (290)
T ss_pred             HHHHHCCHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCChHHHHHHHHHcccCCcccc-ccCcchhhHHHHHHHHHHHHhh
Confidence            799999999999999999999999999999999999999999999999999998755 5667788999999999999999


Q ss_pred             cCCCCChhHHHHHHHHHHHHHHhh-hhccCCcHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHhhhhhHHHHHHcCccc
Q 001601          577 VTPEINPQVRDEAMKVAGEWKKKM-RVAEDNSLEVLGFLHLLAAYGLGPSFDGIELESLLDIVAQHRQTSKLRQSLGFAE  655 (1046)
Q Consensus       577 isp~is~~VKeeAkkLA~eWK~kl-~~d~enslEalgFLqLLA~yGL~seFD~dEL~~Lv~~va~~rQapeLcraLGl~e  655 (1046)
                      ++|.|+|+||++|++||.+||++| ..++.|++||+|||||||+|||+++||.|||++||..|++|+|+|+||++|||++
T Consensus        96 ~~~~is~~vke~A~~lA~~WK~~l~~~~~~~~lea~gFL~lla~fgi~s~Fd~del~~Lv~~va~~~~a~~L~~sLgl~~  175 (290)
T PF07899_consen   96 ISPEISPEVKEEAKKLAEEWKSKLDGVNNENSLEALGFLQLLAAFGIVSEFDEDELLKLVVSVARRKQAPELCRSLGLSD  175 (290)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHcCCccccCHHHHHHHHHHhcchHhhHHHHHHcCchh
Confidence            999999999999999999999999 7888999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccchhhhhhhhccccCChhHHHHhhhcCCCchhhHHHHHhhhhccCCCCcchhhhHhHHHHHHhhhhcCCC
Q 001601          656 KAHGLQCSTTREARSCLSLLNKHDLGHNEVLQLLHLAPDPAMFVLDFIQHWKSQGTGFEEDNVKCCILVLEKLKEVLPIM  735 (1046)
Q Consensus       656 Kipg~~~s~~~~~~~~~~l~~~h~~~~~Ev~~AL~~a~DPAkLVLDaieg~~~~~~g~~~~~~rsCilLLE~L~~i~p~i  735 (1046)
                      ||||++          ..|.++                                                          
T Consensus       176 k~~d~V----------~~LI~~----------------------------------------------------------  187 (290)
T PF07899_consen  176 KMPDIV----------EKLIKK----------------------------------------------------------  187 (290)
T ss_pred             hhHHHH----------HHHHHC----------------------------------------------------------
Confidence            999962          111110                                                          


Q ss_pred             ChhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHhHhccccccChHHHHHHHHHhhcccchHHHHHHhCccccchhhh
Q 001601          736 NPRVKGEAMKLAVEWKTKMGVGTLNSLEVLVFLQLLGTFELVASFNRVEIVELLWTISEHKQAPETCRALGFTDIVATIR  815 (1046)
Q Consensus       736 s~~Vke~A~klA~~WK~kl~~~~~~slEalaFLqLLaafGL~seFd~dEL~kLv~~va~rkqapeLcrsLGL~~~idAvr  815 (1046)
                                                                                              +.+|+||+
T Consensus       188 ------------------------------------------------------------------------g~~ieAv~  195 (290)
T PF07899_consen  188 ------------------------------------------------------------------------GKQIEAVR  195 (290)
T ss_pred             ------------------------------------------------------------------------CCccchHH
Confidence                                                                                    12799999


Q ss_pred             HHhhhcccccCCCchhHHHHHHHhhHhh---hhcCCCCchhhhhhhHHHHHHHHHHHHHhhhcccccccchHHHHHHHHH
Q 001601          816 FICAFKLTDIAKPEAIFKQYLDDNISDI---HRKGNNSSDAKVKAMDFEVNALTFLIECFKENKLESSLLIENIKQRIVQ  892 (1046)
Q Consensus       816 fi~af~Lv~kFpPVpLLK~Yl~d~Kk~~---~~kg~ns~~aq~~a~~kEl~aLraVIKcIee~KLEse~p~~~L~kRI~q  892 (1046)
                      |||+|||+++|||||||++||+++|++.   ..+|+++ .++++|+++|++||++|||||++|||||+||+++|++||.|
T Consensus       196 fi~~f~L~dkfpPv~lLk~yl~~~k~~~~~~~~~~~~~-~a~~ea~~kel~aL~~vikcIee~kLes~~~~~~l~kri~~  274 (290)
T PF07899_consen  196 FIYAFGLVDKFPPVPLLKSYLEDSKKAAKRIRKKGNSS-EAQNEANEKELAALKSVIKCIEEHKLESEFPLEPLQKRIEQ  274 (290)
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHHHHHHHHHhccccccChHHHHHHHHH
Confidence            9999999999999999999999999864   3455555 99999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhcccCCCCC
Q 001601          893 LEMAKADCRRHSTPAP  908 (1046)
Q Consensus       893 LEk~ka~kkr~~~~~~  908 (1046)
                      ||++++++||++++++
T Consensus       275 Lek~~~~~kr~~~~~~  290 (290)
T PF07899_consen  275 LEKQKADRKRAAEAAK  290 (290)
T ss_pred             HHHHHHHHhhcccccC
Confidence            9999999999987653

This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].

>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT)

Probab=100.00  E-value=2.9e-36  Score=328.62  Aligned_cols=161  Identities=40%  Similarity=0.575  Sum_probs=150.6

Q ss_pred             CChhHHHHhhhcCCCchhhHHHHHhhhhccCCC-----CcchhhhHhHHHHHHhhhhcCCCChhHHHHHHHHHHHHHhhc
Q 001601          680 LGHNEVLQLLHLAPDPAMFVLDFIQHWKSQGTG-----FEEDNVKCCILVLEKLKEVLPIMNPRVKGEAMKLAVEWKTKM  754 (1046)
Q Consensus       680 ~~~~Ev~~AL~~a~DPAkLVLDaieg~~~~~~g-----~~~~~~rsCilLLE~L~~i~p~is~~Vke~A~klA~~WK~kl  754 (1046)
                      -.++||++||++|||||+||||||+|||+...+     ...++||+||+|||+|+.++|.++|+||++|++||.+||++|
T Consensus        40 ~lr~Ev~~AL~~A~DPAkLVLdai~~f~~~~~~~~~~~~~~~~r~~cilLLE~L~~~~~~is~~vke~A~~lA~~WK~~l  119 (290)
T PF07899_consen   40 SLREEVPAALRCAPDPAKLVLDAIEGFYPPGSKNKKDSKLVDVRRACILLLEQLMRISPEISPEVKEEAKKLAEEWKSKL  119 (290)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHcccCCccccccCcchhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            358999999999999999999999999987653     224568999999999999999999999999999999999999


Q ss_pred             -CCCCCchhHHHHHHHHHhHhccccccChHHHHHHHHHhhcccchHHHHHHhCccc--------cchhhhHHhhhccccc
Q 001601          755 -GVGTLNSLEVLVFLQLLGTFELVASFNRVEIVELLWTISEHKQAPETCRALGFTD--------IVATIRFICAFKLTDI  825 (1046)
Q Consensus       755 -~~~~~~slEalaFLqLLaafGL~seFd~dEL~kLv~~va~rkqapeLcrsLGL~~--------~idAvrfi~af~Lv~k  825 (1046)
                       +.++++++||+||||||++|||+++||.|||++||.+||+|+|||+||++|||++        .|.-+++|.|+.++..
T Consensus       120 ~~~~~~~~lea~gFL~lla~fgi~s~Fd~del~~Lv~~va~~~~a~~L~~sLgl~~k~~d~V~~LI~~g~~ieAv~fi~~  199 (290)
T PF07899_consen  120 DGVNNENSLEALGFLQLLAAFGIVSEFDEDELLKLVVSVARRKQAPELCRSLGLSDKMPDIVEKLIKKGKQIEAVRFIYA  199 (290)
T ss_pred             HhcccCCCHHHHHHHHHHHHcCCccccCHHHHHHHHHHhcchHhhHHHHHHcCchhhhHHHHHHHHHCCCccchHHHHHH
Confidence             8888999999999999999999999999999999999999999999999999999        7889999999999999


Q ss_pred             CCCchhHHHHHHHhhH
Q 001601          826 AKPEAIFKQYLDDNIS  841 (1046)
Q Consensus       826 FpPVpLLK~Yl~d~Kk  841 (1046)
                      |..+.-+.+ +...|.
T Consensus       200 f~L~dkfpP-v~lLk~  214 (290)
T PF07899_consen  200 FGLVDKFPP-VPLLKS  214 (290)
T ss_pred             HcCCCCCCC-HHHHHH
Confidence            999998888 777776

This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].

>PRK02224 chromosome segregation protein; Provisional

Probab=99.10  E-value=2.1e-05  Score=97.99  Aligned_cols=75  Identities=16%  Similarity=0.204  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhh
Q 001601          164 LENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKL  238 (1046)
Q Consensus       164 ~~~~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie~~~kkl  238 (1046)
                      ++..+.++...+.....++..+.+.++...+.+...++.+..+...+.++..+++.-+..+......+...+.++
T Consensus       319 l~~k~~el~~~l~~~~~~l~~~~~~~e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el  393 (880)
T PRK02224        319 LEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEI  393 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555555555555555544444444444444444444444444444444444444444444444433

>PRK02224 chromosome segregation protein; Provisional

Probab=98.97  E-value=0.00052  Score=85.83  Aligned_cols=16  Identities=19%  Similarity=0.148  Sum_probs=5.9

Q ss_pred             HHHHhhhhhHHHHHHH
Q 001601          294 MKKYFNDIELKEREFN  309 (1046)
Q Consensus       294 ~e~~~kel~~Ke~e~~  309 (1046)
                      ++.....++-....+.
T Consensus       525 ~~~~~e~le~~~~~~~  540 (880)
T PRK02224        525 IAERRETIEEKRERAE  540 (880)
T ss_pred             HHHHHHHHHhHHHHHH
Confidence            3333333333333333

>PRK01156 chromosome segregation protein; Provisional

Probab=98.70  E-value=0.0036  Score=78.80  Aligned_cols=10  Identities=20%  Similarity=0.647  Sum_probs=6.2

Q ss_pred             CCCchhhHHH
Q 001601          692 APDPAMFVLD  701 (1046)
Q Consensus       692 a~DPAkLVLD  701 (1046)
                      +.+|.-++||
T Consensus       823 ~~~~~~lilD  832 (895)
T PRK01156        823 NNDKSLLIMD  832 (895)
T ss_pred             ccCCCeEEEe
Confidence            4566666666

>PRK01156 chromosome segregation protein; Provisional

Probab=98.66  E-value=0.0049  Score=77.67  Aligned_cols=6  Identities=0%  Similarity=0.019  Sum_probs=2.2

Q ss_pred             HHHHHH
Q 001601           70 LDQRAK   75 (1046)
Q Consensus        70 le~r~k   75 (1046)
                      ++.+.+
T Consensus       261 le~~l~  266 (895)
T PRK01156        261 AESDLS  266 (895)
T ss_pred             HHHHHH
Confidence            333333

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.61  E-value=0.0016  Score=82.94  Aligned_cols=34  Identities=12%  Similarity=0.154  Sum_probs=13.1

Q ss_pred             HHhhhhhhHHHHHHHHhHhhHHHHHhHHHHHHHH
Q 001601           76 EIESKESDLVLAERRIKECNFELACKEKQLELVR  109 (1046)
Q Consensus        76 ~~e~~e~~l~l~e~~~ee~~~ele~Kek~l~~~r  109 (1046)
                      +++.+..++..++..+..+..++..-+.++...+
T Consensus       682 ~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~  715 (1164)
T TIGR02169       682 RLEGLKRELSSLQSELRRIENRLDELSQELSDAS  715 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.59  E-value=0.0014  Score=83.26  Aligned_cols=10  Identities=20%  Similarity=0.238  Sum_probs=5.6

Q ss_pred             hhhhcccccc
Q 001601         1012 HIASNHLRVR 1021 (1046)
Q Consensus      1012 ~~~~~~~~~~ 1021 (1046)
                      .+|..+++|.
T Consensus      1141 ~~~d~~~~~~ 1150 (1164)
T TIGR02169      1141 EYADRAIGVT 1150 (1164)
T ss_pred             HhcceeEeEE
Confidence            3555666654

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR00606 rad50 rad50

Probab=98.56  E-value=0.0097  Score=78.29  Aligned_cols=138  Identities=12%  Similarity=0.159  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHH---HHHHHHhhhhh
Q 001601          164 LENLIKDFCEQIELKEKDLRKIR--SSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEI---KKSIIQCETKL  238 (1046)
Q Consensus       164 ~~~~i~e~~~el~~ke~el~~~~--~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~e~~---~k~ie~~~kkl  238 (1046)
                      +...+..+..+++..+.++....  ..++....++.+.+..++.+..+++.+..+.+...+++...   ..++....-++
T Consensus       797 ~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl  876 (1311)
T TIGR00606       797 FQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQI  876 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555554444444222  14455555666666666666666666666666666665555   33333333333


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 001601          239 DCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREF  308 (1046)
Q Consensus       239 e~k~kEl~~~~~~i~e~~kele~kEkqle~~~~~l~~r~k~l~~~~~e~~~~e~e~e~~~kel~~Ke~e~  308 (1046)
                      ..       .......+..+|+-....++....++..-..+++....++...+.++++.......++.++
T Consensus       877 ~~-------~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  939 (1311)
T TIGR00606       877 GT-------NLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKA  939 (1311)
T ss_pred             HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22       1222233333333334444444444444444444444444444444444444444443333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.55  E-value=0.015  Score=78.00  Aligned_cols=51  Identities=22%  Similarity=0.233  Sum_probs=33.4

Q ss_pred             heecchhchHHHHHHhHHHH--HHhhhhhhHHHHHHHHHHHHHhhhhhhHHHH
Q 001601           37 NFTVQWKDLEEHLDISMKSL--EKQSNDADSKIRLLDQRAKEIESKESDLVLA   87 (1046)
Q Consensus        37 ~~~l~w~~le~h~~s~~~~~--e~~~~~~~~k~~~le~r~k~~e~~e~~l~l~   87 (1046)
                      .=+.+|=.|-.+++-.-..-  +.+.....-..+.+.+.+...|+...+++..
T Consensus       815 lr~w~W~~Lf~kvkPLL~~~~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~  867 (1930)
T KOG0161|consen  815 LRTWPWWRLFTKVKPLLKVTKTEEEMRAKEEEIQKLKEELQKSESKRKELEEK  867 (1930)
T ss_pred             hccCHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44788999999887665554  4444444445577777777777766666533

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.53  E-value=0.0049  Score=78.19  Aligned_cols=7  Identities=43%  Similarity=0.619  Sum_probs=2.6

Q ss_pred             HHHHHHH
Q 001601          402 YLKQLKE  408 (1046)
Q Consensus       402 ~~kele~  408 (1046)
                      +++.+..
T Consensus       973 ~i~~lg~  979 (1179)
T TIGR02168       973 RLKRLEN  979 (1179)
T ss_pred             HHHHHHH
Confidence            3333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PRK03918 chromosome segregation protein; Provisional

Probab=98.50  E-value=0.011  Score=74.03  Aligned_cols=9  Identities=22%  Similarity=0.552  Sum_probs=5.3

Q ss_pred             CCchhhHHH
Q 001601          693 PDPAMFVLD  701 (1046)
Q Consensus       693 ~DPAkLVLD  701 (1046)
                      .+|.-+|||
T Consensus       811 ~~~~~lilD  819 (880)
T PRK03918        811 GNIPLLILD  819 (880)
T ss_pred             CCCCeEEEe
Confidence            455556666

>TIGR00606 rad50 rad50

Probab=98.48  E-value=0.019  Score=75.71  Aligned_cols=131  Identities=17%  Similarity=0.171  Sum_probs=61.1

Q ss_pred             HhhHHHHHHhHHHHHHhhhchhheecchhchHHHHHHhHHHHHHh---hhhh----hHHHHHHHHHHHHHhhhhhhHHHH
Q 001601           15 ESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQ---SNDA----DSKIRLLDQRAKEIESKESDLVLA   87 (1046)
Q Consensus        15 ~~k~e~~~~~~~~~~~qas~~l~~~l~w~~le~h~~s~~~~~e~~---~~~~----~~k~~~le~r~k~~e~~e~~l~l~   87 (1046)
                      +-+-..|++-++.+..+|.+..-+.+-=++|.+.-.+...-+...   +..+    ..+ ..+   .+++.++..++..+
T Consensus       514 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~-~~l---~~~~~~~~~el~~~  589 (1311)
T TIGR00606       514 DRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNK-KQL---EDWLHSKSKEINQT  589 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-HHH---HHHHHHHHHHHHHH
Confidence            344456667777777777777777776666655554443332221   1111    001 111   23333333344444


Q ss_pred             HHHHhHhhHHHHHhHHHHHHHHHhhhhhHHHHhhhhhhhh------hhHHHHHHHHHHhhhhhhhhhH
Q 001601           88 ERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELN------LVKKSVEEWLEKLDLKMKEVGL  149 (1046)
Q Consensus        88 e~~~ee~~~ele~Kek~l~~~r~~i~ec~~El~~k~~eL~------~~~~~veE~~~e~~~Ke~el~~  149 (1046)
                      ..++....+++..-+..+..++..+..+..++.+.+..|.      .....|.++..+++.-...++.
T Consensus       590 ~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~~~~~~~~~~~L~~~~~~l~~~~~~~~~  657 (1311)
T TIGR00606       590 RDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAM  657 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444444444444443333333      3444556666666555555443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.40  E-value=0.034  Score=74.79  Aligned_cols=43  Identities=21%  Similarity=0.203  Sum_probs=23.6

Q ss_pred             HHHHHhHHHHHHHHHhhhhhHHHHhhhhhhhhhhHHHHHHHHH
Q 001601           96 FELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLE  138 (1046)
Q Consensus        96 ~ele~Kek~l~~~r~~i~ec~~El~~k~~eL~~~~~~veE~~~  138 (1046)
                      .+++..++.++.....+.+...|....+.++..+.+.+..|..
T Consensus       936 ~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e  978 (1930)
T KOG0161|consen  936 QEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDE  978 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444555556666666666666666655444

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.28  E-value=0.011  Score=76.80  Aligned_cols=17  Identities=24%  Similarity=0.610  Sum_probs=11.3

Q ss_pred             HHHHHhHHHHHHHHHHH
Q 001601          411 KQFHSLKEALDERWQDL  427 (1046)
Q Consensus       411 kefeskek~leer~Kel  427 (1046)
                      .-|....+.|..-.+.|
T Consensus      1013 ~~f~~In~~F~~if~~L 1029 (1163)
T COG1196        1013 ETFDKINENFSEIFKEL 1029 (1163)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            35666667777777776

