Citrus Sinensis ID: 001612

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040----
Protein Sequence
MSVLQLSWLFLLTMLTNFGGINMVLVSGQCQSDQQSLLLQMKSSLVFNSSLSFRMVQWSQSNDCCTWSGVDCDEAGRVIGLDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLVGKIPISTQLQSFLATSFEGNKGLCGPPLNVCRTNSSKALPSSPASTDEIDWFFIAMAIEFVVGFGSVVAPLMFSRKVNKWYNNLINRIINCRFCV
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccccccccccccccccccccccccEEEcccccEEEEEcccccccccccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccHHHHccccccccEEEccccccccccccHHHHHHcccccccEEEcccccccccccccccccccccEEEcccccccccccHHccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEEEcHHHHcccccccEEEccccEEEEEccccccccccccEEEcccccccccccccccccccEEEcccccccccccHHHHHHccccccEEEccccccccccccccccccccccEEEccccccEEccccccccccEEEcccccccccccccccccccccEEEEEEccccEEcccccccccccccEEEcccccccccccHHHHHccccccEEEccccccEEEccccccccccccEEEcccccccccccHHHHHcccccEEEcccccccccccHHHHccccccEEEccccccEEEccccccccccccccEEEcccccccccccHHHHHcHHHHcccccccccccccccccccccccEEEEEEEEEEEcccHHHHHHHccccEEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccEEEEc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEccccEEEEEEcccccccccccccHHHHcHHHHcEEEccccccccccccHHHcccccccEEEcccccccccccHHHHcccccEEEEccccccccccccccccccHHHHHHcccccEEEcccccccccccHHHHHHHccccccEEEEcccccccccccHHHHccccccEEEcccccccccccHHHHcccccEEEEEccccccccccHHHccccccEEEEEcccccccccccHHccccccEEEEEccccccccccHHHHccccccEEEcccccccccccHHHcccccccEEEcccccccccccccccccccEEEEcccccccccccHHHHccccccEEEEcccccccccccHHHHcccccEEEEEcccccccccccccccccccccEEEcccccccccccHHHHccccccEEEEccccccccccHHHHHccccccEEEEccccccccccccccccccccEEEcccccccccccHccccccEEEEcccccccccccHHHHcccccEEEEEEcccccccccccccHcccccccEEEEEccccccccccccccccEEEEcccccccccccHHHccccccEEEEEcccccccccccHHHccccccEEEEcccccccccccHHHHHHHHHcEEEEcccccccccccHHHccccccEEEEcccccccccccHHHHcccccEEEEcccccccccccHHHccccccEEEEEEccccccccccHHccccccccEEEEEccccccccccHHHHHHHHHHHHHcccccccccccccHcccccccEEEHHEEEEcccccHHHHHHccEEEEEEcccccEEccccHHHHHcccccEEEEEEccEEccccHHccccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHcccccEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcEEEc
Coil and Loop (DISEMBL)
MSVLQLSWLFLLTMLTNFGGINMVLVSGQCQSDQQSLLLQMKSSLVFNSSLSFRMVQwsqsndcctwsgvdcdeagrvigldlseesisagidnssplfSLKYLQSLNLAFNMFnateipsglgsltnltnlnlsnagfagqipiqvsGMTRLVTLDLsslnrfgaplklenpnlSGLLQNLAELRELYLdganisapgIEWCQALSSLVPKLQVLSLsscylsgpihpslaklqslsvirldqndllspvpEFLADFFNLTSLRLshsrlngtfpekILQVHTLETldlsgnsllqgslpdfpknsslrTLMLSntnfsgvlpdsignlknlsrlDLALcyfdgsiptsLANLTQLVYLDlsfnkfvgpipslhmsknlthldlsynalpgaisstdwehlSNLVYVDLRynslngsipgslfslpmLQQLQLAENKfgglipefsnasssaldtidlsgnrlegpipmsifdlRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYnnltvnagsdssfpsqVRTLRLAScklrvipnlknqsklfnldlsdnqisgeipnwVWEIGNVSLQYLNLSHNLLsslqrpfsisdlspitvldlhsnqlqgnipypppkavlvdysnnsftssipddignfVSFTLFFSlsnnsitgvipETLCRAKYLLVLDLsknklsgkmptcLIKMSEILGVLNlrgnslsgtlsvtfpgncglhtldlngnqlggtvpkslanCRNLVVldlgnnkirdtfPWWLENISSLRVLVLRSnsfygniscrengdswpklqIVDLasnnfggrvpqkCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSidfsrnnfdgpipeEIGRLKslhglnlsqnaltgpipsaignLQQLESLDlsmnhlsgqipiqlANLTFLSFLNLSHNnlvgkipistQLQSFLATsfegnkglcgpplnvcrtnsskalpsspastdeIDWFFIAMAIEFVVGFGSVVAPLMFSRKVNKWYNNLINRIINCRFCV
Flexible Loop (DISEMBL)
MSVLQLSWLFLLTMLTNFGGINMVLVSGQCQSDQQSLLLQMKSSLVFNSSLSFRMVQWSQSNDCCTWSGVDCDEAGRVIGLDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVnagsdssfpsQVRTLRLASCKLrvipnlknqsklfnLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLasnnfggrvPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLVGKIPISTQLQSFLATSFEGNKGLCGPPLNVCRTNSSKALPSSPASTDEIDWFFIAMAIEFVVGFGSVVAPLMFSRKVNKWYNNLINRIINCRFCV
Low Complexity Region (SEG)
MSVLQLSWLFLLTMLTNFGGINMVLVsgqcqsdqqslllqmksslVFNSSLSFRMVQWSQSNDCCTWSGVDCDEAGRVIGLDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPsglgsltnltnlnlsnAGFAGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVslqylnlshnllsslqRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGnfvsftlffslsnnsITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENIsslrvlvlrsNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQlanltflsflnlshnnlVGKIPISTQLQSFLATSFEGNKGLCGPPLNVCRTNSSKALPSSPASTDEIDWFFIAMAIEFVVGFGSVVAPLMFSRKVNKWYNNLINRIINCRFCV
Disordered region (IsUnstruct)
**VLQLSWLFLLTMLTNFGGINMVLVSGQCQSDQQSLLLQMKSSLVFNSSLSFRMVQWSQSNDCCTWSGVDCDEAGRVIGLDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLL************LRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFS*****ALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGS***FPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMM********NFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLVGKIPISTQLQSFLATSFEGNKGLCGPPLNVCR***************EIDWFFIAMAIEFVVGFGSVVAPLMFSRKVNKWYNNLINRIINCRFC*
Disordered Region (DISOPRED)
*SVLQLSWLFLLTMLTNFGGINMVLVSGQCQSDQQSLLLQMKSSLVFNSSLSFRMVQWSQSNDCCTWSGVDCDEAGRVIGLDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMS**********DVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLVGKIPISTQLQSFLATSFEGNKGLCG**************************FFIAMAIEFVVGFGSVVAPLMFSRKVNKWYNNLINRIINCRFCV
Disordered Region (DISEMBL)
MSVLQLSWLFLLTMLTNFGGINMVLVSGQCQSDQQSLLLQMKSSLVFNSSLSFRMVQWSQSNDCCTWSGVDCDEAGRVIGLDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLVGKIPISTQLQSFLATSFEGNKGLCGPPLNVCRTN**********STDEIDWFFIAMAIEFVVGFGSVVAPLMFSRKVNKWYNNLINRIINCRFCV
Disordered Region (DISPRO)
*SVLQLSWLFLLTMLTNFGGINMVLVSGQCQSDQQSLLLQMKSSLVFNSSLSFRMVQWSQSNDCCTWSGVDCDEAGRVIGLDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLVGKIPISTQLQSFLATSFEGNKGLCGPPLNVCR**************DEIDWFFIAMAIEFVVGFGSVVAPLMFSRKVNKWYNNLINRIINCRFCV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVLQLSWLFLLTMLTNFGGINMVLVSGQCQSDQQSLLLQMKSSLVFNSSLSFRMVQWSQSNDCCTWSGVDCDEAGRVIGLDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLVGKIPISTQLQSFLATSFEGNKGLCGPPLNVCRTNSSKALPSSPASTDEIDWFFIAMAIEFVVGFGSVVAPLMFSRKVNKWYNNLINRIINCRFCV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1044	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.676	0.833	0.363	6e-99
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.689	0.575	0.338	2e-79
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.732	0.612	0.310	1e-71
Q9FL28	1173	LRR receptor-like serine/	no	no	0.672	0.598	0.310	1e-68
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.695	0.609	0.314	2e-65
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.575	0.552	0.317	7e-64
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.636	0.603	0.301	2e-63
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.619	0.587	0.322	6e-62
Q9LP24	1120	Probable leucine-rich rep	no	no	0.625	0.583	0.324	3e-59
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.615	0.566	0.312	5e-57

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  362 bits (930), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 271/745 (36%), Positives = 391/745 (52%), Gaps = 39/745 (5%)

Query: 309  LRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFV 368
            LR L L+N N  G +P S+GNL +L+ ++L    F G IP S+ NL QL +L L+ N   
Sbjct: 112  LRHLDLTNCNLYGEIPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLT 171

Query: 369  GPIPS-LHMSKNLTHLDLSYNALPGAISST--DWEHLSNLVYVDLRYNSLNGSIPGSLFS 425
            G IPS L     L +L+L  N L G I  +  D + L NL    L  N+L G IP SL +
Sbjct: 172  GEIPSSLGNLSRLVNLELFSNRLVGKIPDSIGDLKQLRNL---SLASNNLIGEIPSSLGN 228

Query: 426  LPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSS 485
            L  L  L L  N+  G +P  S  +   L  +    N L G IP+S  +L  L I +LSS
Sbjct: 229  LSNLVHLVLTHNQLVGEVPA-SIGNLIELRVMSFENNSLSGNIPISFANLTKLSIFVLSS 287

Query: 486  NKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTL-RLASCKLRV----- 539
            N    T     +   HNL   ++SYN+ +        FP  +  +  L S  L+      
Sbjct: 288  NNFTSTFPFD-MSIFHNLEYFDVSYNSFS------GPFPKSLLLIPSLESIYLQENQFTG 340

Query: 540  ---IPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISD 596
                 N  + +KL +L L  N++ G IP  +  + N  L+ L++SHN  +    P +IS 
Sbjct: 341  PIEFANTSSSTKLQDLILGRNRLHGPIPESISRLLN--LEELDISHNNFTGAIPP-TISK 397

Query: 597  LSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSI 656
            L  +  LDL  N L+G +P    +   +  S+NSF+S   ++     +      L++NS 
Sbjct: 398  LVNLLHLDLSKNNLEGEVPACLWRLNTMVLSHNSFSSF--ENTSQEEALIEELDLNSNSF 455

Query: 657  TGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGN 716
             G IP  +C+   L  LDLS N  SG +P+C+   S  +  LNL  N+ SGTL   F   
Sbjct: 456  QGPIPYMICKLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKA 515

Query: 717  CGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNS 776
              L +LD++ NQL G  PKSL NC+ L ++++ +NKI+D FP WLE++ SL VL LRSN 
Sbjct: 516  TELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWLESLPSLHVLNLRSNK 575

Query: 777  FYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEF 836
            FYG +  R     +  L+I+D++ NNF G +P    ++WK M +  +E          EF
Sbjct: 576  FYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTLTEEMDQYMT----EF 631

Query: 837  LKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLS 896
             + AD YY + + + +KG++M   +I   F +IDFS N  +G IPE +G LK L  LNLS
Sbjct: 632  WRYADSYYHE-MEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLS 690

Query: 897  QNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLVGKIPIST 956
             NA T  IP  + NL +LE+LD+S N LSGQIP  LA L+FLS++N SHN L G +P  T
Sbjct: 691  GNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPVPRGT 750

Query: 957  QLQSFLATSFEGNKGLCGPPLNVCRT----NSSKALPSSPASTDEIDWFFIAMAIEFVVG 1012
            Q Q    +SF  N GL G   ++CR     N +  LP   +  +E  + ++A AI +  G
Sbjct: 751  QFQRQKCSSFLDNPGLYGLE-DICRDTGALNPTSQLPEDLSEAEENMFNWVAAAIAYGPG 809

Query: 1013 -FGSVVAPLMFSRKVNKWYNNLINR 1036
                +V    ++   ++W+     R
Sbjct: 810  VLCGLVIGHFYTSHNHEWFTEKFGR 834

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  298 bits (763), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 263/778 (33%), Positives = 379/778 (48%), Gaps = 58/778 (7%)

Query: 223 LSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQV 282
           LSG I   L  L +L  ++L  N+L   +PE   +  NL  L L+  RL G  P +  ++
Sbjct: 132 LSGDIPSQLGSLVNLKSLKLGDNELNGTIPETFGNLVNLQMLALASCRLTGLIPSRFGRL 191

Query: 283 HTLETLDLSGNSLLQGSLPDFPKN-SSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALC 341
             L+TL L  N L +G +P    N +SL     +    +G LP  +  LKNL  L+L   
Sbjct: 192 VQLQTLILQDNEL-EGPIPAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTLNLGDN 250

Query: 342 YFDGSIPTSLANLTQLVYLDLSFNKFVGPIPS-LHMSKNLTHLDLSYNALPGAISSTDWE 400
            F G IP+ L +L  + YL+L  N+  G IP  L    NL  LDLS N L G I    W 
Sbjct: 251 SFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTGVIHEEFW- 309

Query: 401 HLSNLVYVDLRYNSLNGSIPGSLFSL-PMLQQLQLAENKFGGLIP-EFSNASSSALDTID 458
            ++ L ++ L  N L+GS+P ++ S    L+QL L+E +  G IP E SN  S  L  +D
Sbjct: 310 RMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQS--LKLLD 367

Query: 459 LSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAG 518
           LS N L G IP S+F L  L  L L++N L GT+  ++I  L NL +  L +NNL     
Sbjct: 368 LSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLS-SSISNLTNLQEFTLYHNNLEGKVP 426

Query: 519 SDSSFPSQVRTLRLASCKL--RVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQ 576
            +  F  ++  + L   +    +   + N ++L  +D   N++SGEIP+ +  + +  L 
Sbjct: 427 KEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKD--LT 484

Query: 577 YLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIP----YPPPKAVLVDYSNNSFT 632
            L+L  N L     P S+ +   +TV+DL  NQL G+IP    +     + + Y NNS  
Sbjct: 485 RLHLRENELVG-NIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIY-NNSLQ 542

Query: 633 SSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMS 692
            ++PD + N  + T   + S+N   G I   LC +   L  D+++N   G +P  L K S
Sbjct: 543 GNLPDSLINLKNLTRI-NFSSNKFNGSI-SPLCGSSSYLSFDVTENGFEGDIPLELGK-S 599

Query: 693 EILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNK 752
             L  L L  N  +G +  TF     L  LD++ N L G +P  L  C+ L  +DL NN 
Sbjct: 600 TNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNY 659

Query: 753 IRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCI 812
           +    P WL  +  L  L L SN F G++       S   +  + L  N+  G +PQ+  
Sbjct: 660 LSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIF--SLTNILTLFLDGNSLNGSIPQE-- 715

Query: 813 TSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMEL---VKILSIFTSI 869
                                     I +    +A+ +    L   L   +  LS    +
Sbjct: 716 --------------------------IGNLQALNALNLEENQLSGPLPSTIGKLSKLFEL 749

Query: 870 DFSRNNFDGPIPEEIGRLKSLH-GLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQI 928
             SRN   G IP EIG+L+ L   L+LS N  TG IPS I  L +LESLDLS N L G++
Sbjct: 750 RLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEV 809

Query: 929 PIQLANLTFLSFLNLSHNNLVGKIPISTQLQSFLATSFEGNKGLCGPPLNVCRTNSSK 986
           P Q+ ++  L +LNLS+NNL GK  +  Q   + A +F GN GLCG PL+ C    SK
Sbjct: 810 PGQIGDMKSLGYLNLSYNNLEGK--LKKQFSRWQADAFVGNAGLCGSPLSHCNRAGSK 865

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  272 bits (695), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 271/874 (31%), Positives = 416/874 (47%), Gaps = 109/874 (12%)

Query: 148 SGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQALS 207
           +G+ R++ L+L+ L   G+        +S        L  L L   N+  P      ALS
Sbjct: 68  TGLFRVIALNLTGLGLTGS--------ISPWFGRFDNLIHLDLSSNNLVGP---IPTALS 116

Query: 208 SLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLS 267
           +L   L+ L L S  L+G I   L  L ++  +R+  N+L+  +PE L +  NL  L L+
Sbjct: 117 NLT-SLESLFLFSNQLTGEIPSQLGSLVNIRSLRIGDNELVGDIPETLGNLVNLQMLALA 175

Query: 268 HSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTN-FSGVLPDS 326
             RL G  P ++ ++  +++L L  N  L+G +P    N S  T+  +  N  +G +P  
Sbjct: 176 SCRLTGPIPSQLGRLVRVQSLILQDN-YLEGPIPAELGNCSDLTVFTAAENMLNGTIPAE 234

Query: 327 IGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIP-SLHMSKNLTHLDL 385
           +G L+NL  L+LA     G IP+ L  ++QL YL L  N+  G IP SL    NL  LDL
Sbjct: 235 LGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLADLGNLQTLDL 294

Query: 386 SYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPM-LQQLQLAENKFGGLIP 444
           S N L G I    W ++S L+ + L  N L+GS+P S+ S    L+QL L+  +  G IP
Sbjct: 295 SANNLTGEIPEEFW-NMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIP 353

Query: 445 -EFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNL 503
            E S   S  L  +DLS N L G IP ++F+L  L  L L +N L GT+   +I  L NL
Sbjct: 354 VELSKCQS--LKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLS-PSISNLTNL 410

Query: 504 AKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEI 563
             L L +NNL      +   P ++  LR                KL  L L +N+ SGEI
Sbjct: 411 QWLVLYHNNL------EGKLPKEISALR----------------KLEVLFLYENRFSGEI 448

Query: 564 PNWVWEIGN-VSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYP---PP 619
           P    EIGN  SL+ +++  N     + P SI  L  + +L L  N+L G +P       
Sbjct: 449 PQ---EIGNCTSLKMIDMFGNHFEG-EIPPSIGRLKELNLLHLRQNELVGGLPASLGNCH 504

Query: 620 KAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNK 679
           +  ++D ++N  + SIP   G F+       L NNS+ G +P++L   + L  ++LS N+
Sbjct: 505 QLNILDLADNQLSGSIPSSFG-FLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNR 563

Query: 680 LSGKM-PTC---------------------LIKMSEILGVLNLRGNSLSGTLSVTFPGNC 717
           L+G + P C                      +  S+ L  L L  N L+G +  T     
Sbjct: 564 LNGTIHPLCGSSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIR 623

Query: 718 GLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSF 777
            L  LD++ N L GT+P  L  C+ L  +DL NN +    P WL  +S L  L L SN F
Sbjct: 624 ELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQF 683

Query: 778 YGNISCRENGDSWPKLQIVDLASNNFGGRVPQKC--ITSWKAMMSDEDEAQSNFKDVHFE 835
             ++       +  KL ++ L  N+  G +PQ+   + +   +  D+++   +      +
Sbjct: 684 VESLPTELF--NCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGK 741

Query: 836 FLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNL 895
             K+ +     +    +  + +E+ ++  + +++D S NNF G IP  IG L  L  L+L
Sbjct: 742 LSKLYELRL--SRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDL 799

Query: 896 SQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLVGKIPIS 955
           S N LTG +P ++G+++                         L +LN+S NNL GK  + 
Sbjct: 800 SHNQLTGEVPGSVGDMKS------------------------LGYLNVSFNNLGGK--LK 833

Query: 956 TQLQSFLATSFEGNKGLCGPPLNVC---RTNSSK 986
            Q   + A SF GN GLCG PL+ C   R+N+ +
Sbjct: 834 KQFSRWPADSFLGNTGLCGSPLSRCNRVRSNNKQ 867

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  262 bits (669), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 242/779 (31%), Positives = 367/779 (47%), Gaps = 77/779 (9%)

Query: 216 LSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTF 275
           +SL    L G + P++A L  L V+ L  N     +P  +     L  L L  +  +G+ 
Sbjct: 77  VSLLEKQLEGVLSPAIANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSI 136

Query: 276 PEKILQVHTLETLDLSGNSLLQGSLPD-FPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLS 334
           P  I ++  +  LDL  N+LL G +P+   K SSL  +     N +G +P+ +G+L +L 
Sbjct: 137 PSGIWELKNIFYLDLR-NNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQ 195

Query: 335 RLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIP-SLHMSKNLTHLDLSYNALPGA 393
               A  +  GSIP S+  L  L  LDLS N+  G IP       NL  L L+ N L G 
Sbjct: 196 MFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGD 255

Query: 394 ISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSA 453
           I + +  + S+LV ++L  N L G IP  L +L  LQ L++ +NK    IP  S    + 
Sbjct: 256 IPA-EIGNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPS-SLFRLTQ 313

Query: 454 LDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNL 513
           L  + LS N L GPI   I  L +L++L L SN   G     +I  L NL  L + +NN+
Sbjct: 314 LTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNFTGEFP-QSITNLRNLTVLTVGFNNI 372

Query: 514 TVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNV 573
           +    +D                L ++ NL+N      L   DN ++G IP+        
Sbjct: 373 SGELPAD----------------LGLLTNLRN------LSAHDNLLTGPIPS-------- 402

Query: 574 SLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIP--YPPPKAVLVDYSNNSF 631
                              SIS+ + + +LDL  NQ+ G IP  +       +    N F
Sbjct: 403 -------------------SISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFISIGRNHF 443

Query: 632 TSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKM 691
           T  IPDDI N  +     S+++N++TG +   + + + L +L +S N L+G +P  +  +
Sbjct: 444 TGEIPDDIFNCSNLETL-SVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNL 502

Query: 692 SEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNN 751
            + L +L L  N  +G +         L  L +  N L G +P+ + + + L VLDL NN
Sbjct: 503 KD-LNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNN 561

Query: 752 KIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKC 811
           K     P     + SL  L L+ N F G+I       S   L   D++ N   G +P + 
Sbjct: 562 KFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLK--SLSLLNTFDISDNLLTGTIPGEL 619

Query: 812 ITSWKAMMSDEDEAQSNFKD------VHFEFLKIADFYYQD-AVTVTSKGLEMELVKILS 864
           + S K M     +   NF +      +  E  K+      D +  + S  +   L    +
Sbjct: 620 LASLKNM-----QLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKN 674

Query: 865 IFTSIDFSRNNFDGPIPEEIGR-LKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNH 923
           +FT +DFS+NN  G IP+E+ + +  +  LNLS+N+ +G IP + GN+  L SLDLS N+
Sbjct: 675 VFT-LDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNN 733

Query: 924 LSGQIPIQLANLTFLSFLNLSHNNLVGKIPISTQLQSFLATSFEGNKGLCG--PPLNVC 980
           L+G+IP  LANL+ L  L L+ NNL G +P S   ++  A+   GN  LCG   PL  C
Sbjct: 734 LTGEIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDLMGNTDLCGSKKPLKPC 792

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  251 bits (641), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 246/781 (31%), Positives = 368/781 (47%), Gaps = 55/781 (7%)

Query: 213 LQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLN 272
           L+ L L+    SG I P +  L+ L  + L  N L   +P  L++   L  L LS +  +
Sbjct: 91  LRELCLAGNQFSGKIPPEIWNLKHLQTLDLSGNSLTGLLPRLLSELPQLLYLDLSDNHFS 150

Query: 273 GTFPEKI-LQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLK 331
           G+ P    + +  L +LD+S NSL     P+  K S+L  L +   +FSG +P  IGN+ 
Sbjct: 151 GSLPPSFFISLPALSSLDVSNNSLSGEIPPEIGKLSNLSNLYMGLNSFSGQIPSEIGNIS 210

Query: 332 NLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIP-SLHMSKNLTHLDLSYNAL 390
            L       C+F+G +P  ++ L  L  LDLS+N     IP S     NL+ L+L    L
Sbjct: 211 LLKNFAAPSCFFNGPLPKEISKLKHLAKLDLSYNPLKCSIPKSFGELHNLSILNLVSAEL 270

Query: 391 PGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNAS 450
            G I   +  +  +L  + L +NSL+G +P  L  +P+L       N+  G +P +    
Sbjct: 271 IGLIP-PELGNCKSLKSLMLSFNSLSGPLPLELSEIPLLT-FSAERNQLSGSLPSWM-GK 327

Query: 451 SSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSY 510
              LD++ L+ NR  G IP  I D   LK L L+SN L+G++         +L  ++LS 
Sbjct: 328 WKVLDSLLLANNRFSGEIPHEIEDCPMLKHLSLASNLLSGSIPRELCGS-GSLEAIDLSG 386

Query: 511 NNLTVNAGSDSSFPSQVRTLRLASCKLR-VIPNLKNQSKLFNLDLSDNQISGEIPNWVWE 569
           N L+          S +  L L + ++   IP    +  L  LDL  N  +GEIP  +W+
Sbjct: 387 NLLSGTIEEVFDGCSSLGELLLTNNQINGSIPEDLWKLPLMALDLDSNNFTGEIPKSLWK 446

Query: 570 IGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAV---LVDY 626
             N  L     S+N L     P  I + + +  L L  NQL G IP    K     +++ 
Sbjct: 447 STN--LMEFTASYNRLEGY-LPAEIGNAASLKRLVLSDNQLTGEIPREIGKLTSLSVLNL 503

Query: 627 SNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPT 686
           + N F   IP ++G+  S T    L +N++ G IP+ +     L  L LS N LSG +P+
Sbjct: 504 NANMFQGKIPVELGDCTSLTTL-DLGSNNLQGQIPDKITALAQLQCLVLSYNNLSGSIPS 562

Query: 687 CLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVL 746
              K S     + +          ++F  + G+   DL+ N+L G +P+ L  C  LV +
Sbjct: 563 ---KPSAYFHQIEMP--------DLSFLQHHGI--FDLSYNRLSGPIPEELGECLVLVEI 609

Query: 747 DLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGR 806
            L NN +    P  L  +++L +L L  N+  G+I  +E G+S  KLQ ++LA+N   G 
Sbjct: 610 SLSNNHLSGEIPASLSRLTNLTILDLSGNALTGSIP-KEMGNSL-KLQGLNLANNQLNGH 667

Query: 807 VPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIF 866
           +P+    S+  + S           V     K       D     S G   EL       
Sbjct: 668 IPE----SFGLLGSL----------VKLNLTK----NKLDGPVPASLGNLKEL------- 702

Query: 867 TSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSG 926
           T +D S NN  G +  E+  ++ L GL + QN  TG IPS +GNL QLE LD+S N LSG
Sbjct: 703 THMDLSFNNLSGELSSELSTMEKLVGLYIEQNKFTGEIPSELGNLTQLEYLDVSENLLSG 762

Query: 927 QIPIQLANLTFLSFLNLSHNNLVGKIPISTQLQSFLATSFEGNKGLCGPPLNV-CRTNSS 985
           +IP ++  L  L FLNL+ NNL G++P     Q        GNK LCG  +   C+   +
Sbjct: 763 EIPTKICGLPNLEFLNLAKNNLRGEVPSDGVCQDPSKALLSGNKELCGRVVGSDCKIEGT 822

Query: 986 K 986
           K
Sbjct: 823 K 823

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score =  246 bits (628), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 221/696 (31%), Positives = 337/696 (48%), Gaps = 95/696 (13%)

Query: 309 LRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFV 368
           + TL LS +  SG L   IG LK+L  LDL+L  F G +P++L N T L YLDLS N F 
Sbjct: 78  VETLNLSASGLSGQLGSEIGELKSLVTLDLSLNSFSGLLPSTLGNCTSLEYLDLSNNDFS 137

Query: 369 GPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPM 428
           G +P +  S                        L NL ++ L  N+L+G IP S+  L  
Sbjct: 138 GEVPDIFGS------------------------LQNLTFLYLDRNNLSGLIPASVGGLIE 173

Query: 429 LQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKL 488
           L  L+++ N   G IPE    + S L+ + L+ N+L G +P S++ L NL  L +S+N L
Sbjct: 174 LVDLRMSYNNLSGTIPELL-GNCSKLEYLALNNNKLNGSLPASLYLLENLGELFVSNNSL 232

Query: 489 NGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLR-VIPN-LKNQ 546
            G +   +      L  L+LS+N+       +    S + +L +  C L   IP+ +   
Sbjct: 233 GGRLHFGS-SNCKKLVSLDLSFNDFQGGVPPEIGNCSSLHSLVMVKCNLTGTIPSSMGML 291

Query: 547 SKLFNLDLSDNQISGEIPNWVWEIGNVS-LQYLNLSHNLLSSLQRPFSISDLSPITVLDL 605
            K+  +DLSDN++SG IP    E+GN S L+ L L+ N L   + P ++S L  +  L+L
Sbjct: 292 RKVSVIDLSDNRLSGNIPQ---ELGNCSSLETLKLNDNQLQG-EIPPALSKLKKLQSLEL 347

Query: 606 HSNQLQGNIPYPPPK----AVLVDYSNNSFTSSIPDDI---GNFVSFTLF---------- 648
             N+L G IP    K      ++ Y NN+ T  +P ++    +    TLF          
Sbjct: 348 FFNKLSGEIPIGIWKIQSLTQMLVY-NNTLTGELPVEVTQLKHLKKLTLFNNGFYGDIPM 406

Query: 649 ----------FSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVL 698
                       L  N  TG IP  LC  + L +  L  N+L GK+P   I+  + L  +
Sbjct: 407 SLGLNRSLEEVDLLGNRFTGEIPPHLCHGQKLRLFILGSNQLHGKIPAS-IRQCKTLERV 465

Query: 699 NLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFP 758
            L  N LSG L   FP +  L  ++L  N   G++P+SL +C+NL+ +DL  NK+    P
Sbjct: 466 RLEDNKLSGVLP-EFPESLSLSYVNLGSNSFEGSIPRSLGSCKNLLTIDLSQNKLTGLIP 524

Query: 759 WWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAM 818
             L N+ SL +L L  N   G +  + +G    +L   D+ SN+  G +P     SWK++
Sbjct: 525 PELGNLQSLGLLNLSHNYLEGPLPSQLSG--CARLLYFDVGSNSLNGSIPSS-FRSWKSL 581

Query: 819 MSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDG 878
            +                L ++D  +  A+         + +  L   + +  +RN F G
Sbjct: 582 ST----------------LVLSDNNFLGAIP--------QFLAELDRLSDLRIARNAFGG 617

Query: 879 PIPEEIGRLKSL-HGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTF 937
            IP  +G LKSL +GL+LS N  TG IP+ +G L  LE L++S N L+G + + L +L  
Sbjct: 618 KIPSSVGLLKSLRYGLDLSANVFTGEIPTTLGALINLERLNISNNKLTGPLSV-LQSLKS 676

Query: 938 LSFLNLSHNNLVGKIPISTQLQSFLATSFEGNKGLC 973
           L+ +++S+N   G IP++    S   + F GN  LC
Sbjct: 677 LNQVDVSYNQFTGPIPVNLLSNS---SKFSGNPDLC 709

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  244 bits (623), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 250/830 (30%), Positives = 371/830 (44%), Gaps = 165/830 (19%)

Query: 174 NLSGLLQNLAELRELYLDG--------ANISAPGIEWCQALSSLV---PKLQVLSLSSCY 222
           NL G  Q L E++  ++D         +N S P   W   + S     P++  L+LSS  
Sbjct: 28  NLEG--QYLLEIKSKFVDAKQNLRNWNSNDSVP-CGWTGVMCSNYSSDPEVLSLNLSSMV 84

Query: 223 LSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQV 282
           LSG + PS+  L                         +L  L LS++ L+G  P++I   
Sbjct: 85  LSGKLSPSIGGL------------------------VHLKQLDLSYNGLSGKIPKEIGNC 120

Query: 283 HTLETLDLSGNSLLQGSLP-DFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALC 341
            +LE L L+ N    G +P +  K  SL  L++ N   SG LP  IGNL +LS+L     
Sbjct: 121 SSLEILKLNNNQF-DGEIPVEIGKLVSLENLIIYNNRISGSLPVEIGNLLSLSQLVTYSN 179

Query: 342 YFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEH 401
              G +P S+ NL +L       N   G +PS                        +   
Sbjct: 180 NISGQLPRSIGNLKRLTSFRAGQNMISGSLPS------------------------EIGG 215

Query: 402 LSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIP-EFSNASSSALDTIDLS 460
             +LV + L  N L+G +P  +  L  L Q+ L EN+F G IP E SN +S  L+T+ L 
Sbjct: 216 CESLVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIPREISNCTS--LETLALY 273

Query: 461 GNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSD 520
            N+L GPIP  + DL++L+ L L  N LNGT+                            
Sbjct: 274 KNQLVGPIPKELGDLQSLEFLYLYRNGLNGTI---------------------------- 305

Query: 521 SSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVS-LQYLN 579
              P ++  L  A                  +D S+N ++GEIP    E+GN+  L+ L 
Sbjct: 306 ---PREIGNLSYA----------------IEIDFSENALTGEIP---LELGNIEGLELLY 343

Query: 580 LSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIP--YPPPKAV-LVDYSNNSFTSSIP 636
           L  N L+    P  +S L  ++ LDL  N L G IP  +   + + ++    NS + +IP
Sbjct: 344 LFENQLTG-TIPVELSTLKNLSKLDLSINALTGPIPLGFQYLRGLFMLQLFQNSLSGTIP 402

Query: 637 DDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILG 696
             +G + S      +S+N ++G IP  LC    +++L+L  N LSG +PT  I   + L 
Sbjct: 403 PKLG-WYSDLWVLDMSDNHLSGRIPSYLCLHSNMIILNLGTNNLSGNIPTG-ITTCKTLV 460

Query: 697 VLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDT 756
            L L  N+L G           +  ++L  N+  G++P+ + NC  L  L L +N     
Sbjct: 461 QLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPREVGNCSALQRLQLADNGFTGE 520

Query: 757 FPWWLENISSLRVLVLRSNSFYGNI-----SCRENGDSWPKLQIVDLASNNFGGRVPQKC 811
            P  +  +S L  L + SN   G +     +C+        LQ +D+  NNF G +P + 
Sbjct: 521 LPREIGMLSQLGTLNISSNKLTGEVPSEIFNCK-------MLQRLDMCCNNFSGTLPSEV 573

Query: 812 ITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDF 871
            + ++                  E LK+++      + V         +  LS  T +  
Sbjct: 574 GSLYQ-----------------LELLKLSNNNLSGTIPVA--------LGNLSRLTELQM 608

Query: 872 SRNNFDGPIPEEIGRLKSLH-GLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPI 930
             N F+G IP E+G L  L   LNLS N LTG IP  + NL  LE L L+ N+LSG+IP 
Sbjct: 609 GGNLFNGSIPRELGSLTGLQIALNLSYNKLTGEIPPELSNLVMLEFLLLNNNNLSGEIPS 668

Query: 931 QLANLTFLSFLNLSHNNLVGKIPISTQLQSFLATSFEGNKGLCGPPLNVC 980
             ANL+ L   N S+N+L G IP+   L++   +SF GN+GLCGPPLN C
Sbjct: 669 SFANLSSLLGYNFSYNSLTGPIPL---LRNISMSSFIGNEGLCGPPLNQC 715

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  239 bits (611), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 230/713 (32%), Positives = 348/713 (48%), Gaps = 66/713 (9%)

Query: 307  SSLRTLM---LSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLS 363
            + LRT+    L+  N SG L   I  L  L +L+++  +  G IP  L+    L  LDL 
Sbjct: 64   THLRTVTSVDLNGMNLSGTLSPLICKLHGLRKLNVSTNFISGPIPQDLSLCRSLEVLDLC 123

Query: 364  FNKFVGPIP-SLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGS 422
             N+F G IP  L M   L  L L  N L G+I      +LS+L  + +  N+L G IP S
Sbjct: 124  TNRFHGVIPIQLTMIITLKKLYLCENYLFGSIPR-QIGNLSSLQELVIYSNNLTGVIPPS 182

Query: 423  LFSLPMLQQLQLAENKFGGLIP-EFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKIL 481
            +  L  L+ ++   N F G+IP E S   S  L  + L+ N LEG +P  +  L+NL  L
Sbjct: 183  MAKLRQLRIIRAGRNGFSGVIPSEISGCES--LKVLGLAENLLEGSLPKQLEKLQNLTDL 240

Query: 482  ILSSNKLNGTV--QLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKL-- 537
            IL  N+L+G +   +  I RL  LA   L  N  T +   +    ++++ L L + +L  
Sbjct: 241  ILWQNRLSGEIPPSVGNISRLEVLA---LHENYFTGSIPREIGKLTKMKRLYLYTNQLTG 297

Query: 538  ---RVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNV-SLQYLNLSHNLLSSLQRPFS 593
               R I NL + +++   D S+NQ++G IP    E G++ +L+ L+L  N+L     P  
Sbjct: 298  EIPREIGNLIDAAEI---DFSENQLTGFIPK---EFGHILNLKLLHLFENILLG-PIPRE 350

Query: 594  ISDLSPITVLDLHSNQLQGNIPYPP---PKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFS 650
            + +L+ +  LDL  N+L G IP      P  V +   +N     IP  IG + +F++   
Sbjct: 351  LGELTLLEKLDLSINRLNGTIPQELQFLPYLVDLQLFDNQLEGKIPPLIGFYSNFSVL-D 409

Query: 651  LSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLS 710
            +S NS++G IP   CR + L++L L  NKLSG +P  L K  + L  L L  N L+G+L 
Sbjct: 410  MSANSLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRDL-KTCKSLTKLMLGDNQLTGSLP 468

Query: 711  VTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVL 770
            +       L  L+L+ N L G +   L   +NL  L L NN      P  + N++ +   
Sbjct: 469  IELFNLQNLTALELHQNWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIGNLTKIVGF 528

Query: 771  VLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFK 830
             + SN   G+I  +E G S   +Q +DL+ N F G +                 AQ   +
Sbjct: 529  NISSNQLTGHIP-KELG-SCVTIQRLDLSGNKFSGYI-----------------AQELGQ 569

Query: 831  DVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSL 890
             V+ E L+++D      +  +           L+    +    N     IP E+G+L SL
Sbjct: 570  LVYLEILRLSDNRLTGEIPHS--------FGDLTRLMELQLGGNLLSENIPVELGKLTSL 621

Query: 891  H-GLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLV 949
               LN+S N L+G IP ++GNLQ LE L L+ N LSG+IP  + NL  L   N+S+NNLV
Sbjct: 622  QISLNISHNNLSGTIPDSLGNLQMLEILYLNDNKLSGEIPASIGNLMSLLICNISNNNLV 681

Query: 950  GKIPISTQLQSFLATSFEGNKGLCGPPLNVCRTNSSKALPSSPASTDEIDWFF 1002
            G +P +   Q   +++F GN GLC    + C+       P  P S  +++W  
Sbjct: 682  GTVPDTAVFQRMDSSNFAGNHGLCNSQRSHCQ-------PLVPHSDSKLNWLI 727

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  231 bits (588), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 228/702 (32%), Positives = 337/702 (48%), Gaps = 49/702 (6%)

Query: 308 SLRTLMLSNTNFSGVLPD-SIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNK 366
           S+  L L+NT   G   D    +L NL+ +DL++    G+IP    NL++L+Y DLS N 
Sbjct: 78  SIEELNLTNTGIEGTFQDFPFISLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNH 137

Query: 367 FVGPI-PSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFS 425
             G I PSL   KNLT L L  N L   I S +  ++ ++  + L  N L GSIP SL +
Sbjct: 138 LTGEISPSLGNLKNLTVLYLHQNYLTSVIPS-ELGNMESMTDLALSQNKLTGSIPSSLGN 196

Query: 426 LPMLQQLQLAENKFGGLIP-EFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILS 484
           L  L  L L EN   G+IP E  N  S  +  + LS N+L G IP ++ +L+NL +L L 
Sbjct: 197 LKNLMVLYLYENYLTGVIPPELGNMES--MTDLALSQNKLTGSIPSTLGNLKNLMVLYLY 254

Query: 485 SNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVI---- 540
            N L G +    I  + ++  L LS N LT   GS  S    ++ L L S     +    
Sbjct: 255 ENYLTGVIP-PEIGNMESMTNLALSQNKLT---GSIPSSLGNLKNLTLLSLFQNYLTGGI 310

Query: 541 -PNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSP 599
            P L N   + +L+LS+N+++G IP+ +  + N+++ YL    N L+ +  P  + ++  
Sbjct: 311 PPKLGNIESMIDLELSNNKLTGSIPSSLGNLKNLTILYL--YENYLTGVIPP-ELGNMES 367

Query: 600 ITVLDLHSNQLQGNIPYP---PPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSI 656
           +  L L++N+L G+IP           +    N  T  IP ++GN  S  +   LS N +
Sbjct: 368 MIDLQLNNNKLTGSIPSSFGNLKNLTYLYLYLNYLTGVIPQELGNMESM-INLDLSQNKL 426

Query: 657 TGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGN 716
           TG +P++      L  L L  N LSG +P  +   S  L  L L  N+ +G    T    
Sbjct: 427 TGSVPDSFGNFTKLESLYLRVNHLSGAIPPGVANSSH-LTTLILDTNNFTGFFPETVCKG 485

Query: 717 CGLHTLDLNGNQLGGTVPKSLANCRNLVVLD-LGNNKIRDTFPWWLENISSLRVLVLRSN 775
             L  + L+ N L G +PKSL +C++L+    LGN    D F  +      L  +    N
Sbjct: 486 RKLQNISLDYNHLEGPIPKSLRDCKSLIRARFLGNKFTGDIFEAF-GIYPDLNFIDFSHN 544

Query: 776 SFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFE 835
            F+G IS   N +  PKL  + +++NN  G +P +    W      E +  +N  ++  E
Sbjct: 545 KFHGEISS--NWEKSPKLGALIMSNNNITGAIPTEI---WNMTQLVELDLSTN--NLFGE 597

Query: 836 FLK-IADFYYQDAVTVTSKGLEMELVKILSIFT---SIDFSRNNFDGPIPEEIGRLKSLH 891
             + I +      + +    L   +   LS  T   S+D S NNF   IP+       LH
Sbjct: 598 LPEAIGNLTNLSRLRLNGNQLSGRVPAGLSFLTNLESLDLSSNNFSSEIPQTFDSFLKLH 657

Query: 892 GLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLVGK 951
            +NLS+N   G IP  +  L QL  LDLS N L G+IP QL++L  L  L+LSHNNL G 
Sbjct: 658 DMNLSRNKFDGSIPR-LSKLTQLTQLDLSHNQLDGEIPSQLSSLQSLDKLDLSHNNLSGL 716

Query: 952 IPISTQLQSFLATSFEGNKGLCGPPLNVCRTNSSKALPSSPA 993
           IP          T+FEG   L    +++        LP +P 
Sbjct: 717 IP----------TTFEGMIALTN--VDISNNKLEGPLPDTPT 746

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  223 bits (569), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 224/716 (31%), Positives = 339/716 (47%), Gaps = 73/716 (10%)

Query: 306 NSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFN 365
           N  +  + L     SG + D I  L+ L +L L    F+G+IPTSLA  T+L+ + L +N
Sbjct: 67  NHRVTEIRLPRLQLSGRISDRISGLRMLRKLSLRSNSFNGTIPTSLAYCTRLLSVFLQYN 126

Query: 366 KFVGPIP-----------------------SLHMSKNLTHLDLSYNALPGAISSTDWEHL 402
              G +P                        + +  +L  LD+S N   G I S    +L
Sbjct: 127 SLSGKLPPAMRNLTSLEVFNVAGNRLSGEIPVGLPSSLQFLDISSNTFSGQIPS-GLANL 185

Query: 403 SNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPE-FSNASSSALDTIDLSG 461
           + L  ++L YN L G IP SL +L  LQ L L  N   G +P   SN SS  L  +  S 
Sbjct: 186 TQLQLLNLSYNQLTGEIPASLGNLQSLQYLWLDFNLLQGTLPSAISNCSS--LVHLSASE 243

Query: 462 NRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDS 521
           N + G IP +   L  L++L LS+N  +GTV  +      +L  ++L +N          
Sbjct: 244 NEIGGVIPAAYGALPKLEVLSLSNNNFSGTVPFSLFCN-TSLTIVQLGFN---------- 292

Query: 522 SFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLS 581
           +F   VR    A+C+          + L  LDL +N+ISG  P W+  I  +SL+ L++S
Sbjct: 293 AFSDIVRPETTANCR----------TGLQVLDLQENRISGRFPLWLTNI--LSLKNLDVS 340

Query: 582 HNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAV---LVDYSNNSFTSSIPDD 638
            NL S  + P  I +L  +  L L +N L G IP    +     ++D+  NS    IP+ 
Sbjct: 341 GNLFSG-EIPPDIGNLKRLEELKLANNSLTGEIPVEIKQCGSLDVLDFEGNSLKGQIPEF 399

Query: 639 IGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVL 698
           +G   +  +  SL  NS +G +P ++   + L  L+L +N L+G  P  L+ ++  L  L
Sbjct: 400 LGYMKALKV-LSLGRNSFSGYVPSSMVNLQQLERLNLGENNLNGSFPVELMALTS-LSEL 457

Query: 699 NLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFP 758
           +L GN  SG + V+      L  L+L+GN   G +P S+ N   L  LDL    +    P
Sbjct: 458 DLSGNRFSGAVPVSISNLSNLSFLNLSGNGFSGEIPASVGNLFKLTALDLSKQNMSGEVP 517

Query: 759 WWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAM 818
             L  + +++V+ L+ N+F G +   E   S   L+ V+L+SN+F G +PQ         
Sbjct: 518 VELSGLPNVQVIALQGNNFSGVVP--EGFSSLVSLRYVNLSSNSFSGEIPQ-------TF 568

Query: 819 MSDEDEAQSNFKDVHFEFL---KIADFYYQDAVTVTSKGLEMELVKILSIFTS---IDFS 872
                    +  D H       +I +    + + + S  L   +   LS       +D  
Sbjct: 569 GFLRLLVSLSLSDNHISGSIPPEIGNCSALEVLELRSNRLMGHIPADLSRLPRLKVLDLG 628

Query: 873 RNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQL 932
           +NN  G IP EI +  SL+ L+L  N L+G IP +   L  L  +DLS+N+L+G+IP  L
Sbjct: 629 QNNLSGEIPPEISQSSSLNSLSLDHNHLSGVIPGSFSGLSNLTKMDLSVNNLTGEIPASL 688

Query: 933 ANLTF-LSFLNLSHNNLVGKIPISTQLQSFLATSFEGNKGLCGPPLNVCRTNSSKA 987
           A ++  L + N+S NNL G+IP S   +    + F GN  LCG PLN  R  SS A
Sbjct: 689 ALISSNLVYFNVSSNNLKGEIPASLGSRINNTSEFSGNTELCGKPLNR-RCESSTA 743

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1044
359481298	1070	PREDICTED: LRR receptor-like serine/thre	0.989	0.965	0.586	0.0
224139184	1032	predicted protein [Populus trichocarpa]	0.980	0.992	0.575	0.0
359481296	1075	PREDICTED: receptor-like protein 12-like	0.990	0.961	0.578	0.0
359481300	1054	PREDICTED: leucine-rich repeat receptor	0.965	0.956	0.594	0.0
359481304	1057	PREDICTED: LRR receptor-like serine/thre	0.972	0.960	0.574	0.0
147806063	1032	hypothetical protein VITISV_032508 [Viti	0.953	0.964	0.590	0.0
255579302	1060	serine/threonine-protein kinase bri1, pu	0.985	0.970	0.560	0.0
214011438	1128	GbVe [Gossypium barbadense]	0.985	0.912	0.560	0.0
359481293	1197	PREDICTED: leucine-rich repeat receptor	0.977	0.852	0.580	0.0
350535939	1139	verticillium wilt disease resistance pro	0.995	0.912	0.542	0.0

>gi|359481298|ref|XP_003632604.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score = 1134 bits (2932), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 616/1051 (58%), Positives = 757/1051 (72%), Gaps = 18/1051 (1%)

Query: 1    MSVLQLSWLFLLTMLTNFGGINMVLVSGQCQSD-------QQSLLLQMKSSLVFNSSLSF 53
            M +   SWL+ L + +   GI++ LVSG+C SD       Q SLLLQ+K++L FN + S 
Sbjct: 1    MRIALFSWLYFLPLCSIVFGIHVALVSGECLSDGSICLEDQMSLLLQLKNTLKFNVAASS 60

Query: 54   RMVQWSQSNDCCTWSGVDCDEAGRVIGLDLSEESISAGIDNSSPLFSLKYLQSLNLAFNM 113
            ++V W+ S DCC+W GV  D  G V+ LDLS +SI  G +N+S +FSL+YLQSLNLA N 
Sbjct: 61   KLVSWNPSMDCCSWGGVTWDATGHVVALDLSSQSIYGGFNNTSSIFSLQYLQSLNLADNS 120

Query: 114  FNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNRFGAP-LKLEN 172
            FN+++IPSG G L NL  LNLSNAGF+GQIPI+VS +T+LVT+D S     G P LKLEN
Sbjct: 121  FNSSQIPSGFGKLGNLMYLNLSNAGFSGQIPIEVSCLTKLVTIDFSVF-YLGVPTLKLEN 179

Query: 173  PNLSGLLQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLA 232
            PNL  L+QNL ELRELYL+G NISA G EWCQALSS VP LQVLSL SCYLSGP+  SL 
Sbjct: 180  PNLRMLVQNLTELRELYLNGVNISAQGKEWCQALSSSVPNLQVLSLPSCYLSGPLDSSLQ 239

Query: 233  KLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSG 292
            KL+SLS IRLD N+  +PVPEFLA+F NLT LRLS   LNGTFPEKI QV TL+ LDLS 
Sbjct: 240  KLRSLSSIRLDGNNFSAPVPEFLANFSNLTQLRLSSCGLNGTFPEKIFQVPTLQILDLSN 299

Query: 293  NSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLA 352
            N LL GSLP+FP+N SL TL+L +T FSG +P+SIGNLK L+R++LA C F G IP S A
Sbjct: 300  NKLLLGSLPEFPQNGSLETLVLPDTKFSGKVPNSIGNLKRLTRIELARCNFSGPIPNSTA 359

Query: 353  NLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRY 412
            NL QLVYLDLS NKF GPIP   +SKNLT ++LS+N L G I S+  + L NLV +DLR 
Sbjct: 360  NLAQLVYLDLSENKFSGPIPPFSLSKNLTRINLSHNYLTGPIPSSHLDGLVNLVILDLRD 419

Query: 413  NSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSI 472
            NSLNGS+P  LFSLP LQ++QL+ N+F G + +FS    S LDT+DLS N LEG IP+SI
Sbjct: 420  NSLNGSLPMPLFSLPSLQKIQLSNNQFSGPLSKFS-VVPSVLDTLDLSSNNLEGQIPVSI 478

Query: 473  FDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAG---SDSSFPSQVRT 529
            FDL+ L IL LSSNK NGTV L++ Q+L NL  L LSYNNL++N+            + T
Sbjct: 479  FDLQCLNILDLSSNKFNGTVLLSSFQKLGNLTTLSLSYNNLSINSSVGNPTLPLLLNLTT 538

Query: 530  LRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQ 589
            L+LASCKLR +P+L  QS+L  LDLSDNQI G IPNW+W+IGN SL +LNLSHNLL  LQ
Sbjct: 539  LKLASCKLRTLPDLSTQSRLTYLDLSDNQICGNIPNWIWKIGNCSLAHLNLSHNLLEDLQ 598

Query: 590  RPFSISDLSP-ITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLF 648
             P  +S+ +P +++LDLHSNQL G IP PP     VDYS+N FTSSIPD IG ++SFT+F
Sbjct: 599  EP--LSNFTPYLSILDLHSNQLHGQIPTPPQFCSYVDYSDNRFTSSIPDGIGVYISFTIF 656

Query: 649  FSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGT 708
            FSLS N+ITG IP ++C A YL VLD S N LSGK+P+CLI+    LGVLNLR N+ SG 
Sbjct: 657  FSLSKNNITGSIPRSICNATYLQVLDFSDNHLSGKIPSCLIEYGT-LGVLNLRRNNFSGA 715

Query: 709  LSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLR 768
            +   FP NC L TLDL+ N + G +P SLANC  L VL+LGNN++  TFP  L+NI++LR
Sbjct: 716  IPGKFPVNCLLQTLDLSRNHIEGKIPGSLANCTALEVLNLGNNQMNGTFPCLLKNITTLR 775

Query: 769  VLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSN 828
            VLVLR N+F G+I C ++  +W  LQIVDLA NNF G++P  C ++W AMM+ E+E QS 
Sbjct: 776  VLVLRGNNFQGSIGCCKSNSTWAMLQIVDLAFNNFSGKLPATCFSTWTAMMAGENEVQSK 835

Query: 829  FKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLK 888
             K + F  L+ +  YYQDAVTVTSKGLEMELVK+L+++TSID S NNF G IPE +G   
Sbjct: 836  LKHLQFRVLQFSQLYYQDAVTVTSKGLEMELVKVLTLYTSIDLSCNNFQGDIPEVMGNFT 895

Query: 889  SLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNL 948
            SL+ LNLS N  TG IPS+IGNL+QLESLDLS N LSG+IP QLANL FLS LNLS N L
Sbjct: 896  SLYVLNLSHNGFTGHIPSSIGNLRQLESLDLSQNRLSGEIPTQLANLNFLSVLNLSFNQL 955

Query: 949  VGKIPISTQLQSFLATSFEGNKGLCGPPLNVCRTNSSKALPS-SPASTDEIDWFFIAMAI 1007
            VG+IP   Q+Q+F  TS+EGNK LCG PL++  T+           S  EI W +IA  I
Sbjct: 956  VGRIPPGNQMQTFSETSYEGNKELCGWPLDLSCTDPPPEFDDRHSGSRMEIKWEYIAPEI 1015

Query: 1008 EFVVGFGSVVAPLMFSRKVNKWYNNLINRII 1038
             FV G G V+ PL+  R+  K Y   ++RI+
Sbjct: 1016 GFVTGLGIVIWPLVLCRRWRKCYYKHVDRIL 1046

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139184|ref|XP_002323001.1| predicted protein [Populus trichocarpa] gi|222867631|gb|EEF04762.1| predicted protein [Populus trichocarpa]

 Score = 1125 bits (2910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 599/1040 (57%), Positives = 772/1040 (74%), Gaps = 16/1040 (1%)

Query: 6    LSWLFLLTMLTNFGGINMVLVSGQCQSDQQSLLLQMKSSLVFNSSLSFRMVQWSQSNDCC 65
             +WLFL+  LT F G+N+ LVSGQC+ DQQSLLLQ+K++LVF+ S+S ++V+W+ + DCC
Sbjct: 1    FTWLFLIPFLTIFFGVNVCLVSGQCRKDQQSLLLQLKNTLVFDQSVSAKLVKWNSTPDCC 60

Query: 66   TWSGVDCDE-AGRVIGLDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLG 124
             W G+ CDE +GRVI LDLS E I+ G+ +SS L+ L++LQSLNL+FN F +T +P G  
Sbjct: 61   DWPGITCDEGSGRVISLDLSSERITGGLGDSSGLYRLQFLQSLNLSFNSF-STALPVGFA 119

Query: 125  SLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNRFGAP-LKLENPNLSGLLQNLA 183
            +LT+L +LNLSNAGF GQIP   S +T+LV+LDLS+L+  G+P LKLE PN + L+QNL 
Sbjct: 120  NLTDLISLNLSNAGFTGQIPNDFSKLTKLVSLDLSALSFPGSPALKLEQPNFATLVQNLT 179

Query: 184  ELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLD 243
             L EL LDG NISA G +WC+ALSS +P L+VLS+S+CYLSGP+  SLAKLQSLS+IRL 
Sbjct: 180  HLTELLLDGVNISAHGNDWCKALSSSLPNLKVLSMSNCYLSGPLDASLAKLQSLSIIRLS 239

Query: 244  QNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDF 303
             N+L +PVPEFLA++  LT+L+LS  +LNG FP+ I QV TLE LDL  N  LQGS P+F
Sbjct: 240  GNNLSTPVPEFLANYSKLTALQLSSCQLNGIFPQAIFQVPTLEILDLQYNKFLQGSFPEF 299

Query: 304  PKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLS 363
             +N SLRTL+LSNTNFSG LP SIG L+ LSR++LA   F G IP S+ANLTQL YLDL 
Sbjct: 300  HQNLSLRTLLLSNTNFSGTLPQSIGELQKLSRIELAGNNFTGPIPNSMANLTQLFYLDLL 359

Query: 364  FNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSL 423
             NKF G +PS   SKNLT++D+S+N L G I S  WE L +L YVDL YN+ NGSIP SL
Sbjct: 360  SNKFTGTLPSFRKSKNLTYVDVSHNQLKGEIPSGHWEGLRSLTYVDLGYNAFNGSIPSSL 419

Query: 424  FSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILIL 483
            F++P LQ++QL+ N+FGG IPEF N SSS LDT+DLS N+LEGPIP S+F L  L +L L
Sbjct: 420  FAIPSLQKIQLSNNRFGGQIPEFPNVSSSLLDTLDLSSNKLEGPIPSSVFGLAKLNVLEL 479

Query: 484  SSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPS---QVRTLRLASCKLRVI 540
            SSN LN T+QL  IQ+L NL  L LSYNNLTV +   +S  S   Q++ LRLASC L + 
Sbjct: 480  SSNMLNDTLQLHWIQKLPNLTTLGLSYNNLTVKSSGGNSNMSSLPQIKKLRLASCDLGMF 539

Query: 541  PNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPI 600
            P+L+NQSKLF+LDLSDNQI+G +P W+ E+  + LQYLNLS NLL  L+RP S+  LS  
Sbjct: 540  PDLRNQSKLFHLDLSDNQITGPVPGWISEL--ILLQYLNLSRNLLVDLERPLSLPGLS-- 595

Query: 601  TVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVI 660
             +LDLH NQLQG+IP PP     VDYS+N F+S IP +IGN+ +FTLFFSLSNN +TG I
Sbjct: 596  -ILDLHHNQLQGSIPVPPSYITYVDYSSNKFSSFIPPNIGNYFNFTLFFSLSNNHLTGEI 654

Query: 661  PETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLH 720
            P+++C  ++L VLDLS N LSG +P+CLI   + L VLNLR N+  G +   FP +C L 
Sbjct: 655  PQSICNTEWLQVLDLSNNSLSGAIPSCLIDKIKTLRVLNLRRNNFDGIIPDKFPRSCELK 714

Query: 721  TLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGN 780
            TLDL+GN L G VPKSLANC  L VLDLGNN+I D+FP  L++ISS RVLVLR+N F G+
Sbjct: 715  TLDLSGNNLQGQVPKSLANCTMLEVLDLGNNQINDSFPCLLKSISSFRVLVLRNNMFSGH 774

Query: 781  ISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIA 840
            I C +   +WP+LQIVDLA N+F G +   C+ +W+ MM   + +      + ++ L++ 
Sbjct: 775  IGCPQIEGTWPRLQIVDLAFNHFIGNLSDICLKTWEGMMEGGNRS---LDHIRYDPLQLT 831

Query: 841  D-FYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNA 899
            +  YYQD++TVT KGLE+ELVKIL++FTS DFS NNF+GPIP+ IG+  +L+ LNLS N 
Sbjct: 832  NGLYYQDSITVTVKGLELELVKILTVFTSADFSSNNFEGPIPDAIGKFNALYVLNLSHNV 891

Query: 900  LTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLVGKIPISTQLQ 959
            LTG IPS++GNL QLESLDLS N LSGQIP QL +LTFLS LNLS+N LVG+IP   Q  
Sbjct: 892  LTGQIPSSLGNLSQLESLDLSSNQLSGQIPAQLTSLTFLSVLNLSYNRLVGRIPTGNQFL 951

Query: 960  SFLATSFEGNKGLCGPPLNVCRTNSSKALPSSPAST-DEIDWFFIAMAIEFVVGFGSVVA 1018
            +F + SFEGN+GLCGPPL +  +N++++  +  ++   E DW FI   + F +G G VVA
Sbjct: 952  TFSSDSFEGNQGLCGPPLKLACSNTNESNSTRGSNQRKEFDWQFIVPGLGFGLGSGIVVA 1011

Query: 1019 PLMFSRKVNKWYNNLINRII 1038
            PL+FS+K+NK Y++ I++I+
Sbjct: 1012 PLLFSKKINKCYDDRIDKIL 1031

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481296|ref|XP_003632603.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score = 1109 bits (2869), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 610/1055 (57%), Positives = 758/1055 (71%), Gaps = 21/1055 (1%)

Query: 1    MSVLQLSWLFLLTMLTNFGGINMVLVSGQCQSD-------QQSLLLQMKSSLVFNSSLSF 53
            M +   SWL+ L + +   GI++ LVSG+C SD       Q SLLLQ+K++L FN + S 
Sbjct: 1    MRIALFSWLYFLPLCSIVFGIHVALVSGECLSDGSICLEDQMSLLLQLKNTLKFNVAASS 60

Query: 54   RMVQWSQSNDCCTWSGVDCDEAGRVIGLDLSEESISAGIDNSSPLFSLKYLQSLNLAFNM 113
            ++V W+ S DCC+W GV  D  G V+ LDLS +SI  G +NSS +FSL+YLQSLNLA N 
Sbjct: 61   KLVSWNPSTDCCSWGGVTWDATGHVVALDLSSQSIYGGFNNSSSIFSLQYLQSLNLANNT 120

Query: 114  FNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNRFGAP-LKLEN 172
            F +++IPSG   L +L  LNLSNAGF+GQIPI++S +T+LVT+D S     G P L LEN
Sbjct: 121  FYSSQIPSGFSKLDHLIYLNLSNAGFSGQIPIEISCLTKLVTIDFSVFYLPGVPTLTLEN 180

Query: 173  PNLSGLLQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLA 232
            PNL  L+QNL ELRELYL+G NISA G EWCQALSS VP LQVLSL+SCYL GP+  SL 
Sbjct: 181  PNLRMLVQNLTELRELYLNGVNISAQGKEWCQALSSSVPNLQVLSLASCYLYGPLDSSLQ 240

Query: 233  KLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSG 292
            KL+SLS IRLD N+  +PV EFLA+F NLT LRLS   L GTFPEKI QV TL+ LDLS 
Sbjct: 241  KLRSLSSIRLDSNNFSAPVLEFLANFSNLTQLRLSSCGLYGTFPEKIFQVPTLQILDLSN 300

Query: 293  NSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLA 352
            N LL GSLP+FP+N SL TL+LS+T FSG +P SIGNLK L+R++LA C F G+IP S+A
Sbjct: 301  NKLLLGSLPEFPQNGSLGTLVLSDTKFSGKVPYSIGNLKRLTRIELAGCDFSGAIPNSMA 360

Query: 353  NLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRY 412
            +LTQLVYLD S+NKF GPIP   +SKNLT ++LS+N L G I S+  + L NLV +DLR 
Sbjct: 361  DLTQLVYLDSSYNKFSGPIPPFSLSKNLTRINLSHNYLTGPIPSSHLDGLVNLVTLDLRD 420

Query: 413  NSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSI 472
            NSLNGS+P  LFSLP LQ++QL+ N+F G + +FS    S L+T+DLS N LEGPIP+S+
Sbjct: 421  NSLNGSLPMLLFSLPSLQKIQLSNNQFSGPLSKFSVVPFSVLETLDLSSNNLEGPIPISV 480

Query: 473  FDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAG---SDSSFPSQVRT 529
            FDL+ L IL LSSNK NGTV L++ Q L NL  L LSYNNL++N+            + T
Sbjct: 481  FDLQCLNILDLSSNKFNGTVLLSSFQNLGNLTTLSLSYNNLSINSSVGNPTLPLLLNLTT 540

Query: 530  LRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQ 589
            L+LASCKLR +P+L  QS+L +LDLSDNQI G IPNW+W+ GN SL +LNLSHNLL  LQ
Sbjct: 541  LKLASCKLRTLPDLSTQSRLTHLDLSDNQIPGSIPNWIWKNGNGSLLHLNLSHNLLEDLQ 600

