Citrus Sinensis ID: 001607
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1045 | 2.2.26 [Sep-21-2011] | |||||||
| Q7TPQ3 | 1674 | E3 ubiquitin-protein liga | yes | no | 0.400 | 0.250 | 0.391 | 5e-87 | |
| Q149N8 | 1683 | E3 ubiquitin-protein liga | yes | no | 0.400 | 0.248 | 0.391 | 7e-87 | |
| Q9FNI6 | 1029 | Putative SWI/SNF-related | no | no | 0.232 | 0.236 | 0.317 | 5e-35 | |
| Q9FIY7 | 1277 | Putative SWI/SNF-related | no | no | 0.232 | 0.190 | 0.316 | 1e-32 | |
| Q6PCN7 | 1003 | Helicase-like transcripti | no | no | 0.269 | 0.281 | 0.307 | 6e-31 | |
| Q9UTL9 | 1375 | Uncharacterized ATP-depen | yes | no | 0.306 | 0.232 | 0.307 | 6e-29 | |
| Q9FF61 | 881 | Putative SWI/SNF-related | no | no | 0.260 | 0.308 | 0.295 | 8e-28 | |
| Q95216 | 1005 | Helicase-like transcripti | no | no | 0.234 | 0.243 | 0.307 | 1e-27 | |
| Q14527 | 1009 | Helicase-like transcripti | no | no | 0.227 | 0.235 | 0.3 | 5e-27 | |
| Q4PGG5 | 1387 | DNA repair protein RAD5 O | N/A | no | 0.397 | 0.299 | 0.244 | 2e-26 |
| >sp|Q7TPQ3|SHPRH_MOUSE E3 ubiquitin-protein ligase SHPRH OS=Mus musculus GN=Shprh PE=1 SV=1 | Back alignment and function desciption |
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Score = 323 bits (828), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 185/472 (39%), Positives = 250/472 (52%), Gaps = 53/472 (11%)
Query: 136 RVECICGAVSE-SRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMT 194
R ECICG + K + VQC C WQHA CV Y + K + +
Sbjct: 649 RFECICGEFDQIGHKPR---VQCLKCHLWQHAKCVNYEEKNLKVKPFY------------ 693
Query: 195 NIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIY 254
C C +E PV+T ATLI+ P+ I QW EI RH R SL+ +Y
Sbjct: 694 ----------CPHCLVAME----PVSTRATLIISPSSICHQWVDEINRHVRSSSLRVLVY 739
Query: 255 EGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG--DRRFMRFQKRYPV 312
+G + L DIV+ TYDVL+ +L++ + H D R +R QKRY
Sbjct: 740 QGVKKHGFLQPHF-----LAEQDIVIITYDVLRSELNYVNIPHSNSEDGRRLRNQKRYMA 794
Query: 313 IPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLR 372
IP+ L + WWRICLDEAQMVE A EMA RL +RWCI+GTP+QR L+DL+GL+
Sbjct: 795 IPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVV 854
Query: 373 FLKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEEC 432
FL P+ + WWI ++ PY + + + F +IM RS+K V D++Q+PPQ E
Sbjct: 855 FLGIEPYCVKHWWIRLLYHPYCKKNP---QHLYSFIAKIMWRSAKKDVIDQIQIPPQTEE 911
Query: 433 VSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEA 492
+ WL FSP+E HFY QHE C A ++++ D LK + +
Sbjct: 912 MHWLHFSPVERHFYHRQHEVCCQDAIVKLRKISDWALKLSS-------------LDRRTV 958
Query: 493 AKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMAL 552
+ +L LL+LRQACCHPQ LQ+S ++M+E+L L K E EEA R+LV AL
Sbjct: 959 SSILYPLLRLRQACCHPQAVRGEFLPLQKSTMTMEELLTSLQKKCGTECEEAHRQLVCAL 1018
Query: 553 NGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNLTEIL 604
NGLAGI +I+ + A LY+E + EEH + D L +H HNL E+L
Sbjct: 1019 NGLAGIHIIKGEYALAAELYREVLRSSEEHKGKLKTDSLQRLHATHNLMELL 1070
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E3 ubiquitin-protein ligase involved in DNA repair. Upon genotoxic stress, accepts ubiquitin from the UBE2N-UBE2V2 E2 complex and transfers it to 'Lys-164' of PCNA which had been monoubiquitinated by UBE2A/B-RAD18, promoting the formation of non-canonical poly-ubiquitin chains linked through 'Lys-63'. Mus musculus (taxid: 10090) EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: - |
| >sp|Q149N8|SHPRH_HUMAN E3 ubiquitin-protein ligase SHPRH OS=Homo sapiens GN=SHPRH PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9FNI6|SM3L2_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 OS=Arabidopsis thaliana GN=At5g22750 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9FIY7|SM3L3_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 OS=Arabidopsis thaliana GN=At5g43530 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q6PCN7|HLTF_MOUSE Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9UTL9|YIV5_SCHPO Uncharacterized ATP-dependent helicase C144.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC144.05 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q9FF61|SM3L1_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 OS=Arabidopsis thaliana GN=At5g05130 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q95216|HLTF_RABIT Helicase-like transcription factor OS=Oryctolagus cuniculus GN=HLTF PE=1 SV=1 | Back alignment and function description |
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| >sp|Q14527|HLTF_HUMAN Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1 SV=2 | Back alignment and function description |
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| >sp|Q4PGG5|RAD5_USTMA DNA repair protein RAD5 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=RAD5 PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1045 | ||||||
| 224127888 | 1320 | chromatin remodeling complex subunit [Po | 0.987 | 0.781 | 0.711 | 0.0 | |
| 359486454 | 1704 | PREDICTED: E3 ubiquitin-protein ligase S | 0.984 | 0.603 | 0.682 | 0.0 | |
| 297736470 | 1717 | unnamed protein product [Vitis vinifera] | 0.968 | 0.589 | 0.643 | 0.0 | |
| 449499151 | 1520 | PREDICTED: LOW QUALITY PROTEIN: E3 ubiqu | 0.993 | 0.682 | 0.641 | 0.0 | |
| 449441236 | 1520 | PREDICTED: E3 ubiquitin-protein ligase S | 0.993 | 0.682 | 0.641 | 0.0 | |
| 240254615 | 1664 | RING-finger, DEAD-like helicase, PHD and | 0.974 | 0.611 | 0.621 | 0.0 | |
| 255559737 | 1588 | snf2 histone linker phd ring helicase, p | 0.796 | 0.523 | 0.736 | 0.0 | |
| 297827713 | 1635 | SNF2 domain-containing protein [Arabidop | 0.948 | 0.606 | 0.618 | 0.0 | |
| 357490295 | 1764 | ATP-dependent helicase, putative [Medica | 0.986 | 0.584 | 0.591 | 0.0 | |
| 356500801 | 1600 | PREDICTED: E3 ubiquitin-protein ligase S | 0.922 | 0.602 | 0.608 | 0.0 |
| >gi|224127888|ref|XP_002329202.1| chromatin remodeling complex subunit [Populus trichocarpa] gi|222870983|gb|EEF08114.1| chromatin remodeling complex subunit [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 1529 bits (3958), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 743/1044 (71%), Positives = 861/1044 (82%), Gaps = 12/1044 (1%)
Query: 1 MLEEDLPDLLPLLRPYQRRAAYWMVQREKGDSASSSERERSQFFSPLCMPMDFLDTYSTL 60
MLE+DLPDLLP LRPYQRRAA+WMVQ+EKG+S SS +ERSQFFSPLCMP+DFLDT S +
Sbjct: 283 MLEDDLPDLLPTLRPYQRRAAHWMVQQEKGES--SSVKERSQFFSPLCMPVDFLDTCSKM 340
Query: 61 FYNPFSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQ 120
FYNPFSG++S P+++ YV GGILADEMGLGKTVELLACI AHRK SDD + Q
Sbjct: 341 FYNPFSGNVSFHPEFSPPYVSGGILADEMGLGKTVELLACILAHRKSTSDDGSVVAPTWQ 400
Query: 121 VTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRS 180
T +QK+NL+RLKRERVEC+CGAVS+S KY+GLWVQCDICDAWQHADCVGYSPRGKK+ S
Sbjct: 401 NTGNQKINLKRLKRERVECVCGAVSDSYKYRGLWVQCDICDAWQHADCVGYSPRGKKKMS 460