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.26  E-value=0.018  Score=72.21  Aligned_cols=133  Identities=25%  Similarity=0.333  Sum_probs=66.5

Q ss_pred             HhhhhhhhhhHHHhhhh-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 001601          139 KLDLKMKEVGLVEKSND-----KSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDY  213 (1046)
Q Consensus       139 e~~~Ke~el~~~~~~~~-----k~~~d~~~~~~~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~  213 (1046)
                      ++.+|.-+|....++++     +.+.|...+...++++.-+|+.+..-+......|....+.   ...+-...+..+.++
T Consensus       716 ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~---~~d~~~~re~rlkdl  792 (1174)
T KOG0933|consen  716 QLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKK---MKDAKANRERRLKDL  792 (1174)
T ss_pred             HHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHhhhhhHhHHHHH
Confidence            34444444444444432     1123555577777777778877777666665555444433   234555555556666


Q ss_pred             HHHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001601          214 AEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVR  274 (1046)
Q Consensus       214 ~~ElE~KeK~~e~~~k~ie~~~kkle~k~kEl~~~~~~i~e~~kele~kEkqle~~~~~l~  274 (1046)
                      .++|.......++-.++.+..+...+.-..|.+..+..+.-...+++.++.++++...++.
T Consensus       793 ~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~  853 (1174)
T KOG0933|consen  793 EKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELG  853 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666655555555554444444433333333333333333333444444444443333333

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.21  E-value=0.034  Score=72.59  Aligned_cols=21  Identities=29%  Similarity=0.523  Sum_probs=10.1

Q ss_pred             cCCcHHHHHHHHHHHhhcCCC
Q 001601          604 EDNSLEVLGFLHLLAAYGLGP  624 (1046)
Q Consensus       604 ~enslEalgFLqLLA~yGL~s  624 (1046)
                      |+.+|-||+||-=+=.|.=+|
T Consensus      1070 GEKsLtAlAllFAi~~~~PaP 1090 (1163)
T COG1196        1070 GEKSLTALALLFAIQKYRPAP 1090 (1163)
T ss_pred             cHHHHHHHHHHHHHHhhCCCC
Confidence            345566666654443333333

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.84  E-value=0.23  Score=63.65  Aligned_cols=103  Identities=20%  Similarity=0.269  Sum_probs=60.9

Q ss_pred             hHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 001601          206 LQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEE  285 (1046)
Q Consensus       206 ~~~eiee~~~ElE~KeK~~e~~~k~ie~~~kkle~k~kEl~~~~~~i~e~~kele~kEkqle~~~~~l~~r~k~l~~~~~  285 (1046)
                      ..+.+++++.++..+-.++-.....++..+.+++...+.+.   .+++..       +++++.-.+.+...++-.++...
T Consensus       371 ~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~---~k~kKl-------eke~ek~~~~~~e~e~~pe~~~~  440 (1293)
T KOG0996|consen  371 VKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLT---SKIKKL-------EKEIEKARRKKSELEKAPEKARI  440 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH-------HHHHHHHHhhHHHHHhCchhhHh
Confidence            33446666666666666676777777777777754444433   333333       34444445555555555555555


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001601          286 KLDAMKEEMKKYFNDIELKEREFNGIRKCIEKR  318 (1046)
Q Consensus       286 e~~~~e~e~e~~~kel~~Ke~e~~~~~K~ie~r  318 (1046)
                      +...++.+++.+...++--++++.+++..+..+
T Consensus       441 ~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~  473 (1293)
T KOG0996|consen  441 EIQKCQTEIEQLEELLEKEERELDEILDSLKQE  473 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            566666666666666666666777776666664

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.58  E-value=0.085  Score=57.30  Aligned_cols=128  Identities=27%  Similarity=0.215  Sum_probs=78.9

Q ss_pred             HHHHHhhhhhhhHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001601          330 KCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEK  409 (1046)
Q Consensus       330 ~~~~~e~e~k~~e~e~k~kEL~s~eK~~~~~~kEle~Kekel~~i~~~~~e~~kelE~KEKele~~~k~~e~~~kele~K  409 (1046)
                      +......+.+-..++.++++....-...+.+..|...+-.-++.-..........++.+-++|+.....+...++.++..
T Consensus        84 E~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~  163 (237)
T PF00261_consen   84 ENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEAS  163 (237)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhh
Confidence            33444444445555555555555555555555555555555544444445556677777777777777777777777777


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001601          410 EKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIRKAVED  457 (1046)
Q Consensus       410 ekefeskek~leer~KelesKek~fe~rvKE~elKEkq~e~~~~~~e~  457 (1046)
                      +.+....+..++.+++.|.-+-+..+.|....+-....++..-..++.
T Consensus       164 ~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~  211 (237)
T PF00261_consen  164 EEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLED  211 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777777777777777776766666655555544433333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=97.56  E-value=0.78  Score=61.79  Aligned_cols=190  Identities=20%  Similarity=0.237  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhh-------------hhh----------
Q 001601          185 IRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKL-------------DCK----------  241 (1046)
Q Consensus       185 ~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie~~~kkl-------------e~k----------  241 (1046)
                      ....|...+++.+.=.+.+.=+..+..-+.-...+-.+.++..+..+-.++...             =.+          
T Consensus      1151 L~~iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~Es 1230 (1822)
T KOG4674|consen 1151 LQNIVSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRES 1230 (1822)
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHh
Confidence            444444455444443444443333334444444554555555555555554431             111          


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH---HHhhhhhHH-----HHHHH
Q 001601          242 ----KKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMK---KYFNDIELK-----EREFN  309 (1046)
Q Consensus       242 ----~kEl~~~~~~i~e~~kele~kEkqle~~~~~l~~r~k~l~~~~~e~~~~e~e~e---~~~kel~~K-----e~e~~  309 (1046)
                          ++++....+.+.++.++++..+..+.-.+-++..-..++...+.++..++.++.   .+..+|..+     =..++
T Consensus      1231 N~~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~ 1310 (1822)
T KOG4674|consen 1231 NKVLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYE 1310 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHH
Confidence                333334444444455555555555544444444444444444445554444442   233344444     22344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHH
Q 001601          310 GIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVI  374 (1046)
Q Consensus       310 ~~~K~ie~r~kELe~KEkql~~~~~e~e~k~~e~e~k~kEL~s~eK~~~~~~kEle~Kekel~~i  374 (1046)
                      .....|+.-..+|+.|+++..+.-+.+....+.+..++++|.--+.....++++++.+-..|..-
T Consensus      1311 kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~ 1375 (1822)
T KOG4674|consen 1311 KLKSEISRLKEELEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAA 1375 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555566777777777777777777777777777777777777777777777666666433

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.47  E-value=0.17  Score=55.04  Aligned_cols=84  Identities=21%  Similarity=0.094  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHHHHH
Q 001601          320 QELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMA  399 (1046)
Q Consensus       320 kELe~KEkql~~~~~e~e~k~~e~e~k~kEL~s~eK~~~~~~kEle~Kekel~~i~~~~~e~~kelE~KEKele~~~k~~  399 (1046)
                      .+...|=..++.-....+.+-..++.++.+|+..=+.++..++.++..+.+....++.|...+..|+.+-++.+.+....
T Consensus       116 ~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~a  195 (237)
T PF00261_consen  116 EEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFA  195 (237)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333334444445555555566666666666666666666666665555555555555555545444444443


Q ss_pred             HHHH
Q 001601          400 IGYL  403 (1046)
Q Consensus       400 e~~~  403 (1046)
                      +.++
T Consensus       196 E~~v  199 (237)
T PF00261_consen  196 ERRV  199 (237)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            3333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.46  E-value=0.51  Score=57.06  Aligned_cols=99  Identities=20%  Similarity=0.271  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhh
Q 001601          164 LENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKE---KHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDC  240 (1046)
Q Consensus       164 ~~~~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~ke---~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie~~~kkle~  240 (1046)
                      ++.++..+..|++.|+.|...++..+....+.++-..   ..++.+-.+.+++..+|.-=..++|.+++++         
T Consensus       292 ~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~v---------  362 (581)
T KOG0995|consen  292 MEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEV---------  362 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence            5556777777777777777777777766666654431   3334444444444444444444444443333         


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001601          241 KKKELELTQTSIIELSLELHLEEEKLESLQRIVRLR  276 (1046)
Q Consensus       241 k~kEl~~~~~~i~e~~kele~kEkqle~~~~~l~~r  276 (1046)
                           =....+++...++++.+=.++.+..+.|.+.
T Consensus       363 -----w~~~l~~~~~f~~le~~~~~~~~l~~~i~l~  393 (581)
T KOG0995|consen  363 -----WELKLEIEDFFKELEKKFIDLNSLIRRIKLG  393 (581)
T ss_pred             -----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 3333445555666666667777777777666

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=97.45  E-value=0.2  Score=63.93  Aligned_cols=67  Identities=10%  Similarity=0.302  Sum_probs=29.3

Q ss_pred             hhHHHHHHHHHHhhhhhhhhhHHHhhhhhhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001601          128 LVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLV-------DQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEK  194 (1046)
Q Consensus       128 ~~~~~veE~~~e~~~Ke~el~~~~~~~~k~~~-------d~~~~~~~i~e~~~el~~ke~el~~~~~~Ie~~~k  194 (1046)
                      ++.+.+..+...|.-++..+-.....+++.+.       +++.++..|+++..+-+....|+...+..+...+.
T Consensus       278 ~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~r  351 (1074)
T KOG0250|consen  278 EVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRR  351 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence            33333334444444444444444444333332       22334445555555555555555444444444443

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.36  E-value=0.92  Score=57.79  Aligned_cols=39  Identities=21%  Similarity=0.365  Sum_probs=29.4

Q ss_pred             HHHHHHhhhh--ccCCcHHHHHHHHHHHhhcCCCCCChHHH
Q 001601          593 AGEWKKKMRV--AEDNSLEVLGFLHLLAAYGLGPSFDGIEL  631 (1046)
Q Consensus       593 A~eWK~kl~~--d~enslEalgFLqLLA~yGL~seFD~dEL  631 (1046)
                      ..-||..+..  ++.-||-||....=+-.|.=+|-|=-||+
T Consensus      1073 G~iWKeSL~ELSGGQRSLVALsLIlamL~fkPAPlYILDEV 1113 (1174)
T KOG0933|consen 1073 GGIWKESLSELSGGQRSLVALSLILAMLKFKPAPLYILDEV 1113 (1174)
T ss_pred             CccHHHHHHHhcCchHHHHHHHHHHHHHcCCCCceeehhhh
Confidence            3469999974  34578999998777777888888766665

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.30  E-value=1.2  Score=57.76  Aligned_cols=54  Identities=24%  Similarity=0.315  Sum_probs=33.3

Q ss_pred             HHHHHHhHhhHHHHHhHHHHHHHHHhhhhhHHHHhhhhhhhhhhHHHHHHHHHH
Q 001601           86 LAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEK  139 (1046)
Q Consensus        86 l~e~~~ee~~~ele~Kek~l~~~r~~i~ec~~El~~k~~eL~~~~~~veE~~~e  139 (1046)
                      -++++++.-+++..+-++-.+..++.|++|..|+..-.+.+..-+..+.+-...
T Consensus       416 Kleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~  469 (1293)
T KOG0996|consen  416 KLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDS  469 (1293)
T ss_pred             HHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445556666666666666666677777777776666655555555555544443

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=97.13  E-value=1.2  Score=54.80  Aligned_cols=161  Identities=20%  Similarity=0.233  Sum_probs=85.5

Q ss_pred             HHHHHHHhhhhhHHHHhhhhhhhhhhHHHHHHHHHHhhhhhhhhhHHHh------------------hhhhhhhHHHHHH
Q 001601          104 QLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEK------------------SNDKSLVDQRRLE  165 (1046)
Q Consensus       104 ~l~~~r~~i~ec~~El~~k~~eL~~~~~~veE~~~e~~~Ke~el~~~~~------------------~~~k~~~d~~~~~  165 (1046)
                      +|..++-..++|..=-..-+..|.-..+-+.....+-+++..++..+..                  .+..++--+...+
T Consensus       297 eL~~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~e  376 (786)
T PF05483_consen  297 ELEDIKQSLQESESTQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNE  376 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            4555555566666544555555555555555444444444444433211                  1111121223366


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhh
Q 001601          166 NLIKDFCEQIELKEKDLRKIRS-------SIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKL  238 (1046)
Q Consensus       166 ~~i~e~~~el~~ke~el~~~~~-------~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie~~~kkl  238 (1046)
                      +.+.-++.+|..|..+|+.|.+       .++...+.|..+++ +-.-.+.++.++++|..++.++.-.   |-.+++++
T Consensus       377 d~lk~l~~eLqkks~eleEmtk~k~~ke~eleeL~~~L~e~qk-ll~ekk~~eki~E~lq~~eqel~~l---lq~~ekev  452 (786)
T PF05483_consen  377 DQLKILTMELQKKSSELEEMTKQKNNKEVELEELKKILAEKQK-LLDEKKQFEKIAEELQGTEQELTGL---LQIREKEV  452 (786)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhHH
Confidence            6777788888888888887765       34444555554443 2222233555666666666665443   44455555


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001601          239 DCKKKELELTQTSIIELSLELHLEEEKLES  268 (1046)
Q Consensus       239 e~k~kEl~~~~~~i~e~~kele~kEkqle~  268 (1046)
                      .--.-.|..+...=..+.++.+..+.+|+.
T Consensus       453 ~dLe~~l~~~~~~eq~yskQVeeLKtELE~  482 (786)
T PF05483_consen  453 HDLEIQLTTIKESEQHYSKQVEELKTELEQ  482 (786)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            444555555555555555666666666654

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=97.04  E-value=1.8  Score=54.90  Aligned_cols=73  Identities=23%  Similarity=0.256  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhh
Q 001601          166 NLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKL  238 (1046)
Q Consensus       166 ~~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie~~~kkl  238 (1046)
                      ..|-.|--+++++..++..++.+|++..-.|..++.|-.-+...++.+.-+|+.|..+++.....++......
T Consensus       301 ~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~  373 (775)
T PF10174_consen  301 SELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEK  373 (775)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566677778888888888999999999999999999999999999998888888888877766665554443

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.95  E-value=2.2  Score=54.51  Aligned_cols=101  Identities=22%  Similarity=0.237  Sum_probs=57.8

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhHHHhHHHHHHHHH
Q 001601          290 MKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKK  369 (1046)
Q Consensus       290 ~e~e~e~~~kel~~Ke~e~~~~~K~ie~r~kELe~KEkql~~~~~e~e~k~~e~e~k~kEL~s~eK~~~~~~kEle~Kek  369 (1046)
                      +-.+++++--.+...-.+-.-+++.++.=..+|+.+-.+++.+...+.    +...++.++...-.++.....|+-.+++
T Consensus       395 ir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~----e~~~r~~~~~~~~~~~k~~~del~~~Rk  470 (1200)
T KOG0964|consen  395 IRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSIN----ETKGRMEEFDAENTELKRELDELQDKRK  470 (1200)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh----hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444333334344455555544555555555554444444    5667777887778888888888888888


Q ss_pred             HHHHHHhHHHHHhhhhhhhHHHHHHHHH
Q 001601          370 HLCVIENSAAELSDECESNELELDLIQT  397 (1046)
Q Consensus       370 el~~i~~~~~e~~kelE~KEKele~~~k  397 (1046)
                      .+   |..-..+...++..+..+...++
T Consensus       471 ~l---WREE~~l~~~i~~~~~dl~~~~~  495 (1200)
T KOG0964|consen  471 EL---WREEKKLRSLIANLEEDLSRAEK  495 (1200)
T ss_pred             HH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            88   65444444444444444444443

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.91  E-value=2  Score=53.55  Aligned_cols=119  Identities=17%  Similarity=0.233  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001601          261 LEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELK----EREFNGIRKCIEKRSQELTLKEKQLKCVQESL  336 (1046)
Q Consensus       261 ~kEkqle~~~~~l~~r~k~l~~~~~e~~~~e~e~e~~~kel~~K----e~e~~~~~K~ie~r~kELe~KEkql~~~~~e~  336 (1046)
                      +|.++-+..+. ++.+.++|.-..+-|..+-.++..++-|+++.    --+++++.+.++.++.|...+.-++++.+..+
T Consensus       424 Qk~reqe~iv~-~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl  502 (1118)
T KOG1029|consen  424 QKNREQEWIVY-LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKL  502 (1118)
T ss_pred             hhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444443333 55666666555555555555666666666554    34788889999998888877777777766655


Q ss_pred             ---hhhhhHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhHHHH
Q 001601          337 ---EGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAE  380 (1046)
Q Consensus       337 ---e~k~~e~e~k~kEL~s~eK~~~~~~kEle~Kekel~~i~~~~~e  380 (1046)
                         --...+++.+.|...+.-+.-..+..+|+....+-+.+..-++.
T Consensus       503 ~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikd  549 (1118)
T KOG1029|consen  503 QKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKD  549 (1118)
T ss_pred             HhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence               22345667777777777777777788888777666655444433

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=96.90  E-value=2.5  Score=54.37  Aligned_cols=20  Identities=30%  Similarity=0.355  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 001601          314 CIEKRSQELTLKEKQLKCVQ  333 (1046)
Q Consensus       314 ~ie~r~kELe~KEkql~~~~  333 (1046)
                      .++.+..+|......+....
T Consensus       563 ~le~~~~~l~~~~~~~~~~~  582 (908)
T COG0419         563 QLEDRLQELKELLEELRLLR  582 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444433333

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=96.87  E-value=2.4  Score=53.78  Aligned_cols=132  Identities=20%  Similarity=0.269  Sum_probs=108.1

Q ss_pred             HhhhhhhHHHHHHHHhHhhHHHHHhHHHHHHHHHhhhhhHHHHhhhhhhhhhhHHHHHHHHHHhhhhhhhhhHHHhhhhh
Q 001601           77 IESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDK  156 (1046)
Q Consensus        77 ~e~~e~~l~l~e~~~ee~~~ele~Kek~l~~~r~~i~ec~~El~~k~~eL~~~~~~veE~~~e~~~Ke~el~~~~~~~~k  156 (1046)
                      ++..+.+|.-++.++..|..+++-..++..+.|..|+=|--++..++.+-..+.-.|+.....++.|...++.-...+.+
T Consensus       289 ~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~  368 (775)
T PF10174_consen  289 MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEK  368 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666777788888999999999999999999999999999999999999999999999999999999999886655544


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 001601          157 SLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQS  208 (1046)
Q Consensus       157 ~~~d~~~~~~~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~  208 (1046)
                      -..+..++-..|.++...++.++-+++..++-|+.....|..|.+.+...-.
T Consensus       369 ~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~  420 (775)
T PF10174_consen  369 LQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKE  420 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4446666667788888888888888888888888888777777665555443