Query: 590  RPFSISDLSP-ITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLF 648
              F  S+ +P +++LDLHSNQL G IP PP  ++ VDYS+NSF SSIPDDIG ++SFTLF
Sbjct: 601  ETF--SNFTPYLSILDLHSNQLHGQIPTPPQFSIYVDYSDNSFNSSIPDDIGIYISFTLF 658

Query: 649  FSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGT 708
            FSLS N+ITGVIPE++C A YL VLD S N  SGK+P+CLI+ +E L VLNL  N  +GT
Sbjct: 659  FSLSKNNITGVIPESICNASYLQVLDFSDNAFSGKIPSCLIQ-NEALAVLNLGRNKFNGT 717

Query: 709  LSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLR 768
            +   F   C L TLDLN N L G + +SLANC+ L +L+LGNN+I D FP WL+NI++LR
Sbjct: 718  IPGEFRHKCLLQTLDLNENLLEGNITESLANCKELEILNLGNNQIDDIFPCWLKNITNLR 777

Query: 769  VLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSN 828
            VLVLR N F+G I C  +  +W  LQIVDLA NNF G++P+KC ++W AMM+ E+E QS 
Sbjct: 778  VLVLRGNKFHGPIGCLRSNSTWAMLQIVDLADNNFSGKLPEKCFSTWTAMMAGENEVQSK 837

Query: 829  FKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLK 888
             K + F  L+ +  YYQDAVTVTSKGLEMELVK+L+++TSID S NNF G IPE +G   
Sbjct: 838  LKHLQFRVLQFSQLYYQDAVTVTSKGLEMELVKVLTLYTSIDLSCNNFQGDIPEVMGNFT 897

Query: 889  SLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNL 948
            SL+GLNLS N  TG IPS+IGNL+QLESLDLS N LSG+IP QLANL FLS LNLS N L
Sbjct: 898  SLYGLNLSHNGFTGHIPSSIGNLRQLESLDLSQNRLSGEIPTQLANLNFLSVLNLSFNQL 957

Query: 949  VGKIPISTQLQSFLATSFEGNKGLCGPPLNVCRTNSSKALPSSP------ASTDEIDWFF 1002
            VG+IP   Q+Q+F   S+EGNK LCG PL++  T+   +            S  EI W +
Sbjct: 958  VGRIPPGNQMQTFSEASYEGNKELCGWPLDLSCTDPPPSQGKEEFDDRHSGSRMEIKWEY 1017

Query: 1003 IAMAIEFVVGFGSVVAPLMFSRKVNKWYNNLINRI 1037
            IA  I FV G G V+ PL+  R+  K Y   ++RI
Sbjct: 1018 IAPEIGFVTGLGIVIWPLVLCRRWRKCYYKHVDRI 1052

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481300|ref|XP_002269481.2| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score = 1106 bits (2861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 611/1028 (59%), Positives = 752/1028 (73%), Gaps = 20/1028 (1%)

Query: 26   VSGQCQSDQQSLL-------LQMKSSLVFNSSLSFRMVQWSQSNDCCTWSGVDCDEAGRV 78
            VSG+C SD +  L       LQ+KSSL+FN++ S ++V W QS DCC+W GV  D  GRV
Sbjct: 6    VSGECLSDGRVCLEDEVLLLLQLKSSLIFNTAASNKLVSWIQSADCCSWGGVTWDATGRV 65

Query: 79   IGLDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAG 138
            + LDLS E IS  +++SS +FSL+YLQSLNLA N F +++IP+    L NLT LNLSNAG
Sbjct: 66   VSLDLSSEFISGELNSSSSIFSLQYLQSLNLANNTF-SSQIPAEFHKLGNLTYLNLSNAG 124

Query: 139  FAGQIPIQVSGMTRLVTLDLSSLNRF-GAP-LKLENPNLSGLLQNLAELRELYLDGANIS 196
            F+GQIPI++S +T+LVT+DLSSL    G P LKLENPNL  L+QNL +LREL+LDG  IS
Sbjct: 125  FSGQIPIEISYLTKLVTIDLSSLYFITGIPKLKLENPNLRMLVQNLKKLRELHLDGVIIS 184

Query: 197  APGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLA 256
            A G EWC ALSS VP LQVLSL SC+LSGPIH SL KLQSLS IRLD N++ +PVPEFL+
Sbjct: 185  AQGKEWCWALSSSVPNLQVLSLYSCHLSGPIHYSLKKLQSLSRIRLDDNNIAAPVPEFLS 244

Query: 257  DFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSN 316
            +F NLT L+LS   L GTFPEKI QV TL+TLDLS N LLQGSLP+FP+   L TL+LS 
Sbjct: 245  NFSNLTHLQLSSCGLYGTFPEKIFQVPTLQTLDLSYNKLLQGSLPEFPQGGCLETLVLSV 304

Query: 317  TNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHM 376
            T FSG LP+SI NLK L+R++LA C F G IPT +ANLTQLVYLD S NKF G IPS  +
Sbjct: 305  TKFSGKLPNSIANLKRLARIELADCDFSGPIPTVMANLTQLVYLDFSHNKFSGAIPSFSL 364

Query: 377  SKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAE 436
            SKNLT +DLS+N L G ISS+ W    NLV +D  YNSL GS+P  LFSLP LQ+++L  
Sbjct: 365  SKNLTLIDLSHNNLTGQISSSHWVGFVNLVTIDFCYNSLYGSLPMPLFSLPSLQKIKLNN 424

Query: 437  NKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAA 496
            N+F G   EF   SS  +DT+DLSGN LEGPIP+S+FDL++L IL LSSNK NGTV+L+ 
Sbjct: 425  NQFSGPFGEFPATSSHPMDTLDLSGNNLEGPIPVSLFDLQHLNILDLSSNKFNGTVELSQ 484

Query: 497  IQRLHNLAKLELSYNNLTVN-AGSDSSFP--SQVRTLRLASCKLRVIPNLKNQSKLFNLD 553
             Q+L NL  L LSYNNL++N + S+ + P    + TL+LASCKLR +P+L +QS L  LD
Sbjct: 485  FQKLGNLTTLSLSYNNLSINPSRSNPTSPLLPILSTLKLASCKLRTLPDLSSQSMLVILD 544

Query: 554  LSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSP-ITVLDLHSNQLQG 612
            LS NQI G+IPNW+W+IGN  L +LNLSHNLL  LQ P  +S+L P ++ LDLHSNQL+G
Sbjct: 545  LSQNQIPGKIPNWIWKIGNGFLSHLNLSHNLLEGLQEP--LSNLPPFLSTLDLHSNQLRG 602

Query: 613  NIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLV 672
             IP  PP +  VDYSNN FTSSIPDDIG +++ T+FFSLS N+ITG+IP ++C A YL V
Sbjct: 603  PIPT-PPSSTYVDYSNNRFTSSIPDDIGTYMNVTVFFSLSKNNITGIIPASICNAHYLQV 661

Query: 673  LDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGT 732
            LD S N LSGK+P+CLI+  + L VLNLR N   GT+   FPG+C L TLDLNGN L G 
Sbjct: 662  LDFSDNSLSGKIPSCLIENGD-LAVLNLRRNKFKGTIPGEFPGHCLLQTLDLNGNLLEGK 720

Query: 733  VPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPK 792
            +P+SLANC+ L VL+LGNN++ D FP WL+NISSLRVLVLR+N F+G I C  +  +WP 
Sbjct: 721  IPESLANCKALEVLNLGNNRMNDIFPCWLKNISSLRVLVLRANKFHGPIGCPNSNSTWPM 780

Query: 793  LQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTS 852
            LQIVDLA NNF G +P+KC ++W+AMM+ ED+ QS    + F+ L  +  YYQDAVTVTS
Sbjct: 781  LQIVDLAWNNFSGVLPEKCFSNWRAMMAGEDDVQSKSNHLRFKVLAFSQLYYQDAVTVTS 840

Query: 853  KGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQ 912
            KG EMELVK+L++FTSIDFS NNF G IPE+IG LK L+ LNLS N  TG IPS++G L+
Sbjct: 841  KGQEMELVKVLTLFTSIDFSCNNFQGDIPEDIGDLKLLYVLNLSGNGFTGQIPSSLGQLR 900

Query: 913  QLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLVGKIPISTQLQSFLATSFEGNKGL 972
            QLESLDLS+N LSG+IP QL++L FLS LNLS N LVG+IP   QLQ+F   SF GN+GL
Sbjct: 901  QLESLDLSLNKLSGEIPAQLSSLNFLSVLNLSFNGLVGRIPTGNQLQTFSENSFAGNRGL 960

Query: 973  CGPPLNV-CRTNSSKALPS-SPASTDEIDWFFIAMAIEFVVGFGSVVAPLMFSRKVNKWY 1030
            CG PLNV C   +          S   I W +IA  I FV G G V+ PL+  R+  K Y
Sbjct: 961  CGFPLNVSCEDATPPTFDGRHSGSRIAIKWDYIAPEIGFVTGLGIVIWPLVLCRRWRKCY 1020

Query: 1031 NNLINRII 1038
               ++ I+
Sbjct: 1021 YKHVDGIL 1028

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481304|ref|XP_002270356.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score = 1100 bits (2846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 595/1035 (57%), Positives = 747/1035 (72%), Gaps = 20/1035 (1%)

Query: 21   INMVLVSGQCQSDQQSLL-------LQMKSSLVFNSSLSFRMVQWSQSNDCCTWSGVDCD 73
            +++ LVSG+C SD +  L       LQ+KS+L FN+  S ++V W+QS DCC+W GV  D
Sbjct: 1    MHVALVSGECLSDGRVCLEDEMLLLLQLKSTLKFNADASNKLVSWNQSADCCSWGGVTWD 60

Query: 74   EAGRVIGLDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLN 133
              G V+ LDLS E IS G  +SS +FSL+YLQSLNLA N F ++EIPSG   L NLT LN
Sbjct: 61   ATGHVVALDLSSEFISDGFYSSSSIFSLQYLQSLNLANNTFFSSEIPSGFDKLGNLTYLN 120

Query: 134  LSNAGFAGQIPIQVSGMTRLVTLDLSSLNR-FGAPL-KLENPNLSGLLQNLAELRELYLD 191
            LS AGF+GQIPI++S +TRLVT+D+SS N  FG P  KLE PNL  L+QNL ELREL+LD
Sbjct: 121  LSKAGFSGQIPIEISRLTRLVTIDISSFNDLFGTPAPKLEQPNLRMLVQNLKELRELHLD 180

Query: 192  GANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPV 251
            G +ISA G EWCQALSS VP L+VLSLS C+LSGPI  SL KL+SLSV+ L+ N+  +PV
Sbjct: 181  GVDISAQGKEWCQALSSSVPNLRVLSLSRCFLSGPIDSSLVKLRSLSVVHLNYNNFTAPV 240

Query: 252  PEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRT 311
            P+FLA+F NLTSL LS  RL GTFPE I QV  L+ LDLS N LL G+LP+FP+  SLRT
Sbjct: 241  PDFLANFSNLTSLSLSFCRLYGTFPENIFQVPALQILDLSNNQLLWGALPEFPQGGSLRT 300

Query: 312  LMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPI 371
            L+LS+T FSG +PDSIG L+ LS ++LA C F G IP+S+ANLT+L+YLDLS N F G I
Sbjct: 301  LVLSDTKFSGHMPDSIGKLEMLSWIELARCNFSGPIPSSIANLTRLLYLDLSSNGFTGSI 360

Query: 372  PSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQ 431
            PS   SKNLTH++LS N   G I S  WE   NL+ +DL  N L+G +P SLFS P LQ+
Sbjct: 361  PSFRSSKNLTHINLSRNYFTGQIISHHWEGFLNLLNLDLHQNLLHGDLPLSLFSHPSLQK 420

Query: 432  LQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGT 491
            +QL +N+F G + EFS  SS  L+ +DLS N L+G IP+S+FDLR L++L LS N ++GT
Sbjct: 421  IQLNQNQFSGQLNEFSVVSSFVLEVLDLSSNNLQGSIPLSVFDLRALRVLELSFNNVSGT 480

Query: 492  VQLAAIQRLHNLAKLELSYNNLTVNAGS-DSSFPS--QVRTLRLASCKLRVIPNLKNQSK 548
            ++L+  Q L NL  L LS+N L++N  S +SSF       TL+LASC L+  P+L+N SK
Sbjct: 481  LELSKFQELGNLTTLSLSHNKLSINVDSFNSSFSKSPHFTTLKLASCNLKRFPDLRNNSK 540

Query: 549  LFN-LDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSP-ITVLDLH 606
                LDLS NQI GEIP+W+W IGN  L +LNLSHNLL  LQ PF   +L P +  LDLH
Sbjct: 541  FLGYLDLSQNQIQGEIPHWIWMIGNSFLVHLNLSHNLLVDLQEPF--PNLPPYLFTLDLH 598

Query: 607  SNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCR 666
            SN L+G IP PP  +  VDYSNNSF SSIP+DIG+++S+ +FFSLS N+I+G+IPE++C 
Sbjct: 599  SNLLRGRIPTPPQFSSYVDYSNNSFISSIPEDIGSYISYVIFFSLSKNNISGIIPESICN 658

Query: 667  AKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNG 726
            A  + VLDLS N LSG++P+CLI+ +E L VLNLR N  SGT+S  FPGNC LHTLDLNG
Sbjct: 659  ATNVQVLDLSDNALSGEIPSCLIE-NEALAVLNLRRNMFSGTISGNFPGNCILHTLDLNG 717

Query: 727  NQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCREN 786
            N L GT+P+S+ANC+ L VL+LGNN+I D FP WL+N+SSLRVLVLR+N F+G I C  +
Sbjct: 718  NLLEGTIPESVANCKELEVLNLGNNRIDDKFPCWLKNMSSLRVLVLRANRFHGPIGCPNS 777

Query: 787  GDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQD 846
              +WP LQIVDLA NNF G++P K   +WKAMM+ EDE QS    + F+ L+ ++ YYQD
Sbjct: 778  NSTWPMLQIVDLAYNNFSGKLPAKGFLTWKAMMASEDEVQSKLNHIQFKILEFSELYYQD 837

Query: 847  AVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPS 906
            AVTVTSKG EMELVK+L++FTSIDFS N F+G IPEE+G   SL+ LNLS N  TG IPS
Sbjct: 838  AVTVTSKGQEMELVKVLTLFTSIDFSSNKFEGQIPEEMGNFISLYVLNLSGNGFTGQIPS 897

Query: 907  AIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLVGKIPISTQLQSFLATSF 966
            ++G L+QLESLDLS NHLSG+IP +L +LTFLS L+LS N LVG IP   Q Q+F   SF
Sbjct: 898  SMGQLRQLESLDLSRNHLSGKIPTELVSLTFLSVLDLSFNQLVGAIPSGNQFQTFSEASF 957

Query: 967  EGNKGLCGPPLNV-CRTNSSKAL--PSSPASTDEIDWFFIAMAIEFVVGFGSVVAPLMFS 1023
            + NKGLCG PLNV C  ++          AS  EI W +IA  I FV G G V+ PL+F 
Sbjct: 958  QVNKGLCGQPLNVNCEEDTPPPTFDDRHSASRMEIKWEYIAPEIGFVTGLGIVIWPLVFC 1017

Query: 1024 RKVNKWYNNLINRII 1038
            R+  + Y   ++RI+
Sbjct: 1018 RRWRQCYYKRVDRIL 1032

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147806063|emb|CAN76702.1| hypothetical protein VITISV_032508 [Vitis vinifera]

 Score = 1091 bits (2821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 599/1015 (59%), Positives = 732/1015 (72%), Gaps = 20/1015 (1%)

Query: 36   SLLLQMKSSLVFNSSLSFRMVQWSQSNDCCTWSGVDCDEAGRVIGLDLSEESISAGIDNS 95
            SLLLQ+KS+L  N + S ++V W+ S DCC+W GV  D +G V+ LDLS E IS G ++S
Sbjct: 2    SLLLQLKSTLKHNVAASSKLVSWNPSGDCCSWGGVTWDSSGHVVELDLSSELISGGFNSS 61

Query: 96   SPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVT 155
            S LFSL++LQ LNLA N FNA++IPSG G L NL  LNLS+AGF+GQIPI++S +TRLVT
Sbjct: 62   SSLFSLQHLQRLNLANNSFNASQIPSGFGKLGNLIYLNLSSAGFSGQIPIEISRLTRLVT 121

Query: 156  LDLSSLNRFGAP-LKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQ 214
            +D S L   G P LKLENPNL  LLQNL ELREL+L+G NISA G EWCQ LSS VP LQ
Sbjct: 122  IDFSILYFLGLPTLKLENPNLRKLLQNLRELRELHLNGVNISAEGKEWCQXLSSSVPNLQ 181

Query: 215  VLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGT 274
            VLS+ +CYLSGP+  SL KL+SLS IRLD N   +PVPEFLA+F NLT LRLS   L+GT
Sbjct: 182  VLSMPNCYLSGPLDSSLQKLRSLSSIRLDNNXFSAPVPEFLANFLNLTLLRLSSCGLHGT 241

Query: 275  FPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLS 334
            FPEKI QV TL+ LDLS B LLQGSLP FP+N SL TL+LS+T FSG +P SIGNLK L+
Sbjct: 242  FPEKIFQVPTLQXLDLSNBKLLQGSLPKFPQNGSLGTLVLSDTKFSGKVPYSIGNLKXLT 301

Query: 335  RLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAI 394
            R++LA C F G IP S+A+LTQLVYLDLS NKF G IP   +SKNLT ++LS+N L G I
Sbjct: 302  RIELAGCDFSGPIPNSMADLTQLVYLDLSNNKFSGSIPPFSLSKNLTRINLSHNYLTGPI 361

Query: 395  SSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSAL 454
            SS+ W+ L NLV +DLR NSLNGS+P  LFSLP LQ++QL+ NKF G + +FS    S L
Sbjct: 362  SSSHWDGLVNLVTLDLRDNSLNGSLPMLLFSLPSLQKIQLSNNKFSGPLSKFSVVPFSVL 421

Query: 455  DTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLT 514
            +T+D S N LEGPIP+S+FDL  L IL LSSNK NGTV+L++ Q+L NL+ L LSYN L+
Sbjct: 422  ETLDSSSNNLEGPIPVSVFDLHCLNILDLSSNKFNGTVELSSFQKLGNLSTLSLSYNFLS 481

Query: 515  VNAG---SDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIG 571
             NA      S   S + TL+LASCKL  +P+L  QS+L +LDLSDNQI G IPNW+W+IG
Sbjct: 482  TNASVGNPTSPLLSNLTTLKLASCKLXTLPDLSTQSRLTHLDLSDNQIRGSIPNWIWKIG 541

Query: 572  NVSLQYLNLSHNLLSSLQRPFSISDLSP-ITVLDLHSNQLQGNIPYPPPKAVLVDYSNNS 630
            N SL +LNLSHNLL  LQ  F  S+ +P +++LDLHSNQL G IP PP  +  VDYSNNS
Sbjct: 542  NGSLMHLNLSHNLLEDLQETF--SNFTPYLSILDLHSNQLHGQIPTPPQFSKYVDYSNNS 599

Query: 631  FTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIK 690
            F SSIPDDIG ++SFT+FFSL  N+ITG IP ++C A YL VLD S N  SG++P+CLI+
Sbjct: 600  FNSSIPDDIGTYMSFTIFFSLXKNNITGSIPRSICNATYLQVLDFSDNAFSGEIPSCLIQ 659

Query: 691  MSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGN 750
             +E L VLNL  N   GT+       C L TLDL+ N L G +P+SL NC+ L +L+LGN
Sbjct: 660  -NEALAVLNLGRNKFVGTIXGELXHKCLLRTLDLSENLLQGNIPESLVNCKELEILNLGN 718

Query: 751  NKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQK 810
            N+I D FP WL+NISSLRVLVLR+N F+G I C ++  +W  LQI DLA NNF G++P K
Sbjct: 719  NQIDDIFPCWLKNISSLRVLVLRANKFHGTIGCPKSNSTWATLQIFDLAFNNFSGKLPAK 778

Query: 811  CITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSID 870
            C+++W A+M+ E+E QS  K + F   +    YYQD V V SKG EMELVKIL++FTSID
Sbjct: 779  CLSTWTAIMAGENEVQSKLKILQFRVPQFGQLYYQDTVRVISKGQEMELVKILTLFTSID 838

Query: 871  FSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPI 930
            +S NNF+G IPE IG L SL+ LNLS N  TG IPS+IG L+QLESLDLS N LSG+IP 
Sbjct: 839  WSYNNFEGEIPEVIGNLTSLYVLNLSHNGFTGQIPSSIGKLRQLESLDLSQNRLSGEIPT 898

Query: 931  QLANLTFLSFLNLSHNNLVGKIPISTQLQSFLATSFEGNKGLCGPPLNVCRTNSSKALPS 990
            QLANL FLS LNLS N LVG+IP   QLQ+F   SF GN+GLCG P+NV   +   A P 
Sbjct: 899  QLANLNFLSVLNLSFNQLVGRIPPGNQLQTFSPNSFVGNRGLCGFPVNV---SCEDATP- 954

Query: 991  SPASTD-------EIDWFFIAMAIEFVVGFGSVVAPLMFSRKVNKWYNNLINRII 1038
             P S D       EI W  IA  I FV G G V+ PL+  R+  K Y   ++RI+
Sbjct: 955  -PTSDDGHSGSGMEIKWECIAPEIGFVTGLGIVIWPLVLCRRWRKCYYKHVDRIL 1008

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579302|ref|XP_002530496.1| serine/threonine-protein kinase bri1, putative [Ricinus communis] gi|223529953|gb|EEF31880.1| serine/threonine-protein kinase bri1, putative [Ricinus communis]

 Score = 1088 bits (2813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 586/1045 (56%), Positives = 753/1045 (72%), Gaps = 16/1045 (1%)

Query: 4    LQLSWLFLLTMLTNFGGINMVLVSGQCQSDQQSLLLQMKSSLVFNSSLSFRMVQWSQSND 63
            +++   F+  +L    GI++V+VSG C+ DQQSLL++  SSL FN + S ++V W+ S+D
Sbjct: 1    MKIHLFFIWFLLAGLFGIHVVMVSGSCRIDQQSLLVRFHSSLRFNQAKSIKLVSWNLSSD 60

Query: 64   CCTWSGVDCDEAG--RVIGLDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPS 121
            CC W+GV CD  G  RVIGL+LS ESIS GI+N S LF L+YL++L+L++N FN T IP+
Sbjct: 61   CCDWAGVTCDGGGLGRVIGLNLSSESISGGIENPSALFRLRYLRNLDLSYNNFN-TSIPA 119

Query: 122  GLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNRFGA--PLKLENPNLSGLL 179
               SLT L +LNLSNAG+AGQIPI++S +T+LVTLDLS    F A   L+LENPNL+ L+
Sbjct: 120  SFASLTCLISLNLSNAGYAGQIPIEISYLTKLVTLDLSISPFFSAKSALRLENPNLAKLV 179

Query: 180  QNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSV 239
            QNL  L EL+LDG NISA G EWC  LSS +P L+VLSLS C+LSGP   SLA LQSLSV
Sbjct: 180  QNLTHLTELHLDGVNISASGKEWCGPLSSSLPSLRVLSLSRCFLSGPFDSSLAALQSLSV 239

Query: 240  IRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGS 299
            IRLD N   SPVPEF A F NL +L LS  +L GTFP K+  V TLE +DLS N  LQG 
Sbjct: 240  IRLDGNSFSSPVPEFFASFLNLRTLSLSSCKLQGTFPTKVFHVSTLEIIDLSFNKELQGY 299

Query: 300  LPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVY 359
            LPD  +N+SL+TL L+N  FSG LPD IG L NL+R++LA C F G IPTS+ NLT+LVY
Sbjct: 300  LPDSFQNASLKTLKLNNIKFSGSLPDPIGALGNLTRINLATCTFTGPIPTSMENLTELVY 359

Query: 360  LDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSI 419
            LD S N F G IPSL  SK L ++D S N L G IS+ DW+ LSNLV++DL+ NS NGSI
Sbjct: 360  LDFSSNTFTGSIPSLDGSKKLMYVDFSNNYLSGVISNIDWKGLSNLVHIDLKNNSFNGSI 419

Query: 420  PGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLK 479
            P SLF++  LQ++ L+ N+FGG IPEF NAS+ +LDT+DLS N LEGP+P S+F+LR L 
Sbjct: 420  PLSLFAIQSLQKIMLSYNQFGGQIPEFPNASTLSLDTLDLSNNNLEGPVPHSVFELRRLN 479

Query: 480  ILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVN---AGSDSSFPSQVRTLRLASCK 536
            +L L+SNK +GT++L  IQ+L NL  ++LSYN LTV+     S SSFP ++ TL+LASC 
Sbjct: 480  VLSLASNKFSGTIKLDQIQKLVNLTTVDLSYNKLTVDVNATNSTSSFPLRLTTLKLASCN 539

Query: 537  LRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISD 596
            LR+ P+L+NQS++ NLDL+DN+I+G +P W+ ++GN SL  LNLS NLL SL  P S+S+
Sbjct: 540  LRMFPDLRNQSRITNLDLADNKIAGSVPPWIGQVGNGSLLNLNLSRNLLVSLPEPLSLSN 599

Query: 597  LSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSI 656
               + VLDLHSNQLQGNIP PPP   +VD SNN+F+SSIP +IG+ +S  +FFSLSNN +
Sbjct: 600  --TLAVLDLHSNQLQGNIPSPPPLVSVVDLSNNNFSSSIPYNIGDNLSVAIFFSLSNNRV 657

Query: 657  TGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGN 716
             GVIPE+LC A YL VLDLS N L G +P+CLI+ SE LGVLNLR N+ +G +   F   
Sbjct: 658  EGVIPESLCTASYLEVLDLSNNSLIGSIPSCLIERSETLGVLNLRKNNFTGRIPDNFSRK 717

Query: 717  CGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNS 776
            C L TLDL+GN L G VP+SL NC  L VLDLG+NKI DTFP  L NISSLRVLVLR+N+
Sbjct: 718  CKLETLDLSGNLLEGKVPESLINCTILEVLDLGSNKINDTFPCLLRNISSLRVLVLRNNN 777

Query: 777  FYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEF 836
            FYGN+SC  +  +W +LQIVD+A N+F GR+P + ++ WKAM+   +E     K   F+F
Sbjct: 778  FYGNLSCPSSNATWARLQIVDIALNSFTGRLPNRMLSKWKAMIGAGNETHGPIK---FKF 834

Query: 837  LKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLS 896
            LK+   YYQD++TVTSKGLEM+LVKIL++FTSID S N F G IPE +G+  +L+ LNLS
Sbjct: 835  LKVGGLYYQDSITVTSKGLEMQLVKILTLFTSIDVSCNKFQGQIPERLGQFSALYILNLS 894

Query: 897  QNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLVGKIPIST 956
             NAL G IP ++GN+  LESLDLS NHL+G+IP QL +LTFLSFLNLS N LVG IP   
Sbjct: 895  HNALDGQIPPSLGNVSNLESLDLSNNHLTGEIPRQLTDLTFLSFLNLSGNELVGDIPTGR 954

Query: 957  QLQSFLATSFEGNKGLCGPPLNVCRTNSSKALPSSP---ASTDEIDWFFIAMAIEFVVGF 1013
            Q Q+F  TS+ GN+GLCGPPL+   +N+  + P +         I+W  ++    ++ G 
Sbjct: 955  QFQTFENTSYRGNEGLCGPPLSKLCSNNIASAPETDHIHKRVRGINWKLLSAEFGYLFGL 1014

Query: 1014 GSVVAPLMFSRKVNKWYNNLINRII 1038
            G  V PL+  ++   WY   ++R++
Sbjct: 1015 GIFVMPLILWQRWRSWYYKHVDRVL 1039

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|214011438|gb|ACJ61469.1| GbVe [Gossypium barbadense]

 Score = 1081 bits (2796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 587/1047 (56%), Positives = 741/1047 (70%), Gaps = 18/1047 (1%)

Query: 1    MSVLQLSWLFLLTML-TNFGGINMVLVSGQCQSDQQSLLLQMKSSLVFNSSLSFRMVQWS 59
            M +   SW+F    L   F  I++VLVSGQCQ DQ  LLL++KSS  FNS+   ++ +W+
Sbjct: 1    MMISPFSWIFFNAFLVAAFFTIHLVLVSGQCQRDQGQLLLELKSS--FNSTSLGKLQKWN 58

Query: 60   QSNDCCTWSGVDCDEAGRVIGLDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEI 119
            Q+ DCC W GV CD +GRVIGLDLS +SIS  ID+SS LF  ++LQ LNLA+N   AT  
Sbjct: 59   QTTDCCFWDGVTCDASGRVIGLDLSNQSISGAIDDSSGLFRFQHLQQLNLAYNRLMAT-F 117

Query: 120  PSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLL 179
            P+G   L NL+ LNLSNAGF GQIP  +S MTRLVTLDLS  +  G  L LE P L  L+
Sbjct: 118  PTGFDKLENLSYLNLSNAGFTGQIPAVISRMTRLVTLDLSVSSLLGRSLTLEKPKLEMLV 177

Query: 180  QNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSV 239
            QNL +L+ L+LDG NI A G EWC+ALSSL   LQVLS+S+C LSGPI  S++KL+SLSV
Sbjct: 178  QNLTKLKFLHLDGVNIRATGNEWCRALSSLT-DLQVLSMSNCNLSGPIDSSISKLRSLSV 236

Query: 240  IRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGS 299
            IRLD N+L + VPEF A+F NLTSL LS S L G  P ++L++ TL+ LDLS N LL+GS
Sbjct: 237  IRLDNNNLSTSVPEFFAEFPNLTSLHLSTSGLRGGLPAEVLKIPTLQILDLSNNELLEGS 296

Query: 300  LPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVY 359
              +FP N SL+TL LS T F G +PDSIGNL  L+R++LA C F G IP ++  LTQLVY
Sbjct: 297  FQEFPSNGSLQTLTLSGTKFGGQVPDSIGNLGQLTRIELASCNFSGPIPKAVKKLTQLVY 356

Query: 360  LDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSI 419
            LD S N F GPIPS   S+NLT L+L+YN L G I STDW  LSNLV +DLR N L+G+I
Sbjct: 357  LDFSSNSFSGPIPSFSSSRNLTQLNLAYNRLNGTIHSTDWSVLSNLVSIDLRNNKLSGTI 416

Query: 420  PGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLK 479
            P +LF +P LQ++ L++N+F G + +    ++  LDT+DLS N L+G  PM +F+L+ LK
Sbjct: 417  PPTLFGIPSLQKISLSQNRFNGSLGDLRGKTTLLLDTLDLSSNMLQGQFPMFVFELQGLK 476

Query: 480  ILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSD----SSFPSQVRTLRLASC 535
            IL +SSNK +G +Q   IQ+L NL+ L+LSYNNL+++A S     S+FP+ + TL+LASC
Sbjct: 477  ILTISSNKFSGFIQWTDIQKLRNLSNLDLSYNNLSIDATSTNSALSTFPN-ITTLKLASC 535

Query: 536  KLRVIPN-LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSI 594
             L+  P  LK Q KL +LDLS NQ+SGEIPNWVWEI N  L YLNLS N L   + PF +
Sbjct: 536  NLKKFPGFLKTQVKLNHLDLSKNQMSGEIPNWVWEIKN--LAYLNLSQNSLMKFEGPF-L 592

Query: 595  SDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNN 654
            S  S +TV+DLH NQLQG I   P  A  +DYS N+F+S +P DIG+F+ F  FFS+S+N
Sbjct: 593  SITSTLTVVDLHGNQLQGQIDRLPQYATYLDYSRNNFSSVLPRDIGDFLQFAYFFSISDN 652

Query: 655  SITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFP 714
            +  G IPE++C++ YL VLDLS N LSG +P CLI+MS  LGVLNLR N+L+G +S TFP
Sbjct: 653  NFHGSIPESICKSSYLQVLDLSNNSLSGSIPECLIQMSVSLGVLNLRRNNLTGNISDTFP 712

Query: 715  GNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRS 774
             NC L TL LN N L G VPKSL +C+ L VLDLGNN+I DTFP  L+NISSLRVLVLR 
Sbjct: 713  ENCLLQTLVLNRNLLRGKVPKSLVSCKMLEVLDLGNNQINDTFPCHLKNISSLRVLVLRG 772

Query: 775  NSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHF 834
            N F GN+ C E    WP LQIVDL+SN+F GR+ + C+++WKAM + E E  S    + F
Sbjct: 773  NKFNGNVHCSERS-PWPMLQIVDLSSNSFSGRLHEACLSTWKAMRAAESETLSELNHLQF 831

Query: 835  EFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLN 894
            + LK+  FYYQDA+TVT KGLE+EL+KIL++FTSID SRNNF+GPIPE IG  K+L+ LN
Sbjct: 832  KVLKLNQFYYQDAITVTMKGLELELLKILTVFTSIDISRNNFEGPIPEVIGTFKALYVLN 891

Query: 895  LSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLVGKIPI 954
             S NA TG IP ++GNL QLESLDLS N   G+IPIQLANL F+SFLN+S+N L G+IP 
Sbjct: 892  FSHNAFTGSIPPSLGNLSQLESLDLSSNSFDGEIPIQLANLNFISFLNVSNNKLEGQIPR 951

Query: 955  STQLQSFLATSFEGNKGLCGPPLNVCRTNSSKALPSSPAS---TDEIDWFFIAMAIEFVV 1011
            STQ+QSF   SFE NKGLCG PL     N +   P +       DE DW FI + + F V
Sbjct: 952  STQIQSFSEASFENNKGLCGLPLTTDCVNGTSPKPRTTQEFQPADEFDWQFIFIGVGFGV 1011

Query: 1012 GFGSVVAPLMFSRKVNKWYNNLINRII 1038
            G    VAPL+F +  +KW + ++++I+
Sbjct: 1012 GAALFVAPLIFWKTASKWVDEIVDKIL 1038

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481293|ref|XP_003632602.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score = 1078 bits (2788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 608/1048 (58%), Positives = 749/1048 (71%), Gaps = 27/1048 (2%)

Query: 7    SWLFLLTMLTNFGGINMVLVSGQCQ-------SDQQSLLLQMKSSLVFNSSLSFRMVQWS 59
            S+LFL         I++ LVSG+C         D++S+LLQ+K+SL F S++S ++V W+
Sbjct: 66   SFLFLFR-------IHIALVSGECLGGSRLCLEDEKSMLLQLKNSLKFKSNVSMKLVTWN 118

Query: 60   QSNDCCTWSGVDCDEAGRVIGLDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEI 119
            +S  CC+W GV  D  G V+GLDLS E IS G ++SS LFSL++LQ LNLA N FN+++I
Sbjct: 119  ESVGCCSWEGVTWDSNGHVVGLDLSSELISGGFNSSSSLFSLRHLQRLNLANNSFNSSQI 178

Query: 120  PSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNRFGAP-LKLENPNLSGL 178
            PSG   L NLT LNLS  GF GQIPI++S +TRLVT+D S L   G P LKLENPNL  L
Sbjct: 179  PSGFDKLGNLTYLNLSATGFYGQIPIEISRLTRLVTIDFSILYFPGVPTLKLENPNLRML 238

Query: 179  LQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLS 238
            +QNLAELRELYL+G NISA G EWC+ALSS VP LQVLSL SCYLSGP+  SL KL+SLS
Sbjct: 239  VQNLAELRELYLNGVNISAQGKEWCRALSSSVPNLQVLSLPSCYLSGPLDSSLQKLRSLS 298

Query: 239  VIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQG 298
             IRLD N+  +PVPEFLA+F NLT LRLS   L GTFPEKI QV TL+ LDLS N LL G
Sbjct: 299  SIRLDSNNFSAPVPEFLANFSNLTQLRLSSCGLYGTFPEKIFQVPTLQILDLSNNKLLLG 358

Query: 299  SLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLV 358
            SLP+FP+N SL TL+L +T FSG +P+SIGNLK L+R++LA C F G IP S ANL +LV
Sbjct: 359  SLPEFPQNGSLETLVLPDTKFSGKVPNSIGNLKRLTRIELARCNFSGPIPNSTANLARLV 418

Query: 359  YLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGS 418
            YLDLS NKF GPIP   +SKNLT ++LS+N L G I S+  + L NLV +DL  NSLNGS
Sbjct: 419  YLDLSENKFSGPIPPFSLSKNLTRINLSHNHLTGPIPSSHLDGLVNLVTLDLSKNSLNGS 478

Query: 419  IPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNL 478
            +P  LFSLP LQ++QL+ N+F G + +FS    S LDT+DLS N LEG IP+SIFDL+ L
Sbjct: 479  LPMPLFSLPSLQKIQLSNNQFSGPLSKFS-VVPSVLDTLDLSSNNLEGQIPVSIFDLQCL 537

Query: 479  KILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAG---SDSSFPSQVRTLRLASC 535
             IL LSSNK NGTV L++ Q+L NL  L LSYNNL++N+            + TL+LASC
Sbjct: 538  SILDLSSNKFNGTVLLSSFQKLGNLTTLSLSYNNLSINSSVGNPTLPLLLNLTTLKLASC 597

Query: 536  KLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSIS 595
            KLR +P+L  QS+L  LDLSDNQI G IPNW+ +IGN SL +LNLSHNLL  LQ  F  S
Sbjct: 598  KLRTLPDLSTQSRLTYLDLSDNQIPGSIPNWIRKIGNGSLLHLNLSHNLLEDLQETF--S 655

Query: 596  DLSP-ITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNN 654
            + +P +++LDLHSNQL G IP PP     VDYS+N FTSSIPD IG ++SFT+FFSLS N
Sbjct: 656  NFTPSLSILDLHSNQLHGQIPTPPQFCSYVDYSDNRFTSSIPDGIGVYISFTIFFSLSKN 715

Query: 655  SITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFP 714
            +ITG IP ++C A YL VLD S N LSGK+P+CLI+    LGVLNLR N+ SG +   FP
Sbjct: 716  NITGSIPRSICNATYLQVLDFSNNNLSGKIPSCLIEYG-TLGVLNLRRNNFSGAIPGKFP 774

Query: 715  GNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRS 774
             NC L TLDL+ N + G +P SLANC  L VL+LGNN++  TFP  L+NI++LRVLVLR 
Sbjct: 775  VNCLLQTLDLSRNHIEGKIPGSLANCTALEVLNLGNNQMNGTFPCLLKNITTLRVLVLRG 834

Query: 775  NSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHF 834
            N+F G+I CR++  +W  LQIVDLA NNF G++P  C ++W AMM+ E+E QS  K + F
Sbjct: 835  NNFQGSIGCRKSNSTWAMLQIVDLAFNNFSGKLPATCFSTWTAMMAGENEVQSKLKHLQF 894

Query: 835  EFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLN 894
              L+ +  YYQDAVTVTSKGLEMELVK+L+++TSID S NNF G IPE +G   SL+ LN
Sbjct: 895  RVLQFSQLYYQDAVTVTSKGLEMELVKVLTLYTSIDLSCNNFQGDIPEVMGNFTSLYVLN 954

Query: 895  LSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLVGKIPI 954
            LS N  TG IPS+IGNL+QLESLDLS N LSG+IP QLANL FLS LNLS N LVG+IP 
Sbjct: 955  LSHNGFTGHIPSSIGNLRQLESLDLSRNRLSGEIPTQLANLNFLSVLNLSFNQLVGRIPP 1014

Query: 955  STQLQSFLATSFEGNKGLCGPPLNVCR----TNSSKALPSSPASTDEIDWFFIAMAIEFV 1010
              Q+Q+F  TS+EGNK LCG PL  C     T   +         +E DW FI   + F 
Sbjct: 1015 GNQMQTFSETSYEGNKELCGWPLINCTDPPPTQDKRFQDKRFQDKEEFDWEFIITGLGFG 1074

Query: 1011 VGFGSVVAPLMFSRKVNKWYNNLINRII 1038
            VG G +VAPL+F +K  KW +  ++R +
Sbjct: 1075 VGAGIIVAPLIFWKKGRKWLDECVDRFV 1102

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350535939|ref|NP_001234733.1| verticillium wilt disease resistance protein Ve2 precursor [Solanum lycopersicum] gi|14269077|gb|AAK58011.1|AF365929_1 verticillium wilt disease resistance protein Ve2 [Solanum lycopersicum] gi|14269079|gb|AAK58012.1|AF365930_1 verticillium wilt disease resistance protein Ve2 [Solanum lycopersicum]

 Score = 1061 bits (2743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 569/1049 (54%), Positives = 744/1049 (70%), Gaps = 10/1049 (0%)

Query: 1    MSVLQLSWLF-LLTMLTNFGGINMVLVSGQCQSDQQSLLLQMKSSLVFNSSLSFRMVQWS 59
            M  L   W+F ++  L    G  ++LVS QC  DQ+SLLLQ+K S  ++S+LS ++ +W+
Sbjct: 1    MRFLHFLWIFFIIPFLQILLGNEILLVSSQCLDDQKSLLLQLKGSFQYDSTLSNKLARWN 60

Query: 60   Q-SNDCCTWSGVDCDEAGRVIGLDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATE 118
              +++CC W+GV CD +G VI L+L +E IS+GI+N+S LFSL+YL+ LNLA+N FN   
Sbjct: 61   HNTSECCNWNGVTCDLSGHVIALELDDEKISSGIENASALFSLQYLERLNLAYNKFNVG- 119

Query: 119  IPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSL-NRFGAPLKLENPNLSG 177
            IP G+G+LTNLT LNLSNAGF GQIP+ +S +TRLVTLDLS+L   F  PLKLENPNLS 
Sbjct: 120  IPVGIGNLTNLTYLNLSNAGFVGQIPMMLSRLTRLVTLDLSTLFPDFAQPLKLENPNLSH 179

Query: 178  LLQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSL 237
             ++N  ELRELYLDG ++SA   EWCQ+LSS +P L VLSL +C +SGPI  SL+KL  L
Sbjct: 180  FIENSTELRELYLDGVDLSAQRTEWCQSLSSYLPNLTVLSLRTCRISGPIDESLSKLHFL 239

Query: 238  SVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQ 297
            S IRLDQN+L + VPE+ A+F NLT+L LS   L GTFP++I QV  LE LDLS N LL 
Sbjct: 240  SFIRLDQNNLSTTVPEYFANFSNLTTLTLSSCNLQGTFPKRIFQVPVLEFLDLSTNKLLS 299

Query: 298  GSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQL 357
            GS+P FP+  SLRT+ LS T FSG LPD+I NL+NLSRL+L+ C F   IP+++ANLT L
Sbjct: 300  GSIPIFPQIGSLRTISLSYTKFSGSLPDTISNLQNLSRLELSNCNFSEPIPSTMANLTNL 359

Query: 358  VYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNG 417
            VYLD SFN F G +P    +K L +LDLS N L G +S   +E LS LVY++L  NSLNG
Sbjct: 360  VYLDFSFNNFTGSLPYFQGAKKLIYLDLSRNGLTGLLSRAHFEGLSELVYINLGNNSLNG 419

Query: 418  SIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRN 477
            S+P  +F LP L+QL L  N+F G + EF NASSS LDT+DL  N L G IP S+F++  
Sbjct: 420  SLPAYIFELPSLKQLFLYSNQFVGQVDEFRNASSSPLDTVDLRNNHLNGSIPKSMFEVGR 479

Query: 478  LKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPS---QVRTLRLAS 534
            LK+L LSSN   GTV L  I RL NL++LELSYNNLTV+A S +S      Q+  L+LAS
Sbjct: 480  LKVLSLSSNFFRGTVPLDLIGRLSNLSRLELSYNNLTVDASSSNSTSFTFPQLNILKLAS 539

Query: 535  CKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSI 594
            C+L+  P+LKNQS++ +LDLSDNQI G IPNW+W IG   L +LNLS N L  +++P+++
Sbjct: 540  CRLQKFPDLKNQSRMMHLDLSDNQILGAIPNWIWGIGGGGLAHLNLSFNQLEYVEQPYTV 599

Query: 595  SDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNN 654
            S  S + VLDLHSN+L+G++  PP  A+ VDYS+N+  +SIP DIG  + F  FFS++NN
Sbjct: 600  S--SNLVVLDLHSNRLKGDLLIPPSTAIYVDYSSNNLNNSIPTDIGRSLGFASFFSVANN 657

Query: 655  SITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFP 714
            SITG+IPE++C   YL VLD S N LSG +P CL++ S  LGVLNL  N L G +  +FP
Sbjct: 658  SITGIIPESICNVSYLQVLDFSNNALSGTIPPCLLEYSPKLGVLNLGNNRLHGVIPDSFP 717

Query: 715  GNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRS 774
              C L TLDL+ N   G +PKSL NC  L VL++GNN + D FP  L N +SL+VLVLRS
Sbjct: 718  IGCALITLDLSRNIFEGKLPKSLVNCTLLEVLNVGNNSLVDRFPCMLRNSTSLKVLVLRS 777

Query: 775  NSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHF 834
            N F GN++C     SW  LQI+D+ASNNF G +  +C T+W+ MM  +D  ++    + +
Sbjct: 778  NKFNGNLTCNITKHSWKNLQIIDIASNNFTGMLNAECFTNWRGMMVAKDYVETGRNHIQY 837

Query: 835  EFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLN 894
            EFL++++ YYQD VT+  KG+E+ELVKIL +FTSIDFS N F G IP+ +G L SL+ LN
Sbjct: 838  EFLQLSNLYYQDTVTLIIKGMELELVKILRVFTSIDFSSNRFQGKIPDTVGDLSSLYVLN 897

Query: 895  LSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLVGKIPI 954
            LS NAL GPIP +IG LQ LESLDLS NHLSG+IP +L++LTFL+ LNLS NNL GKIP 
Sbjct: 898  LSHNALEGPIPKSIGKLQMLESLDLSRNHLSGEIPSELSSLTFLAVLNLSFNNLFGKIPQ 957

Query: 955  STQLQSFLATSFEGNKGLCGPPLNV-CRTNSSKALPSSPASTDEIDWFFIAMAIEFVVGF 1013
            S Q ++F A SFEGN+GLCG PLNV C++++S+  P+  +  D  DW FI   + + VG 
Sbjct: 958  SNQFETFSAESFEGNRGLCGLPLNVICKSDTSELKPAPSSQDDSYDWQFIFTGVGYGVGA 1017

Query: 1014 GSVVAPLMFSRKVNKWYNNLINRIINCRF 1042
               +APL+F ++ NK+++  + R++   F
Sbjct: 1018 AISIAPLLFYKQGNKYFDKHLERMLKLMF 1046

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1044
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-60
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-57
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-17
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-08
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	1e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
PLN03210	1153	PLN03210, PLN03210, Resistant to P	5e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-05
PLN03210	1153	PLN03210, PLN03210, Resistant to P	3e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	8e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.001
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  223 bits (569), Expect = 4e-60
 Identities = 208/701 (29%), Positives = 308/701 (43%), Gaps = 154/701 (21%)

Query: 353  NLTQLVYLDLSFNKFVGPI-PSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLR 411
            N +++V +DLS     G I  ++     +  ++LS N L G I    +   S+L Y++L 
Sbjct: 67   NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 412  YNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMS 471
             N+  GSIP    S+P L+ L L+ N   G IP     S S+L  +DL GN L G IP S
Sbjct: 127  NNNFTGSIPRG--SIPNLETLDLSNNMLSGEIPN-DIGSFSSLKVLDLGGNVLVGKIPNS 183

Query: 472  IFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLR 531
            + +L +L+ L L+SN+L G +    + ++ +L  + L YNNL                  
Sbjct: 184  LTNLTSLEFLTLASNQLVGQIP-RELGQMKSLKWIYLGYNNL------------------ 224

Query: 532  LASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNV-SLQYLNLSHNLLSSLQR 590
                                        SGEIP    EIG + SL +L+L +N L+    
Sbjct: 225  ----------------------------SGEIPY---EIGGLTSLNHLDLVYNNLTG-PI 252

Query: 591  PFSISDLSPITVLDLHSNQLQGNIP---YPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTL 647
            P S+ +L  +  L L+ N+L G IP   +   K + +D S+NS +  IP+ +    +  +
Sbjct: 253  PSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEI 312

Query: 648  FFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSG 707
                SNN  TG IP  L     L VL L  NK SG++P  L K +  L VL+L  N+L+G
Sbjct: 313  LHLFSNN-FTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNN-LTVLDLSTNNLTG 370

Query: 708  TLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSL 767
             +      +  L  L L  N L G +PKSL  CR+L  + L +N      P     +  +
Sbjct: 371  EIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLV 430

Query: 768  RVLVLRSNSFYGNISCRENGDSW--PKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEA 825
              L + +N+  G I+ R+    W  P LQ++ LA N F G +P                 
Sbjct: 431  YFLDISNNNLQGRINSRK----WDMPSLQMLSLARNKFFGGLPD---------------- 470

Query: 826  QSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIG 885
                                   +  SK LE           ++D SRN F G +P ++G
Sbjct: 471  -----------------------SFGSKRLE-----------NLDLSRNQFSGAVPRKLG 496

Query: 886  RLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSH 945
             L  L  L LS+N L+G IP  + + ++L SLDLS N LSGQIP   + +  LS L+LS 
Sbjct: 497  SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQ 556

Query: 946  NNLVGKIP-----ISTQLQ----------------SFLA---TSFEGNKGLCGPPLNVCR 981
            N L G+IP     + + +Q                +FLA   ++  GN  LCG       
Sbjct: 557  NQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCG------- 609

Query: 982  TNSSKALPSSPASTDEIDWFFI------AMAIEFVVGFGSV 1016
             +++  LP          W+F       A  +  +V FG V
Sbjct: 610  GDTTSGLPPCKRVRKTPSWWFYITCTLGAFLVLALVAFGFV 650

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  213 bits (543), Expect = 8e-57
 Identities = 219/769 (28%), Positives = 329/769 (42%), Gaps = 175/769 (22%)

Query: 23  MVLVSGQCQSDQQSLLLQMKSSLVFNSSLSFRMVQWSQSNDCCTWSGVDCDEAGRVIGLD 82
           + L      +++  LLL  KSS+  N  L + +  W+ S D C W G+ C+ + RV+ +D
Sbjct: 19  LFLNFSMLHAEELELLLSFKSSI--NDPLKY-LSNWNSSADVCLWQGITCNNSSRVVSID 75

Query: 83  LSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLT-NLTNLNLSNAGFAG 141
           LS ++IS  I  SS +F L Y+Q++NL+ N  +   IP  + + + +L  LNLSN  F G
Sbjct: 76  LSGKNISGKI--SSAIFRLPYIQTINLSNNQLSG-PIPDDIFTTSSSLRYLNLSNNNFTG 132

Query: 142 QIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIE 201
            IP     +  L TLDLS            N  LSG         E+  D  + S     
Sbjct: 133 SIP--RGSIPNLETLDLS------------NNMLSG---------EIPNDIGSFS----- 164

Query: 202 WCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNL 261
                      L+VL L    L G I  SL  L SL  + L  N L+  +P  L    +L
Sbjct: 165 ----------SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL 214

Query: 262 TSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSG 321
             + L ++ L+G  P +I  + +L  LDL  N+L            +L+ L L     SG
Sbjct: 215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG 274

Query: 322 VLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLT 381
            +P SI +L+                         L+ LDLS N   G IP L +     
Sbjct: 275 PIPPSIFSLQK------------------------LISLDLSDNSLSGEIPELVI----- 305

Query: 382 HLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGG 441
                               L NL  + L  N+  G IP +L SLP LQ LQL  NKF G
Sbjct: 306 -------------------QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSG 346

Query: 442 LIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLH 501
            IP+ +    + L  +DLS N L G IP  +    NL  LIL SN L G +   ++    
Sbjct: 347 EIPK-NLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP-KSLGACR 404

Query: 502 NLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISG 561
           +L ++ L  N+ +         PS+   L L                ++ LD+S+N + G
Sbjct: 405 SLRRVRLQDNSFS------GELPSEFTKLPL----------------VYFLDISNNNLQG 442

Query: 562 EIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKA 621
            I +  W++   SLQ L+L+ N          + D          S +L+          
Sbjct: 443 RINSRKWDM--PSLQMLSLARNKFFG-----GLPDSF-------GSKRLEN--------- 479

Query: 622 VLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLS 681
             +D S N F+ ++P  +G+  S  +   LS N ++G IP+ L   K L+ LDLS N+LS
Sbjct: 480 --LDLSRNQFSGAVPRKLGSL-SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS 536

Query: 682 GKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCR 741
           G++P    +M  +L                          LDL+ NQL G +PK+L N  
Sbjct: 537 GQIPASFSEM-PVLS------------------------QLDLSQNQLSGEIPKNLGNVE 571

Query: 742 NLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNIS-CRENGDS 789
           +LV +++ +N +  + P      S+   L + +++  GNI  C  +  S
Sbjct: 572 SLVQVNISHNHLHGSLP------STGAFLAINASAVAGNIDLCGGDTTS 614

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 84.9 bits (210), Expect = 8e-17
 Identities = 51/140 (36%), Positives = 73/140 (52%), Gaps = 10/140 (7%)

Query: 878  GPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTF 937
            G IP +I +L+ L  +NLS N++ G IP ++G++  LE LDLS N  +G IP  L  LT 
Sbjct: 432  GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 938  LSFLNLSHNNLVGKIPISTQLQSFLATSFE--GNKGLCG-PPLNVCRTNSSKALPSSPAS 994
            L  LNL+ N+L G++P +   +     SF    N GLCG P L  C  + S       A 
Sbjct: 492  LRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGPHLSVGAKIGIA- 550

Query: 995  TDEIDWFFIAMAIEFVVGFG 1014
                  F +++A  F+V   
Sbjct: 551  ------FGVSVAFLFLVICA 564

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.5 bits (152), Expect = 7e-10
 Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 892 GLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLVGK 951
           GL L    L G IP+ I  L+ L+S++LS N + G IP  L ++T L  L+LS+N+  G 
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 952 IPIST-QLQSFLATSFEGN 969
           IP S  QL S    +  GN
Sbjct: 482 IPESLGQLTSLRILNLNGN 500

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.6 bits (147), Expect = 3e-09
 Identities = 42/111 (37%), Positives = 56/111 (50%), Gaps = 6/111 (5%)

Query: 408 VDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGP 467
           + L    L G IP  +  L  LQ + L+ N   G IP  S  S ++L+ +DLS N   G 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIP-PSLGSITSLEVLDLSYNSFNGS 481

Query: 468 IPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAG 518
           IP S+  L +L+IL L+ N L+G V  A   RL + A       N T NAG
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF-----NFTDNAG 527

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.2 bits (146), Expect = 4e-09
 Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 293 NSLLQGSLP-DFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSL 351
           N  L+G +P D  K   L+++ LS  +  G +P S+G++ +L  LDL+   F+GSIP SL
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486

Query: 352 ANLTQLVYLDLSFNKFVGPIPS 373
             LT L  L+L+ N   G +P+
Sbjct: 487 GQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.1 bits (138), Expect = 3e-08
 Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 2/86 (2%)

Query: 624 VDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGK 683
           +   N      IP+DI          +LS NSI G IP +L     L VLDLS N  +G 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSI-NLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 684 MPTCLIKMSEILGVLNLRGNSLSGTL 709
           +P  L +++  L +LNL GNSLSG +
Sbjct: 482 IPESLGQLTS-LRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.1 bits (138), Expect = 4e-08
 Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 1/82 (1%)

Query: 312 LMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPI 371
           L L N    G +P+ I  L++L  ++L+     G+IP SL ++T L  LDLS+N F G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 372 P-SLHMSKNLTHLDLSYNALPG 392
           P SL    +L  L+L+ N+L G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.7 bits (137), Expect = 5e-08
 Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 2/90 (2%)

Query: 383 LDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGL 442
           L L    L G I + D   L +L  ++L  NS+ G+IP SL S+  L+ L L+ N F G 
Sbjct: 423 LGLDNQGLRGFIPN-DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 443 IPEFSNASSSALDTIDLSGNRLEGPIPMSI 472
           IPE S    ++L  ++L+GN L G +P ++
Sbjct: 482 IPE-SLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 55.7 bits (134), Expect = 6e-08
 Identities = 96/347 (27%), Positives = 143/347 (41%), Gaps = 42/347 (12%)

Query: 269 SRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIG 328
             +N  FP+  L+   +  L L+ +S     LP          L+  +   S    +++ 
Sbjct: 31  QSINLNFPDSNLESVAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLL 90

Query: 329 NLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSL--HMSKNLTHLDLS 386
           NL  L  LDL L     +I + L  LT L  LDL  N  +  IP L   +  NL  LDLS
Sbjct: 91  NLLPLPSLDLNLNRLRSNI-SELLELTNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLS 148

Query: 387 YNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEF 446
            N +      +   +L NL  +DL +N L+  +P  L +L  L  L L+ NK   L PE 
Sbjct: 149 DNKI--ESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPE- 204

Query: 447 SNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKL 506
                SAL+ +DLS N +   +  S+ +L+NL  L LS+NKL    +   I  L NL  L
Sbjct: 205 -IELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPES--IGNLSNLETL 260

Query: 507 ELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNW 566
           +LS N ++                         I +L + + L  LDLS N +S  +P  
Sbjct: 261 DLSNNQISS------------------------ISSLGSLTNLRELDLSGNSLSNALPL- 295

Query: 567 VWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGN 613
                   L  L      L    +   +   S +   ++ SN    +
Sbjct: 296 -----IALLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGETSS 337

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 54.3 bits (131), Expect = 1e-07
 Identities = 70/274 (25%), Positives = 92/274 (33%), Gaps = 51/274 (18%)

Query: 575 LQYLNLSHNLLSSLQRPFSISDLSP---ITVLDLHSNQLQGNIPY----------PPPKA 621
           LQ L L  N L         S L P   +  L L  N+    IP                
Sbjct: 25  LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRGLQSLLQGLTKGCGL 83

Query: 622 VLVDYSNNSFTSSIPDDIGNFVSFTLFFS-----LSNNSITGVIPETLCRA-----KYLL 671
             +D S+N+     PD  G   S     S     L+NN +       L +        L 
Sbjct: 84  QELDLSDNALG---PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALE 140

Query: 672 VLDLSKNKLSGKMPTCLIKMSEI------LGVLNLRGNSLSG----TLSVTFPGNCGLHT 721
            L L +N+L G        +++       L  LNL  N +       L+     NC L  
Sbjct: 141 KLVLGRNRLEG---ASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEV 197

Query: 722 LDLNGNQLGGTVPKSLANC----RNLVVLDLGNNKIRDT-----FPWWLENISSLRVLVL 772
           LDLN N L      +LA      ++L VL+LG+N + D          L    SL  L L
Sbjct: 198 LDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSL 257

Query: 773 RSNSF--YGNISCRENGDSWPKLQIVDLASNNFG 804
             N     G     E       L  +DL  N FG
Sbjct: 258 SCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.4 bits (131), Expect = 2e-07
 Identities = 45/138 (32%), Positives = 63/138 (45%), Gaps = 20/138 (14%)

Query: 31  QSDQQSLLLQMKSSLVFNSSLSFRMVQWSQSNDCCT-----WSGVDC---DEAGR--VIG 80
             ++ S L  +KSSL            W+   D C      WSG DC      G+  + G
Sbjct: 370 LLEEVSALQTLKSSLGLPLRFG-----WN--GDPCVPQQHPWSGADCQFDSTKGKWFIDG 422

Query: 81  LDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFA 140
           L L  + +   I N      L++LQS+NL+ N      IP  LGS+T+L  L+LS   F 
Sbjct: 423 LGLDNQGLRGFIPNDIS--KLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSFN 479

Query: 141 GQIPIQVSGMTRLVTLDL 158
           G IP  +  +T L  L+L
Sbjct: 480 GSIPESLGQLTSLRILNL 497

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 53.5 bits (129), Expect = 2e-07
 Identities = 73/338 (21%), Positives = 118/338 (34%), Gaps = 74/338 (21%)

Query: 282 VHTLETLDLSGNSLLQGSLPDFPK----NSSLRTLMLSNTNFSG-------VLPDSIGNL 330
           +  L+ L L GN+L + +            SL+ L LS  N +G        L   +   
Sbjct: 22  LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLS-LNETGRIPRGLQSLLQGLTKG 80

Query: 331 KNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNL---THLDLSY 387
             L  LDL+           L +L +   L             L ++ N      L L  
Sbjct: 81  CGLQELDLSDNALGPDGCGVLESLLRSSSLQE-----------LKLNNNGLGDRGLRLLA 129

Query: 388 NALPGAISSTDWEHLSNLVYVDLRYNSLNG----SIPGSLFSLPMLQQLQLAENKFGG-- 441
             L         +    L  + L  N L G    ++  +L +   L++L LA N  G   
Sbjct: 130 KGLK--------DLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181

Query: 442 ---LIPEFSNASSSALDTIDLSGNRL--EGPIPMS--IFDLRNLKILILSSNKLN--GTV 492
              L       ++  L+ +DL+ N L  EG   ++  +  L++L++L L  N L   G  
Sbjct: 182 IRALAEGL--KANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA 239

Query: 493 QLAAIQRLHN--LAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLF 550
            LA+     N  L  L LS N++T +           + L        V+     +  L 
Sbjct: 240 ALASALLSPNISLLTLSLSCNDITDDG---------AKDLA------EVLA---EKESLL 281

Query: 551 NLDLSDNQISGEIPNWVWEIG---NVSLQYLNLSHNLL 585
            LDL  N+   E    + E        L+ L +  +  
Sbjct: 282 ELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.9 bits (127), Expect = 7e-07
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)

Query: 216 LSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTF 275
           L L +  L G I   ++KL+ L  I L  N +   +P  L    +L  L LS++  NG+ 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 276 PEKILQVHTLETLDLSGNSLLQGSLP 301
           PE + Q+ +L  L+L+GNS L G +P
Sbjct: 483 PESLGQLTSLRILNLNGNS-LSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.7 bits (124), Expect = 2e-06
 Identities = 41/126 (32%), Positives = 59/126 (46%), Gaps = 14/126 (11%)

Query: 600 ITVLDLHSNQLQGNIPYPPPK---AVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSI 656
           I  L L +  L+G IP    K      ++ S NS   +IP  +G+  S  +   LS NS 
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVL-DLSYNSF 478

Query: 657 TGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGN 716
            G IPE+L +   L +L+L+ N LSG++P         LG   L   S + T +    G 
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAA-------LGGRLLHRASFNFTDN---AGL 528

Query: 717 CGLHTL 722
           CG+  L
Sbjct: 529 CGIPGL 534

Length = 623

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 50.3 bits (120), Expect = 5e-06
 Identities = 78/285 (27%), Positives = 115/285 (40%), Gaps = 36/285 (12%)

Query: 100 SLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLS 159
           SL  L++++L  +  N  EIP  L   TNL  L LS+     ++P  +  + +L  LD+S
Sbjct: 632 SLTGLRNIDLRGSK-NLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689

Query: 160 SLNRF-----GAPLK-LENPNLSG------LLQNLAELRELYLDGANISAPGIEWCQALS 207
                     G  LK L   NLSG             +  L LD   I        +   
Sbjct: 690 RCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAI--------EEFP 741

Query: 208 SLVPKLQVLSLSSCYLSG--------PIHPSLAKLQ-SLSVIRLDQNDLLSPVPEFLADF 258
           S +    +  L  C +          P+ P +  L  SL+ + L     L  +P  + + 
Sbjct: 742 SNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNL 801

Query: 259 FNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTN 318
             L  L + +     T P  I  + +LE+LDLSG S L+ + PD   N S   L LS T 
Sbjct: 802 HKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLR-TFPDISTNIS--DLNLSRTG 857

Query: 319 FSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLS 363
              V P  I    NLS LD+  C     +  +++ L  L  +D S
Sbjct: 858 IEEV-PWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFS 901

syringae 6; Provisional. Length = 1153

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.8 bits (119), Expect = 7e-06
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 2/87 (2%)