Query: 181 TFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEI 240
+ +KH R K + V RDGEH+CQ C ELIE D+P+ATGATLIVCPAPIL QW +EI
Sbjct: 461 VDDEQKH-RNKTTISYVERDGEHVCQMCSELIEVADTPIATGATLIVCPAPILPQWHSEI 519
Query: 241 TRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 300
TRHTRPGSLKT +YEG R++SLS+T ++DI +LV ADIVLTTYDVLKEDL HDSDRH GD
Sbjct: 520 TRHTRPGSLKTYVYEGVRDTSLSNTFVVDIGQLVNADIVLTTYDVLKEDLLHDSDRHGGD 579
Query: 301 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPI 360
R +RFQKRYPV PT+LTRIFWWR+CLDEAQMVESNAAAATEMALRL KHRWCITGTPI
Sbjct: 580 RHILRFQKRYPVTPTILTRIFWWRVCLDEAQMVESNAAAATEMALRLSTKHRWCITGTPI 639
Query: 361 QRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHV 420
QRKLDDLYGLLRFLK+SPF++SRWWI+VIRDPYE D AMEFTHKFFK+IM RSSK+HV
Sbjct: 640 QRKLDDLYGLLRFLKASPFNVSRWWIDVIRDPYERRDADAMEFTHKFFKQIMWRSSKIHV 699
Query: 421 SDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSD 480
+DELQLPPQEECVSWLTFS IE+HFYQ QHETCV YAREVI KD+++KR VPG S+D
Sbjct: 700 ADELQLPPQEECVSWLTFSAIEKHFYQMQHETCVSYAREVIGSFKDDVVKRKVPGCVSTD 759
Query: 481 ALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIE 540
A +P+ITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSP++M+EILMV +GK KIE
Sbjct: 760 ASTDPLITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVFVGKMKIE 819
Query: 541 GEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNL 600
GEEALRKLV+ALN LAGIA++E+N QAVSLYKEA+A+ EEH EDFRLDPLLNIH+HHNL
Sbjct: 820 GEEALRKLVVALNALAGIAILEQNFPQAVSLYKEALALSEEHLEDFRLDPLLNIHIHHNL 879
Query: 601 TEILPMVANCATELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSREENSDFT-DAE 659
+IL +V + +TE+ N Q G SEKA KI+ ETCD N K Q+ S E+SDFT DA
Sbjct: 880 ADILALVMDHSTEVPSNGQQLHGNSEKASKINKSETCDLNDAKKQKAS-GEDSDFTIDA- 937
Query: 660 DPSGHLSDLSENGFNGDRKSDCC--VSSSSFDDASLITVCENLKQKYLSGFSVKLSVAQQ 717
G+ DLSEN G++K + +SS+SF L T CEN KQKYLS FS KLS AQ
Sbjct: 938 ---GNSLDLSENCSVGNKKGNNNHDMSSTSFSTQYLRTACENFKQKYLSVFSSKLSAAQL 994
Query: 718 EFRKSYMQVCNALDDREKQYSAWWLEALHHAEGNKDFSAELIRKIEEAISGSLNKSRALR 777
+F KSY QVCNA +R+ ++ WWL+AL+HAE NKD + ELIRKIEEA+SG+LN SR+ R
Sbjct: 995 DFNKSYTQVCNAFGERKNLHTVWWLDALNHAEQNKDSTGELIRKIEEAVSGTLNNSRSSR 1054
Query: 778 TASRYRSISGLTYHIQSSLDQLEASRKTLLDRLLEIDQTMEKPKEEDMDRMRHCRICYGV 837
ASR RSI+GL YHI + LDQLEASR+TLLDR+LEIDQTM PKEED++R+RHCRIC +
Sbjct: 1055 IASRLRSITGLKYHIHTHLDQLEASRQTLLDRILEIDQTMANPKEEDIERVRHCRICQAI 1114
Query: 838 GDGPICVHCELDESFQDYEARLFRLKKSQGD-IASAEEAVDLQKKNSSLNRFYWYLSQPN 896
DGP CVHCEL+ESFQ+YEARLFRL K G I SAEEAV+LQK+NS NR+YW L +
Sbjct: 1115 DDGPTCVHCELEESFQEYEARLFRLNKLHGGIITSAEEAVNLQKRNSERNRYYWNLDRQK 1174
Query: 897 KNSTSSSVGNEEIKRRDVRETVVVSKSPSELEVILGVIKNYCKTQLGREAISASSKQLHI 956
KN SS NEE K+R ETV+VSKSPSELEVILGVIK+YCK QL EA+SA+S Q+HI
Sbjct: 1175 KNLLPSSDFNEESKKRKTGETVMVSKSPSELEVILGVIKSYCKAQLENEAVSAASLQIHI 1234
Query: 957 LEAMRKEYANARSLATAQAQFLRAHDEIRMATTRLHLKEDDNDTSVDALSPDELASASVT 1016
LE MRKEY +ARSLA AQAQ LRAHDE++MAT RLHL+E++NDTS+DAL DEL SASV
Sbjct: 1235 LEGMRKEYGHARSLAVAQAQLLRAHDELKMATARLHLRENENDTSMDALGEDELESASVL 1294
Query: 1017 NSSEKFISMTLLSQVKGKLRYLKV 1040
+S+EKF+S+ LLS KGKLRYLKV
Sbjct: 1295 HSNEKFMSLNLLSHTKGKLRYLKV 1318
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486454|ref|XP_003633446.1| PREDICTED: E3 ubiquitin-protein ligase SHPRH-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297736470|emb|CBI25341.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449499151|ref|XP_004160739.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase SHPRH-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449441236|ref|XP_004138388.1| PREDICTED: E3 ubiquitin-protein ligase SHPRH-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|240254615|ref|NP_181609.4| RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein [Arabidopsis thaliana] gi|330254782|gb|AEC09876.1| RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|255559737|ref|XP_002520888.1| snf2 histone linker phd ring helicase, putative [Ricinus communis] gi|223540019|gb|EEF41597.1| snf2 histone linker phd ring helicase, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|297827713|ref|XP_002881739.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297327578|gb|EFH57998.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|357490295|ref|XP_003615435.1| ATP-dependent helicase, putative [Medicago truncatula] gi|355516770|gb|AES98393.1| ATP-dependent helicase, putative [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|356500801|ref|XP_003519219.1| PREDICTED: E3 ubiquitin-protein ligase SHPRH-like [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1045 | ||||||
| TAIR|locus:2064786 | 1664 | AT2G40770 [Arabidopsis thalian | 0.621 | 0.390 | 0.667 | 1.8e-238 | |
| UNIPROTKB|E1C5L6 | 1682 | SHPRH "Uncharacterized protein | 0.399 | 0.247 | 0.398 | 5.8e-117 | |
| UNIPROTKB|E1C615 | 1682 | SHPRH "Uncharacterized protein | 0.399 | 0.247 | 0.398 | 5.8e-117 | |
| MGI|MGI:1917581 | 1674 | Shprh "SNF2 histone linker PHD | 0.359 | 0.224 | 0.417 | 2.6e-115 | |
| UNIPROTKB|E2R8G0 | 1685 | SHPRH "Uncharacterized protein | 0.359 | 0.223 | 0.415 | 4e-114 | |
| UNIPROTKB|Q149N8 | 1683 | SHPRH "E3 ubiquitin-protein li | 0.359 | 0.223 | 0.412 | 8.5e-114 | |
| UNIPROTKB|E1BLB1 | 1688 | SHPRH "Uncharacterized protein | 0.359 | 0.222 | 0.422 | 5.7e-112 | |
| UNIPROTKB|F1S736 | 1688 | SHPRH "Uncharacterized protein | 0.446 | 0.276 | 0.375 | 1.7e-106 | |
| UNIPROTKB|K4DI94 | 1687 | SHPRH "SNF2 histone linker PHD | 0.359 | 0.222 | 0.410 | 2e-103 | |
| RGD|1310342 | 1701 | Shprh "SNF2 histone linker PHD | 0.359 | 0.221 | 0.397 | 1e-102 |
| TAIR|locus:2064786 AT2G40770 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2299 (814.3 bits), Expect = 1.8e-238, P = 1.8e-238
Identities = 445/667 (66%), Positives = 527/667 (79%)
Query: 14 RPYQRRAAYWMVQREKGDXXXXXXXXXXXXXXPLCMPMDFLDTYSTLFYNPFSGSLSLSP 73
RPYQRRAAYWMVQRE+GD PL + + FLD+ + +F NPFSG++SL+P
Sbjct: 289 RPYQRRAAYWMVQRERGDPITLGDKEDNQFISPLSISVGFLDSATKMFLNPFSGNISLTP 348
Query: 74 DYTSSYVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLK 133
+Y S + GGILADEMGLGKTVELLACIF+HRKPA D+ I + VTD LRRLK
Sbjct: 349 EYFSPRIQGGILADEMGLGKTVELLACIFSHRKPAEDE-ISVSNGSSVTDVLNAGLRRLK 407
Query: 134 RERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFEL-KKHTRKK- 191
RERVECICGAVSES KYKG+WVQCD+CDAWQHADCVGYSP+GK ++ + + +K ++KK
Sbjct: 408 RERVECICGAVSESHKYKGVWVQCDLCDAWQHADCVGYSPKGKGKKDSQHIDEKASQKKS 467
Query: 192 --DMTNIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSL 249
D T I+VR+GE+ICQ C EL++ T SP++TGATLIVCPAPIL QW +EITRHTR GSL
Sbjct: 468 KKDATEIIVREGEYICQMCSELLQVTASPISTGATLIVCPAPILPQWHSEITRHTRLGSL 527
Query: 250 KTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKR 309
TCIYEG RN+SLS+ ++DI+EL+ ADIVLTTYDVLKEDL+HD DRH+GDR +RFQKR