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=96.87  E-value=2.4  Score=53.73  Aligned_cols=167  Identities=23%  Similarity=0.243  Sum_probs=112.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhh----hHHHHHHH---HH
Q 001601          239 DCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDI----ELKEREFN---GI  311 (1046)
Q Consensus       239 e~k~kEl~~~~~~i~e~~kele~kEkqle~~~~~l~~r~k~l~~~~~e~~~~e~e~e~~~kel----~~Ke~e~~---~~  311 (1046)
                      +..+.|+.-+.+.|+-..-.-|.-|..-++.+.+|+.=..+++....+++-+..+|+..=-+-    ....++++   .+
T Consensus       300 e~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~r  379 (1243)
T KOG0971|consen  300 ERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNAR  379 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHH
Confidence            344667777777777777666677888888888888888888888888888888886652111    11112221   12


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHhhhhhhhHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHh---HHHHHhhhhhh
Q 001601          312 RKCIEKRSQELTLKEKQ-LKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIEN---SAAELSDECES  387 (1046)
Q Consensus       312 ~K~ie~r~kELe~KEkq-l~~~~~e~e~k~~e~e~k~kEL~s~eK~~~~~~kEle~Kekel~~i~~---~~~e~~kelE~  387 (1046)
                      -|.-=-|+.+|-.-+|+ +-..++++|-+..|++    ||.....++..++...|++=-.|-...+   +..+.+..+..
T Consensus       380 LKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~----eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtd  455 (1243)
T KOG0971|consen  380 LKDALVRLRDLSASEKQDHQKLQKELEKKNSELE----ELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTD  455 (1243)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHh
Confidence            22222266677677776 4556677777766654    6777788888888888887666632221   33455788888


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH
Q 001601          388 NELELDLIQTMAIGYLKQLKEK  409 (1046)
Q Consensus       388 KEKele~~~k~~e~~~kele~K  409 (1046)
                      |.-+++.+++.+++.+.++|.-
T Consensus       456 knlnlEekVklLeetv~dlEal  477 (1243)
T KOG0971|consen  456 KNLNLEEKVKLLEETVGDLEAL  477 (1243)
T ss_pred             hccCHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888777764

>PRK11637 AmiB activator; Provisional

Probab=96.85  E-value=0.73  Score=54.06  Aligned_cols=17  Identities=18%  Similarity=0.163  Sum_probs=6.5

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 001601          253 IELSLELHLEEEKLESL  269 (1046)
Q Consensus       253 ~e~~kele~kEkqle~~  269 (1046)
                      ....++++.....+..+
T Consensus       113 ~~~q~~l~~~~~~l~~r  129 (428)
T PRK11637        113 AKLEQQQAAQERLLAAQ  129 (428)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333333333333333

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.78  E-value=2.2  Score=51.94  Aligned_cols=213  Identities=20%  Similarity=0.250  Sum_probs=109.0

Q ss_pred             hhHHHHHHHHHHhhhhhhhhhHHHhhhh---hh-----h--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001601          128 LVKKSVEEWLEKLDLKMKEVGLVEKSND---KS-----L--VDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELV  197 (1046)
Q Consensus       128 ~~~~~veE~~~e~~~Ke~el~~~~~~~~---k~-----~--~d~~~~~~~i~e~~~el~~ke~el~~~~~~Ie~~~kel~  197 (1046)
                      -+.+.++.-+++++.|+.|+..++..+.   +.     +  .|-++|...+.+++.++.-...++|.+.+.+        
T Consensus       291 ~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~v--------  362 (581)
T KOG0995|consen  291 HMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEV--------  362 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence            3456666777777777777777665331   11     1  2555566666666666666665555555444        


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHh-hhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001601          198 MKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQC-ETKL---DCKKKELELTQTSIIELSLELHLEEEKLESLQRIV  273 (1046)
Q Consensus       198 ~ke~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie~~-~kkl---e~k~kEl~~~~~~i~e~~kele~kEkqle~~~~~l  273 (1046)
                            -.+..+|++..++++.+-.+|....+.|..- ....   +.-.....-..-.++.+++  =.-...+.+....+
T Consensus       363 ------w~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V~--~~l~el~~ei~~~~  434 (581)
T KOG0995|consen  363 ------WELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATNGVDLKSYVK--PLLKELLDEISEEL  434 (581)
T ss_pred             ------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCccccccchhHhH--HHHHHHHHHHHHHH
Confidence                  3344567888889999999999888888776 1111   0000000000000001110  11223344444445


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhhHHHHHHHHHHH
Q 001601          274 RLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESL-EGCRNEFEEKENELIS  352 (1046)
Q Consensus       274 ~~r~k~l~~~~~e~~~~e~e~e~~~kel~~Ke~e~~~~~K~ie~r~kELe~KEkql~~~~~e~-e~k~~e~e~k~kEL~s  352 (1046)
                      ..+.+++.+.+.++..+..-+.++.           .+...++.+.++++++.++.+.-..+. ..|..|.+..+++|-.
T Consensus       435 ~~~~~~~~tLq~~~~~~~~~i~E~~-----------~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~  503 (581)
T KOG0995|consen  435 HEAENELETLQEHFSNKASTIEEKI-----------QILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLN  503 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555554444333333322           444455555666666655544443333 5555555555555554


Q ss_pred             HHHhHHHhHHHHHHH
Q 001601          353 VEKLIDKCSEELELK  367 (1046)
Q Consensus       353 ~eK~~~~~~kEle~K  367 (1046)
                      ..-.+....++.+..
T Consensus       504 l~l~~~~~m~~a~~~  518 (581)
T KOG0995|consen  504 LKLVLNTSMKEAEEL  518 (581)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            444444444443333

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=96.76  E-value=3.2  Score=53.71  Aligned_cols=78  Identities=19%  Similarity=0.288  Sum_probs=33.2

Q ss_pred             HHHHHHhhhhhhHHHHHHHHhHhhHHHHHhHHHHHHHHHhhhhhHHHHhhhhhhhhhhHHHHHHHHHHhhhhhhhhhH
Q 001601           72 QRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGL  149 (1046)
Q Consensus        72 ~r~k~~e~~e~~l~l~e~~~ee~~~ele~Kek~l~~~r~~i~ec~~El~~k~~eL~~~~~~veE~~~e~~~Ke~el~~  149 (1046)
                      ++.-.+++....+-.+++.+++..-+++....+++.+|.++..-.+++..-+.+++..-..+.+-..+.+..+++++-
T Consensus       306 ~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~  383 (1074)
T KOG0250|consen  306 EKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIAD  383 (1074)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444445555555555555555555555554433333333333333333333333333333333333333

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=96.53  E-value=6.1  Score=53.91  Aligned_cols=56  Identities=21%  Similarity=0.294  Sum_probs=39.3

Q ss_pred             chhhhhhhhHhhHHHHHHhHHHHHHhhhchhheecchhchHHHHHHhHHHHHHhhhhhh
Q 001601            6 NNKEELRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDAD   64 (1046)
Q Consensus         6 ~~~~~l~~~~~k~e~~~~~~~~~~~qas~~l~~~l~w~~le~h~~s~~~~~e~~~~~~~   64 (1046)
                      ++.+.+.+++-|=++|++.++...+.+-++.   =+.++|.+++-.-...+...+.++.
T Consensus       679 k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~---er~~~l~~~i~~~~q~~~~~s~eL~  734 (1822)
T KOG4674|consen  679 KLKNELNLAKEKLENLEKNLELTKEEVETLE---ERNKNLQSTISKQEQTVHTLSQELL  734 (1822)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5678888888888888888888888776655   3556666666665555555555443

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=96.42  E-value=5.9  Score=52.65  Aligned_cols=55  Identities=18%  Similarity=0.294  Sum_probs=37.9

Q ss_pred             HHHHHhHHHHHHhhhchhheecchhchHHHHHHhHHHHHHhhhhhhHHHHHHHHH
Q 001601           19 EILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKIRLLDQR   73 (1046)
Q Consensus        19 e~~~~~~~~~~~qas~~l~~~l~w~~le~h~~s~~~~~e~~~~~~~~k~~~le~r   73 (1046)
                      +.+|..++.+..+-+++..+..|=+.|-.++.......+....++..+...+...
T Consensus       242 ~~~r~~~~~l~~~~~~l~~~~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  296 (1201)
T PF12128_consen  242 EKVRPEFDKLQQQYRQLQALEQQLCHLHAELNADEQQLEQEQPELKEELNELNEE  296 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            5677777888888888888888877777777777766666665555555444333

>PHA02562 46 endonuclease subunit; Provisional

Probab=96.31  E-value=3.8  Score=49.17  Aligned_cols=68  Identities=15%  Similarity=0.226  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhh
Q 001601          167 LIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETK  237 (1046)
Q Consensus       167 ~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie~~~kk  237 (1046)
                      .++.+..++.....++......|+...+.+.   .....+..+++++..+....+.+++....++..-...
T Consensus       182 ~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~---~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~  249 (562)
T PHA02562        182 QIQTLDMKIDHIQQQIKTYNKNIEEQRKKNG---ENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMD  249 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3344444444444444444444444433322   2233334444444444444444444444444444333

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=96.28  E-value=7  Score=51.99  Aligned_cols=62  Identities=16%  Similarity=0.224  Sum_probs=31.6

Q ss_pred             HHHHHHhHhhHHHHHhHHHHHHHHHhhhhhHHHHhhhhhhhhhhHHHHHHHHHHhhhhhhhh
Q 001601           86 LAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEV  147 (1046)
Q Consensus        86 l~e~~~ee~~~ele~Kek~l~~~r~~i~ec~~El~~k~~eL~~~~~~veE~~~e~~~Ke~el  147 (1046)
                      ..+..++.+......-...+..++....++..+.+....+|...+..+.++...+..=...|
T Consensus       473 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L  534 (1201)
T PF12128_consen  473 QADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQL  534 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            44444445555555555555555555555555555555555555555555544444333333

>PHA02562 46 endonuclease subunit; Provisional

Probab=96.24  E-value=1.7  Score=52.06  Aligned_cols=59  Identities=8%  Similarity=0.165  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhH
Q 001601          166 NLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLY  224 (1046)
Q Consensus       166 ~~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~  224 (1046)
                      ..+.++..+....+.+++.++..|....+++..-...+..+...+......++.-++.+
T Consensus       220 ~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~  278 (562)
T PHA02562        220 NKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVI  278 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444433333333334444444444444444333333

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=95.51  E-value=10  Score=47.83  Aligned_cols=238  Identities=16%  Similarity=0.152  Sum_probs=124.4

Q ss_pred             HHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHhHhhHHHHHhHHHHHHHHHhhhhhHHHHhhhhhh
Q 001601           46 EEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGE  125 (1046)
Q Consensus        46 e~h~~s~~~~~e~~~~~~~~k~~~le~r~k~~e~~e~~l~l~e~~~ee~~~ele~Kek~l~~~r~~i~ec~~El~~k~~e  125 (1046)
                      ++-+---.+.+|+...+..+-++.|..+..++|+   ++--++.-++.....+..-+-+|+.......+.+.+|..++-+
T Consensus        87 triyRrdv~llEddlk~~~sQiriLQn~c~~lE~---ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~e  163 (1265)
T KOG0976|consen   87 TRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEM---EKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHD  163 (1265)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHH
Confidence            3444444556677777778888888888776544   3333444445555555555666777777777777777777777


Q ss_pred             hhhhHHHHHHHHHHhhhhhhhhhHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------H
Q 001601          126 LNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRS-----------------S  188 (1046)
Q Consensus       126 L~~~~~~veE~~~e~~~Ke~el~~~~~~~~k~~~d~~~~~~~i~e~~~el~~ke~el~~~~~-----------------~  188 (1046)
                      +..+.+.+.....++..++.|+...-.              .+++.+.+++.|-+.|+.-.+                 .
T Consensus       164 If~~~~~L~nk~~~lt~~~~q~~tkl~--------------e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~  229 (1265)
T KOG0976|consen  164 IFMIGEDLHDKNEELNEFNMEFQTKLA--------------EANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQK  229 (1265)
T ss_pred             HHHHHHHHhhhhhHHhHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence            777777666655666666666654111              111122222222222221111                 1


Q ss_pred             HHHHHHHHHH-HH--HhhhhhHHHH-------HHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHH-------
Q 001601          189 IEECEKELVM-KE--KHASSLQSLI-------EDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTS-------  251 (1046)
Q Consensus       189 Ie~~~kel~~-ke--~~l~~~~~ei-------ee~~~ElE~KeK~~e~~~k~ie~~~kkle~k~kEl~~~~~~-------  251 (1046)
                      |-.....|-+ ++  +-++..-.-|       +-..++|+-|+.|++.++--+...--+.++.++++..-.+.       
T Consensus       230 vl~ev~QLss~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~  309 (1265)
T KOG0976|consen  230 VLKEVMQLSSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTR  309 (1265)
T ss_pred             HHHHHHHHHHhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            1122222222 11  1111111122       33368888888888888877777777777777777633222       


Q ss_pred             ----HHHHHHH--HH---HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhh
Q 001601          252 ----IIELSLE--LH---LEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDI  301 (1046)
Q Consensus       252 ----i~e~~ke--le---~kEkqle~~~~~l~~r~k~l~~~~~e~~~~e~e~e~~~kel  301 (1046)
                          +++-.+=  ++   ++-..+.-+|-.++.|. +++|.-+++..++++......+.
T Consensus       310 a~gdseqatkylh~enmkltrqkadirc~LlEarr-k~egfddk~~eLEKkrd~al~dv  367 (1265)
T KOG0976|consen  310 ADGDSEQATKYLHLENMKLTRQKADIRCALLEARR-KAEGFDDKLNELEKKRDMALMDV  367 (1265)
T ss_pred             hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHhH
Confidence                2222221  22   23334455555555554 45666555555555554444333

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=95.45  E-value=9.8  Score=47.19  Aligned_cols=195  Identities=20%  Similarity=0.260  Sum_probs=111.1

Q ss_pred             HhhHHHHHhHHHHHHHHHhhhhhHHHHhhhhhhhhhhHHHHHHHHHHhhhhhhhhhHHHhhh-------hhhhhHHHH--
Q 001601           93 ECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSN-------DKSLVDQRR--  163 (1046)
Q Consensus        93 e~~~ele~Kek~l~~~r~~i~ec~~El~~k~~eL~~~~~~veE~~~e~~~Ke~el~~~~~~~-------~k~~~d~~~--  163 (1046)
                      +.-.+++.-.++|+.++..|.+|..+++.-...+..+...+++......-.+.++.- .+++       +..+..+..  
T Consensus       325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l-~~k~~~lL~d~e~ni~kL~~~v  403 (594)
T PF05667_consen  325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKL-KKKTVELLPDAEENIAKLQALV  403 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCcHHHHHHHHHHH
Confidence            334444444455555555555555555555555555555555544444444444432 1111       111211111  


Q ss_pred             --HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhh
Q 001601          164 --LENLIKDFCEQIELKEKDL----RKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETK  237 (1046)
Q Consensus       164 --~~~~i~e~~~el~~ke~el----~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie~~~kk  237 (1046)
                        -...+.++..+|+.....|    +..+........+...+-..++.+..+++++..|+..|+..+.....+++..-+.
T Consensus       404 ~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~  483 (594)
T PF05667_consen  404 EASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD  483 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence              2336777788887755444    4444444444445555668888888899999999999999998888888887776


Q ss_pred             hhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 001601          238 LDCK--KKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLD  288 (1046)
Q Consensus       238 le~k--~kEl~~~~~~i~e~~kele~kEkqle~~~~~l~~r~k~l~~~~~e~~  288 (1046)
                      +.+.  -.-.-.+=+.|+.+..+|.-.-.+--..+++|+.=.-+|.+.+.-.+
T Consensus       484 ~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~d  536 (594)
T PF05667_consen  484 VNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTD  536 (594)
T ss_pred             CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            4211  01111334555555556666666666666666666666666554444

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.38  E-value=13  Score=48.26  Aligned_cols=87  Identities=26%  Similarity=0.375  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHhHhhHHHHHhHHHHHHHHHhhhhhHHHHhhhhhhhhhhHHHHHHHHHHhhhhhh
Q 001601           66 KIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMK  145 (1046)
Q Consensus        66 k~~~le~r~k~~e~~e~~l~l~e~~~ee~~~ele~Kek~l~~~r~~i~ec~~El~~k~~eL~~~~~~veE~~~e~~~Ke~  145 (1046)
                      |+|++++ ++++..+.++....+..+......+...+-++...|..+..-..|+..-+.++..+.-.|-++..+++.-++
T Consensus       661 k~rl~ee-l~ei~~~~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~  739 (1141)
T KOG0018|consen  661 KERLLEE-LKEIQKRRKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREG  739 (1141)
T ss_pred             HHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHH
Confidence            4444433 444555555666666777777777788888888888777777788888888887777666677777777777


Q ss_pred             hhhHHHhh
Q 001601          146 EVGLVEKS  153 (1046)
Q Consensus       146 el~~~~~~  153 (1046)
                      +...++++
T Consensus       740 ~~~~L~~~  747 (1141)
T KOG0018|consen  740 EMKELEER  747 (1141)
T ss_pred             HHHHHHHH
Confidence            77665553

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=95.34  E-value=11  Score=46.95  Aligned_cols=28  Identities=11%  Similarity=0.164  Sum_probs=20.1

Q ss_pred             HHHhhhchhheecchhchHHHHHHhHHHH
Q 001601           28 AHAQANSVLNFTVQWKDLEEHLDISMKSL   56 (1046)
Q Consensus        28 ~~~qas~~l~~~l~w~~le~h~~s~~~~~   56 (1046)
                      +.+-.+++|.+.+ -..|..|++......
T Consensus       171 l~~Ai~~LlGl~~-~~~L~~dl~~~~~~~  198 (650)
T TIGR03185       171 LKEAIEVLLGLDL-IDRLAGDLTNVLRRR  198 (650)
T ss_pred             HHHHHHHHhCcHH-HHHHHHHHHHHHHHH
Confidence            5556677888888 778888888765543

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=95.25  E-value=11  Score=46.35  Aligned_cols=38  Identities=26%  Similarity=0.284  Sum_probs=22.0

Q ss_pred             HhhhhhhhHHHHHHHHHHHHHHhHHHhHHHHHHHHHHH
Q 001601          334 ESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHL  371 (1046)
Q Consensus       334 ~e~e~k~~e~e~k~kEL~s~eK~~~~~~kEle~Kekel  371 (1046)
                      ...+....+++.-..++..+++++.+.-.|-...++++
T Consensus       364 ~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql  401 (546)
T PF07888_consen  364 HSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQL  401 (546)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555555666666666666666666555555