Query: 722 LDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNI 781
           L L+   L G +P  ++  R+L  ++L  N IR   P  L +I+SL VL L  NSF G+I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 782 SCRENGDSWPKLQIVDLASNNFGGRVP 808
              E+      L+I++L  N+  GRVP
Sbjct: 483 P--ESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.4 bits (118), Expect = 8e-06
 Identities = 21/43 (48%), Positives = 32/43 (74%)

Query: 867 TSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIG 909
             +D S N+F+G IPE +G+L SL  LNL+ N+L+G +P+A+G
Sbjct: 469 EVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.7 bits (116), Expect = 1e-05
 Identities = 28/84 (33%), Positives = 42/84 (50%)

Query: 698 LNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTF 757
           L L    L G +         L +++L+GN + G +P SL +  +L VLDL  N    + 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 758 PWWLENISSLRVLVLRSNSFYGNI 781
           P  L  ++SLR+L L  NS  G +
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 47.9 bits (114), Expect = 3e-05
 Identities = 86/331 (25%), Positives = 139/331 (41%), Gaps = 64/331 (19%)

Query: 260 NLTSLRLSHSRLNGTFPEKILQ-VHT---LETLDLSGNSLLQGSLPDFPKNSSLRTLMLS 315
           NL  L++  S+L     EK+   VH+   L  +DL G+  L+  +PD    ++L TL LS
Sbjct: 612 NLVKLQMQGSKL-----EKLWDGVHSLTGLRNIDLRGSKNLK-EIPDLSMATNLETLKLS 665

Query: 316 NTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLH 375
           + +    LP SI  L  L  LD++ C     +PT + NL  L  L+LS    +   P + 
Sbjct: 666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI- 723

Query: 376 MSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLA 435
            S N++ LDL   A+    S+   E+L  L+  +++   L   +      + ML      
Sbjct: 724 -STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTML------ 776

Query: 436 ENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLA 495
                          S +L  + LS       +P SI +L  L+ L              
Sbjct: 777 ---------------SPSLTRLFLSDIPSLVELPSSIQNLHKLEHL-------------- 807

Query: 496 AIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASC-KLRVIPNLKNQSKLFNLDL 554
            I+   NL  L    N             S + +L L+ C +LR  P++   + + +L+L
Sbjct: 808 EIENCINLETLPTGIN-----------LES-LESLDLSGCSRLRTFPDI--STNISDLNL 853

Query: 555 SDNQISGEIPNWVWEIGNVSLQYLNLSHNLL 585
           S   I  E+P W+ +  N+S   +N  +NL 
Sbjct: 854 SRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ 883

syringae 6; Provisional. Length = 1153

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.1 bits (100), Expect = 3e-05
 Identities = 19/60 (31%), Positives = 28/60 (46%)

Query: 308 SLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKF 367
           +L++L LSN   + +   +   L NL  LDL+        P + + L  L  LDLS N  
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.1 bits (100), Expect = 3e-05
 Identities = 25/60 (41%), Positives = 32/60 (53%)

Query: 889 SLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNL 948
           +L  L+LS N LT     A   L  L+ LDLS N+L+   P   + L  L  L+LS NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.5 bits (113), Expect = 4e-05
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)

Query: 673 LDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGT 732
           L L    L G +P  + K+   L  +NL GNS+ G +  +      L  LDL+ N   G+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRH-LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 733 VPKSLANCRNLVVLDLGNNKIRDTFP 758
           +P+SL    +L +L+L  N +    P
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 46.1 bits (109), Expect = 8e-05
 Identities = 81/289 (28%), Positives = 118/289 (40%), Gaps = 16/289 (5%)

Query: 230 SLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLD 289
            L +L +L+ + LD N++    P       NL  L LS +++  + P  +  +  L+ LD
Sbjct: 111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLD 169

Query: 290 LSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPT 349
           LS N L           S+L  L LS    S  LP  I  L  L  LDL+       + +
Sbjct: 170 LSFNDLSDLP-KLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSN-NSIIELLS 226

Query: 350 SLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVD 409
           SL+NL  L  L+LS NK      S+    NL  LDLS N +    S +    L+NL  +D
Sbjct: 227 SLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQI---SSISSLGSLTNLRELD 283

Query: 410 LRYNSLNGSIP--GSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGP 467
           L  NSL+ ++P    L  L  L    L   K   L       +++ L   + S       
Sbjct: 284 LSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGETS------- 336

Query: 468 IPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVN 516
            P ++  L +L  L    N L+ +     I +  N     L      VN
Sbjct: 337 SPEALSILESLNNLWTLDNALDESNLNRYIVKNPNAIGSLLDLVKKHVN 385

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.0 bits (97), Expect = 8e-05
 Identities = 20/59 (33%), Positives = 28/59 (47%)

Query: 695 LGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKI 753
           L  L+L  N L+      F G   L  LDL+GN L    P++ +   +L  LDL  N +
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.2 bits (107), Expect = 2e-04
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 3/69 (4%)

Query: 81  LDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFA 140
           ++LS  SI   I  S  L S+  L+ L+L++N FN + IP  LG LT+L  LNL+    +
Sbjct: 447 INLSGNSIRGNIPPS--LGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLNGNSLS 503

Query: 141 GQIPIQVSG 149
           G++P  + G
Sbjct: 504 GRVPAALGG 512

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 44.7 bits (106), Expect = 2e-04
 Identities = 61/265 (23%), Positives = 86/265 (32%), Gaps = 65/265 (24%)

Query: 120 PSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLL 179
             GL     L  L+LS+          +  + R  +L           LKL N  L    
Sbjct: 74  LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQE---------LKLNNNGLGD-- 122

Query: 180 QNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKL----Q 235
                       G  +        + L  L P L+ L L    L G    +LAK     +
Sbjct: 123 -----------RGLRLL------AKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANR 165

Query: 236 SLSVIRLDQNDLLSP----VPEFLADFFNLTSLRLSHSRLN----GTFPEKILQVHTLET 287
            L  + L  N +       + E L    NL  L L+++ L         E +  + +LE 
Sbjct: 166 DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEV 225

Query: 288 LDLSGNSL----LQGSLPDFPK-NSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCY 342
           L+L  N+L               N SL TL LS             ++ +    DLA   
Sbjct: 226 LNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN-----------DITDDGAKDLA--- 271

Query: 343 FDGSIPTSLANLTQLVYLDLSFNKF 367
                   LA    L+ LDL  NKF
Sbjct: 272 ------EVLAEKESLLELDLRGNKF 290

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 44.7 bits (106), Expect = 2e-04
 Identities = 70/326 (21%), Positives = 100/326 (30%), Gaps = 95/326 (29%)

Query: 372 PSLHMSKNLTHLDLSYNALPGAISSTD-----WEHLSNLVYVDLRYNSLNGSIPGSLFSL 426
            +L    +L  L LS N                     L  +DL  N+L     G L SL
Sbjct: 45  SALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESL 104

Query: 427 ---PMLQQLQLAENKFGGLIPEFSNAS----SSALDTIDLSGNRLEGPIPMSIFDLRNLK 479
                LQ+L+L  N  G                AL+ + L  NRLEG    S   L    
Sbjct: 105 LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA---SCEALAKA- 160

Query: 480 ILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRV 539
                         L A + L    +L L+ N +      D+   +    L+ A+C L V
Sbjct: 161 --------------LRANRDLK---ELNLANNGIG-----DAGIRALAEGLK-ANCNLEV 197

Query: 540 IPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSP 599
           + +L N       D   + ++  + +        SL+ LNL  N L+        + L+ 
Sbjct: 198 L-DLNNNG--LT-DEGASALAETLASLK------SLEVLNLGDNNLTDA----GAAALAS 243

Query: 600 ITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGV 659
             +    S                                       L  SLS N IT  
Sbjct: 244 ALLSPNIS--------------------------------------LLTLSLSCNDITDD 265

Query: 660 IPETLCRA----KYLLVLDLSKNKLS 681
             + L       + LL LDL  NK  
Sbjct: 266 GAKDLAEVLAEKESLLELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 454 LDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNL 513
           L ++DLS NRL      +   L NLK+L LS N L  ++   A   L +L  L+LS NNL
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 20/60 (33%), Positives = 27/60 (45%)

Query: 718 GLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSF 777
            L +LDL+ N+L      +     NL VLDL  N +    P     + SLR L L  N+ 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.1 bits (99), Expect = 0.001
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 8/78 (10%)

Query: 119 IPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGL 178
           IP+ +  L +L ++NLS     G IP  +  +T L  LDL S N F       N ++   
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDL-SYNSF-------NGSIPES 485

Query: 179 LQNLAELRELYLDGANIS 196
           L  L  LR L L+G ++S
Sbjct: 486 LGQLTSLRILNLNGNSLS 503

Length = 623

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)

Query: 38 LLQMKSSLVFNSSLSFRMVQWSQSN-DCCTWSGVDCD 73
          LL  KSSL  + S +     W+ S+ D C+W+GV CD
Sbjct: 8  LLAFKSSLNGDPSGALS--SWNPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.004
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 526 QVRTLRLASCKLRVIPN--LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHN 583
            +++L L++ +L VIP+   K    L  LDLS N ++   P      G  SL+ L+LS N
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFS--GLPSLRSLDLSGN 58

Query: 584 LL 585
            L
Sbjct: 59  NL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.004
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 285 LETLDLSGNSLLQGSLPD--FPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDL 338
           L++LDLS N L    +PD  F    +L+ L LS  N + + P++   L +L  LDL
Sbjct: 2   LKSLDLSNNRLT--VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDL 55

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1044
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.95
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.88
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.87
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.85
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.85
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.78
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.77
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.68
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.67
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.61
PLN03150	623	hypothetical protein; Provisional	99.61
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.53
PLN03150	623	hypothetical protein; Provisional	99.46
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.16
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.1
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.0
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.98
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.97
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.96
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.95
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.91
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.85
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.79
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.77
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.71
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.7
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.69
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.67
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.65
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.64
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.61
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.6
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.48
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.47
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.29
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.15
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.1
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.03
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.02
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.97
KOG4341	483	consensus F-box protein containing LRR [General fu	97.94
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.92
PRK15386	426	type III secretion protein GogB; Provisional	97.69
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.63
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.6
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.59
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.55
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.54
PRK15386	426	type III secretion protein GogB; Provisional	97.51
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.5
KOG4341	483	consensus F-box protein containing LRR [General fu	97.42
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.11
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.82
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.79
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.66
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.43
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.31
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.17
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.34
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.13
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.93
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.54
KOG4308	478	consensus LRR-containing protein [Function unknown	93.95
KOG4308	478	consensus LRR-containing protein [Function unknown	93.72
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.24
KOG0473	326	consensus Leucine-rich repeat protein [Function un	87.81
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	86.13
KOG3864	221	consensus Uncharacterized conserved protein [Funct	83.75
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	80.91
smart00370	26	LRR Leucine-rich repeats, outliers.	80.91

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=8.5e-69  Score=686.77  Aligned_cols=584  Identities=37%  Similarity=0.591  Sum_probs=379.8

Q ss_pred             hHHHHHHHHHHHhcCcCCCCCccccCCCCCCCCCcccceeEeCCCCCeEEEeCCCCCccCccCCCCCcccCCCCCcccCC
Q 001612           31 QSDQQSLLLQMKSSLVFNSSLSFRMVQWSQSNDCCTWSGVDCDEAGRVIGLDLSEESISAGIDNSSPLFSLKYLQSLNLA  110 (1044)
Q Consensus        31 ~~~~~~~ll~~k~~~~~~~~~~~~l~~W~~~~~~c~w~gv~C~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~LdLs  110 (1044)
                      .++|++||++||+++. +|.  +.+++|..+.|||.|+||+|+..++|+.|+|+++.+.|.+++  ++..+++|++|||+
T Consensus        27 ~~~~~~~l~~~~~~~~-~~~--~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~--~~~~l~~L~~L~Ls  101 (968)
T PLN00113         27 HAEELELLLSFKSSIN-DPL--KYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISS--AIFRLPYIQTINLS  101 (968)
T ss_pred             CHHHHHHHHHHHHhCC-CCc--ccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCCh--HHhCCCCCCEEECC
Confidence            4689999999999996 454  368899888899999999998778999999999998887643  67777778888887


Q ss_pred             CCCCCCCCCCCcCC-CCCCCCEEEcCCCCCCCCCCccccCCCCCcEEecCCCCCCCCCcccCCCChhHHhhccccCceec
Q 001612          111 FNMFNATEIPSGLG-SLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELY  189 (1044)
Q Consensus       111 ~n~~~~~~lp~~l~-~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~l~~~l~~l~~L~~L~  189 (1044)
                      +|.+.+. +|..+. .+++|++|+|++|.+++.+|.  +.+                                       
T Consensus       102 ~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l---------------------------------------  139 (968)
T PLN00113        102 NNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSI---------------------------------------  139 (968)
T ss_pred             CCccCCc-CChHHhccCCCCCEEECcCCccccccCc--ccc---------------------------------------
Confidence            7777665 666544 777777777777777666653  222                                       


Q ss_pred             CCCccCCCchhhhHHHHhccCCCceEEecCCCCCCCCCcccccCCCCCCEEECCCCCCCCCChHhhhCCCCCcEEEccCC
Q 001612          190 LDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHS  269 (1044)
Q Consensus       190 l~~~~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n  269 (1044)
                                           ++|++|++++|.+.+..|..++++++|++|++++|.+.+.+|..++++++|++|++++|
T Consensus       140 ---------------------~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n  198 (968)
T PLN00113        140 ---------------------PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN  198 (968)
T ss_pred             ---------------------CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCC
Confidence                                 34444444455555556666666777777777777666666666666666666666666


Q ss_pred             CCCCCcChhhcCCCCCCEEECCCCCCCCCCCCCCCCCCCCcEEEccCCcCCccCcccccCCCCCCEEeccCccCCCCCch
Q 001612          270 RLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPT  349 (1044)
Q Consensus       270 ~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~  349 (1044)
                      .+.+.+|..++++++|++|++++|                        .+++.+|..++++++|++|++++|.+.+.+|.
T Consensus       199 ~l~~~~p~~l~~l~~L~~L~L~~n------------------------~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  254 (968)
T PLN00113        199 QLVGQIPRELGQMKSLKWIYLGYN------------------------NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS  254 (968)
T ss_pred             CCcCcCChHHcCcCCccEEECcCC------------------------ccCCcCChhHhcCCCCCEEECcCceeccccCh
Confidence            666666655555544444444433                        33445555555666666666666665555555


Q ss_pred             hhcCCCCCcEEeCcCCcccCCCCcccCCCcccEEEccCCCCCCCCCchhhhcCCCccEEEeecCcCCCCCCcccCCCccc
Q 001612          350 SLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPML  429 (1044)
Q Consensus       350 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  429 (1044)
                      .++++++|++|++++|.+.+.                       +|.. +.++++|++|++++|.+.+.+|..+..+++|
T Consensus       255 ~l~~l~~L~~L~L~~n~l~~~-----------------------~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  310 (968)
T PLN00113        255 SLGNLKNLQYLFLYQNKLSGP-----------------------IPPS-IFSLQKLISLDLSDNSLSGEIPELVIQLQNL  310 (968)
T ss_pred             hHhCCCCCCEEECcCCeeecc-----------------------Cchh-HhhccCcCEEECcCCeeccCCChhHcCCCCC
Confidence            555555555555555544332                       2222 3444445555555544444444444333333


Q ss_pred             ceeecCCcccCCCCCcccccCCCCCCEEEcCCCcCCCCCCchhhcCCCccEEEecCCcccCccchHHHHhCCCCCeEeCC
Q 001612          430 QQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELS  509 (1044)
Q Consensus       430 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  509 (1044)
                      +.|++++                         |.+.+..|..+..+++|+.|++++|.+.+.+|..              
T Consensus       311 ~~L~l~~-------------------------n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~--------------  351 (968)
T PLN00113        311 EILHLFS-------------------------NNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN--------------  351 (968)
T ss_pred             cEEECCC-------------------------CccCCcCChhHhcCCCCCEEECcCCCCcCcCChH--------------
Confidence            3333332                         2333333333444444444444444433222211              


Q ss_pred             CceeeeecCCCCCCCccccEEEccCCCCcCCCCccCCCCCcEEECCCCcCCCCCChhHhhhcccccceeecccccccCcc
Q 001612          510 YNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQ  589 (1044)
Q Consensus       510 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~l~  589 (1044)
                                                       +..+++|+.|++++|++.+.+|                         
T Consensus       352 ---------------------------------l~~~~~L~~L~Ls~n~l~~~~p-------------------------  373 (968)
T PLN00113        352 ---------------------------------LGKHNNLTVLDLSTNNLTGEIP-------------------------  373 (968)
T ss_pred             ---------------------------------HhCCCCCcEEECCCCeeEeeCC-------------------------
Confidence                                             1112223333333333333222                         


Q ss_pred             CCcccCCCCCCceEEcCCCcccCCCCCCCCCCcEEEccCCcCCcCCChhhhhccccceEEeccCCcccCcCccchhccCC
Q 001612          590 RPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKY  669 (1044)
Q Consensus       590 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~  669 (1044)
                                                                                              ..++.+++
T Consensus       374 ------------------------------------------------------------------------~~~~~~~~  381 (968)
T PLN00113        374 ------------------------------------------------------------------------EGLCSSGN  381 (968)
T ss_pred             ------------------------------------------------------------------------hhHhCcCC
Confidence                                                                                    23333344


Q ss_pred             CcEEEccCCcccccCChhHhhcccccceEECCCCcCcCccCCCCCCCCCccEEeCCCCCCcccCcccccCCCCCcEEECC
Q 001612          670 LLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLG  749 (1044)
Q Consensus       670 L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  749 (1044)
                      |+.|++++|++.+.+|..+..+ ++|+.|++++|++++.+|..|..+++|+.|++++|.+++.+|..+..+++|+.|+++
T Consensus       382 L~~L~l~~n~l~~~~p~~~~~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  460 (968)
T PLN00113        382 LFKLILFSNSLEGEIPKSLGAC-RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLA  460 (968)
T ss_pred             CCEEECcCCEecccCCHHHhCC-CCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECc
Confidence            4444445555444455444443 455555555555555555555666667777777777777777666677777777777


Q ss_pred             CCccccCCChhhhcCCCCcEEEccCCccccCCCCCCCCCCCCcccEEEcCCCcCCCcCChhhHhhhhhcccchhhhcccc
Q 001612          750 NNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNF  829 (1044)
Q Consensus       750 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~  829 (1044)
                      +|++.+.+|..++ .+                          +|+.||+++|+++|.+|...                  
T Consensus       461 ~n~~~~~~p~~~~-~~--------------------------~L~~L~ls~n~l~~~~~~~~------------------  495 (968)
T PLN00113        461 RNKFFGGLPDSFG-SK--------------------------RLENLDLSRNQFSGAVPRKL------------------  495 (968)
T ss_pred             CceeeeecCcccc-cc--------------------------cceEEECcCCccCCccChhh------------------
Confidence            7777766664432 22                          34445555555555555321                  


Q ss_pred             cccccccccccccccccceEEeecCchhhHhhhcCcceEEEccCCcccccCCcccCCCCCCCEEeCCCCCCcCCCccccc
Q 001612          830 KDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIG  909 (1044)
Q Consensus       830 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~ip~~~~  909 (1044)
                                                     ..++.|+.|||++|+++|.+|.+++++++|++|+|++|.++|.+|..++
T Consensus       496 -------------------------------~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  544 (968)
T PLN00113        496 -------------------------------GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS  544 (968)
T ss_pred             -------------------------------hhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHh
Confidence                                           1255677888899999999999999999999999999999999999999


Q ss_pred             CcCCCCEEeCCCCccccccCccccCCCCCcEEECcCCcccccCCCcccccccccccccCCCCCCCCC
Q 001612          910 NLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLVGKIPISTQLQSFLATSFEGNKGLCGPP  976 (1044)
Q Consensus       910 ~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~ip~~~~~~~~~~~~~~~n~~lcg~~  976 (1044)
                      ++++|+.|||++|+++|.+|..+.++++|+++++++|+++|.+|...++.++...++.||+++||++
T Consensus       545 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        545 EMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             CcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999865

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.1e-54  Score=556.53  Aligned_cols=515  Identities=36%  Similarity=0.503  Sum_probs=384.1

Q ss_pred             CCCcEEEccCCcCCccCcccccCCCCCCEEeccCccCCCCCchhhc-CCCCCcEEeCcCCcccCCCCcccCCCcccEEEc
Q 001612          307 SSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLA-NLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDL  385 (1044)
Q Consensus       307 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L  385 (1044)
                      .+++.|++++|.+++.++..+..+++|+.|++++|.+.+.+|..+. .+++|++|++++|.+++.+|. ...++|++|++
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~L  147 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDL  147 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-cccCCCCEEEC
Confidence            4577788888888888888888888888888888888877777654 888888888888888776664 23467777777


Q ss_pred             cCCCCCCCCCchhhhcCCCccEEEeecCcCCCCCCcccCCCcccceeecCCcccCCCCCcccccCCCCCCEEEcCCCcCC
Q 001612          386 SYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLE  465 (1044)
Q Consensus       386 ~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~  465 (1044)
                      ++|.+.+.+|.. ++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|.... .+.+|++|++++|.++
T Consensus       148 s~n~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~  225 (968)
T PLN00113        148 SNNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG-QMKSLKWIYLGYNNLS  225 (968)
T ss_pred             cCCcccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHc-CcCCccEEECcCCccC
Confidence            777777666665 77777777777777777777777777777777776666666555443222 2445555555555555


Q ss_pred             CCCCchhhcCCCccEEEecCCcccCccchHHHHhCCCCCeEeCCCceeeeecCCCCCCCccccEEEccCCCCcCCCCccC
Q 001612          466 GPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKN  545 (1044)
Q Consensus       466 ~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~~  545 (1044)
                      +.+|..+.++++|++|++++|.+.+.+|..                                               +.+
T Consensus       226 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-----------------------------------------------l~~  258 (968)
T PLN00113        226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-----------------------------------------------LGN  258 (968)
T ss_pred             CcCChhHhcCCCCCEEECcCceeccccChh-----------------------------------------------HhC
Confidence            555555555555555555555554433322                                               334


Q ss_pred             CCCCcEEECCCCcCCCCCChhHhhhcccccceeecccccccCccCCcccCCCCCCceEEcCCCcccCCCCCCCCCCcEEE
Q 001612          546 QSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVD  625 (1044)
Q Consensus       546 l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~  625 (1044)
                      +++|+.|++++|.+.+.+|..+..+                           ++|++|++++|.+.+.+           
T Consensus       259 l~~L~~L~L~~n~l~~~~p~~l~~l---------------------------~~L~~L~Ls~n~l~~~~-----------  300 (968)
T PLN00113        259 LKNLQYLFLYQNKLSGPIPPSIFSL---------------------------QKLISLDLSDNSLSGEI-----------  300 (968)
T ss_pred             CCCCCEEECcCCeeeccCchhHhhc---------------------------cCcCEEECcCCeeccCC-----------
Confidence            4455555555555555555444332                           23444444444433322           


Q ss_pred             ccCCcCCcCCChhhhhccccceEEeccCCcccCcCccchhccCCCcEEEccCCcccccCChhHhhcccccceEECCCCcC
Q 001612          626 YSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSL  705 (1044)
Q Consensus       626 ls~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l  705 (1044)
                                |..+. .+++|+.|++++|.+++.+|..++.+++|+.|++++|++++.+|..+..+ ++|+.|++++|++
T Consensus       301 ----------p~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~-~~L~~L~Ls~n~l  368 (968)
T PLN00113        301 ----------PELVI-QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH-NNLTVLDLSTNNL  368 (968)
T ss_pred             ----------ChhHc-CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCC-CCCcEEECCCCee
Confidence                      22222 24556666666666666677777778888888888888888888877776 7888888888888


Q ss_pred             cCccCCCCCCCCCccEEeCCCCCCcccCcccccCCCCCcEEECCCCccccCCChhhhcCCCCcEEEccCCccccCCCCCC
Q 001612          706 SGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRE  785 (1044)
Q Consensus       706 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i~~~~  785 (1044)
                      ++.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++++.+|..+.++++|+.|++++|.+.|.+  +.
T Consensus       369 ~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--~~  446 (968)
T PLN00113        369 TGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI--NS  446 (968)
T ss_pred             EeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCcc--Ch
Confidence            8888888888888888999999888888888888899999999999998888888888999999999999988877  66


Q ss_pred             CCCCCCcccEEEcCCCcCCCcCChhhHhhhhhcccchhhhcccccccccccccccccccccceEEeecCchhhHhhhcCc
Q 001612          786 NGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSI  865 (1044)
Q Consensus       786 ~~~~l~~L~~Ldls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  865 (1044)
                      .+..+++|+.|++++|++.|.+|...                                                  ..+.
T Consensus       447 ~~~~l~~L~~L~L~~n~~~~~~p~~~--------------------------------------------------~~~~  476 (968)
T PLN00113        447 RKWDMPSLQMLSLARNKFFGGLPDSF--------------------------------------------------GSKR  476 (968)
T ss_pred             hhccCCCCcEEECcCceeeeecCccc--------------------------------------------------cccc
Confidence            67788899999999999988887421                                                  1356


Q ss_pred             ceEEEccCCcccccCCcccCCCCCCCEEeCCCCCCcCCCcccccCcCCCCEEeCCCCccccccCccccCCCCCcEEECcC
Q 001612          866 FTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSH  945 (1044)
Q Consensus       866 l~~LdLs~N~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~  945 (1044)
                      |+.||+++|+++|.+|..++++++|+.|+|++|+++|.+|..++++++|++|+|++|+++|.+|..++++++|+.|++++
T Consensus       477 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  556 (968)
T PLN00113        477 LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQ  556 (968)
T ss_pred             ceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCC
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCCcc-cccccccccccCCCCCC
Q 001612          946 NNLVGKIPIST-QLQSFLATSFEGNKGLC  973 (1044)
Q Consensus       946 N~l~g~ip~~~-~~~~~~~~~~~~n~~lc  973 (1044)
                      |+++|.+|... .+..+....+.+|+..+
T Consensus       557 N~l~~~~p~~l~~l~~L~~l~ls~N~l~~  585 (968)
T PLN00113        557 NQLSGEIPKNLGNVESLVQVNISHNHLHG  585 (968)
T ss_pred             CcccccCChhHhcCcccCEEeccCCccee
Confidence            99999999752 23344555666776443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.1e-38  Score=327.27  Aligned_cols=430  Identities=23%  Similarity=0.312  Sum_probs=258.7

Q ss_pred             CCCCCCCCCcEEEccCCcCCccCcccccCCCCCCEEeccCccCCCCCchhhcCCCCCcEEeCcCCcccCCCCcccCCCcc
Q 001612          301 PDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNL  380 (1044)
Q Consensus       301 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L  380 (1044)
                      ..+..-..|+.+.+++|.+. .+.+.+.++..|.+|++.+|++. ..|.+++.+..++.++.++|++...++......++
T Consensus        39 e~wW~qv~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l  116 (565)
T KOG0472|consen   39 ENWWEQVDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSELPEQIGSLISL  116 (565)
T ss_pred             hhhhhhcchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhh
Confidence            33444556667777777766 33445677778888888888777 56777777888888888888877666666666777


Q ss_pred             cEEEccCCCCCCCCCchhhhcCCCccEEEeecCcCCCCCCcccCCCcccceeecCCcccCCCCCcccccCCCCCCEEEcC
Q 001612          381 THLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLS  460 (1044)
Q Consensus       381 ~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls  460 (1044)
                      ..++.++|.+. +++++ ++.+..|+.++..+|+++ ..|+.+.++.+|..+++.+|++....|+...  ...|+++|..
T Consensus       117 ~~l~~s~n~~~-el~~~-i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~--m~~L~~ld~~  191 (565)
T KOG0472|consen  117 VKLDCSSNELK-ELPDS-IGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA--MKRLKHLDCN  191 (565)
T ss_pred             hhhhcccccee-ecCch-HHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH--HHHHHhcccc
Confidence            77788777776 55555 778888888888888887 6777888888888888888888876665544  5678888888


Q ss_pred             CCcCCCCCCchhhcCCCccEEEecCCcccCccchHHHHhCCCCCeEeCCCceeeeecCCCCCCCccccEEEccCCCCcCC
Q 001612          461 GNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVI  540 (1044)
Q Consensus       461 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~l  540 (1044)
                      .|.++ .+|..++.+.+|+.|++..|++. .+|  .|.+|..|+++++..|.+..++.......+++..|++..|+++++
T Consensus       192 ~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP--ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~  267 (565)
T KOG0472|consen  192 SNLLE-TLPPELGGLESLELLYLRRNKIR-FLP--EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEV  267 (565)
T ss_pred             hhhhh-cCChhhcchhhhHHHHhhhcccc-cCC--CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccC
Confidence            87776 78888888888888888888886 555  377777777777777777666655555555555666666666655


Q ss_pred             CC-ccCCCCCcEEECCCCcCCCCCChhHhhhcccccceeecccccccCccCCccc-CCCCCCceEEcCCCcccCCCCCCC
Q 001612          541 PN-LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSI-SDLSPITVLDLHSNQLQGNIPYPP  618 (1044)
Q Consensus       541 ~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~l~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~  618 (1044)
                      |. +.-+.+|..||+|+|.|+ .+|..++.+   +|+.|-+.+|.+..+.....- +.-.-|++|.=   .+...-    
T Consensus       268 Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl---hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs---~~~~dg----  336 (565)
T KOG0472|consen  268 PDEICLLRSLERLDLSNNDIS-SLPYSLGNL---HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS---KIKDDG----  336 (565)
T ss_pred             chHHHHhhhhhhhcccCCccc-cCCcccccc---eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH---hhccCC----
Confidence            55 445555555555555555 334333333   244444444444433111000 00000111100   000000    


Q ss_pred             CCCcEEEccCCcCCcCCChhhhhccccceEEeccCCcccCcCccchhccCCCcEEEccCCcccccCChhHhhcccccceE
Q 001612          619 PKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVL  698 (1044)
Q Consensus       619 ~~l~~l~ls~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L  698 (1044)
                             ++..  .|.          .-..-+    ...+ .........+.+.|+++.-+++ .+|+..+...+     
T Consensus       337 -------lS~s--e~~----------~e~~~t----~~~~-~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~-----  386 (565)
T KOG0472|consen  337 -------LSQS--EGG----------TETAMT----LPSE-SFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAK-----  386 (565)
T ss_pred             -------CCCC--ccc----------ccccCC----CCCC-cccchhhhhhhhhhcccccccc-cCCHHHHHHhh-----
Confidence                   0000  000          000000    0000 1111223445667777777777 67776665421     


Q ss_pred             ECCCCcCcCccCCCCCCCCCccEEeCCCCCCcccCcccccCCCCCcEEECCCCccccCCChhhhcCCCCcEEEccCCccc
Q 001612          699 NLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFY  778 (1044)
Q Consensus       699 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  778 (1044)
                                       -.-.+..++++|++. .+|..+..++.+.+.-+..|+..+.+|..+..+++|..|+|++|.+.
T Consensus       387 -----------------~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln  448 (565)
T KOG0472|consen  387 -----------------SEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN  448 (565)
T ss_pred             -----------------hcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh
Confidence                             112456666777766 66777766666555444444444566777777777777777777664


Q ss_pred             cCCCCCCCCCCCCcccEEEcCCCcC
Q 001612          779 GNISCRENGDSWPKLQIVDLASNNF  803 (1044)
Q Consensus       779 g~i~~~~~~~~l~~L~~Ldls~N~l  803 (1044)
                      ..   |..++.+..|+.||+|.|+|
T Consensus       449 ~L---P~e~~~lv~Lq~LnlS~NrF  470 (565)
T KOG0472|consen  449 DL---PEEMGSLVRLQTLNLSFNRF  470 (565)
T ss_pred             hc---chhhhhhhhhheeccccccc
Confidence            32   55555555555556655555

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=3.5e-38  Score=323.67  Aligned_cols=491  Identities=29%  Similarity=0.375  Sum_probs=275.3

Q ss_pred             CCceEEecCCCCCCCCCcccccCCCCCCEEECCCCCCCCCChHhhhCCCCCcEEEccCCCCCCCcChhhcCCCCCCEEEC
Q 001612          211 PKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDL  290 (1044)
Q Consensus       211 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  290 (1044)
                      ..++.+++++|.+... .+.+.++..|.+|++++|++.. .|.+++.+..++.|+.++|+++ .+|+.++.+.+|+.++.
T Consensus        45 v~l~~lils~N~l~~l-~~dl~nL~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~  121 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEVL-REDLKNLACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC  121 (565)
T ss_pred             cchhhhhhccCchhhc-cHhhhcccceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence            4677888888877643 3457788888888888887754 4566788888888888888887 77888888888888777


Q ss_pred             CCCCCCCCCCCCCCCCCCCcEEEccCCcCCccCcccccCCCCCCEEeccCccCCCCCchhhcCCCCCcEEeCcCCcccCC
Q 001612          291 SGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGP  370 (1044)
Q Consensus       291 s~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  370 (1044)
                      ++|...+ -.+++..+..|+.++..+|+++ ..|+.+.++.+|..+++.+|++....|. .-+++.|++||.-.|-+...
T Consensus       122 s~n~~~e-l~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~-~i~m~~L~~ld~~~N~L~tl  198 (565)
T KOG0472|consen  122 SSNELKE-LPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPEN-HIAMKRLKHLDCNSNLLETL  198 (565)
T ss_pred             cccceee-cCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHH-HHHHHHHHhcccchhhhhcC
Confidence            7776533 2233444555555555555555 3455555555555555555555533222 22255555555555555544


Q ss_pred             CCcccCCCcccEEEccCCCCCCCCCchhhhcCCCccEEEeecCcCCCCCCcccC-CCcccceeecCCcccCCCCCccccc
Q 001612          371 IPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLF-SLPMLQQLQLAENKFGGLIPEFSNA  449 (1044)
Q Consensus       371 ~~~~~~~~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~  449 (1044)
                      +|...++.+|+.|++.+|++. .+|+  |..|..|+++.++.|++. .+|.+.. +++++..||+.+|++...+.+... 
T Consensus       199 P~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~cl-  273 (565)
T KOG0472|consen  199 PPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICL-  273 (565)
T ss_pred             ChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchHHHH-
Confidence            444555555555555555554 3442  555555555555555554 3333332 455555555555555443332221 


Q ss_pred             CCCCCCEEEcCCCcCCCCCCchhhcCCCccEEEecCCcccCccchHHHHh-----CCCCCeEeCCCceeeeecCCCCCCC
Q 001612          450 SSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQR-----LHNLAKLELSYNNLTVNAGSDSSFP  524 (1044)
Q Consensus       450 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~-----l~~L~~L~L~~n~l~~~~~~~~~~~  524 (1044)
                       +.+|+.||+++|.++ .+|.+++++ .|+.|.+.+|.+. .+..+.+..     ++.|+. .+..-.++.-.+....-+
T Consensus       274 -LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs-~~~~dglS~se~~~e~~~  348 (565)
T KOG0472|consen  274 -LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRS-KIKDDGLSQSEGGTETAM  348 (565)
T ss_pred             -hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHH-hhccCCCCCCcccccccC
Confidence             334555555555555 344455555 5555555555443 221111110     000000 000000000000000000


Q ss_pred             ccccEEEccCCCCcCCCCccCCCCCcEEECCCCcCCCCCChhHhhhcccccceeecccccccCccCCcccCCCCCCceEE
Q 001612          525 SQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLD  604 (1044)
Q Consensus       525 ~~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~  604 (1044)
                            +.   .-..+|......+.+.|++++-+++ .+|+..|.....                        .-...++
T Consensus       349 ------t~---~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~------------------------~~Vt~Vn  394 (565)
T KOG0472|consen  349 ------TL---PSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKS------------------------EIVTSVN  394 (565)
T ss_pred             ------CC---CCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhh------------------------cceEEEe
Confidence                  00   0001223444556777777777776 667766654321                        1133444


Q ss_pred             cCCCcccCCCCCCCCCCcEEEccCCcCCcCCChhhhhccccceEEeccCCcccCcCccchhccCCCcEEEccCCcccccC
Q 001612          605 LHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKM  684 (1044)
Q Consensus       605 l~~n~l~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~i  684 (1044)
                      ++.|++.                      ++|..+...-...+.+.+++|.+ +.+|..++.+++|..|+|++|.+. .+
T Consensus       395 fskNqL~----------------------elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~L  450 (565)
T KOG0472|consen  395 FSKNQLC----------------------ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DL  450 (565)
T ss_pred             cccchHh----------------------hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hc
Confidence            4444443                      44554443222333344444444 467777888888888888888776 78


Q ss_pred             ChhHhhcccccceEECCCCcCcCccCCCCCCCCCccEEeCCCCCCcccCcccccCCCCCcEEECCCCccccCCChhhhcC
Q 001612          685 PTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENI  764 (1044)
Q Consensus       685 p~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l  764 (1044)
                      |..++.+ ..|+.||++.|++. ..|.....+..++.+-.++|++....|..+.++.+|.+||+.+|.+. .+|..++++
T Consensus       451 P~e~~~l-v~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnm  527 (565)
T KOG0472|consen  451 PEEMGSL-VRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNM  527 (565)
T ss_pred             chhhhhh-hhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccc
Confidence            8877776 56777777777665 44555555566666667777777666666777777778888777775 455567777


Q ss_pred             CCCcEEEccCCccc
Q 001612          765 SSLRVLVLRSNSFY  778 (1044)
Q Consensus       765 ~~L~~L~L~~N~l~  778 (1044)
                      ++|++|++.+|+|.
T Consensus       528 tnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  528 TNLRHLELDGNPFR  541 (565)
T ss_pred             cceeEEEecCCccC
Confidence            77777777777665

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-35  Score=314.81  Aligned_cols=367  Identities=26%  Similarity=0.319  Sum_probs=263.1

Q ss_pred             CCCEEeccCccCCCCCchhhcCCCCCcEEeCcCCcccCCCCcccCC-CcccEEEccCCCCCCCCCchhhhcCCCccEEEe
Q 001612          332 NLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMS-KNLTHLDLSYNALPGAISSTDWEHLSNLVYVDL  410 (1044)
Q Consensus       332 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L  410 (1044)
                      .-+.||+++|.+....+..|.++++|+++++..|.++ .+|.+... .+|+.|+|.+|.++ ++..+.++.++.|+.|||
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDL  156 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDL  156 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhh
Confidence            3456888888888878888888888888888888876 45555544 55777777777776 455555777788888888


Q ss_pred             ecCcCCCCCCcccCCCcccceeecCCcccCCCCCcccccCCCCCCEEEcCCCcCCCCCCchhhcCCCccEEEecCCcccC
Q 001612          411 RYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNG  490 (1044)
Q Consensus       411 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  490 (1044)
                      +.|.++...-..|..-.++++|+|                         ++|.|+..-...|.++.+|..|.|+.|+++ 
T Consensus       157 SrN~is~i~~~sfp~~~ni~~L~L-------------------------a~N~It~l~~~~F~~lnsL~tlkLsrNrit-  210 (873)
T KOG4194|consen  157 SRNLISEIPKPSFPAKVNIKKLNL-------------------------ASNRITTLETGHFDSLNSLLTLKLSRNRIT-  210 (873)
T ss_pred             hhchhhcccCCCCCCCCCceEEee-------------------------ccccccccccccccccchheeeecccCccc-
Confidence            888777544444444444555544                         444444444455667777777888888877 


Q ss_pred             ccchHHHHhCCCCCeEeCCCceeeeecCCCCCCCccccEEEccCCCCcCCCC--ccCCCCCcEEECCCCcCCCCCChhHh
Q 001612          491 TVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPN--LKNQSKLFNLDLSDNQISGEIPNWVW  568 (1044)
Q Consensus       491 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~l~~--l~~l~~L~~L~Ls~n~l~~~~p~~~~  568 (1044)
                      .+|...|.++++|+.|+|..|+|..+....|...++|+.|.+..|.+..+.+  |..+.++++|+|+.|+++..-..|++
T Consensus       211 tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf  290 (873)
T KOG4194|consen  211 TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF  290 (873)
T ss_pred             ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc
Confidence            7777778888888888888888877777777777777777777777777665  77777888888888877755555554


Q ss_pred             hhcccccceeecccccccCccCCcccCCCCCCceEEcCCCcccCCCCCCCCCCcEEEccCCcCCcCCChhhhhccccceE
Q 001612          569 EIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLF  648 (1044)
Q Consensus       569 ~~~~~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~~~~~L~~  648 (1044)
                      .+..  |+.|++|+|.|..+.                                               ..-..+++.|++
T Consensus       291 gLt~--L~~L~lS~NaI~rih-----------------------------------------------~d~WsftqkL~~  321 (873)
T KOG4194|consen  291 GLTS--LEQLDLSYNAIQRIH-----------------------------------------------IDSWSFTQKLKE  321 (873)
T ss_pred             ccch--hhhhccchhhhheee-----------------------------------------------cchhhhccccee
Confidence            4432  444444444333321                                               111234677888


Q ss_pred             EeccCCcccCcCccchhccCCCcEEEccCCcccccCChhHhhcccccceEECCCCcCcCccCC---CCCCCCCccEEeCC
Q 001612          649 FSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSV---TFPGNCGLHTLDLN  725 (1044)
Q Consensus       649 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~Ls  725 (1044)
                      |+|++|+++...+.+|..+..|++|.|++|+++ .+.+..+.+.++|++|||++|.+++.+.+   .|.++++|+.|+|.
T Consensus       322 LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~  400 (873)
T KOG4194|consen  322 LDLSSNRITRLDEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLT  400 (873)
T ss_pred             EeccccccccCChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeec
Confidence            888888888888888888888888888888887 56665555568888888888888877654   37778888888888


Q ss_pred             CCCCcccCcccccCCCCCcEEECCCCccccCCChhhhcCCCCcEEEccCCcc
Q 001612          726 GNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSF  777 (1044)
Q Consensus       726 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l  777 (1044)
                      +|++..+...+|.++..|+.|||.+|.+..+-|..|..+ .|+.|.+..-.|
T Consensus       401 gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf  451 (873)
T KOG4194|consen  401 GNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF  451 (873)
T ss_pred             CceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence            888886666788888888888888888888888888877 777777765443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.8e-34  Score=306.70  Aligned_cols=364  Identities=26%  Similarity=0.310  Sum_probs=314.0

Q ss_pred             CCceEEecCCCCCCCCCcccccCCCCCCEEECCCCCCCCCChHhhhCCCCCcEEEccCCCCCCCcChhhcCCCCCCEEEC
Q 001612          211 PKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDL  290 (1044)
Q Consensus       211 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  290 (1044)
                      +.-+.||+++|++...-+..|.++++|+++++..|.++ .+|...+...+|+.|+|.+|.|+..-.+++..++.|++|||
T Consensus        78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL  156 (873)
T KOG4194|consen   78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL  156 (873)
T ss_pred             cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence            56678999999999888888999999999999988775 46776666777999999999998777788899999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCcEEEccCCcCCccCcccccCCCCCCEEeccCccCCCCCchhhcCCCCCcEEeCcCCcccCC
Q 001612          291 SGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGP  370 (1044)
Q Consensus       291 s~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  370 (1044)
                      +.|.+.+...+.|..-.++++|+|++|+|+..-...|..+.+|.+|.|++|+++...+..|.++++|+.|+|..|++.-.
T Consensus       157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv  236 (873)
T KOG4194|consen  157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV  236 (873)
T ss_pred             hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence            99999999999999989999999999999988888899999999999999999977778899999999999999988643


Q ss_pred             -CCcccCCCcccEEEccCCCCCCCCCchhhhcCCCccEEEeecCcCCCCCCcccCCCcccceeecCCcccCCCCCccccc
Q 001612          371 -IPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNA  449 (1044)
Q Consensus       371 -~~~~~~~~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  449 (1044)
                       .-.+.++++|+.|.+..|.+. .+.+..|..+.++++|+|+.|+++..-.+++.++++|+.|++++|.+...-++. ..
T Consensus       237 e~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~-Ws  314 (873)
T KOG4194|consen  237 EGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS-WS  314 (873)
T ss_pred             hhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecch-hh
Confidence             334566689999999999987 566667999999999999999999888889999999999999999988654432 22


Q ss_pred             CCCCCCEEEcCCCcCCCCCCchhhcCCCccEEEecCCcccCccchHHHHhCCCCCeEeCCCceeeeecCC---CCCCCcc
Q 001612          450 SSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGS---DSSFPSQ  526 (1044)
Q Consensus       450 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~~~  526 (1044)
                      .+++|++|+++.|+++..-+..|..+..|++|+|++|.+. .+...+|..+++|++|||+.|.+......   .+...++
T Consensus       315 ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~  393 (873)
T KOG4194|consen  315 FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPS  393 (873)
T ss_pred             hcccceeEeccccccccCChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchh
Confidence            4789999999999999888889999999999999999998 78888999999999999999998743322   2556789


Q ss_pred             ccEEEccCCCCcCCCC--ccCCCCCcEEECCCCcCCCCCChhHhhhcccccceeecc
Q 001612          527 VRTLRLASCKLRVIPN--LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLS  581 (1044)
Q Consensus       527 L~~L~L~~n~l~~l~~--l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls  581 (1044)
                      |+.|.+.+|++..+|.  +..+..|++|||.+|.|...-|+.|..+   .|++|.+.
T Consensus       394 LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m---~Lk~Lv~n  447 (873)
T KOG4194|consen  394 LRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM---ELKELVMN  447 (873)
T ss_pred             hhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc---hhhhhhhc
Confidence            9999999999999997  9999999999999999998888877665   36666543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=2.4e-34  Score=325.12  Aligned_cols=506  Identities=28%  Similarity=0.384  Sum_probs=305.6

Q ss_pred             EEccCCCCCCCcChhhcCCCCCCEEECCCCCCCCCCCCCCCCCCCCcEEEccCCcCCccCcccccCCCCCCEEeccCccC
Q 001612          264 LRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYF  343 (1044)
Q Consensus       264 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  343 (1044)
                      ++++.+.+. .+|..+..-..++.|+++.|.....+.+...+.-+|+.|++++|++. ..|..+..+.+|+.|+++.|.+
T Consensus         3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i   80 (1081)
T KOG0618|consen    3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYI   80 (1081)
T ss_pred             cccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhH
Confidence            455555555 56666655555777777777665555444444555777777777766 4566667777777777777777


Q ss_pred             CCCCchhhcCCCCCcEEeCcCCcccCCCCcccCCCcccEEEccCCCCCCCCCchhhhcCCCccEEEeecCcCCCCCCccc
Q 001612          344 DGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSL  423 (1044)
Q Consensus       344 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~l  423 (1044)
                      . ..|.+..++.+|+++.|.+|.+.                        ..|.. +..+++|++|+++.|.+. .+|..+
T Consensus        81 ~-~vp~s~~~~~~l~~lnL~~n~l~------------------------~lP~~-~~~lknl~~LdlS~N~f~-~~Pl~i  133 (1081)
T KOG0618|consen   81 R-SVPSSCSNMRNLQYLNLKNNRLQ------------------------SLPAS-ISELKNLQYLDLSFNHFG-PIPLVI  133 (1081)
T ss_pred             h-hCchhhhhhhcchhheeccchhh------------------------cCchh-HHhhhcccccccchhccC-CCchhH
Confidence            6 55666777777777777766655                        33333 555666666666666655 455556


Q ss_pred             CCCcccceeecCCcccCCCCCcccccCCCCCCEEEcCCCcCCCCCCchhhcCCCccEEEecCCcccCccchHHHHhCCCC
Q 001612          424 FSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNL  503 (1044)
Q Consensus       424 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L  503 (1044)
                      ..++.+..+..++|......+.      ..++.+++..|.+.+.++..+..+..  .|+|++|.+. ..   .+..+.+|
T Consensus       134 ~~lt~~~~~~~s~N~~~~~lg~------~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~---dls~~~~l  201 (1081)
T KOG0618|consen  134 EVLTAEEELAASNNEKIQRLGQ------TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VL---DLSNLANL  201 (1081)
T ss_pred             HhhhHHHHHhhhcchhhhhhcc------ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hh---hhhhccch
Confidence            6666666666666622111111      12666777777777777777776665  6888888875 22   36677888


Q ss_pred             CeEeCCCceeeeecCCCCCCCccccEEEccCCCCcCCCCccCCCCCcEEECCCCcCCCCCChhHhhhcccccceeecccc
Q 001612          504 AKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHN  583 (1044)
Q Consensus       504 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~N  583 (1044)
                      +.+....|++..+....    ++++.|+..+|.++.+..-..-.+|+.+|++.|+++ .+|+|+..+             
T Consensus       202 ~~l~c~rn~ls~l~~~g----~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~-------------  263 (1081)
T KOG0618|consen  202 EVLHCERNQLSELEISG----PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGAC-------------  263 (1081)
T ss_pred             hhhhhhhcccceEEecC----cchheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHhc-------------
Confidence            88888888776544321    256666666666653332223345666666666666 445665554             


Q ss_pred             cccCccCCcccCCCCCCceEEcCCCcccCCCCCCCCCCcEEEccCCcCCcCCChhhhhccccceEEeccCCcccCcCccc
Q 001612          584 LLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPET  663 (1044)
Q Consensus       584 ~l~~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~  663 (1044)
                                    .+|+.++..+|+++                      .+|..+.. ..+|+.+.+..|.+. .+|..
T Consensus       264 --------------~nle~l~~n~N~l~----------------------~lp~ri~~-~~~L~~l~~~~nel~-yip~~  305 (1081)
T KOG0618|consen  264 --------------ANLEALNANHNRLV----------------------ALPLRISR-ITSLVSLSAAYNELE-YIPPF  305 (1081)
T ss_pred             --------------ccceEecccchhHH----------------------hhHHHHhh-hhhHHHHHhhhhhhh-hCCCc
Confidence                          34444444444442                      23333332 455555556666655 45555


Q ss_pred             hhccCCCcEEEccCCcccccCChhHhhccc-ccceEECCCCcCcCccCCCCCCCCCccEEeCCCCCCcccCcccccCCCC
Q 001612          664 LCRAKYLLVLDLSKNKLSGKMPTCLIKMSE-ILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRN  742 (1044)
Q Consensus       664 l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  742 (1044)
                      ....++|+.|||..|++. ..|+.+..... +|+.|+.+.|++.......=...+.|+.|++.+|.++...-..+.+...
T Consensus       306 le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~h  384 (1081)
T KOG0618|consen  306 LEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKH  384 (1081)
T ss_pred             ccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccc
Confidence            666777888888888886 66665544332 3666777777766544222233456777777777777666556667777


Q ss_pred             CcEEECCCCccccCCChhhhcCCCCcEEEccCCccccCCCCCCCCCCCCcccEEEcCCCcCCCcCChhhHhhhhhcccch
Q 001612          743 LVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDE  822 (1044)
Q Consensus       743 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~~~~~~~~~  822 (1044)
                      |++|+|++|++.......+.++..|+.|+|++|+++.                           +|. +..         
T Consensus       385 LKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~---------------------------Lp~-tva---------  427 (1081)
T KOG0618|consen  385 LKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT---------------------------LPD-TVA---------  427 (1081)
T ss_pred             eeeeeecccccccCCHHHHhchHHhHHHhcccchhhh---------------------------hhH-HHH---------
Confidence            7777777777764444455666666666666665542                           221 111         


Q ss_pred             hhhcccccccccccccccccccccceEEeecCchhhHhhhcCcceEEEccCCcccccCCcccCCCCCCCEEeCCCCCCcC
Q 001612          823 DEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTG  902 (1044)
Q Consensus       823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~~~~L~~L~~L~Ls~N~l~g  902 (1044)
                                                             .+..|++|..-+|.+. ..| ++.+++.|+.+|+|.|+++-
T Consensus       428 ---------------------------------------~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~  466 (1081)
T KOG0618|consen  428 ---------------------------------------NLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSE  466 (1081)
T ss_pred             ---------------------------------------hhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhh
Confidence                                                   1333444555566665 456 67888888888888888874


Q ss_pred             -CCcccccCcCCCCEEeCCCCccccccCccccCCCCCcEEECcCC
Q 001612          903 -PIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHN  946 (1044)
Q Consensus       903 -~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N  946 (1044)
                       .+|..... ++|++|||++|.-.-.--..|..+.++...++.-|
T Consensus       467 ~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  467 VTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             hhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence             33443322 78888888888643233334555555555555555

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=1.5e-33  Score=318.78  Aligned_cols=483  Identities=30%  Similarity=0.324  Sum_probs=299.7

Q ss_pred             ecCCCCCCCCCcccccCCCCCCEEECCCCCCCCCChHhhhCCCCCcEEEccCCCCCCCcChhhcCCCCCCEEECCCCCCC
Q 001612          217 SLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLL  296 (1044)
Q Consensus       217 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~  296 (1044)
                      |.+.+.+. .+|..+-.-..++.|++..|.+....-++..+.-+|+.|++++|.+. .+|..+..+.+|+.|+++.|.+.
T Consensus         4 d~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~   81 (1081)
T KOG0618|consen    4 DASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR   81 (1081)
T ss_pred             ccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh
Confidence            44444443 34444444444677777777655544455555556777777777775 67777777777777777777665


Q ss_pred             CCCCCCCCCCCCCcEEEccCCcCCccCcccccCCCCCCEEeccCccCCCCCchhhcCCCCCcEEeCcCCcccCCCCcccC
Q 001612          297 QGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHM  376 (1044)
Q Consensus       297 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~  376 (1044)
                      ..+ .....+.+|+++.|.+|.+. ..|..+..+++|+.|+++.|.+. .+|..+..++.++.++.++|......+.   
T Consensus        82 ~vp-~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~---  155 (1081)
T KOG0618|consen   82 SVP-SSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQ---  155 (1081)
T ss_pred             hCc-hhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhcc---
Confidence            444 34445777888888777776 67888888888888888888887 6787888888888888888822212221   


Q ss_pred             CCcccEEEccCCCCCCCCCchhhhcCCCccEEEeecCcCCCCCCcccCCCcccceeecCCcccCCCCCcccccCCCCCCE
Q 001612          377 SKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDT  456 (1044)
Q Consensus       377 ~~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~  456 (1044)
                       ..++.+++..|.+.+.++.+ +.+++.  .|+|.+|.+.   ...+..++.|+.+....|++....     ...++++.
T Consensus       156 -~~ik~~~l~~n~l~~~~~~~-i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~-----~~g~~l~~  223 (1081)
T KOG0618|consen  156 -TSIKKLDLRLNVLGGSFLID-IYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE-----ISGPSLTA  223 (1081)
T ss_pred             -ccchhhhhhhhhcccchhcc-hhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEE-----ecCcchhe
Confidence             23777777777777666655 555555  5888888776   234566777888877777765321     12467888


Q ss_pred             EEcCCCcCCCCCCchhhcCCCccEEEecCCcccCccchHHHHhCCCCCeEeCCCceeeeecCCCCCCCccccEEEccCCC
Q 001612          457 IDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCK  536 (1044)
Q Consensus       457 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~  536 (1044)
                      |+.++|.++...+.  ..-.+|+.++++.|+++ .+| +++..+.+|+.++..+|+++.++...+ ...+|+.|.+..|.
T Consensus       224 L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~-~~~~L~~l~~~~ne  298 (1081)
T KOG0618|consen  224 LYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLP-EWIGACANLEALNANHNRLVALPLRIS-RITSLVSLSAAYNE  298 (1081)
T ss_pred             eeeccCcceeeccc--cccccceeeecchhhhh-cch-HHHHhcccceEecccchhHHhhHHHHh-hhhhHHHHHhhhhh
Confidence            88888877732221  12357888888888887 566 678888888888888888865544432 33478889999999


Q ss_pred             CcCCCC-ccCCCCCcEEECCCCcCCCCCChhHhhhcccccceeecccccccCccCCcccCCCCCCceEEcCCCcccCCCC
Q 001612          537 LRVIPN-LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIP  615 (1044)
Q Consensus       537 l~~l~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~l~~n~l~~~~~  615 (1044)
                      +..+|+ ....++|+.||+..|.+. ..|+.+......+++.|+.+.|++...+... =.                    
T Consensus       299 l~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~-e~--------------------  356 (1081)
T KOG0618|consen  299 LEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYE-EN--------------------  356 (1081)
T ss_pred             hhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccccccccc-ch--------------------
Confidence            999988 667999999999999997 6777666555555677777777666543110 01                    


Q ss_pred             CCCCCCcEEEccCCcCCcCCChhhhhccccceEEeccCCcccCcCccchhccCCCcEEEccCCcccccCChhHhhccccc
Q 001612          616 YPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEIL  695 (1044)
Q Consensus       616 ~~~~~l~~l~ls~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L  695 (1044)
                                                ..+.|+.|++.+|.++...-..+-+...|+.|+|++|++. .+|.....-.+.|
T Consensus       357 --------------------------~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~L  409 (1081)
T KOG0618|consen  357 --------------------------NHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEEL  409 (1081)
T ss_pred             --------------------------hhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHh
Confidence                                      1233444444444444444444444455555555555554 4444333333445


Q ss_pred             ceEECCCCcCcCccCCCCCCCCCccEEeCCCCCCcccCcccccCCCCCcEEECCCCccccCCChhhhcCCCCcEEEccCC
Q 001612          696 GVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSN  775 (1044)
Q Consensus       696 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N  775 (1044)
                      ++|+||+|+++.+ |+....+..|++|...+|++. ..| .+..++.|+.+|+|.|+++...-..-..-++|++||+++|
T Consensus       410 eeL~LSGNkL~~L-p~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN  486 (1081)
T KOG0618|consen  410 EELNLSGNKLTTL-PDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGN  486 (1081)
T ss_pred             HHHhcccchhhhh-hHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCC
Confidence            5555555555432 244444555555555555554 344 4555555555555555554222111111145555555555


Q ss_pred             c
Q 001612          776 S  776 (1044)
Q Consensus       776 ~  776 (1044)
                      .
T Consensus       487 ~  487 (1081)
T KOG0618|consen  487 T  487 (1081)
T ss_pred             c
Confidence            3

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=8.6e-32  Score=289.77  Aligned_cols=369  Identities=28%  Similarity=0.385  Sum_probs=288.5

Q ss_pred             ccCCCCCcccCCCCCCCCCCCCCcCCCCCCCCEEEcCCCCCCCCCCccccCCCCCcEEecCCCCCCCCCcccCCCChhHH
Q 001612           99 FSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGL  178 (1044)
Q Consensus        99 ~~l~~L~~LdLs~n~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~l~~~  178 (1044)
                      +-++..|-.|+++|.|+|..+|..+..++.++.|.|....+. .+|..++.|.+|+||.+++|++..         +.+-
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~---------vhGE   73 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLIS---------VHGE   73 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHh---------hhhh
Confidence            345667788888899988889999999999999999998887 899999999999999999988633         3455


Q ss_pred             hhccccCceecCCCccCCCchhhhHHHHhccCCCceEEecCCCCCCCCCcccccCCCCCCEEECCCCCCCCCChHhhhCC
Q 001612          179 LQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADF  258 (1044)
Q Consensus       179 l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l  258 (1044)
                      +..++.|+.+.+..|++...++.  ..+.++ ..|+.||||+|++.. .|..+..-+++-+|+||+|+|..+....|.++
T Consensus        74 Ls~Lp~LRsv~~R~N~LKnsGiP--~diF~l-~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~IetIPn~lfinL  149 (1255)
T KOG0444|consen   74 LSDLPRLRSVIVRDNNLKNSGIP--TDIFRL-KDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNNIETIPNSLFINL  149 (1255)
T ss_pred             hccchhhHHHhhhccccccCCCC--chhccc-ccceeeecchhhhhh-cchhhhhhcCcEEEEcccCccccCCchHHHhh
Confidence            77888899999998887655432  234444 889999999999984 67888899999999999999988777778899


Q ss_pred             CCCcEEEccCCCCCCCcChhhcCCCCCCEEECCCCCCCCCCCCCCCCCCCCcEEEccCCcCC-ccCcccccCCCCCCEEe
Q 001612          259 FNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFS-GVLPDSIGNLKNLSRLD  337 (1044)
Q Consensus       259 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~  337 (1044)
                      +.|-.|+|++|++. .+|+.+..+.+|++|+|++|.+....+..+..+++|+.|.+++.+-+ ..+|.++..+.+|..+|
T Consensus       150 tDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvD  228 (1255)
T KOG0444|consen  150 TDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVD  228 (1255)
T ss_pred             HhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcc
Confidence            99999999999997 88999999999999999999988888888888999999999997655 46888999999999999


Q ss_pred             ccCccCCCCCchhhcCCCCCcEEeCcCCcccCCCCcccCCCcccEEEccCCCCCCCCCchhhhcCCCccEEEeecCcCC-
Q 001612          338 LALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLN-  416 (1044)
Q Consensus       338 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~-  416 (1044)
                      ++.|.+. ..|+.+.++++|+.|+|++|+++..--....-.+|++|+++.|+++ .+|.. +..+++|+.|.+.+|+++ 
T Consensus       229 lS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~a-vcKL~kL~kLy~n~NkL~F  305 (1255)
T KOG0444|consen  229 LSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDA-VCKLTKLTKLYANNNKLTF  305 (1255)
T ss_pred             ccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHH-HhhhHHHHHHHhccCcccc
Confidence            9999998 7899999999999999999998754333223366777777777775 55554 667777777777777654 


Q ss_pred             CCCCcccCCCcccceeecCCcccCCCCCcccccCCCCCCEEEcCCCcCCCCCCchhhcCCCccEEEecCCcc
Q 001612          417 GSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKL  488 (1044)
Q Consensus       417 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l  488 (1044)
                      .-+|+.++.+.+|+.+..++|.+. .+|+... .|..|+.|.++.|.+. .+|..+.-++.|+.|++..|.-
T Consensus       306 eGiPSGIGKL~~Levf~aanN~LE-lVPEglc-RC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn  374 (1255)
T KOG0444|consen  306 EGIPSGIGKLIQLEVFHAANNKLE-LVPEGLC-RCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN  374 (1255)
T ss_pred             cCCccchhhhhhhHHHHhhccccc-cCchhhh-hhHHHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence            245667777777777766666654 2333222 3555666666666555 5566666566666666666543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.95  E-value=7.5e-30  Score=274.88  Aligned_cols=363  Identities=28%  Similarity=0.381  Sum_probs=211.5

Q ss_pred             CCCCcEEEccCCcCC-ccCcccccCCCCCCEEeccCccCCCCCchhhcCCCCCcEEeCcCCcccCCCCcccCCCcccEEE
Q 001612          306 NSSLRTLMLSNTNFS-GVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLD  384 (1044)
Q Consensus       306 l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~  384 (1044)
                      ++-.+-.|+++|.++ +..|.....+++++.|.|...++. .+|+.++.+.+|++|.+++|++......+..++.|+.+.
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~   84 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVI   84 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHh
Confidence            344566777788887 467888888888888888888776 678888888888888888888776555555566777777


Q ss_pred             ccCCCCCC-CCCchhhhcCCCccEEEeecCcCCCCCCcccCCCcccceeecCCcccCCCCCcccccCCCCCCEEEcCCCc
Q 001612          385 LSYNALPG-AISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNR  463 (1044)
Q Consensus       385 L~~n~l~~-~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~  463 (1044)
                      +.+|++.. .||.+ +-.+..|+.|||++|++. ..|..+..-+++-.|+|++|++.. ||.-.+..+..|-.||+++|.
T Consensus        85 ~R~N~LKnsGiP~d-iF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Iet-IPn~lfinLtDLLfLDLS~Nr  161 (1255)
T KOG0444|consen   85 VRDNNLKNSGIPTD-IFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIET-IPNSLFINLTDLLFLDLSNNR  161 (1255)
T ss_pred             hhccccccCCCCch-hcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCcccc-CCchHHHhhHhHhhhccccch
Confidence            77776643 34444 566677777777777776 566666666666666666666653 343334445556666666666