Sbjct: 528 ITCIYEGVRNASLSEEPMIDITELLNADIVLTTYDVLKEDLTHDFDRHDGDRHCLRFQKR 587
Query: 310 YPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYG 369
YPVIPT LTRIFWWRICLDEAQMVESNAAAATEMALRLY KHRWCITGTPIQRKLDDL+G
Sbjct: 588 YPVIPTPLTRIFWWRICLDEAQMVESNAAAATEMALRLYTKHRWCITGTPIQRKLDDLFG 647
Query: 370 LLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQ 429
LL+FLK++PF +SRWWIEVIRDPYE D AMEFTHKFFK++M RSSKVHV+DELQLPPQ
Sbjct: 648 LLKFLKANPFDVSRWWIEVIRDPYERRDTKAMEFTHKFFKQVMWRSSKVHVADELQLPPQ 707
Query: 430 EECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITH 489
EECVSWL FS IEEHFY QH+TCV YAREVI+ LK +ILKR GH SSD NP++TH
Sbjct: 708 EECVSWLKFSAIEEHFYSRQHDTCVSYAREVIETLKRDILKR---GHTSSD---NPLVTH 761
Query: 490 AEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLV 549
AEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSP++M+EILMVL+ KT+ EGEEALR L+
Sbjct: 762 AEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVLVKKTQSEGEEALRVLI 821
Query: 550 MALNGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNLTEILPMVAN 609
+ALNG+A IA++++ S+AVSLYKEA+++ EEH+EDFRLDPLLNIH+ HNL EILPM +
Sbjct: 822 VALNGIAAIAMLKQEFSEAVSLYKEALSITEEHAEDFRLDPLLNIHILHNLAEILPMAKS 881
Query: 610 CATELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSREENSDFTDAEDPSGHLSDLS 669
+LS + G E KI + A K QR++ E+ +E +
Sbjct: 882 YGGKLSAS-----GRPET--KIDVKDDDHHRASKRQRINELESLTHDSSETVHQREAIAP 934
Query: 670 ENGFNGD 676
+NG D
Sbjct: 935 DNGLKKD 941
|
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| UNIPROTKB|E1C5L6 SHPRH "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1C615 SHPRH "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| MGI|MGI:1917581 Shprh "SNF2 histone linker PHD RING helicase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2R8G0 SHPRH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q149N8 SHPRH "E3 ubiquitin-protein ligase SHPRH" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1BLB1 SHPRH "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1S736 SHPRH "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|K4DI94 SHPRH "SNF2 histone linker PHD RING helicase, isoform CRA_a" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| RGD|1310342 Shprh "SNF2 histone linker PHD RING helicase, E3 ubiquitin protein ligase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1045 | |||
| pfam00176 | 301 | pfam00176, SNF2_N, SNF2 family N-terminal domain | 7e-39 | |
| COG0553 | 866 | COG0553, HepA, Superfamily II DNA/RNA helicases, S | 2e-14 | |
| PLN03142 | 1033 | PLN03142, PLN03142, Probable chromatin-remodeling | 5e-09 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 3e-05 | |
| smart00249 | 47 | smart00249, PHD, PHD zinc finger | 3e-04 | |
| pfam00628 | 51 | pfam00628, PHD, PHD-finger | 6e-04 | |
| pfam00176 | 301 | pfam00176, SNF2_N, SNF2 family N-terminal domain | 0.001 |
| >gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 7e-39
Identities = 77/300 (25%), Positives = 118/300 (39%), Gaps = 60/300 (20%)
Query: 221 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVL 280
G TL+VCP L W E + +L+ +Y G M L D+V+
Sbjct: 48 RGPTLVVCPLSTLHNWLNEFEKW--APALRVVVYHGDGRERSKLRQSM-AKRLDTYDVVI 104
Query: 281 TTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAA 340
TTY+VL++D S ++ + W R+ LDEA ++++ +
Sbjct: 105 TTYEVLRKDKKLLSLLNKVE---------------------WDRVVLDEAHRLKNSKSKL 143
Query: 341 TEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPY------- 393
+ +L ++R +TGTPIQ L++L+ LL FL+ PF + + E P
Sbjct: 144 YKALKKLKTRNRLLLTGTPIQNNLEELWALLNFLRPGPFGSFKVFEEWFNIPIANTADNK 203
Query: 394 ----ENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQ 449
E G G HK K + R +K V E LPP+ E V + S + Y+
Sbjct: 204 NKNLEKGKEGINRL-HKLLKPFLLRRTKDDV--EKSLPPKTEHVLYCNLSDEQRKLYK-- 258
Query: 450 HETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHP 509
+ L R A N I LLN +++LR+ C HP
Sbjct: 259 ------------KLLTKR---RLALSFAVEGGEKNVGIAS-----LLNLIMQLRKICNHP 298
|
This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g. ERCC6, RAD16, RAD5), DNA recombination (e.g. RAD54), and chromatin unwinding (e.g. ISWI) as well as a variety of other proteins with little functional information (e.g. lodestar, ETL1). Length = 301 |
| >gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >gnl|CDD|214584 smart00249, PHD, PHD zinc finger | Back alignment and domain information |
|---|
| >gnl|CDD|201356 pfam00628, PHD, PHD-finger | Back alignment and domain information |
|---|
| >gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1045 | |||
| KOG0298 | 1394 | consensus DEAD box-containing helicase-like transc | 100.0 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 100.0 | |
| KOG0384 | 1373 | consensus Chromodomain-helicase DNA-binding protei | 100.0 | |
| KOG0387 | 923 | consensus Transcription-coupled repair protein CSB | 100.0 | |
| KOG0389 | 941 | consensus SNF2 family DNA-dependent ATPase [Chroma | 100.0 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 100.0 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 100.0 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 100.0 | |
| KOG4439 | 901 | consensus RNA polymerase II transcription terminat | 100.0 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 100.0 | |
| KOG0388 | 1185 | consensus SNF2 family DNA-dependent ATPase [Replic | 100.0 | |
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 100.0 | |
| KOG0390 | 776 | consensus DNA repair protein, SNF2 family [Replica | 100.0 | |
| KOG1001 | 674 | consensus Helicase-like transcription factor HLTF/ | 100.0 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 100.0 | |
| KOG1015 | 1567 | consensus Transcription regulator XNP/ATRX, DEAD-b | 100.0 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 100.0 | |
| KOG1000 | 689 | consensus Chromatin remodeling protein HARP/SMARCA | 100.0 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 100.0 | |
| KOG1016 | 1387 | consensus Predicted DNA helicase, DEAD-box superfa | 100.0 | |
| KOG0383 | 696 | consensus Predicted helicase [General function pre | 100.0 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.92 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 99.77 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.46 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 99.36 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.3 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.3 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 99.17 | |