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=95.17  E-value=11  Score=46.16  Aligned_cols=22  Identities=18%  Similarity=0.373  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 001601          427 LEIKERKFEERVKEFELREKEI  448 (1046)
Q Consensus       427 lesKek~fe~rvKE~elKEkq~  448 (1046)
                      |..+.+++...+.-++.+=..+
T Consensus       436 l~~EkQeL~~yi~~Le~r~~~~  457 (546)
T PF07888_consen  436 LQEEKQELLEYIERLEQRLDKV  457 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            3344445555555555444444

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=94.96  E-value=14  Score=46.17  Aligned_cols=92  Identities=21%  Similarity=0.235  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001601          183 RKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLE  262 (1046)
Q Consensus       183 ~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie~~~kkle~k~kEl~~~~~~i~e~~kele~k  262 (1046)
                      ..++..|.....=|.+++..+...+..+.-++.||.-|-..++++.+---..+-+++.-++.|...+.        |--.
T Consensus       352 ~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~eleEmtk~k~~ke~eleeL~~~L~e~qk--------ll~e  423 (786)
T PF05483_consen  352 TELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSELEEMTKQKNNKEVELEELKKILAEKQK--------LLDE  423 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHH--------HHHH
Confidence            33333444444444445555555666666667777777777777665443333344444444443321        1122


Q ss_pred             HHHHHHHHHHHHHHHhhhhh
Q 001601          263 EEKLESLQRIVRLRENELDS  282 (1046)
Q Consensus       263 Ekqle~~~~~l~~r~k~l~~  282 (1046)
                      +++|+...-++..++.+|-+
T Consensus       424 kk~~eki~E~lq~~eqel~~  443 (786)
T PF05483_consen  424 KKQFEKIAEELQGTEQELTG  443 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555433

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=94.85  E-value=5  Score=44.49  Aligned_cols=94  Identities=20%  Similarity=0.204  Sum_probs=41.3

Q ss_pred             hhhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 001601          219 SKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYF  298 (1046)
Q Consensus       219 ~KeK~~e~~~k~ie~~~kkle~k~kEl~~~~~~i~e~~kele~kEkqle~~~~~l~~r~k~l~~~~~e~~~~e~e~e~~~  298 (1046)
                      ..-+.++..+.+++...+.++....+++..++++.....++.....+.+    ..+..- .-.+..+++..++.++...-
T Consensus        28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~----~~e~kl-~~v~~~~e~~aL~~E~~~ak  102 (239)
T COG1579          28 EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIK----RAEEKL-SAVKDERELRALNIEIQIAK  102 (239)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-hccccHHHHHHHHHHHHHHH
Confidence            3344444455555555555555555555433333333222222222222    221111 22344555666666665555


Q ss_pred             hhhhHHHHHHHHHHHHHHH
Q 001601          299 NDIELKEREFNGIRKCIEK  317 (1046)
Q Consensus       299 kel~~Ke~e~~~~~K~ie~  317 (1046)
                      ......++++...+..++.
T Consensus       103 ~r~~~le~el~~l~~~~~~  121 (239)
T COG1579         103 ERINSLEDELAELMEEIEK  121 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            5555555555444444433

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=94.84  E-value=19  Score=47.04  Aligned_cols=147  Identities=14%  Similarity=0.279  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhH
Q 001601          163 RLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKK  242 (1046)
Q Consensus       163 ~~~~~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie~~~kkle~k~  242 (1046)
                      .++..|.+.+.++.....+..++....+...+++.-.......+..++-.....+-.|++++-+|..-|....+--+.  
T Consensus       224 hvE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~--  301 (1141)
T KOG0018|consen  224 HVEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHL--  301 (1141)
T ss_pred             hhhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccc--
Confidence            366777888888888888888877777777777666554455555555445555555555555533333332222111  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH----HHHhhhhhHHHHHHHHHHHHHHH
Q 001601          243 KELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEM----KKYFNDIELKEREFNGIRKCIEK  317 (1046)
Q Consensus       243 kEl~~~~~~i~e~~kele~kEkqle~~~~~l~~r~k~l~~~~~e~~~~e~e~----e~~~kel~~Ke~e~~~~~K~ie~  317 (1046)
                            ..++.+..+.++..++........|+-.++++......-..++++|    ..+-.++.+++.++.+-..+.+.
T Consensus       302 ------k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~e  374 (1141)
T KOG0018|consen  302 ------KKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEE  374 (1141)
T ss_pred             ------hhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHH
Confidence                  1223344445555555555555555555555533333222223333    22333555666655444444433

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=94.70  E-value=21  Score=47.10  Aligned_cols=8  Identities=25%  Similarity=0.725  Sum_probs=4.8

Q ss_pred             HHHhhcCC
Q 001601          749 EWKTKMGV  756 (1046)
Q Consensus       749 ~WK~kl~~  756 (1046)
                      +|++-+.+
T Consensus      1121 ~~~~~~V~ 1128 (1317)
T KOG0612|consen 1121 DWKRIYVI 1128 (1317)
T ss_pred             chheeEEe
Confidence            38876533

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=94.59  E-value=7.4  Score=43.19  Aligned_cols=144  Identities=19%  Similarity=0.283  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhh--hhh
Q 001601          164 LENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKL--DCK  241 (1046)
Q Consensus       164 ~~~~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie~~~kkl--e~k  241 (1046)
                      +...+..+.-..+-..+.|++.+.+++...+.++..+..+..+++++..+..+|.       +.+..+..-+.++  -+.
T Consensus        15 lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~-------~~r~r~~~~e~kl~~v~~   87 (239)
T COG1579          15 LDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQ-------EIRERIKRAEEKLSAVKD   87 (239)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcccc
Confidence            3333444444444555566666666666666666655555555555544422221       1111111111111  111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 001601          242 KKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQE  321 (1046)
Q Consensus       242 ~kEl~~~~~~i~e~~kele~kEkqle~~~~~l~~r~k~l~~~~~e~~~~e~e~e~~~kel~~Ke~e~~~~~K~ie~r~kE  321 (1046)
                      .+              ++......+......+..-+.++.....+..++++++......+..-++.|.+.+..++..+.+
T Consensus        88 ~~--------------e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~  153 (239)
T COG1579          88 ER--------------ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAE  153 (239)
T ss_pred             HH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            12              2222222233333333333344444555555556666666666666667777777777766655


Q ss_pred             HHHHHHH
Q 001601          322 LTLKEKQ  328 (1046)
Q Consensus       322 Le~KEkq  328 (1046)
                      +......
T Consensus       154 i~e~~~~  160 (239)
T COG1579         154 IREEGQE  160 (239)
T ss_pred             HHHHHHH
Confidence            5444333

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=93.98  E-value=31  Score=46.12  Aligned_cols=58  Identities=16%  Similarity=0.125  Sum_probs=25.6

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001601          384 ECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFEL  443 (1046)
Q Consensus       384 elE~KEKele~~~k~~e~~~kele~Kekefeskek~leer~KelesKek~fe~rvKE~el  443 (1046)
                      .++.+.++++.....++.+.-+..  -..+.+.--.|.++..-+.+......|+.++++.
T Consensus      1012 ~l~~q~~e~~re~~~ld~Qi~~~~--~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~ 1069 (1294)
T KOG0962|consen 1012 NLERKLKELERELSELDKQILEAD--IKSVKEERVKLEEEREKLSSEKNLLLGEMKQYES 1069 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHH
Confidence            444555555544444433332222  1222233334444445555555555555555444

>PRK04863 mukB cell division protein MukB; Provisional

Probab=93.93  E-value=36  Score=46.64  Aligned_cols=37  Identities=16%  Similarity=0.184  Sum_probs=24.2

Q ss_pred             chhhhhhhHHHHHHHHHHHHHhhh-cccccccchHHHHHHHH
Q 001601          851 SDAKVKAMDFEVNALTFLIECFKE-NKLESSLLIENIKQRIV  891 (1046)
Q Consensus       851 ~~aq~~a~~kEl~aLraVIKcIee-~KLEse~p~~~L~kRI~  891 (1046)
                      +....+..+.++..++..|+=-+. +.    ++.+.+...|.
T Consensus      1209 p~et~e~Le~ei~rl~~~L~e~Er~L~----~s~eEVa~~l~ 1246 (1486)
T PRK04863       1209 PVEAIEQMEIELSRLTEELTSREQKLA----ISSESVANIIR 1246 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhC----CCHHHHHHHHH
Confidence            344556788888888888887776 33    55555544443

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=93.62  E-value=25  Score=43.78  Aligned_cols=62  Identities=24%  Similarity=0.274  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHH
Q 001601          165 ENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDE  226 (1046)
Q Consensus       165 ~~~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~e~  226 (1046)
                      ++...+-..++.....+++.+...|+....++++-...+..+..++++...+.+..++++.-
T Consensus       320 ~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l  381 (594)
T PF05667_consen  320 EDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKL  381 (594)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666667777777777777777777776666666666665555555555444444443

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=93.51  E-value=17  Score=41.52  Aligned_cols=31  Identities=29%  Similarity=0.321  Sum_probs=14.2

Q ss_pred             HHHhhhhhhhhhhHHHHHHHHHHhhhhhhhh
Q 001601          117 CELQLKEGELNLVKKSVEEWLEKLDLKMKEV  147 (1046)
Q Consensus       117 ~El~~k~~eL~~~~~~veE~~~e~~~Ke~el  147 (1046)
                      .++.++|-+||--.+..-+--.++..+..+|
T Consensus        37 ~~~~ekRdeln~kvrE~~e~~~elr~~rdei   67 (294)
T COG1340          37 SELAEKRDELNAKVRELREKAQELREERDEI   67 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555544444444444444444444

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=93.32  E-value=35  Score=44.51  Aligned_cols=52  Identities=29%  Similarity=0.366  Sum_probs=33.7

Q ss_pred             hhhhHHHHHHHHhHhhHHHHHhHHHHHHHHHhhhhhHHHHhhhhhhhhhhHHHHHHHHH
Q 001601           80 KESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLE  138 (1046)
Q Consensus        80 ~e~~l~l~e~~~ee~~~ele~Kek~l~~~r~~i~ec~~El~~k~~eL~~~~~~veE~~~  138 (1046)
                      ++-++.+++.++--.+-++++|-..+.       +|..||+-.+.++.-.++.++++.-
T Consensus       175 L~velAdle~kir~LrqElEEK~enll-------~lr~eLddleae~~klrqe~~e~l~  226 (1195)
T KOG4643|consen  175 LEVELADLEKKIRTLRQELEEKFENLL-------RLRNELDDLEAEISKLRQEIEEFLD  226 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555666666666666666654443       4447777777777777888887765

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=93.03  E-value=28  Score=42.57  Aligned_cols=40  Identities=23%  Similarity=0.395  Sum_probs=21.0

Q ss_pred             hhhHHHHHHHHhHhhHHHHHhHH-------HHHHHHHhhhhhHHHHh
Q 001601           81 ESDLVLAERRIKECNFELACKEK-------QLELVRKRIGECECELQ  120 (1046)
Q Consensus        81 e~~l~l~e~~~ee~~~ele~Kek-------~l~~~r~~i~ec~~El~  120 (1046)
                      +.+|...+.++..+...+..++.       +|+..++.|++...-|+
T Consensus        33 e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe   79 (522)
T PF05701_consen   33 ETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLE   79 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555566666666665553       44445555555444443

Several sequences in this family are described as being myosin heavy chain-like.

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=93.00  E-value=34  Score=43.57  Aligned_cols=104  Identities=16%  Similarity=0.142  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHH
Q 001601          164 LENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKK  243 (1046)
Q Consensus       164 ~~~~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie~~~kkle~k~k  243 (1046)
                      .+..|-.+..-+-.+|.++-.++.-|.+..-+++.-++.++.+.....++..+|-.|.-++-..-..+-..-..|.....
T Consensus       104 ~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~  183 (1265)
T KOG0976|consen  104 HESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNM  183 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHH
Confidence            44444455555556666666666666666666666666666666666555555555555554444444444444555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 001601          244 ELELTQTSIIELSLELHLEEEKLE  267 (1046)
Q Consensus       244 El~~~~~~i~e~~kele~kEkqle  267 (1046)
                      +|.-+...+.+..++++-+=++|.
T Consensus       184 q~~tkl~e~~~en~~le~k~~k~~  207 (1265)
T KOG0976|consen  184 EFQTKLAEANREKKALEEKLEKFK  207 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555444444444444444444443

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=92.99  E-value=24  Score=41.71  Aligned_cols=68  Identities=7%  Similarity=0.129  Sum_probs=34.0

Q ss_pred             hhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 001601          221 EKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLD  288 (1046)
Q Consensus       221 eK~~e~~~k~ie~~~kkle~k~kEl~~~~~~i~e~~kele~kEkqle~~~~~l~~r~k~l~~~~~e~~  288 (1046)
                      --|++.++.++..+.++|+...++|+-..+.+.-..++|...+-...-....|..|..++..+..++.
T Consensus       181 ~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~ia  248 (499)
T COG4372         181 ATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIA  248 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445555555555555555555555555555555555555555555555555554444433333

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=92.95  E-value=37  Score=43.84  Aligned_cols=78  Identities=24%  Similarity=0.305  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH------HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001601          257 LELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEM------KKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLK  330 (1046)
Q Consensus       257 kele~kEkqle~~~~~l~~r~k~l~~~~~e~~~~e~e~------e~~~kel~~Ke~e~~~~~K~ie~r~kELe~KEkql~  330 (1046)
                      |++|-|.-.+++..+--+.=+.++...+-.+..+++++      +.-|..|..|--+++++=|+.|..+-+|+..+...+
T Consensus       403 kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~E  482 (1243)
T KOG0971|consen  403 KELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNE  482 (1243)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444333333333333333344444445555      556666777767777777777777777766665555


Q ss_pred             HHHH
Q 001601          331 CVQE  334 (1046)
Q Consensus       331 ~~~~  334 (1046)
                      .+++
T Consensus       483 QL~E  486 (1243)
T KOG0971|consen  483 QLQE  486 (1243)
T ss_pred             HHHH
Confidence            4443

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=92.63  E-value=43  Score=43.75  Aligned_cols=76  Identities=21%  Similarity=0.246  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHH
Q 001601          164 LENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKK  243 (1046)
Q Consensus       164 ~~~~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie~~~kkle~k~k  243 (1046)
                      |++++++.+.++..+..+++..       ...+..+-..++.++.++.+....+|...+.-+.+++.|+.-.+-|.....
T Consensus       281 Le~~~~et~~~~s~~~~~~~e~-------~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~  353 (1072)
T KOG0979|consen  281 LESEKKETRSKISQKQRELNEA-------LAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQA  353 (1072)
T ss_pred             HHhHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4444444444444444443332       222333445566666777777777777777777777777777776666666


Q ss_pred             HHH
Q 001601          244 ELE  246 (1046)
Q Consensus       244 El~  246 (1046)
                      +|.
T Consensus       354 el~  356 (1072)
T KOG0979|consen  354 ELQ  356 (1072)
T ss_pred             hhh
Confidence            665

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=92.57  E-value=33  Score=42.27  Aligned_cols=77  Identities=18%  Similarity=0.172  Sum_probs=41.2

Q ss_pred             hHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhh
Q 001601          223 LYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDI  301 (1046)
Q Consensus       223 ~~e~~~k~ie~~~kkle~k~kEl~~~~~~i~e~~kele~kEkqle~~~~~l~~r~k~l~~~~~e~~~~e~e~e~~~kel  301 (1046)
                      ++......|..+...|.+-  ++......+.....+|+..-..++.....-..=.+........+.........+..++
T Consensus       257 ~i~~l~~~i~~~~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei  333 (569)
T PRK04778        257 EIQDLKEQIDENLALLEEL--DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEI  333 (569)
T ss_pred             HHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444322  4555556666666666666666666666655555555555555555555554444333

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=91.69  E-value=45  Score=41.95  Aligned_cols=176  Identities=15%  Similarity=0.183  Sum_probs=77.9

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHh-------HHHhHHHHHHHHHH
Q 001601          298 FNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKL-------IDKCSEELELKKKH  370 (1046)
Q Consensus       298 ~kel~~Ke~e~~~~~K~ie~r~kELe~KEkql~~~~~e~e~k~~e~e~k~kEL~s~eK~-------~~~~~kEle~Keke  370 (1046)
                      +|.|..|+++-+-+.+--...+++|.+-+..|+.+-..-+.-++...+-++.+.+.-++       ...++.+|+.+-.-
T Consensus       476 IkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a  555 (961)
T KOG4673|consen  476 IKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALA  555 (961)
T ss_pred             HHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            34455555554444444444555555555555555444444444444433333333333       22344455544444


Q ss_pred             HHHHHhHHHH-HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 001601          371 LCVIENSAAE-LSDECESNELELDLIQTMAIGYLKQLKEKEKQ----FHSLKEALDER----WQDLEIKERKFEERVKEF  441 (1046)
Q Consensus       371 l~~i~~~~~e-~~kelE~KEKele~~~k~~e~~~kele~Keke----feskek~leer----~KelesKek~fe~rvKE~  441 (1046)
                      +..-.+..+. +.+.--.|..+.-.+..++-..+.+|..+-..    .--++..|-+-    ++.|+.-+...++-...+
T Consensus       556 ~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v  635 (961)
T KOG4673|consen  556 EQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQV  635 (961)
T ss_pred             HHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4333333333 33444445555556666666666666554111    11112222222    222222222333222222


Q ss_pred             HH----HHHHHHHHHHHHHHhhhhhhhHHhhhhccc
Q 001601          442 EL----REKEIESIRKAVEDRSKNLELKEKKLSNNL  473 (1046)
Q Consensus       442 el----KEkq~e~~~~~~e~~~Ke~E~kE~~l~~~~  473 (1046)
                      -.    -=.|+++.+..+.++.-.-+--|.+++..+
T Consensus       636 ~~TTrPLlRQIE~lQ~tl~~~~tawereE~~l~~rL  671 (961)
T KOG4673|consen  636 PETTRPLLRQIEALQETLSKAATAWEREERSLNERL  671 (961)
T ss_pred             cccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhh
Confidence            21    224667777766665555444455555544

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=91.46  E-value=57  Score=42.64  Aligned_cols=93  Identities=14%  Similarity=0.179  Sum_probs=46.7

Q ss_pred             HhhhhhhhhhhHHHHHHHHHHhhhhhhhhhHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001601          119 LQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVM  198 (1046)
Q Consensus       119 l~~k~~eL~~~~~~veE~~~e~~~Ke~el~~~~~~~~k~~~d~~~~~~~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~  198 (1046)
                      +..-+.+|..+..++.+|..++..--.++.++..++.+---|+..+...+..+..++.+...+.-.+..+++-..+.|+.
T Consensus       673 ~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~  752 (1200)
T KOG0964|consen  673 VNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEE  752 (1200)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHH
Confidence            33334444444444444444443333344443333222222444455555666666666666666666666666666666