Q ss_pred             CCCCCCchhhcCCCccEEEecCCcccCccchHHHHhCCCCCeEeCCCceeeeecCCCCCCCccccEEEccCCCCc--CCC
Q 001612          464 LEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLR--VIP  541 (1044)
Q Consensus       464 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~--~l~  541 (1044)
                      +. .+|..+..+..|++|.|++|.+. ...   +..+|+                     ..+|+.|.+++.+-+  .+|
T Consensus       162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~-hfQ---LrQLPs---------------------mtsL~vLhms~TqRTl~N~P  215 (1255)
T KOG0444|consen  162 LE-MLPPQIRRLSMLQTLKLSNNPLN-HFQ---LRQLPS---------------------MTSLSVLHMSNTQRTLDNIP  215 (1255)
T ss_pred             hh-hcCHHHHHHhhhhhhhcCCChhh-HHH---HhcCcc---------------------chhhhhhhcccccchhhcCC
Confidence            66 55666666666666666666654 222   222222                     223444444444322  455


Q ss_pred             C-ccCCCCCcEEECCCCcCCCCCChhHhhhcccccceeecccccccCccCCcccCCCCCCceEEcCCCcccCCCCCCCCC
Q 001612          542 N-LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPK  620 (1044)
Q Consensus       542 ~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  620 (1044)
                      . +..+.+|..+|+|.|.+. .+|+.+..+.+  |+.|++|+|+++.+...  ...                        
T Consensus       216 tsld~l~NL~dvDlS~N~Lp-~vPecly~l~~--LrrLNLS~N~iteL~~~--~~~------------------------  266 (1255)
T KOG0444|consen  216 TSLDDLHNLRDVDLSENNLP-IVPECLYKLRN--LRRLNLSGNKITELNMT--EGE------------------------  266 (1255)
T ss_pred             CchhhhhhhhhccccccCCC-cchHHHhhhhh--hheeccCcCceeeeecc--HHH------------------------
Confidence            5 677778888888888876 67777666543  55566665555544211  000                        


Q ss_pred             CcEEEccCCcCCcCCChhhhhccccceEEeccCCcccCcCccchhccCCCcEEEccCCccc-ccCChhHhhcccccceEE
Q 001612          621 AVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLS-GKMPTCLIKMSEILGVLN  699 (1044)
Q Consensus       621 l~~l~ls~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~-~~ip~~~~~~~~~L~~L~  699 (1044)
                                            ..+++.|+++.|+++ ..|..+|.++.|+.|.+.+|+++ .-||..++.+ ..|+++.
T Consensus       267 ----------------------W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL-~~Levf~  322 (1255)
T KOG0444|consen  267 ----------------------WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL-IQLEVFH  322 (1255)
T ss_pred             ----------------------Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhh-hhhHHHH
Confidence                                  122333333333333 34555555555555555555543 1245555544 4455555


Q ss_pred             CCCCcCcCccCCCCCCCCCccEEeCCCCCCcccCcccccCCCCCcEEECCCCcc
Q 001612          700 LRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKI  753 (1044)
Q Consensus       700 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  753 (1044)
                      .++|.+. ..|+.++.+..|+.|.|++|++. .+|+++.-++.|+.||+..|+-
T Consensus       323 aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn  374 (1255)
T KOG0444|consen  323 AANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN  374 (1255)
T ss_pred             hhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence            4444443 34444444455555555555444 3444444445555555554443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.88  E-value=8.4e-25  Score=225.60  Aligned_cols=420  Identities=23%  Similarity=0.231  Sum_probs=253.3

Q ss_pred             CccEEEecCCcccCccchHHHHhCCCCCeEeCCCceeeeecCCCCCCCccccEEEccC-CCCcCCCC--ccCCCCCcEEE
Q 001612          477 NLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLAS-CKLRVIPN--LKNQSKLFNLD  553 (1044)
Q Consensus       477 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~-n~l~~l~~--l~~l~~L~~L~  553 (1044)
                      .-..++|..|+|+ .+|..+|+.+++|+.|+|++|.|+.+...++....++.+|-+.+ |+|+.+|.  |.++.+++.|.
T Consensus        68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            4556677777776 66777777777777777777777777766666666666665555 78888886  88889999999


Q ss_pred             CCCCcCCCCCChhHhhhcccccceeecccccccCccCCcccCCCCCCceEEcCCCcccCCCCCCCCCCcEEEccCCcCCc
Q 001612          554 LSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTS  633 (1044)
Q Consensus       554 Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~ls~n~~~~  633 (1044)
                      +.-|++.....+.++.+..  +..|.+.+|.+..+.. ..+..+..++.+.+..|++.....  .+.+.. ++..+.+  
T Consensus       147 lNan~i~Cir~~al~dL~~--l~lLslyDn~~q~i~~-~tf~~l~~i~tlhlA~np~icdCn--L~wla~-~~a~~~i--  218 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPS--LSLLSLYDNKIQSICK-GTFQGLAAIKTLHLAQNPFICDCN--LPWLAD-DLAMNPI--  218 (498)
T ss_pred             cChhhhcchhHHHHHHhhh--cchhcccchhhhhhcc-ccccchhccchHhhhcCccccccc--cchhhh-HHhhchh--
Confidence            9999998777788888765  7888888888887743 246777888999998888643211  011100 0000100  


Q ss_pred             CCChhhhhccccceEEeccCCcccCcCccchhcc-CCCcEEEccCCcccccCChhHhhcccccceEECCCCcCcCccCCC
Q 001612          634 SIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRA-KYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVT  712 (1044)
Q Consensus       634 ~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~  712 (1044)
                          ..+ ......-..+.+.++..+-+..|... .++..--.+.+...+..|..-+..+++|++|+|++|+++++-+.+
T Consensus       219 ----ets-garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a  293 (498)
T KOG4237|consen  219 ----ETS-GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA  293 (498)
T ss_pred             ----hcc-cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhh
Confidence                000 01112222334444443333333221 222221223333444555433333478888888888888888888


Q ss_pred             CCCCCCccEEeCCCCCCcccCcccccCCCCCcEEECCCCccccCCChhhhcCCCCcEEEccCCccccCCCCCCCCCCCCc
Q 001612          713 FPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPK  792 (1044)
Q Consensus       713 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i~~~~~~~~l~~  792 (1044)
                      |.+...+++|+|..|++.......|.++..|++|+|.+|+|+..-|..|..+.+|..|.|-+|+|.              
T Consensus       294 Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~--------------  359 (498)
T KOG4237|consen  294 FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN--------------  359 (498)
T ss_pred             hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc--------------
Confidence            888888888888888887766777888888888888888888777777777777777777666653              


Q ss_pred             ccEEEcCCCcCCCcCChhhHhhhhhcccchh--hhcc--cccccccccccccccccc--cceEEeecCchhhHhhhcCcc
Q 001612          793 LQIVDLASNNFGGRVPQKCITSWKAMMSDED--EAQS--NFKDVHFEFLKIADFYYQ--DAVTVTSKGLEMELVKILSIF  866 (1044)
Q Consensus       793 L~~Ldls~N~l~g~ip~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~l  866 (1044)
                                  ...--.|++.|..-.....  ..+.  .++.+++.-....++...  +.......+...   ...+-+
T Consensus       360 ------------CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP---~~c~c~  424 (498)
T KOG4237|consen  360 ------------CNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCP---PPCTCL  424 (498)
T ss_pred             ------------CccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCC---CCcchh
Confidence                        3333356666643322111  1111  011111111111110000  000000000000   011222


Q ss_pred             -eEEEccCCcccccCCcccCCCCCCCEEeCCCCCCcCCCcccccCcCCCCEEeCCCCccccccCccccCCCCCcEEECcC
Q 001612          867 -TSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSH  945 (1044)
Q Consensus       867 -~~LdLs~N~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~  945 (1044)
                       ++...|++.++ .+|..|.  ..-.+|++.+|.++ .+|.+  .+..| .+|+|+|+++..--..|.+++.|.+|-+||
T Consensus       425 ~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsy  497 (498)
T KOG4237|consen  425 DTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSY  497 (498)
T ss_pred             hhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEec
Confidence             22334555554 5565554  24577889999998 78887  67788 899999999877778899999999999998


Q ss_pred             C
Q 001612          946 N  946 (1044)
Q Consensus       946 N  946 (1044)
                      |
T Consensus       498 n  498 (498)
T KOG4237|consen  498 N  498 (498)
T ss_pred             C
Confidence            7

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.87  E-value=4.9e-24  Score=220.00  Aligned_cols=278  Identities=19%  Similarity=0.169  Sum_probs=178.0

Q ss_pred             CCCceEEecCCCCCCCCCcccccCCCCCCEEECCCCCCCCCChHhhhCCCCCcEEEccC-CCCCCCcChhhcCCCCCCEE
Q 001612          210 VPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSH-SRLNGTFPEKILQVHTLETL  288 (1044)
Q Consensus       210 ~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L  288 (1044)
                      ++.-..++|..|+|+.+.+.+|+.+++|+.|||++|.|+.+-|++|.++++|.+|-+.+ |+|+......|+.+..|+.|
T Consensus        66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL  145 (498)
T ss_pred             CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence            36778888888888888888888888888888888888888888888888887777766 77775555677888888888


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCcEEEccCCcCCccCcccccCCCCCCEEeccCccCCC------------CCchhhcCCCC
Q 001612          289 DLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDG------------SIPTSLANLTQ  356 (1044)
Q Consensus       289 ~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~------------~~p~~l~~l~~  356 (1044)
                      .+.-|++.......|..+++|..|.+.+|.+...-...|..+..++++.+..|.+..            ..|..++...-
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc  225 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC  225 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence            888777766666677778888888888887774444477777888888877776321            11222222222


Q ss_pred             CcEEeCcCCcccCCCCcccCC--CcccEEEccCCCCCCCCCchhhhcCCCccEEEeecCcCCCCCCcccCCCcccceeec
Q 001612          357 LVYLDLSFNKFVGPIPSLHMS--KNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQL  434 (1044)
Q Consensus       357 L~~L~L~~n~l~~~~~~~~~~--~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  434 (1044)
                      ..-..+.+.++...-+.-+..  +.+..=-.+.+...+..|...|..+++|+.|++++|++++.-+.+|.....+++|.|
T Consensus       226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L  305 (498)
T KOG4237|consen  226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL  305 (498)
T ss_pred             cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence            222223333322211111111  122111223344455667777888888888888888888888888888888888888


Q ss_pred             CCcccCCCCCcccccCCCCCCEEEcCCCcCCCCCCchhhcCCCccEEEecCCcc
Q 001612          435 AENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKL  488 (1044)
Q Consensus       435 ~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l  488 (1044)
                      ..|++.. +....+..++.|+.|++.+|+|+...|..|..+..|.+|++-.|.+
T Consensus       306 ~~N~l~~-v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  306 TRNKLEF-VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             CcchHHH-HHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence            7777652 2222233344455555555555544444444444455555444443

>PLN03210 Resistant to P

Probab=99.85  E-value=5.7e-20  Score=235.67  Aligned_cols=340  Identities=19%  Similarity=0.228  Sum_probs=207.2

Q ss_pred             cchHHHHhCCCCCeEeCCCceee-------eecCCCCCCCccccEEEccCCCCcCCCCccCCCCCcEEECCCCcCCCCCC
Q 001612          492 VQLAAIQRLHNLAKLELSYNNLT-------VNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIP  564 (1044)
Q Consensus       492 ~~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p  564 (1044)
                      +...+|.++++|+.|.+..+...       ..+......+.+|+.|.+.++.++.+|.--...+|+.|++++|++. .++
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~-~L~  627 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLE-KLW  627 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccc-ccc
Confidence            34455777777777777554321       1122223345567777777777777776335567777777777765 344


Q ss_pred             hhHhhhcccccceeeccccc-ccCccCCcccCCCCCCceEEcCCCcccCCCCCCCCCCcEEEccCCcCCcCCChhhhhcc
Q 001612          565 NWVWEIGNVSLQYLNLSHNL-LSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFV  643 (1044)
Q Consensus       565 ~~~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~~~  643 (1044)
                      ..+..+  .+|+.|+++++. +..++   .+..+++|+.|++++|.                     ....+|..+.. +
T Consensus       628 ~~~~~l--~~Lk~L~Ls~~~~l~~ip---~ls~l~~Le~L~L~~c~---------------------~L~~lp~si~~-L  680 (1153)
T PLN03210        628 DGVHSL--TGLRNIDLRGSKNLKEIP---DLSMATNLETLKLSDCS---------------------SLVELPSSIQY-L  680 (1153)
T ss_pred             cccccC--CCCCEEECCCCCCcCcCC---ccccCCcccEEEecCCC---------------------Cccccchhhhc-c
Confidence            333222  235555555432 22222   13334455555555444                     33345554443 5


Q ss_pred             ccceEEeccCCcccCcCccchhccCCCcEEEccCCcccccCChhHhhcccccceEECCCCcCcCccCCCCCCCCCccEEe
Q 001612          644 SFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLD  723 (1044)
Q Consensus       644 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  723 (1044)
                      ++|+.|++++|...+.+|..+ ++++|+.|++++|...+.+|..    ..+|+.|++++|.+.. +|..+ .+++|++|+
T Consensus       681 ~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~  753 (1153)
T PLN03210        681 NKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIEE-FPSNL-RLENLDELI  753 (1153)
T ss_pred             CCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCcccc-ccccc-ccccccccc
Confidence            666666666665545555544 5667777777776654455532    2567777777777653 33333 456677777


Q ss_pred             CCCCCC-------cccCcccccCCCCCcEEECCCCccccCCChhhhcCCCCcEEEccCCccccCCCCCCCCCCCCcccEE
Q 001612          724 LNGNQL-------GGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIV  796 (1044)
Q Consensus       724 Ls~N~l-------~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i~~~~~~~~l~~L~~L  796 (1044)
                      +.++..       ....|..+..+++|+.|++++|+..+.+|.+++++++|+.|++++|...+.+  |... .+++|+.|
T Consensus       754 l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L--P~~~-~L~sL~~L  830 (1153)
T PLN03210        754 LCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL--PTGI-NLESLESL  830 (1153)
T ss_pred             ccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee--CCCC-CccccCEE
Confidence            765332       1112222334567888888888777778888888888888888877655555  4433 57788888


Q ss_pred             EcCCCcCCCcCChhhHhhhhhcccchhhhcccccccccccccccccccccceEEeecCchhhHhhhcCcceEEEccCCcc
Q 001612          797 DLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNF  876 (1044)
Q Consensus       797 dls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l  876 (1044)
                      ++++|.....+|.                                                    ..++++.|+|++|.+
T Consensus       831 ~Ls~c~~L~~~p~----------------------------------------------------~~~nL~~L~Ls~n~i  858 (1153)
T PLN03210        831 DLSGCSRLRTFPD----------------------------------------------------ISTNISDLNLSRTGI  858 (1153)
T ss_pred             ECCCCCccccccc----------------------------------------------------cccccCEeECCCCCC
Confidence            8887755444431                                                    124577788888888


Q ss_pred             cccCCcccCCCCCCCEEeCCC-CCCcCCCcccccCcCCCCEEeCCCCc
Q 001612          877 DGPIPEEIGRLKSLHGLNLSQ-NALTGPIPSAIGNLQQLESLDLSMNH  923 (1044)
Q Consensus       877 ~g~ip~~~~~L~~L~~L~Ls~-N~l~g~ip~~~~~l~~L~~L~ls~N~  923 (1044)
                      + .+|..++.+++|+.|++++ |++. .+|..+..++.|+.++++++.
T Consensus       859 ~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        859 E-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             c-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCc
Confidence            7 5788888888888888887 4455 577778888888888888764

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.85  E-value=7e-20  Score=234.88  Aligned_cols=316  Identities=22%  Similarity=0.261  Sum_probs=229.6

Q ss_pred             cccccCCCCCCEEECCCCC------CCCCChHhhhCCC-CCcEEEccCCCCCCCcChhhcCCCCCCEEECCCCCCCCCCC
Q 001612          228 HPSLAKLQSLSVIRLDQND------LLSPVPEFLADFF-NLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSL  300 (1044)
Q Consensus       228 ~~~l~~l~~L~~L~Ls~n~------~~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~  300 (1044)
                      +.+|.++++|+.|.+..+.      +...+|+.|..++ +|+.|.+.++.+. .+|..+ ...+|+.|+++++++... .
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~L-~  627 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEKL-W  627 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccccc-c
Confidence            4568889999999986653      2334666677665 5999999999886 778776 578999999999876543 2


Q ss_pred             CCCCCCCCCcEEEccCCcCCccCcccccCCCCCCEEeccCccCCCCCchhhcCCCCCcEEeCcCCcccCCCCcccCCCcc
Q 001612          301 PDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNL  380 (1044)
Q Consensus       301 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L  380 (1044)
                      ..+..+++|+.|+++++.....+|. ++.+++|++|++++|.....+|..++++++|+.|++++|...+.+|....+++|
T Consensus       628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL  706 (1153)
T PLN03210        628 DGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSL  706 (1153)
T ss_pred             cccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCC
Confidence            3456789999999998765556664 788999999999998877788999999999999999998766677766667899


Q ss_pred             cEEEccCCCCCCCCCchhhhcCCCccEEEeecCcCCCCCCcccCCCcccceeecCCcccCCC------CCcccccCCCCC
Q 001612          381 THLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGL------IPEFSNASSSAL  454 (1044)
Q Consensus       381 ~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~------~~~~~~~~~~~L  454 (1044)
                      +.|++++|...+.+|..    .++|+.|++++|.+. .+|..+ .+++|++|.+.++.....      ++.......++|
T Consensus       707 ~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL  780 (1153)
T PLN03210        707 YRLNLSGCSRLKSFPDI----STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL  780 (1153)
T ss_pred             CEEeCCCCCCccccccc----cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccc
Confidence            99999999766565542    468899999999886 566554 578888888876442211      111122234678


Q ss_pred             CEEEcCCCcCCCCCCchhhcCCCccEEEecCCcccCccchHHHHhCCCCCeEeCCCceeeeecCCCCCCCccccEEEccC
Q 001612          455 DTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLAS  534 (1044)
Q Consensus       455 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~  534 (1044)
                      +.|++++|...+.+|.+++++++|+.|++++|...+.+|...  ++++|+.|++++|.....   ....+.+|++|++++
T Consensus       781 ~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~--~L~sL~~L~Ls~c~~L~~---~p~~~~nL~~L~Ls~  855 (1153)
T PLN03210        781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI--NLESLESLDLSGCSRLRT---FPDISTNISDLNLSR  855 (1153)
T ss_pred             hheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC--CccccCEEECCCCCcccc---ccccccccCEeECCC
Confidence            888888887777888888888888888888876545666542  677788888877643210   112234566666666


Q ss_pred             CCCcCCCC-ccCCCCCcEEECCCCc
Q 001612          535 CKLRVIPN-LKNQSKLFNLDLSDNQ  558 (1044)
Q Consensus       535 n~l~~l~~-l~~l~~L~~L~Ls~n~  558 (1044)
                      |.++.+|. +..+++|+.|++++|.
T Consensus       856 n~i~~iP~si~~l~~L~~L~L~~C~  880 (1153)
T PLN03210        856 TGIEEVPWWIEKFSNLSFLDMNGCN  880 (1153)
T ss_pred             CCCccChHHHhcCCCCCEEECCCCC
Confidence            66666665 6666666666666643

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=9.2e-21  Score=224.15  Aligned_cols=54  Identities=20%  Similarity=0.309  Sum_probs=31.3

Q ss_pred             CCcEEECCCCcCCCCCChhHhhhcccccceeecccccccCccCCcccCCCCCCceEEcCCCccc
Q 001612          548 KLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQ  611 (1044)
Q Consensus       548 ~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~l~~n~l~  611 (1044)
                      .-..|++++|.++ .+|..+..    +++.|++++|+++.++..     .++|++|++++|+++
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~~----~L~~L~L~~N~Lt~LP~l-----p~~Lk~LdLs~N~Lt  255 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLPA----HITTLVIPDNNLTSLPAL-----PPELRTLEVSGNQLT  255 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchhc----CCCEEEccCCcCCCCCCC-----CCCCcEEEecCCccC
Confidence            4567788888777 56665432    366666666666655321     244555555555554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=2.4e-20  Score=220.70  Aligned_cols=266  Identities=27%  Similarity=0.336  Sum_probs=144.1

Q ss_pred             cceeecCCcccCCCCCcccccCCCCCCEEEcCCCcCCCCCCchhhcCCCccEEEecCCcccCccchHHHHhCCCCCeEeC
Q 001612          429 LQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLEL  508 (1044)
Q Consensus       429 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  508 (1044)
                      -..|+++++.++. +|....   ++|+.|++.+|+++ .+|..   .++|++|++++|+++ .+|.    ..++|+.|++
T Consensus       203 ~~~LdLs~~~Lts-LP~~l~---~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~L  269 (788)
T PRK15387        203 NAVLNVGESGLTT-LPDCLP---AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPV----LPPGLLELSI  269 (788)
T ss_pred             CcEEEcCCCCCCc-CCcchh---cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccC----cccccceeec
Confidence            4456666666653 332211   34566666666655 23431   345555555555555 3332    1234445555


Q ss_pred             CCceeeeecCCCCCCCccccEEEccCCCCcCCCCccCCCCCcEEECCCCcCCCCCChhHhhhcccccceeecccccccCc
Q 001612          509 SYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSL  588 (1044)
Q Consensus       509 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~l  588 (1044)
                      ++|.++.++.    .+.+|+.|++++|+++.+|..  .++                          |+.|++++|+++.+
T Consensus       270 s~N~L~~Lp~----lp~~L~~L~Ls~N~Lt~LP~~--p~~--------------------------L~~LdLS~N~L~~L  317 (788)
T PRK15387        270 FSNPLTHLPA----LPSGLCKLWIFGNQLTSLPVL--PPG--------------------------LQELSVSDNQLASL  317 (788)
T ss_pred             cCCchhhhhh----chhhcCEEECcCCcccccccc--ccc--------------------------cceeECCCCccccC
Confidence            5554443221    223344444444444444431  233                          44444444444443


Q ss_pred             cCCcccCCCCCCceEEcCCCcccCCCCCCCCCCcEEEccCCcCCcCCChhhhhccccceEEeccCCcccCcCccchhccC
Q 001612          589 QRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAK  668 (1044)
Q Consensus       589 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~  668 (1044)
                      +..     ..+|+.|++++|.+++ +|..+.+|+.|++++|++++ +|.    ....++.|++++|.+++ +|..   ..
T Consensus       318 p~l-----p~~L~~L~Ls~N~L~~-LP~lp~~Lq~LdLS~N~Ls~-LP~----lp~~L~~L~Ls~N~L~~-LP~l---~~  382 (788)
T PRK15387        318 PAL-----PSELCKLWAYNNQLTS-LPTLPSGLQELSVSDNQLAS-LPT----LPSELYKLWAYNNRLTS-LPAL---PS  382 (788)
T ss_pred             CCC-----cccccccccccCcccc-ccccccccceEecCCCccCC-CCC----CCcccceehhhcccccc-Cccc---cc
Confidence            211     0234555555555543 44444455566666665553 332    13456666677777664 4432   24


Q ss_pred             CCcEEEccCCcccccCChhHhhcccccceEECCCCcCcCccCCCCCCCCCccEEeCCCCCCcccCcccccCCCCCcEEEC
Q 001612          669 YLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDL  748 (1044)
Q Consensus       669 ~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  748 (1044)
                      +|+.|++++|+++ .+|..    .++|+.|++++|.+++ +|..   ..+|+.|++++|+++ .+|..+.++++|+.|+|
T Consensus       383 ~L~~LdLs~N~Lt-~LP~l----~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdL  452 (788)
T PRK15387        383 GLKELIVSGNRLT-SLPVL----PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  452 (788)
T ss_pred             ccceEEecCCccc-CCCCc----ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEEC
Confidence            5777778877777 45542    2567777888877775 3432   235777888888877 56777777888888888


Q ss_pred             CCCccccCCChhhhcC
Q 001612          749 GNNKIRDTFPWWLENI  764 (1044)
Q Consensus       749 s~N~l~~~~p~~l~~l  764 (1044)
                      ++|++++..|..+..+
T Consensus       453 s~N~Ls~~~~~~L~~l  468 (788)
T PRK15387        453 EGNPLSERTLQALREI  468 (788)
T ss_pred             CCCCCCchHHHHHHHH
Confidence            8888887777665443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.78  E-value=2.4e-18  Score=205.58  Aligned_cols=357  Identities=18%  Similarity=0.228  Sum_probs=205.4

Q ss_pred             cccCCChHHHHHHHHHHHhcCcCCCCCccccCC----CCCCCCCcccce----------------eEeCCCCCeEEEeCC
Q 001612           25 LVSGQCQSDQQSLLLQMKSSLVFNSSLSFRMVQ----WSQSNDCCTWSG----------------VDCDEAGRVIGLDLS   84 (1044)
Q Consensus        25 ~~~~~~~~~~~~~ll~~k~~~~~~~~~~~~l~~----W~~~~~~c~w~g----------------v~C~~~~~v~~L~L~   84 (1044)
                      +.+++-.++|.+.+++..+.+.+++    .+.+    |..++|.|.-+.                |.|.. +.|+.+..-
T Consensus        55 ~~~~~~~~~~~~~~~~~~~~l~~p~----~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~-~~vt~l~~~  129 (754)
T PRK15370         55 HPPETASPEEIKSKFECLRMLAFPA----YADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGGG-KSVTYTRVT  129 (754)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhcCCc----hhhccccccCCCCcccccCCcchhhheeeecCCceEEecCC-Ccccccccc
Confidence            3445556789999999999997643    3555    988889997666                67754 567777766


Q ss_pred             CCCccCccCCCCCcccCCCCCcccCC----CCCCCCCCCC---Cc-----CCCCCCCCEEEcCCCCCCCCCCccccCCCC
Q 001612           85 EESISAGIDNSSPLFSLKYLQSLNLA----FNMFNATEIP---SG-----LGSLTNLTNLNLSNAGFAGQIPIQVSGMTR  152 (1044)
Q Consensus        85 ~~~l~g~~~~~~~l~~l~~L~~LdLs----~n~~~~~~lp---~~-----l~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~  152 (1044)
                      +.........+...     -.|-..-    .+.-.+. -+   .+     -+-..+.+.|+++++.++ .+|..+.  +.
T Consensus       130 g~~~~~~~~~~~~~-----~~~~~~w~~w~~~~~~~~-~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~~Ip--~~  200 (754)
T PRK15370        130 ESEQASSASGSKDA-----VNYELIWSEWVKEAPAKE-AANREEAVQRMRDCLKNNKTELRLKILGLT-TIPACIP--EQ  200 (754)
T ss_pred             cccccccCCCCCCh-----hhHHHHHHHHHhcCCCCc-cccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCcccc--cC
Confidence            53322211100000     0000000    0000000 00   00     011134455555555554 3454442  34


Q ss_pred             CcEEecCCCCCCCCCcccCCCChhHHhhccccCceecCCCccCCCchhhhHHHHhccCCCceEEecCCCCCCCCCccccc
Q 001612          153 LVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLA  232 (1044)
Q Consensus       153 L~~L~ls~n~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  232 (1044)
                      |++|++++|++...|..         +  .++|++|++++|.++..+...       .+.|+.|++++|.+. .+|..+.
T Consensus       201 L~~L~Ls~N~LtsLP~~---------l--~~nL~~L~Ls~N~LtsLP~~l-------~~~L~~L~Ls~N~L~-~LP~~l~  261 (754)
T PRK15370        201 ITTLILDNNELKSLPEN---------L--QGNIKTLYANSNQLTSIPATL-------PDTIQEMELSINRIT-ELPERLP  261 (754)
T ss_pred             CcEEEecCCCCCcCChh---------h--ccCCCEEECCCCccccCChhh-------hccccEEECcCCccC-cCChhHh
Confidence            55555555555443311         1  135556666665555443211       145777777777766 3444443


Q ss_pred             CCCCCCEEECCCCCCCCCChHhhhCCCCCcEEEccCCCCCCCcChhhcCCCCCCEEECCCCCCCCCCCCCCCCCCCCcEE
Q 001612          233 KLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTL  312 (1044)
Q Consensus       233 ~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L  312 (1044)
                        ++|+.|++++|++.. +|..+.  ++|++|++++|+++ .+|..+.  ++|+.|++++|.+...+.. +  .++|++|
T Consensus       262 --s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~LP~~-l--~~sL~~L  330 (754)
T PRK15370        262 --SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTALPET-L--PPGLKTL  330 (754)
T ss_pred             --CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccccCCcc-c--cccceec
Confidence              467777777777763 454443  46777777777776 3454332  4677777777776543211 1  2578888


Q ss_pred             EccCCcCCccCcccccCCCCCCEEeccCccCCCCCchhhcCCCCCcEEeCcCCcccCCCCcccCCCcccEEEccCCCCCC
Q 001612          313 MLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPG  392 (1044)
Q Consensus       313 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~  392 (1044)
                      ++++|.+++ +|..+.  ++|+.|++++|.+. .+|..+.  ++|+.|++++|.++..++.+.  ..|+.|++++|++. 
T Consensus       331 ~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~-  401 (754)
T PRK15370        331 EAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTNLPENLP--AALQIMQASRNNLV-  401 (754)
T ss_pred             cccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcc-
Confidence            888888774 565543  68888888888887 4666553  678888888888875433322  46888888888886 


Q ss_pred             CCCch---hhhcCCCccEEEeecCcCCCCCCcccCCCcccceeecCCcccCC
Q 001612          393 AISST---DWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGG  441 (1044)
Q Consensus       393 ~i~~~---~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  441 (1044)
                      .+|..   ....++++..+++.+|++..      ..+.+|+.+ ++.+.+.|
T Consensus       402 ~LP~sl~~~~~~~~~l~~L~L~~Npls~------~tl~~L~~L-l~s~~~~g  446 (754)
T PRK15370        402 RLPESLPHFRGEGPQPTRIIVEYNPFSE------RTIQNMQRL-MSSVGYQG  446 (754)
T ss_pred             cCchhHHHHhhcCCCccEEEeeCCCccH------HHHHHHHHh-hhcccccC
Confidence            55543   13345788899999998862      234455555 34444444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.77  E-value=1.4e-18  Score=207.60  Aligned_cols=137  Identities=26%  Similarity=0.379  Sum_probs=61.5

Q ss_pred             CceEEcCCCcccCCCCC-CCCCCcEEEccCCcCCcCCChhhhhccccceEEeccCCcccCcCccchhccCCCcEEEccCC
Q 001612          600 ITVLDLHSNQLQGNIPY-PPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKN  678 (1044)
Q Consensus       600 L~~L~l~~n~l~~~~~~-~~~~l~~l~ls~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N  678 (1044)
                      ...|+++++.++. +|. .++.++.|++++|+++ .+|..+.   .+|+.|++++|.+++ +|..+.  .+|+.|++++|
T Consensus       180 ~~~L~L~~~~Lts-LP~~Ip~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N  251 (754)
T PRK15370        180 KTELRLKILGLTT-IPACIPEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTS-IPATLP--DTIQEMELSIN  251 (754)
T ss_pred             ceEEEeCCCCcCc-CCcccccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCcccc-CChhhh--ccccEEECcCC
Confidence            3445555555442 222 2334445555555544 3443332   345555555555542 233322  24555555555


Q ss_pred             cccccCChhHhhcccccceEECCCCcCcCccCCCCCCCCCccEEeCCCCCCcccCcccccCCCCCcEEECCCCccc
Q 001612          679 KLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIR  754 (1044)
Q Consensus       679 ~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  754 (1044)
                      ++. .+|..+.   ++|+.|++++|+++. +|..+.  .+|+.|++++|++++ +|..+.  ++|+.|++++|+++
T Consensus       252 ~L~-~LP~~l~---s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt  317 (754)
T PRK15370        252 RIT-ELPERLP---SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT  317 (754)
T ss_pred             ccC-cCChhHh---CCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc
Confidence            555 4554432   345555555555543 233332  245555555555542 332221  24444555555544

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.68  E-value=6.1e-18  Score=188.93  Aligned_cols=135  Identities=25%  Similarity=0.222  Sum_probs=62.9

Q ss_pred             cccceEEeccCCcccCc----CccchhccCCCcEEEccCCcccc------cCChhHhhcccccceEECCCCcCcCccCCC
Q 001612          643 VSFTLFFSLSNNSITGV----IPETLCRAKYLLVLDLSKNKLSG------KMPTCLIKMSEILGVLNLRGNSLSGTLSVT  712 (1044)
Q Consensus       643 ~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~------~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~  712 (1044)
                      +..++.++++++.++..    ++..+...++++.++++++.+.+      .++..+... ++|+.|++++|.+.+..+..
T Consensus        22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~  100 (319)
T cd00116          22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG-CGLQELDLSDNALGPDGCGV  100 (319)
T ss_pred             HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc-CceeEEEccCCCCChhHHHH
Confidence            44566666666665432    33444455556666666665541      112222232 45555555555554433333


Q ss_pred             CCCCCC---ccEEeCCCCCCcc----cCcccccCC-CCCcEEECCCCccccC----CChhhhcCCCCcEEEccCCccc
Q 001612          713 FPGNCG---LHTLDLNGNQLGG----TVPKSLANC-RNLVVLDLGNNKIRDT----FPWWLENISSLRVLVLRSNSFY  778 (1044)
Q Consensus       713 ~~~l~~---L~~L~Ls~N~l~~----~~p~~l~~l-~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~  778 (1044)
                      +..+..   |++|++++|++++    .+...+..+ ++|+.|++++|.+++.    ++..+..+++|++|++++|.+.
T Consensus       101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  178 (319)
T cd00116         101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG  178 (319)
T ss_pred             HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence            333322   5555555555542    122233334 4555555555555422    1223333444555555555443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.67  E-value=1.1e-17  Score=186.82  Aligned_cols=186  Identities=23%  Similarity=0.230  Sum_probs=82.2

Q ss_pred             ccCCCCCCCCCCCCCcCCCCCCCCEEEcCCCCCCCC----CCccccCCCCCcEEecCCCCCCCCCcccCCCChhHHhhcc
Q 001612          107 LNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQ----IPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNL  182 (1044)
Q Consensus       107 LdLs~n~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~----lp~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~l~~~l~~l  182 (1044)
                      |+|+.+.+++...+..+..+.+|++|+++++.+++.    ++..+...+.|++|+++++.+...+.  ....+...+.++
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~--~~~~~~~~l~~~   80 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPR--GLQSLLQGLTKG   80 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcch--HHHHHHHHHHhc
Confidence            444444444333444444455555555555554322    33334444555555555544321000  001112234444


Q ss_pred             ccCceecCCCccCCCchhhhHHHHhccCCCceEEecCCCCCCCC----CcccccCC-CCCCEEECCCCCCCCC----ChH
Q 001612          183 AELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGP----IHPSLAKL-QSLSVIRLDQNDLLSP----VPE  253 (1044)
Q Consensus       183 ~~L~~L~l~~~~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~----~~~~l~~l-~~L~~L~Ls~n~~~~~----~~~  253 (1044)
                      ++|++|+++++.+.......+..+... ++|++|++++|++.+.    +...+..+ ++|+.|++++|.+++.    ++.
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~  159 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK  159 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence            555555555555544333333333322 3455555555554421    11223344 5555555555555422    223


Q ss_pred             hhhCCCCCcEEEccCCCCCCC----cChhhcCCCCCCEEECCCCCC
Q 001612          254 FLADFFNLTSLRLSHSRLNGT----FPEKILQVHTLETLDLSGNSL  295 (1044)
Q Consensus       254 ~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~~  295 (1044)
                      .+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+
T Consensus       160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i  205 (319)
T cd00116         160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL  205 (319)
T ss_pred             HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc
Confidence            344455555555555555421    222233344555555555543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.61  E-value=1.5e-17  Score=152.57  Aligned_cols=181  Identities=30%  Similarity=0.528  Sum_probs=138.2

Q ss_pred             CCCccEEeCCCCCCcccCcccccCCCCCcEEECCCCccccCCChhhhcCCCCcEEEccCCccccCCCCCCCCCCCCcccE
Q 001612          716 NCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQI  795 (1044)
Q Consensus       716 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i~~~~~~~~l~~L~~  795 (1044)
                      +...+.|.|++|+++ .+|..++.+.+|+.|++++|++. ..|..++.++.|+.|+++-|++.-.   |..++.+|.|++
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~l---prgfgs~p~lev  106 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNIL---PRGFGSFPALEV  106 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhcC---ccccCCCchhhh
Confidence            345666777777777 56667777777777777777776 4566677778888888877776422   777888888888


Q ss_pred             EEcCCCcCCCc-CChhhHhhhhhcccchhhhcccccccccccccccccccccceEEeecCchhhHhhhcCcceEEEccCC
Q 001612          796 VDLASNNFGGR-VPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRN  874 (1044)
Q Consensus       796 Ldls~N~l~g~-ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N  874 (1044)
                      ||+++|+++.. +|-.+|                                                 .++.|+.|+|+.|
T Consensus       107 ldltynnl~e~~lpgnff-------------------------------------------------~m~tlralyl~dn  137 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFF-------------------------------------------------YMTTLRALYLGDN  137 (264)
T ss_pred             hhccccccccccCCcchh-------------------------------------------------HHHHHHHHHhcCC
Confidence            88888888653 342211                                                 2455677889999


Q ss_pred             cccccCCcccCCCCCCCEEeCCCCCCcCCCcccccCcCCCCEEeCCCCccccccCccccCCCC---CcEEECcCCccccc
Q 001612          875 NFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTF---LSFLNLSHNNLVGK  951 (1044)
Q Consensus       875 ~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~---L~~l~l~~N~l~g~  951 (1044)
                      .|. .+|..+|+|++|+.|.+..|.+- ..|.+++.+++|+.|++.+|+++ .+|..++++.-   =+.+.+.+|++..+
T Consensus       138 dfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~p  214 (264)
T KOG0617|consen  138 DFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNP  214 (264)
T ss_pred             Ccc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCCh
Confidence            998 78889999999999999999998 89999999999999999999999 56767776542   34566778888766


Q ss_pred             CC
Q 001612          952 IP  953 (1044)
Q Consensus       952 ip  953 (1044)
                      |-
T Consensus       215 Ia  216 (264)
T KOG0617|consen  215 IA  216 (264)
T ss_pred             HH
Confidence            54

>PLN03150 hypothetical protein; Provisional

Probab=99.61  E-value=1.8e-15  Score=180.85  Aligned_cols=117  Identities=38%  Similarity=0.681  Sum_probs=104.8

Q ss_pred             cceEEEccCCcccccCCcccCCCCCCCEEeCCCCCCcCCCcccccCcCCCCEEeCCCCccccccCccccCCCCCcEEECc
Q 001612          865 IFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLS  944 (1044)
Q Consensus       865 ~l~~LdLs~N~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~  944 (1044)
                      .++.|+|++|.++|.+|.+++.+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|+.++++++|++|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccCCCccc--ccccccccccCCCCCCCCCCC-CCC
Q 001612          945 HNNLVGKIPISTQ--LQSFLATSFEGNKGLCGPPLN-VCR  981 (1044)
Q Consensus       945 ~N~l~g~ip~~~~--~~~~~~~~~~~n~~lcg~~~~-~c~  981 (1044)
                      +|+++|.+|....  ........+.||+++||.|.. .|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            9999999997522  223345678999999997643 374

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.53  E-value=2.2e-16  Score=144.88  Aligned_cols=185  Identities=29%  Similarity=0.423  Sum_probs=104.0

Q ss_pred             ccCCCcEEEccCCcccccCChhHhhcccccceEECCCCcCcCccCCCCCCCCCccEEeCCCCCCcccCcccccCCCCCcE
Q 001612          666 RAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVV  745 (1044)
Q Consensus       666 ~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  745 (1044)
                      +++..+.|.||+|+++ .+|..+.++ .+|++|++++|++.. .|..++.+++|+.|+++-|++. ..|..|+.++.|++
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l-~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev  106 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAEL-KNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV  106 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHh-hhhhhhhcccchhhh-cChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence            3445556666666666 556556655 566666666666542 3445555566666666666665 55666666666666


Q ss_pred             EECCCCcccc-CCChhhhcCCCCcEEEccCCccccCCCCCCCCCCCCcccEEEcCCCcCCCcCChhhHhhhhhcccchhh
Q 001612          746 LDLGNNKIRD-TFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDE  824 (1044)
Q Consensus       746 L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~g~i~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~~~~~~~~~~~  824 (1044)
                      ||+.+|.+.. ..|..|-.++.|+.|+|++|.|.-.   |..++.+++|++|.+.                         
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe~l---p~dvg~lt~lqil~lr-------------------------  158 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEIL---PPDVGKLTNLQILSLR-------------------------  158 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcCCCcccC---ChhhhhhcceeEEeec-------------------------
Confidence            6666666542 2344444444455555555544311   3333444444444443                         


Q ss_pred             hcccccccccccccccccccccceEEeecCchhhHhhhcCcceEEEccCCcccccCCcccCCCCCCCEEeCCCCCCcCCC
Q 001612          825 AQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPI  904 (1044)
Q Consensus       825 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~i  904 (1044)
                                                                      .|.+- ..|.++|.|+.|++|.+.+|+++ .+
T Consensus       159 ------------------------------------------------dndll-~lpkeig~lt~lrelhiqgnrl~-vl  188 (264)
T KOG0617|consen  159 ------------------------------------------------DNDLL-SLPKEIGDLTRLRELHIQGNRLT-VL  188 (264)
T ss_pred             ------------------------------------------------cCchh-hCcHHHHHHHHHHHHhcccceee-ec
Confidence                                                            33333 45777777777777777777777 56


Q ss_pred             cccccCcCC---CCEEeCCCCccccccCccc
Q 001612          905 PSAIGNLQQ---LESLDLSMNHLSGQIPIQL  932 (1044)
Q Consensus       905 p~~~~~l~~---L~~L~ls~N~l~g~~p~~~  932 (1044)
                      |.+++++.-   =+.+.+.+|.....|.+.+
T Consensus       189 ppel~~l~l~~~k~v~r~E~NPwv~pIaeQf  219 (264)
T KOG0617|consen  189 PPELANLDLVGNKQVMRMEENPWVNPIAEQF  219 (264)
T ss_pred             ChhhhhhhhhhhHHHHhhhhCCCCChHHHHH
Confidence            666665532   2345556666665555544

>PLN03150 hypothetical protein; Provisional

Probab=99.46  E-value=2.7e-13  Score=162.33  Aligned_cols=127  Identities=34%  Similarity=0.522  Sum_probs=98.3

Q ss_pred             CCChHHHHHHHHHHHhcCcCCCCCccccCCCCCCCCCc----ccceeEeCCC-----CCeEEEeCCCCCccCccCCCCCc
Q 001612           28 GQCQSDQQSLLLQMKSSLVFNSSLSFRMVQWSQSNDCC----TWSGVDCDEA-----GRVIGLDLSEESISAGIDNSSPL   98 (1044)
Q Consensus        28 ~~~~~~~~~~ll~~k~~~~~~~~~~~~l~~W~~~~~~c----~w~gv~C~~~-----~~v~~L~L~~~~l~g~~~~~~~l   98 (1044)
                      ..+.++|.+||+++|+++.. +.    ..+|. +..||    .|.||.|+..     .+|+.|+|+++.+.|.++.  .+
T Consensus       367 ~~t~~~~~~aL~~~k~~~~~-~~----~~~W~-g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~--~i  438 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLGL-PL----RFGWN-GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPN--DI  438 (623)
T ss_pred             cccCchHHHHHHHHHHhcCC-cc----cCCCC-CCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCH--HH
Confidence            45677899999999999853 32    24896 34443    7999999531     2589999999988888764  78


Q ss_pred             ccCCCCCcccCCCCCCCCCCCCCcCCCCCCCCEEEcCCCCCCCCCCccccCCCCCcEEecCCCCC
Q 001612           99 FSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNR  163 (1044)
Q Consensus        99 ~~l~~L~~LdLs~n~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~n~~  163 (1044)
                      ..+++|++|+|++|.+.+. +|..++.+++|++|+|++|.+.|.+|..++++++|++|++++|.+
T Consensus       439 ~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l  502 (623)
T PLN03150        439 SKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL  502 (623)
T ss_pred             hCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcc
Confidence            8888888888888888776 788888888888888888888888888888777777777777654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.16  E-value=4.3e-12  Score=130.92  Aligned_cols=242  Identities=24%  Similarity=0.266  Sum_probs=129.1

Q ss_pred             cccCCCCCcccCCCCCCCCC---CCCCcCCCCCCCCEEEcCCC---CCCCCCCcc-------ccCCCCCcEEecCCCCCC
Q 001612           98 LFSLKYLQSLNLAFNMFNAT---EIPSGLGSLTNLTNLNLSNA---GFAGQIPIQ-------VSGMTRLVTLDLSSLNRF  164 (1044)
Q Consensus        98 l~~l~~L~~LdLs~n~~~~~---~lp~~l~~l~~L~~L~Ls~~---~~~~~lp~~-------l~~l~~L~~L~ls~n~~~  164 (1044)
                      +..+..+++++||+|.|...   .+.+.+.+.++|+.-++|+-   ....++|..       +-.+++|++||||.|-++
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence            44556666777777766422   13344556667777777753   122234443       345667888888887764


Q ss_pred             CCCcccCCCChhHHhhccccCceecCCCccCCCchhhhHHH-H--------hccCCCceEEecCCCCCCCCCc----ccc
Q 001612          165 GAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQA-L--------SSLVPKLQVLSLSSCYLSGPIH----PSL  231 (1044)
Q Consensus       165 ~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~-l--------~~~~~~L~~L~Ls~n~l~~~~~----~~l  231 (1044)
                      ...    .+.+...+..+..|++|.|.+|.+...+...+.. +        ....+.|+++...+|++.....    ..|
T Consensus       106 ~~g----~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~  181 (382)
T KOG1909|consen  106 PKG----IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAF  181 (382)
T ss_pred             ccc----hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHH
Confidence            432    3445666778888888888888877655444322 1        1112556666666665543322    233


Q ss_pred             cCCCCCCEEECCCCCCCCC----ChHhhhCCCCCcEEEccCCCCCCC----cChhhcCCCCCCEEECCCCCCCCCCCCCC
Q 001612          232 AKLQSLSVIRLDQNDLLSP----VPEFLADFFNLTSLRLSHSRLNGT----FPEKILQVHTLETLDLSGNSLLQGSLPDF  303 (1044)
Q Consensus       232 ~~l~~L~~L~Ls~n~~~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~  303 (1044)
                      ...+.|+.+.++.|.|...    ....|..+++|+.|||.+|-++..    +...+..++                    
T Consensus       182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~--------------------  241 (382)
T KOG1909|consen  182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP--------------------  241 (382)
T ss_pred             HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc--------------------
Confidence            4445555555555544321    123344555555555555554422    112233334                    


Q ss_pred             CCCCCCcEEEccCCcCCccCcccc-----cCCCCCCEEeccCccCCCC----CchhhcCCCCCcEEeCcCCcc
Q 001612          304 PKNSSLRTLMLSNTNFSGVLPDSI-----GNLKNLSRLDLALCYFDGS----IPTSLANLTQLVYLDLSFNKF  367 (1044)
Q Consensus       304 ~~l~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l  367 (1044)
                          +|++|++++|.++......|     ...++|++|.+.+|.++..    +...+...+.|+.|++++|.+
T Consensus       242 ----~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  242 ----HLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ----hheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence                44444444444443222111     1245667777777666532    222344567777777777776

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.10  E-value=5.5e-12  Score=137.49  Aligned_cols=56  Identities=23%  Similarity=0.424  Sum_probs=41.1

Q ss_pred             ceEEEccCCcccccCCcccCCCCCCCEEeCCCCCCcCCCccccc---CcCCCCEEeCCCCc
Q 001612          866 FTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIG---NLQQLESLDLSMNH  923 (1044)
Q Consensus       866 l~~LdLs~N~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~ip~~~~---~l~~L~~L~ls~N~  923 (1044)
                      |..||+|+|+++ .||..|.+|+.|++|-|.+|.++ ..|..+.   ...=-++|+..-.+
T Consensus       213 Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  213 LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence            567888888888 78999999999999999999998 5666543   22334556655553

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.00  E-value=4.2e-11  Score=130.74  Aligned_cols=169  Identities=28%  Similarity=0.378  Sum_probs=107.7

Q ss_pred             EEccCCcCCcCCChhhhhccccceEEeccCCcccCcCccchhccCCCcEEEccCCcccccCChhHhhcccccceEECCCC
Q 001612          624 VDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGN  703 (1044)
Q Consensus       624 l~ls~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N  703 (1044)
                      .|++.|++. .+|..+.. +..|+.+.+..|.+. .+|..++++..|+.+||+.|+++ .+|..++.+  -|++|-+++|
T Consensus        80 aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l--pLkvli~sNN  153 (722)
T KOG0532|consen   80 ADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL--PLKVLIVSNN  153 (722)
T ss_pred             hhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC--cceeEEEecC
Confidence            344444443 45554443 455666666666665 56666777777777777777776 677766665  3677777777


Q ss_pred             cCcCccCCCCCCCCCccEEeCCCCCCcccCcccccCCCCCcEEECCCCccccCCChhhhcCCCCcEEEccCCccccCCCC
Q 001612          704 SLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISC  783 (1044)
Q Consensus       704 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i~~  783 (1044)
                      +++ .+|..++....|..||.+.|.+. .+|..+.++.+|+.|.+..|++.. +|..+..+ .|..||++.|++.. |  
T Consensus       154 kl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~L-pLi~lDfScNkis~-i--  226 (722)
T KOG0532|consen  154 KLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCSL-PLIRLDFSCNKISY-L--  226 (722)
T ss_pred             ccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCC-ceeeeecccCceee-c--
Confidence            765 34455556667777777777776 566667777777777777777653 34444533 36677777777653 2  


Q ss_pred             CCCCCCCCcccEEEcCCCcCCC
Q 001612          784 RENGDSWPKLQIVDLASNNFGG  805 (1044)
Q Consensus       784 ~~~~~~l~~L~~Ldls~N~l~g  805 (1044)
                      |..+..+..|++|-|.+|++..
T Consensus       227 Pv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  227 PVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             chhhhhhhhheeeeeccCCCCC
Confidence            6667777777777777777754

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.98  E-value=8.3e-11  Score=121.62  Aligned_cols=260  Identities=22%  Similarity=0.250  Sum_probs=153.9

Q ss_pred             CcCCCCCCCCEEEcCCCCCCCC----CCccccCCCCCcEEecCCCCCCCCCcc--cCCCChhHHhhccccCceecCCCcc
Q 001612          121 SGLGSLTNLTNLNLSNAGFAGQ----IPIQVSGMTRLVTLDLSSLNRFGAPLK--LENPNLSGLLQNLAELRELYLDGAN  194 (1044)
Q Consensus       121 ~~l~~l~~L~~L~Ls~~~~~~~----lp~~l~~l~~L~~L~ls~n~~~~~~~~--~~~~~l~~~l~~l~~L~~L~l~~~~  194 (1044)
                      +.+..+..+++++||+|.+...    +...+.+.+.|+..+++.-.-+.....  .....+..++..+++|++|+||+|-
T Consensus        24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA  103 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA  103 (382)
T ss_pred             HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence            3455678889999999988644    344566777888888876322111000  0011233456666777777777777


Q ss_pred             CCCchhhhHHHHhccCCCceEEecCCCCCCCCCcccccCCCCCCEEECCCCCCCCCChHhhhCCCCCcEEEccCCCCCCC
Q 001612          195 ISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGT  274 (1044)
Q Consensus       195 l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~  274 (1044)
                      +...+++.+..+.+.+..|++|.|.+|.+.-.....++.  .|..|.  .       ....+.-++|+++....|++...
T Consensus       104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~-------~kk~~~~~~Lrv~i~~rNrlen~  172 (382)
T KOG1909|consen  104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--V-------NKKAASKPKLRVFICGRNRLENG  172 (382)
T ss_pred             cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--H-------HhccCCCcceEEEEeeccccccc
Confidence            777777766666555577777777777664221111111  000000  0       01112234455555555554321


Q ss_pred             ----cChhhcCCCCCCEEECCCCCCCCCCC----CCCCCCCCCcEEEccCCcCCcc----CcccccCCCCCCEEeccCcc
Q 001612          275 ----FPEKILQVHTLETLDLSGNSLLQGSL----PDFPKNSSLRTLMLSNTNFSGV----LPDSIGNLKNLSRLDLALCY  342 (1044)
Q Consensus       275 ----~p~~l~~l~~L~~L~Ls~n~~~~~~~----~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~  342 (1044)
                          +...+...+.|+.+.+..|.+....+    ..|..+++|+.|||.+|-++..    +...+..+++|++|++++|.
T Consensus       173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl  252 (382)
T KOG1909|consen  173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL  252 (382)
T ss_pred             cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence                11233444555555555555544333    1345577777777777776632    34466778899999999999


Q ss_pred             CCCCCchhh-----cCCCCCcEEeCcCCcccCCCC-----cccCCCcccEEEccCCCCC
Q 001612          343 FDGSIPTSL-----ANLTQLVYLDLSFNKFVGPIP-----SLHMSKNLTHLDLSYNALP  391 (1044)
Q Consensus       343 l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~~~-----~~~~~~~L~~L~L~~n~l~  391 (1044)
                      +......+|     ...++|++|.+.+|.++..-.     .....+.|+.|++++|.+.
T Consensus       253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  253 LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            986554444     247899999999998863111     1112488999999999983

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.97  E-value=5e-10  Score=81.90  Aligned_cols=40  Identities=40%  Similarity=0.763  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHhcCcCCCCCccccCCCCCC--CCCcccceeEeC
Q 001612           32 SDQQSLLLQMKSSLVFNSSLSFRMVQWSQS--NDCCTWSGVDCD   73 (1044)
Q Consensus        32 ~~~~~~ll~~k~~~~~~~~~~~~l~~W~~~--~~~c~w~gv~C~   73 (1044)
                      ++|++||++||+++..++.  +.+.+|+..  .+||+|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~--~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPS--GVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC---CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccC--cccccCCCcCCCCCeeeccEEeC
Confidence            6899999999999986564  489999875  799999999996

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=1.5e-10  Score=122.84  Aligned_cols=191  Identities=23%  Similarity=0.211  Sum_probs=102.1

Q ss_pred             ccCCCCCCEEeccCccCCCCC--chhhcCCCCCcEEeCcCCcccCCCCccc--CCCcccEEEccCCCCCCCCCchhhhcC
Q 001612          327 IGNLKNLSRLDLALCYFDGSI--PTSLANLTQLVYLDLSFNKFVGPIPSLH--MSKNLTHLDLSYNALPGAISSTDWEHL  402 (1044)
Q Consensus       327 l~~l~~L~~L~Ls~n~l~~~~--p~~l~~l~~L~~L~L~~n~l~~~~~~~~--~~~~L~~L~L~~n~l~~~i~~~~l~~l  402 (1044)
                      ...|++++.|||+.|-+....  ......+++|+.|+++.|++........  ..+.|+.|.++.|.++..--......+
T Consensus       142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f  221 (505)
T KOG3207|consen  142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF  221 (505)
T ss_pred             hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence            344555555555555444221  1223455666666666665543322221  225666666666666522112224456


Q ss_pred             CCccEEEeecCcCCCCCCcccCCCcccceeecCCcccCCCCCcccccCCCCCCEEEcCCCcCCCC-CCch-----hhcCC
Q 001612          403 SNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGP-IPMS-----IFDLR  476 (1044)
Q Consensus       403 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~p~~-----l~~l~  476 (1044)
                      |+|+.|++..|............+..|++|+|++|.+...........++.|+.|+++.+.+... .|..     ...++
T Consensus       222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~  301 (505)
T KOG3207|consen  222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFP  301 (505)
T ss_pred             CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccc
Confidence            77777777777432222333334566777777777665443323333456666666666666542 2222     23467


Q ss_pred             CccEEEecCCcccCccchHHHHhCCCCCeEeCCCceeeeec
Q 001612          477 NLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNA  517 (1044)
Q Consensus       477 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  517 (1044)
                      +|+.|++..|++...-....+..+++|+.|.+..|.+....
T Consensus       302 kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~  342 (505)
T KOG3207|consen  302 KLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKET  342 (505)
T ss_pred             cceeeecccCccccccccchhhccchhhhhhcccccccccc
Confidence            77777777777753333344555666666666666655433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.95  E-value=1.1e-09  Score=125.84  Aligned_cols=102  Identities=31%  Similarity=0.413  Sum_probs=53.9

Q ss_pred             EEEccCCcccccCChhHhhcccccceEECCCCcCcCccCCCCCCC-CCccEEeCCCCCCcccCcccccCCCCCcEEECCC
Q 001612          672 VLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGN-CGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGN  750 (1044)
Q Consensus       672 ~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  750 (1044)
                      .++++.|++...+ ..+... +.++.|++.+|.++.+.+ ..... .+|+.|++++|++. .+|..+..++.|+.|++++
T Consensus        97 ~l~~~~~~~~~~~-~~~~~~-~~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~  172 (394)
T COG4886          97 SLDLNLNRLRSNI-SELLEL-TNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF  172 (394)
T ss_pred             eeeccccccccCc-hhhhcc-cceeEEecCCcccccCcc-ccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence            4555555553122 222222 445556666665554333 22222 25666666666666 4445566666777777777


Q ss_pred             CccccCCChhhhcCCCCcEEEccCCccc
Q 001612          751 NKIRDTFPWWLENISSLRVLVLRSNSFY  778 (1044)
Q Consensus       751 N~l~~~~p~~l~~l~~L~~L~L~~N~l~  778 (1044)
                      |+++...+ ..+..+.|+.|++++|++.
T Consensus       173 N~l~~l~~-~~~~~~~L~~L~ls~N~i~  199 (394)
T COG4886         173 NDLSDLPK-LLSNLSNLNNLDLSGNKIS  199 (394)
T ss_pred             chhhhhhh-hhhhhhhhhheeccCCccc
Confidence            77664332 3335566666666666554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=1.8e-10  Score=122.21  Aligned_cols=209  Identities=25%  Similarity=0.190  Sum_probs=111.1

Q ss_pred             cCCCCCCEEeccCccCCCCCc-hhhcCCCCCcEEeCcCCcccCCCCc---ccCCCcccEEEccCCCCCCCCCchhhhcCC
Q 001612          328 GNLKNLSRLDLALCYFDGSIP-TSLANLTQLVYLDLSFNKFVGPIPS---LHMSKNLTHLDLSYNALPGAISSTDWEHLS  403 (1044)
Q Consensus       328 ~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~---~~~~~~L~~L~L~~n~l~~~i~~~~l~~l~  403 (1044)
                      +++.+|++..|.++.+..... .....|++++.||++.|-+..-.+.   ...+++|+.|+++.|.+.-......-..  
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~--  195 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL--  195 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh--
Confidence            456677777777776652211 3566789999999999877642221   1223556666666665542222221223  


Q ss_pred             CccEEEeecCcCCCCCCcccCCCcccceeecCCcccCCCCCcccccCCCCCCEEEcCCCcCCCCCCchhhcCCCccEEEe
Q 001612          404 NLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILIL  483 (1044)
Q Consensus       404 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  483 (1044)
                                            +++|+.|.++.|.++..--......+|+|+.|++..|............++.|++|+|
T Consensus       196 ----------------------l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdL  253 (505)
T KOG3207|consen  196 ----------------------LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDL  253 (505)
T ss_pred             ----------------------hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccc
Confidence                                  3445555555554442111112223455555555555322222233344556667777


Q ss_pred             cCCcccCccchHHHHhCCCCCeEeCCCceeeeecCCCC------CCCccccEEEccCCCCcCCCC---ccCCCCCcEEEC
Q 001612          484 SSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDS------SFPSQVRTLRLASCKLRVIPN---LKNQSKLFNLDL  554 (1044)
Q Consensus       484 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~------~~~~~L~~L~L~~n~l~~l~~---l~~l~~L~~L~L  554 (1044)
                      ++|++...-.....+.++.|+.|+++.+.+..+.....      ...++|++|++..|++..++.   +..+++|+.|.+
T Consensus       254 s~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~  333 (505)
T KOG3207|consen  254 SNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRI  333 (505)
T ss_pred             cCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhc
Confidence            77666533333345666667777777666665443332      334466667777776665554   444455566666


Q ss_pred             CCCcCC
Q 001612          555 SDNQIS  560 (1044)
Q Consensus       555 s~n~l~  560 (1044)
                      ..|.++
T Consensus       334 ~~n~ln  339 (505)
T KOG3207|consen  334 TLNYLN  339 (505)
T ss_pred             cccccc
Confidence            666554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.85  E-value=8.7e-10  Score=107.76  Aligned_cols=107  Identities=35%  Similarity=0.389  Sum_probs=30.2

Q ss_pred             cCCCcEEEccCCcccccCChhHhhcccccceEECCCCcCcCccCCCCCCCCCccEEeCCCCCCcccCcccc-cCCCCCcE
Q 001612          667 AKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSL-ANCRNLVV  745 (1044)
Q Consensus       667 l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~  745 (1044)
                      +..+++|+|++|.|+ .|. .+...+.+|+.|++++|.++...  .+..++.|++|++++|+++.. +..+ ..+++|+.
T Consensus        18 ~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~   92 (175)
T PF14580_consen   18 PVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQE   92 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred             ccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCcc-ccchHHhCCcCCE
Confidence            334566666666665 232 23222245666666666665442  355566677777777776643 2233 34666777


Q ss_pred             EECCCCccccCCC-hhhhcCCCCcEEEccCCccc
Q 001612          746 LDLGNNKIRDTFP-WWLENISSLRVLVLRSNSFY  778 (1044)
Q Consensus       746 L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~  778 (1044)
                      |++++|++...-. ..+..+++|+.|+|.+|++.
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            7777776654322 34556666666666666664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.79  E-value=7.1e-09  Score=119.23  Aligned_cols=107  Identities=34%  Similarity=0.433  Sum_probs=47.2

Q ss_pred             hCCCCCcEEEccCCCCCCCcChhhcCCC-CCCEEECCCCCCCCCCCCCCCCCCCCcEEEccCCcCCccCcccccCCCCCC
Q 001612          256 ADFFNLTSLRLSHSRLNGTFPEKILQVH-TLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLS  334 (1044)
Q Consensus       256 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  334 (1044)
                      ..++.++.|++.+|.++ .++....... +|+.|++++|++.... .....+++|+.|++++|+++ .+|...+..+.|+
T Consensus       113 ~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~  189 (394)
T COG4886         113 LELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLN  189 (394)
T ss_pred             hcccceeEEecCCcccc-cCccccccchhhcccccccccchhhhh-hhhhccccccccccCCchhh-hhhhhhhhhhhhh
Confidence            33455555555555555 4444444442 5555555555433221 12223344444444444444 2232223444555


Q ss_pred             EEeccCccCCCCCchhhcCCCCCcEEeCcCCc
Q 001612          335 RLDLALCYFDGSIPTSLANLTQLVYLDLSFNK  366 (1044)
Q Consensus       335 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~  366 (1044)
                      .|++++|.+. .+|...+....|+++.+++|.
T Consensus       190 ~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~  220 (394)
T COG4886         190 NLDLSGNKIS-DLPPEIELLSALEELDLSNNS  220 (394)
T ss_pred             heeccCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence            5555555544 334333333444455554443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.77  E-value=8.2e-09  Score=100.99  Aligned_cols=111  Identities=27%  Similarity=0.328  Sum_probs=43.9

Q ss_pred             HhCCCCCeEeCCCceeeeecCCCCCCCccccEEEccCCCCcCCCCccCCCCCcEEECCCCcCCCCCChhHh-hhcccccc
Q 001612          498 QRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVW-EIGNVSLQ  576 (1044)
Q Consensus       498 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~~~~~~L~  576 (1044)
                      .+..++++|++.+|.|+.+.... ....+|+.|++++|.++.++.+..++.|++|++++|.|+. +++.+. .++  +|+
T Consensus        16 ~n~~~~~~L~L~~n~I~~Ie~L~-~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp--~L~   91 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTIENLG-ATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISS-ISEGLDKNLP--NLQ   91 (175)
T ss_dssp             --------------------S---TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S--CHHHHHH-T--T--
T ss_pred             ccccccccccccccccccccchh-hhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCc-cccchHHhCC--cCC
Confidence            34445666666666666554322 2335788888888888888888889999999999999984 444443 333  599