| KOG1123 | 776 | consensus RNA polymerase II transcription initiati | 99.17 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 98.95 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 98.94 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 98.75 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 98.7 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 98.65 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 98.56 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 98.5 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 98.43 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 98.42 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 98.3 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 98.28 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 98.27 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 98.25 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 98.24 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 98.23 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 98.21 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 98.17 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 98.15 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 98.12 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 98.11 | |
| PTZ00424 | 401 | helicase 45; Provisional | 98.09 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 98.08 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 98.07 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 98.06 | |
| PTZ00110 | 545 | helicase; Provisional | 98.0 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 97.99 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 97.98 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 97.96 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 97.96 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 97.91 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 97.83 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 97.82 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 97.82 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 97.75 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 97.72 | |
| KOG0298 | 1394 | consensus DEAD box-containing helicase-like transc | 97.71 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 97.69 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 97.63 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 97.58 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 97.55 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 97.54 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 97.39 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 97.35 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 97.34 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 97.24 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 97.18 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 97.08 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 97.05 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 97.01 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 96.96 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 96.68 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 96.25 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 96.09 | |
| COG0610 | 962 | Type I site-specific restriction-modification syst | 95.54 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 95.46 | |
| PF11496 | 297 | HDA2-3: Class II histone deacetylase complex subun | 95.33 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 95.19 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 95.1 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 95.03 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 95.01 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 94.92 | |
| KOG1513 | 1300 | consensus Nuclear helicase MOP-3/SNO (DEAD-box sup | 94.73 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 93.96 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 93.82 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 93.55 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 93.5 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 93.46 | |
| KOG0947 | 1248 | consensus Cytoplasmic exosomal RNA helicase SKI2, | 93.25 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 92.97 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 92.79 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 92.58 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 92.45 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 92.44 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 92.43 | |
| KOG1802 | 935 | consensus RNA helicase nonsense mRNA reducing fact | 92.34 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 92.12 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 91.73 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 91.58 | |
| PF00628 | 51 | PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( | 91.52 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 91.33 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 90.6 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 89.99 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 89.4 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 88.66 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 88.64 | |
| KOG1132 | 945 | consensus Helicase of the DEAD superfamily [Replic | 88.08 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 87.46 | |
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 87.28 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 86.56 | |
| KOG1131 | 755 | consensus RNA polymerase II transcription initiati | 86.01 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 85.5 | |
| smart00249 | 47 | PHD PHD zinc finger. The plant homeodomain (PHD) f | 85.08 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 84.83 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 84.4 | |
| PF06733 | 174 | DEAD_2: DEAD_2; InterPro: IPR010614 This represent | 84.3 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 83.97 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 83.79 | |
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 83.62 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 81.09 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 81.05 | |
| KOG1803 | 649 | consensus DNA helicase [Replication, recombination | 80.22 |
| >KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-84 Score=778.90 Aligned_cols=876 Identities=29% Similarity=0.342 Sum_probs=682.9
Q ss_pred CCCCCCccCCChHHHHHHHHHHHHhhhCCCCCC------chhhhccccCCCcccccccCCCcceeeeccCCcccCCCCCC
Q 001607 3 EEDLPDLLPLLRPYQRRAAYWMVQREKGDSASS------SERERSQFFSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYT 76 (1045)
Q Consensus 3 ~~~~p~L~~~LrpyQ~~av~WMl~rE~~~~~~~------~~~~~~~~~~plw~~~~~~d~~~~~y~n~~tG~~~~~~~~~ 76 (1045)
.+.+..+.+++|+||.+++.||.+|+..-...+ ......+...++-.++.+.+-+. .-+.