Q ss_pred             HHHhhhhhHHHHH
Q 001601          199 KEKHASSLQSLIE  211 (1046)
Q Consensus       199 ke~~l~~~~~eie  211 (1046)
                      =.+++..++...+
T Consensus       753 i~~~l~~~~~~~~  765 (1200)
T KOG0964|consen  753 IKTSLHKLESQSN  765 (1200)
T ss_pred             HHHHHHHHHHHHH
Confidence            5566555555543

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=90.93  E-value=21  Score=36.76  Aligned_cols=90  Identities=20%  Similarity=0.279  Sum_probs=66.7

Q ss_pred             HHhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHhHhhHHHHHhHHHHHHHHHhhhhhHHHHhhhhhhhhhhHHHHHHH
Q 001601           57 EKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEW  136 (1046)
Q Consensus        57 e~~~~~~~~k~~~le~r~k~~e~~e~~l~l~e~~~ee~~~ele~Kek~l~~~r~~i~ec~~El~~k~~eL~~~~~~veE~  136 (1046)
                      +.-.+++.++-..++.+   |++++.+|++.+...+....+.++.++++..++..|+.-..++.--+.+|.-++..-+..
T Consensus         9 ~~kLK~~~~e~dsle~~---v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L   85 (140)
T PF10473_consen    9 EEKLKESESEKDSLEDH---VESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENL   85 (140)
T ss_pred             HHHHHHHHHhHhhHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555666653   567888888888888888888888888888888888887777777777777777777766


Q ss_pred             HHHhhhhhhhhhH
Q 001601          137 LEKLDLKMKEVGL  149 (1046)
Q Consensus       137 ~~e~~~Ke~el~~  149 (1046)
                      ..++.-+.+.+.+
T Consensus        86 ~k~lq~~q~kv~e   98 (140)
T PF10473_consen   86 DKELQKKQEKVSE   98 (140)
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666666666

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=90.54  E-value=79  Score=42.65  Aligned_cols=109  Identities=22%  Similarity=0.311  Sum_probs=58.3

Q ss_pred             HHhHhhHHHHHhHHHHHHHHHhhhhhHHHHhhhhhhhhhhHHHHHHHHH---HhhhhhhhhhHHHhhh-------hhhhh
Q 001601           90 RIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLE---KLDLKMKEVGLVEKSN-------DKSLV  159 (1046)
Q Consensus        90 ~~ee~~~ele~Kek~l~~~r~~i~ec~~El~~k~~eL~~~~~~veE~~~---e~~~Ke~el~~~~~~~-------~k~~~  159 (1046)
                      +.+..+.-++.....+.+.+....||+.++..-...+.+++..+.|-.+   .+...+.+...+.+-+       .+ +.
T Consensus       217 ~~e~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i~ei~~~~~el~k~~~~~~~l~~e~~~l~~~~~~l~~~i~~-~~  295 (1294)
T KOG0962|consen  217 RAEVLRLNIHSGQRKIEKSKEEVSELENELGPIEAKIEEIEKSLKELEKLLKQVKLLDSEHKNLKKQISRLREKILK-IF  295 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cc
Confidence            4444555555666667777777778877777777777777777776555   2222233332222211       11 11


Q ss_pred             HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001601          160 DQRR--LENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMK  199 (1046)
Q Consensus       160 d~~~--~~~~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~k  199 (1046)
                      |.+.  +...+..+...+.+.+...+.+...+.....+..+.
T Consensus       296 ~~t~~~l~~~~~n~~~~~~~~~~~~~~~e~~~~~l~~e~~~l  337 (1294)
T KOG0962|consen  296 DGTDEELGELLSNFEERLEEMGEKLRELEREISDLNEERSSL  337 (1294)
T ss_pred             ccchHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            1111  223455555556666666666666555555443333

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=90.13  E-value=59  Score=40.61  Aligned_cols=27  Identities=11%  Similarity=0.197  Sum_probs=15.2

Q ss_pred             HHHhHHHhHHHHHHHHHHHHHHHhHHH
Q 001601          353 VEKLIDKCSEELELKKKHLCVIENSAA  379 (1046)
Q Consensus       353 ~eK~~~~~~kEle~Kekel~~i~~~~~  379 (1046)
                      .++.+.....++...+.+++.+..++.
T Consensus       389 ~~~~~~~~~~~~~~~e~el~~l~~~l~  415 (650)
T TIGR03185       389 LQDAKSQLLKELRELEEELAEVDKKIS  415 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445556666666666666655555443

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=89.78  E-value=69  Score=40.82  Aligned_cols=104  Identities=14%  Similarity=0.211  Sum_probs=56.2

Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------
Q 001601          212 DYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLREN-------------  278 (1046)
Q Consensus       212 e~~~ElE~KeK~~e~~~k~ie~~~kkle~k~kEl~~~~~~i~e~~kele~kEkqle~~~~~l~~r~k-------------  278 (1046)
                      .+--||....++.|+.+..+-...+.-+.-+.-+...+.++.+-.+.....|+||.+.++.-...+.             
T Consensus       457 ~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r  536 (697)
T PF09726_consen  457 SLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATR  536 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhcc
Confidence            3455666666667766666655555544444555566666666667777777777666654222111             


Q ss_pred             -hh-hhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 001601          279 -EL-DSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCI  315 (1046)
Q Consensus       279 -~l-~~~~~e~~~~e~e~e~~~kel~~Ke~e~~~~~K~i  315 (1046)
                       ++ +.+......|+.|++.+-.||..||.+....+.++
T Consensus       537 ~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~  575 (697)
T PF09726_consen  537 QECAESCRQRRRQLESELKKLRRELKQKEEQIRELESEL  575 (697)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             11 22222333355555555555555555554444444

; GO: 0016021 integral to membrane

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=88.74  E-value=93  Score=40.92  Aligned_cols=38  Identities=26%  Similarity=0.343  Sum_probs=19.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001601          279 ELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIE  316 (1046)
Q Consensus       279 ~l~~~~~e~~~~e~e~e~~~kel~~Ke~e~~~~~K~ie  316 (1046)
                      ++.....++.-++.++.++.+++++.-++=+-+++.|+
T Consensus       305 k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~  342 (1072)
T KOG0979|consen  305 KVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIE  342 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344445555566666666655555554433333333

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=88.64  E-value=46  Score=40.82  Aligned_cols=8  Identities=25%  Similarity=0.177  Sum_probs=3.6

Q ss_pred             hHHHHHhh
Q 001601          698 FVLDFIQH  705 (1046)
Q Consensus       698 LVLDaieg  705 (1046)
                      .|+++|..
T Consensus       392 ~V~~aI~~  399 (514)
T TIGR03319       392 EVVNAIAA  399 (514)
T ss_pred             HHHHHHHH
Confidence            34444443

>PRK04863 mukB cell division protein MukB; Provisional

Probab=88.47  E-value=1.2e+02  Score=41.91  Aligned_cols=21  Identities=19%  Similarity=0.025  Sum_probs=13.7

Q ss_pred             HHHHHHhHhccccccChHHHH
Q 001601          766 VFLQLLGTFELVASFNRVEIV  786 (1046)
Q Consensus       766 aFLqLLaafGL~seFd~dEL~  786 (1046)
                      .+-+=|..+|+-.+++.++-.
T Consensus      1038 E~eqe~~~~g~~~~~~~~~~~ 1058 (1486)
T PRK04863       1038 ELKQELQDLGVPADSGAEERA 1058 (1486)
T ss_pred             HHHHHHHHcCCCCCccHHHHH
Confidence            345667778888777765543

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=88.00  E-value=50  Score=36.97  Aligned_cols=47  Identities=17%  Similarity=0.248  Sum_probs=21.1

Q ss_pred             hhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001601          221 EKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLE  267 (1046)
Q Consensus       221 eK~~e~~~k~ie~~~kkle~k~kEl~~~~~~i~e~~kele~kEkqle  267 (1046)
                      ...+...+.++...+.++.+...++...+.....+...+...+.++.
T Consensus       208 ~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~  254 (312)
T PF00038_consen  208 SEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLD  254 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHH
Confidence            33344444444444444444444445444444444444444443333

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PRK12704 phosphodiesterase; Provisional

Probab=87.60  E-value=73  Score=39.19  Aligned_cols=10  Identities=20%  Similarity=0.302  Sum_probs=5.2

Q ss_pred             hHHHHHhhhh
Q 001601          698 FVLDFIQHWK  707 (1046)
Q Consensus       698 LVLDaieg~~  707 (1046)
                      .|.++|...+
T Consensus       398 ~v~~aI~~HH  407 (520)
T PRK12704        398 VVINAIAAHH  407 (520)
T ss_pred             HHHHHHHHcC
Confidence            4556555433

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=87.40  E-value=96  Score=39.57  Aligned_cols=41  Identities=22%  Similarity=0.406  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 001601          170 DFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDY  213 (1046)
Q Consensus       170 e~~~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~  213 (1046)
                      +|++.++.+..+++   .+|...+.||+.++...+.++.++.++
T Consensus       538 e~~e~~r~r~~~lE---~E~~~lr~elk~kee~~~~~e~~~~~l  578 (697)
T PF09726_consen  538 ECAESCRQRRRQLE---SELKKLRRELKQKEEQIRELESELQEL  578 (697)
T ss_pred             hhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666655444   566666666666666666666666544

; GO: 0016021 integral to membrane

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=87.39  E-value=46  Score=35.90  Aligned_cols=136  Identities=22%  Similarity=0.346  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHH
Q 001601          164 LENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKK  243 (1046)
Q Consensus       164 ~~~~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie~~~kkle~k~k  243 (1046)
                      |-..|.-+..++.+....++..+..+-.-...+..+..++..+...+..+..=  .+.|.+.++.+    ...++..-..
T Consensus        59 Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L--~~dknL~eRee----L~~kL~~~~~  132 (194)
T PF15619_consen   59 LPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKL--SEDKNLAEREE----LQRKLSQLEQ  132 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHcCCchhHHH----HHHHHHHHHH
Confidence            56677888888888888888888877777777777777777777776554221  33344444311    1233444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 001601          244 ELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREF  308 (1046)
Q Consensus       244 El~~~~~~i~e~~kele~kEkqle~~~~~l~~r~k~l~~~~~e~~~~e~e~e~~~kel~~Ke~e~  308 (1046)
                      .+......|..+.+++++-.+-|   .+.+....++....+.+...+..++..+-.-|.-|+++|
T Consensus       133 ~l~~~~~ki~~Lek~leL~~k~~---~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKer~L  194 (194)
T PF15619_consen  133 KLQEKEKKIQELEKQLELENKSF---RRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKEREL  194 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            45555555666666666655543   455666666777777788888888888877777777654

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=86.88  E-value=40  Score=34.63  Aligned_cols=40  Identities=23%  Similarity=0.444  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001601          418 EALDERWQDLEIKERKFEERVKEFELREKEIESIRKAVED  457 (1046)
Q Consensus       418 k~leer~KelesKek~fe~rvKE~elKEkq~e~~~~~~e~  457 (1046)
                      +...+++.+...+-..|+-+|+.++..-...+.....++.
T Consensus        97 ~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~  136 (143)
T PF12718_consen   97 KETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEE  136 (143)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            4445555556666666666666655555544444443333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=86.21  E-value=53  Score=35.43  Aligned_cols=185  Identities=17%  Similarity=0.245  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHhHhhHHHHHhHHHHHHHHHhhhhhHHHHhhhhhhhhhhHHHHHHHHHHhhhhhhhh
Q 001601           68 RLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEV  147 (1046)
Q Consensus        68 ~~le~r~k~~e~~e~~l~l~e~~~ee~~~ele~Kek~l~~~r~~i~ec~~El~~k~~eL~~~~~~veE~~~e~~~Ke~el  147 (1046)
                      |++-.|...+-.+.-++..+..+++++..|...-+.-----       .+.+.--++.=+.++++|--+..|+.+=...|
T Consensus         5 rvlSar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq-------~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~L   77 (194)
T PF15619_consen    5 RVLSARLHKIKELQNELAELQRKLQELRKENKTLKQLQKRQ-------EKALQKYEDTEAELPQLLQRHNEEVRVLRERL   77 (194)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            34444544444455555555555555554443322111111       13333333444455555655555444333333


Q ss_pred             hHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHhhhhhH
Q 001601          148 GLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASS---LQSLIEDYAEELESKEKLY  224 (1046)
Q Consensus       148 ~~~~~~~~k~~~d~~~~~~~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~---~~~eiee~~~ElE~KeK~~  224 (1046)
                      +-              ..+........++.++.++-.++..+....+-  ++.++|..   +...+..+...++.+++..
T Consensus        78 R~--------------~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L--~~dknL~eReeL~~kL~~~~~~l~~~~~ki  141 (194)
T PF15619_consen   78 RK--------------SQEQERELERKLKDKDEELLKTKDELKHLKKL--SEDKNLAEREELQRKLSQLEQKLQEKEKKI  141 (194)
T ss_pred             HH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHcCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            22              22333444445555566666666655554433  22233333   3344555566666666666


Q ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001601          225 DEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLREN  278 (1046)
Q Consensus       225 e~~~k~ie~~~kkle~k~kEl~~~~~~i~e~~kele~kEkqle~~~~~l~~r~k  278 (1046)
                      ....+.++...+-+   ...+..-..++.+...++.....++.....-|..+++
T Consensus       142 ~~Lek~leL~~k~~---~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKer  192 (194)
T PF15619_consen  142 QELEKQLELENKSF---RRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKER  192 (194)
T ss_pred             HHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            66666666666555   4455544444444444444444444444444444333

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=86.09  E-value=14  Score=40.71  Aligned_cols=103  Identities=19%  Similarity=0.221  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 001601          173 EQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSI  252 (1046)
Q Consensus       173 ~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie~~~kkle~k~kEl~~~~~~i  252 (1046)
                      .+|+.|-.+|..++..|-.....++.++.+|.....+++.|..|-..=..++-.+..+|..-+.-|.+-+.+-...++.|
T Consensus         4 ~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i   83 (230)
T PF10146_consen    4 KEIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKI   83 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666777777777777777777777777777777777666555555555555555555555555544455555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHH
Q 001601          253 IELSLELHLEEEKLESLQRI-VRL  275 (1046)
Q Consensus       253 ~e~~kele~kEkqle~~~~~-l~~  275 (1046)
                      ..+..++.-.+.+++..+++ +++
T Consensus        84 ~r~~eey~~Lk~~in~~R~e~lgl  107 (230)
T PF10146_consen   84 QRLYEEYKPLKDEINELRKEYLGL  107 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCC
Confidence            55555555555555555555 443

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.69  E-value=1.2e+02  Score=39.01  Aligned_cols=25  Identities=24%  Similarity=0.282  Sum_probs=15.9

Q ss_pred             hhhhhhccccccccccccccccccccc
Q 001601         1010 FDHIASNHLRVRANMGAGQTSNVTGNQ 1036 (1046)
Q Consensus      1010 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1046)
                      ||..|+|.=-  -+..-||.-||+|..
T Consensus      1060 YdY~AqndDE--LsF~kgdiI~Vlnkd 1084 (1118)
T KOG1029|consen 1060 YDYEAQNDDE--LSFKKGDIINVLNKD 1084 (1118)
T ss_pred             eccccCCccc--ccccCCCEEEecCCC
Confidence            4667777644  334567778887754

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=85.14  E-value=63  Score=35.27  Aligned_cols=63  Identities=22%  Similarity=0.284  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001601          257 LELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELT  323 (1046)
Q Consensus       257 kele~kEkqle~~~~~l~~r~k~l~~~~~e~~~~e~e~e~~~kel~~Ke~e~~~~~K~ie~r~kELe  323 (1046)
                      +.|-.++.+|+.-..-.+.-+.++.....++..    +..-.+.|..++..+......++..++.|.
T Consensus        88 rkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~----~~~nlk~l~~~ee~~~q~~d~~e~~ik~lt  150 (205)
T KOG1003|consen   88 RKLVIIEGELERAEERAEAAESQSEELEEDLRI----LDSNLKSLSAKEEKLEQKEEKYEEELKELT  150 (205)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----hHhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            667777777777776666666666665555553    344555555555555555555555444443

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=84.71  E-value=1e+02  Score=37.48  Aligned_cols=61  Identities=11%  Similarity=0.172  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 001601          285 EKLDAMKEEMKKYFNDIELKEREF-------NGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEE  345 (1046)
Q Consensus       285 ~e~~~~e~e~e~~~kel~~Ke~e~-------~~~~K~ie~r~kELe~KEkql~~~~~e~e~k~~e~e~  345 (1046)
                      .+++.|..+.+.++++|.--.-+.       .++..+++.+.++|+.+-.++++...+|.....++-.
T Consensus       368 e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i~~~~~~i~~  435 (622)
T COG5185         368 EQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQIGH  435 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHhh
Confidence            344444444444444443322222       2333344556777888888888888888776555444

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=83.96  E-value=79  Score=35.44  Aligned_cols=69  Identities=19%  Similarity=0.235  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001601          164 LENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSII  232 (1046)
Q Consensus       164 ~~~~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie  232 (1046)
                      +...++++...++.-......+...|....+++...--..-.++..|..+.+||....+.+++-+.++.
T Consensus        80 l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~  148 (312)
T PF00038_consen   80 LKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELR  148 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence            444555555555555555556666666666666655555555666666666666666666665444433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=83.95  E-value=64  Score=37.06  Aligned_cols=26  Identities=19%  Similarity=0.377  Sum_probs=12.2

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHhhh
Q 001601          211 EDYAEELESKEKLYDEIKKSIIQCET  236 (1046)
Q Consensus       211 ee~~~ElE~KeK~~e~~~k~ie~~~k  236 (1046)
                      .+....|+.+-..+..+..+++.|+.
T Consensus       183 ~~~~~~L~~e~~~Lk~~~~e~~~~D~  208 (325)
T PF08317_consen  183 RERKAELEEELENLKQLVEEIESCDQ  208 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcCH
Confidence            33344444444444455555555554

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=83.93  E-value=9.5  Score=48.00  Aligned_cols=39  Identities=23%  Similarity=0.291  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 001601          175 IELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDY  213 (1046)
Q Consensus       175 l~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~  213 (1046)
                      +...-++|+++.+.++....+..+=++.+..++....++
T Consensus       269 l~~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~E~~~~el  307 (722)
T PF05557_consen  269 LREELKHLRQSQENVELLEEEKRSLQRKLERLEELEEEL  307 (722)
T ss_dssp             ---------------------------------------
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344456778888888888888777666666666443333

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PRK09039 hypothetical protein; Validated

Probab=83.24  E-value=99  Score=36.04  Aligned_cols=47  Identities=21%  Similarity=0.324  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001601          172 CEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELE  218 (1046)
Q Consensus       172 ~~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE  218 (1046)
                      ..++..++.+|+.....|.....-|.........++..+.++...++
T Consensus        45 s~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~   91 (343)
T PRK09039         45 SREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLS   91 (343)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            34577778888888888877776666677777777777766655554