Q ss_pred             eeecccccccCccCCcccCCCCCCceEEcCCCcccC
Q 001612          577 YLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQG  612 (1044)
Q Consensus       577 ~L~Ls~N~l~~l~~~~~~~~l~~L~~L~l~~n~l~~  612 (1044)
                      .|++++|++..+.....+..+++|+.|++.+|++..
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence            999999999998877778889999999999999874

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.71  E-value=1e-08  Score=125.58  Aligned_cols=60  Identities=27%  Similarity=0.239  Sum_probs=42.9

Q ss_pred             CCCcccCCCCC--CCCCCCCCcCCCCCCCCEEEcCCCCCCCCCCccccCCCCCcEEecCCCCC
Q 001612          103 YLQSLNLAFNM--FNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNR  163 (1044)
Q Consensus       103 ~L~~LdLs~n~--~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~n~~  163 (1044)
                      .|++|=+.+|.  +... -+++|..++.|++|||++|.-.+.+|..|+.|.+||+|++++..+
T Consensus       546 ~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I  607 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI  607 (889)
T ss_pred             ccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc
Confidence            57777777664  3221 234577788888888888777778888888888888888887654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.70  E-value=4.3e-09  Score=106.05  Aligned_cols=132  Identities=35%  Similarity=0.471  Sum_probs=82.5

Q ss_pred             CCCCEEEcCCCcCCCCCCchhhcCCCccEEEecCCcccCccchHHHHhCCCCCeEeCCCceeeeecCCCCCCCccccEEE
Q 001612          452 SALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLR  531 (1044)
Q Consensus       452 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  531 (1044)
                      ..|+++|+++|.++ .+..+..-.+.++.|++++|.+. .+.  .+..+++|+.||+++|.++.+.++.... -++++|.
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~--nLa~L~~L~~LDLS~N~Ls~~~Gwh~KL-GNIKtL~  358 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ--NLAELPQLQLLDLSGNLLAECVGWHLKL-GNIKTLK  358 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh--hhhhcccceEeecccchhHhhhhhHhhh-cCEeeee
Confidence            34666777777666 45555666677777777777775 332  2667777777777777776655543222 2455555


Q ss_pred             ccCCCCcCCCCccCCCCCcEEECCCCcCCCCCChhHhhhcccccceeecccccccCccCCcccCCCCCCceEEcCCCccc
Q 001612          532 LASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQ  611 (1044)
Q Consensus       532 L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~l~~n~l~  611 (1044)
                      +++|.+..+..+..+-+|..||+++|                          ++..+.....++++|.|+.+.+.+|++.
T Consensus       359 La~N~iE~LSGL~KLYSLvnLDl~~N--------------------------~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  359 LAQNKIETLSGLRKLYSLVNLDLSSN--------------------------QIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             hhhhhHhhhhhhHhhhhheecccccc--------------------------chhhHHHhcccccccHHHHHhhcCCCcc
Confidence            55555555554444444555555444                          4444444455778888999999999887


Q ss_pred             CCC
Q 001612          612 GNI  614 (1044)
Q Consensus       612 ~~~  614 (1044)
                      +..
T Consensus       413 ~~v  415 (490)
T KOG1259|consen  413 GSV  415 (490)
T ss_pred             ccc
Confidence            543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.69  E-value=1.4e-08  Score=124.36  Aligned_cols=105  Identities=27%  Similarity=0.303  Sum_probs=55.7

Q ss_pred             CCceEEecCCCC--CCCCCcccccCCCCCCEEECCCCCCCCCChHhhhCCCCCcEEEccCCCCCCCcChhhcCCCCCCEE
Q 001612          211 PKLQVLSLSSCY--LSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETL  288 (1044)
Q Consensus       211 ~~L~~L~Ls~n~--l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  288 (1044)
                      +.|++|-+..|.  +.....+.|..++.|++|||++|.-.+.+|+.++++-+||+|+++++.+. .+|..++++..|.+|
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL  623 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence            445555555553  33333334555666666666665555556666666666666666666655 556666666666666


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCcEEEccC
Q 001612          289 DLSGNSLLQGSLPDFPKNSSLRTLMLSN  316 (1044)
Q Consensus       289 ~Ls~n~~~~~~~~~~~~l~~L~~L~L~~  316 (1044)
                      ++..+............+++|++|.+..
T Consensus       624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  624 NLEVTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             ccccccccccccchhhhcccccEEEeec
Confidence            6655543322222222244455544443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=8.5e-10  Score=111.21  Aligned_cols=161  Identities=22%  Similarity=0.236  Sum_probs=106.6

Q ss_pred             CCCCcccCCCCCCCCCCCCCcCCCCCCCCEEEcCCCCCCCCCCccccCCCCCcEEecCCCCCCCCCcccCCCChhHHhhc
Q 001612          102 KYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQN  181 (1044)
Q Consensus       102 ~~L~~LdLs~n~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~l~~~l~~  181 (1044)
                      +.|++||||...++...+-..+..|.+|+.|.|.++.+.+.+-..|++-.+|+.|+++.+.-      +......-.+.+
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG------~t~n~~~ll~~s  258 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSG------FTENALQLLLSS  258 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccc------cchhHHHHHHHh
Confidence            35899999998887665556678899999999999999988888999999999999998642      223445566888


Q ss_pred             cccCceecCCCccCCCchhhhHHHHhccCCCceEEecCCCCCC---CCCcccccCCCCCCEEECCCCC-CCCCChHhhhC
Q 001612          182 LAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLS---GPIHPSLAKLQSLSVIRLDQND-LLSPVPEFLAD  257 (1044)
Q Consensus       182 l~~L~~L~l~~~~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~---~~~~~~l~~l~~L~~L~Ls~n~-~~~~~~~~l~~  257 (1044)
                      ++.|++|+++++.+.......  .+.+.-++|+.|++++++-.   ..+..-..++++|.+|||++|. +.......|.+
T Consensus       259 cs~L~~LNlsWc~l~~~~Vtv--~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k  336 (419)
T KOG2120|consen  259 CSRLDELNLSWCFLFTEKVTV--AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK  336 (419)
T ss_pred             hhhHhhcCchHhhccchhhhH--HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh
Confidence            999999999998776544322  22333367888888876422   1111222445566666665553 22222233445


Q ss_pred             CCCCcEEEccCCC
Q 001612          258 FFNLTSLRLSHSR  270 (1044)
Q Consensus       258 l~~L~~L~L~~n~  270 (1044)
                      ++.|++|.++.|.
T Consensus       337 f~~L~~lSlsRCY  349 (419)
T KOG2120|consen  337 FNYLQHLSLSRCY  349 (419)
T ss_pred             cchheeeehhhhc
Confidence            5555555555554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.65  E-value=8.7e-09  Score=103.90  Aligned_cols=128  Identities=30%  Similarity=0.389  Sum_probs=67.6

Q ss_pred             CCccEEEeecCcCCCCCCcccCCCcccceeecCCcccCCCCCcccccCCCCCCEEEcCCCcCCCCCCchhhcCCCccEEE
Q 001612          403 SNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILI  482 (1044)
Q Consensus       403 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  482 (1044)
                      ..|+++||++|.++ .+..+..-.|.++.|+++.|.+...-.   .+.+++|+.||+++|.++ .+..+=..+-+.+.|.
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n---La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN---LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK  358 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh---hhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence            34555566655555 333444445555555555555442211   112445555555555554 3333334455556666


Q ss_pred             ecCCcccCccchHHHHhCCCCCeEeCCCceeeeecCCCCCCCccccEEEccCCCCcCCC---CccCCCCCcEEECCCCcC
Q 001612          483 LSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIP---NLKNQSKLFNLDLSDNQI  559 (1044)
Q Consensus       483 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~l~---~l~~l~~L~~L~Ls~n~l  559 (1044)
                      |++|.+.   ....++++-+|..|                        ++++|+|..+.   .+++++-|+.+.+.+|++
T Consensus       359 La~N~iE---~LSGL~KLYSLvnL------------------------Dl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  359 LAQNKIE---TLSGLRKLYSLVNL------------------------DLSSNQIEELDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             hhhhhHh---hhhhhHhhhhheec------------------------cccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence            6666553   11234444444444                        44444444333   377888889999999988


Q ss_pred             CCC
Q 001612          560 SGE  562 (1044)
Q Consensus       560 ~~~  562 (1044)
                      .+.
T Consensus       412 ~~~  414 (490)
T KOG1259|consen  412 AGS  414 (490)
T ss_pred             ccc
Confidence            743

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.64  E-value=4.8e-09  Score=120.58  Aligned_cols=245  Identities=27%  Similarity=0.264  Sum_probs=151.9

Q ss_pred             cccceEEeccCCcccCcCccchhccCCCcEEEccCCcccccCChhHhhcccccceEECCCCcCcCccCCCCCCCCCccEE
Q 001612          643 VSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTL  722 (1044)
Q Consensus       643 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  722 (1044)
                      +..++.+.+..|.+.. +-..++.+++|+.|++.+|+|. .+...+..+ ++|++|++++|.|+.+.+  +..++.|+.|
T Consensus        71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~-~~L~~L~ls~N~I~~i~~--l~~l~~L~~L  145 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSL-VNLQVLDLSFNKITKLEG--LSTLTLLKEL  145 (414)
T ss_pred             hHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhh-hcchheeccccccccccc--hhhccchhhh
Confidence            3445555566666653 2233566777888888888877 333323333 677788888887776543  4445567888


Q ss_pred             eCCCCCCcccCcccccCCCCCcEEECCCCccccCCC-hhhhcCCCCcEEEccCCccccCCCCCCCCCCCCcccEEEcCCC
Q 001612          723 DLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFP-WWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASN  801 (1044)
Q Consensus       723 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~g~i~~~~~~~~l~~L~~Ldls~N  801 (1044)
                      ++++|.++.  ...+..++.|+.+++++|++...-+ . ...+.+++.+++.+|.+..    ...+..+..+..+++..|
T Consensus       146 ~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~----i~~~~~~~~l~~~~l~~n  218 (414)
T KOG0531|consen  146 NLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE----IEGLDLLKKLVLLSLLDN  218 (414)
T ss_pred             eeccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc----ccchHHHHHHHHhhcccc
Confidence            888888763  2335557778888888888776655 3 4667777777777776642    233344444444555555


Q ss_pred             cCCCcCChhhHhhhhhcccchhhhcccccccccccccccccccccceEEeecCchhhHhhhcC--cceEEEccCCccccc
Q 001612          802 NFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILS--IFTSIDFSRNNFDGP  879 (1044)
Q Consensus       802 ~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~l~~LdLs~N~l~g~  879 (1044)
                      .++-.-+..                                                   .+.  .++.+++++|.+. .
T Consensus       219 ~i~~~~~l~---------------------------------------------------~~~~~~L~~l~l~~n~i~-~  246 (414)
T KOG0531|consen  219 KISKLEGLN---------------------------------------------------ELVMLHLRELYLSGNRIS-R  246 (414)
T ss_pred             cceeccCcc---------------------------------------------------cchhHHHHHHhcccCccc-c
Confidence            553211100                                                   011  2567777888777 3


Q ss_pred             CCcccCCCCCCCEEeCCCCCCcCCCcccccCcCCCCEEeCCCCccccc---cCcc-ccCCCCCcEEECcCCcccccCC
Q 001612          880 IPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQ---IPIQ-LANLTFLSFLNLSHNNLVGKIP  953 (1044)
Q Consensus       880 ip~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~g~---~p~~-~~~l~~L~~l~l~~N~l~g~ip  953 (1044)
                      +|..+..+..+..|++++|++...  ..+...+.+..+..+.|.+...   .... ....+.+..+.+.+|+.....+
T Consensus       247 ~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  247 SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             ccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            445667778888888888887743  2244556677777777776522   1222 4566778888888888777665

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.61  E-value=2.4e-08  Score=80.12  Aligned_cols=59  Identities=37%  Similarity=0.469  Sum_probs=31.0

Q ss_pred             ccceEECCCCcCcCccCCCCCCCCCccEEeCCCCCCcccCcccccCCCCCcEEECCCCc
Q 001612          694 ILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNK  752 (1044)
Q Consensus       694 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  752 (1044)
                      +|++|++++|+++.+.++.|.++++|++|++++|+++...|.+|.++++|+.|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34455555555554444555555555555555555554444555555555555555554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.60  E-value=2.5e-08  Score=80.01  Aligned_cols=59  Identities=46%  Similarity=0.630  Sum_probs=30.9

Q ss_pred             CCCEEeCCCCCCcCCCcccccCcCCCCEEeCCCCccccccCccccCCCCCcEEECcCCc
Q 001612          889 SLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNN  947 (1044)
Q Consensus       889 ~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N~  947 (1044)
                      +|+.|++++|+++...+..|.++++|++||+++|+++...|..|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34455555555553333445555555555555555555445555555555555555554

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.48  E-value=2.2e-08  Score=115.13  Aligned_cols=270  Identities=27%  Similarity=0.248  Sum_probs=145.0

Q ss_pred             CCccEEEecCCcccCccchHHHHhCCCCCeEeCCCceeeeecCCCCCCCccccEEEccCCCCcCCCC-ccCCCCCcEEEC
Q 001612          476 RNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPN-LKNQSKLFNLDL  554 (1044)
Q Consensus       476 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~l~~-l~~l~~L~~L~L  554 (1044)
                      +.++.++...+...+. ... ...+..++.+.+..|.+..+.. ......+++.+++.+|++..+.. +..+++|+.|++
T Consensus        49 ~~~~~~~~~~~~~~~~-~~~-~~~l~~l~~l~l~~n~i~~~~~-~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~l  125 (414)
T KOG0531|consen   49 SDLEEIDLIFNLDGSD-EDL-VESLTSLKELNLRQNLIAKILN-HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDL  125 (414)
T ss_pred             chhhhhcchhccccch-hhh-HHHhHhHHhhccchhhhhhhhc-ccccccceeeeeccccchhhcccchhhhhcchheec
Confidence            3445555555543311 111 1445566666666666654211 12233456666666666666666 666666666666


Q ss_pred             CCCcCCCCCChhHhhhcccccceeecccccccCccCCcccCCCCCCceEEcCCCcccCCCCCCCCCCcEEEccCCcCCcC
Q 001612          555 SDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSS  634 (1044)
Q Consensus       555 s~n~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~ls~n~~~~~  634 (1044)
                      ++|.|+...+-.  .+.  .|+.|++++|.++.+...   ..                                      
T Consensus       126 s~N~I~~i~~l~--~l~--~L~~L~l~~N~i~~~~~~---~~--------------------------------------  160 (414)
T KOG0531|consen  126 SFNKITKLEGLS--TLT--LLKELNLSGNLISDISGL---ES--------------------------------------  160 (414)
T ss_pred             cccccccccchh--hcc--chhhheeccCcchhccCC---cc--------------------------------------
Confidence            666665332211  111  144444444444443221   11                                      


Q ss_pred             CChhhhhccccceEEeccCCcccCcCc-cchhccCCCcEEEccCCcccccCChhHhhcccccceEECCCCcCcCccCCCC
Q 001612          635 IPDDIGNFVSFTLFFSLSNNSITGVIP-ETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTF  713 (1044)
Q Consensus       635 ~p~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~~  713 (1044)
                              +..++.+++++|.++..-+ . ...+.+++.+++++|.+.. +. .+... ..+..+++..|.++..-+...
T Consensus       161 --------l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~-i~-~~~~~-~~l~~~~l~~n~i~~~~~l~~  228 (414)
T KOG0531|consen  161 --------LKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE-IE-GLDLL-KKLVLLSLLDNKISKLEGLNE  228 (414)
T ss_pred             --------chhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc-cc-chHHH-HHHHHhhcccccceeccCccc
Confidence                    3444444555555543333 2 3556677777777777652 22 12221 345555777777765433221


Q ss_pred             CCCCCccEEeCCCCCCcccCcccccCCCCCcEEECCCCccccCCChhhhcCCCCcEEEccCCccccCCCCCC--CCCCCC
Q 001612          714 PGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRE--NGDSWP  791 (1044)
Q Consensus       714 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i~~~~--~~~~l~  791 (1044)
                      .....|+.+++++|++. ..+..+..+..+..|++.+|++...-.  +...+.+..+....|++........  .....+
T Consensus       229 ~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (414)
T KOG0531|consen  229 LVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLEG--LERLPKLSELWLNDNKLALSEAISQEYITSAAP  305 (414)
T ss_pred             chhHHHHHHhcccCccc-cccccccccccccccchhhcccccccc--ccccchHHHhccCcchhcchhhhhccccccccc
Confidence            11113788888888887 344667777888888888888765433  3445566667777776643221122  255667


Q ss_pred             cccEEEcCCCcCCCcCC
Q 001612          792 KLQIVDLASNNFGGRVP  808 (1044)
Q Consensus       792 ~L~~Ldls~N~l~g~ip  808 (1044)
                      .++.+.+..|......+
T Consensus       306 ~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  306 TLVTLTLELNPIRKISS  322 (414)
T ss_pred             cccccccccCccccccc
Confidence            77778888777765443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.47  E-value=7e-09  Score=104.75  Aligned_cols=144  Identities=22%  Similarity=0.300  Sum_probs=68.3

Q ss_pred             CcccceeEeCCCCCeEEEeCCCCCccCccCCCCCcccCC--CCCcccCCCCCCCCCCCCCcCCCC-CCCCEEEcCCCCCC
Q 001612           64 CCTWSGVDCDEAGRVIGLDLSEESISAGIDNSSPLFSLK--YLQSLNLAFNMFNATEIPSGLGSL-TNLTNLNLSNAGFA  140 (1044)
Q Consensus        64 ~c~w~gv~C~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~--~L~~LdLs~n~~~~~~lp~~l~~l-~~L~~L~Ls~~~~~  140 (1044)
                      |=+|.|..-|. .--+.+|+.+..+..     .++.++.  ....+.+.........+.+.+.-+ ..|++||||+..++
T Consensus       125 C~Rfyr~~~de-~lW~~lDl~~r~i~p-----~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it  198 (419)
T KOG2120|consen  125 CKRFYRLASDE-SLWQTLDLTGRNIHP-----DVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVIT  198 (419)
T ss_pred             HHHHhhccccc-cceeeeccCCCccCh-----hHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhhee
Confidence            44688776654 456778888876652     1333332  122233332222221122222222 35777777776654


Q ss_pred             CC-CCccccCCCCCcEEecCCCCCCCCCcccCCCChhHHhhccccCceecCCCcc-CCCchhhhHHHHhccCCCceEEec
Q 001612          141 GQ-IPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGAN-ISAPGIEWCQALSSLVPKLQVLSL  218 (1044)
Q Consensus       141 ~~-lp~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~-l~~~~~~~~~~l~~~~~~L~~L~L  218 (1044)
                      -. +-.-++.|++|+.|.+.++++        +..+...+++-.+|+.|+++++. +++.+..   -+.+.|..|..|++
T Consensus       199 ~stl~~iLs~C~kLk~lSlEg~~L--------dD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~---ll~~scs~L~~LNl  267 (419)
T KOG2120|consen  199 VSTLHGILSQCSKLKNLSLEGLRL--------DDPIVNTIAKNSNLVRLNLSMCSGFTENALQ---LLLSSCSRLDELNL  267 (419)
T ss_pred             HHHHHHHHHHHHhhhhcccccccc--------CcHHHHHHhccccceeeccccccccchhHHH---HHHHhhhhHhhcCc
Confidence            22 122345566666666666554        12234445555566666666542 3332221   12222355555555


Q ss_pred             CCCCCC
Q 001612          219 SSCYLS  224 (1044)
Q Consensus       219 s~n~l~  224 (1044)
                      +.|.+.
T Consensus       268 sWc~l~  273 (419)
T KOG2120|consen  268 SWCFLF  273 (419)
T ss_pred             hHhhcc
Confidence            555443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.29  E-value=2.3e-07  Score=92.81  Aligned_cols=168  Identities=22%  Similarity=0.227  Sum_probs=98.0

Q ss_pred             HHhhccccCceecCCCccCCCchhhhHHHHhccCCCceEEecCCCC---CCCCCc-------ccccCCCCCCEEECCCCC
Q 001612          177 GLLQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCY---LSGPIH-------PSLAKLQSLSVIRLDQND  246 (1044)
Q Consensus       177 ~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~---l~~~~~-------~~l~~l~~L~~L~Ls~n~  246 (1044)
                      ..+..+..+.+++++||.+.....+|++.......+|+..++++--   ....++       .++.+|++|+..+||+|.
T Consensus        24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA  103 (388)
T COG5238          24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA  103 (388)
T ss_pred             HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence            3355577888888888888887777776554444778888777532   111222       345788999999999998


Q ss_pred             CCCCChH----hhhCCCCCcEEEccCCCCCCCcChhhc-------------CCCCCCEEECCCCCCCCCCCCC----CCC
Q 001612          247 LLSPVPE----FLADFFNLTSLRLSHSRLNGTFPEKIL-------------QVHTLETLDLSGNSLLQGSLPD----FPK  305 (1044)
Q Consensus       247 ~~~~~~~----~l~~l~~L~~L~L~~n~l~~~~p~~l~-------------~l~~L~~L~Ls~n~~~~~~~~~----~~~  305 (1044)
                      +....|+    .++..+.|++|.+++|.+...--..++             +-+.|++.+...|++..++..-    +..
T Consensus       104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~s  183 (388)
T COG5238         104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLES  183 (388)
T ss_pred             cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHh
Confidence            8776664    456678899999999976422112222             2355666666666554443321    111


Q ss_pred             CCCCcEEEccCCcCCccC-----cccccCCCCCCEEeccCccCC
Q 001612          306 NSSLRTLMLSNTNFSGVL-----PDSIGNLKNLSRLDLALCYFD  344 (1044)
Q Consensus       306 l~~L~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~Ls~n~l~  344 (1044)
                      -..|+++.+..|.|.-..     -..+..+.+|+.||+.+|.++
T Consensus       184 h~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft  227 (388)
T COG5238         184 HENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             hcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence            234555555555443110     011233445555555555444

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.15  E-value=1.2e-07  Score=106.97  Aligned_cols=200  Identities=26%  Similarity=0.268  Sum_probs=133.7

Q ss_pred             CCCCcEEEccCCcCCccC-cccccCCCCCCEEeccCccCCCCCchhhcC-CCCCcEEeCcCCccc----------CCCCc
Q 001612          306 NSSLRTLMLSNTNFSGVL-PDSIGNLKNLSRLDLALCYFDGSIPTSLAN-LTQLVYLDLSFNKFV----------GPIPS  373 (1044)
Q Consensus       306 l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~----------~~~~~  373 (1044)
                      +++++.|.+-.-.-.+.. |-.+..+.+|++|.+.++.+..  ...+.. -..|++|-..+ .+.          |.+..
T Consensus        83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~n  159 (1096)
T KOG1859|consen   83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHN-SLDALRHVFASCGGDISN  159 (1096)
T ss_pred             HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhc-cHHHHHHHHHHhcccccc
Confidence            344455544333222222 5567788899999999998763  111111 12344443221 111          12222


Q ss_pred             ccCCCcccEEEccCCCCCCCCCchhhhcCCCccEEEeecCcCCCCCCcccCCCcccceeecCCcccCCCCCcccccCCCC
Q 001612          374 LHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSA  453 (1044)
Q Consensus       374 ~~~~~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~  453 (1044)
                      ...-..|...+.+.|.+. .+ ...+.-++.|+.|+|+.|+++..  +.+..|++|++|||+.|.+.. +|.+....+ +
T Consensus       160 s~~Wn~L~~a~fsyN~L~-~m-D~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc-~  233 (1096)
T KOG1859|consen  160 SPVWNKLATASFSYNRLV-LM-DESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGC-K  233 (1096)
T ss_pred             chhhhhHhhhhcchhhHH-hH-HHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcc-ccccchhhh-h
Confidence            112246788888888875 33 33478889999999999999853  378889999999999999874 454444333 4


Q ss_pred             CCEEEcCCCcCCCCCCchhhcCCCccEEEecCCcccCccchHHHHhCCCCCeEeCCCceeeee
Q 001612          454 LDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVN  516 (1044)
Q Consensus       454 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  516 (1044)
                      |+.|.+++|.++..  ..+.++.+|+.||+++|-+.+.-....+..+..|+.|+|.+|++-.-
T Consensus       234 L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  234 LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            99999999988732  35778999999999999888776667778888899999999987643

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.10  E-value=2.9e-07  Score=103.81  Aligned_cols=128  Identities=33%  Similarity=0.368  Sum_probs=103.7

Q ss_pred             CCCCEEEcCCCcCCCCCCchhhcCCCccEEEecCCcccCccchHHHHhCCCCCeEeCCCceeeeecCCCCCCCccccEEE
Q 001612          452 SALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLR  531 (1044)
Q Consensus       452 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  531 (1044)
                      ..|...+.+.|.+. .+..++.-++.++.|+|++|+++ .+  +.+..|++|++|||++|.++.++......+ .|..|.
T Consensus       164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~  238 (1096)
T KOG1859|consen  164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLN  238 (1096)
T ss_pred             hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hh--HHHHhcccccccccccchhccccccchhhh-hheeee
Confidence            35777788888887 66677888899999999999987 33  368999999999999999998877665555 499999


Q ss_pred             ccCCCCcCCCCccCCCCCcEEECCCCcCCCCCC-hhHhhhcccccceeeccccccc
Q 001612          532 LASCKLRVIPNLKNQSKLFNLDLSDNQISGEIP-NWVWEIGNVSLQYLNLSHNLLS  586 (1044)
Q Consensus       532 L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~~~~~~L~~L~Ls~N~l~  586 (1044)
                      +++|.++.+-.+.++.+|+.||+++|-+.+--. ..+|.+.  .|+.|.|.+|.+-
T Consensus       239 lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs--~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  239 LRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLS--SLIVLWLEGNPLC  292 (1096)
T ss_pred             ecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHH--HHHHHhhcCCccc
Confidence            999999999999999999999999998875321 1233333  3888899998774

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.03  E-value=1.3e-06  Score=88.59  Aligned_cols=62  Identities=24%  Similarity=0.286  Sum_probs=28.7

Q ss_pred             cCCCCCCEEECCCCCCCCCChHhhhCCCCCcEEEccCCCCCCC-cChhhcCCCCCCEEECCCC
Q 001612          232 AKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGT-FPEKILQVHTLETLDLSGN  293 (1044)
Q Consensus       232 ~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n  293 (1044)
                      .+++.|+.|+++.|.+...+...-....+|++|-|.+..+.-. ....+..++.++.|.++.|
T Consensus        94 e~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen   94 EQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             hcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence            3444444444444444333222113345566666665554321 2233445566666666655

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.02  E-value=1.9e-07  Score=83.71  Aligned_cols=86  Identities=28%  Similarity=0.459  Sum_probs=49.7

Q ss_pred             cceEEEccCCcccccCCcccC-CCCCCCEEeCCCCCCcCCCcccccCcCCCCEEeCCCCccccccCccccCCCCCcEEEC
Q 001612          865 IFTSIDFSRNNFDGPIPEEIG-RLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNL  943 (1044)
Q Consensus       865 ~l~~LdLs~N~l~g~ip~~~~-~L~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l  943 (1044)
                      .++.++||+|.|... |+.|. ..+.++.|||++|.++ .+|.++..++.|+.|+++.|.+. ..|..+..|.+|..|+.
T Consensus        54 el~~i~ls~N~fk~f-p~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   54 ELTKISLSDNGFKKF-PKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS  130 (177)
T ss_pred             eEEEEecccchhhhC-CHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence            355566666666633 33333 3345666666666666 56666666666666666666666 34444555666666666


Q ss_pred             cCCcccccCCC
Q 001612          944 SHNNLVGKIPI  954 (1044)
Q Consensus       944 ~~N~l~g~ip~  954 (1044)
                      .+|... +||.
T Consensus       131 ~~na~~-eid~  140 (177)
T KOG4579|consen  131 PENARA-EIDV  140 (177)
T ss_pred             CCCccc-cCcH
Confidence            665543 4443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.97  E-value=7.1e-06  Score=82.38  Aligned_cols=158  Identities=20%  Similarity=0.225  Sum_probs=90.9

Q ss_pred             CCceEEecCCCCCCCCCccc----ccCCCCCCEEECCCCCCCCCChHhh-------------hCCCCCcEEEccCCCCCC
Q 001612          211 PKLQVLSLSSCYLSGPIHPS----LAKLQSLSVIRLDQNDLLSPVPEFL-------------ADFFNLTSLRLSHSRLNG  273 (1044)
Q Consensus       211 ~~L~~L~Ls~n~l~~~~~~~----l~~l~~L~~L~Ls~n~~~~~~~~~l-------------~~l~~L~~L~L~~n~l~~  273 (1044)
                      |+|+..+||+|.+....|+.    ++.-+.|++|.+++|.+...-...+             .+-|.|++.....|++. 
T Consensus        92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-  170 (388)
T COG5238          92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-  170 (388)
T ss_pred             CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-
Confidence            66666666666665444432    3445666666666665432211111             23466777777777665 


Q ss_pred             CcChh-----hcCCCCCCEEECCCCCCCCCCCCC-----CCCCCCCcEEEccCCcCCccC----cccccCCCCCCEEecc
Q 001612          274 TFPEK-----ILQVHTLETLDLSGNSLLQGSLPD-----FPKNSSLRTLMLSNTNFSGVL----PDSIGNLKNLSRLDLA  339 (1044)
Q Consensus       274 ~~p~~-----l~~l~~L~~L~Ls~n~~~~~~~~~-----~~~l~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~Ls  339 (1044)
                      ..|..     +..-.+|+++.+..|.+....+..     +..+.+|+.|++.+|-++-..    ...+...+.|++|.+.
T Consensus       171 ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln  250 (388)
T COG5238         171 NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN  250 (388)
T ss_pred             cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence            22211     222246777777777665544332     223678888888888776332    2344556678889998


Q ss_pred             CccCCCCCchhhc------CCCCCcEEeCcCCcccC
Q 001612          340 LCYFDGSIPTSLA------NLTQLVYLDLSFNKFVG  369 (1044)
Q Consensus       340 ~n~l~~~~p~~l~------~l~~L~~L~L~~n~l~~  369 (1044)
                      +|-++.....++-      ..++|..|...+|...+
T Consensus       251 DClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~  286 (388)
T COG5238         251 DCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG  286 (388)
T ss_pred             chhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence            8887754443321      24666777776665543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.94  E-value=7.3e-07  Score=94.93  Aligned_cols=276  Identities=20%  Similarity=0.207  Sum_probs=123.1

Q ss_pred             CCCcccCCCCCCCCC-CCCCcCCCCCCCCEEEcCCCCCC-CCCCccc-cCCCCCcEEecCCCCCCCCCcccCCCChhHHh
Q 001612          103 YLQSLNLAFNMFNAT-EIPSGLGSLTNLTNLNLSNAGFA-GQIPIQV-SGMTRLVTLDLSSLNRFGAPLKLENPNLSGLL  179 (1044)
Q Consensus       103 ~L~~LdLs~n~~~~~-~lp~~l~~l~~L~~L~Ls~~~~~-~~lp~~l-~~l~~L~~L~ls~n~~~~~~~~~~~~~l~~~l  179 (1044)
                      .||.|.+.++.-.+. .+-..-.+++++++|++.+|... +..-.++ ..+++|++|++..|..      +....+....
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~------iT~~~Lk~la  212 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSS------ITDVSLKYLA  212 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccch------hHHHHHHHHH
Confidence            456666665532221 12223346666666666666421 1111222 2566667766665421      1111222334


Q ss_pred             hccccCceecCCCcc-CCCchhhhHHHHhccCCCceEEecCCCCCCCCCcccc----cCCCCCCEEECCCCCCCCCChHh
Q 001612          180 QNLAELRELYLDGAN-ISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSL----AKLQSLSVIRLDQNDLLSPVPEF  254 (1044)
Q Consensus       180 ~~l~~L~~L~l~~~~-l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l----~~l~~L~~L~Ls~n~~~~~~~~~  254 (1044)
                      ..+++|++++++++. +++.+.+.+.   +-+..++.+.+++|.=.+  ...+    +.+..+.++++..+.......-+
T Consensus       213 ~gC~kL~~lNlSwc~qi~~~gv~~~~---rG~~~l~~~~~kGC~e~~--le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~  287 (483)
T KOG4341|consen  213 EGCRKLKYLNLSWCPQISGNGVQALQ---RGCKELEKLSLKGCLELE--LEALLKAAAYCLEILKLNLQHCNQLTDEDLW  287 (483)
T ss_pred             HhhhhHHHhhhccCchhhcCcchHHh---ccchhhhhhhhccccccc--HHHHHHHhccChHhhccchhhhccccchHHH
Confidence            556666777666662 3433322211   111334444444432111  1111    12233444444444222211111


Q ss_pred             --hhCCCCCcEEEccCCCCCCC-cChhh-cCCCCCCEEECCCCCC-CCCCCCCCC-CCCCCcEEEccCCcCC--ccCccc
Q 001612          255 --LADFFNLTSLRLSHSRLNGT-FPEKI-LQVHTLETLDLSGNSL-LQGSLPDFP-KNSSLRTLMLSNTNFS--GVLPDS  326 (1044)
Q Consensus       255 --l~~l~~L~~L~L~~n~l~~~-~p~~l-~~l~~L~~L~Ls~n~~-~~~~~~~~~-~l~~L~~L~L~~n~l~--~~~p~~  326 (1044)
                        -..+..|+.|+.+++...+. .-.++ .+.++|+.|.++.|+. .+..+..+. .++.|+.+++.++...  +.+...
T Consensus       288 ~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl  367 (483)
T KOG4341|consen  288 LIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASL  367 (483)
T ss_pred             HHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhh
Confidence              12345566666655532211 11222 2456666666666542 122222222 2566666666665432  112222


Q ss_pred             ccCCCCCCEEeccCccCCCCC-----chhhcCCCCCcEEeCcCCcccC--CCCcccCCCcccEEEccCCC
Q 001612          327 IGNLKNLSRLDLALCYFDGSI-----PTSLANLTQLVYLDLSFNKFVG--PIPSLHMSKNLTHLDLSYNA  389 (1044)
Q Consensus       327 l~~l~~L~~L~Ls~n~l~~~~-----p~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~~~L~~L~L~~n~  389 (1044)
                      -.+++.|++|.+++|......     ...-..+..|+.+.+++++...  .......+++|+.+++.+++
T Consensus       368 s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  368 SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            245667777777766532111     1112345567777777776532  22233344677777776665

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.92  E-value=7.5e-06  Score=98.13  Aligned_cols=145  Identities=15%  Similarity=0.212  Sum_probs=93.7

Q ss_pred             cccCceecCCCccCCCchhhhHHHHhccCCCceEEecCCCCCCCC-CcccccCCCCCCEEECCCCCCCCCChHhhhCCCC
Q 001612          182 LAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGP-IHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFN  260 (1044)
Q Consensus       182 l~~L~~L~l~~~~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~  260 (1044)
                      -++|++|+++|...  ....|...++.++|+|+.|.+++-.+... ......++++|..||+|+.+++..  ..++++++
T Consensus       121 r~nL~~LdI~G~~~--~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~Lkn  196 (699)
T KOG3665|consen  121 RQNLQHLDISGSEL--FSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKN  196 (699)
T ss_pred             HHhhhhcCccccch--hhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhcccc
Confidence            36788898888543  35678888888889999999888665432 223345778888888888877665  56777888


Q ss_pred             CcEEEccCCCCCC-CcChhhcCCCCCCEEECCCCCCCCCCCCCCCCCCCCcEEEccCCcCCccCcccccCCCCCCEEecc
Q 001612          261 LTSLRLSHSRLNG-TFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLA  339 (1044)
Q Consensus       261 L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  339 (1044)
                      |+.|.+.+=.+.. ..-..+.++++|++||+|..+.....                  .+....-+.-..+|+|+.||.|
T Consensus       197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~------------------~ii~qYlec~~~LpeLrfLDcS  258 (699)
T KOG3665|consen  197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT------------------KIIEQYLECGMVLPELRFLDCS  258 (699)
T ss_pred             HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccch------------------HHHHHHHHhcccCccccEEecC
Confidence            8888877766552 22345677788888887765432211                  0010111122346777788877


Q ss_pred             CccCCCCCc
Q 001612          340 LCYFDGSIP  348 (1044)
Q Consensus       340 ~n~l~~~~p  348 (1044)
                      +..+...+-
T Consensus       259 gTdi~~~~l  267 (699)
T KOG3665|consen  259 GTDINEEIL  267 (699)
T ss_pred             CcchhHHHH
Confidence            776664443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.69  E-value=0.00014  Score=80.10  Aligned_cols=75  Identities=16%  Similarity=0.259  Sum_probs=43.9

Q ss_pred             hhccCCCcEEEccCCcccccCChhHhhcccccceEECCCCcCcCccCCCCCCCCCccEEeCCCC-CCcccCcccccCCCC
Q 001612          664 LCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGN-QLGGTVPKSLANCRN  742 (1044)
Q Consensus       664 l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~  742 (1044)
                      +..+..++.|++++|.++ .+|    .++.+|++|+++++.-...+|+.++  .+|+.|++++| .+. .+|.      +
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP----~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------s  113 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLP----VLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------S  113 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccC----CCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------c
Confidence            444567778888888776 566    2345677777776544444554443  46677777766 333 3442      3


Q ss_pred             CcEEECCCCc
Q 001612          743 LVVLDLGNNK  752 (1044)
Q Consensus       743 L~~L~Ls~N~  752 (1044)
                      |+.|+++.|.
T Consensus       114 Le~L~L~~n~  123 (426)
T PRK15386        114 VRSLEIKGSA  123 (426)
T ss_pred             cceEEeCCCC
Confidence            5555555444

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.63  E-value=1e-05  Score=82.31  Aligned_cols=185  Identities=21%  Similarity=0.262  Sum_probs=95.6

Q ss_pred             CCCccEEEeecCcCCC--CCCcccCCCcccceeecCCcccCCCCCcccccCCCCCCEEEcCCCcCCCCCCchhhcCCCcc
Q 001612          402 LSNLVYVDLRYNSLNG--SIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLK  479 (1044)
Q Consensus       402 l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  479 (1044)
                      ++.++.+||.+|.++.  .+..-+.++|.|+.|+++.|.+...+....                         ....+|+
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-------------------------~p~~nl~  124 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-------------------------LPLKNLR  124 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-------------------------ccccceE
Confidence            4556666666666653  122223345555555555555443332221                         2345666


Q ss_pred             EEEecCCcccCccchHHHHhCCCCCeEeCCCceeeee---cCCCCCCCccccEEEccCCCCcCCC---C-ccCCCCCcEE
Q 001612          480 ILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVN---AGSDSSFPSQVRTLRLASCKLRVIP---N-LKNQSKLFNL  552 (1044)
Q Consensus       480 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~~~~L~~L~L~~n~l~~l~---~-l~~l~~L~~L  552 (1044)
                      .|.|.+..+.-......+..+|.++.|.++.|.+...   +.......+.++++....|......   . ..-++++..+
T Consensus       125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv  204 (418)
T KOG2982|consen  125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV  204 (418)
T ss_pred             EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence            6666666554333344566677777777777743321   1111223334556666555443211   1 2335566667


Q ss_pred             ECCCCcCCCCCChhHhhhcccccceeecccccccCccCCcccCCCCCCceEEcCCCcccC
Q 001612          553 DLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQG  612 (1044)
Q Consensus       553 ~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~l~~n~l~~  612 (1044)
                      .+..|++...-... ..-+.+.+.-|+++.|++..+.....+.+++.|..|.++++++..
T Consensus       205 ~v~e~PlK~~s~ek-~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  205 FVCEGPLKTESSEK-GSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             eeecCcccchhhcc-cCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            77777665322111 001112344567777777766555556667777777777776653

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.60  E-value=0.00014  Score=70.53  Aligned_cols=101  Identities=23%  Similarity=0.304  Sum_probs=78.7

Q ss_pred             cccEEEccCCCCcCCCCccCCCCCcEEECCCCcCCCCCChhHhhhcccccceeecccccccCccCCcccCCCCCCceEEc
Q 001612          526 QVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDL  605 (1044)
Q Consensus       526 ~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~l  605 (1044)
                      +...+++++|.+..++.+.+++.|.+|.+.+|.|+..-|.--...+  .|+.|.+.+|.+..+.+...+..++.|++|.+
T Consensus        43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p--~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLP--NLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhcc--ccceEEecCcchhhhhhcchhccCCccceeee
Confidence            5677888889888888899999999999999999966665333332  49999999999999988888889999999999


Q ss_pred             CCCcccCCCCC------CCCCCcEEEccC
Q 001612          606 HSNQLQGNIPY------PPPKAVLVDYSN  628 (1044)
Q Consensus       606 ~~n~l~~~~~~------~~~~l~~l~ls~  628 (1044)
                      -+|+.+..--.      ..|+++.+|++.
T Consensus       121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             cCCchhcccCceeEEEEecCcceEeehhh
Confidence            99988743222      235555555544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.59  E-value=5.6e-05  Score=55.32  Aligned_cols=36  Identities=44%  Similarity=0.696  Sum_probs=18.0

Q ss_pred             CCCEEeCCCCCCcCCCcccccCcCCCCEEeCCCCccc
Q 001612          889 SLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLS  925 (1044)
Q Consensus       889 ~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~  925 (1044)
                      +|++|++++|+++ .+|..+++|++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3555555555555 34444555555555555555554

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.55  E-value=8.8e-06  Score=73.29  Aligned_cols=61  Identities=30%  Similarity=0.484  Sum_probs=30.0

Q ss_pred             cCcceEEEccCCcccccCCcccCCCCCCCEEeCCCCCCcCCCcccccCcCCCCEEeCCCCccc
Q 001612          863 LSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLS  925 (1044)
Q Consensus       863 l~~l~~LdLs~N~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~  925 (1044)
                      ++.++.+++++|.++ .+|.++..++.|+.||++.|.+. ..|+.+..|.++-.||...|.+-
T Consensus        76 f~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen   76 FPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             cchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            344445555555554 44444555555555555555554 34444444555555555555444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.54  E-value=0.00011  Score=71.11  Aligned_cols=107  Identities=25%  Similarity=0.188  Sum_probs=77.2

Q ss_pred             cccceEECCCCcCcCccCCCCCCCCCccEEeCCCCCCcccCcccccCCCCCcEEECCCCccccCCC-hhhhcCCCCcEEE
Q 001612          693 EILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFP-WWLENISSLRVLV  771 (1044)
Q Consensus       693 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~  771 (1044)
                      .....+||++|.+...  ..|+.++.|.+|.|++|+|+.+.|.--.-+++|+.|.|.+|.+...-. .-+..||.|++|.
T Consensus        42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            4566677777776543  357778889999999999987777666667888999999988763321 2266788999999


Q ss_pred             ccCCccccCCC-CCCCCCCCCcccEEEcCCC
Q 001612          772 LRSNSFYGNIS-CRENGDSWPKLQIVDLASN  801 (1044)
Q Consensus       772 L~~N~l~g~i~-~~~~~~~l~~L~~Ldls~N  801 (1044)
                      +-+|+.+..-. -...+..+|+|++||...=
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            99997743211 1235778899999998654

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.51  E-value=0.00033  Score=77.29  Aligned_cols=134  Identities=16%  Similarity=0.224  Sum_probs=69.8

Q ss_pred             CCCceEEcCCCcccCCCCCCCCCCcEEEccCCcCCcCCChhhhhccccceEEeccCC-cccCcCccchhccCCCcEEEcc
Q 001612          598 SPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNN-SITGVIPETLCRAKYLLVLDLS  676 (1044)
Q Consensus       598 ~~L~~L~l~~n~l~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~Ls  676 (1044)
                      .+++.|++++|.++ .+|..+++++.|.++++.--..+|..+   ...|+.|.+++| .+. .+|.      +|+.|+++
T Consensus        52 ~~l~~L~Is~c~L~-sLP~LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~  120 (426)
T PRK15386         52 RASGRLYIKDCDIE-SLPVLPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLPE------SVRSLEIK  120 (426)
T ss_pred             cCCCEEEeCCCCCc-ccCCCCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-cccc------ccceEEeC
Confidence            45556666665444 234445556666666543333445433   356777777777 333 3443      46667776


Q ss_pred             CCcccccCChhHhhcccccceEECCCCc-Cc-CccCCCCCCCCCccEEeCCCCCCcccCcccccCCCCCcEEECCCCc
Q 001612          677 KNKLSGKMPTCLIKMSEILGVLNLRGNS-LS-GTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNK  752 (1044)
Q Consensus       677 ~N~l~~~ip~~~~~~~~~L~~L~L~~N~-l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  752 (1044)
                      .+... .    +..++++|+.|.+.+++ .. ..+|..++  ++|++|++++|... ..|..+.  .+|+.|+++.|.
T Consensus       121 ~n~~~-~----L~~LPssLk~L~I~~~n~~~~~~lp~~LP--sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~  188 (426)
T PRK15386        121 GSATD-S----IKNVPNGLTSLSINSYNPENQARIDNLIS--PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ  188 (426)
T ss_pred             CCCCc-c----cccCcchHhheeccccccccccccccccC--CcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence            65542 1    11223456666664432 11 11121222  56778888777755 3444333  477777777663

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.50  E-value=6.7e-05  Score=54.90  Aligned_cols=37  Identities=46%  Similarity=0.671  Sum_probs=22.3

Q ss_pred             CccEEeCCCCCCcccCcccccCCCCCcEEECCCCcccc
Q 001612          718 GLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRD  755 (1044)
Q Consensus       718 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  755 (1044)
                      +|++|++++|+++ .+|..+++|++|+.|++++|+++.
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            4666666666666 345556666666666666666653

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.42  E-value=2e-05  Score=84.27  Aligned_cols=230  Identities=24%  Similarity=0.237  Sum_probs=126.7

Q ss_pred             CCCCEEEcCCCCCCCCCC--ccccCCCCCcEEecCCCCCCCCCcccCCCChhHHhhccccCceecCCCc-cCCCchhhhH
Q 001612          127 TNLTNLNLSNAGFAGQIP--IQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGA-NISAPGIEWC  203 (1044)
Q Consensus       127 ~~L~~L~Ls~~~~~~~lp--~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~-~l~~~~~~~~  203 (1044)
                      ..|+.|.++++.-.+.-|  ....+++++++|++.+++.      +.+..+..+-+.+++|+++++..+ .+++...   
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~------iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~L---  208 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKK------ITDSSLLSLARYCRKLRHLNLHSCSSITDVSL---  208 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhccee------ccHHHHHHHHHhcchhhhhhhcccchhHHHHH---
Confidence            468889999886554433  2345788899998888752      334555666778888999988884 4555443   


Q ss_pred             HHHhccCCCceEEecCCCC-CCCC-CcccccCCCCCCEEECCCCCCCCCChHhh----hCCCCCcEEEccCCCC-CCCcC
Q 001612          204 QALSSLVPKLQVLSLSSCY-LSGP-IHPSLAKLQSLSVIRLDQNDLLSPVPEFL----ADFFNLTSLRLSHSRL-NGTFP  276 (1044)
Q Consensus       204 ~~l~~~~~~L~~L~Ls~n~-l~~~-~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l----~~l~~L~~L~L~~n~l-~~~~p  276 (1044)
                      +.+.+-|++|++++++.|. +++. +.....+++.++.+.+.++.-.+  .+.+    +.+..+..+++..|.. +..--
T Consensus       209 k~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~--le~l~~~~~~~~~i~~lnl~~c~~lTD~~~  286 (483)
T KOG4341|consen  209 KYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE--LEALLKAAAYCLEILKLNLQHCNQLTDEDL  286 (483)
T ss_pred             HHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc--HHHHHHHhccChHhhccchhhhccccchHH
Confidence            3344446888888888873 4432 12233455666666666553211  1222    2345566666666632 21111


Q ss_pred             hh-hcCCCCCCEEECCCCCC-CCCCCCCCC-CCCCCcEEEccCCc-CCccCcccc-cCCCCCCEEeccCccCCCC--Cch
Q 001612          277 EK-ILQVHTLETLDLSGNSL-LQGSLPDFP-KNSSLRTLMLSNTN-FSGVLPDSI-GNLKNLSRLDLALCYFDGS--IPT  349 (1044)
Q Consensus       277 ~~-l~~l~~L~~L~Ls~n~~-~~~~~~~~~-~l~~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~--~p~  349 (1044)
                      .. =..+..|++|+.+++.. .+..+..+. ++.+|+.|.++.++ ++..--..+ .+++.|+.+++..+.....  +..
T Consensus       287 ~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~s  366 (483)
T KOG4341|consen  287 WLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLAS  366 (483)
T ss_pred             HHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhh
Confidence            11 12466777777777642 111122222 36677777777664 222111112 3456666666666643211  111


Q ss_pred             hhcCCCCCcEEeCcCCcc
Q 001612          350 SLANLTQLVYLDLSFNKF  367 (1044)
Q Consensus       350 ~l~~l~~L~~L~L~~n~l  367 (1044)
                      .-.+++.|+.+.++++..
T Consensus       367 ls~~C~~lr~lslshce~  384 (483)
T KOG4341|consen  367 LSRNCPRLRVLSLSHCEL  384 (483)
T ss_pred             hccCCchhccCChhhhhh
Confidence            123456666666665543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.11  E-value=0.00036  Score=83.96  Aligned_cols=153  Identities=21%  Similarity=0.215  Sum_probs=98.4

Q ss_pred             CCCCCcccCCCCCCCCCCCCCcCC-CCCCCCEEEcCCCCCCCC-CCccccCCCCCcEEecCCCCCCCCCcccCCCChhHH
Q 001612          101 LKYLQSLNLAFNMFNATEIPSGLG-SLTNLTNLNLSNAGFAGQ-IPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGL  178 (1044)
Q Consensus       101 l~~L~~LdLs~n~~~~~~lp~~l~-~l~~L~~L~Ls~~~~~~~-lp~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~l~~~  178 (1044)
                      -.+|++||+++...-...=|..++ .||+|+.|.+++-.+... .-....++++|..||+|++.+.+.          ..
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl----------~G  190 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL----------SG  190 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc----------HH
Confidence            367888888876443222344454 578888888888666433 223345788888888888776443          35


Q ss_pred             hhccccCceecCCCccCCCchhhhHHHHhccCCCceEEecCCCCCCCCC--c----ccccCCCCCCEEECCCCCCCCCCh
Q 001612          179 LQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPI--H----PSLAKLQSLSVIRLDQNDLLSPVP  252 (1044)
Q Consensus       179 l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~--~----~~l~~l~~L~~L~Ls~n~~~~~~~  252 (1044)
                      +.++++|+.|.+.+-.+..  ...+..+..+ .+|++||+|........  .    +.-..+++|+.||.|++.+...+-
T Consensus       191 IS~LknLq~L~mrnLe~e~--~~~l~~LF~L-~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~l  267 (699)
T KOG3665|consen  191 ISRLKNLQVLSMRNLEFES--YQDLIDLFNL-KKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEIL  267 (699)
T ss_pred             HhccccHHHHhccCCCCCc--hhhHHHHhcc-cCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHH
Confidence            7788888888887766654  2234556666 88999999876544322  1    122358899999999988776544


Q ss_pred             Hhh-hCCCCCcEEEc
Q 001612          253 EFL-ADFFNLTSLRL  266 (1044)
Q Consensus       253 ~~l-~~l~~L~~L~L  266 (1044)
                      +.+ ...++|+.+..
T Consensus       268 e~ll~sH~~L~~i~~  282 (699)
T KOG3665|consen  268 EELLNSHPNLQQIAA  282 (699)
T ss_pred             HHHHHhCccHhhhhh
Confidence            433 33455554443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.82  E-value=0.0024  Score=60.12  Aligned_cols=121  Identities=17%  Similarity=0.211  Sum_probs=49.9

Q ss_pred             hhccccceEEeccCCcccCcCccchhccCCCcEEEccCCcccccCChhHhhcccccceEECCCCcCcCccCCCCCCCCCc
Q 001612          640 GNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGL  719 (1044)
Q Consensus       640 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L  719 (1044)
                      +..+..++.+.+.. .+..+....|..+++|+.+++.++ +. .++...+..+++++.+.+.+ .+.......|..+++|
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccccc
Confidence            33355566666553 455455556666666777766664 44 34443333334566666654 4444445556666666


Q ss_pred             cEEeCCCCCCcccCcccccCCCCCcEEECCCCccccCCChhhhcCCCC
Q 001612          720 HTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSL  767 (1044)
Q Consensus       720 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  767 (1044)
                      +.+++..+ +.......|.++ .|+.+.+.. .+.......|.++++|
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            66666554 444444556665 666666654 3333444455555544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.79  E-value=0.0025  Score=59.99  Aligned_cols=122  Identities=14%  Similarity=0.216  Sum_probs=44.1

Q ss_pred             cccCCCCCCEEECCCCCCCCCChHhhhCCCCCcEEEccCCCCCCCcChhhcCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q 001612          230 SLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSL  309 (1044)
Q Consensus       230 ~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L  309 (1044)
                      +|.++++|+.+.+.. .+.......|.++++|+.+.+..+ +.......+..+++|+.+.+.+ .+.......|..+++|
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            445555555555543 233333344555555666665553 3322233444555555555543 2333333445555555


Q ss_pred             cEEEccCCcCCccCcccccCCCCCCEEeccCccCCCCCchhhcCCCCC
Q 001612          310 RTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQL  357 (1044)
Q Consensus       310 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  357 (1044)
                      +.+.+..+ +.......|.++ +|+.+.+.. .+......+|.++++|
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            55555443 332333445554 555555554 2222333445555444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.66  E-value=0.0015  Score=66.46  Aligned_cols=108  Identities=19%  Similarity=0.240  Sum_probs=52.2

Q ss_pred             CCCCCcccCCCCCCCCCCCCCcCCCCCCCCEEEcCCC--CCCCCCCccccCCCCCcEEecCCCCCCCCCcccCCCChhHH
Q 001612          101 LKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNA--GFAGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGL  178 (1044)
Q Consensus       101 l~~L~~LdLs~n~~~~~~lp~~l~~l~~L~~L~Ls~~--~~~~~lp~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~l~~~  178 (1044)
                      +..|+.|++.+..++..   ..+-.+++|++|.+|.|  .+.+.++...-++++|++|++++|++..+.       -..-
T Consensus        42 ~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ls-------tl~p  111 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLS-------TLRP  111 (260)
T ss_pred             ccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccc-------ccch
Confidence            34444444444433321   23345566666666666  455555555555566666666666653211       0112


Q ss_pred             hhccccCceecCCCccCCCchhhhHHHHhccCCCceEEecC
Q 001612          179 LQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLS  219 (1044)
Q Consensus       179 l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~~~~~L~~L~Ls  219 (1044)
                      ++.+.+|..|++..|..+... ++-..+..++++|++||-.
T Consensus       112 l~~l~nL~~Ldl~n~~~~~l~-dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  112 LKELENLKSLDLFNCSVTNLD-DYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             hhhhcchhhhhcccCCccccc-cHHHHHHHHhhhhcccccc
Confidence            455555666666655444321 2222333333666655543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.43  E-value=0.001  Score=78.93  Aligned_cols=63  Identities=25%  Similarity=0.169  Sum_probs=29.8

Q ss_pred             CCCCCCEEECCCCC-CCCCChHhhhC-CCCCcEEEccCCC-CCCCcChh-hcCCCCCCEEECCCCCC
Q 001612          233 KLQSLSVIRLDQND-LLSPVPEFLAD-FFNLTSLRLSHSR-LNGTFPEK-ILQVHTLETLDLSGNSL  295 (1044)
Q Consensus       233 ~l~~L~~L~Ls~n~-~~~~~~~~l~~-l~~L~~L~L~~n~-l~~~~p~~-l~~l~~L~~L~Ls~n~~  295 (1044)
                      .+++|+.|+++++. ++...-..++. +++|++|.+.+|. ++...-.. ...++.|++|++++|..
T Consensus       241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            34555566665555 33333333332 5566666655554 33222222 23355566666665543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.31  E-value=0.0021  Score=65.46  Aligned_cols=60  Identities=23%  Similarity=0.341  Sum_probs=27.7

Q ss_pred             CCCCCEEECCCCCCCCCChHhhhCCCCCcEEEccCC--CCCCCcChhhcCCCCCCEEECCCCCC
Q 001612          234 LQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHS--RLNGTFPEKILQVHTLETLDLSGNSL  295 (1044)
Q Consensus       234 l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~Ls~n~~  295 (1044)
                      +..|+.|++.+..++..  ..|-.+++|+.|.++.|  ++++.++.....+++|++|++++|++
T Consensus        42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki  103 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI  103 (260)
T ss_pred             ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence            33444444444333322  22334555566666665  44433443334445555555555554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.17  E-value=0.001  Score=78.88  Aligned_cols=138  Identities=27%  Similarity=0.258  Sum_probs=77.5

Q ss_pred             CCCCCCEEEcCCCCCCCC--CCccccCCCCCcEEecCCCCCCCCCcccCCCChhHHhhccccCceecCCCcc-CCCchhh
Q 001612          125 SLTNLTNLNLSNAGFAGQ--IPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGAN-ISAPGIE  201 (1044)
Q Consensus       125 ~l~~L~~L~Ls~~~~~~~--lp~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~-l~~~~~~  201 (1044)
                      .+++|+.|.+.++.-...  +-.....++.|+.|+++++.....   ............+++|++|+++.+. +++.+..
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~  262 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLIT---LSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS  262 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccc---cchhHhhhhhhhcCCcCccchhhhhccCchhHH
Confidence            367777777777644333  223445677777777776311000   0011112245566778888888776 6666654


Q ss_pred             hHHHHhccCCCceEEecCCCC-CCCCCc-ccccCCCCCCEEECCCCCCCCC--ChHhhhCCCCCcEEEccC
Q 001612          202 WCQALSSLVPKLQVLSLSSCY-LSGPIH-PSLAKLQSLSVIRLDQNDLLSP--VPEFLADFFNLTSLRLSH  268 (1044)
Q Consensus       202 ~~~~l~~~~~~L~~L~Ls~n~-l~~~~~-~~l~~l~~L~~L~Ls~n~~~~~--~~~~l~~l~~L~~L~L~~  268 (1044)
                      ++.   ..|++|++|.+.+|. ++...- .....++.|++|+++++.....  +.....++++|+.|.+..
T Consensus       263 ~l~---~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~  330 (482)
T KOG1947|consen  263 ALA---SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS  330 (482)
T ss_pred             HHH---hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence            443   335788888877776 443322 2234577788888887765321  223344566666655443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.34  E-value=0.0017  Score=66.00  Aligned_cols=87  Identities=28%  Similarity=0.249  Sum_probs=59.4

Q ss_pred             cccEEEccCCCCcCCCCccCCCCCcEEECCCCcCCCCCChhHhhhcccccceeecccccccCccCCcccCCCCCCceEEc
Q 001612          526 QVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDL  605 (1044)
Q Consensus       526 ~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~l  605 (1044)
                      +.++|++.+|.+..+.-...++.|+.|.||-|+|+..-|-  ..+.  .|+.|+|..|.|.++...+-+.++++|+.|.|
T Consensus        20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl--~rCt--rLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPL--QRCT--RLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhH--HHHH--HHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            4556666666666665566677777777777777644332  2232  37777777777777766556778899999999


Q ss_pred             CCCcccCCCCC
Q 001612          606 HSNQLQGNIPY  616 (1044)
Q Consensus       606 ~~n~l~~~~~~  616 (1044)
                      ..|+-.|.-+.
T Consensus        96 ~ENPCc~~ag~  106 (388)
T KOG2123|consen   96 DENPCCGEAGQ  106 (388)
T ss_pred             ccCCcccccch
Confidence            99988765543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.13  E-value=0.0085  Score=36.38  Aligned_cols=19  Identities=53%  Similarity=0.717  Sum_probs=9.5

Q ss_pred             CCEEeCCCCccccccCcccc
Q 001612          914 LESLDLSMNHLSGQIPIQLA  933 (1044)
Q Consensus       914 L~~L~ls~N~l~g~~p~~~~  933 (1044)
                      |+.|||++|+++ .+|.+|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            445555555555 4444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.93  E-value=0.0014  Score=66.58  Aligned_cols=80  Identities=26%  Similarity=0.270  Sum_probs=40.8

Q ss_pred             CCCCCcEEeCcCCcccCCCCcccCCCcccEEEccCCCCCCCCCchhhhcCCCccEEEeecCcCCCCCCcc-----cCCCc
Q 001612          353 NLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGS-----LFSLP  427 (1044)
Q Consensus       353 ~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~-----l~~l~  427 (1044)
                      .|+.|+.|.|+-|+++. +..+..+++|++|+|..|.+...-.-..+.++++|+.|.|..|.-.+..+..     +.-+|
T Consensus        39 kMp~lEVLsLSvNkIss-L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LP  117 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISS-LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLP  117 (388)
T ss_pred             hcccceeEEeecccccc-chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcc
Confidence            44444555555444442 2223334445555555554442222234667777788877777766544432     23356


Q ss_pred             ccceee
Q 001612          428 MLQQLQ  433 (1044)
Q Consensus       428 ~L~~L~  433 (1044)
                      +|++||
T Consensus       118 nLkKLD  123 (388)
T KOG2123|consen  118 NLKKLD  123 (388)
T ss_pred             cchhcc
Confidence            666553

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.54  E-value=0.018  Score=34.90  Aligned_cols=20  Identities=30%  Similarity=0.574  Sum_probs=10.2

Q ss_pred             ceEEEccCCcccccCCcccCC
Q 001612          866 FTSIDFSRNNFDGPIPEEIGR  886 (1044)
Q Consensus       866 l~~LdLs~N~l~g~ip~~~~~  886 (1044)
                      |+.|||++|+++ .||.+|++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTTT
T ss_pred             ccEEECCCCcCE-eCChhhcC
Confidence            445555555555 45544443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.95  E-value=0.00071  Score=77.89  Aligned_cols=170  Identities=27%  Similarity=0.293  Sum_probs=82.9

Q ss_pred             hHHhhccccCceecCCCccCCCchhhhHHHHhccC-CCceEEecCCCCCCCCC----cccccCCCCCCEEECCCCCCCC-
Q 001612          176 SGLLQNLAELRELYLDGANISAPGIEWCQALSSLV-PKLQVLSLSSCYLSGPI----HPSLAKLQSLSVIRLDQNDLLS-  249 (1044)
Q Consensus       176 ~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~~~-~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~Ls~n~~~~-  249 (1044)
                      ...+.....|+.|++++|.+.+.+...+....... ..+++|++..|.++...    ...+.....++.++++.|.+.. 
T Consensus       108 ~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~  187 (478)
T KOG4308|consen  108 AQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIEL  187 (478)
T ss_pred             HHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchh
Confidence            33455556666666666666655544443332221 34555666666555432    2334445566666666665421 


Q ss_pred             ---CChHhh----hCCCCCcEEEccCCCCCCCcC----hhhcCCCCCCEEECCCCCCCCCCCCCCCCCCCCcEEEccCCc
Q 001612          250 ---PVPEFL----ADFFNLTSLRLSHSRLNGTFP----EKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTN  318 (1044)
Q Consensus       250 ---~~~~~l----~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~  318 (1044)
                         .++..+    ....++++|.+.+|.++...-    ..+...+.                       .+..|++..|.
T Consensus       188 g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~-----------------------~~~el~l~~n~  244 (478)
T KOG4308|consen  188 GLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGES-----------------------LLRELDLASNK  244 (478)
T ss_pred             hhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccch-----------------------hhHHHHHHhcC
Confidence               111122    234556666666665542111    11222222                       13334444444


Q ss_pred             CCcc----CcccccCC-CCCCEEeccCccCCCCC----chhhcCCCCCcEEeCcCCccc
Q 001612          319 FSGV----LPDSIGNL-KNLSRLDLALCYFDGSI----PTSLANLTQLVYLDLSFNKFV  368 (1044)
Q Consensus       319 l~~~----~p~~l~~l-~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~L~~n~l~  368 (1044)
                      +.+.    ....+..+ ..+++++++.|.++...    ...+..++.++++.++.|.+.
T Consensus       245 l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  245 LGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             cchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            4322    12233333 55667777777665433    334455667777777777664