T Consensus 236 ~D~~~~~~~~~r~~~~r~~~~~~~~~~e~~~~s~~~It~~~~~di~~~~~~~l~~~~~~~~~--------------~l~~ 301 (1394)
T KOG0298|consen 236 LDLIKRFQSQLRKYQQRTVSWMPSREQEYTQVSANFITLHLIDDITRVFKLKLCFQFYSFEE--------------ELPK 301 (1394)
T ss_pred chHHHHhhhhccHHHHHHHHhccccchhhhhccccccccccccchHHHhhhccceecccccc--------------cchh
Confidence 345667789999999999999999998543211 01111111111111111111110 1122
Q ss_pred CCCccCceeecCCCCcHHHHHHHHHHhccCCCCCCccccccccccchhhhhHHHHhhhhhhhhhcccccccccccccccc
Q 001607 77 SSYVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQ 156 (1045)
Q Consensus 77 ~~~~rGGILADEMGLGKTvq~LalI~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~c~c~~~~~~~~~~~~~v~ 156 (1045)
.+.+.||.+|||||||||++-+|++..++.|... ..........|.|+...+...+.+.|++
T Consensus 302 e~l~~~~t~~de~gl~k~~E~~a~~~~n~~p~~~------------------~~~s~~~~~~~~~~~~~e~~~~r~nq~~ 363 (1394)
T KOG0298|consen 302 ESLSPGGTLADEMGLGKTVEFLAMLTSNRRPPDS------------------YRNSYLHQRLEEYSDEVELKRSRINQKD 363 (1394)
T ss_pred ccCCCcchHHHHhhhHHHHHHHHHHhccCCCccc------------------ccchHHHHHHHHHhhhhHhHHhHhhhhh
Confidence 3345699999999999999999999999877422 2233445677889999998889999999
Q ss_pred cccccccccccccccCCCCCCccchhhhhhhcccccc--ccccccCCcccccchhhhhhccCCCCCCCcEEEEeCchhHH
Q 001607 157 CDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDM--TNIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILA 234 (1045)
Q Consensus 157 c~~c~~w~h~~cv~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~tLIV~P~SLl~ 234 (1045)
|..|..|.++.-.+.-.+.. ..+|... .........+.|..|.........+..+|+||||||.+++.
T Consensus 364 ~~~~~~~~~~g~~~~~ade~----------~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~ 433 (1394)
T KOG0298|consen 364 EVLCSGDKKHGKRVQCADEM----------GWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILM 433 (1394)
T ss_pred HHhhcCCccCCcceeehhhh----------hccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHH
Confidence 99998888764111000000 0011111 12233355566667777777778889999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccchhhhhhcccCCCcc
Q 001607 235 QWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIP 314 (1045)
Q Consensus 235 qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~~~~~r~~k~~~~~~ 314 (1045)
||-.||.+|++ +.++|+.|.|.++.. ...+..+.+||||+|||++|+.++.+. ...++.|.+|++++|+.++
T Consensus 434 QW~~EI~kH~~-~~lKv~~Y~Girk~~-----~~~~~el~~yDIVlTtYdiLr~El~ht--e~~~~~R~lR~qsr~~~~~ 505 (1394)
T KOG0298|consen 434 QWFEEIHKHIS-SLLKVLLYFGIRKTF-----WLSPFELLQYDIVLTTYDILRNELYHT--EDFGSDRQLRHQSRYMRPN 505 (1394)
T ss_pred HHHHHHHHhcc-ccceEEEEechhhhc-----ccCchhhhccCEEEeehHHHHhHhhcc--cccCChhhhhcccCCCCCC
Confidence 99999999995 347999999997654 235588899999999999999999885 4568889999999999999
Q ss_pred ccccccccceEEeccccccCChHHHHHHHHHHhccCcEEEEeccCCCCChhhhhhcccccCCCCCCChHHHHHHHcCCCc
Q 001607 315 TLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYE 394 (1045)
Q Consensus 315 s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LTGTPiqN~l~DL~~LL~FL~p~~~~~~~~f~~~~~~p~~ 394 (1045)
+||..+.||||||||||++.+.+|.+++|+..|++.+||++||||||+ ++||++||.||+..||+...+|.+.+..++.
T Consensus 506 SPL~~v~wWRIclDEaQMvesssS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~ 584 (1394)
T KOG0298|consen 506 SPLLMVNWWRICLDEAQMVESSSSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQ 584 (1394)
T ss_pred CchHHHHHHHHhhhHHHhhcchHHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 9999999999999999999999999988876
Q ss_pred CCchhhHHHHHHHHHHhhhhcccccccccCCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 001607 395 NGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVP 474 (1045)
Q Consensus 395 ~~~~~~~~~L~~~l~~~mlRRtK~dV~~el~LPpk~e~vv~v~lS~~Q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (1045)
.. .....+..++...++|+.|.+|..++.+||+.+.++++.+++.|-++|+..+..|.++++..+..++.+.+..