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=82.76  E-value=0.39  Score=61.29  Aligned_cols=57  Identities=18%  Similarity=0.040  Sum_probs=0.0

Q ss_pred             hhhhhhhHHHhhhhcCCchhhHHHhhhccCCCCC--------CCCCccchhhHHHHHhHHHHhhh
Q 001601          518 HDLVFGEISHTLTKACDPASLVLDAMEGFYPPHS--------REGDMEFDVSIIRRTCILLLEQL  574 (1046)
Q Consensus       518 ~~~lr~Ev~~ALr~a~DPAkLVLDaLEgFy~~~~--------k~gd~~~d~~~~RrsCilLLE~L  574 (1046)
                      ...-..|+..+|..+.+--....++..-+.....        ...+.+-.+...|++|--=+++|
T Consensus       466 LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~l  530 (859)
T PF01576_consen  466 LEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESL  530 (859)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHH
Confidence            3334455556666655554444444444433211        11122223445788877666666

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PRK00106 hypothetical protein; Provisional

Probab=82.46  E-value=46  Score=41.10  Aligned_cols=9  Identities=22%  Similarity=0.320  Sum_probs=5.0

Q ss_pred             HHHHHhhhh
Q 001601          699 VLDFIQHWK  707 (1046)
Q Consensus       699 VLDaieg~~  707 (1046)
                      |+++|...+
T Consensus       414 v~~aI~~HH  422 (535)
T PRK00106        414 VVNTIASHH  422 (535)
T ss_pred             HHHHHHHhC
Confidence            566665544

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=81.90  E-value=1.4e+02  Score=37.02  Aligned_cols=75  Identities=21%  Similarity=0.304  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH---HHHHHhhhhhHHHHHHHHHHhhhhh
Q 001601          164 LENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDY---AEELESKEKLYDEIKKSIIQCETKL  238 (1046)
Q Consensus       164 ~~~~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~---~~ElE~KeK~~e~~~k~ie~~~kkl  238 (1046)
                      .+..|++-..+....+.+++..+.++....+.+..+++++.+....+..+   ..+++.+-..+..+++.++..-+.|
T Consensus        97 ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~L  174 (546)
T KOG0977|consen   97 ARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRL  174 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            55577777777777788888888888888888888888888888777644   4666777777777766666665555

>PRK00106 hypothetical protein; Provisional

Probab=81.72  E-value=45  Score=41.17  Aligned_cols=9  Identities=33%  Similarity=0.357  Sum_probs=4.4

Q ss_pred             hHHHHhhhh
Q 001601          567 CILLLEQLS  575 (1046)
Q Consensus       567 CilLLE~L~  575 (1046)
                      --.-||.|.
T Consensus       281 Ar~~le~Li  289 (535)
T PRK00106        281 ARMTLESLI  289 (535)
T ss_pred             HHHHHHHHH
Confidence            334455554

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=81.07  E-value=48  Score=40.65  Aligned_cols=9  Identities=33%  Similarity=0.408  Sum_probs=4.6

Q ss_pred             hHHHHhhhh
Q 001601          567 CILLLEQLS  575 (1046)
Q Consensus       567 CilLLE~L~  575 (1046)
                      --+-||.|.
T Consensus       260 a~~~l~~li  268 (514)
T TIGR03319       260 ARMALEKLI  268 (514)
T ss_pred             HHHHHHHHH
Confidence            334456664

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=80.54  E-value=32  Score=42.70  Aligned_cols=41  Identities=12%  Similarity=0.069  Sum_probs=35.2

Q ss_pred             hheecchhchHHHHHHhHHHHHHhhhhhhHHHHHHHHHHHH
Q 001601           36 LNFTVQWKDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKE   76 (1046)
Q Consensus        36 l~~~l~w~~le~h~~s~~~~~e~~~~~~~~k~~~le~r~k~   76 (1046)
                      ++.|+-|+-=-||---+.+.--+-.+...+|.+.+|.+..+
T Consensus       330 ~~r~~~~~~~ddH~RDALAAA~kAY~~yk~kl~~vEr~~~~  370 (652)
T COG2433         330 ALRTLKISVSDDHERDALAAAYKAYLAYKPKLEKVERKLPE  370 (652)
T ss_pred             HHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            66788888888999888888888899999999988888774

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=80.42  E-value=76  Score=32.85  Aligned_cols=106  Identities=18%  Similarity=0.162  Sum_probs=67.7

Q ss_pred             chhchHHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHhHhhHHHHHhHHHHHHHHHhhhhhHHHHh
Q 001601           41 QWKDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQ  120 (1046)
Q Consensus        41 ~w~~le~h~~s~~~~~e~~~~~~~~k~~~le~r~k~~e~~e~~l~l~e~~~ee~~~ele~Kek~l~~~r~~i~ec~~El~  120 (1046)
                      .||..+.|-||....|+...+++..-..-.+.=..+.|...++..-++..++....++..-+-+|..++..-+...+++.
T Consensus        11 kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq   90 (140)
T PF10473_consen   11 KLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQ   90 (140)
T ss_pred             HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46667777777777776666666554444444445556666666666667777777776667777777766666667777


Q ss_pred             hhhhhhhhhHHHHHHHHHHhhhhhhh
Q 001601          121 LKEGELNLVKKSVEEWLEKLDLKMKE  146 (1046)
Q Consensus       121 ~k~~eL~~~~~~veE~~~e~~~Ke~e  146 (1046)
                      .+.+++..+......+..-+..++.+
T Consensus        91 ~~q~kv~eLE~~~~~~~~~l~~~E~e  116 (140)
T PF10473_consen   91 KKQEKVSELESLNSSLENLLQEKEQE  116 (140)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            77776666666666655555555444

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1046
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-20
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-19
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-19
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-14
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-13
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	9e-12
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-11
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-06
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	2e-10
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	6e-10
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	8e-09
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	1e-08
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	6e-08
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	1e-06
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	3e-06
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	1e-05
2xs1_A	704	Programmed cell death 6-interacting protein; prote	8e-08
2xs1_A	704	Programmed cell death 6-interacting protein; prote	1e-05
2xs1_A	704	Programmed cell death 6-interacting protein; prote	7e-04
1cii_A	602	Colicin IA; bacteriocin, ION channel formation, tr	2e-07
1cii_A	602	Colicin IA; bacteriocin, ION channel formation, tr	5e-06
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	2e-07
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	9e-06
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	2e-05
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	4e-05
2w00_A	1038	HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri	1e-04
2w00_A	1038	HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri	6e-04
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	2e-04
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	4e-04
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	5e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 95.3 bits (237), Expect = 6e-20
 Identities = 56/329 (17%), Positives = 145/329 (44%), Gaps = 2/329 (0%)

Query: 66   KIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGE 125
            +   +  + +E++  +     AE  +KE   +     ++  L+++++ + E EL  +  E
Sbjct: 855  QEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKL-QAETELYAEAEE 913

Query: 126  LNLVKKSVEEWLEKLDLKMKE-VGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRK 184
            + +   + ++ LE++  +M+  +   E+ + +   ++++++  + D  EQ+E +E   +K
Sbjct: 914  MRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQK 973

Query: 185  IRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKE 244
            ++      + ++   E     ++       +E +  E+   ++  ++ + E K     K 
Sbjct: 974  LQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKL 1033

Query: 245  LELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELK 304
                ++ I EL + L  EE+  + L++I R  E E     E++  ++ ++ +    +  K
Sbjct: 1034 KNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKK 1093

Query: 305  EREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEEL 364
            E E       +E  + +     K+++ ++  +   + + E ++      EK     SEEL
Sbjct: 1094 EEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEEL 1153

Query: 365  ELKKKHLCVIENSAAELSDECESNELELD 393
            E  K  L    ++ A   +   S+  + D
Sbjct: 1154 EALKTELEDTLDTTATQQELRGSDYKDDD 1182

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 93.0 bits (231), Expect = 3e-19
 Identities = 53/339 (15%), Positives = 138/339 (40%), Gaps = 7/339 (2%)

Query: 132  SVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEE 191
             V    E++  K +E+   ++   K+  + + LE      CE+  L ++ L+       E
Sbjct: 851  KVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAE 910

Query: 192  CEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTS 251
             E+  V        L+ ++ +    +E +E+   +++    + + ++   +++LE  + +
Sbjct: 911  AEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAA 970

Query: 252  IIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGI 311
              +L LE    + K++ ++  + + E++ +   ++   ++E +     ++  +E +   +
Sbjct: 971  RQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNL 1030

Query: 312  RKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHL 371
             K   K    +     +L+   +  E  R E E+ + +L      + +   EL+ +   L
Sbjct: 1031 TKLKNKHESMI----SELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAEL 1086

Query: 372  CVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKE 431
               +   A+  +E ++    L+   +     LK+++E E     L+E L+         E
Sbjct: 1087 ---KAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAE 1143

Query: 432  RKFEERVKEFELREKEIESIRKAVEDRSKNLELKEKKLS 470
            ++  +  +E E  + E+E        + +      K   
Sbjct: 1144 KQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDD 1182

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 92.2 bits (229), Expect = 5e-19
 Identities = 50/320 (15%), Positives = 125/320 (39%), Gaps = 10/320 (3%)

Query: 157  SLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEE 216
             L+   R E  ++   E+++  ++  +K  + ++E E++     +  + LQ  ++   E 
Sbjct: 848  PLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETEL 907

Query: 217  LESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLR 276
                E++   +     + E  L   +  +E  +    +L  E    ++++  L+  +   
Sbjct: 908  YAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEE 967

Query: 277  ENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESL 336
            E      + +      ++KK  +DI + E +         K ++E  L E+++  +  +L
Sbjct: 968  EAARQKLQLEKVTADGKIKKMEDDILIMEDQ-------NNKLTKERKLLEERVSDLTTNL 1020

Query: 337  EGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQ 396
                 + +         E +I +    L+ ++K    +E    +L  E      ++  +Q
Sbjct: 1021 AEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQ 1080

Query: 397  TMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIRKA-- 454
                    QL +KE++  +    L++         +K  E        ++++ES + A  
Sbjct: 1081 AQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARN 1140

Query: 455  -VEDRSKNLELKEKKLSNNL 473
              E + ++L  + + L   L
Sbjct: 1141 KAEKQKRDLSEELEALKTEL 1160

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 77.6 bits (191), Expect = 1e-14
 Identities = 53/356 (14%), Positives = 146/356 (41%), Gaps = 28/356 (7%)

Query: 87   AERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKE 146
             E  ++  + EL   +++ +     + E E +      E NL+++ ++   E        
Sbjct: 855  QEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEA--- 911

Query: 147  VGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSL 206
                E+   +    ++ LE ++ +   +IE +E+  +++++  ++ ++++          
Sbjct: 912  ----EEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQM---------- 957

Query: 207  QSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKL 266
              L E   EE  +++KL    +   +  + K+   + ++ + +    +L+ E  L EE++
Sbjct: 958  LDLEEQLEEEEAARQKL----QLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERV 1013

Query: 267  ESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKE 326
              L   +     E + K + L  +K + +   +++E++ ++    R+ +EK  ++L   E
Sbjct: 1014 SDLTTNL----AEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKL---E 1066

Query: 327  KQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECE 386
             +   + E +   + +  E + +L   E+ +      LE +            EL     
Sbjct: 1067 GESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHIS 1126

Query: 387  SNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFE 442
              + +L+  +       KQ ++  ++  +LK  L++       ++       K+ +
Sbjct: 1127 DLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDD 1182

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 59.1 bits (143), Expect = 7e-09
 Identities = 46/235 (19%), Positives = 100/235 (42%), Gaps = 18/235 (7%)

Query: 258  ELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEK 317
            E+  ++E+L+  +   +  E EL   E+K   + EE     N ++ K +    +    E+
Sbjct: 858  EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEK----NLLQEKLQAETELYAEAEE 913

Query: 318  RSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENS 377
                L  K+++L+ +   +E      EE+E     ++    K  +++   ++ L   E +
Sbjct: 914  MRVRLAAKKQELEEILHEME---ARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAA 970

Query: 378  AAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKER----- 432
              +L  E  + + ++  ++   +    Q  +  K+   L+E + +   +L  +E      
Sbjct: 971  RQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNL 1030

Query: 433  -----KFEERVKEFELREKEIESIRKAVEDRSKNLELKEKKLSNNLH-LQVKIEQ 481
                 K E  + E E+R K+ E  R+ +E   + LE +   L   +  LQ +I +
Sbjct: 1031 TKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAE 1085

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 57.2 bits (138), Expect = 3e-08
 Identities = 29/205 (14%), Positives = 89/205 (43%), Gaps = 5/205 (2%)

Query: 283  KEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNE 342
            +EE++ A  EE+++     +  E E   + +   +  +E  L +++L+   E        
Sbjct: 855  QEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEM 914

Query: 343  FEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGY 402
                  +   +E+++ +    +E +++    ++    ++  +    E +L+  +      
Sbjct: 915  RVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAA---- 970

Query: 403  LKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIRKAVEDRSKNL 462
             ++L+ ++       + +++    +E +  K  +  K  E R  ++ +     E+++KNL
Sbjct: 971  RQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNL 1030

Query: 463  ELKEKKLSNNLH-LQVKIEQPESLK 486
               + K  + +  L+V++++ E  +
Sbjct: 1031 TKLKNKHESMISELEVRLKKEEKSR 1055

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 43.3 bits (102), Expect = 5e-04
 Identities = 26/160 (16%), Positives = 74/160 (46%), Gaps = 18/160 (11%)

Query: 317 KRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIEN 376
           ++ +E+  K+++L+  +E  +    E +E E +   + +  +   E+L+ + +     E 
Sbjct: 854 RQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEE 913

Query: 377 SAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEE 436
               L+ +                   ++L+E   +  +  E  +ER Q L+ +++K ++
Sbjct: 914 MRVRLAAKK------------------QELEEILHEMEARIEEEEERSQQLQAEKKKMQQ 955

Query: 437 RVKEFELREKEIESIRKAVEDRSKNLELKEKKLSNNLHLQ 476
           ++ + E + +E E+ R+ ++      + K KK+ +++ + 
Sbjct: 956 QMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIM 995

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 81.4 bits (200), Expect = 1e-15
 Identities = 90/607 (14%), Positives = 199/607 (32%), Gaps = 168/607 (27%)

Query: 3   NCDNNKEELRLAESKKEI------------LRRSYD-LAHAQANSVLNFTVQWKDLEEHL 49
           +C + ++  +   SK+EI              R +  L   Q   V  F      +EE L
Sbjct: 34  DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF------VEEVL 87

Query: 50  DIS----MKSLEKQSND-ADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQ 104
            I+    M  ++ +    +      ++QR +     +   V A+  +         + + 
Sbjct: 88  RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ---VFAKYNV--------SRLQP 136

Query: 105 LELVRKRIGECECELQLKEGELNLVK------KSV--------EEWLEKLDLKMKEVGLV 150
              +R+ +      L+L+  +  L+       K+          +   K+D K+  + L 
Sbjct: 137 YLKLRQAL------LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190

Query: 151 EKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECE---KELVMKEKHASSL- 206
             ++ +++++   L+ L+         +      I+  I   +   + L+  + + + L 
Sbjct: 191 NCNSPETVLEM--LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248

Query: 207 ------------------QSLI-------EDYAEELESKEKLYDEIKKSIIQCETK---- 237
                             + L+        D+     +     D    ++   E K    
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308

Query: 238 --LDCKKKEL--ELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEK----LDA 289
             LDC+ ++L  E+  T+   LS+   + E   + L      +    D         L+ 
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSI---IAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365

Query: 290 MK-EEMKKYFNDI-------------------ELKEREFNGIRKCIEKRSQELTLKEKQL 329
           ++  E +K F+ +                   ++ + +   +   + K S    L EKQ 
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS----LVEKQP 421

Query: 330 KCVQESLEGCRNEFEEKENELISVEK-LIDK-------CSEELELKKK----------HL 371
           K    S+     E + K     ++ + ++D         S++L               HL
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481

Query: 372 CVIENSAAELSDECESNELELDLIQTMAIGYLKQ-LKEKEKQFHSLKEALDERWQDLEIK 430
             IE+   E         + LD        +L+Q ++     +++    L+   Q L+  
Sbjct: 482 KNIEH--PERMTLFR--MVFLDF------RFLEQKIRHDSTAWNASGSILNT-LQQLKFY 530

Query: 431 ERKFEERVKEFELREKEIES-IRKAVED--RSKNLELKEKKLSNNLHLQVKIEQPESLKG 487
           +    +   ++E     I   + K  E+   SK  +L          L++ +   +    
Sbjct: 531 KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL----------LRIALMAEDEAIF 580

Query: 488 NEGTKQL 494
            E  KQ+
Sbjct: 581 EEAHKQV 587

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.5 bits (143), Expect = 5e-09
 Identities = 94/582 (16%), Positives = 187/582 (32%), Gaps = 153/582 (26%)

Query: 386 ESNELEL---DLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKE-F 441
           E+ E +    D++      ++     K+ Q    K  L +   D  I  +         F
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQ-DMPKSILSKEEIDHIIMSKDAVSGTLRLF 68

Query: 442 E-LREKEIESIRKAVEDRSKNLELKEKKLSNNLHLQVKIEQPESLKGNEGTKQLSLQSCT 500
             L  K+ E ++K VE+    L +  K L + +  +               +Q S+ +  
Sbjct: 69  WTLLSKQEEMVQKFVEE---VLRINYKFLMSPIKTE--------------QRQPSMMTRM 111

Query: 501 MITGKNLQLLLNQHLQKHDLVFGEISHTLTKA---CDPAS-LVLDAMEGFYPPHSREGDM 556
            I  ++     NQ   K+++   +    L +A     PA  +++D + G        G  
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS-------G-- 162

Query: 557 EFDVSIIRRTCILLLEQLSSVTPEINPQVRDEAMKVAGEWKKKMRVAEDNSLEVLGFLHL 616
                   +T  + L+   S   +          K+   W   + +   NS E +     
Sbjct: 163 --------KTW-VALDVCLSYKVQCKM-----DFKIF--W---LNLKNCNSPETV----- 198

Query: 617 LAAYGLGPSFDGIELESLLDIVAQHRQTSKLRQSLGFAEKAHGLQCSTTREARSCLSLLN 676
                         LE L  ++ Q      +  +             T+R   S    L 
Sbjct: 199 --------------LEMLQKLLYQ------IDPNW------------TSRSDHSSNIKLR 226