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.72  E-value=0.002  Score=74.20  Aligned_cols=190  Identities=27%  Similarity=0.269  Sum_probs=86.4

Q ss_pred             CCcccCCCCCCCCCC---CCCcCCCCCCCCEEEcCCCCCCCCCCccc----cCC-CCCcEEecCCCCCCCCCcccCCCCh
Q 001612          104 LQSLNLAFNMFNATE---IPSGLGSLTNLTNLNLSNAGFAGQIPIQV----SGM-TRLVTLDLSSLNRFGAPLKLENPNL  175 (1044)
Q Consensus       104 L~~LdLs~n~~~~~~---lp~~l~~l~~L~~L~Ls~~~~~~~lp~~l----~~l-~~L~~L~ls~n~~~~~~~~~~~~~l  175 (1044)
                      +..|+|.+|.+....   +...+.....|..|++++|.+.+.--..+    ... ..|++|++..|.++...    ...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g----~~~l  164 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEG----AAPL  164 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccc----hHHH
Confidence            455555555444321   11334445555555555555543211111    111 23444555444432211    1223


Q ss_pred             hHHhhccccCceecCCCccCCCchhhhH-HHHhc---cCCCceEEecCCCCCCCCC----cccccCCCC-CCEEECCCCC
Q 001612          176 SGLLQNLAELRELYLDGANISAPGIEWC-QALSS---LVPKLQVLSLSSCYLSGPI----HPSLAKLQS-LSVIRLDQND  246 (1044)
Q Consensus       176 ~~~l~~l~~L~~L~l~~~~l~~~~~~~~-~~l~~---~~~~L~~L~Ls~n~l~~~~----~~~l~~l~~-L~~L~Ls~n~  246 (1044)
                      .+.+.....+++++++.|.+...+.... ..+.+   ...++++|++++|.++...    ...+...+. +..+++..|.
T Consensus       165 ~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~  244 (478)
T KOG4308|consen  165 AAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK  244 (478)
T ss_pred             HHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC
Confidence            3334445555555555555443332221 11111   1245566666665554221    122333344 5556666665


Q ss_pred             CCCCC----hHhhhCC-CCCcEEEccCCCCCCCcC----hhhcCCCCCCEEECCCCCCCC
Q 001612          247 LLSPV----PEFLADF-FNLTSLRLSHSRLNGTFP----EKILQVHTLETLDLSGNSLLQ  297 (1044)
Q Consensus       247 ~~~~~----~~~l~~l-~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~Ls~n~~~~  297 (1044)
                      +....    ...+... ..+++++++.|.++....    ..+..++.++++.++.|.+..
T Consensus       245 l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  245 LGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             cchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            54331    1223333 456777777777664433    334456677777777776543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.24  E-value=0.0085  Score=59.48  Aligned_cols=82  Identities=18%  Similarity=0.103  Sum_probs=70.4

Q ss_pred             CCeEEEeCCCCCccCccCCCCCcccCCCCCcccCCCCCCCCCCCCCcCCCCCCCCEEEcCCCCCCCCCCccccCCCCCcE
Q 001612           76 GRVIGLDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVT  155 (1044)
Q Consensus        76 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~LdLs~n~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~  155 (1044)
                      .||+.||++++.+...-   ..+..++.|..||+|.|.+.-  +|+.++....++++++.+|..+ ..|.+.++++++++
T Consensus        42 kr~tvld~~s~r~vn~~---~n~s~~t~~~rl~~sknq~~~--~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~  115 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLVNLG---KNFSILTRLVRLDLSKNQIKF--LPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK  115 (326)
T ss_pred             ceeeeehhhhhHHHhhc---cchHHHHHHHHHhccHhhHhh--ChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence            68999999998765321   256778999999999998865  8999999999999999999887 89999999999999


Q ss_pred             EecCCCCC
Q 001612          156 LDLSSLNR  163 (1044)
Q Consensus       156 L~ls~n~~  163 (1044)
                      +++.++.+
T Consensus       116 ~e~k~~~~  123 (326)
T KOG0473|consen  116 NEQKKTEF  123 (326)
T ss_pred             hhhccCcc
Confidence            99988764

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=87.81  E-value=0.021  Score=56.84  Aligned_cols=84  Identities=18%  Similarity=0.185  Sum_probs=68.0

Q ss_pred             cCcceEEEccCCcccccCCcccCCCCCCCEEeCCCCCCcCCCcccccCcCCCCEEeCCCCccccccCccccCCCCCcEEE
Q 001612          863 LSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLN  942 (1044)
Q Consensus       863 l~~l~~LdLs~N~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~  942 (1044)
                      ....+.||++.|++-. .-..|.-++.+..|++|.|.+. ..|..++.+..+..+++..|.++ ..|.++...+.+++++
T Consensus        41 ~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            4566788999988763 3445667788888999988887 78888888888888998888887 7788888889999888


Q ss_pred             CcCCccc
Q 001612          943 LSHNNLV  949 (1044)
Q Consensus       943 l~~N~l~  949 (1044)
                      +-.|.+.
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            8888763

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=86.13  E-value=0.47  Score=26.65  Aligned_cols=14  Identities=36%  Similarity=0.600  Sum_probs=4.9

Q ss_pred             ccEEEccCCCCcCC
Q 001612          527 VRTLRLASCKLRVI  540 (1044)
Q Consensus       527 L~~L~L~~n~l~~l  540 (1044)
                      |+.|++++|+++.+
T Consensus         3 L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    3 LRTLDLSNNRLTSL   16 (17)
T ss_dssp             -SEEEETSS--SSE
T ss_pred             cCEEECCCCCCCCC
Confidence            44444444444433

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.75  E-value=0.26  Score=48.53  Aligned_cols=41  Identities=34%  Similarity=0.479  Sum_probs=22.1

Q ss_pred             HHHhccCCCceEEecCCC-CCCCCCcccccCCCCCCEEECCC
Q 001612          204 QALSSLVPKLQVLSLSSC-YLSGPIHPSLAKLQSLSVIRLDQ  244 (1044)
Q Consensus       204 ~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~  244 (1044)
                      +.+....++|+.|++++| +|+...-..+..+++|+.|.+.+
T Consensus       144 ~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  144 ERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD  185 (221)
T ss_pred             HHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence            333334466777777766 45444444455555555555543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=80.91  E-value=1.2  Score=28.07  Aligned_cols=14  Identities=57%  Similarity=0.691  Sum_probs=7.1

Q ss_pred             CCCCEEeCCCCccc
Q 001612          912 QQLESLDLSMNHLS  925 (1044)
Q Consensus       912 ~~L~~L~ls~N~l~  925 (1044)
                      ++|+.|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34555555555554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=80.91  E-value=1.2  Score=28.07  Aligned_cols=14  Identities=57%  Similarity=0.691  Sum_probs=7.1

Q ss_pred             CCCCEEeCCCCccc
Q 001612          912 QQLESLDLSMNHLS  925 (1044)
Q Consensus       912 ~~L~~L~ls~N~l~  925 (1044)
                      ++|+.|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34555555555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1044
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		5e-30
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		5e-30
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-17
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		8e-15
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-08
2z64_A	599	Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Comp		4e-08
3vq1_A	606	Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLE		4e-08
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		5e-07
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		6e-07
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		5e-06
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		6e-06
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		2e-05
4fcg_A	328	Structure Of The Leucine-Rich Repeat Domain Of The		4e-05
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		2e-04
2z7x_B	520	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		2e-04
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		2e-04
4ecn_A	876	Crystal Structure Of A Leucine-Rich Repeat Protein		2e-04
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		4e-04
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		4e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  130 bits (326), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 183/712 (25%), Positives = 286/712 (40%), Gaps = 90/712 (12%)
Query: 313 MLSNTNFSGVLPDSIGNLK---NLSRLDLALCYFDGSIPT--SLANLTQLVYLDLSFN-- 365
            LSN++ +G    S+   K   +L+ LDL+     G + T  SL + + L +L++S N  
Sbjct: 80  FLSNSHING----SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL 135
Query: 366 KFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDW---EHLSNLVYVDLRYNSLNGSIPGS 422
            F G +       +L  LDLS N++ GA +   W   +    L ++ +  N ++G +  S
Sbjct: 136 DFPGKVSGGLKLNSLEVLDLSANSISGA-NVVGWVLSDGCGELKHLAISGNKISGDVDVS 194
Query: 423 LFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILI 482
                 L+ L ++ N F   IP   + S  AL  +D+SGN+L G    +I     LK+L 
Sbjct: 195 --RCVNLEFLDVSSNNFSTGIPFLGDCS--ALQHLDISGNKLSGDFSRAISTCTELKLLN 250
Query: 483 LSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPN 542
           +SSN+  G +    ++ L  L+  E             + F  ++      +C       
Sbjct: 251 ISSNQFVGPIPPLPLKSLQYLSLAE-------------NKFTGEIPDFLSGACD------ 291
Query: 543 LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVXXXXXXXXXXXXXXXXRPF-SISDLSPIT 601
                 L  LDLS N   G +P +    G+                  P  ++  +  + 
Sbjct: 292 -----TLTGLDLSGNHFYGAVPPF---FGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 343
Query: 602 VLDLHSNQLQGNIPYP----PPKAVLVDYSNNSFTSSI-PDDIGXXXXXXXXXXXXXXXI 656
           VLDL  N+  G +P          + +D S+N+F+  I P+                   
Sbjct: 344 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 403
Query: 657 TGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGN 716
           TG IP TL     L+ L LS N LSG +P+ L  +S+ L  L L  N L G +       
Sbjct: 404 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK-LRDLKLWLNMLEGEIPQELMYV 462
Query: 717 CGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENIXXXXXXXXXXNS 776
             L TL L+ N L G +P  L+NC NL  + L NN++    P W+  +          NS
Sbjct: 463 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 522
Query: 777 FYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNF----KDV 832
           F GNI   E GD    L  +DL +N F G +P        AM     +  +NF    + V
Sbjct: 523 FSGNIPA-ELGDCR-SLIWLDLNTNLFNGTIP-------AAMFKQSGKIAANFIAGKRYV 573
Query: 833 HFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHG 892
           + +   +    +     +  +G+  E +  LS     + +   + G          S+  
Sbjct: 574 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 633
Query: 893 LNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQXXXXXXXXXXXXXXXXXVGKI 952
           L++S N L+G IP  IG++  L  L+L  N +SG IP +                  G+I
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 953 PIST------------------------QLQSFLATSFEGNKGLCGPPLNVC 980
           P +                         Q ++F    F  N GLCG PL  C
Sbjct: 694 PQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRC 745

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  130 bits (326), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 183/712 (25%), Positives = 286/712 (40%), Gaps = 90/712 (12%)
Query: 313 MLSNTNFSGVLPDSIGNLK---NLSRLDLALCYFDGSIPT--SLANLTQLVYLDLSFN-- 365
            LSN++ +G    S+   K   +L+ LDL+     G + T  SL + + L +L++S N  
Sbjct: 83  FLSNSHING----SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL 138
Query: 366 KFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDW---EHLSNLVYVDLRYNSLNGSIPGS 422
            F G +       +L  LDLS N++ GA +   W   +    L ++ +  N ++G +  S
Sbjct: 139 DFPGKVSGGLKLNSLEVLDLSANSISGA-NVVGWVLSDGCGELKHLAISGNKISGDVDVS 197
Query: 423 LFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILI 482
                 L+ L ++ N F   IP   + S  AL  +D+SGN+L G    +I     LK+L 
Sbjct: 198 --RCVNLEFLDVSSNNFSTGIPFLGDCS--ALQHLDISGNKLSGDFSRAISTCTELKLLN 253
Query: 483 LSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPN 542
           +SSN+  G +    ++ L  L+  E             + F  ++      +C       
Sbjct: 254 ISSNQFVGPIPPLPLKSLQYLSLAE-------------NKFTGEIPDFLSGACD------ 294
Query: 543 LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVXXXXXXXXXXXXXXXXRPF-SISDLSPIT 601
                 L  LDLS N   G +P +    G+                  P  ++  +  + 
Sbjct: 295 -----TLTGLDLSGNHFYGAVPPF---FGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346
Query: 602 VLDLHSNQLQGNIPYP----PPKAVLVDYSNNSFTSSI-PDDIGXXXXXXXXXXXXXXXI 656
           VLDL  N+  G +P          + +D S+N+F+  I P+                   
Sbjct: 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406
Query: 657 TGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGN 716
           TG IP TL     L+ L LS N LSG +P+ L  +S+ L  L L  N L G +       
Sbjct: 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK-LRDLKLWLNMLEGEIPQELMYV 465
Query: 717 CGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENIXXXXXXXXXXNS 776
             L TL L+ N L G +P  L+NC NL  + L NN++    P W+  +          NS
Sbjct: 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525
Query: 777 FYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNF----KDV 832
           F GNI   E GD    L  +DL +N F G +P        AM     +  +NF    + V
Sbjct: 526 FSGNIPA-ELGDCR-SLIWLDLNTNLFNGTIPA-------AMFKQSGKIAANFIAGKRYV 576
Query: 833 HFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHG 892
           + +   +    +     +  +G+  E +  LS     + +   + G          S+  
Sbjct: 577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636
Query: 893 LNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQXXXXXXXXXXXXXXXXXVGKI 952
           L++S N L+G IP  IG++  L  L+L  N +SG IP +                  G+I
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 953 PIST------------------------QLQSFLATSFEGNKGLCGPPLNVC 980
           P +                         Q ++F    F  N GLCG PL  C
Sbjct: 697 PQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRC 748

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/229 (33%), Positives = 115/229 (50%), Gaps = 12/229 (5%)
Query: 226 PIHPSLAKLQSLSVIRLDQ-NDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHT 284
           PI  SLA L  L+ + +   N+L+ P+P  +A    L  L ++H+ ++G  P+ + Q+ T
Sbjct: 67  PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 285 LETLDLSGNSLLQGSLPDFPKNSSLRTLM---LSNTNFSGVLPDSIGNLKNL-SRLDLAL 340
           L TLD S N+L  G+LP  P  SSL  L+         SG +PDS G+   L + + ++ 
Sbjct: 127 LVTLDFSYNAL-SGTLP--PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183
Query: 341 CYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMS-KNLTHLDLSYNALPGAISSTDW 399
               G IP + ANL  L ++DLS N   G    L  S KN   + L+ N+L   +     
Sbjct: 184 NRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL 242
Query: 400 EHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSN 448
               NL  +DLR N + G++P  L  L  L  L ++ N   G IP+  N
Sbjct: 243 SK--NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN 289

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 79.7 bits (195), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 87/268 (32%), Positives = 133/268 (49%), Gaps = 18/268 (6%)
Query: 307 SSLRTLMLSNTNFSGVLPDS------IGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYL 360
           S L T    N  + GVL D+      + NL +LS L+L   Y    IP+SLANL  L +L
Sbjct: 26  SWLPTTDCCNRTWLGVLCDTDTQTYRVNNL-DLSGLNLPKPY---PIPSSLANLPYLNFL 81
Query: 361 DLS-FNKFVGPIP-SLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGS 418
            +   N  VGPIP ++     L +L +++  + GAI       +  LV +D  YN+L+G+
Sbjct: 82  YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVTLDFSYNALSGT 140
Query: 419 IPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNL 478
           +P S+ SLP L  +    N+  G IP+   + S    ++ +S NRL G IP +  +L NL
Sbjct: 141 LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NL 199
Query: 479 KILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLR 538
             + LS N L G   +       N  K+ L+ N+L  + G        +  L L + ++ 
Sbjct: 200 AFVDLSRNMLEGDASV-LFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIY 257
Query: 539 -VIPNLKNQSK-LFNLDLSDNQISGEIP 564
             +P    Q K L +L++S N + GEIP
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 127/323 (39%), Gaps = 80/323 (24%)
Query: 660 IPETLCRAKYLLVLDLSK-NKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCG 718
           IP +L    YL  L +   N L G +P  + K+++ L  L +   ++SG +         
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ-LHYLYITHTNVSGAIPDFLSQIKT 126
Query: 719 LHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENIXXXXXXXXXXNSFY 778
           L TLD + N L GT+P S+++  NLV +    N+I    P                   Y
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP-----------------DSY 169
Query: 779 GNISCRENGDSWPKL-QIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFL 837
           G         S+ KL   + ++ N   G++P                    F +++  F+
Sbjct: 170 G---------SFSKLFTSMTISRNRLTGKIPPT------------------FANLNLAFV 202
Query: 838 KIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQ 897
            ++    +   +V   G +    KI     S+ F           ++G  K+L+GL+L  
Sbjct: 203 DLSRNMLEGDASVLF-GSDKNTQKIHLAKNSLAFDLG--------KVGLSKNLNGLDLRN 253
Query: 898 NALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQXXXXXXXXXXXXXXXXXVGKIPISTQ 957
           N + G +P  +  L+ L SL++S N+L G+IP                            
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ------------------------GGN 289
Query: 958 LQSFLATSFEGNKGLCGPPLNVC 980
           LQ F  +++  NK LCG PL  C
Sbjct: 290 LQRFDVSAYANNKCLCGSPLPAC 312

>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex Length = 599

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 110/433 (25%), Positives = 180/433 (41%), Gaps = 60/433 (13%)
Query: 140 AGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRE-----LYLDGAN 194
           + ++P   S +T LV +DLS            N   +  + +L  LRE     L LD   
Sbjct: 137 SCKLPAYFSNLTNLVHVDLSY-----------NYIQTITVNDLQFLRENPQVNLSLD--- 182
Query: 195 ISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPS-LAKLQSLSVIRL------DQNDL 247
           +S   I++ Q  +    KL  L+L   + S  I  + L  L  L V RL      D+ +L
Sbjct: 183 MSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 242
Query: 248 LSPVPEFLADFFNLT--SLRLSHSRLNGTFPEKILQVHTL---ETLDLSGNSLLQGSLPD 302
               P  +    ++T    RL+++     F + I++ H L     + L+G S+    L D
Sbjct: 243 EIFEPSIMEGLCDVTIDEFRLTYT---NDFSDDIVKFHCLANVSAMSLAGVSI--KYLED 297
Query: 303 FPKNSSLRTLM-------------------LSNTNFSGVLPDSIGNLKNLSRLDLA--LC 341
            PK+   ++L                    L+ T   G +      L +LS LDL+    
Sbjct: 298 VPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNAL 357
Query: 342 YFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEH 401
            F G    S      L +LDLSFN  +    +    + L HLD  ++ L      + +  
Sbjct: 358 SFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLS 417
Query: 402 LSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSG 461
           L  L+Y+D+ Y +      G    L  L  L++A N F         A+++ L  +DLS 
Sbjct: 418 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 477
Query: 462 NRLEGPIPMSIFD-LRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSD 520
            +LE  I   +FD L  L++L +S N L   +  +   +L++L+ L+ S+N +  + G  
Sbjct: 478 CQLE-QISWGVFDTLHRLQLLNMSHNNL-LFLDSSHYNQLYSLSTLDCSFNRIETSKGIL 535
Query: 521 SSFPSQVRTLRLA 533
             FP  +    L 
Sbjct: 536 QHFPKSLAFFNLT 548

>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX Length = 606

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 110/433 (25%), Positives = 180/433 (41%), Gaps = 60/433 (13%)
Query: 140 AGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRE-----LYLDGAN 194
           + ++P   S +T LV +DLS            N   +  + +L  LRE     L LD   
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSY-----------NYIQTITVNDLQFLRENPQVNLSLD--- 187
Query: 195 ISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPS-LAKLQSLSVIRL------DQNDL 247
           +S   I++ Q  +    KL  L+L   + S  I  + L  L  L V RL      D+ +L
Sbjct: 188 MSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247
Query: 248 LSPVPEFLADFFNLT--SLRLSHSRLNGTFPEKILQVHTL---ETLDLSGNSLLQGSLPD 302
               P  +    ++T    RL+++     F + I++ H L     + L+G S+    L D
Sbjct: 248 EIFEPSIMEGLCDVTIDEFRLTYT---NDFSDDIVKFHCLANVSAMSLAGVSI--KYLED 302
Query: 303 FPKNSSLRTLM-------------------LSNTNFSGVLPDSIGNLKNLSRLDLA--LC 341
            PK+   ++L                    L+ T   G +      L +LS LDL+    
Sbjct: 303 VPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNAL 362
Query: 342 YFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEH 401
            F G    S      L +LDLSFN  +    +    + L HLD  ++ L      + +  
Sbjct: 363 SFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLS 422
Query: 402 LSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSG 461
           L  L+Y+D+ Y +      G    L  L  L++A N F         A+++ L  +DLS 
Sbjct: 423 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482
Query: 462 NRLEGPIPMSIFD-LRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSD 520
            +LE  I   +FD L  L++L +S N L   +  +   +L++L+ L+ S+N +  + G  
Sbjct: 483 CQLE-QISWGVFDTLHRLQLLNMSHNNL-LFLDSSHYNQLYSLSTLDCSFNRIETSKGIL 540
Query: 521 SSFPSQVRTLRLA 533
             FP  +    L 
Sbjct: 541 QHFPKSLAFFNLT 553

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 134/292 (45%), Gaps = 7/292 (2%)
Query: 211 PKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDL-LSPVPEFLADFFNLTSLRLSHS 269
           P L+ L L+   +S     +   L +L  + L  N L L P+  F     NLT L +S +
Sbjct: 56  PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVF-TGLSNLTKLDISEN 114
Query: 270 RLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGN 329
           ++          ++ L++L++  N L+  S   F   +SL  L L   N + +  +++ +
Sbjct: 115 KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH 174
Query: 330 LKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPI-PSLHMSKNLTHLDLSYN 388
           L  L  L L     +     S   L +L  L++S   ++  + P+     NLT L +++ 
Sbjct: 175 LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234
Query: 389 ALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGS-LFSLPMLQQLQLAENKFGGLIPEFS 447
            L  A+      HL  L +++L YN ++ +I GS L  L  LQ++QL   +   + P ++
Sbjct: 235 NL-TAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEP-YA 291
Query: 448 NASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQR 499
               + L  +++SGN+L          + NL+ LIL SN L    +L  + R
Sbjct: 292 FRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFR 343

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 3/170 (1%)
Query: 343 FDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHL 402
           F G    S    T L YLDLSFN  +    +    + L HLD  ++ L      + +  L
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420
Query: 403 SNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFG-GLIPEFSNASSSALDTIDLSG 461
            NL+Y+D+ +     +  G    L  L+ L++A N F    +P+      + L  +DLS 
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN-LTFLDLSQ 479
Query: 462 NRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYN 511
            +LE   P +   L +L++L ++SN+L  +V      RL +L K+ L  N
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTN 528

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 90/194 (46%), Gaps = 6/194 (3%)
Query: 343 FDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHL 402
           F G    S    T L YLDLSFN  +    +    + L HLD  ++ L      + +  L
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125
Query: 403 SNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFG-GLIPE-FSNASSSALDTIDLS 460
            NL+Y+D+ +     +  G    L  L+ L++A N F    +P+ F+   +  L  +DLS
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN--LTFLDLS 183
Query: 461 GNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSD 520
             +LE   P +   L +L++L +S N    ++     + L++L  L+ S N++  +   +
Sbjct: 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242
Query: 521 -SSFPSQVRTLRLA 533
              FPS +  L L 
Sbjct: 243 LQHFPSSLAFLNLT 256

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 4/193 (2%)
Query: 343 FDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHL 402
           F G    S    T L YLDLSFN  +    +    + L HLD  ++ L      + +  L
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420
Query: 403 SNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFG-GLIPEFSNASSSALDTIDLSG 461
            NL+Y+D+ +     +  G    L  L+ L++A N F    +P+      + L  +DLS 
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN-LTFLDLSQ 479
Query: 462 NRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSD- 520
            +LE   P +   L +L++L +S N    ++     + L++L  L+ S N++  +   + 
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 538
Query: 521 SSFPSQVRTLRLA 533
             FPS +  L L 
Sbjct: 539 QHFPSSLAFLNLT 551

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 87/193 (45%), Gaps = 4/193 (2%)
Query: 343 FDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHL 402
           F G    S      L YLDLSFN  +    +    + L HLD  ++ L      + +  L
Sbjct: 385 FKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 444
Query: 403 SNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFG-GLIPEFSNASSSALDTIDLSG 461
            NL+Y+D+ +     +  G    L  L+ L++A N F    +P+      + L  +DLS 
Sbjct: 445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN-LTFLDLSQ 503
Query: 462 NRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSD- 520
            +LE   P +   L +L++L +S N    ++     + L++L  L+ S N++  +   + 
Sbjct: 504 CQLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 562
Query: 521 SSFPSQVRTLRLA 533
             FPS +  L L 
Sbjct: 563 QHFPSSLAFLNLT 575

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 75/155 (48%), Gaps = 17/155 (10%)
Query: 212 KLQVLSLSSC----YLSGPI--------HPSLAKLQSLSVIRLDQNDLLSPVPEFLADFF 259
           +L+ LS+ +C     L  P+        H  L  LQSL   RL+   + S +P  +A+  
Sbjct: 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL---RLEWTGIRS-LPASIANLQ 206
Query: 260 NLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNF 319
           NL SL++ +S L+   P  I  +  LE LDL G + L+   P F   + L+ L+L + + 
Sbjct: 207 NLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN 265
Query: 320 SGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANL 354
              LP  I  L  L +LDL  C     +P+ +A L
Sbjct: 266 LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 59/119 (49%), Gaps = 9/119 (7%)
Query: 381 THLDLSYNALPGAISSTD-WEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKF 439
           T L L+ N L G ISS   +  L +LV ++L+ N L G  P +      +Q+LQL ENK 
Sbjct: 32  TELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK- 89
Query: 440 GGLIPEFSNA---SSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLA 495
              I E SN        L T++L  N++   +P S   L +L  L L+SN  N    LA
Sbjct: 90  ---IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA 145

>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 520

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 95/423 (22%), Positives = 180/423 (42%), Gaps = 59/423 (13%)
Query: 356 QLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSL 415
           +L YLDLS NK V    S H + NL HLDLS+NA        ++ ++S L ++ L    L
Sbjct: 70  ELEYLDLSHNKLVKI--SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127
Query: 416 NGSIPGSLFSLPMLQQLQLAENKFGGLI-PE-FSNASSSALDTIDLSGNRLEGPIPMSIF 473
             S    +  L + + L +    +G    PE   + ++ +L  +  +       + +S+ 
Sbjct: 128 EKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVK 187
Query: 474 DLRNLKI----LILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRT 529
            + NL++     +L  NK   +  L+ + +L    KL    +NLT+N   ++++ S +R 
Sbjct: 188 TVANLELSNIKCVLEDNK--CSYFLSILAKLQTNPKL----SNLTLN-NIETTWNSFIRI 240
Query: 530 LRLA---SCKLRVIPNLKNQSKLFNLD----------LSDNQISGEI----PNWVWEIGN 572
           L+L    +     I N+K Q +L   D          LS +Q+  ++     ++++EI +
Sbjct: 241 LQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFS 300
Query: 573 VXXXXXXXXXXXXXXXXRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFT 632
                            + F++S    + +L           P      + +D+SNN  T
Sbjct: 301 -------------NMNIKNFTVSGTRMVHML----------CPSKISPFLHLDFSNNLLT 337
Query: 633 SSIPDDIGXXXXXXXXXXXXXXXIT-GVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKM 691
            ++ ++ G                    I E   + K L  LD+S+N +S          
Sbjct: 338 DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW 397
Query: 692 SEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNN 751
           ++ L  LN+  N L+ T+    P    +  LDL+ N++  ++PK +     L  L++ +N
Sbjct: 398 TKSLLSLNMSSNILTDTIFRCLPPR--IKVLDLHSNKI-KSIPKQVVKLEALQELNVASN 454
Query: 752 KIR 754
           +++
Sbjct: 455 QLK 457

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 106/409 (25%), Positives = 171/409 (41%), Gaps = 74/409 (18%)
Query: 227 IHPSLAKLQSLSVIRLDQNDL-------LSPVPEFLADFFNLTSLRLSHSRLNGTFPEKI 279
           +HPS  KL SL  I    N +       L P+      FF+L +  L +SR++  + + +
Sbjct: 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSL-YSRVSVDWGKCM 198
Query: 280 --LQVHTLETLDLSGNSL---LQGSLPDFPKNSSLRTLMLSNT------NFSGVLPDSIG 328
              +   LE LD+SGN     + G+  +    S   +L+L++        F  +      
Sbjct: 199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258
Query: 329 NLKNLSR-----LDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIP--SLHMSKNLT 381
               L+R     LDL+  +           L  L  L+L++NK +  I   + +   NL 
Sbjct: 259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INKIADEAFYGLDNLQ 317
Query: 382 HLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGG 441
            L+LSYN L G + S+++  L  + Y+DL+ N +      +   L  LQ L L +N    
Sbjct: 318 VLNLSYNLL-GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376
Query: 442 L--IPEFSNA--SSSALDT----------IDLSGNRLEGPIPMSIFDLR--NLKILILSS 485
           +  IP   +   S + L T          I LS NRLE  + +  F LR  +L+ILIL+ 
Sbjct: 377 IHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLEN-LDILYFLLRVPHLQILILNQ 435
Query: 486 NKLNGT---------------------VQLA--------AIQRLHNLAKLELSYNNLTVN 516
           N+ +                       +QLA          + L +L  L L++N L   
Sbjct: 436 NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL 495
Query: 517 AGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPN 565
                S  + +R L L S +L V+ +    + L  LD+S NQ+    P+
Sbjct: 496 PPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPD 544

>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein (Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At 2.80 A Resolution Length = 876

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 84/185 (45%), Gaps = 27/185 (14%)
Query: 399 WEHLSNLVYVDLRYNSLNGS-IPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTI 457
           W +L +L  V+L YN  N + +P  L+ LP LQ L +A N+  G+     +A+    D  
Sbjct: 487 WSNLKDLTDVEL-YNCPNXTQLPDFLYDLPELQSLNIACNR--GI-----SAAQLKADWT 538
Query: 458 DLSGNRLEGP-IPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHN-------------L 503
            L+ +   GP I +      NL+    S++ L   V+L  +  +HN             L
Sbjct: 539 RLADDEDTGPKIQIFYXGYNNLEEFPASAS-LQKXVKLGLLDCVHNKVRHLEAFGTNVKL 597
Query: 504 AKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLF---NLDLSDNQIS 560
             L+L YN +        +F  QV  L  +  KL+ IPN+ N   ++   ++D S N+I 
Sbjct: 598 TDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVXGSVDFSYNKIG 657
Query: 561 GEIPN 565
            E  N
Sbjct: 658 SEGRN 662

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 82/166 (49%), Gaps = 9/166 (5%)
Query: 403 SNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGL-IPEFSNASSSALDTIDLSG 461
           +N   ++L  N +      S   L  L+ LQL+ N    + I  F+  ++  L+T++L  
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLAN--LNTLELFD 121
Query: 462 NRLEGPIPMSIF-DLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSD 520
           NRL   IP   F  L  LK L L +N +  ++   A  R+ +L +L+L      ++  S+
Sbjct: 122 NRLTT-IPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELK-RLSYISE 178
Query: 521 SSFP--SQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIP 564
            +F   S +R L LA C LR IPNL    KL  LDLS N +S   P
Sbjct: 179 GAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRP 224

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 108/432 (25%), Positives = 170/432 (39%), Gaps = 79/432 (18%)
Query: 145 IQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIE-WC 203
           ++  G + L  LDLSS      PLK  +P   G  Q + +L  L L+ A ++    E  C
Sbjct: 165 LEFLGNSSLRKLDLSS-----NPLKEFSP---GCFQTIGKLFALLLNNAQLNPHLTEKLC 216
Query: 204 QALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLD--QNDLLSPVPEFLADFFNL 261
             LS+    +Q LSL++  L      + + L+  ++ +LD   N+L        +   +L
Sbjct: 217 WELSN--TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSL 274
Query: 262 TSLRLSHSRLNGTFPEKILQVHTLETLDL----SGNSLLQGSLPD-----FPKNSSLRTL 312
             L L ++ +    P     +  L  L L    +  S+   S P+     F     L  L
Sbjct: 275 RYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYL 334
Query: 313 MLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIP 372
            + + N      ++   L +L  L L+  +      TSL  LT   ++ L+      P+ 
Sbjct: 335 NMDDNNIPSTKSNTFTGLVSLKYLSLSKTF------TSLQTLTNETFVSLAH----SPLL 384
Query: 373 SLHMSKN---------------LTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNG 417
           +L+++KN               L  LDL  N +   +S  +W  L N+  + L YN    
Sbjct: 385 TLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQ 444
Query: 418 SIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRN 477
               S   +P LQ+L L                  AL  +D+S        P     LRN
Sbjct: 445 LSTSSFALVPSLQRLMLRR---------------VALKNVDIS--------PSPFRPLRN 481
Query: 478 LKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLT-----VNAGSDSSF---PSQVRT 529
           L IL LS+N +   +    ++ L NL  L+  +NNL       N G   +F    S +  
Sbjct: 482 LTILDLSNNNI-ANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHI 540
Query: 530 LRLASCKLRVIP 541
           L L S  L  IP
Sbjct: 541 LNLESNGLDEIP 552

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1044
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	0.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-130
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-105
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-73
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-101
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-86
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-84
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-84
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-37
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-80
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-76
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-67
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-67
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-53
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-49
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-77
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-62
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-59
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-37
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-30
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-70
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-61
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-58
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-57
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-56
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-70
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-69
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-66
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-58
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-46
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-68
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-67
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-65
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-63
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-54
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-48
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-33
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-56
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-49
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-48
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-47
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-47
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-42
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-40
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-51
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-49
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-46
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-46
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-43
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-39
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-37
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-32
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-27
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-51
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-46
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-44
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-44
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-41
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-37
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-37
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-31
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-44
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-37
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-43
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-43
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-36
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-30
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-30
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-30
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-39
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-37
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-35
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-27
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-38
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-35
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-35
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-33
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-30
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-34
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-30
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-33
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-32
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-32
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-32
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-32
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-32
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-27
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-31
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-30
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-31
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-26
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-22
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-30
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-20
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-29
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-28
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-25
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-24
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-29
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-27
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-27
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-26
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-26
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-21
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-26
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-26
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-25
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-21
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-20
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-18
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-18
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-16
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-16
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-14
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-12
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-11
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-10
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	9e-10
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	6e-10
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-08
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	5e-08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	8e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	9e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	9e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	4e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	7e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  556 bits (1435), Expect = 0.0
 Identities = 213/767 (27%), Positives = 321/767 (41%), Gaps = 87/767 (11%)

Query: 260 NLTSLRLSHSRLN---GTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSN 316
            +TS+ LS   LN         +L +  LE+L LS + +  GS+  F  ++SL +L LS 
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHI-NGSVSGFKCSASLTSLDLSR 109

Query: 317 TNFSGVLPD--SIGNLKNLSRLDLALCYFDGSIPTS-LANLTQLVYLDLSFNKFVGPIPS 373
            + SG +    S+G+   L  L+++    D     S    L  L  LDLS N   G    
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169

Query: 374 LHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQ 433
                                     +    L ++ +  N ++G +   +     L+ L 
Sbjct: 170 ---------------------GWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLD 206

Query: 434 LAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQ 493
           ++ N F   IP   + S+  L  +D+SGN+L G    +I     LK+L +SSN+  G + 
Sbjct: 207 VSSNNFSTGIPFLGDCSA--LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 264

Query: 494 LAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLD 553
                 L +L  L L+ N  T         P  +                     L  LD
Sbjct: 265 PL---PLKSLQYLSLAENKFT------GEIPDFL---------------SGACDTLTGLD 300

Query: 554 LSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGN 613
           LS N   G +P +        L+ L LS N  S      ++  +  + VLDL  N+  G 
Sbjct: 301 LSGNHFYGAVPPFFGSCSL--LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358

Query: 614 IP----YPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTL-FFSLSNNSITGVIPETLCRAK 668
           +P          + +D S+N+F+  I  ++      TL    L NN  TG IP TL    
Sbjct: 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418

Query: 669 YLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQ 728
            L+ L LS N LSG +P+ L  +S+ L  L L  N L G +         L TL L+ N 
Sbjct: 419 ELVSLHLSFNYLSGTIPSSLGSLSK-LRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477

Query: 729 LGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGD 788
           L G +P  L+NC NL  + L NN++    P W+  + +L +L L +NSF GNI   E G 
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA-ELG- 535

Query: 789 SWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDE---------------DEAQSNFKDVH 833
               L  +DL +N F G +P         + ++                 E       + 
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595

Query: 834 F------EFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRL 887
           F      +  +++     +  +    G              +D S N   G IP+EIG +
Sbjct: 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655

Query: 888 KSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNN 947
             L  LNL  N ++G IP  +G+L+ L  LDLS N L G+IP  ++ LT L+ ++LS+NN
Sbjct: 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715

Query: 948 LVGKIPISTQLQSFLATSFEGNKGLCGPPLNVCRTNSSKALPSSPAS 994
           L G IP   Q ++F    F  N GLCG PL  C  +++        S
Sbjct: 716 LSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRS 762

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  412 bits (1061), Expect = e-130
 Identities = 202/811 (24%), Positives = 307/811 (37%), Gaps = 146/811 (18%)

Query: 27  SGQCQSDQQSLLLQMKSSLVFNSSLSFRMVQWSQSNDCCTWSGVDCDEAGRVIGLDLSEE 86
             Q    +   L+  K  L   + L      WS + + CT+ GV C    +V  +DLS +
Sbjct: 6   PSQSLYREIHQLISFKDVLPDKNLLP----DWSSNKNPCTFDGVTCR-DDKVTSIDLSSK 60

Query: 87  SISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQ 146
            ++ G                           + S L SLT L +L LSN+   G +   
Sbjct: 61  PLNVGFS------------------------AVSSSLLSLTGLESLFLSNSHINGSVS-G 95

Query: 147 VSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQAL 206
                 L +LDLS              +LSG +  L  L                     
Sbjct: 96  FKCSASLTSLDLS------------RNSLSGPVTTLTSLGSC------------------ 125

Query: 207 SSLVPKLQVLSLSSCYLSGPIH-PSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLR 265
                 L+ L++SS  L  P       KL SL V+ L  N +                  
Sbjct: 126 ----SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE-- 179

Query: 266 LSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPD 325
                              L+ L +SGN  + G +    +  +L  L +S+ NFS  +P 
Sbjct: 180 -------------------LKHLAISGNK-ISGDVD-VSRCVNLEFLDVSSNNFSTGIP- 217

Query: 326 SIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDL 385
            +G+   L  LD++     G    +++  T+L  L++S N+FVGPIP L +  +L +L L
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLK-SLQYLSL 276

Query: 386 SYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPE 445
           + N   G I          L  +DL  N   G++P    S  +L+ L L+ N F G +P 
Sbjct: 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336

Query: 446 FSNASSSALDTIDLSGNRLEGPIPMSIFDLR-NLKILILSSNKLNGTVQLAAIQ-RLHNL 503
            +      L  +DLS N   G +P S+ +L  +L  L LSSN  +G +     Q   + L
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396

Query: 504 AKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEI 563
            +L L  N  T         P                P L N S+L +L LS N +SG I
Sbjct: 397 QELYLQNNGFT------GKIP----------------PTLSNCSELVSLHLSFNYLSGTI 434

Query: 564 PNWVWEIGNVSLQYLNLSHNLLS-SLQRPFSISDLSPITVLDLHSNQLQGNIPYP---PP 619
           P+ +  +    L+ L L  N+L   +  P  +  +  +  L L  N L G IP       
Sbjct: 435 PSSLGSLSK--LRDLKLWLNMLEGEI--PQELMYVKTLETLILDFNDLTGEIPSGLSNCT 490

Query: 620 KAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNK 679
               +  SNN  T  IP  IG   +      LSNNS +G IP  L   + L+ LDL+ N 
Sbjct: 491 NLNWISLSNNRLTGEIPKWIGRLENLA-ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549

Query: 680 LSGKMPTCLIKMSEILGVLNLRG---------------------NSLSGTLSVTFPGNCG 718
            +G +P  + K S  +    + G                         G  S        
Sbjct: 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609

Query: 719 LHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFY 778
            +  ++     GG    +  N  +++ LD+  N +    P  + ++  L +L L  N   
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669

Query: 779 GNISCRENGDSWPKLQIVDLASNNFGGRVPQ 809
           G+I   +       L I+DL+SN   GR+PQ
Sbjct: 670 GSIP--DEVGDLRGLNILDLSSNKLDGRIPQ 698

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  344 bits (886), Expect = e-105
 Identities = 152/650 (23%), Positives = 252/650 (38%), Gaps = 98/650 (15%)

Query: 328 GNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSY 387
             + ++      L     ++ +SL +LT L  L LS +   G +     S +LT LDLS 
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSR 109

Query: 388 NALPGAISSTDW-EHLSNLVYVDLRYNSLNGSIPGSLF-SLPMLQQLQLAENKFGGLIPE 445
           N+L G +++       S L ++++  N+L+     S    L  L+ L L+ N   G    
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169

Query: 446 --FSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNL 503
               +     L  + +SGN++ G +   +    NL+ L +SSN  +    +  +     L
Sbjct: 170 GWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTG--IPFLGDCSAL 225

Query: 504 AKLELSYNNLTVNAGSDSSFPSQV------RTLRLASCKLR-VIPNLKNQSKLFNLDLSD 556
             L++S N L+        F   +      + L ++S +    IP L     L  L L++
Sbjct: 226 QHLDISGNKLS------GDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAE 278

Query: 557 NQISGEIPNWVWEIGN-VSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIP 615
           N+ +GEIP+++   G   +L  L+LS N       P      S +  L L SN   G +P
Sbjct: 279 NKFTGEIPDFLS--GACDTLTGLDLSGNHFYG-AVPPFFGSCSLLESLALSSNNFSGELP 335

Query: 616 YPP----PKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCR--AKY 669
                      ++D S N F+  +P+ + N  +  L   LS+N+ +G I   LC+     
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 395

Query: 670 LLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQL 729
           L  L L  N  +GK+P  L   SE L  L+L  N LSGT+  +      L  L L  N L
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSE-LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454

Query: 730 GGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDS 789
            G +P+ L   + L  L L  N +    P  L N ++L  + L +N   G I        
Sbjct: 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP------K 508

Query: 790 W----PKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQ 845
           W      L I+ L++N+F G +P   +   +++                           
Sbjct: 509 WIGRLENLAILKLSNNSFSGNIP-AELGDCRSL--------------------------- 540

Query: 846 DAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIP 905
                                  +D + N F+G IP  + +        ++ N + G   
Sbjct: 541 ---------------------IWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRY 575

Query: 906 SAIGNLQQLESLDLSMN--HLSGQIPIQLANLTFLSFLNLSHNNLVGKIP 953
             I N    +    + N     G    QL  L+  +  N++     G   
Sbjct: 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  256 bits (657), Expect = 6e-73
 Identities = 138/491 (28%), Positives = 206/491 (41%), Gaps = 48/491 (9%)

Query: 81  LDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFA 140
           L L+E   +  I +     +   L  L+L+ N F    +P   GS + L +L LS+  F+
Sbjct: 274 LSLAENKFTGEIPDFL-SGACDTLTGLDLSGNHFYGA-VPPFFGSCSLLESLALSSNNFS 331

Query: 141 GQIPIQV-SGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPG 199
           G++P+     M  L  LDLS  N F   L     NLS      A L  L L   N S P 
Sbjct: 332 GELPMDTLLKMRGLKVLDLSF-NEFSGELPESLTNLS------ASLLTLDLSSNNFSGP- 383

Query: 200 I--EWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLAD 257
           I    CQ   +    LQ L L +   +G I P+L+    L  + L  N L   +P  L  
Sbjct: 384 ILPNLCQNPKN---TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS 440

Query: 258 FFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPD-FPKNSSLRTLMLSN 316
              L  L+L  + L G  P++++ V TLETL L  N  L G +P      ++L  + LSN
Sbjct: 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND-LTGEIPSGLSNCTNLNWISLSN 499

Query: 317 TNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPS-LH 375
              +G +P  IG L+NL+ L L+   F G+IP  L +   L++LDL+ N F G IP+ + 
Sbjct: 500 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559

Query: 376 MSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLA 435
                   +         I +     +    +         G     L  L       + 
Sbjct: 560 KQSGKIAANFIAGKRYVYIKNDG---MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 616

Query: 436 ENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLA 495
              +GG      + ++ ++  +D+S N L G IP  I  +  L IL L  N ++G++   
Sbjct: 617 SRVYGGHTSPTFD-NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP-D 674

Query: 496 AIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIP-NLKNQSKLFNLDL 554
            +  L  L  L+LS N L    G                     IP  +   + L  +DL
Sbjct: 675 EVGDLRGLNILDLSSNKLD---GR--------------------IPQAMSALTMLTEIDL 711

Query: 555 SDNQISGEIPN 565
           S+N +SG IP 
Sbjct: 712 SNNNLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.9 bits (164), Expect = 2e-11
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)

Query: 885 GRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLS 944
            ++ S+   +   N     + S++ +L  LESL LS +H++G +         L+ L+LS
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLS 108

Query: 945 HNNLVGKIPISTQL 958
            N+L G +   T L
Sbjct: 109 RNSLSGPVTTLTSL 122

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  332 bits (853), Expect = e-101
 Identities = 140/690 (20%), Positives = 244/690 (35%), Gaps = 70/690 (10%)

Query: 284 TLETLDLSGNSLLQGSLPDFPKN--SSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALC 341
           + E  D S   L Q      P +  +++  L L++     +   +      L+ LD+   
Sbjct: 5   SHEVADCSHLKLTQ-----VPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 59

Query: 342 YFDGSIPTSLANLTQLVYLDLSFNKFVGPIP-SLHMSKNLTHLDLSYNALPGAISSTDWE 400
                 P     L  L  L+L  N+       +     NLT L L  N++    ++  + 
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP-FV 118

Query: 401 HLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPE-FSNASSSALDTIDL 459
              NL+ +DL +N L+ +  G+   L  LQ+L L+ NK   L  E     ++S+L  ++L
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178

Query: 460 SGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQ--LAAIQRLHNLAKLELSYNNLTVNA 517
           S N+++   P     +  L  L L++ +L  ++   L       ++  L LS + L+   
Sbjct: 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT- 237

Query: 518 GSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQY 577
            S+++F        L    L +            LDLS N ++    +         L+Y
Sbjct: 238 -SNTTFLG------LKWTNLTM------------LDLSYNNLNVVGNDSFA--WLPQLEY 276

Query: 578 LNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPD 637
             L +N +  L    S+  L  +  L+L  +  + +I            S  S       
Sbjct: 277 FFLEYNNIQHLF-SHSLHGLFNVRYLNLKRSFTKQSI------------SLASLPKIDDF 323

Query: 638 DIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEI--- 694
                       ++ +N I G+          L  L LS +  S +  T    +S     
Sbjct: 324 SFQWLKCLE-HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP 382

Query: 695 LGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKS-LANCRNLVVLDLGNNKI 753
           L +LNL  N +S   S  F     L  LDL  N++G  +         N+  + L  NK 
Sbjct: 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 442

Query: 754 RDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCIT 813
                     + SL+ L+LR  +     S          L I+DL++NN    +    + 
Sbjct: 443 LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN-INDDMLE 501

Query: 814 SWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSR 873
             + +                E L +            + G  +  +K LS    ++   
Sbjct: 502 GLEKL----------------EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545

Query: 874 NNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLA 933
           N FD    E    L  L  ++L  N L     S   N   L+SL+L  N ++        
Sbjct: 546 NGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG 605

Query: 934 -NLTFLSFLNLSHNNLVGKIPISTQLQSFL 962
                L+ L++  N             +++
Sbjct: 606 PAFRNLTELDMRFNPFDCTCESIAWFVNWI 635

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  290 bits (744), Expect = 8e-86
 Identities = 134/659 (20%), Positives = 235/659 (35%), Gaps = 74/659 (11%)

Query: 81  LDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFA 140
            D S   ++       P      +  LNL  N        +     + LT+L++     +
Sbjct: 9   ADCSHLKLT-----QVPDDLPTNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTIS 62

Query: 141 GQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGI 200
              P     +  L  L+L   N                      L EL+L   +I    I
Sbjct: 63  KLEPELCQKLPMLKVLNLQH-NELSQL-------SDKTFAFCTNLTELHLMSNSIQ--KI 112

Query: 201 EWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFN 260
           +           L  L LS   LS     +  +L++L  + L  N + +   E L  F N
Sbjct: 113 KN-NPFVKQ-KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN 170

Query: 261 --LTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSL---LQGSLPDFPKNSSLRTLMLS 315
             L  L LS +++    P     +  L  L L+   L   L   L     N+S+R L LS
Sbjct: 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230

Query: 316 NTNFSGVLPDSIGNLK--NLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPS 373
           N+  S     +   LK  NL+ LDL+    +     S A L QL Y  L +N        
Sbjct: 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH 290

Query: 374 ----------LHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSL 423
                     L++ ++ T   +S  +LP     + ++ L  L ++++  N + G      
Sbjct: 291 SLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS-FQWLKCLEHLNMEDNDIPGIKSNMF 349

Query: 424 FSLPMLQQLQLAENKFGGLIPE---FSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKI 480
             L  L+ L L+ +           F + + S L  ++L+ N++      +   L +L++
Sbjct: 350 TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409

Query: 481 LILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVI 540
           L L  N++   +     + L N+ ++ LSYN       +  +    ++ L L    L+ +
Sbjct: 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469

Query: 541 PN----LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQR------ 590
            +     +    L  LDLS+N I+    + +   G   L+ L+L HN L+ L +      
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLE--GLEKLEILDLQHNNLARLWKHANPGG 527

Query: 591 -PFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFF 649
             + +  LS + +L+L                      +N F     +   +        
Sbjct: 528 PIYFLKGLSHLHILNL---------------------ESNGFDEIPVEVFKDLFELK-II 565

Query: 650 SLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGT 708
            L  N++  +          L  L+L KN ++             L  L++R N    T
Sbjct: 566 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  285 bits (732), Expect = 5e-84
 Identities = 138/645 (21%), Positives = 222/645 (34%), Gaps = 57/645 (8%)

Query: 168 LKLENPNLSGLLQNLAE-LRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGP 226
               +  L+ +  +L   +  L L    +           +    +L  L +    +S  
Sbjct: 9   ADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAA---NFTRY-SQLTSLDVGFNTISKL 64

Query: 227 IHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLE 286
                 KL  L V+ L  N+L     +  A   NLT L L  + +        ++   L 
Sbjct: 65  EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124

Query: 287 TLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKN--LSRLDLALCYFD 344
           TLDLS N L    L    +  +L+ L+LSN     +  + +    N  L +L+L+     
Sbjct: 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184

Query: 345 GSIPTSLANLTQLVYLDLSFNKFVGPIPS----LHMSKNLTHLDLSYNALPGAISST-DW 399
              P     + +L  L L+  +    +         + ++ +L LS + L    ++T   
Sbjct: 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244

Query: 400 EHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPE-FSNAS-------S 451
              +NL  +DL YN+LN     S   LP L+   L  N    L                 
Sbjct: 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304

Query: 452 SALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYN 511
            +     +S   L      S   L+ L+ L +  N + G ++      L NL  L LS +
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNS 363

Query: 512 NLTVNAGSDSSFP----SQVRTLRLASCKLRVIPN--LKNQSKLFNLDLSDNQISGEIPN 565
             ++   ++ +F     S +  L L   K+  I +        L  LDL  N+I  E+  
Sbjct: 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423

Query: 566 WVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVD 625
             W  G  ++  + LS+N    L    S + +  +  L L    L+              
Sbjct: 424 QEWR-GLENIFEIYLSYNKYLQLT-RNSFALVPSLQRLMLRRVALKNVD----------- 470

Query: 626 YSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLS---- 681
                   S P       + T    LSNN+I  +  + L   + L +LDL  N L+    
Sbjct: 471 --------SSPSPFQPLRNLT-ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWK 521

Query: 682 ---GKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLA 738
                 P   +K    L +LNL  N         F     L  +DL  N L         
Sbjct: 522 HANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN 581

Query: 739 NCRNLVVLDLGNNKIRDTFPWWLE-NISSLRVLVLRSNSFYGNIS 782
           N  +L  L+L  N I             +L  L +R N F     
Sbjct: 582 NQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  284 bits (730), Expect = 9e-84
 Identities = 150/756 (19%), Positives = 253/756 (33%), Gaps = 135/756 (17%)

Query: 213 LQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLN 272
            +V   S   L+  +   L    +++V+ L  N L          +  LTSL +  + ++
Sbjct: 6   HEVADCSHLKLTQ-VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 273 GTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKN 332
              PE   ++  L+ L+L  N L Q S   F   ++L  L L + +   +  +     KN
Sbjct: 63  KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122

Query: 333 LSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIP---SLHMSKNLTHLDLSYNA 389
           L  LDL+      +   +   L  L  L LS NK          +  + +L  L+LS N 
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182

Query: 390 LPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLF---SLPMLQQLQLAENKFGGLIPE- 445
           +    S   +  +  L  + L    L  S+   L    +   ++ L L+ ++        
Sbjct: 183 IKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241

Query: 446 FSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAK 505
           F     + L  +DLS N L      S   L  L+   L  N +   +   ++  L N+  
Sbjct: 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH-LFSHSLHGLFNVRY 300

Query: 506 LELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPN--LKNQSKLFNLDLSDNQISGEI 563
           L L  +                    ++   L  I +   +    L +L++ DN I G  
Sbjct: 301 LNLKRSFT---------------KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK 345

Query: 564 PNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVL 623
            N     G ++L+YL+LS++         S+  L+  T + L  + L             
Sbjct: 346 SNMFT--GLINLKYLSLSNSFT-------SLRTLTNETFVSLAHSPLH------------ 384

Query: 624 VDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGK 683
                                     +L+ N I+ +  +      +L VLDL  N++  +
Sbjct: 385 ------------------------ILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 420

Query: 684 MPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGG--TVPKSLANCR 741
           +     +  E +  + L  N        +F     L  L L    L    + P      R
Sbjct: 421 LTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR 480

Query: 742 NLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSW------PKLQI 795
           NL +LDL NN I +     LE +  L +L L+ N+          G           L I
Sbjct: 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540

Query: 796 VDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGL 855
           ++L SN F                                                   +
Sbjct: 541 LNLESNGF-------------------------------------------------DEI 551

Query: 856 EMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIG-NLQQL 914
            +E+ K L     ID   NN +           SL  LNL +N +T       G   + L
Sbjct: 552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNL 611

Query: 915 ESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLVG 950
             LD+  N              F++++N +H N+  
Sbjct: 612 TELDMRFNPFDCTCESIAW---FVNWINETHTNIPE 644

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  147 bits (374), Expect = 7e-37
 Identities = 74/426 (17%), Positives = 144/426 (33%), Gaps = 64/426 (15%)

Query: 552 LDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQ 611
            D S  +++ ++P+ +      ++  LNL+HN L  L    + +  S +T LD+      
Sbjct: 9   ADCSHLKLT-QVPDDL----PTNITVLNLTHNQLRRLP-AANFTRYSQLTSLDV------ 56

Query: 612 GNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLL 671
                            N+ +   P+            +L +N ++ +  +T      L 
Sbjct: 57  ---------------GFNTISKLEPELCQKLPMLK-VLNLQHNELSQLSDKTFAFCTNLT 100

Query: 672 VLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGG 731
            L L  N +        +K    L  L+L  N LS T   T      L  L L+ N++  
Sbjct: 101 ELHLMSNSIQKIKNNPFVKQKN-LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 159

Query: 732 TVPKSLANCRN--LVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNI-SCRENGD 788
              + L    N  L  L+L +N+I++  P     I  L  L L +     ++        
Sbjct: 160 LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL 219

Query: 789 SWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAV 848
           +   ++ + L+++                       + + F  + +  L + D  Y +  
Sbjct: 220 ANTSIRNLSLSNSQL------------------STTSNTTFLGLKWTNLTMLDLSYNNLN 261

Query: 849 TVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQN---------A 899
            V +          L          NN        +  L ++  LNL ++         +
Sbjct: 262 VVGNDSFAW-----LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLAS 316

Query: 900 LTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLVGKIPISTQLQ 959
           L      +   L+ LE L++  N + G        L  L +L+LS++    +   +    
Sbjct: 317 LPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFV 376

Query: 960 SFLATS 965
           S   + 
Sbjct: 377 SLAHSP 382

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 99.7 bits (249), Expect = 1e-21
 Identities = 57/355 (16%), Positives = 100/355 (28%), Gaps = 83/355 (23%)

Query: 81  LDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFA 140
           L+L++  IS    ++     L +L+ L+L  N             L N+  + LS   + 
Sbjct: 386 LNLTKNKISKIESDA--FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443

Query: 141 GQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGI 200
                  + +  L  L L               +     Q L                  
Sbjct: 444 QLTRNSFALVPSLQRLMLRR-VALK-----NVDSSPSPFQPL------------------ 479

Query: 201 EWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFN 260
                       L +L LS+  ++                            + L     
Sbjct: 480 ----------RNLTILDLSNNNIANIN------------------------DDMLEGLEK 505

Query: 261 LTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFS 320
           L  L L H+ L                  L  ++   G +      S L  L L +  F 
Sbjct: 506 LEILDLQHNNLA----------------RLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549

Query: 321 GVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSL--HMSK 378
            +  +   +L  L  +DL L   +    +   N   L  L+L  N        +     +
Sbjct: 550 EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFR 609

Query: 379 NLTHLDLSYNALPGAISS----TDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPML 429
           NLT LD+ +N       S     +W + ++    +L  + L  + P      P+ 
Sbjct: 610 NLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNT-PPHYHGFPVR 663

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  274 bits (702), Expect = 3e-80
 Identities = 100/598 (16%), Positives = 195/598 (32%), Gaps = 71/598 (11%)

Query: 47  FNSSLSFRMVQWSQSNDCCTWS---GVDCDEAGRVIGLDLSEESISAGIDNSSPLFSLKY 103
                +     W+ + +   W    GV  +  GRV GL L     S  + ++  +  L  
Sbjct: 49  QQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDA--IGQLTE 106

Query: 104 LQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNR 163
           L+ L L  +     E   G   ++   +               V    R    DL     
Sbjct: 107 LEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCI 166

Query: 164 FGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYL 223
              P +      S +        ++     NI+       +A+  L  KL+   + +   
Sbjct: 167 NSDPQQKSIKKSSRITLK---DTQIGQLSNNIT----FVSKAVMRL-TKLRQFYMGNSPF 218

Query: 224 SGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVH 283
                    + ++                    +  +LT + + +       P  +  + 
Sbjct: 219 VAENICEAWENENSEY-----AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP 273

Query: 284 TLETLDLSGNSLLQG--------SLPDFPKNSSLRTLMLSNTNF-SGVLPDSIGNLKNLS 334
            ++ ++++ N  + G        +L D P    ++ + +   N  +  +  S+  +K L 
Sbjct: 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLG 333

Query: 335 RLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSL-HMSKNLTHLDLSYNALPGA 393
            L+      +G +P +  +  +L  L+L++N+      +    ++ + +L  ++N L   
Sbjct: 334 MLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYI 392

Query: 394 ISSTDWEHLSNLVYVDLRYNSLNG-------SIPGSLFSLPMLQQLQLAENKFGGLIPE- 445
            +  D + +S +  +D  YN +          +  + F    +  + L+ N+      E 
Sbjct: 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL 452

Query: 446 FSNASSSALDTIDLSGNRLEG-------PIPMSIFDLRNLKILILSSNKLNGTVQLAAIQ 498
           FS  S   L +I+L GN L             +  +   L  + L  NKL          
Sbjct: 453 FSTGSP--LSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRAT 510

Query: 499 RLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQ 558
            L  L  ++LSYN+ +        FP+Q                LK        D   N+
Sbjct: 511 TLPYLVGIDLSYNSFS-------KFPTQPLNSS----------TLKGFGIRNQRDAQGNR 553

Query: 559 ISGEIPNWVWEIGN-VSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIP 615
              E P     I    SL  L +  N +  +     I     I+VLD+  N       
Sbjct: 554 TLREWPE---GITLCPSLTQLQIGSNDIRKV--NEKI--TPNISVLDIKDNPNISIDL 604

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  262 bits (671), Expect = 5e-76
 Identities = 86/630 (13%), Positives = 193/630 (30%), Gaps = 106/630 (16%)

Query: 123 LGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNL 182
           L S   +T L+L   G +G++P  +  +T L  L L S              +S  +   
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANM--- 133

Query: 183 AELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRL 242
                                          +       +          +     +I+ 
Sbjct: 134 -----------------------------SDEQKQKMRMHYQKTFVDYDPREDFSDLIKD 164

Query: 243 D--QNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSL 300
               +     + +        T +    + +     + ++++  L    +  +  +  ++
Sbjct: 165 CINSDPQQKSIKKSSRITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENI 223

Query: 301 PDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYL 360
            +  +N +                    NLK+L+ +++  C     +PT L  L ++  +
Sbjct: 224 CEAWENENSEYA-----QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278

Query: 361 DLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSL-NGSI 419
           +++ N+ +         + L    +                   +  + + YN+L    +
Sbjct: 279 NVACNRGISGEQLKDDWQALADAPV----------------GEKIQIIYIGYNNLKTFPV 322

Query: 420 PGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIF-DLRNL 478
             SL  +  L  L+   N+  G +P F +     L +++L+ N++   IP +       +
Sbjct: 323 ETSLQKMKKLGMLECLYNQLEGKLPAFGSEIK--LASLNLAYNQITE-IPANFCGFTEQV 379

Query: 479 KILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLT-VNAGSDSSFP------SQVRTLR 531
           + L  + NKL     +   + +  ++ ++ SYN +  V+  +             V ++ 
Sbjct: 380 ENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439

Query: 532 LASCKLRVIPN--LKNQSKLFNLDLSDNQISGEIPNWVW----EIGN-VSLQYLNLSHNL 584
           L++ ++   P       S L +++L  N ++    N +        N   L  ++L  N 
Sbjct: 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499

Query: 585 LSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVS 644
           L+ L   F  + L  +  +DL  N                        S  P    N  +
Sbjct: 500 LTKLSDDFRATTLPYLVGIDLSYNSF----------------------SKFPTQPLNSST 537

Query: 645 FTLF-----FSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLN 699
              F          N      PE +     L  L +  N +              + VL+
Sbjct: 538 LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPN----ISVLD 593

Query: 700 LRGNSLSGTLSVTFPGNCGLHTLDLNGNQL 729
           ++ N                    L  ++ 
Sbjct: 594 IKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  238 bits (608), Expect = 2e-67
 Identities = 94/572 (16%), Positives = 174/572 (30%), Gaps = 82/572 (14%)

Query: 260 NLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPK----NSSLRTLMLS 315
            +T L L     +G  P+ I Q+  LE L L  +          PK    N S       
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 316 NTNFSGVLPDSIGNLK--NLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPS 373
             ++     D        +L +  +       SI  S     +   +    N       +
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA 201

Query: 374 LHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQ 433
           +     L    +  +          WE+ +        Y     +      +L  L  ++
Sbjct: 202 VMRLTKLRQFYMGNSPFVAENICEAWENEN------SEYAQQYKTEDLKWDNLKDLTDVE 255

Query: 434 LAENKFGGLIP-EFSNASSSALDTIDLSGNRL--------EGPIPMSIFDLRNLKILILS 484
           +        +P          +  I+++ NR         +            ++I+ + 
Sbjct: 256 VYNCPNLTKLPTFLKALPE--MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313

Query: 485 SNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLK 544
            N L       ++Q++  L  LE  YN L                          +P   
Sbjct: 314 YNNLKTFPVETSLQKMKKLGMLECLYNQLEG-----------------------KLPAFG 350

Query: 545 NQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLD 604
           ++ KL +L+L+ NQI+  IP          ++ L+ +HN L  +   F    +S ++ +D
Sbjct: 351 SEIKLASLNLAYNQITE-IPANFCG-FTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAID 408

Query: 605 LHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETL 664
              N++                   +F   +       ++ +   +LSNN I+    E  
Sbjct: 409 FSYNEIGSVDG-------------KNFDP-LDPTPFKGINVS-SINLSNNQISKFPKELF 453