T Consensus 585 ~r--a~~~~~~dl~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~--- 659 (1394)
T KOG0298|consen 585 LR--AKCEPLLDLFKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDN--- 659 (1394)
T ss_pred HH--hhhhhHHHHHHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhcccc---
Confidence 54 4566788999999999999999999999999999999999999999999999999999999888887665411
Q ss_pred CCCCCCCCcCcccchhhHHHHHHHHHHHHHHccCCCCCCCCcccccCCCCCHHHHHHHHHHHHHHhhhhhcchHHHhhhh
Q 001607 475 GHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNG 554 (1045)
Q Consensus 475 g~~~~~~~~~~~~~~~~~~~il~~L~rLRqiC~HP~L~~~~~~~~~~~~~t~~elL~~Ll~~~~~e~~~~~rkvlifsq~ 554 (1045)
+.+.+.+++...+.++.+|++|||+||||+++.++..+.... +++|+|..|+++...++....|.....+++
T Consensus 660 ------~sd~~~l~~~~~a~i~~~l~rLRq~Cchplv~~~~ls~~k~~--s~~DiL~~lle~~ed~~~~~~R~~~~~~~~ 731 (1394)
T KOG0298|consen 660 ------SSDLASLSPQLLAIILKWLLRLRQACCHPLVGNSNLSSTKYL--SIQDILARLLENTEDECKTELRTLASSKNG 731 (1394)
T ss_pred ------ccccccCChhhHHHHHHHHHHHHHhhcccccccCCcchhcCC--CHHHHHHHHHHhcchhhhHHHHHHHHHhhh
Confidence 122234556678899999999999999999999988776555 999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHH----HHHHHHHHHHHHHHHhhcc-CCCCCcCceeEeeCCcCCcchhhhhhhhhhcCCCCceEEEecc
Q 001607 555 LAGIALIEKNLSQ----AVSLYKEAMAVVEEHSEDF-RLDPLLNIHLHHNLTEILPMVANCATELSQNEQHFPGCSEKAF 629 (1045)
Q Consensus 555 ~a~L~ii~~~~~~----a~~~y~~~l~~~~~~~~~f-~~d~~~~~~~~~nl~~~np~~~~QA~R~hriGq~~~v~~~r~~ 629 (1045)
.|.+..+.++|.. ....|+..+....+..++. -.|.....|-.+++. +|.
T Consensus 732 ~a~i~~~~n~f~~~~l~i~k~y~~~~nl~~~~~~~~~~~d~d~h~~ei~~~~--~~~----------------------- 786 (1394)
T KOG0298|consen 732 LAAIYFEKNDFPGGILQIIKYYRLKLNLANEPNEQNISVDSDLHIHEIYNLL--QAS----------------------- 786 (1394)
T ss_pred hHHHHHHHhcCchhHHHHHHHhccccccCCCchhcccccchhhHHHHHhhhh--ccc-----------------------
Confidence 9999999998884 4455666555443332221 123333333333333 110
Q ss_pred ccCCccccchhHhhhhccccccCCCCCCCCCCCCCCCccccCCCCCCCCCCcCCCCCCCChhhHHHHHHHHHHHhhhhhh
Q 001607 630 KIHSIETCDENARKCQRVSREENSDFTDAEDPSGHLSDLSENGFNGDRKSDCCVSSSSFDDASLITVCENLKQKYLSGFS 709 (1045)
Q Consensus 630 ~~~t~ee~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~ 709 (1045)
.+-+-+...+..++|+.-.+. +...+.. |....++ +.--|..++++|++.+.
T Consensus 787 -~~~~sd~~~~~~~~~~~~~~~--------------------s~~~~~~--~~d~~~~-----~~~~~q~~~~kl~s~~~ 838 (1394)
T KOG0298|consen 787 -SLAPSDRKLTELEHKKYQAQM--------------------SRLEWKY--LEDETRV-----LYSLLQDLNEKLESVSI 838 (1394)
T ss_pred -cccchhhhHHHHHHHhhhhhh--------------------ccccchh--hchhhHH-----HHHHHHHHHHHHHHHHh
Confidence 000011112222222222211 1111111 1111222 66778899999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhcccCChhHHHHHHHhhcCCCchHHHHHHHHHHhhccccccccccccccccCcchhH
Q 001607 710 VKLSVAQQEFRKSYMQVCNALDDREKQYSAWWLEALHHAEGNKDFSAELIRKIEEAISGSLNKSRALRTASRYRSISGLT 789 (1045)
Q Consensus 710 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ww~~~l~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~gL~ 789 (1045)
.+...++.+|...+.++.+..+..+.....||++.....+.+.++..+|- .|+.+++.+.+++
T Consensus 839 ~~~t~~~~e~~~~~~~~~~v~s~m~~k~~~~v~~~~~lqe~~~~~~~eLr-----------------ai~~~~~~i~i~~ 901 (1394)
T KOG0298|consen 839 LKKTFELEEFDLLATNMVNVKSSMGDKIWNKVRDDRLLQEINVEFLEELR-----------------AIAFRARFIHIMK 901 (1394)
T ss_pred hhhhhhHHHHHHHhhhhhhhhccccchhHHHHHhhhHHHHHHHHHHHHHH-----------------HHHhhhhccccch
Confidence 99999999999999999999999999999999999999999888877776 2666899999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhhcCCChHhhhhccccccccCCCCCCcccccccchhHHHHHHhhccccccCCCc
Q 001607 790 YHIQSSLDQLEASRKTLLDRLLEIDQTMEKPKEEDMDRMRHCRICYGVGDGPICVHCELDESFQDYEARLFRLKKSQGDI 869 (1045)
Q Consensus 790 ~~l~~~l~~L~~~R~~~~~~l~~l~~~~~~p~~~~ve~~~~C~~c~~~~~~~~C~~C~~~~~~~~ye~~LF~~~~~~~~~ 869 (1045)
..|++...+|..+++.+..++.++++.++.+...+..+...|-.|-...-++.|.+|.+|..+..|+++.|+.+...++-
T Consensus 902 l~L~~~~~~l~~s~~e~~~~~~~i~~~Ie~~~~~~~n~~~i~d~~~k~~~~h~~~~~~~d~~~~i~~~r~~~~~~~~~~~ 981 (1394)
T KOG0298|consen 902 LKLQNLKSDLIASFEEVKGVMQEICEAIETGGALVLNRMEIIDFIEKVTVCHLTDIEDYDKDKPIKPKRHRRCRLCLRRK 981 (1394)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHhccCCCcchHhhcccccccccchhhhhhhhhhhh
Confidence 99999999999999999999999999999999888888888888887777888999999999999999998866543332
Q ss_pred ---cchHHHHHHHhhhccccccccccCCCCCCCCCCCCchhhhhccccccceeeccCCchHHHHHHHHHHH-HHhhhchh
Q 001607 870 ---ASAEEAVDLQKKNSSLNRFYWYLSQPNKNSTSSSVGNEEIKRRDVRETVVVSKSPSELEVILGVIKNY-CKTQLGRE 945 (1045)
Q Consensus 870 ---~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Se~E~~Lk~i~~~-~k~~~~~~ 945 (1045)
+-++|-+.+|.+..+++-+.-++++ -.-..-|.|..+ .+.++.++
T Consensus 982 ~~i~~~ce~~~~q~k~~~~~s~~~~l~~-------------------------------~~~~~ekSi~~~~~~~~l~~e 1030 (1394)
T KOG0298|consen 982 SLILFECELFALQPKEDATVSESLELSS-------------------------------MEKSFEKSIIAFLRKKQLFSE 1030 (1394)
T ss_pred HHHHHHHHHHhcCccccchhhhhhccch-------------------------------hhhcchhhHHHHHHHHHHHHH
Confidence 5566777777665544443322221 111112334444 45589999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhhhccccCCCCCcccccCccccchhhhhchhhHHHhH
Q 001607 946 AISASSKQLHILEAMRKEYANARSLATAQAQFLRAHDEIRMATTRLHLKEDDNDTSVDALSPDELASASVTNSSEKFISM 1025 (1045)
Q Consensus 946 ~~~~~~~~l~~le~~rkE~~~~r~l~~a~~~~l~A~DEL~ma~~Rlrlr~~~e~~~~~~i~~~ev~~~~~~~~~~k~~a~ 1025 (1045)
+..+|+.|+++|+.|+.++...++||..+.|.+.|+||++|+++|+.|++..|..++|.|+.++++.+.+-.+++++++.