Query: 677 KHDLGHNEVLQLLHLAPDP-AMFVLDFIQ---HWKSQGTGFEEDNVKCCILVLEKLKEVL 732
            H +   E+ +LL   P    + VL  +Q    W +    F   N+ C IL+  + K+V 
Sbjct: 227 IHSI-QAELRRLLKSKPYENCLLVLLNVQNAKAWNA----F---NLSCKILLTTRFKQVT 278

Query: 733 PIMNPRVKGEAMKLAVEWKTKMGVGTLNSLEVLVFLQLLGTFELVASFNRVEIVELLWTI 792
             ++         ++++  +     TL   EV           L+  +      +L    
Sbjct: 279 DFLSAATTTH---ISLDHHSM----TLTPDEVK---------SLLLKYLDCRPQDL---- 318

Query: 793 SEHKQAPETC----RALGFTDIVATIR-FICA---FKLTDIAKPEAIFKQYLDDNISDIH 844
                  E      R L    I  +IR  +     +K  +  K   I +  L+      +
Sbjct: 319 -----PREVLTTNPRRLSI--IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371

Query: 845 RKGNNS-----SDAKVKAMDFEV---NALTFLIECFKENKLES-SLLIENIKQRIVQLEM 895
           RK  +        A +  +   +   + +   +     NKL   SL+ +  K+  + +  
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV-VNKLHKYSLVEKQPKESTISIPS 430

Query: 896 AKADCRRHSTPAPSATIQLQLASRNNYNIGTSTPTNQPVPSH 937
              + +            L  +  ++YNI  +  ++  +P +
Sbjct: 431 IYLELKVK----LENEYALHRSIVDHYNIPKTFDSDDLIPPY 468

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 3e-07
 Identities = 59/323 (18%), Positives = 113/323 (34%), Gaps = 81/323 (25%)

Query: 5   DNNKEELRLAESKKEILR-----RSYDLAH-AQANSVLNFTVQWKDLEEHLDISMKSLEK 58
           D++   L   E K  +L      R  DL       +    ++  + + + L     + + 
Sbjct: 292 DHHSMTLTPDEVK-SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW-DNWKH 349

Query: 59  QSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELAC-------KEKQLELVRKR 111
            + D  + I         IES  + L  AE   ++    L+            L L+   
Sbjct: 350 VNCDKLTTI---------IESSLNVLEPAE--YRKMFDRLSVFPPSAHIPTILLSLIWFD 398

Query: 112 IGECECELQLKEGELNLVKKS-VEEWLEK---------LDLKMKEVGLVEKSNDKSLVDQ 161
           + + +  + + +    L K S VE+  ++         L+LK+K          +S+VD 
Sbjct: 399 VIKSDVMVVVNK----LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH--RSIVDH 452

Query: 162 RRL------ENLIKD-----FC-------EQIELKEK---------DLRKIRSSIEECEK 194
             +      ++LI       F        + IE  E+         D R +   I     
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512

Query: 195 ELVMKEKHASSLQSLI--EDYAEELESK-EKLYDEIKKSIIQCETKLDCKKKELELTQTS 251
                    ++LQ L   + Y  + + K E+L + I   + + E  L C K       T 
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK------YTD 566

Query: 252 IIELSL---ELHLEEEKLESLQR 271
           ++ ++L   +  + EE  + +QR
Sbjct: 567 LLRIALMAEDEAIFEEAHKQVQR 589

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 74.0 bits (182), Expect = 2e-13
 Identities = 41/251 (16%), Positives = 98/251 (39%), Gaps = 26/251 (10%)

Query: 161  QRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESK 220
             R+    ++D    ++        +R  +   + +++++E  +  +Q  +  +   +   
Sbjct: 831  VRKRYQCMRDATIALQ------ALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYH 884

Query: 221  EKLYDEIKKSIIQCETKLDCKKKELELT-----------------QTSIIELSLELHLEE 263
              L   +    +QC  +    K+EL+                   +  I++L  ++  + 
Sbjct: 885  RTLKAIVY---LQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQN 941

Query: 264  EKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELT 323
            ++ +SL   +   E    ++ EKL +  E ++    + +        +++ I K  +EL 
Sbjct: 942  KEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELH 1001

Query: 324  LKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSD 383
              + + K ++E  +  ++E E+  +EL     L+    EEL  +            E   
Sbjct: 1002 QTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKL 1061

Query: 384  ECESNELELDL 394
              E+ +LELDL
Sbjct: 1062 VEETKQLELDL 1072

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 68.6 bits (168), Expect = 9e-12
 Identities = 31/240 (12%), Positives = 85/240 (35%), Gaps = 9/240 (3%)

Query: 128  LVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRS 187
            L++  +     ++ L+  +  +++K     L        L      Q   +    ++   
Sbjct: 848  LLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELK 907

Query: 188  SIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELEL 247
             ++   + +   +K    L++ I     +++ + K Y  + + +   E     + ++L  
Sbjct: 908  KLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRS 967

Query: 248  TQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKERE 307
                +     E      ++ SLQ  +     EL   + +   ++E   KY ++ E    E
Sbjct: 968  DVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSE 1027

Query: 308  FNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELK 367
                   ++   +EL    +++    + +       E  E +L+   K ++    +  L+
Sbjct: 1028 LKEQNTLLKTEKEEL---NRRIHDQAKEIT------ETMEKKLVEETKQLELDLNDERLR 1078

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 67.1 bits (164), Expect = 3e-11
 Identities = 38/269 (14%), Positives = 98/269 (36%), Gaps = 21/269 (7%)

Query: 67   IRLLDQRAKEIESKESDLVL---AERRIKECNFELACKEKQLELVRKRIGECECELQLKE 123
             R+   R +    +++ + L       +    +++  +E +  +++K +      +    
Sbjct: 826  QRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHR 885

Query: 124  GELNLV--KKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKD 181
                +V  +      + K +LK  +  +  +S ++       LEN I     +I+ + K+
Sbjct: 886  TLKAIVYLQCCYRRMMAKRELKKLK--IEARSVERYKKLHIGLENKIMQLQRKIDEQNKE 943

Query: 182  LRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCK 241
             + +   +   E     + +    L+S +E      E  +   + +              
Sbjct: 944  YKSLLEKMNNLEITYSTETE---KLRSDVERLRMSEEEAKNATNRVLS-----------L 989

Query: 242  KKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDI 301
            ++E+   +  + +   E    EE  +  +       +EL  +   L   KEE+ +  +D 
Sbjct: 990  QEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049

Query: 302  ELKEREFNGIRKCIEKRSQELTLKEKQLK 330
              +  E    +   E +  EL L +++L+
Sbjct: 1050 AKEITETMEKKLVEETKQLELDLNDERLR 1078

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 60.1 bits (146), Expect = 3e-09
 Identities = 50/305 (16%), Positives = 115/305 (37%), Gaps = 19/305 (6%)

Query: 194  KELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSII 253
            K+ +   + A ++Q  +  +     +   L       IIQ   ++   +K  +  + + I
Sbjct: 785  KKYMRMRRAAITIQRYVRGHQARCYA-TFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATI 843

Query: 254  ELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRK 313
             L   L     + +    +   +   +        A     +     + L+         
Sbjct: 844  ALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQC-------- 895

Query: 314  CIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCV 373
                R      + K+LK    S+E  +      EN+   + +L  K  E+ +  K  L  
Sbjct: 896  --CYRRMMAKRELKKLKIEARSVERYKKLHIGLENK---IMQLQRKIDEQNKEYKSLLEK 950

Query: 374  IENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERK 433
            + N     S E E    +++ ++       ++ K    +  SL+E + +  ++L   + +
Sbjct: 951  MNNLEITYSTETEKLRSDVERLRMS----EEEAKNATNRVLSLQEEIAKLRKELHQTQTE 1006

Query: 434  FEERVKEFELREKEIESIRKAVEDRSKNLELKEKKLSNNLHLQVK-IEQPESLKGNEGTK 492
             +   +  +  + E E +   +++++  L+ ++++L+  +H Q K I +    K  E TK
Sbjct: 1007 KKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETK 1066

Query: 493  QLSLQ 497
            QL L 
Sbjct: 1067 QLELD 1071

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 51.6 bits (124), Expect = 1e-06
 Identities = 42/240 (17%), Positives = 83/240 (34%), Gaps = 8/240 (3%)

Query: 65   SKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEG 124
            + +R    R K          +  +  K     LA       L      +C     + + 
Sbjct: 847  ALLRGYLVRNKYQMMLREHKSIIIQ--KHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKR 904

Query: 125  ELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRK 184
            EL  +K           L +     + +   K     +  ++L++           +  K
Sbjct: 905  ELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEK 964

Query: 185  IRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKE 244
            +RS +E         +   + + SL E+ A+  +   +   E K      E   D  K E
Sbjct: 965  LRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTI----EEWADKYKHE 1020

Query: 245  LELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELK 304
             E   + + E +  L  E+E+L   +RI    +   ++ E+KL    ++++   ND  L+
Sbjct: 1021 TEQLVSELKEQNTLLKTEKEELN--RRIHDQAKEITETMEKKLVEETKQLELDLNDERLR 1078

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 62.0 bits (150), Expect = 2e-10
 Identities = 48/276 (17%), Positives = 109/276 (39%)

Query: 70  LDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLV 129
           +     + E+       AE   K         E +L  ++K++   E EL      L   
Sbjct: 8   MQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDA 67

Query: 130 KKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSI 189
           ++ +E   +K      +V  + +       +  R +  +    +++E  EK   +    +
Sbjct: 68  QEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGM 127

Query: 190 EECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQ 249
           +  E      E+     +  +++     E  ++ Y+E+ + ++  E+ L+  ++  EL++
Sbjct: 128 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 187

Query: 250 TSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFN 309
               EL  E+      L+SL+        + D  EE++  + +++K+     E  ER   
Sbjct: 188 GKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVT 247

Query: 310 GIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEE 345
            + K I+    EL  ++ + K + E L+   N+   
Sbjct: 248 KLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTS 283

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 60.4 bits (146), Expect = 6e-10
 Identities = 45/283 (15%), Positives = 120/283 (42%)

Query: 189 IEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELT 248
           ++  +K++ M +    +     ++   + ++ E    +++  ++  + KL   + EL+  
Sbjct: 1   MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY 60

Query: 249 QTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREF 308
             ++ +   +L L E+K    +  V      +   EE+LD  +E +      +E  E+  
Sbjct: 61  SEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAA 120

Query: 309 NGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKK 368
           +   + ++         E++++  +  L+  ++  E+ + +   V + +     +LE  +
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180

Query: 369 KHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLE 428
           +   + E   AEL +E ++    L  ++  A  Y ++  + E++   L + L E     E
Sbjct: 181 ERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240

Query: 429 IKERKFEERVKEFELREKEIESIRKAVEDRSKNLELKEKKLSN 471
             ER   +  K  +  E E+ + +   +  S+ L+     +++
Sbjct: 241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTS 283

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 57.4 bits (138), Expect = 8e-09
 Identities = 47/283 (16%), Positives = 119/283 (42%)

Query: 105 LELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRL 164
           ++ ++K++   + + +      +  +   +   ++      E+  ++K    +  +  + 
Sbjct: 1   MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY 60

Query: 165 ENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLY 224
              +KD  E++EL EK      + +    + + + E+     Q  +    ++LE  EK  
Sbjct: 61  SEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAA 120

Query: 225 DEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKE 284
           DE ++ +   E++    ++++E+ +  + E        + K E + R + + E++L+  E
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180

Query: 285 EKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFE 344
           E+ +  + +  +   +I+        +    EK SQ+    E+++K + + L+      E
Sbjct: 181 ERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240

Query: 345 EKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECES 387
             E  +  +EK ID   +EL  +K     I        ++  S
Sbjct: 241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTS 283

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 56.2 bits (135), Expect = 1e-08
 Identities = 43/279 (15%), Positives = 116/279 (41%)

Query: 150 VEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSL 209
           ++K      +D+    +   +     +  E   +++   +   +K+L   E         
Sbjct: 4   IKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEA 63

Query: 210 IEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESL 269
           ++D  E+LE  EK   + +  +     ++   ++EL+  Q  +     +L   E+  +  
Sbjct: 64  LKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADES 123

Query: 270 QRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQL 329
           +R +++ E+     EEK++  + ++K+  +  E  +R++  + + +     +L   E++ 
Sbjct: 124 ERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERA 183

Query: 330 KCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNE 389
           +  +        E +   N L S+E   +K S++ +  ++ + V+ +   E     E  E
Sbjct: 184 ELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAE 243

Query: 390 LELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLE 428
             +  ++        +L  ++ ++ ++ E LD    D+ 
Sbjct: 244 RSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMT 282

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 54.7 bits (131), Expect = 6e-08
 Identities = 50/276 (18%), Positives = 120/276 (43%), Gaps = 7/276 (2%)

Query: 43  KDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKE 102
           + L+   + ++   ++   D  +      Q   E+ S +  L   E  + + +  L   +
Sbjct: 9   QMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQ 68

Query: 103 KQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQR 162
           ++LEL  K+  + E ++      + L ++ ++   E+L   ++++   EK+ D+S    +
Sbjct: 69  EKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMK 128

Query: 163 RLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEK 222
            +E+  +   E++E++E  L++ +   E+ +++     +    ++S +E   E  E  E 
Sbjct: 129 VIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEG 188

Query: 223 LYDEIKKSIIQCETKLDCKK-------KELELTQTSIIELSLELHLEEEKLESLQRIVRL 275
              E+++ I      L   +       ++ +  +  I  LS +L   E + E  +R V  
Sbjct: 189 KCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTK 248

Query: 276 RENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGI 311
            E  +D  E++L A K + K    +++    +   I
Sbjct: 249 LEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 42/296 (14%), Positives = 121/296 (40%), Gaps = 14/296 (4%)

Query: 70  LDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLV 129
           +D   K+++  + D   A  R  E   +    E + + +   +   + +L+  E EL+  
Sbjct: 1   MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY 60

Query: 130 KKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSI 189
            +++++  EKL+L  K+                  E  +     +I+L E++L + +  +
Sbjct: 61  SEALKDAQEKLELAEKKA--------------TDAEADVASLNRRIQLFEEELDRAQERL 106

Query: 190 EECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQ 249
               ++L   EK A   +  ++      +  E+  +  +  + + +   +   ++ E   
Sbjct: 107 ATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVA 166

Query: 250 TSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFN 309
             ++ +  +L   EE+ E  +      E E+ +    L +++ + +KY    +  E E  
Sbjct: 167 RKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIK 226

Query: 310 GIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELE 365
            +   +++        E+ +  +++S++   +E   ++ +  ++ + +D    ++ 
Sbjct: 227 VLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMT 282

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 48.9 bits (116), Expect = 3e-06
 Identities = 38/250 (15%), Positives = 100/250 (40%)

Query: 41  QWKDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELAC 100
           + K LE+ L    K L+   ++ D     L    +++E  E     AE  +   N  +  
Sbjct: 35  RSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQL 94

Query: 101 KEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVD 160
            E++L+  ++R+     +L+  E   +  ++ ++    +     +++ + E    ++   
Sbjct: 95  FEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHI 154

Query: 161 QRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESK 220
               +   ++   ++ + E DL +     E  E +    E+   ++ + ++    + E  
Sbjct: 155 AEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKY 214

Query: 221 EKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENEL 280
            +  D+ ++ I     KL   +   E  + S+ +L   +   E++L + +   +    EL
Sbjct: 215 SQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEL 274

Query: 281 DSKEEKLDAM 290
           D     + ++
Sbjct: 275 DHALNDMTSI 284

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 47.3 bits (112), Expect = 1e-05
 Identities = 40/269 (14%), Positives = 114/269 (42%)

Query: 125 ELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRK 184
           ++ ++K   E  L++ D    +    E  + +   +   L+  +K   ++++   + L+ 
Sbjct: 7   KMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKD 66

Query: 185 IRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKE 244
            +  +E  EK+    E   +SL   I+ + EEL+  ++      + + + E   D  ++ 
Sbjct: 67  AQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERG 126

Query: 245 LELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELK 304
           +++ ++   +   ++ ++E +L+  + I    + + +    KL  ++ ++++     EL 
Sbjct: 127 MKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELS 186

Query: 305 EREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEEL 364
           E +   + + I+  +  L   E Q +   +  +    E +   ++L   E   +     +
Sbjct: 187 EGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSV 246

Query: 365 ELKKKHLCVIENSAAELSDECESNELELD 393
              +K +  +E+       + ++   ELD
Sbjct: 247 TKLEKSIDDLEDELYAQKLKYKAISEELD 275

>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704

 Score = 55.3 bits (132), Expect = 8e-08
 Identities = 58/430 (13%), Positives = 144/430 (33%), Gaps = 18/430 (4%)

Query: 57  EKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECE 116
           +    +  ++++   +  K + S+  + V  +    + N  LA  +K  + +        
Sbjct: 273 QYYFGEEIARLQHAAELIKTVASRYDEYVNVKDFSDKINRALAAAKKDNDFIYHDRVPDL 332

Query: 117 CELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIE 176
            +L        +    V   + +    + E  +            +R  +L+     Q+ 
Sbjct: 333 KDLDPIGKATLVKSTPVNVPISQKFTDLFEKMVPVSVQQSLAAYNQRKADLVNRSIAQMR 392

Query: 177 LKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAE-----ELESKEKLYDEIKKSI 231
                   + +S+       +      +  QS++           +++ ++L  E+ + +
Sbjct: 393 EATTLANGVLASLNL--PAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKELPELL 450

Query: 232 IQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLREN------ELDSKEE 285
            +    LD   + L+  + +  +L  +     ++  S +    LR         LD   +
Sbjct: 451 QRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFRTVLDKAVQ 510

Query: 286 KLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLK----EKQLKCVQESLEGCRN 341
               +KE  + + + I L  +    +   I   +   T++       LK +  +L+  + 
Sbjct: 511 ADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKK 570

Query: 342 EFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIG 401
           E E  EN+L SV   +         +   +     S  EL         ++        G
Sbjct: 571 EREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEG 630

Query: 402 YLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIRKAVEDRSKN 461
            LK ++   ++F  +K++ +E     E   +        F      ++   K   + ++ 
Sbjct: 631 LLKNIQVSHQEFSKMKQSNNEA-NLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEI 689

Query: 462 LELKEKKLSN 471
           L   + K S+
Sbjct: 690 LVRFQNKCSD 699

>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704

 Score = 48.8 bits (115), Expect = 1e-05
 Identities = 32/275 (11%), Positives = 97/275 (35%), Gaps = 10/275 (3%)

Query: 40  VQWKDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELA 99
           V  +   + +D  +K L +        +    +   E E+ ++DL    R   +  ++  
Sbjct: 430 VIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDL----RAKFKERWQRT 485

Query: 100 CKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVG----LVEKSND 155
              +  + +R         L         VK+  +   + + L  K        +  +N 
Sbjct: 486 PSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANP 545