Query: 665 CRAKYLLVLDLSKNKLSGKMPTCLIKMSEILG------VLNLRGNSLSGTLSVTFPGNC- 717
                L  ++L  N L+      L   +E          ++LR N L+            
Sbjct: 454 STGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLP 513

Query: 718 GLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGN------NKIRDTFPWWLENISSLRVLV 771
            L  +DL+ N      P    N   L    + N      N+    +P  +    SL  L 
Sbjct: 514 YLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ 572

Query: 772 LRSNSFYGNISCRENGDSWPKLQIVDLASNNF 803
           + SN               P + ++D+  N  
Sbjct: 573 IGSNDIRKVNEK-----ITPNISVLDIKDNPN 599

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  236 bits (603), Expect = 9e-67
 Identities = 78/661 (11%), Positives = 171/661 (25%), Gaps = 133/661 (20%)

Query: 305 KNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLA----LCYFDGSIPTSLANLTQLVYL 360
            N  +  L L     SG +PD+IG L  L  L L             P  ++        
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 361 DLSFNKFVGPIPS---LHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNG 417
                 +              +L    ++ +    +I  +          +    N++  
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS-RITLKDTQIGQLSNNI-T 196

Query: 418 SIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRN 477
            +  ++  L  L+Q  +  + F             A +  +    +      +   +L++
Sbjct: 197 FVSKAVMRLTKLRQFYMGNSPFVAENI------CEAWENENSEYAQQYKTEDLKWDNLKD 250

Query: 478 LKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKL 537
           L  + + +      +    ++ L  +  + ++ N           + +            
Sbjct: 251 LTDVEVYNCPNLTKLP-TFLKALPEMQLINVACNRGISGEQLKDDWQA------------ 297

Query: 538 RVIPNLKNQSKLFNLDLSDNQI-SGEIPNWVWEIGN-VSLQYLNLSHNLLSSLQRPFSIS 595
             + +     K+  + +  N + +  +      +     L  L   +N L       +  
Sbjct: 298 --LADAPVGEKIQIIYIGYNNLKTFPVE---TSLQKMKKLGMLECLYNQLEGK--LPAFG 350

Query: 596 DLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNS 655
               +  L+L  NQ+                      + IP +   F       S ++N 
Sbjct: 351 SEIKLASLNLAYNQI----------------------TEIPANFCGFTEQVENLSFAHNK 388

Query: 656 ITGVIPET-LCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFP 714
           +  +           +  +D S N++          +                       
Sbjct: 389 LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF------------------ 430

Query: 715 GNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRD-------TFPWWLENISSL 767
               + +++L+ NQ+     +  +    L  ++L  N + +             +N   L
Sbjct: 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLL 490

Query: 768 RVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQS 827
             + LR N             + P L  +DL+ N                          
Sbjct: 491 TSIDLRFNKLTKLSDDFRAT-TLPYLVGIDLSYN-------------------------- 523

Query: 828 NFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRL 887
           +F     + L  +                    K   I    D   N      PE I   
Sbjct: 524 SFSKFPTQPLNSSTL------------------KGFGIRNQRDAQGNRTLREWPEGITLC 565

Query: 888 KSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNN 947
            SL  L +  N +   +   I     +  LD+  N         +          L ++ 
Sbjct: 566 PSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622

Query: 948 L 948
            
Sbjct: 623 T 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  196 bits (499), Expect = 5e-53
 Identities = 77/664 (11%), Positives = 181/664 (27%), Gaps = 138/664 (20%)

Query: 337 DLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIP-SLHMSKNLTHLDLSYNALPGAIS 395
           +  L  +      SL +  ++  L L      G +P ++     L  L L  +       
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 396 STDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALD 455
               + +S  +  + +           +   P      L ++                  
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKD------------------ 164

Query: 456 TIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTV 515
              ++ +  +  I  S         +   SN +  T    A+ RL  L +  +  +    
Sbjct: 165 --CINSDPQQKSIKKSSRITLKDTQIGQLSNNI--TFVSKAVMRLTKLRQFYMGNSPFV- 219

Query: 516 NAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGN-VS 574
               +     +      A           N   L ++++ +     ++P     +     
Sbjct: 220 --AENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT---FLKALPE 274

Query: 575 LQYLNLSHNLL-------SSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYS 627
           +Q +N++ N            Q          I ++ +  N L+                
Sbjct: 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK---------------- 318

Query: 628 NNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTC 687
               T  +   +              N + G +P        L  L+L+ N+++  +P  
Sbjct: 319 ----TFPVETSLQKMKKLG-MLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITE-IPAN 371

Query: 688 LIKMSEILGVLNLRGNSLSGTLSVTFPGNC-GLHTLDLNGNQLGGTVPKSLANCRNLVVL 746
               +E +  L+   N L    ++    +   +  +D + N++G    K+          
Sbjct: 372 FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP------- 424

Query: 747 DLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGR 806
                              ++  +                          +L++N     
Sbjct: 425 ----------LDPTPFKGINVSSI--------------------------NLSNNQISK- 447

Query: 807 VPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIF 866
            P++  ++   +                  + +      +    + K           + 
Sbjct: 448 FPKELFSTGSPL----------------SSINLMGNMLTEIPKNSLKDENENFKNTYLL- 490

Query: 867 TSIDFSRNNFDGPIPEEI--GRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSM--- 921
           TSID   N     + ++     L  L G++LS N+ +   P+   N   L+   +     
Sbjct: 491 TSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRD 548

Query: 922 ---NHLSGQIPIQLANLTFLSFLNLSHNNLVGKIP--ISTQLQSFLATSFEGNKGLCGPP 976
              N    + P  +     L+ L +  N++   +   I+  +        + N  +    
Sbjct: 549 AQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKITPNISVL---DIKDNPNISIDL 604

Query: 977 LNVC 980
             VC
Sbjct: 605 SYVC 608

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  184 bits (469), Expect = 5e-49
 Identities = 68/464 (14%), Positives = 141/464 (30%), Gaps = 74/464 (15%)

Query: 98  LFSLKYLQSLNLAFNMF------------------NATEIPSGLGSLTNLTNLNLSNAGF 139
           +  L  L+   +  + F                            +L +LT++ + N   
Sbjct: 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN 261

Query: 140 AGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPG 199
             ++P  +  +  +  ++++           ++           +++ +Y+   N+    
Sbjct: 262 LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP 321

Query: 200 IEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFF 259
           +E   +L  +  KL +L      L G + P+      L+ + L  N +      F     
Sbjct: 322 VET--SLQKM-KKLGMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQITEIPANFCGFTE 377

Query: 260 NLTSLRLSHSRLNGTFPEK--ILQVHTLETLDLSGNSL-------LQGSLPDFPKNSSLR 310
            + +L  +H++L    P       V  +  +D S N +            P   K  ++ 
Sbjct: 378 QVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436

Query: 311 TLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDG-------SIPTSLANLTQLVYLDLS 363
           ++ LSN   S    +       LS ++L                  +  N   L  +DL 
Sbjct: 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR 496

Query: 364 FNKFVGPIPSLHMSK--NLTHLDLSYNAL----PGAISSTDWEHLSNLVYVDLRYNSLNG 417
           FNK          +    L  +DLSYN+        ++S+  +        D + N    
Sbjct: 497 FNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLR 556

Query: 418 SIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRN 477
             P  +   P L QLQ+  N    +  + +      +  +D+  N         +     
Sbjct: 557 EWPEGITLCPSLTQLQIGSNDIRKVNEKIT----PNISVLDIKDNPNISIDLSYVCPYIE 612

Query: 478 LKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDS 521
             + +                         L Y+      G D+
Sbjct: 613 AGMYM-------------------------LFYDKTQDIRGCDA 631

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 64.3 bits (157), Expect = 1e-10
 Identities = 15/99 (15%), Positives = 30/99 (30%), Gaps = 4/99 (4%)

Query: 868 SIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQ 927
           + +   + +       +     + GL+L     +G +P AIG L +LE L L  +     
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120

Query: 928 ----IPIQLANLTFLSFLNLSHNNLVGKIPISTQLQSFL 962
                P  ++             +           + F 
Sbjct: 121 ERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  263 bits (675), Expect = 8e-77
 Identities = 97/559 (17%), Positives = 174/559 (31%), Gaps = 40/559 (7%)

Query: 260 NLTSLRLSHSRLNGT-FPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTN 318
            + ++      LN    P+ +    + + LDLS N L       F     L+ L LS   
Sbjct: 6   VVPNITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE 63

Query: 319 FSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIP-SLHMS 377
              +   +  +L +LS L L           + + L+ L  L              +   
Sbjct: 64  IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123

Query: 378 KNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQ----QLQ 433
           K L  L++++N +        + +L+NL ++DL  N +       L  L  +      L 
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183

Query: 434 LAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIF-DLRNLKILILSSNKLNGTV 492
           L+ N    + P         L  + L  N     +  +    L  L++  L   +     
Sbjct: 184 LSLNPMNFIQPGAFKEIR--LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241

Query: 493 QLAAIQR--LHNLAKLELSYNNLTVNAGSDSSFPS------QVRTLRLASCKLRVIPNLK 544
            L    +  L  L  L +    L                   V +  L S  +  + +  
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS 301

Query: 545 NQSKLFNLDLSDNQISG-----------------EIPNWVWEIGNVSLQYLNLSHNLLSS 587
                 +L+L + +                    +  N   E+   SL++L+LS N LS 
Sbjct: 302 YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF 361

Query: 588 LQR-PFSISDLSPITVLDLHSNQLQGNIPY--PPPKAVLVDYSNNSFTSSIPDDIGNFVS 644
                 S    + +  LDL  N +           +   +D+ +++        +   + 
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421

Query: 645 FTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNS 704
             ++  +S+                L VL ++ N         +      L  L+L    
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 705 LSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENI 764
           L       F     L  L+++ N              +L VLD   N I  +    L++ 
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 541

Query: 765 -SSLRVLVLRSNSFYGNIS 782
            SSL  L L  N F     
Sbjct: 542 PSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  221 bits (566), Expect = 5e-62
 Identities = 128/619 (20%), Positives = 214/619 (34%), Gaps = 74/619 (11%)

Query: 81  LDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFA 140
           LDLS   +      S   FS   LQ L+L+      T       SL++L+ L L+     
Sbjct: 33  LDLSFNPLRHLGSYS--FFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 141 GQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGI 200
                  SG++ L  L         +         +  + +L  L+EL +    I     
Sbjct: 90  SLALGAFSGLSSLQKLVAVE-TNLASL-------ENFPIGHLKTLKELNVAHNLIQ--SF 139

Query: 201 EWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSV----IRLDQNDLLSPVPEFLA 256
           +  +  S+L   L+ L LSS  +       L  L  + +    + L  N +    P    
Sbjct: 140 KLPEYFSNL-TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198

Query: 257 DFFNLTSLRLSHSRLNGTFPEKILQVHT-LETLDLSGNSL-LQGSLPDFPKNS--SLRTL 312
           +   L  L L ++  +    +  +Q    LE   L       +G+L  F K++   L  L
Sbjct: 199 E-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 313 MLSN------TNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNK 366
            +          +   + D    L N+S   L     +       +      +L+L   K
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCK 315

Query: 367 FVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLN--GSIPGSLF 424
           F G  P+L + K+L  L  + N    A S      L +L ++DL  N L+  G    S F
Sbjct: 316 F-GQFPTLKL-KSLKRLTFTSNKGGNAFSEV---DLPSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 425 SLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIF-DLRNLKILIL 483
               L+ L L+ N    +   F       L+ +D   + L+     S+F  LRNL  L +
Sbjct: 371 GTTSLKYLDLSFNGVITMSSNFLGLEQ--LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 484 SSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNL 543
           S               L +L  L+++ N+         +F   +                
Sbjct: 429 SHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQ------ENFLPDI---------------F 466

Query: 544 KNQSKLFNLDLSDNQISGEIPNWVWEIGN-VSLQYLNLSHNLLSSLQRPFSISDLSPITV 602
                L  LDLS  Q+    P       +  SLQ LN+SHN   SL   F    L+ + V
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTA---FNSLSSLQVLNMSHNNFFSLD-TFPYKCLNSLQV 522

Query: 603 LDLHSNQLQGNIPY----PPPKAVLVDYSNNSFTSSIP-DDIGNFVSFTLFFSLSNNSIT 657
           LD   N +  +        P     ++ + N F  +        ++       +    + 
Sbjct: 523 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERME 582

Query: 658 GVIPETLCRAKYLLVLDLS 676
              P    +   +L L+++
Sbjct: 583 CATPSDK-QGMPVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  214 bits (548), Expect = 1e-59
 Identities = 110/586 (18%), Positives = 182/586 (31%), Gaps = 86/586 (14%)

Query: 377 SKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAE 436
             +  +LDLS+N L   + S  +     L  +DL    +     G+  SL  L  L L  
Sbjct: 27  PFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 437 NKFGGLIPE-FSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLA 495
           N    L    FS  SS  L  +      L       I  L+ LK L ++ N +       
Sbjct: 86  NPIQSLALGAFSGLSS--LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 496 AIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLS 555
               L NL  L+LS N +     +D                LRV+  +       +LDLS
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTD----------------LRVLHQM--PLLNLSLDLS 185

Query: 556 DNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIP 615
            N ++   P        + L  L L +N  S       I  L+ + V  L   + +    
Sbjct: 186 LNPMNFIQPGA---FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR---- 238

Query: 616 YPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTL-FFSLS-NNSITGVIPETLCRAKYLLVL 673
                      +  +        +    + T+  F L+  +     I +       +   
Sbjct: 239 -----------NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287

Query: 674 DLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTV 733
            L    +           +     L L            FP         L      G  
Sbjct: 288 SLVSVTIERVKD---FSYNFGWQHLELVNCKFGQ-----FPTLKLKSLKRLTFTSNKGGN 339

Query: 734 PKSLANCRNLVVLDLGNNKI--RDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWP 791
             S  +  +L  LDL  N +  +          +SL+ L L  N      S   N     
Sbjct: 340 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS---NFLGLE 396

Query: 792 KLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVT 851
           +L+ +D   +N           S + +                 +L I+           
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNL----------------IYLDISH---------- 430

Query: 852 SKGLEMELVKILSIFTS---IDFSRNNFDGPI-PEEIGRLKSLHGLNLSQNALTGPIPSA 907
                +    I +  +S   +  + N+F     P+    L++L  L+LSQ  L    P+A
Sbjct: 431 -THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489

Query: 908 IGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLVGKIP 953
             +L  L+ L++S N+           L  L  L+ S N+++    
Sbjct: 490 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  149 bits (377), Expect = 2e-37
 Identities = 93/515 (18%), Positives = 151/515 (29%), Gaps = 134/515 (26%)

Query: 451 SSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSY 510
             +   +DLS N L      S F    L++L LS  ++   ++  A Q L +L+ L L+ 
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTG 85

Query: 511 NNLTVNAGSDSSFPSQVRTLRLASCKLRVIPN-LKNQSKLFNLDLSDNQISGEIPNWVWE 569
           N +                         +        S L  L   +  ++      +  
Sbjct: 86  NPIQS-----------------------LALGAFSGLSSLQKLVAVETNLASLENFPIG- 121

Query: 570 IGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNN 629
               +L+ LN++HNL+ S + P   S+L+ +  LDL                     S+N
Sbjct: 122 -HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL---------------------SSN 159

Query: 630 SFTSSIPDDIGNFVSFTLFF---SLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPT 686
              S    D+       L      LS N +  + P    +   L  L L  N  S  +  
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMK 218

Query: 687 CLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVL 746
             I+    L V  L                        N   L      +L    NL + 
Sbjct: 219 TCIQGLAGLEVHRLVLGEFR------------------NEGNLEKFDKSALEGLCNLTIE 260

Query: 747 DLGNNKI---RDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNF 803
           +     +    D        ++++    L S      I   ++       Q ++L  N  
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV----TIERVKDFSYNFGWQHLEL-VNCK 315

Query: 804 GGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKIL 863
            G+ P   + S K                                               
Sbjct: 316 FGQFPTLKLKSLK----------------------------------------------- 328

Query: 864 SIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALT--GPIPSAIGNLQQLESLDLSM 921
                + F+ N       E    L SL  L+LS+N L+  G    +      L+ LDLS 
Sbjct: 329 ----RLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382

Query: 922 NHLSGQIPIQLANLTFLSFLNLSHNNLVGKIPIST 956
           N +   +      L  L  L+  H+NL      S 
Sbjct: 383 NGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  125 bits (316), Expect = 6e-30
 Identities = 68/394 (17%), Positives = 115/394 (29%), Gaps = 36/394 (9%)

Query: 599 PITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITG 658
           P                  P     +D S N           +F        LS   I  
Sbjct: 8   PNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQ-VLDLSRCEIQT 66

Query: 659 VIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCG 718
           +         +L  L L+ N +          +S  L  L     +L+   +        
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS-LQKLVAVETNLASLENFPIGHLKT 125

Query: 719 LHTLDLNGNQL-GGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSF 777
           L  L++  N +    +P+  +N  NL  LDL +NKI+  +   L  +  + +L L  +  
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 778 YGNISCRENGD-SWPKLQIVDLASNNFGGRVPQKCITSWKAMMS---DEDEAQSNFKDVH 833
              ++  + G     +L  + L +N     V + CI     +        E ++      
Sbjct: 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245

Query: 834 FEFLKIADFYYQDAVTVTSKGLEMELVKILSIF------TSIDFSRNNFDGPIPEEIGRL 887
           F+   +               L+  L  I+ +F      +S        +          
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYN 303

Query: 888 KSLHGLNLSQNALT-------------------GPIPSAIGNLQQLESLDLSMNHLS--G 926
                L L                         G    +  +L  LE LDLS N LS  G
Sbjct: 304 FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG 363

Query: 927 QIPIQLANLTFLSFLNLSHNNLVGKIPISTQLQS 960
                    T L +L+LS N ++        L+ 
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 397

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 78.5 bits (194), Expect = 5e-15
 Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 1/95 (1%)

Query: 867 TSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSG 926
             +D SR             L  L  L L+ N +      A   L  L+ L     +L+ 
Sbjct: 55  QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 114

Query: 927 QIPIQLANLTFLSFLNLSHNNLVGKIPISTQLQSF 961
                + +L  L  LN++HN +     +     + 
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQS-FKLPEYFSNL 148

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  244 bits (625), Expect = 4e-70
 Identities = 105/569 (18%), Positives = 191/569 (33%), Gaps = 29/569 (5%)

Query: 225 GPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHT 284
           G ++P +  + +++  +     L   VP+ +    +  ++ LS + L             
Sbjct: 2   GSLNPCIEVVPNITY-QCMDQKLSK-VPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSE 57

Query: 285 LETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFD 344
           L+ LDLS   +       +     L  L+L+        P S   L +L  L        
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 345 GSIPTSLANLTQLVYLDLSFNKF--VGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHL 402
                 +  L  L  L+++ N               NL H+DLSYN +   I+  D + L
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFL 176

Query: 403 SNL----VYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTID 458
                  + +D+  N ++  I    F    L +L L  N     I +    + + L    
Sbjct: 177 RENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHR 235

Query: 459 LSGNRLEGPIPMSIFD------LRNLKILILSSNKLNGT-VQLAAIQRLHNLAKLELSYN 511
           L     +    + IF+      L ++ I        N     +     L N++ + L+  
Sbjct: 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV 295

Query: 512 NLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIG 571
           ++      D     + ++L +  C+L+  P L +   L +L L+ N+ S           
Sbjct: 296 SIKYL--EDVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSISFKKV----A 348

Query: 572 NVSLQYLNLSHNLLSSLQR-PFSISDLSPITVLDLHSNQLQGNIPYPP--PKAVLVDYSN 628
             SL YL+LS N LS      +S    + +  LDL  N             +   +D+ +
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQH 408

Query: 629 NSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCL 688
           ++            +   L+  +S  +              L  L ++ N       + +
Sbjct: 409 STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468

Query: 689 IKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDL 748
              +  L  L+L    L       F     L  L+++ N L            +L  LD 
Sbjct: 469 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528

Query: 749 GNNKIRDTFPWWLENISSLRVLVLRSNSF 777
             N+I  +         SL    L +NS 
Sbjct: 529 SFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  218 bits (557), Expect = 7e-61
 Identities = 101/544 (18%), Positives = 177/544 (32%), Gaps = 38/544 (6%)

Query: 280 LQVHTLETLDLSGNSLLQGSLPDFPKN--SSLRTLMLSNTNFSGVLPDSIGNLKNLSRLD 337
           ++V    T       L +      P +  SS + + LS      +   S  N   L  LD
Sbjct: 8   IEVVPNITYQCMDQKLSK-----VPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLD 62

Query: 338 LALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIP-SLHMSKNLTHLDLSYNALPGAISS 396
           L+ C  +     +   L  L  L L+ N      P S     +L +L      L   + S
Sbjct: 63  LSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS-LES 121

Query: 397 TDWEHLSNLVYVDLRYNSLNGSIPGSLFS-LPMLQQLQLAENKFGGLIPE---FSNASSS 452
                L  L  +++ +N ++     + FS L  L  + L+ N    +      F   +  
Sbjct: 122 FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQ 181

Query: 453 ALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNN 512
              ++D+S N ++  I    F    L  L L  N  +  +    +Q L  L    L    
Sbjct: 182 VNLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGE 240

Query: 513 LTVNAGSDSSFPS--------QVRTLRLASCKLRVIPN--LKNQSKLFNLDLSDNQISGE 562
                  +   PS         +   RL                + +  + L+   I   
Sbjct: 241 FKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-Y 299

Query: 563 IPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAV 622
           + +      +   Q L++    L      F   DL  +  L L  N+   +       ++
Sbjct: 300 LEDVP---KHFKWQSLSIIRCQLKQ----FPTLDLPFLKSLTLTMNKGSISFKKVALPSL 352

Query: 623 LV-DYSNNSFTSSIPDDIGNFVSFTL-FFSLSNNSITGVIPETLCRAKYLLVLDLSKNKL 680
              D S N+ + S      +  + +L    LS N    ++       + L  LD   + L
Sbjct: 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTL 411

Query: 681 SGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQL-GGTVPKSLAN 739
                       E L  L++   +        F G   L+TL + GN     T+    AN
Sbjct: 412 KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN 471

Query: 740 CRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLA 799
             NL  LDL   ++        + +  L++L +  N+     S   + +    L  +D +
Sbjct: 472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS--SHYNQLYSLSTLDCS 529

Query: 800 SNNF 803
            N  
Sbjct: 530 FNRI 533

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  211 bits (538), Expect = 2e-58
 Identities = 98/520 (18%), Positives = 175/520 (33%), Gaps = 34/520 (6%)

Query: 81  LDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSG-LGSLTNLTNLNLSNAGF 139
           LDLS   I    D +     L +L +L L  N         G    LT+L NL       
Sbjct: 61  LDLSRCEIETIEDKA--WHGLHHLSNLILTGNPI--QSFSPGSFSGLTSLENLVAVETKL 116

Query: 140 AGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPG 199
           A      +  +  L  L+++  N       + +  L     NL  L  + L    I    
Sbjct: 117 ASLESFPIGQLITLKKLNVAH-NF------IHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169

Query: 200 IEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPE-FLADF 258
           +   Q L         L +S   +   I     +   L  + L  N   S + +  L + 
Sbjct: 170 VNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNL 228

Query: 259 FNLTSLRLSHSRLNGTFPEKILQVHTLE--------TLDLSGNSLLQGSLPDFPKNSSLR 310
             L   RL           +I +   +E           L+  +     +  F   +++ 
Sbjct: 229 AGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVS 288

Query: 311 TLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGP 370
            + L+  +   +  + +        L +  C      PT   +L  L  L L+ NK    
Sbjct: 289 AMSLAGVSIKYL--EDVPKHFKWQSLSIIRCQLK-QFPT--LDLPFLKSLTLTMNKGSIS 343

Query: 371 IPSLHMSKNLTHLDLSYNALPGAISSTDWE-HLSNLVYVDLRYNSLNGSIPGSLFSLPML 429
              + +  +L++LDLS NAL  +   +  +   ++L ++DL +N     +  +   L  L
Sbjct: 344 FKKVALP-SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEEL 401

Query: 430 QQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLN 489
           Q L    +    +    +  S   L  +D+S    +         L +L  L ++ N   
Sbjct: 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461

Query: 490 GTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPN--LKNQS 547
                       NL  L+LS   L   +        +++ L ++   L  + +       
Sbjct: 462 DNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY 521

Query: 548 KLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSS 587
            L  LD S N+I              SL + NL++N ++ 
Sbjct: 522 SLSTLDCSFNRIETSKGILQH--FPKSLAFFNLTNNSVAC 559

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  206 bits (526), Expect = 9e-57
 Identities = 107/622 (17%), Positives = 193/622 (31%), Gaps = 80/622 (12%)

Query: 345 GSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSN 404
           GS+   +  +  +        K    +P   +  +  ++DLS+N L   + S  + + S 
Sbjct: 2   GSLNPCIEVVPNIT-YQCMDQKLSK-VPD-DIPSSTKNIDLSFNPLKI-LKSYSFSNFSE 57

Query: 405 LVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPE-FSNASSSALDTIDLSGNR 463
           L ++DL    +      +   L  L  L L  N      P  FS  +S  L+ +     +
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS--LENLVAVETK 115

Query: 464 LEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSF 523
           L       I  L  LK L ++ N ++     A    L NL  ++LSYN +          
Sbjct: 116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT-------- 167

Query: 524 PSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHN 583
                   +    L+ +          +LD+S N I             + L  L L  N
Sbjct: 168 --------ITVNDLQFLRENPQV--NLSLDMSLNPIDFIQDQA---FQGIKLHELTLRGN 214

Query: 584 LLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFV 643
             SS      + +L+ + V  L   + +           L  +  +          G   
Sbjct: 215 FNSSNIMKTCLQNLAGLHVHRLILGEFKDERN-------LEIFEPSIME-------GLCD 260

Query: 644 SFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGN 703
                F L+  +              +  + L+   +        +        L++   
Sbjct: 261 VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED---VPKHFKWQSLSIIRC 317

Query: 704 SLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIR--DTFPWWL 761
            L    ++  P    L +L L  N+   ++        +L  LDL  N +       +  
Sbjct: 318 QLKQFPTLDLPF---LKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSD 372

Query: 762 ENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSD 821
              +SLR L L  N     I    N     +LQ +D   +            S + +   
Sbjct: 373 LGTNSLRHLDLSFNGA---IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL--- 426

Query: 822 EDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIP 881
                         +L I+    +             +   L+   ++  + N+F     
Sbjct: 427 -------------LYLDISYTNTK--------IDFDGIFLGLTSLNTLKMAGNSFKDNTL 465

Query: 882 EEI-GRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSF 940
             +     +L  L+LS+  L          L +L+ L++S N+L          L  LS 
Sbjct: 466 SNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 525

Query: 941 LNLSHNNLVGKIPISTQLQSFL 962
           L+ S N +     I       L
Sbjct: 526 LDCSFNRIETSKGILQHFPKSL 547

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  206 bits (525), Expect = 1e-56
 Identities = 102/553 (18%), Positives = 188/553 (33%), Gaps = 48/553 (8%)

Query: 104 LQSLNLAFNMFNATEIPSG-LGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLN 162
            ++++L+FN      + S    + + L  L+LS             G+  L  L L+  N
Sbjct: 34  TKNIDLSFNPL--KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG-N 90

Query: 163 RFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCY 222
              +          G    L  L  L      ++   +E    +  L   L+ L+++  +
Sbjct: 91  PIQSF-------SPGSFSGLTSLENLVAVETKLA--SLE-SFPIGQL-ITLKKLNVAHNF 139

Query: 223 LSG-PIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLT----SLRLSHSRLNGTFPE 277
           +    +    + L +L  + L  N + +     L           SL +S + ++    +
Sbjct: 140 IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQD 198

Query: 278 KILQVHTLETLDLSGNSLLQGSLPDFPKN-SSLRTLMLSNTNFSG------VLPDSIGNL 330
           +  Q   L  L L GN      +    +N + L    L    F          P  +  L
Sbjct: 199 QAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258

Query: 331 KNLSRLDLALCYFD--GSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYN 388
            +++  +  L Y +           L  +  + L+       +  +        L +   
Sbjct: 259 CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-LEDVPKHFKWQSLSIIRC 317

Query: 389 ALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPE-FS 447
                +       L  L  + L  N    SI     +LP L  L L+ N         +S
Sbjct: 318 ----QLKQFPTLDLPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYS 371

Query: 448 NASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLE 507
           +  +++L  +DLS N     +  +   L  L+ L    + L    + +A   L  L  L+
Sbjct: 372 DLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD 430

Query: 508 LSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPN---LKNQSKLFNLDLSDNQISGEIP 564
           +SY N  ++        + + TL++A    +         N + L  LDLS  Q+     
Sbjct: 431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW 490

Query: 565 NWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPY---PPPKA 621
                     LQ LN+SHN L  L      + L  ++ LD   N+++ +       P   
Sbjct: 491 GVFD--TLHRLQLLNMSHNNLLFLD-SSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSL 547

Query: 622 VLVDYSNNSFTSS 634
              + +NNS    
Sbjct: 548 AFFNLTNNSVACI 560

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.1 bits (141), Expect = 1e-08
 Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 5/124 (4%)

Query: 867 TSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTG-PIPSAIGNLQQLESLDLSMNHLS 925
            ++              IG+L +L  LN++ N +    +P+   NL  L  +DLS N++ 
Sbjct: 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166

Query: 926 GQIPIQLANLTFLSF----LNLSHNNLVGKIPISTQLQSFLATSFEGNKGLCGPPLNVCR 981
                 L  L         L++S N +      + Q       +  GN           +
Sbjct: 167 TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQ 226

Query: 982 TNSS 985
             + 
Sbjct: 227 NLAG 230

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  249 bits (638), Expect = 8e-70
 Identities = 100/633 (15%), Positives = 201/633 (31%), Gaps = 104/633 (16%)

Query: 119 IPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGL 178
               L +   +T L+L+  G  G++P  +  +T L  L   + +   +     +  L+  
Sbjct: 315 PGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPD 374

Query: 179 LQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLS 238
           +    + R             + + +       +L +  L    ++   +P +  ++  S
Sbjct: 375 MSEERKHRIR-----------MHYKKMFLDYDQRLNLSDLLQDAINR--NPEMKPIKKDS 421

Query: 239 VIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQG 298
            I L    + +           +T +            + I ++  L+ +  + +     
Sbjct: 422 RISLKDTQIGN-------LTNRITFI-----------SKAIQRLTKLQIIYFANSPF--- 460

Query: 299 SLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLV 358
                                      S  NLK+L+ ++L  C     +P  L +L +L 
Sbjct: 461 --TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518

Query: 359 YLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNG- 417
            L+++ N+ +              L   +  L     +        +    + YN+L   
Sbjct: 519 SLNIACNRGIS----------AAQLKADWTRLADDEDT-----GPKIQIFYMGYNNLEEF 563

Query: 418 SIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIF-DLR 476
               SL  +  L  L    NK    +  F       L  + L  N++E  IP        
Sbjct: 564 PASASLQKMVKLGLLDCVHNKVRH-LEAFGTNVK--LTDLKLDYNQIEE-IPEDFCAFTD 619

Query: 477 NLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLT-----VNAGSDSSFPSQVRTLR 531
            ++ L  S NKL     +   + ++ +  ++ SYN +      ++   D        T+ 
Sbjct: 620 QVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT 679

Query: 532 LASCKLRVIPN--LKNQSKLFNLDLSDNQISGEIPNWVW-----EIGN-VSLQYLNLSHN 583
           L+  +++  P       S +  + LS+N ++  IP            N   L  ++L  N
Sbjct: 680 LSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFN 738

Query: 584 LLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFV 643
            L+SL   F  + L  ++ +D+  N                        SS P    N  
Sbjct: 739 KLTSLSDDFRATTLPYLSNMDVSYNCF----------------------SSFPTQPLNSS 776

Query: 644 SFTLF-----FSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVL 698
               F          N I    P  +     L+ L +  N +  K+   L      L +L
Sbjct: 777 QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLTPQ---LYIL 832

Query: 699 NLRGNSLSGTLSVTFPGN--CGLHTLDLNGNQL 729
           ++  N        +       G++ L  +  Q 
Sbjct: 833 DIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  249 bits (637), Expect = 1e-69
 Identities = 123/651 (18%), Positives = 220/651 (33%), Gaps = 86/651 (13%)

Query: 142 QIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIE 201
            +PIQ+      +  D  +L      L  +N        N       +     +   G +
Sbjct: 256 NVPIQLKETAEYIK-DYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQ 314

Query: 202 WCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNL 261
               L +   ++  LSL+     G +  ++ +L  L V+    +        F  +    
Sbjct: 315 PGVDLDNN-GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTP 373

Query: 262 TSLRLSHSRLNGTFPEKILQV-HTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFS 320
                   R+   + +  L     L   DL  +++ +   P+         + L +T   
Sbjct: 374 DMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR--NPEMKPIKKDSRISLKDTQ-- 429

Query: 321 GVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNL 380
                 IGNL N              I  ++  LT+L  +  + + F     ++      
Sbjct: 430 ------IGNLTNRI----------TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDAN 473

Query: 381 THLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFG 440
           +     Y     + S     +L +L  V+L        +P  L+ LP LQ L +A N+  
Sbjct: 474 SDYAKQYENEELSWS-----NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI 528

Query: 441 GLIPEFSNASS--------SALDTIDLSGNRLEG-PIPMSIFDLRNLKILILSSNKLNGT 491
                 ++ +           +    +  N LE  P   S+  +  L +L    NK+   
Sbjct: 529 SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-- 586

Query: 492 VQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPN---LKNQSK 548
             L A      L  L+L YN +        +F  QV  L  +  KL+ IPN    K+   
Sbjct: 587 -HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYV 645

Query: 549 LFNLDLSDNQISGEIPNWVWEIGN---VSLQYLNLSHNLLSSLQRPFSISDLSPITVLDL 605
           + ++D S N+I  E  N    + +   ++   + LS+N +         +  SPI+ + L
Sbjct: 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF-PTELFATGSPISTIIL 704

Query: 606 HSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPE-TL 664
            +N +  +IP              +       +  N    T    L  N +T +  +   
Sbjct: 705 SNNLMT-SIP-------------ENSLKPKDGNYKNTYLLT-TIDLRFNKLTSLSDDFRA 749

Query: 665 CRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDL 724
               YL  +D+S N  S   PT  +  S+ L    +R                     D 
Sbjct: 750 TTLPYLSNMDVSYNCFSS-FPTQPLNSSQ-LKAFGIRHQ------------------RDA 789

Query: 725 NGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSN 775
            GN++    P  +  C +L+ L +G+N IR            L +L +  N
Sbjct: 790 EGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQ---LYILDIADN 837

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  240 bits (614), Expect = 1e-66
 Identities = 97/609 (15%), Positives = 188/609 (30%), Gaps = 70/609 (11%)

Query: 58  WSQSNDCCTWS---GVDCDEAGRVIGLDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMF 114
           W+ + +   W    GVD D  GRV GL L+       + ++  +  L  L+ L+   +  
Sbjct: 302 WNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDA--IGQLTELKVLSFGTHSE 359

Query: 115 NATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPN 174
             +    G   LT   +    +        + +    RL   DL        P       
Sbjct: 360 TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419

Query: 175 LSGLLQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKL 234
            S +      L++  +         I   +A+  L  KLQ++  ++   +          
Sbjct: 420 DSRIS-----LKDTQIGNLTNRITFIS--KAIQRL-TKLQIIYFANSPFTYDN-----IA 466

Query: 235 QSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNS 294
                   D            ++  +LT + L +       P+ +  +  L++L+++ N 
Sbjct: 467 VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526

Query: 295 LLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDG-SIPTSLAN 353
                        S   L    T     L D       +    +     +      SL  
Sbjct: 527 G-----------ISAAQLKADWTR----LADDEDTGPKIQIFYMGYNNLEEFPASASLQK 571

Query: 354 LTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYN 413
           + +L  LD   NK    + +   +  LT L L YN +   I          +  +   +N
Sbjct: 572 MVKLGLLDCVHNKVRH-LEAFGTNVKLTDLKLDYNQI-EEIPEDFCAFTDQVEGLGFSHN 629

Query: 414 SLNGSIPGSLF--SLPMLQQLQLAENKFGGLIPE----FSNASSSALDTIDLSGNRLEGP 467
            L   IP      S+ ++  +  + NK G           +       T+ LS N ++  
Sbjct: 630 KLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF 688

Query: 468 IPMSIFDLRNLKILILSSNKL------NGTVQLAAIQRLHNLAKLELSYNNLT-VNAGSD 520
                     +  +ILS+N +      +   +    +  + L  ++L +N LT ++    
Sbjct: 689 PTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFR 748

Query: 521 SSFPSQVRTLRLASCKLRVIP-------NLKNQSKLFNLDLSDNQISGEIPNWVWEIGN- 572
           ++    +  + ++       P        LK        D   N+I  + P     I   
Sbjct: 749 ATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT---GITTC 805

Query: 573 VSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQ-----GNIPYPPPKAVLVDYS 627
            SL  L +  N +  +     +     + +LD+  N           PY      ++ Y 
Sbjct: 806 PSLIQLQIGSNDIRKV--DEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYD 861

Query: 628 NNSFTSSIP 636
                    
Sbjct: 862 KTQDIRGCD 870

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  217 bits (553), Expect = 1e-58
 Identities = 95/660 (14%), Positives = 175/660 (26%), Gaps = 129/660 (19%)

Query: 303 FPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDL 362
              N  +  L L+     G +PD+IG L  L  L         S              + 
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378

Query: 363 SFNKFVGPIPS--LHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLN---G 417
             ++         L   + L   DL  +A+         +  S +   D +  +L     
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT 438

Query: 418 SIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRN 477
            I  ++  L  LQ +  A + F               +  +    +      +S  +L++
Sbjct: 439 FISKAIQRLTKLQIIYFANSPFTYDNIAVD------WEDANSDYAKQYENEELSWSNLKD 492

Query: 478 LKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKL 537
           L  + L +      +    +  L  L  L ++ N                 +        
Sbjct: 493 LTDVELYNCPNMTQLP-DFLYDLPELQSLNIACNRGI--------------SAAQLKADW 537

Query: 538 RVIPN-LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISD 596
             + +      K+    +  N +  E P        V L  L+  HN +  L+   +   
Sbjct: 538 TRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE---AFGT 593

Query: 597 LSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSI 656
              +T L L  NQ+                        IP+D   F         S+N +
Sbjct: 594 NVKLTDLKLDYNQI----------------------EEIPEDFCAFTDQVEGLGFSHNKL 631

Query: 657 TGVIPET-LCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPG 715
             +           +  +D S NK+       +    +    +N                
Sbjct: 632 KYIPNIFNAKSVYVMGSVDFSYNKIGS-EGRNISCSMDDYKGINAS-------------- 676

Query: 716 NCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRD-------TFPWWLENISSLR 768
                T+ L+ N++     +  A    +  + L NN +               +N   L 
Sbjct: 677 -----TVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLT 731

Query: 769 VLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSN 828
            + LR N    ++S      + P L  +D++ N                           
Sbjct: 732 TIDLRFNKL-TSLSDDFRATTLPYLSNMDVSYN--------------------------C 764

Query: 829 FKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLK 888
           F     + L  +                    K   I    D   N      P  I    
Sbjct: 765 FSSFPTQPLNSSQL------------------KAFGIRHQRDAEGNRILRQWPTGITTCP 806

Query: 889 SLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNL 948
           SL  L +  N +   +   +    QL  LD++ N         +          L ++  
Sbjct: 807 SLIQLQIGSNDIRK-VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  180 bits (457), Expect = 1e-46
 Identities = 84/687 (12%), Positives = 181/687 (26%), Gaps = 129/687 (18%)

Query: 310 RTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVG 369
             L   N  +     ++  +  N +  +  L  +       L N  ++  L L+     G
Sbjct: 279 EALDGKNWRYYSGTINNTIHSLNWN-FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKG 337

Query: 370 PIP-SLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPM 428
            +P ++     L  L    ++   +      E L+  +  + ++          L     
Sbjct: 338 RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQR 397

Query: 429 LQQLQLAENKFGGLIPEFSNASSSALD----TIDLSGNRLEGPIPMSIFDLRNLKILILS 484
           L    L ++              S +      I    NR+   I  +I  L  L+I+  +
Sbjct: 398 LNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFA 456

Query: 485 SNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASC-KLRVIPN- 542
           ++               +       Y     N     S    +  + L +C  +  +P+ 
Sbjct: 457 NSPFTY------DNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF 510

Query: 543 LKNQSKLFNLDLSDNQISGEIPNWVW------EIGN-VSLQYLNLSHNLLSSLQRPFSIS 595
           L +  +L +L+++ N+                +      +Q   + +N L       S+ 
Sbjct: 511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQ 570

Query: 596 DLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNS 655
            +  + +LD   N++                          +  G  V  T    L  N 
Sbjct: 571 KMVKLGLLDCVHNKV-----------------------RHLEAFGTNVKLT-DLKLDYNQ 606

Query: 656 ITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPG 715
           I  +  +       +  L  S NKL                                 P 
Sbjct: 607 IEEIPEDFCAFTDQVEGLGFSHNKLK------------------------------YIPN 636

Query: 716 NCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENIS-----SLRVL 770
                                  +   +  +D   NKI         ++      +   +
Sbjct: 637 IFNAK------------------SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV 678

Query: 771 VLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFK 830
            L  N      +  E   +   +  + L++N                 + +      +  
Sbjct: 679 TLSYNEIQKFPT--ELFATGSPISTIILSNNLMTS-------------IPENSLKPKDGN 723

Query: 831 DVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSL 890
             +   L   D  +    +++       L  +    +++D S N F    P +      L
Sbjct: 724 YKNTYLLTTIDLRFNKLTSLSDDFRATTLPYL----SNMDVSYNCFSS-FPTQPLNSSQL 778

Query: 891 HGLNLSQ------NALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLS 944
               +        N +    P+ I     L  L +  N +   +  +L     L  L+++
Sbjct: 779 KAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIA 835

Query: 945 HNNL-VGKIPISTQLQSFLATSFEGNK 970
            N      +                +K
Sbjct: 836 DNPNISIDVTSVCPYIEAGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.9 bits (158), Expect = 1e-10
 Identities = 31/282 (10%), Positives = 72/282 (25%), Gaps = 66/282 (23%)

Query: 691 MSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGN 750
           +  I   L+ +              +      +   +  G      L N   +  L L  
Sbjct: 274 LKAIWEALDGKNWRYYSGTINNTIHSLNW-NFNKELDMWGDQPGVDLDNNGRVTGLSLAG 332

Query: 751 NKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQK 810
              +   P  +  ++ L+VL   ++S   +   R  GD      + +   +       + 
Sbjct: 333 FGAKGRVPDAIGQLTELKVLSFGTHSETVSG--RLFGDEELTPDMSEERKHRIRMHYKKM 390

Query: 811 CITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSID 870
            +                                             + + +  +     
Sbjct: 391 FLDY------------------------------------------DQRLNLSDLLQDAI 408

Query: 871 FSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSG---- 926
                      +    LK     NL+ N +T  I  AI  L +L+ +  + +  +     
Sbjct: 409 NRNPEMKPIKKDSRISLKDTQIGNLT-NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIA 466

Query: 927 ---------------QIPIQLANLTFLSFLNLSHNNLVGKIP 953
                             +  +NL  L+ + L +   + ++P
Sbjct: 467 VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP 508

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  239 bits (613), Expect = 2e-68
 Identities = 100/574 (17%), Positives = 187/574 (32%), Gaps = 43/574 (7%)

Query: 168 LKLENPNLSGLLQNL-AELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGP 226
              EN  L+ +   L      L      +           S L   L  L L+ C +   
Sbjct: 17  YNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNT---TFSRL-INLTFLDLTRCQIYWI 72

Query: 227 IHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLE 286
              +      L  + L  N L+      L+    L  L    + ++      +    TLE
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132

Query: 287 TLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCY-FDG 345
           +L L  N +    LP       L+ L   N     +  + + +L+  + L L L      
Sbjct: 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192

Query: 346 SIPTSLANLTQLVYLDLSFNKFVGPIPSLHMS---KNLTHLDLSYNALPGAISST-DWEH 401
            I     +      L+    + +  I     +   ++L               +  +   
Sbjct: 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252

Query: 402 LSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSG 461
             ++  ++L+ +        +      LQ+L L       L       S+  L  + LS 
Sbjct: 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLST--LKKLVLSA 310

Query: 462 NRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDS 521
           N+ E    +S  +  +L  L +  N     +    ++ L NL +L+LS++++  +   + 
Sbjct: 311 NKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370

Query: 522 SFP--SQVRTLRLASCKLRVIPN--LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQY 577
                S +++L L+  +   +     K   +L  LDL+  ++  +     ++     L+ 
Sbjct: 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ-NLHLLKV 429

Query: 578 LNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPD 637
           LNLSH+LL           L  +  L+L  N                             
Sbjct: 430 LNLSHSLLDISS-EQLFDGLPALQHLNLQGNHFPKGNIQKT------------------- 469

Query: 638 DIGNFVSFT--LFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEIL 695
              +  +        LS   ++ +        K +  +DLS N+L+      L  +  I 
Sbjct: 470 --NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI- 526

Query: 696 GVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQL 729
             LNL  N +S  L    P      T++L  N L
Sbjct: 527 -YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  236 bits (603), Expect = 5e-67
 Identities = 120/583 (20%), Positives = 210/583 (36%), Gaps = 55/583 (9%)

Query: 64  CCTWSGVDCDEAGRVIGLDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSG- 122
             +       E  +    +     ++               + L  +FN+     I +  
Sbjct: 2   TSSDQKCIEKEVNKT--YNCENLGLNEIPGTLPN-----STECLEFSFNVL--PTIQNTT 52

Query: 123 LGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNR--------FGAPLKLENPN 174
              L NLT L+L+                RL TL L++ N            P  L++  
Sbjct: 53  FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA-NPLIFMAETALSGPKALKHLF 111

Query: 175 LS---------GLLQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSG 225
                        L N   L  LYL   +IS+  +            L+VL   +  +  
Sbjct: 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK----LKVLDFQNNAIHY 167

Query: 226 PIHPSLAKLQSLSVIRLDQNDL-LSPVPEFLADFFNLTSLRLSHSRLNGTFPEKI--LQV 282
                ++ LQ  + + L+ N   ++ +     D     SL    ++      + +    +
Sbjct: 168 LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTI 227

Query: 283 HTLETLDLSGNSL--LQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLAL 340
            +L            +  ++ +     S+ ++ L    F  +  ++      L  LDL  
Sbjct: 228 QSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTA 287

Query: 341 CYFDGSIPTSLANLTQLVYLDLSFNKFVGPIP-SLHMSKNLTHLDLSYNALPGAISSTDW 399
            +    +P+ L  L+ L  L LS NKF      S     +LTHL +  N     + +   
Sbjct: 288 THL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346

Query: 400 EHLSNLVYVDLRYNSLNGS--IPGSLFSLPMLQQLQLAENKFGGLIPE-FSNASSSALDT 456
           E+L NL  +DL ++ +  S      L +L  LQ L L+ N+   L  E F       L+ 
Sbjct: 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ--LEL 404

Query: 457 IDLSGNRLEGPIPMSIF-DLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLT- 514
           +DL+  RL+     S F +L  LK+L LS + L+          L  L  L L  N+   
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI-SSEQLFDGLPALQHLNLQGNHFPK 463

Query: 515 VNAGSDSSFP--SQVRTLRLASCKLRVIPN--LKNQSKLFNLDLSDNQISGEIPNWVWEI 570
            N    +S     ++  L L+ C L  I      +   + ++DLS N+++         +
Sbjct: 464 GNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA---L 520

Query: 571 GNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGN 613
            ++   YLNL+ N +S +  P  +  LS    ++L  N L   
Sbjct: 521 SHLKGIYLNLASNHISIIL-PSLLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  229 bits (587), Expect = 6e-65
 Identities = 114/675 (16%), Positives = 209/675 (30%), Gaps = 132/675 (19%)

Query: 281 QVHTLETLDLSGNSLLQ--GSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDL 338
           +    +T +     L +  G+LP     +S   L  S      +   +   L NL+ LDL
Sbjct: 10  EKEVNKTYNCENLGLNEIPGTLP-----NSTECLEFSFNVLPTIQNTTFSRLINLTFLDL 64

Query: 339 ALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIP-SLHMSKNLTHLDLSYNALPGAISST 397
             C        +  +  +L  L L+ N  +     +L   K L HL      +   I   
Sbjct: 65  TRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS-IDFI 123

Query: 398 DWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPE-FSNASSSALDT 456
              +   L  + L  N ++       F    L+ L    N    L  E  S+   +   +
Sbjct: 124 PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS 183

Query: 457 IDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVN 516
           ++L+GN + G I    FD    + L     +    +          L    +        
Sbjct: 184 LNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVI-------FKGLKNSTIQ------- 228

Query: 517 AGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQ 576
                                           L+     D       P     +  +S++
Sbjct: 229 -------------------------------SLWLGTFEDMDDEDISPAVFEGLCEMSVE 257

Query: 577 YLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIP 636
            +NL  +   ++    +    S +  LDL +  L                      S +P
Sbjct: 258 SINLQKHYFFNIS-SNTFHCFSGLQELDLTATHL----------------------SELP 294

Query: 637 DDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILG 696
             +    +      LS N    +   +      L  L +  N    ++ T  ++  E L 
Sbjct: 295 SGLVGLSTLK-KLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353

Query: 697 VLNLRGNSL--SGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIR 754
            L+L  + +  S   ++       L +L+L+ N+      ++   C  L +LDL   +++
Sbjct: 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413

Query: 755 DTFPW-WLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCIT 813
                   +N+  L+VL L  +    +     +G   P LQ ++L  N+F          
Sbjct: 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG--LPALQHLNLQGNHF---------- 461

Query: 814 SWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSR 873
                                  L                       + L     +  S 
Sbjct: 462 -------------PKGNIQKTNSL-----------------------QTLGRLEILVLSF 485

Query: 874 NNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLA 933
            +           LK ++ ++LS N LT     A+ +L+ +  L+L+ NH+S  +P  L 
Sbjct: 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLP 544

Query: 934 NLTFLSFLNLSHNNL 948
            L+    +NL  N L
Sbjct: 545 ILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  223 bits (571), Expect = 9e-63
 Identities = 97/557 (17%), Positives = 181/557 (32%), Gaps = 44/557 (7%)

Query: 260 NLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNF 319
           +   L  S + L         ++  L  LDL+   +       F     L TL+L+    
Sbjct: 34  STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93

Query: 320 SGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVG-PIPSLHMSK 378
             +   ++   K L  L              L N   L  L L  N      +P    ++
Sbjct: 94  IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE 153

Query: 379 NLTHLDLSYNALPGAISSTDWEHLSNL--VYVDLRYNSLNGSIPGSLFSLPMLQQLQLAE 436
            L  LD   NA+   +S  D   L     + ++L  N +   I    F   + Q L    
Sbjct: 154 KLKVLDFQNNAIHY-LSKEDMSSLQQATNLSLNLNGNDI-AGIEPGAFDSAVFQSLNFGG 211

Query: 437 NKFGGLIPE-FSNASSSALDTIDLSGNRLEGPIPMSIFDLR--NLKILILSSNKLNGTVQ 493
            +   +I +   N++  +L          E   P     L   +++ + L  +     + 
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN-IS 270

Query: 494 LAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPN--LKNQSKLFN 551
                    L +L+L+  +L+    S     S ++ L L++ K   +      N   L +
Sbjct: 271 SNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH 329

Query: 552 LDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQ-RPFSISDLSPITVLDLHSNQL 610
           L +  N    E+     E    +L+ L+LSH+ + +       + +LS +  L+L     
Sbjct: 330 LSIKGNTKRLELGTGCLE-NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL----- 383

Query: 611 QGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPET-LCRAKY 669
                           S N   S   +             L+   +     ++       
Sbjct: 384 ----------------SYNEPLSLKTEAFKECPQLE-LLDLAFTRLKVKDAQSPFQNLHL 426

Query: 670 LLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSV---TFPGNCGLHTLDLNG 726
           L VL+LS + L          +   L  LNL+GN           +      L  L L+ 
Sbjct: 427 LKVLNLSHSLLDISSEQLFDGLPA-LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485

Query: 727 NQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCREN 786
             L      +  + + +  +DL +N++  +    L ++  +  L L SN     +     
Sbjct: 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP--SL 542

Query: 787 GDSWPKLQIVDLASNNF 803
                + + ++L  N  
Sbjct: 543 LPILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  199 bits (508), Expect = 2e-54
 Identities = 109/604 (18%), Positives = 186/604 (30%), Gaps = 113/604 (18%)

Query: 360 LDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSI 419
            +         IP   +  +   L+ S+N LP  I +T +  L NL ++DL    +    
Sbjct: 17  YNCENLGLNE-IPG-TLPNSTECLEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQIYWIH 73

Query: 420 PGSLFSLPMLQQLQLAENKFGGLIPE-FSNASSSALDTIDLSGNRLEGPIPMSIFDLRNL 478
             +  S   L  L L  N    +     S   +  L  +      +     + + + + L
Sbjct: 74  EDTFQSQHRLDTLVLTANPLIFMAETALSGPKA--LKHLFFIQTGISSIDFIPLHNQKTL 131

Query: 479 KILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLT-VNAGSDSSFPS-QVRTLRLASCK 536
           + L L SN ++  ++L        L  L+   N +  ++    SS       +L L    
Sbjct: 132 ESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190

Query: 537 LRVIP-NLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSIS 595
           +  I     + +   +L+    Q    I   +      SL                    
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM---------DDE 241

Query: 596 DLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNS 655
           D+SP     L    ++                                      +L  + 
Sbjct: 242 DISPAVFEGLCEMSVE------------------------------------SINLQKHY 265

Query: 656 ITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPG 715
              +   T      L  LDL+   LS ++P+ L+ +S  L  L L  N       ++   
Sbjct: 266 FFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLST-LKKLVLSANKFENLCQISASN 323

Query: 716 NCGLHTLDLNGNQLGGTV-PKSLANCRNLVVLDLGNNKIR--DTFPWWLENISSLRVLVL 772
              L  L + GN     +    L N  NL  LDL ++ I   D     L N+S L+ L L
Sbjct: 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383

Query: 773 RSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDV 832
             N      +  E     P+L+++DLA      +  Q    +                  
Sbjct: 384 SYNEPLSLKT--EAFKECPQLELLDLAFTRLKVKDAQSPFQN------------------ 423

Query: 833 HFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHG 892
                                         L +   ++ S +  D    +    L +L  
Sbjct: 424 ------------------------------LHLLKVLNLSHSLLDISSEQLFDGLPALQH 453

Query: 893 LNLSQNALTGPI---PSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLV 949
           LNL  N          +++  L +LE L LS   LS        +L  ++ ++LSHN L 
Sbjct: 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513

Query: 950 GKIP 953
               
Sbjct: 514 SSSI 517

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  181 bits (461), Expect = 3e-48
 Identities = 97/513 (18%), Positives = 168/513 (32%), Gaps = 50/513 (9%)

Query: 456 TIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTV 515
           T +     L   IP ++    + + L  S N L  T+Q     RL NL  L+L+   +  
Sbjct: 16  TYNCENLGLNE-IPGTLP--NSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYW 71

Query: 516 NAGSDSSFP--SQVRTLRLASCKLRVIPN--LKNQSKLFNLDLSDNQISGEIPNWVWEIG 571
               + +F    ++ TL L +  L  +    L     L +L      IS      +    
Sbjct: 72  I--HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLH--N 127

Query: 572 NVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPY-----PPPKAVLVDY 626
             +L+ L L  N +SS++ P        + VLD  +N +                + ++ 
Sbjct: 128 QKTLESLYLGSNHISSIKLP-KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186

Query: 627 SNNSFTSSIPDDIGNFVSF-TLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMP 685
           + N     I     +   F +L F  + N +           + L +            P
Sbjct: 187 NGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISP 245

Query: 686 TCLIKMSEI-LGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLV 744
                + E+ +  +NL+ +      S TF    GL  LDL    L   +P  L     L 
Sbjct: 246 AVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLK 304

Query: 745 VLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFG 804
            L L  NK  +       N  SL  L ++ N+    +      ++   L+ +DL+ ++  
Sbjct: 305 KLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG-TGCLENLENLRELDLSHDDIE 363

Query: 805 GRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILS 864
                          + +    S+ + ++  + +                L+ E  K   
Sbjct: 364 TSDCC----------NLQLRNLSHLQSLNLSYNEP-------------LSLKTEAFKECP 400

Query: 865 IFTSIDFSRNNFDGPIPEEI-GRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNH 923
               +D +         +     L  L  LNLS + L          L  L+ L+L  NH
Sbjct: 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460

Query: 924 LSGQIPIQ---LANLTFLSFLNLSHNNLVGKIP 953
                  +   L  L  L  L LS  +L     
Sbjct: 461 FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  134 bits (339), Expect = 9e-33
 Identities = 68/420 (16%), Positives = 125/420 (29%), Gaps = 73/420 (17%)

Query: 552 LDLSDN---QISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSN 608
            +  +    +I G +PN        S + L  S N+L ++Q   + S L  +T LDL   
Sbjct: 17  YNCENLGLNEIPGTLPN--------STECLEFSFNVLPTIQ-NTTFSRLINLTFLDLTRC 67

Query: 609 QLQGNIP---YPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLC 665
           Q+            +   +  + N         +    +           I+ +    L 
Sbjct: 68  QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALK-HLFFIQTGISSIDFIPLH 126

Query: 666 RAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLH--TLD 723
             K L  L L  N +S           + L VL+ + N++                 +L+
Sbjct: 127 NQKTLESLYLGSNHISSIKLPKGFPTEK-LKVLDFQNNAIHYLSKEDMSSLQQATNLSLN 185

Query: 724 LNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLEN--ISSLRVLVLRSNSFYGNI 781
           LNGN +   +     +      L+ G  +        L+N  I SL +            
Sbjct: 186 LNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244

Query: 782 SCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIAD 841
                G     ++ ++L  + F                +        F  +         
Sbjct: 245 PAVFEGLCEMSVESINLQKHYFF---------------NISSNTFHCFSGLQ-------- 281

Query: 842 FYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALT 901
                                      +D +  +    +P  +  L +L  L LS N   
Sbjct: 282 --------------------------ELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFE 314

Query: 902 GPIPSAIGNLQQLESLDLSMNHLSGQIPIQ-LANLTFLSFLNLSHNNLVGKIPISTQLQS 960
                +  N   L  L +  N    ++    L NL  L  L+LSH+++      + QL++
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 66.2 bits (162), Expect = 3e-11
 Identities = 40/285 (14%), Positives = 83/285 (29%), Gaps = 46/285 (16%)

Query: 697 VLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDT 756
             N     L+  +  T P +     L+ + N L      + +   NL  LDL   +I   
Sbjct: 16  TYNCENLGLN-EIPGTLPNS--TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 757 FPWWLENISSLRVLVLRSNSFYGNISCRENGDSW----PKLQIVDLASNNFGGRVPQKCI 812
                ++   L  LVL +N            ++       L+ +          +    +
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFMA------ETALSGPKALKHLFFIQTGISS-IDFIPL 125

Query: 813 TSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFS 872
            +           Q   + ++     I               +++           +DF 
Sbjct: 126 HN-----------QKTLESLYLGSNHI-------------SSIKLPKGFPTEKLKVLDFQ 161

Query: 873 RNNFDGPIPEEIGRLKSLHG--LNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPI 930
            N       E++  L+      LNL+ N + G I     +    +SL+         I  
Sbjct: 162 NNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFK 220

Query: 931 QLAN-----LTFLSFLNLSHNNLVGKIPISTQLQSFLATSFEGNK 970
            L N     L   +F ++   ++   +       S  + + + + 
Sbjct: 221 GLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY 265

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 61.2 bits (149), Expect = 1e-09
 Identities = 21/114 (18%), Positives = 42/114 (36%), Gaps = 2/114 (1%)

Query: 867 TSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSG 926
             + F +          +   K+L  L L  N ++          ++L+ LD   N +  
Sbjct: 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY 167

Query: 927 QIPIQLANLTFLS--FLNLSHNNLVGKIPISTQLQSFLATSFEGNKGLCGPPLN 978
                +++L   +   LNL+ N++ G  P +     F + +F G + L      
Sbjct: 168 LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKG 221

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  196 bits (501), Expect = 3e-56
 Identities = 73/258 (28%), Positives = 116/258 (44%), Gaps = 11/258 (4%)

Query: 260 NLTSLRLSHSRLNGTF--PEKILQVHTLETLDLSGNSLLQGSLPD-FPKNSSLRTLMLSN 316
            + +L LS   L   +  P  +  +  L  L + G + L G +P    K + L  L +++
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 317 TNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPS--L 374
           TN SG +PD +  +K L  LD +     G++P S+++L  LV +    N+  G IP    
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170

Query: 375 HMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQL 434
             SK  T + +S N L G I  T   +L NL +VDL  N L G       S    Q++ L
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFA-NL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228

Query: 435 AENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQL 494
           A+N     + +   + +  L+ +DL  NR+ G +P  +  L+ L  L +S N L G +  
Sbjct: 229 AKNSLAFDLGKVGLSKN--LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-- 284

Query: 495 AAIQRLHNLAKLELSYNN 512
                L        + N 
Sbjct: 285 PQGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  175 bits (447), Expect = 5e-49
 Identities = 83/327 (25%), Positives = 134/327 (40%), Gaps = 43/327 (13%)

Query: 118 EIPSGLGSLTNL----TNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENP 173
           +I   LG+ T L       +  N  + G +    +   R+  LDLS LN           
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPK------PY 66

Query: 174 NLSGLLQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAK 233
            +   L NL  L  LY+ G N                            L GPI P++AK
Sbjct: 67  PIPSSLANLPYLNFLYIGGIN---------------------------NLVGPIPPAIAK 99

Query: 234 LQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGN 293
           L  L  + +   ++   +P+FL+    L +L  S++ L+GT P  I  +  L  +   GN
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159

Query: 294 SLLQGSLPD-FPKNSSLRT-LMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSL 351
             + G++PD +   S L T + +S    +G +P +  NL NL+ +DL+    +G      
Sbjct: 160 R-ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLF 217

Query: 352 ANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLR 411
            +      + L+ N     +  + +SKNL  LDL  N + G +       L  L  +++ 
Sbjct: 218 GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG-LTQLKFLHSLNVS 276

Query: 412 YNSLNGSIPGSLFSLPMLQQLQLAENK 438
           +N+L G IP    +L        A NK
Sbjct: 277 FNNLCGEIP-QGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  173 bits (440), Expect = 5e-48
 Identities = 96/366 (26%), Positives = 136/366 (37%), Gaps = 74/366 (20%)

Query: 30  CQSDQQSLLLQMKSSLVFNSSLSFRMVQWSQSNDCC--TWSGVDCDEAG---RVIGLDLS 84
           C    +  LLQ+K  L   ++LS     W  + DCC  TW GV CD      RV  LDLS
Sbjct: 3   CNPQDKQALLQIKKDLGNPTTLS----SWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLS 58

Query: 85  EESISAGIDNSSPLFSLKYLQSLNLA-FNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQI 143
             ++       S L +L YL  L +   N      IP  +  LT L  L +++   +G I
Sbjct: 59  GLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAI 117

Query: 144 PIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWC 203
           P  +S +  LVTLD S  N            LSG                 +        
Sbjct: 118 PDFLSQIKTLVTLDFSY-N-----------ALSG----------------TLPP------ 143

Query: 204 QALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLS-VIRLDQNDLLSPVPEFLADFFNLT 262
            ++SSL P L  ++     +SG I  S      L   + + +N L   +P   A+  NL 
Sbjct: 144 -SISSL-PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-LNLA 200

Query: 263 SLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGV 322
            + LS + L G            + + L+ NS L   L                      
Sbjct: 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS-LAFDLG--------------------- 238