T Consensus 1031 ~~~~~t~~~~~l~~lqnt~~~~~~~~~~~qq~~~~~~~~~~~~m~l~lkd~~~~~~~y~i~~~qld~~~~~nt~s~~~~q 1110 (1394)
T KOG0298|consen 1031 WKEEATPLLELLSCLQNTYKFRIEYWIEVQQMVDALDELEMSKMRLYLKDDEEEQSIYRILACQLDEQSQLNTYSLQTSQ 1110 (1394)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhheeeecCcHHHHHHHHHHHhhHHHHHHHhHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccccccccccc
Q 001607 1026 TLLSQVKGKLRYLKVSTE 1043 (1045)
Q Consensus 1026 ~~l~~~~gql~YL~~~~~ 1043 (1045)
..+..+.|-+|||+||.|
T Consensus 1111 ~~~ls~~G~~r~lk~l~e 1128 (1394)
T KOG0298|consen 1111 LSFLSIPGLLRYLKGLKE 1128 (1394)
T ss_pred hhhhccchHHHHHHHHHH
Confidence 999999999999999975
|
|
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
| >KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] | Back alignment and domain information |
|---|
| >KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] | Back alignment and domain information |
|---|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
| >KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
| >KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0383 consensus Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
| >KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi | Back alignment and domain information |
|---|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
| >KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >COG3587 Restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
| >KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
| >smart00249 PHD PHD zinc finger | Back alignment and domain information |
|---|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin | Back alignment and domain information |
|---|
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1803 consensus DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1045 | ||||
| 1z6a_A | 500 | Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN | 5e-13 | ||
| 1z63_A | 500 | Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM | 1e-12 | ||
| 3mwy_W | 800 | Crystal Structure Of The Chromodomain-atpase Portio | 1e-06 |
| >pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN Length = 500 | Back alignment and structure |
|
| >pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With Dsdna Length = 500 | Back alignment and structure |
| >pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 5e-27
Identities = 64/299 (21%), Positives = 111/299 (37%), Gaps = 81/299 (27%)
Query: 220 ATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIV 279
+L++CP +L W+ E+++ P L+ ++ R+ +L DI+
Sbjct: 85 ELTPSLVICPLSVLKNWEEELSKFA-P-HLRFAVFHEDRSKI----------KLEDYDII 132
Query: 280 LTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAA 339
LTTY VL D L + W I +DEAQ ++ N
Sbjct: 133 LTTYAVLLRDTR-------------------------LKEVEWKYIVIDEAQNIK-NPQT 166
Query: 340 ATEMALR-LYAKHRWCITGTPIQRKLDDLYGLLRFL------KSSPFSISRWWIEVIRDP 392
A++ L +K+R +TGTPI+ K+DDL+ ++ FL S F P
Sbjct: 167 KIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFK------SKFATP 220
Query: 393 YENGDVGAMEFTHKFFKEIMCRSSK--VHVSDELQLPPQEECVSWLTFSPIEEHFYQSQH 450
+ GD A E + R +K + ++ LP + E + +P + Y++
Sbjct: 221 IKKGDNMAKEELKAIISPFILRRTKYDKAIIND--LPDKIETNVYCNLTPEQAAMYKA-- 276
Query: 451 ETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHP 509
+ + + +L++LLKL+Q HP
Sbjct: 277 -----EVENLFNNIDSVTGIKR-------------------KGMILSTLLKLKQIVDHP 311
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 | Back alignment and structure |
|---|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 | Back alignment and structure |
|---|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 | Back alignment and structure |
|---|
| >3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Length = 52 | Back alignment and structure |
|---|
| >1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Length = 76 | Back alignment and structure |
|---|
| >2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Length = 68 | Back alignment and structure |
|---|
| >1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 72 | Back alignment and structure |
|---|
| >3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Length = 528 | Back alignment and structure |
|---|
| >3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Length = 68 | Back alignment and structure |
|---|
| >1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 78 | Back alignment and structure |
|---|
| >1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 64 | Back alignment and structure |
|---|
| >3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} Length = 75 | Back alignment and structure |
|---|
| >1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Length = 79 | Back alignment and structure |
|---|
| >3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Length = 183 | Back alignment and structure |
|---|
| >2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 | Back alignment and structure |
|---|
| >3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Length = 488 | Back alignment and structure |
|---|
| >2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Length = 52 | Back alignment and structure |
|---|
| >3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Length = 447 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1045 | ||||
| d1z63a1 | 230 | c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 h | 9e-12 | |
| d1z63a1 | 230 | c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 h | 2e-04 | |
| d1wema_ | 76 | g.50.1.2 (A:) Death associated transcription facto | 2e-08 | |
| d1z3ix2 | 298 | c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fis | 4e-08 | |
| d1z3ix2 | 298 | c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fis | 8e-05 | |
| d1weea_ | 72 | g.50.1.2 (A:) PHD finger protein At1g33420 {Thale | 3e-07 | |
| d1wepa_ | 79 | g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus | 5e-07 | |
| d1wewa_ | 78 | g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale c | 1e-06 | |
| d1we9a_ | 64 | g.50.1.2 (A:) PHD finger protein At5g26210 {Thale | 3e-05 |
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Score = 63.9 bits (154), Expect = 9e-12
Identities = 30/111 (27%), Positives = 49/111 (44%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 376
L + W I +DEAQ +++ + L +K+R +TGTPI+ K+DDL+ ++ FL
Sbjct: 120 LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNP 179
Query: 377 SPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLP 427
+ P + GD A E + R +K + LP
Sbjct: 180 GLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLP 230
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 230 | Back information, alignment and structure |
|---|
| >d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 | Back information, alignment and structure |
|---|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 298 | Back information, alignment and structure |
|---|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 298 | Back information, alignment and structure |
|---|
| >d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 | Back information, alignment and structure |
|---|
| >d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 | Back information, alignment and structure |
|---|
| >d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 | Back information, alignment and structure |
|---|
| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1045 | |||