Query: 156 KSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAE 215
              +    + N++K     ++  +K+   + + ++    ++  K   A +   +I + A 
Sbjct: 546 AKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEAL 605

Query: 216 ELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRL 275
            +   +++Y  +   + +   K +   K ++++     ++    +    + E L+ +   
Sbjct: 606 SVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATA 665

Query: 276 RE--NELDSKEEKLDAMKEEMKKYFNDIELKEREF 308
            +   EL +  ++      E+ +     + K  + 
Sbjct: 666 YDNFVELVANLKEGTKFYNELTEILVRFQNKCSDI 700

>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704

 Score = 42.6 bits (99), Expect = 7e-04
 Identities = 32/288 (11%), Positives = 83/288 (28%), Gaps = 19/288 (6%)

Query: 207 QSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKEL---ELTQTSIIELSLELHLEE 263
             L+     ++     L + +  S+       D     +    LT++  +     +   +
Sbjct: 381 ADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVD 440

Query: 264 EKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELK------EREFNGIRKCIEK 317
           + ++ L  +++     LD     LD  +          + +         +  +R     
Sbjct: 441 QLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTN 500

Query: 318 RSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENS 377
               L    +    V+E  +  R+           +   I   +    ++          
Sbjct: 501 FRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGS-------- 552

Query: 378 AAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEER 437
             E+ +  +S    LD ++    G    LK       S       +   +  +     E 
Sbjct: 553 --EVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTEL 610

Query: 438 VKEFELREKEIESIRKAVEDRSKNLELKEKKLSNNLHLQVKIEQPESL 485
            + +     +++   K  E   KN+++  ++ S       +    E +
Sbjct: 611 DRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEV 658

>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1 Length = 602

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 42/388 (10%), Positives = 119/388 (30%), Gaps = 12/388 (3%)

Query: 97  ELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDK 156
           E+   +  L   +K       E   +       ++  E  L+ L     +   + +   +
Sbjct: 54  EITAYKNTLSAQQKENENKRTEAGKRLSAAIAAREKDENTLKTLRAGNADAADITRQEFR 113

Query: 157 SLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEE 216
            L  + R         E        L      +      L +  + A SL    E   ++
Sbjct: 114 LLQAELREYGFRT---EIAGYDALRLHTESRMLFADADSLRISPREARSLIEQAEKRQKD 170

Query: 217 LESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLR 276
            ++ +K   ++     + +  LD +  ELE            L + + +   L       
Sbjct: 171 AQNADKKAADMLAEYERRKGILDTRLSELEK------NGGAALAVLDAQQARLLGQQTRN 224

Query: 277 ENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESL 336
           +  +     KL ++ E +    N +   E++    +   + ++     K        +S+
Sbjct: 225 DRAISEARNKLSSVTESLNTARNALTRAEQQLTQQKNTPDGKTIVSPEKFPGRSSTNDSI 284

Query: 337 EGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQ 396
               +       ++ +   + ++ +    L    L   +     L+D       +++  +
Sbjct: 285 VVSGDPRFAGTIKITTSAVIDNRANLNYLLSHSGL---DYKRNILNDRNPVVTEDVEGDK 341

Query: 397 TMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIRKAVE 456
            +    + +  +  ++    +  +      +         R  E +     + ++ K  E
Sbjct: 342 KIYNAEVAEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKE 401

Query: 457 DRSKNLELKEKKLSNNLHLQVKIEQPES 484
           +    L    +K++     Q +++  + 
Sbjct: 402 NIRNQLSGINQKIAEEKRKQDELKATKD 429

>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1 Length = 602

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 51/439 (11%), Positives = 122/439 (27%), Gaps = 5/439 (1%)

Query: 178 KEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETK 237
           +  D    RS IE+ +KE+   +   S+ Q   E+   E   +       ++        
Sbjct: 37  EWVDDSPTRSDIEKRDKEITAYKNTLSAQQKENENKRTEAGKRLSAAIAAREKDENTLKT 96

Query: 238 LDCKKKEL----ELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEE 293
           L     +           +     E     E        +      L +  + L     E
Sbjct: 97  LRAGNADAADITRQEFRLLQAELREYGFRTEIAGYDALRLHTESRMLFADADSLRISPRE 156

Query: 294 MKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRN-EFEEKENELIS 352
            +      E ++++     K       E   ++  L      LE          + +   
Sbjct: 157 ARSLIEQAEKRQKDAQNADKKAADMLAEYERRKGILDTRLSELEKNGGAALAVLDAQQAR 216

Query: 353 VEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQ 412
           +     +    +   +  L  +  S     +     E +L   +    G      EK   
Sbjct: 217 LLGQQTRNDRAISEARNKLSSVTESLNTARNALTRAEQQLTQQKNTPDGKTIVSPEKFPG 276

Query: 413 FHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIRKAVEDRSKNLELKEKKLSNN 472
             S  +++            K                     ++ +   L  +   ++ +
Sbjct: 277 RSSTNDSIVVSGDPRFAGTIKITTSAVIDNRANLNYLLSHSGLDYKRNILNDRNPVVTED 336

Query: 473 LHLQVKIEQPESLKGNEGTKQLSLQSCTMITGKNLQLLLNQHLQKHDLVFGEISHTLTKA 532
           +    KI   E  + ++  ++L      + + ++       +L          +  L   
Sbjct: 337 VEGDKKIYNAEVAEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNAL 396

Query: 533 CDPASLVLDAMEGFYPPHSREGDMEFDVSIIRRTCILLLEQLSSVTPEINPQVRDEAMKV 592
                 + + + G     + E   + ++   +       E L SV+ +   +    A ++
Sbjct: 397 LKEKENIRNQLSGINQKIAEEKRKQDELKATKDAINFTTEFLKSVSEKYGAKAEQLAREM 456

Query: 593 AGEWKKKMRVAEDNSLEVL 611
           AG+ K K     + +L+  
Sbjct: 457 AGQAKGKKIRNVEEALKTY 475

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863

 Score = 54.1 bits (129), Expect = 2e-07
 Identities = 51/481 (10%), Positives = 153/481 (31%), Gaps = 31/481 (6%)

Query: 22  RRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKE 81
             S+  A + A        +   +      + + +E     A   +  + +    +E++ 
Sbjct: 218 VSSFYHAFSGAQKAETAANRICKVLAVNQENEQLMEDYEKLASDLLEWIRRTIPWLENRA 277

Query: 82  SDLVLAERRIKECNFELACKEKQLELVRKRIGECEC----ELQLKEGELNLVKKSVEEWL 137
            +  +   + K  +F    +  +   V+++          + +L+         S  + +
Sbjct: 278 PENTMQAMQQKLEDFRDYRRLHKPPKVQEKCQLEINFNTLQTKLRLSNRPAFMPSEGKMV 337

Query: 138 EKLDLKMKEVGLVEKSNDKSLVD----QRRLENLIKDFCEQIELKEKDLRKIRSSIEECE 193
             ++     +   EK  ++ L++      RL++L + F ++  + E       + +++ +
Sbjct: 338 SDINNAWGGLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHESWTDGKEAMLQQKD 397

Query: 194 KELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSII 253
            E         +L    E +  +L + +   ++I     +           +      I 
Sbjct: 398 YET-ATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQKIC 456

Query: 254 E----LSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFN 309
           +    L        E LE  ++++   +       ++       M+    D++       
Sbjct: 457 DQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIVHT 516

Query: 310 --GIRKCIEKRSQ---ELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEEL 364
              I+       Q    L   +K+ + +           +     +           +E+
Sbjct: 517 IEEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEI 576

Query: 365 ELKKKHLCVIENSAAELSDE----CESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEAL 420
             K +H+  +     +   E     + NE         A      ++ K ++   +   +
Sbjct: 577 NGKWEHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQTKMEEIGRISIEM 636

Query: 421 DERWQDLEIKERKFEERVKEFELREKEIESIRKAVEDRSKNLELKEKKLSNNLHLQVKIE 480
               +D     R++E+ +  ++ +  ++E   +         +++E  + +N H    +E
Sbjct: 637 HGTLEDQLNHLRQYEKSIVNYKPKIDQLEGDHQ---------QIQEALIFDNKHTNYTME 687

Query: 481 Q 481
            
Sbjct: 688 H 688

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 49.1 bits (117), Expect = 9e-06
 Identities = 48/321 (14%), Positives = 113/321 (35%), Gaps = 46/321 (14%)

Query: 134  EEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECE 193
             E+   LDL+  +         ++ +    L  +     + +      L  I  +I E  
Sbjct: 1823 SEFTRNLDLENPQYIAPPVFIQEAEIMGNNLMAIPPSHRDAVV---SSLVYIHQTIGEAN 1879

Query: 194  KELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSII 253
              L+ ++   + +      Y + +     L +E              K+ +LE       
Sbjct: 1880 IRLLKRQGRQNYVTP--RHYLDFINQVVLLINE--------------KRDQLE------- 1916

Query: 254  ELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRK 313
            E  L L++  +KL   +  V+  +  L  K  +LD   E+  +    +   ++     +K
Sbjct: 1917 EEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQK 1976

Query: 314  CIEKRSQELTLKEKQLKCVQESLEGCRNEFE---EKENELISVEKLIDKCSEELELKKKH 370
               +   +L ++ K++   +        + E       E+  +E   ++   + +     
Sbjct: 1977 DARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVAT 2036

Query: 371  LCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALD---ERWQDL 427
            +  +E S A   +E  +   E + I+T +     ++K K  +  +L + L+    RW   
Sbjct: 2037 ITALEKSIATYKEEYATLIRETEQIKTES----SKVKNKVDRSIALLDNLNSERGRW--- 2089

Query: 428  EIKERKFEERVKEFELREKEI 448
                   E++ + F  +   +
Sbjct: 2090 -------EQQSENFNTQMSTV 2103

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 47.7 bits (114), Expect = 2e-05
 Identities = 24/208 (11%), Positives = 70/208 (33%), Gaps = 22/208 (10%)

Query: 220  KEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLE-----LHLEEEKLESLQRIVR 274
            K +   E++      +TKL   K+E  +    +    ++     L   E++     RI  
Sbjct: 819  KGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIEL 878

Query: 275  LRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQE 334
             R+ ++    +K + + ++++ +     +             +    +T  + +LK ++ 
Sbjct: 879  KRQKKIAVLLQKYNRILKKLENWATTKSVYLGS--------NETGDSITAVQAKLKNLEA 930

Query: 335  SLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDL 394
                C++   +  ++L     ++ + +E        L   E      + +    +   + 
Sbjct: 931  FDGECQSLEGQSNSDL---LSILAQLTELNYNGVPEL--TERKDTFFAQQWTGVKSSAET 985

Query: 395  IQTMAIGYLKQLKEKEKQFHSLKEALDE 422
             +      L    E+ ++   L      
Sbjct: 986  YKNT----LLAELERLQKIEDLHHHHHH 1009

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Length = 430

 Score = 46.2 bits (110), Expect = 4e-05
 Identities = 29/179 (16%), Positives = 70/179 (39%), Gaps = 12/179 (6%)

Query: 155 DKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYA 214
           D   V  +     +++  E I +K K+    +  +E+   +  ++        S    Y 
Sbjct: 122 DGKTVSYKDYSIFLEN--ENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYK 179

Query: 215 EELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVR 274
           +E E  ++  +++ KS  +          EL+  ++  +E+  +        E       
Sbjct: 180 KEYEELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDE-----AE 234

Query: 275 LRENELDSKEEKLDAMKEEMKKYFNDIELKERE-----FNGIRKCIEKRSQELTLKEKQ 328
            R   ++++ E+L A ++++   F  I+ K +E     F+ +   ++   +ELT     
Sbjct: 235 GRFEVINNETEQLKAEEKKILNQFLKIKKKRKELFEKTFDYVSDHLDAIYRELTKNPNS 293

>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* Length = 1038

 Score = 45.3 bits (107), Expect = 1e-04
 Identities = 38/257 (14%), Positives = 94/257 (36%), Gaps = 25/257 (9%)

Query: 61   NDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQ 120
                +  ++       +E  +++  + + +  E        +++++  R    +   + Q
Sbjct: 799  ATLKALQQIDLSDPVAVEKFKAEHYVDDEKFAELQTIRLPADRKIQDYRSAYNDIR-DWQ 857

Query: 121  LKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEK 180
             +E E    +KS  +W + +  ++  +           ++   +  LI +   Q + K +
Sbjct: 858  RREKEAEKKEKSTTDW-DDVVFEVDLL-------KSQEINLDYILGLIFEHNRQNKGKGE 909

Query: 181  DLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDC 240
             + +++  I      L  + K     + L+ D+ ++    + L D+   SII        
Sbjct: 910  MIEEVKRLIR---SSLGNRAK-----EGLVVDFIQQTN-LDDLPDK--ASIIDAFFTFAQ 958

Query: 241  KKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFND 300
            ++++ E        L  E +L E+  +   R    RE   ++  E  + + +        
Sbjct: 959  REQQREAE-----ALIKEENLNEDAAKRYIRTSLKREYATENGTELNETLPKLSPLNPQY 1013

Query: 301  IELKEREFNGIRKCIEK 317
               K+  F  I   IEK
Sbjct: 1014 KTKKQAVFQKIVSFIEK 1030

>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* Length = 1038

 Score = 43.0 bits (101), Expect = 6e-04
 Identities = 38/320 (11%), Positives = 109/320 (34%), Gaps = 7/320 (2%)

Query: 129  VKKSVEEWLEKLDLKMKEVGLVEKSNDKSL--VDQRRLENLIKDFCEQI-ELKEKDLRKI 185
            +++S  + +     K  +  ++EKS  + +            + F   + EL+++     
Sbjct: 708  LERSTIDAITLFGDKNTKNVVLEKSYTEYMEGFTDAATGEAKRGFMTVVSELEQRFPDPT 767

Query: 186  RSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKEL 245
                E+ +K+ V         ++++++Y E    K     ++   +   + K +    + 
Sbjct: 768  SIESEKEKKDFVKLFGEYLRAENILQNYDEFATLKALQQIDLSDPVAVEKFKAEHYVDDE 827

Query: 246  ELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKE 305
            +  +   I L  +  +++ +          R  +   K+EK     +++    + ++ +E
Sbjct: 828  KFAELQTIRLPADRKIQDYRSAYNDIRDWQRREKEAEKKEKSTTDWDDVVFEVDLLKSQE 887

Query: 306  REFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKE--NELISVEKLIDKCSEE 363
               + I   I + +++   K + ++ V+  +        ++    + I    L D   + 
Sbjct: 888  INLDYILGLIFEHNRQNKGKGEMIEEVKRLIRSSLGNRAKEGLVVDFIQQTNLDDLPDKA 947

Query: 364  LELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLK--QLKEKEKQFHSLKEALD 421
              +             E     +   L  D  +      LK     E   + +     L 
Sbjct: 948  SIIDAFFTFAQREQQREAEALIKEENLNEDAAKRYIRTSLKREYATENGTELNETLPKLS 1007

Query: 422  ERWQDLEIKERKFEERVKEF 441
                  + K++   +++  F
Sbjct: 1008 PLNPQYKTKKQAVFQKIVSF 1027

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Length = 256

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 17/157 (10%), Positives = 59/157 (37%), Gaps = 5/157 (3%)

Query: 174 QIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQ 233
           +I   +K++  +   I E  K+L        +    I +  EE  + +    + ++++  
Sbjct: 12  EISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQD 71

Query: 234 CETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEE 293
              K+   +K++   ++       EL     + +  +        E+++ + ++    E+
Sbjct: 72  TNAKIASIQKKMSEIKSER-----ELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEK 126

Query: 294 MKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLK 330
            +    ++   E+    +   +E   + +   ++ + 
Sbjct: 127 QEDLKKEMLELEKLALELESLVENEVKNIKETQQIIF 163

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Length = 256

 Score = 42.4 bits (99), Expect = 4e-04
 Identities = 31/185 (16%), Positives = 78/185 (42%), Gaps = 7/185 (3%)

Query: 96  FELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSND 155
            E++  +K+++ +   I E   +L     +     K++    E+      +V   E++  
Sbjct: 11  IEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQ 70

Query: 156 KSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAE 215
            +      ++  + +        E++LR +    +  ++      +   +LQ+ I+  +E
Sbjct: 71  DTNAKIASIQKKMSE-----IKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSE 125

Query: 216 ELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELS--LELHLEEEKLESLQRIV 273
           + E  +K   E++K  ++ E+ ++ + K ++ TQ  I +    L    E +     +RI 
Sbjct: 126 KQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEPKIYSFYERIR 185

Query: 274 RLREN 278
           R  +N
Sbjct: 186 RWAKN 190

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592

 Score = 43.0 bits (100), Expect = 5e-04
 Identities = 39/244 (15%), Positives = 89/244 (36%), Gaps = 4/244 (1%)

Query: 258 ELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEK 317
           EL       E     V +R +  D        +  +++K  +D   + +E +   +C   
Sbjct: 352 ELLDLHRDSEREAIEVFIRSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEAS-SDRCSGL 410

Query: 318 RSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENS 377
                +  E+++K    S  G    F +K  +L        +   +    ++ L     S
Sbjct: 411 LQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQ---AEEILQTYLKS 467

Query: 378 AAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEER 437
              ++D     +  L   +        + +  +     L E   +  Q +E KER ++E 
Sbjct: 468 KESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEH 527

Query: 438 VKEFELREKEIESIRKAVEDRSKNLELKEKKLSNNLHLQVKIEQPESLKGNEGTKQLSLQ 497
           +K+   + +         ++R+  L+L+E++       Q +    ++   +  TK    +
Sbjct: 528 LKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRRRK 587

Query: 498 SCTM 501
           +CT+
Sbjct: 588 ACTI 591

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1046
d1f5na1	300	a.114.1.1 (A:284-583) Interferon-induced guanylate	0.003

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (88), Expect = 0.003
 Identities = 36/224 (16%), Positives = 78/224 (34%), Gaps = 4/224 (1%)

Query: 258 ELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEK 317
           EL       E     V +R +  D        +  +++K  +D   K+ +     +C   
Sbjct: 69  ELLDLHRDSEREAIEVFIRSSFKDVDHLFQKELAAQLEKKRDDF-CKQNQEASSDRCSGL 127

Query: 318 RSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENS 377
                +  E+++K    S  G    F +K  +L        +   + E   + L     S
Sbjct: 128 LQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAE---EILQTYLKS 184

Query: 378 AAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEER 437
              ++D     +  L   +        + +  +     L E   +  Q +E KER ++E 
Sbjct: 185 KESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEH 244

Query: 438 VKEFELREKEIESIRKAVEDRSKNLELKEKKLSNNLHLQVKIEQ 481
           +K+   + +         ++R+  L+L+E++       Q +   
Sbjct: 245 LKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRI 288

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00