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 100.0 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 100.0 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 99.95 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 99.92 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.81 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.79 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.64 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.33 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.13 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.11 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 98.99 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 98.98 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 98.76 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 98.71 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 98.65 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 98.63 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 98.27 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 98.25 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 98.18 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 98.07 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 98.01 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 97.94 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 97.92 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 97.57 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 97.54 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 97.05 | |
| d1weea_ | 72 | PHD finger protein At1g33420 {Thale cress (Arabido | 96.36 | |
| d1wepa_ | 79 | PHD finger protein 8 {Mouse (Mus musculus) [TaxId: | 95.99 | |
| d1wema_ | 76 | Death associated transcription factor 1, Datf1 (DI | 95.62 | |
| d1wewa_ | 78 | Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop | 95.48 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 94.12 | |
| d1we9a_ | 64 | PHD finger protein At5g26210 {Thale cress (Arabido | 93.55 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 87.89 | |
| d1weva_ | 88 | PHD finger protein 22 {Mouse (Mus musculus) [TaxId | 85.83 | |
| d1wesa_ | 71 | PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu | 83.52 | |
| d1mm2a_ | 61 | Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 | 83.3 | |
| d2pnxa1 | 51 | Inhibitor of growth protein 4, Ing4 {Homo sapiens | 82.68 |
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=357.44 Aligned_cols=227 Identities=30% Similarity=0.481 Sum_probs=196.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 88788668882999999999988010999998122101246788666543477762053046896457888888885583
Q 001607 4 EDLPDLLPLLRPYQRRAAYWMVQREKGDSASSSERERSQFFSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTSSYVFGG 83 (1045)
Q Consensus 4 ~~~p~L~~~LrpyQ~~aV~WMl~rE~~~~~~~~~~~~~~~~~p~w~~~~~~d~~~~~y~n~~tG~~~~~~~~~~~~~rGG 83 (1045)
.+|++++.+|+|||++||.||..++..+ .||
T Consensus 4 ~~P~~~~~~L~~yQ~~~v~~~~~~~~~~-------------------------------------------------~g~ 34 (230)
T d1z63a1 4 LEPYNIKANLRPYQIKGFSWMRFMNKLG-------------------------------------------------FGI 34 (230)
T ss_dssp CCCCSCSSCCCHHHHHHHHHHHHHHHTT-------------------------------------------------CCE
T ss_pred CCCHHHHCCHHHHHHHHHHHHHHHHHCC-------------------------------------------------CCE
T ss_conf 6944650450699999999999862169-------------------------------------------------987
Q ss_pred EEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00259887278999999996149999972000111123213466787732222453203555321224652102333534
Q 001607 84 ILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQCDICDAW 163 (1045)
Q Consensus 84 ILADEMGLGKTve~LalIl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c~~~~~~~~~~~~~v~c~~c~~w 163 (1045)
|||||||||||+++|+++......
T Consensus 35 iLaDe~GlGKT~~~i~~~~~~~~~-------------------------------------------------------- 58 (230)
T d1z63a1 35 CLADDMGLGKTLQTIAVFSDAKKE-------------------------------------------------------- 58 (230)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHHT--------------------------------------------------------
T ss_pred EEEECCCCCHHHHHHHHHHHHHHC--------------------------------------------------------
T ss_conf 998589988699998735544212--------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 45654566789877640366632013565442202578544310012320168989999689993811199999999995
Q 001607 164 QHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRH 243 (1045)
Q Consensus 164 ~h~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~tLIV~P~SLl~QW~~Ei~k~ 243 (1045)
...+++|||||++++.||.+|+.+|
T Consensus 59 -------------------------------------------------------~~~~~~LIv~p~~l~~~W~~e~~~~ 83 (230)
T d1z63a1 59 -------------------------------------------------------NELTPSLVICPLSVLKNWEEELSKF 83 (230)
T ss_dssp -------------------------------------------------------TCCSSEEEEECSTTHHHHHHHHHHH
T ss_pred -------------------------------------------------------CCCCCCCEECCHHHHHHHHHHHHHH
T ss_conf -------------------------------------------------------3556441105355426777777764
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCHHHHCCCCEEEEEHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 29999709998087777654421010211027669998068897400467777765023432102478752101122322
Q 001607 244 TRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWW 323 (1045)
Q Consensus 244 ~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dIVITTY~~L~~d~~~~~~~~~~~~~~~r~~k~y~~~~s~L~~i~w~ 323 (1045)
+ +...+..+.+... .....+++|+|++|+.+.... .+....|+
T Consensus 84 ~--~~~~~~~~~~~~~----------~~~~~~~~vvi~~~~~~~~~~-------------------------~l~~~~~~ 126 (230)
T d1z63a1 84 A--PHLRFAVFHEDRS----------KIKLEDYDIILTTYAVLLRDT-------------------------RLKEVEWK 126 (230)
T ss_dssp C--TTSCEEECSSSTT----------SCCGGGSSEEEEEHHHHTTCH-------------------------HHHTCCEE
T ss_pred C--CCCCCEEECCCCC----------HHHCCCCCEEEEEHHHHHHHH-------------------------HHHCCCCE
T ss_conf 0--2544101014210----------000257688985499998688-------------------------87416513
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 07714200137968899999997234828998266888991354101234688899983789999719876884326999
Q 001607 324 RICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEF 403 (1045)
Q Consensus 324 rVIlDEAH~iKN~~S~~~~al~~L~a~~Rw~LTGTPiqN~l~DL~~Ll~fL~p~~~~~~~~f~~~~~~p~~~~~~~~~~~ 403 (1045)
+||+||||++||+.++.++++..+++.+||+|||||++|++.|||+++.||+|++|++...|.+.|..++..++....+.
T Consensus 127 ~vI~DEah~~k~~~s~~~~~~~~l~a~~r~~LTgTPi~n~~~dl~~ll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~ 206 (230)
T d1z63a1 127 YIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEE 206 (230)
T ss_dssp EEEEETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHH
T ss_pred EEEEEHHHCCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 99997100344322055666544046557997252677678889988876289867899999999844553267789999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 999987765320233333557999
Q 001607 404 THKFFKEIMCRSSKVHVSDELQLP 427 (1045)
Q Consensus 404 L~~~L~~~mlRRtK~dV~~el~LP 427 (1045)
|+.++++||+||+|.|+....+||
T Consensus 207 L~~~l~~~~lRr~K~d~~v~~dLP 230 (230)
T d1z63a1 207 LKAIISPFILRRTKYDKAIINDLP 230 (230)
T ss_dssp HHHHHTTTEECCCTTCHHHHTTSC
T ss_pred HHHHHHCCEEEEECCCCCHHHCCC
T ss_conf 999842337997168861755679
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} | Back information, alignment and structure |
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