Query: 323 LPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTH 382
               +G  KNL+ LDL      G++P  L  L  L  L++SFN   G IP     +    
Sbjct: 239 ---KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDV 295

Query: 383 LDLSYN 388
              + N
Sbjct: 296 SAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  171 bits (436), Expect = 1e-47
 Identities = 75/367 (20%), Positives = 125/367 (34%), Gaps = 85/367 (23%)

Query: 346 SIPTSLANLTQLV----YLDLSFNKFVGPIP-SLHMSKNLTHLDLSYNALPGAIS-STDW 399
            I   L N T L       D     ++G +  +   +  + +LDLS   LP      +  
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 400 EHLSNLVYVDLR-YNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIP-EFSNASSSALDTI 457
            +L  L ++ +   N+L G IP ++  L  L  L +      G IP   S   +  L T+
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT--LVTL 130

Query: 458 DLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNA 517
           D S N L G +P SI  L NL  +    N+++G +                         
Sbjct: 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI------------------------- 165

Query: 518 GSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQY 577
                 P                 +         + +S N+++G+IP       N++L +
Sbjct: 166 ------PDS-------------YGSFSKLFTS--MTISRNRLTGKIPP---TFANLNLAF 201

Query: 578 LNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPD 637
           ++LS N+L                 + L  N L  ++                       
Sbjct: 202 VDLSRNMLEG-DASVLFGSDKNTQKIHLAKNSLAFDLG---------------------- 238

Query: 638 DIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGV 697
            +G   +      L NN I G +P+ L + K+L  L++S N L G++P           V
Sbjct: 239 KVGLSKNLN-GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQR--FDV 295

Query: 698 LNLRGNS 704
                N 
Sbjct: 296 SAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  169 bits (431), Expect = 7e-47
 Identities = 72/381 (18%), Positives = 117/381 (30%), Gaps = 111/381 (29%)

Query: 630 SFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLI 689
                + +      S+       N +  GV+ +T  +   +  LDLS   L    P    
Sbjct: 13  QIKKDLGNP-TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPI--- 68

Query: 690 KMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDL-NGNQLGGTVPKSLANCRNLVVLDL 748
                L  L                    L+ L +   N L G +P ++A    L  L +
Sbjct: 69  --PSSLANLP------------------YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108

Query: 749 GNNKIRDTFPWWLENISSLRVLVLRSNSFYGNI-----SCRENGDSWPKLQIVDLASNNF 803
            +  +    P +L  I +L  L    N+  G +     S        P L  +    N  
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL-------PNLVGITFDGNRI 161

Query: 804 GGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKIL 863
            G +P                                                       
Sbjct: 162 SGAIPD------------------------------------------------SYGSFS 173

Query: 864 SIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNH 923
            +FTS+  SRN   G IP     L +L  ++LS+N L G      G+ +  + + L+ N 
Sbjct: 174 KLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232

Query: 924 LSGQIPIQLANLTFLSFLNLSHNNLVGKIPIS------------------------TQLQ 959
           L+  +  ++     L+ L+L +N + G +P                            LQ
Sbjct: 233 LAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ 291

Query: 960 SFLATSFEGNKGLCGPPLNVC 980
            F  +++  NK LCG PL  C
Sbjct: 292 RFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  155 bits (394), Expect = 6e-42
 Identities = 76/307 (24%), Positives = 118/307 (38%), Gaps = 57/307 (18%)

Query: 451 SSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQL-AAIQRLHNLAKLELS 509
           SS L T D       G +  +      +  L LS   L     + +++  L  L  L + 
Sbjct: 25  SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIG 84

Query: 510 -YNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVW 568
             NNL          P  +  L                ++L  L ++   +SG IP+   
Sbjct: 85  GINNLV------GPIPPAIAKL----------------TQLHYLYITHTNVSGAIPD--- 119

Query: 569 EIGN-VSLQYLNLSHNLLS-SLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDY 626
            +    +L  L+ S+N LS +L  P SIS L  +  +    N++ G              
Sbjct: 120 FLSQIKTLVTLDFSYNALSGTL--PPSISSLPNLVGITFDGNRISG-------------- 163

Query: 627 SNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPT 686
                  +IPD  G+F       ++S N +TG IP T      L  +DLS+N L G    
Sbjct: 164 -------AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASV 215

Query: 687 CLIKMSEILGVLNLRGNSLSGTL-SVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVV 745
                      ++L  NSL+  L  V    N  L+ LDL  N++ GT+P+ L   + L  
Sbjct: 216 LFGSDKN-TQKIHLAKNSLAFDLGKVGLSKN--LNGLDLRNNRIYGTLPQGLTQLKFLHS 272

Query: 746 LDLGNNK 752
           L++  N 
Sbjct: 273 LNVSFNN 279

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  149 bits (379), Expect = 5e-40
 Identities = 57/264 (21%), Positives = 109/264 (41%), Gaps = 12/264 (4%)

Query: 551 NLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLS-SLQRPFSISDLSPITVLDLHS-N 608
             D  +    G + +   +   V    L+LS   L      P S+++L  +  L +   N
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRV--NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN 87

Query: 609 QLQGNIPYP---PPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLC 665
            L G IP       +   +  ++ + + +IPD +    +       S N+++G +P ++ 
Sbjct: 88  NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV-TLDFSYNALSGTLPPSIS 146

Query: 666 RAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLN 725
               L+ +    N++SG +P      S++   + +  N L+G +  TF  N  L  +DL+
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF-ANLNLAFVDLS 205

Query: 726 GNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRE 785
            N L G       + +N   + L  N +       +    +L  L LR+N  YG +   +
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLP--Q 262

Query: 786 NGDSWPKLQIVDLASNNFGGRVPQ 809
                  L  ++++ NN  G +PQ
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIPQ 286

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  190 bits (484), Expect = 2e-51
 Identities = 99/536 (18%), Positives = 167/536 (31%), Gaps = 50/536 (9%)

Query: 284 TLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYF 343
           + + LDLS N L       F     L+ L LS      +   +  +L +LS L L     
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 344 DGSIPTSLANLTQLVYLDLSFNKFVG-PIPSLHMSKNLTHLDLSYNALPGAISSTDWEHL 402
                 + + L+ L  L              +   K L  L++++N +        + +L
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 403 SNLVYVDLRYNSLNGSIPGSLFSLPMLQ----QLQLAENKFGGLIPE-FSNASSSALDTI 457
           +NL ++DL  N +       L  L  +      L L+ N    + P  F       L  +
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR---LHKL 205

Query: 458 DLSGNRLEGPIPMSIFD-LRNLKILILSSNKLNGTVQLAAIQR--LHNLAKLELSYNNLT 514
            L  N     +  +    L  L++  L   +      L    +  L  L  L +    L 
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 515 VNAGSDSSFPS------QVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVW 568
                             V +  L S  +  + +        +L+L + +          
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKF-----GQFP 320

Query: 569 EIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSN 628
            +   SL+ L  + N   +    FS  DL  +  LDL  N L                  
Sbjct: 321 TLKLKSLKRLTFTSNKGGNA---FSEVDLPSLEFLDLSRNGLS----------------- 360

Query: 629 NSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCL 688
                          +   +  LS N +   +       + L  LD   + L       +
Sbjct: 361 ---FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416

Query: 689 IKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPK-SLANCRNLVVLD 747
                 L  L++         +  F G   L  L + GN              RNL  LD
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476

Query: 748 LGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNF 803
           L   ++    P    ++SSL+VL + SN    ++      D    LQ + L +N +
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVP-DGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  182 bits (465), Expect = 5e-49
 Identities = 116/558 (20%), Positives = 195/558 (34%), Gaps = 72/558 (12%)

Query: 236 SLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSL 295
           S   + L  N L          F  L  L LS   +          +  L TL L+GN +
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 296 LQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYF-DGSIPTSLANL 354
              +L  F   SSL+ L+   TN + +    IG+LK L  L++A        +P   +NL
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 355 TQLVYLDLSFNKFVGPIPSL-----HMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVD 409
           T L +LDLS NK      +       M      LDLS N +              L  + 
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF--KEIRLHKLT 206

Query: 410 LRYNSLNGSIPGSLFS-LPMLQQLQLAENKFGGL-------IPEFSNASSSALDTIDLSG 461
           LR N  + ++  +    L  L+  +L   +F                  +  ++   L+ 
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266

Query: 462 NRLEGPIPMSIFD-LRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSD 520
                   + +F+ L N+    L S  +      +      +L  +   +          
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP------ 320

Query: 521 SSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNL 580
           +     ++ L   S K     +  +   L  LDLS N +S +      + G  SL+YL+L
Sbjct: 321 TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 581 SHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIG 640
           S N + ++    +   L  +  LD   + L+                             
Sbjct: 381 SFNGVITM--SSNFLGLEQLEHLDFQHSNLK----------------------------- 409

Query: 641 NFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNL 700
               F++F SL N                L+ LD+S              +S  L VL +
Sbjct: 410 QMSEFSVFLSLRN----------------LIYLDISHTHTRVAFNGIFNGLSS-LEVLKM 452

Query: 701 RGNSLSGTL-SVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPW 759
            GNS         F     L  LDL+  QL    P +  +  +L VL++ +N+++     
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512

Query: 760 WLENISSLRVLVLRSNSF 777
             + ++SL+ + L +N +
Sbjct: 513 IFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  175 bits (445), Expect = 2e-46
 Identities = 104/589 (17%), Positives = 179/589 (30%), Gaps = 77/589 (13%)

Query: 170 LENPNLSGLLQNL-AELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIH 228
               N   +  NL    + L L    +   G     +  S  P+LQVL LS C +     
Sbjct: 14  CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSY---SFFSF-PELQVLDLSRCEIQTIED 69

Query: 229 PSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETL 288
            +   L  LS + L  N + S      +   +L  L    + L       I  + TL+ L
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 289 DLSGNSLLQGSLPD-FPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSI 347
           +++ N +    LP+ F   ++L  L LS+     +    +  L  +  L           
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL----------- 178

Query: 348 PTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVY 407
                     + LDLS N      P       L  L L  N     +  T  + L+ L  
Sbjct: 179 ---------NLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV 229

Query: 408 VDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGP 467
             L             F    L+ L                  +  ++   L+       
Sbjct: 230 HRLVLGEFRNEGNLEKFDKSALEGLC-----------------NLTIEEFRLAYLDYYLD 272

Query: 468 IPMSIFD-LRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQ 526
             + +F+ L N+    L S  +      +      +L  +   +          +     
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP------TLKLKS 326

Query: 527 VRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLS 586
           ++ L   S K     +  +   L  LDLS N +S +      + G  SL+YL+LS N + 
Sbjct: 327 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

Query: 587 SLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFT 646
           ++    +   L  +  LD   + L+                       + +    F+S  
Sbjct: 387 TM--SSNFLGLEQLEHLDFQHSNLK----------------------QMSEF-SVFLSLR 421

Query: 647 --LFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNS 704
             ++  +S+                L VL ++ N         +      L  L+L    
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 705 LSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKI 753
           L       F     L  L++  NQL            +L  + L  N  
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  175 bits (445), Expect = 2e-46
 Identities = 103/532 (19%), Positives = 182/532 (34%), Gaps = 46/532 (8%)

Query: 104 LQSLNLAFNMFNATEIPSG-LGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLN 162
            ++L+L+FN      + S    S   L  L+LS              ++ L TL L+  N
Sbjct: 30  TKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-N 86

Query: 163 RFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCY 222
                  L      G    L+ L++L     N++         +  L   L+ L+++   
Sbjct: 87  PI---QSLA----LGAFSGLSSLQKLVAVETNLA---SLENFPIGHL-KTLKELNVAHNL 135

Query: 223 L-SGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLT----SLRLSHSRLNGTFPE 277
           + S  +    + L +L  + L  N + S     L     +     SL LS + +N     
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQP 194

Query: 278 KILQVHTLETLDLSGNSLLQGSLPDFPKN-SSLRTLML------SNTNFSGVLPDSIGNL 330
              +   L  L L  N      +    +  + L    L      +  N       ++  L
Sbjct: 195 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 331 KNLSRLDLALCYFDGS---IPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSY 387
            NL+  +  L Y D     I      LT +    L        +     +    HL+L  
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVN 313

Query: 388 NALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGL-IPEF 446
                         L +L  +    N    +       LP L+ L L+ N          
Sbjct: 314 C----KFGQFPTLKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQ 367

Query: 447 SNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKL 506
           S+  +++L  +DLS N +   +  +   L  L+ L    + L    + +    L NL  L
Sbjct: 368 SDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426

Query: 507 ELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIP---NLKNQSKLFNLDLSDNQISGEI 563
           ++S+ +  V      +  S +  L++A    +             L  LDLS  Q+  ++
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QL 485

Query: 564 PNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIP 615
               +     SLQ LN++ N L S+        L+ +  + LH+N    + P
Sbjct: 486 SPTAFN-SLSSLQVLNMASNQLKSVP-DGIFDRLTSLQKIWLHTNPWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  166 bits (421), Expect = 3e-43
 Identities = 100/528 (18%), Positives = 172/528 (32%), Gaps = 67/528 (12%)

Query: 287 TLDLSGNSLLQGSLPDFPKN--SSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFD 344
           T      +  +      P N   S + L LS      +   S  +   L  LDL+ C   
Sbjct: 11  TYQCMELNFYK-----IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 65

Query: 345 GSIPTSLANLTQLVYLDLSFNKFVG-PIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLS 403
                +  +L+ L  L L+ N      + +     +L  L      L  ++ +    HL 
Sbjct: 66  TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLK 124

Query: 404 NLVYVDLRYNSLNGSIPGSLFS-LPMLQQLQLAENKFGGLIPE---FSNASSSALDTIDL 459
            L  +++ +N +        FS L  L+ L L+ NK   +        +       ++DL
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 460 SGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGS 519
           S N +   I    F    L  L L +N  +  V    IQ L  L    L           
Sbjct: 185 SLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF------ 237

Query: 520 DSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLN 579
                                              ++  +     + +  + N++++   
Sbjct: 238 ----------------------------------RNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 580 LSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVL--VDYSNNSFTSSIPD 637
           L++            + L+ ++   L S  ++  +           ++  N  F      
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTL 322

Query: 638 DIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGK-MPTCLIKMSEILG 696
            + +    T     ++N       E    +  L  LDLS+N LS K   +     +  L 
Sbjct: 323 KLKSLKRLTF----TSNKGGNAFSEVDLPS--LEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 697 VLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKS-LANCRNLVVLDLGNNKIRD 755
            L+L  N +  T+S  F G   L  LD   + L      S   + RNL+ LD+ +   R 
Sbjct: 377 YLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435

Query: 756 TFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNF 803
            F      +SSL VL +  NSF  N    +       L  +DL+    
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFL-PDIFTELRNLTFLDLSQCQL 482

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  153 bits (388), Expect = 3e-39
 Identities = 105/574 (18%), Positives = 172/574 (29%), Gaps = 96/574 (16%)

Query: 377 SKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAE 436
             +  +LDLS+N L   + S  +     L  +DL    +     G+  SL  L  L L  
Sbjct: 27  PFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 437 NKFGGLIPE-FSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLA 495
           N    L    FS  SS  L  +      L       I  L+ LK L ++ N +       
Sbjct: 86  NPIQSLALGAFSGLSS--LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 496 AIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLS 555
               L NL  L+LS N +                  +    LRV+  +       +LDLS
Sbjct: 144 YFSNLTNLEHLDLSSNKIQ----------------SIYCTDLRVLHQM--PLLNLSLDLS 185

Query: 556 DNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIP 615
            N ++  I         + L  L L +N  S       I  L+ + V  L   + +    
Sbjct: 186 LNPMN-FIQPGA--FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242

Query: 616 YPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDL 675
                  L  +  ++                                       +    L
Sbjct: 243 -------LEKFDKSALEG-------------------------------LCNLTIEEFRL 264

Query: 676 SKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPK 735
           +           L      +   +L   ++      ++  N G   L+L   + G     
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQFPTL 322

Query: 736 SLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQI 795
            L   ++L  L   +NK  + F     ++ SL  L L  N       C ++      L+ 
Sbjct: 323 KL---KSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377

Query: 796 VDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGL 855
           +DL+ N          + +    MS         + + F+   +                
Sbjct: 378 LDLSFNG---------VIT----MSSNFLGLEQLEHLDFQHSNLKQMSEFSVF------- 417

Query: 856 EMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPS-AIGNLQQL 914
                  L     +D S  +           L SL  L ++ N+            L+ L
Sbjct: 418 -----LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472

Query: 915 ESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNL 948
             LDLS   L    P    +L+ L  LN++ N L
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  148 bits (375), Expect = 2e-37
 Identities = 106/490 (21%), Positives = 175/490 (35%), Gaps = 73/490 (14%)

Query: 81  LDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSG-LGSLTNLTNLNLSNAGF 139
           LDLS   I   I++ +   SL +L +L L  N      +  G    L++L  L       
Sbjct: 57  LDLSRCEIQT-IEDGA-YQSLSHLSTLILTGNPI--QSLALGAFSGLSSLQKLVAVETNL 112

Query: 140 AGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPG 199
           A      +  +  L  L+++  N       +++  L     NL  L  L L    I +  
Sbjct: 113 ASLENFPIGHLKTLKELNVAH-N------LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165

Query: 200 IEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLAD-- 257
               + L  +      L LS   ++  I P   K   L  + L  N     V +      
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL 224

Query: 258 --------------------------FFNLTSLRLSHSRLNG--TFPEKILQV----HTL 285
                                        L +L +   RL     + + I+ +      +
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284

Query: 286 ETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLK-------------- 331
            +  L   ++ +  + DF  N   + L L N  F       + +LK              
Sbjct: 285 SSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS 342

Query: 332 -----NLSRLDLALC--YFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLD 384
                +L  LDL+     F G    S    T L YLDLSFN  +    +    + L HLD
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 402

Query: 385 LSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIP 444
             ++ L      + +  L NL+Y+D+ +     +  G    L  L+ L++A N F     
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

Query: 445 EFSNASSSALDTIDLSGNRLEGPIPMSIFD-LRNLKILILSSNKLNGTVQLAAIQRLHNL 503
                    L  +DLS  +LE  +  + F+ L +L++L ++SN+L  +V      RL +L
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSL 520

Query: 504 AKLELSYNNL 513
            K+ L  N  
Sbjct: 521 QKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  133 bits (336), Expect = 1e-32
 Identities = 90/518 (17%), Positives = 158/518 (30%), Gaps = 86/518 (16%)

Query: 456 TIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLT- 514
           T           IP ++    + K L LS N L   +   +      L  L+LS   +  
Sbjct: 11  TYQCMELNFYK-IPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 515 VNAGSDSSFPSQVRTLRLASCKLRVIPN--LKNQSKLFNLDLSDNQISGEIPNWVWEIGN 572
           +  G+  S    + TL L    ++ +        S L  L   +  ++      +     
Sbjct: 67  IEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG--HL 123

Query: 573 VSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQG-------NIPYPPPKAVLVD 625
            +L+ LN++HNL+ S + P   S+L+ +  LDL SN++Q         +   P   + +D
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183

Query: 626 YSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRA-KYLLVLDLSKNKLSG-- 682
            S N     I       +      +L NN  +  + +T  +    L V  L   +     
Sbjct: 184 LSLNPMNF-IQPGAFKEIRLH-KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241

Query: 683 ---KMPTCLIKMSEILGVLNLRGNSLSGTLSV---TFPGNCGLHTLDLNGNQLGGTVPKS 736
              K     ++    L +   R   L   L      F     + +  L    +       
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-- 299

Query: 737 LANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIV 796
            +       L+L N K        L++   L+ L   SN          +    P L+ +
Sbjct: 300 FSYNFGWQHLELVNCKFGQFPTLKLKS---LKRLTFTSN----KGGNAFSEVDLPSLEFL 352

Query: 797 DLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLE 856
           DL+ N                                                 + KG  
Sbjct: 353 DLSRNGL-----------------------------------------------SFKGCC 365

Query: 857 MELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTG-PIPSAIGNLQQLE 915
            +     +    +D S N     +      L+ L  L+   + L      S   +L+ L 
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424

Query: 916 SLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLVGKIP 953
            LD+S  H           L+ L  L ++ N+      
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  115 bits (290), Expect = 9e-27
 Identities = 71/367 (19%), Positives = 125/367 (34%), Gaps = 32/367 (8%)

Query: 81  LDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFA 140
           LDLS   ++     +   F    L  L L  N  +   + + +  L  L    L    F 
Sbjct: 182 LDLSLNPMNFIQPGA---FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 141 GQIPIQ---VSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISA 197
            +  ++    S +  L  L +       A L     ++  L   L  +    L    I  
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFR--LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296

Query: 198 -PGIEWCQALSSL---------VPKLQVLSLSSCYLSG---PIHPSLAKLQSLSVIRLDQ 244
                +      L          P L++ SL     +        S   L SL  + L +
Sbjct: 297 VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSR 356

Query: 245 NDL--LSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPD 302
           N L       +      +L  L LS + +  T     L +  LE LD   ++L    + +
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL--KQMSE 413

Query: 303 ---FPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPT-SLANLTQLV 358
              F    +L  L +S+T+           L +L  L +A   F  +        L  L 
Sbjct: 414 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473

Query: 359 YLDLSFNKFVG-PIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNG 417
           +LDLS  +       + +   +L  L+++ N L  ++    ++ L++L  + L  N  + 
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 532

Query: 418 SIPGSLF 424
           S P   +
Sbjct: 533 SCPRIDY 539

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.3 bits (118), Expect = 5e-06
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 3/82 (3%)

Query: 867 TSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSG 926
            +      NF   IP+ +    S   L+LS N L      +  +  +L+ LDLS   +  
Sbjct: 10  ITYQCMELNFYK-IPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 927 QIPIQLANLTFLSFLNLSHNNL 948
                  +L+ LS L L+ N +
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPI 88

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  194 bits (494), Expect = 2e-51
 Identities = 115/593 (19%), Positives = 217/593 (36%), Gaps = 65/593 (10%)

Query: 81  LDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSG-LGSLTNLTNLNLSNAGF 139
           L+L  +     ID  +   +L  L+ L+L  +      +       L +L  L L   G 
Sbjct: 53  LELGSQYTPLTIDKEA-FRNLPNLRILDLGSSKI--YFLHPDAFQGLFHLFELRLYFCGL 109

Query: 140 AGQI--PIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISA 197
           +  +        +  L  LDLS  N      ++ +  L      L  L+ +      I  
Sbjct: 110 SDAVLKDGYFRNLKALTRLDLSK-N------QIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162

Query: 198 PGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAK-LQSLSVIRLDQNDLLSPVPEFLA 256
                 + L      L   SL++  L   +     K +     + L+  D+         
Sbjct: 163 VCEHELEPLQG--KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG------- 213

Query: 257 DFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFP--KNSSLRTLML 314
           + + +       + ++ +    ++  H +       +++       F     SS+R L L
Sbjct: 214 NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDL 273

Query: 315 SNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVG-PIPS 373
           S+     +       LK+L  L+LA    +     +   L  L  L+LS+N        +
Sbjct: 274 SHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN 333

Query: 374 LHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQ 433
            +    + ++DL  N +   I    ++ L  L  +DLR N+L      ++  +P +  + 
Sbjct: 334 FYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIF 387

Query: 434 LAENKFGGLIPEFSNASSSALDTIDLSGNRLEG-PIPMSIFDLRNLKILILSSNKLNGTV 492
           L+ NK   L        +   + I LS NRLE   I   +  + +L+ILIL+ N+ +   
Sbjct: 388 LSGNKLVTLPKI-----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCS 442

Query: 493 QLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNL 552
                    +L +L L  N L +    ++     V                +  S L  L
Sbjct: 443 GDQTPSENPSLEQLFLGENMLQLA--WETELCWDV---------------FEGLSHLQVL 485

Query: 553 DLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQG 612
            L+ N ++  +P  V+     +L+ L+L+ N L+ L      ++L    +LD+  NQL  
Sbjct: 486 YLNHNYLN-SLPPGVFS-HLTALRGLSLNSNRLTVLSHNDLPANL---EILDISRNQLLA 540

Query: 613 NIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLC 665
             P       ++D ++N F            +F  + + +N +I G   +  C
Sbjct: 541 PNPDVFVSLSVLDITHNKFICEC-----ELSTFINWLNHTNVTIAGPPADIYC 588

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  177 bits (450), Expect = 9e-46
 Identities = 105/562 (18%), Positives = 196/562 (34%), Gaps = 75/562 (13%)

Query: 408 VDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGP 467
              R+ +L   +P  L      ++L L+ N     +   S      L  ++L        
Sbjct: 9   AFYRFCNLT-QVPQVL---NTTERLLLSFNYIRT-VTASSFPFLEQLQLLELGSQYTPLT 63

Query: 468 IPMSIF-DLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFP-- 524
           I    F +L NL+IL L S+K+   +   A Q L +L +L L +  L+     D  F   
Sbjct: 64  IDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122

Query: 525 SQVRTLRLASCKLRVIP---NLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLS 581
             +  L L+  ++R +    +    + L ++D S NQI     + +  +   +L + +L+
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182

Query: 582 HNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGN 641
            N L S         ++P   + L    +                S N +T  I      
Sbjct: 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDV----------------SGNGWTVDITG---- 222

Query: 642 FVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEI-LGVLNL 700
                      +N+I+     +L  A +++      + +          ++   +  L+L
Sbjct: 223 ---------NFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDL 273

Query: 701 RGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWW 760
               +    S  F     L  L+L  N++     ++     NL VL+L  N + + +   
Sbjct: 274 SHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN 333

Query: 761 LENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMS 820
              +  +  + L+ N     I   +      KLQ +DL  N          I        
Sbjct: 334 FYGLPKVAYIDLQKNHIA-IIQD-QTFKFLEKLQTLDLRDNAL------TTIHFI----- 380

Query: 821 DEDEAQSNFKDVHFEFLKIADFYYQD--AVTVTSKGLEMELVKILSIF------TSIDFS 872
                  +  D+     K+      +  A  +      +E + IL           +  +
Sbjct: 381 ------PSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILN 434

Query: 873 RNNFDGPIPEEI-GRLKSLHGLNLSQNALTGPIPSAI-----GNLQQLESLDLSMNHLSG 926
           +N F     ++      SL  L L +N L     + +       L  L+ L L+ N+L+ 
Sbjct: 435 QNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS 494

Query: 927 QIPIQLANLTFLSFLNLSHNNL 948
             P   ++LT L  L+L+ N L
Sbjct: 495 LPPGVFSHLTALRGLSLNSNRL 516

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  169 bits (430), Expect = 1e-44
 Identities = 83/528 (15%), Positives = 184/528 (34%), Gaps = 53/528 (10%)

Query: 260 NLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNF 319
            + SL LS +++       +     L+ L L  + +       F    SL  L LS+ + 
Sbjct: 27  AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86

Query: 320 SGVLPDSIGNLKNLSRLDLALCYFDG-SIPTSLANLTQLVYLDLSFNKFVGPIPSLHMS- 377
           S +     G L +L  L+L    +    + +   NLT L  L +   +    I  +  + 
Sbjct: 87  SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146

Query: 378 -KNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAE 436
             +L  L++   +L     S   + + ++ ++ L  +     +      L  ++ L+L +
Sbjct: 147 LTSLNELEIKALSL-RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205

Query: 437 NKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAA 496
                               +     R       S  +L  L   IL  +++        
Sbjct: 206 TNLAR-FQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE------- 257

Query: 497 IQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPN--LKNQSKLFNLDL 554
                     + + +   V +         +R L +    L    +       K+  + +
Sbjct: 258 FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317

Query: 555 SDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSL--QRPFSISDLSPITVLDLHSNQLQG 612
            ++++   +P    +    SL++L+LS NL+     +          +  L L  N L+ 
Sbjct: 318 ENSKVF-LVPCSFSQ-HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR- 374

Query: 613 NIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFT--LFFSLSNNSITGVIPETLCRAKYL 670
                                S+       ++        +S N+    +P++    + +
Sbjct: 375 ---------------------SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKM 412

Query: 671 LVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLG 730
             L+LS   +   + TC+ +    L VL++  N+L  + S+  P    L  L ++ N+L 
Sbjct: 413 RFLNLSSTGIR-VVKTCIPQT---LEVLDVSNNNLD-SFSLFLPR---LQELYISRNKL- 463

Query: 731 GTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFY 778
                  +    L+V+ +  N+++       + ++SL+ + L +N + 
Sbjct: 464 -KTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  167 bits (424), Expect = 8e-44
 Identities = 104/516 (20%), Positives = 178/516 (34%), Gaps = 41/516 (7%)

Query: 104 LQSLNLAFNMFNATEIPSG-LGSLTNLTNLNLSNAGFAGQIPIQV-SGMTRLVTLDLSSL 161
           ++SL+L+FN    T I  G L +  NL  L L ++     I       +  L  LDLS  
Sbjct: 28  MKSLDLSFNKI--TYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSD- 83

Query: 162 NRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSC 221
           N       L     S     L+ L+ L L G       +       +L   LQ L + + 
Sbjct: 84  NHLS---SLS----SSWFGPLSSLKYLNLMGNPYQT--LGVTSLFPNL-TNLQTLRIGNV 133

Query: 222 YLSGPIHP-SLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKIL 280
                I     A L SL+ + +    L +   + L    ++  L L  S           
Sbjct: 134 ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFAD 193

Query: 281 QVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLAL 340
            + ++  L+L   +L +      P +     +       S +  +S   L  L R  L L
Sbjct: 194 ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253

Query: 341 CYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWE 400
              +         L  L   + S +  V  +  +     +  L +    L     ST + 
Sbjct: 254 SEVE----FDDCTLNGLGDFNPSESDVVSELGKVETV-TIRRLHIPQFYL-FYDLSTVYS 307

Query: 401 HLSNLVYVDLRYNSLNGSIPGSLFS-LPMLQQLQLAENKFGGLIPEFSNASS--SALDTI 457
            L  +  + +  + +   +P S    L  L+ L L+EN       + S       +L T+
Sbjct: 308 LLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTL 366

Query: 458 DLSGNRLE--GPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTV 515
            LS N L         +  L+NL  L +S N         + Q    +  L LS   + V
Sbjct: 367 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF--HPMPDSCQWPEKMRFLNLSSTGIRV 424

Query: 516 NAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSL 575
                +  P  +  L +++  L          +L  L +S N++   +P+         L
Sbjct: 425 ---VKTCIPQTLEVLDVSNNNLDSFS--LFLPRLQELYISRNKLK-TLPDAS---LFPVL 475

Query: 576 QYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQ 611
             + +S N L S+        L+ +  + LH+N   
Sbjct: 476 LVMKISRNQLKSVP-DGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  158 bits (401), Expect = 6e-41
 Identities = 103/553 (18%), Positives = 195/553 (35%), Gaps = 71/553 (12%)

Query: 207 SSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRL 266
           S L   ++ L LS   ++   H  L    +L V+ L  + + +   +      +L  L L
Sbjct: 22  SGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81

Query: 267 SHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPD-FPKNSSLRTLMLSNTN-FSGVLP 324
           S + L+         + +L+ L+L GN      +   FP  ++L+TL + N   FS +  
Sbjct: 82  SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 141

Query: 325 DSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLD 384
                L +L+ L++           SL ++  + +L L  ++                  
Sbjct: 142 IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES----------------- 184

Query: 385 LSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIP 444
                    +     + LS++ Y++LR  +L       L    +   ++    + G ++ 
Sbjct: 185 -------AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR-GSVLT 236

Query: 445 EFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLA 504
           + S      L    L  + +         D     +   + ++ +   +L  ++ +  + 
Sbjct: 237 DESFNELLKLLRYILELSEV------EFDDCTLNGLGDFNPSESDVVSELGKVETV-TIR 289

Query: 505 KLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPN--LKNQSKLFNLDLSDNQISGE 562
           +L +    L  +  +  S   +V+ + + + K+ ++P    ++   L  LDLS+N +  E
Sbjct: 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEE 349

Query: 563 IPNWVWEIGN-VSLQYLNLSHNLLSSLQR-PFSISDLSPITVLDLHSNQLQGNIPYPPPK 620
                   G   SLQ L LS N L S+Q+    +  L  +T LD+  N            
Sbjct: 350 YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH--------- 400

Query: 621 AVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKL 680
                         +PD          F +LS+  I  V          L VLD+S N L
Sbjct: 401 -------------PMPDSCQWPEK-MRFLNLSSTGIRVVKTCIPQT---LEVLDVSNNNL 443

Query: 681 SGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANC 740
                  L +    L  L +  N L      +      L  + ++ NQL           
Sbjct: 444 D-SFSLFLPR----LQELYISRNKLKTLPDASLFPV--LLVMKISRNQLKSVPDGIFDRL 496

Query: 741 RNLVVLDLGNNKI 753
            +L  + L  N  
Sbjct: 497 TSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  147 bits (373), Expect = 3e-37
 Identities = 92/491 (18%), Positives = 172/491 (35%), Gaps = 62/491 (12%)

Query: 100 SLKYLQSLNLAFNMFNATEIPSG-LGSLTNLTNLNLSNAGFAG-QIPIQVSGMTRLVTLD 157
           SL  L+ L+L+ N    + + S   G L++L  LNL    +    +      +T L TL 
Sbjct: 72  SLGSLEHLDLSDNHL--SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129

Query: 158 LSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLS 217
           + ++  F    +            L  L EL +   ++     +  +++      +  L+
Sbjct: 130 IGNVETFSEIRR-------IDFAGLTSLNELEIKALSLRNYQSQSLKSI----RDIHHLT 178

Query: 218 LSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPE 277
           L     +  +      L S+  + L   +L       L      + ++    R +    E
Sbjct: 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238

Query: 278 KILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLD 337
              ++  L    L  + +      +F   +       + +    V          + RL 
Sbjct: 239 SFNELLKLLRYILELSEV------EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH 292

Query: 338 LALCYFDGSIPTSLANLTQLVYLDLSFNKFVG-PIPSLHMSKNLTHLDLSYNAL--PGAI 394
           +   Y    + T  + L ++  + +  +K    P       K+L  LDLS N +      
Sbjct: 293 IPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLK 352

Query: 395 SSTDWEHLSNLVYVDLRYNSLN--GSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSS 452
           +S       +L  + L  N L         L +L  L  L                    
Sbjct: 353 NSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL-------------------- 392

Query: 453 ALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNN 512
                D+S N    P+P S      ++ L LSS  +   V+         L  L++S NN
Sbjct: 393 -----DISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI---PQTLEVLDVSNNN 442

Query: 513 LTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGN 572
           L     S S F  +++ L ++  KL+ +P+      L  + +S NQ+   +P+ +++   
Sbjct: 443 LD----SFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLK-SVPDGIFD-RL 496

Query: 573 VSLQYLNLSHN 583
            SLQ + L  N
Sbjct: 497 TSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  146 bits (371), Expect = 5e-37
 Identities = 79/528 (14%), Positives = 174/528 (32%), Gaps = 62/528 (11%)

Query: 287 TLDLSGNSLLQGSLPDFPKN--SSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFD 344
             D    S         P    +++++L LS    + +    +    NL  L L     +
Sbjct: 9   VCDGRSRSFTS-----IPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN 63

Query: 345 GSIPTSLANLTQLVYLDLSFNKFVG-PIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLS 403
                +  +L  L +LDLS N              +L +L+L  N       ++ + +L+
Sbjct: 64  TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123

Query: 404 NLVYVDLRYNSLNGSIPGSLFS-LPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGN 462
           NL  + +        I    F+ L  L +L++            S  S   +  + L  +
Sbjct: 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN-YQSQSLKSIRDIHHLTLHLS 182

Query: 463 RLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSS 522
                + +    L +++ L L    L    Q + +      + ++      +V      +
Sbjct: 183 ESAFLLEIFADILSSVRYLELRDTNLA-RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241

Query: 523 FPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSH 582
              ++    L   ++       N   L + + S++ +  E+      +  V+++ L++  
Sbjct: 242 ELLKLLRYILELSEVEFDDCTLNG--LGDFNPSESDVVSELGK----VETVTIRRLHIPQ 295

Query: 583 NLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNF 642
             L         S L  +  + + ++++                        +P      
Sbjct: 296 FYLFYDL-STVYSLLEKVKRITVENSKVF----------------------LVPCSFSQH 332

Query: 643 VSFTLFFSLSNNSITGVIPET---LCRAKYLLVLDLSKNKLS--GKMPTCLIKMSEILGV 697
           +    F  LS N +     +          L  L LS+N L    K    L+ +   L  
Sbjct: 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN-LTS 391

Query: 698 LNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANC--RNLVVLDLGNNKIRD 755
           L++  N+    +  +      +  L+L+   +     + +  C  + L VLD+ NN +  
Sbjct: 392 LDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI-----RVVKTCIPQTLEVLDVSNNNLDS 445

Query: 756 TFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNF 803
                   +  L+ L +  N     +    +   +P L ++ ++ N  
Sbjct: 446 FS----LFLPRLQELYISRN----KLKTLPDASLFPVLLVMKISRNQL 485

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  131 bits (330), Expect = 6e-32
 Identities = 97/587 (16%), Positives = 171/587 (29%), Gaps = 104/587 (17%)

Query: 346 SIPTSLANLTQLVYLDLSFNKFVG-PIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSN 404
           SIP+ L     +  LDLSFNK        L    NL  L L  + +   I    +  L +
Sbjct: 19  SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI-NTIEGDAFYSLGS 75

Query: 405 LVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRL 464
           L ++DL  N L+         L  L+ L L  N +  L       + + L T+ +     
Sbjct: 76  LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 135

Query: 465 EGPIPMSIF-DLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSF 523
              I    F  L +L  L + +  L    Q  +++ + ++  L L  +         +  
Sbjct: 136 FSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADI 194

Query: 524 PSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHN 583
            S VR L L    L             +  +              ++        + S N
Sbjct: 195 LSSVRYLELRDTNLARFQFSPLPVDEVSSPMK-------------KLAFRGSVLTDESFN 241

Query: 584 LLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFV 643
            L  L R   I +LS +   D   N L                                 
Sbjct: 242 ELLKLLR--YILELSEVEFDDCTLNGLG-------------------------------- 267

Query: 644 SFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGN 703
                   + +    V          +  L + +  L   + T    + ++   + +  +
Sbjct: 268 ------DFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK-RITVENS 320

Query: 704 SLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKS---LANCRNLVVLDLGNNKIRD--TFP 758
            +             L  LDL+ N +     K+        +L  L L  N +R      
Sbjct: 321 KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTG 380

Query: 759 WWLENISSLRVLVLRSNSFYGNISCRENGDSWP-KLQIVDLASNNFGGRVPQKCITSWKA 817
             L  + +L  L +  N          +   WP K++ ++L+S                 
Sbjct: 381 EILLTLKNLTSLDISRN----TFHPMPDSCQWPEKMRFLNLSSTGI-------------- 422

Query: 818 MMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFD 877
                       K    + L++ D    +  + +           L     +  SRN   
Sbjct: 423 ---------RVVKTCIPQTLEVLDVSNNNLDSFSL---------FLPRLQELYISRNKLK 464

Query: 878 GPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHL 924
             +P+       L  + +S+N L          L  L+ + L  N  
Sbjct: 465 T-LPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  130 bits (329), Expect = 1e-31
 Identities = 103/558 (18%), Positives = 180/558 (32%), Gaps = 73/558 (13%)

Query: 408 VDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPE-FSNASSSALDTIDLSGNRLEG 466
            D R  S   SIP  L     ++ L L+ NK   +        ++  L  + L  +R+  
Sbjct: 10  CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACAN--LQVLILKSSRINT 64

Query: 467 PIPMSIFD-LRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFP- 524
            I    F  L +L+ L LS N L+ ++  +    L +L  L L  N      G  S FP 
Sbjct: 65  -IEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSLFPN 121

Query: 525 -SQVRTLRLASC-KLRVIPN--LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNL 580
            + ++TLR+ +      I        + L  L++    +       +  I +  + +L L
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD--IHHLTL 179

Query: 581 SHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAV----LVDYSNNSFTSSIP 636
             +  + L        LS +  L+L    L      P P       +   +      +  
Sbjct: 180 HLSESAFLL-EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238

Query: 637 DDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEI-L 695
                         LS            C    L   + S++ +     + L K+  + +
Sbjct: 239 SFNELLKLLRYILELSEVEFDD------CTLNGLGDFNPSESDVV----SELGKVETVTI 288

Query: 696 GVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRD 755
             L++    L   LS  +     +  + +  +++         + ++L  LDL  N + +
Sbjct: 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVE 348

Query: 756 TFPWW---LENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCI 812
            +           SL+ LVL  N         E   +   L  +D++ N F         
Sbjct: 349 EYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-------- 400

Query: 813 TSWKAMMSDEDEAQSNFKDVHF-EFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDF 871
                          + +      FL ++           S G+ +    I      +D 
Sbjct: 401 -----------PMPDSCQWPEKMRFLNLS-----------STGIRVVKTCIPQTLEVLDV 438

Query: 872 SRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQ 931
           S NN D         L  L  L +S+N L   +P A      L  + +S N L       
Sbjct: 439 SNNNLDS-FSL---FLPRLQELYISRNKLKT-LPDA-SLFPVLLVMKISRNQLKSVPDGI 492

Query: 932 LANLTFLSFLNLSHNNLV 949
              LT L  + L  N   
Sbjct: 493 FDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  116 bits (292), Expect = 4e-27
 Identities = 73/509 (14%), Positives = 142/509 (27%), Gaps = 99/509 (19%)

Query: 450 SSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELS 509
           S  A    D         IP  +     +K L LS NK+   +    ++   NL  L L 
Sbjct: 3   SCDASGVCDGRSRSFTS-IPSGLT--AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILK 58

Query: 510 YNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPN--LKNQSKLFNLDLSDNQISGEIPNWV 567
            + +    G        +  L L+   L  + +      S L  L+L  N     +    
Sbjct: 59  SSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ-TLGVTS 117

Query: 568 WEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYS 627
                 +LQ L + +    S  R    + L+ +  L++ +  L+             +Y 
Sbjct: 118 LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-------------NYQ 164

Query: 628 NNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTC 687
           + S          +        +L  +    ++         +  L+L    L+ +    
Sbjct: 165 SQSL--------KSIRDIH-HLTLHLSESAFLLEIFADILSSVRYLELRDTNLA-RFQFS 214

Query: 688 LIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLD 747
            + + E+   +       S     +F     L    L  +++         +C    + D
Sbjct: 215 PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV------EFDDCTLNGLGD 268

Query: 748 LGNNKIRDTFPWWLENISSLRVLVLRSNSFYGN-ISCRENG--DSWPKLQIVDLASNNFG 804
              ++        +  +  +  + +R        +    +       K++ + + ++   
Sbjct: 269 FNPSESD-----VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV- 322

Query: 805 GRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILS 864
                                                             +     + L 
Sbjct: 323 ------------------------------------------------FLVPCSFSQHLK 334

Query: 865 IFTSIDFSRNNF---DGPIPEEIGRLKSLHGLNLSQNALT--GPIPSAIGNLQQLESLDL 919
               +D S N             G   SL  L LSQN L         +  L+ L SLD+
Sbjct: 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDI 394

Query: 920 SMNHLSGQIPIQLANLTFLSFLNLSHNNL 948
           S N     +P        + FLNLS   +
Sbjct: 395 SRNTFH-PMPDSCQWPEKMRFLNLSSTGI 422

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  105 bits (263), Expect = 2e-23
 Identities = 64/370 (17%), Positives = 128/370 (34%), Gaps = 19/370 (5%)

Query: 598 SPITVLDLHSNQLQGNIPYP-PPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSI 656
               V D  S     +IP         +D S N  T     D+    +      L ++ I
Sbjct: 5   DASGVCDGRSRSFT-SIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQ-VLILKSSRI 62

Query: 657 TGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSG-TLSVTFPG 715
             +  +       L  LDLS N LS  + +        L  LNL GN      ++  FP 
Sbjct: 63  NTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121

Query: 716 NCGLHTLDLNGNQLGGTVPK-SLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRS 774
              L TL +   +    + +   A   +L  L++    +R+     L++I  +  L L  
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181

Query: 775 NSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHF 834
           +            D    ++ ++L   N         +  ++      DE  S  K + F
Sbjct: 182 SES--AFLLEIFADILSSVRYLELRDTN---------LARFQFSPLPVDEVSSPMKKLAF 230

Query: 835 EFLKIADFYYQDAVTVTSKGLEMELVKILSI-FTSIDFSRNNFDGPIPEEIG-RLKSLHG 892
               + D  + + + +    LE+  V+        +     +    + E       ++  
Sbjct: 231 RGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRR 290

Query: 893 LNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLVGKI 952
           L++ Q  L   + +    L++++ + +  + +         +L  L FL+LS N +V + 
Sbjct: 291 LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEY 350

Query: 953 PISTQLQSFL 962
             ++  +   
Sbjct: 351 LKNSACKGAW 360

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  161 bits (410), Expect = 9e-44
 Identities = 78/382 (20%), Positives = 152/382 (39%), Gaps = 52/382 (13%)

Query: 230 SLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLD 289
             A L       L +  +   V     +  ++T L ++  ++     + I  +  LE L+
Sbjct: 17  PDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV--ASIQGIEYLTNLEYLN 72

Query: 290 LSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPT 349
           L+GN +    +        L  L +     +     ++ NL NL  L L         P 
Sbjct: 73  LNGNQI--TDISPLSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISDISP- 127

Query: 350 SLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVD 409
            LANLT++  L+L  N  +  +  L     L +L ++ + +      T   +L++L  + 
Sbjct: 128 -LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKV---KDVTPIANLTDLYSLS 183

Query: 410 LRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIP 469
           L YN +    P  L SL  L       N+   + P  +N +   L+++ +  N++    P
Sbjct: 184 LNYNQIEDISP--LASLTSLHYFTAYVNQITDITP-VANMTR--LNSLKIGNNKITDLSP 238

Query: 470 MSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRT 529
             + +L  L  L + +N+++    + A++ L  L  L +  N ++               
Sbjct: 239 --LANLSQLTWLEIGTNQISD---INAVKDLTKLKMLNVGSNQIS--------------- 278

Query: 530 LRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQ 589
                     I  L N S+L +L L++NQ+  E    +   G  +L  L LS N ++ ++
Sbjct: 279 ---------DISVLNNLSQLNSLFLNNNQLGNEDMEVIG--GLTNLTTLFLSQNHITDIR 327

Query: 590 RPFSISDLSPITVLDLHSNQLQ 611
               ++ LS +   D  +  ++
Sbjct: 328 ---PLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  142 bits (361), Expect = 3e-37
 Identities = 74/407 (18%), Positives = 151/407 (37%), Gaps = 77/407 (18%)

Query: 349 TSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYV 408
              A+L + +   L        +    + +++T L ++   +    S    E+L+NL Y+
Sbjct: 16  FPDADLAEGIRAVLQKASVTDVVTQEEL-ESITKLVVAGEKVA---SIQGIEYLTNLEYL 71

Query: 409 DLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPI 468
           +L  N +    P  L +L  L  L +  NK    I    N ++  L  + L+ + +    
Sbjct: 72  NLNGNQITDISP--LSNLVKLTNLYIGTNKITD-ISALQNLTN--LRELYLNEDNISDIS 126

Query: 469 PMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVR 528
           P++  +L  +  L L +N       L+ +  +  L  L ++ + +               
Sbjct: 127 PLA--NLTKMYSLNLGANHN--LSDLSPLSNMTGLNYLTVTESKVKD------------- 169

Query: 529 TLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGN-VSLQYLNLSHNLLSS 587
                      +  + N + L++L L+ NQI    P     + +  SL Y     N ++ 
Sbjct: 170 -----------VTPIANLTDLYSLSLNYNQIEDISP-----LASLTSLHYFTAYVNQITD 213

Query: 588 LQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTL 647
           +     +++++ +  L + +N++    P                       + N    T 
Sbjct: 214 IT---PVANMTRLNSLKIGNNKITDLSP-----------------------LANLSQLT- 246

Query: 648 FFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSG 707
           +  +  N I+ +    +     L +L++  N++S    + L  +S+ L  L L  N L  
Sbjct: 247 WLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD--ISVLNNLSQ-LNSLFLNNNQLGN 301

Query: 708 TLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIR 754
                  G   L TL L+ N +  T  + LA+   +   D  N  I+
Sbjct: 302 EDMEVIGGLTNLTTLFLSQNHI--TDIRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  138 bits (350), Expect = 9e-36
 Identities = 78/411 (18%), Positives = 145/411 (35%), Gaps = 66/411 (16%)

Query: 104 LQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNR 163
             +L       N          L       L  A     +      +  +  L ++   +
Sbjct: 2   AATLATLPAPINQIF---PDADLAEGIRAVLQKASVTDVVTQ--EELESITKLVVAG-EK 55

Query: 164 FGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYL 223
                     ++ G ++ L  L  L L+G  I+         LS+L  KL  L + +  +
Sbjct: 56  VA--------SIQG-IEYLTNLEYLNLNGNQITDI-----SPLSNL-VKLTNLYIGTNKI 100

Query: 224 SGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVH 283
           +     +L  L +L  + L+++++       ++   NLT                     
Sbjct: 101 TDI--SALQNLTNLRELYLNEDNISD-----ISPLANLTK-------------------- 133

Query: 284 TLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYF 343
            + +L+L  N  L   L      + L  L ++ +    V P  I NL +L  L L     
Sbjct: 134 -MYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI 189

Query: 344 DGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLS 403
           +   P  LA+LT L Y     N+    I  +     L  L +  N +      +   +LS
Sbjct: 190 EDISP--LASLTSLHYFTAYVNQITD-ITPVANMTRLNSLKIGNNKI---TDLSPLANLS 243

Query: 404 NLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNR 463
            L ++++  N ++  I   +  L  L+ L +  N+    I   +N S   L+++ L+ N+
Sbjct: 244 QLTWLEIGTNQIS-DINA-VKDLTKLKMLNVGSNQISD-ISVLNNLSQ--LNSLFLNNNQ 298

Query: 464 LEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLT 514
           L       I  L NL  L LS N +     +  +  L  +   + +   + 
Sbjct: 299 LGNEDMEVIGGLTNLTTLFLSQNHITD---IRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  136 bits (345), Expect = 4e-35
 Identities = 80/381 (20%), Positives = 148/381 (38%), Gaps = 43/381 (11%)

Query: 87  SISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQ 146
           ++ A I+   P   L       L     + T++ +    L ++T L ++    A    I 
Sbjct: 7   TLPAPINQIFPDADLAEGIRAVLQKA--SVTDVVT-QEELESITKLVVAGEKVASIQGI- 62

Query: 147 VSGMTRLVTLDLSSLNRFGAPLKLENPNLSGL--LQNLAELRELYLDGANISAPGIEWCQ 204
              +T L  L+L+  N+           ++ +  L NL +L  LY+    I+        
Sbjct: 63  -EYLTNLEYLNLNG-NQ-----------ITDISPLSNLVKLTNLYIGTNKITDI-----S 104

Query: 205 ALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSL 264
           AL +L   L+ L L+   +S      LA L  +  + L  N  LS     L++   L  L
Sbjct: 105 ALQNL-TNLRELYLNEDNISDI--SPLANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYL 160

Query: 265 RLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLP 324
            ++ S++    P  I  +  L +L L+ N +    +      +SL          + +  
Sbjct: 161 TVTESKVKDVTP--IANLTDLYSLSLNYNQI--EDISPLASLTSLHYFTAYVNQITDI-- 214

Query: 325 DSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLD 384
             + N+  L+ L +         P  LANL+QL +L++  N+    I ++     L  L+
Sbjct: 215 TPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-INAVKDLTKLKMLN 271

Query: 385 LSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIP 444
           +  N +      +   +LS L  + L  N L       +  L  L  L L++N     I 
Sbjct: 272 VGSNQIS---DISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD-IR 327

Query: 445 EFSNASSSALDTIDLSGNRLE 465
             ++ S   +D+ D +   ++
Sbjct: 328 PLASLSK--MDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  118 bits (299), Expect = 4e-29
 Identities = 69/312 (22%), Positives = 123/312 (39%), Gaps = 39/312 (12%)

Query: 81  LDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFA 140
           L+L+   I+    + SPL +L  L +L +  N        S L +LTNL  L L+    +
Sbjct: 71  LNLNGNQIT----DISPLSNLVKLTNLYIGTNKI---TDISALQNLTNLRELYLNEDNIS 123

Query: 141 GQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGL--LQNLAELRELYLDGANISAP 198
              P+  + +T++ +L+L +           N NLS L  L N+  L  L +  + +   
Sbjct: 124 DISPL--ANLTKMYSLNLGA-----------NHNLSDLSPLSNMTGLNYLTVTESKVK-- 168

Query: 199 GIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADF 258
            +     +++L   L  LSL+   +       LA L SL       N +    P  +A+ 
Sbjct: 169 DVT---PIANL-TDLYSLSLNYNQIEDI--SPLASLTSLHYFTAYVNQITDITP--VANM 220

Query: 259 FNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTN 318
             L SL++ ++++    P  +  +  L  L++  N +    +      + L+ L + +  
Sbjct: 221 TRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQ 276

Query: 319 FSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSK 378
            S +    + NL  L+ L L            +  LT L  L LS N     I  L    
Sbjct: 277 ISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD-IRPLASLS 333

Query: 379 NLTHLDLSYNAL 390
            +   D +   +
Sbjct: 334 KMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  118 bits (299), Expect = 5e-29
 Identities = 78/421 (18%), Positives = 148/421 (35%), Gaps = 80/421 (19%)

Query: 529 TLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNV-SLQYLNLSHNLLSS 587
           TL      +  I    + ++     L    ++  +         + S+  L ++   ++S
Sbjct: 4   TLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVT-----QEELESITKLVVAGEKVAS 58

Query: 588 LQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTL 647
           +Q    I  L+ +  L+L+ NQ+    P                       + N V  T 
Sbjct: 59  IQ---GIEYLTNLEYLNLNGNQITDISP-----------------------LSNLVKLT- 91

Query: 648 FFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSG 707
              +  N IT      L     L  L L+++ +S    + L  +++ +  LNL  N    
Sbjct: 92  NLYIGTNKIT--DISALQNLTNLRELYLNEDNISD--ISPLANLTK-MYSLNLGANHNLS 146

Query: 708 TLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSL 767
            LS       GL+ L +  +++       +AN  +L  L L  N+I D  P  L +++SL
Sbjct: 147 DLS-PLSNMTGLNYLTVTESKV--KDVTPIANLTDLYSLSLNYNQIEDISP--LASLTSL 201

Query: 768 RVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQS 827
                  N     I+      +  +L  + + +N          ++    +        S
Sbjct: 202 HYFTAYVN----QITDITPVANMTRLNSLKIGNNKITD------LSPLANL--------S 243

Query: 828 NFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRL 887
               +     +I+D               +  VK L+    ++   N         +  L
Sbjct: 244 QLTWLEIGTNQISD---------------INAVKDLTKLKMLNVGSNQISDI--SVLNNL 286

Query: 888 KSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNN 947
             L+ L L+ N L       IG L  L +L LS NH++   P  LA+L+ +   + ++  
Sbjct: 287 SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQV 344

Query: 948 L 948
           +
Sbjct: 345 I 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  110 bits (277), Expect = 3e-26
 Identities = 70/381 (18%), Positives = 137/381 (35%), Gaps = 79/381 (20%)

Query: 429 LQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKL 488
              L         + P   +A  +      L    +   +     +L ++  L+++  K+
Sbjct: 2   AATLATLPAPINQIFP---DADLAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGEKV 56

Query: 489 NGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSK 548
                +  I+ L NL  L L+ N +T    S  S   ++  L + + K+  I  L+N + 
Sbjct: 57  A---SIQGIEYLTNLEYLNLNGNQITDI--SPLSNLVKLTNLYIGTNKITDISALQNLTN 111

Query: 549 LFNLDLSDNQISGEIPNWVWEIGN-VSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHS 607
           L  L L+++ IS   P     + N   +  LNL  N   S      +S+++ +  L +  
Sbjct: 112 LRELYLNEDNISDISP-----LANLTKMYSLNLGANHNLSD--LSPLSNMTGLNYLTVTE 164

Query: 608 NQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRA 667
           ++++   P                       I N        SL+ N I  + P  L   
Sbjct: 165 SKVKDVTP-----------------------IANLTDLY-SLSLNYNQIEDISP--LASL 198

Query: 668 KYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGN 727
             L       N+++         ++ +  +  L                    +L +  N
Sbjct: 199 TSLHYFTAYVNQITD--------ITPVANMTRLN-------------------SLKIGNN 231

Query: 728 QLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENG 787
           ++  T    LAN   L  L++G N+I D     +++++ L++L + SN     IS     
Sbjct: 232 KI--TDLSPLANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSN----QISDISVL 283

Query: 788 DSWPKLQIVDLASNNFGGRVP 808
           ++  +L  + L +N  G    
Sbjct: 284 NNLSQLNSLFLNNNQLGNEDM 304

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 78.0 bits (193), Expect = 2e-15
 Identities = 59/314 (18%), Positives = 115/314 (36%), Gaps = 51/314 (16%)

Query: 650 SLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTL 709
            L   S+T V+       + +  L ++  K++      +  ++  L  LNL GN ++   
Sbjct: 28  VLQKASVTDVVT--QEELESITKLVVAGEKVAS--IQGIEYLTN-LEYLNLNGNQITDIS 82

Query: 710 SVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRV 769
            ++      L  L +  N++  T   +L N  NL  L L  + I D  P  L N++ +  
Sbjct: 83  PLSNLVK--LTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP--LANLTKMYS 136

Query: 770 LVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNF 829
           L L +N    ++S      +   L  + +  +          +T    +        ++ 
Sbjct: 137 LNLGANHNLSDLS---PLSNMTGLNYLTVTESKVKD------VTPIANL--------TDL 179

Query: 830 KDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKS 889
             +   + +I D               +  +  L+         N      P  +  +  
Sbjct: 180 YSLSLNYNQIED---------------ISPLASLTSLHYFTAYVNQITDITP--VANMTR 222

Query: 890 LHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLV 949
           L+ L +  N +T   P  + NL QL  L++  N +S      + +LT L  LN+  N + 
Sbjct: 223 LNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQIS 278

Query: 950 GKIPIS--TQLQSF 961
               ++  +QL S 
Sbjct: 279 DISVLNNLSQLNSL 292

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 69.1 bits (170), Expect = 2e-12
 Identities = 41/245 (16%), Positives = 80/245 (32%), Gaps = 44/245 (17%)

Query: 718 GLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSF 777
           G  TL      +    P   A+    +   L    + D      E + S+  LV+     
Sbjct: 1   GAATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGE-- 54

Query: 778 YGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFL 837
              ++  +  +    L+ ++L  N      P   +                        L
Sbjct: 55  --KVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVK----------------------L 90

Query: 838 KIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQ 897
                       +++       ++ L+    +  + +N     P  +  L  ++ LNL  
Sbjct: 91  TNLYIGTNKITDISA-------LQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGA 141

Query: 898 NALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLVGKIPIS-- 955
           N       S + N+  L  L ++ + +    PI  ANLT L  L+L++N +    P++  
Sbjct: 142 NHNLS-DLSPLSNMTGLNYLTVTESKVKDVTPI--ANLTDLYSLSLNYNQIEDISPLASL 198

Query: 956 TQLQS 960
           T L  
Sbjct: 199 TSLHY 203

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 62.6 bits (153), Expect = 2e-10
 Identities = 41/256 (16%), Positives = 90/256 (35%), Gaps = 46/256 (17%)

Query: 719 LHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFY 778
                L    +  T   +     ++  L +   K+       +E +++L  L L  N   
Sbjct: 24  GIRAVLQKASV--TDVVTQEELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGN--- 76

Query: 779 GNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLK 838
             I+      +  KL  + + +N          I++ + +        +N ++++     
Sbjct: 77  -QITDISPLSNLVKLTNLYIGTNKI------TDISALQNL--------TNLRELYLNEDN 121

Query: 839 IADFYYQDAVTVTSKGLEM------ELVKILSIF------TSIDFSRNNFDGPIPEEIGR 886
           I+D      +T     +          +  LS          +  + +      P  I  
Sbjct: 122 ISDISPLANLT----KMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IAN 175

Query: 887 LKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHN 946
           L  L+ L+L+ N +    P  + +L  L      +N ++   P  +AN+T L+ L + +N
Sbjct: 176 LTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNN 231

Query: 947 NLVGKIPIS--TQLQS 960
            +    P++  +QL  
Sbjct: 232 KITDLSPLANLSQLTW 247

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.5 bits (145), Expect = 2e-09
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 867 TSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSG 926
           T ++   N         +  L  L  LN+  N ++    S + NL QL SL L+ N L  
Sbjct: 246 TWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGN 301

Query: 927 QIPIQLANLTFLSFLNLSHNNLVGKIPIS--TQLQSF 961
           +    +  LT L+ L LS N++    P++  +++ S 
Sbjct: 302 EDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSA 338

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  162 bits (412), Expect = 6e-43
 Identities = 111/547 (20%), Positives = 202/547 (36%), Gaps = 101/547 (18%)

Query: 92  IDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMT 151
           I+      +L       L     N T+  S    L  +T L     G             
Sbjct: 14  INQIFTDTALAEKMKTVLGKT--NVTDTVS-QTDLDQVTTLQADRLGIK----------- 59

Query: 152 RLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQALSSLVP 211
                                 ++ G ++ L  L ++      ++   I     L +L  
Sbjct: 60  ----------------------SIDG-VEYLNNLTQINFSNNQLT--DIT---PLKNL-T 90

Query: 212 KLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRL 271
           KL  + +++  ++      LA L +L+ + L  N +       +    NLT+        
Sbjct: 91  KLVDILMNNNQIADI--TPLANLTNLTGLTLFNNQITD-----IDPLKNLTN-------- 135

Query: 272 NGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLK 331
                        L  L+LS N++    +      +SL+ L   N   + + P  + NL 
Sbjct: 136 -------------LNRLELSSNTI--SDISALSGLTSLQQLSFGN-QVTDLKP--LANLT 177

Query: 332 NLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALP 391
            L RLD++      S  + LA LT L  L  + N+    I  L +  NL  L L+ N L 
Sbjct: 178 TLERLDISSNKV--SDISVLAKLTNLESLIATNNQISD-ITPLGILTNLDELSLNGNQL- 233

Query: 392 GAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASS 451
                     L+NL  +DL  N ++   P  L  L  L +L+L  N+   + P  +  ++
Sbjct: 234 --KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTA 288

Query: 452 SALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYN 511
             L  ++L+ N+LE   P  I +L+NL  L L  N ++    ++ +  L  L +L    N
Sbjct: 289 --LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD---ISPVSSLTKLQRLFFYNN 341

Query: 512 NLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIG 571
            ++    S  +  + +  L     ++  +  L N +++  L L+D   +    N+     
Sbjct: 342 KVS--DVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNY----- 394

Query: 572 NVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQ--GNIPYPPPKAVLVDYSNN 629
             ++   N   N+  +L  P +ISD    T  D+  N       + Y   + V +     
Sbjct: 395 KANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTT 454

Query: 630 SFTSSIP 636
           +F+ ++ 
Sbjct: 455 TFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  162 bits (412), Expect = 7e-43
 Identities = 102/529 (19%), Positives = 198/529 (37%), Gaps = 71/529 (13%)

Query: 284 TLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYF 343
            L +  ++ ++ +   +      +     +L  TN +  +     +L  ++ L       
Sbjct: 2   PLGSATITQDTPIN-QIFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI 58

Query: 344 DGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLS 403
                  +  L  L  ++ S N+    I  L     L  + ++ N +      T   +L+
Sbjct: 59  --KSIDGVEYLNNLTQINFSNNQLTD-ITPLKNLTKLVDILMNNNQI---ADITPLANLT 112

Query: 404 NLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNR 463
           NL  + L  N +    P  L +L  L +L+L+ N     I   S  +S  L  +    N+
Sbjct: 113 NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-ISALSGLTS--LQQLSFG-NQ 166

Query: 464 LEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSF 523
           +    P  + +L  L+ L +SSNK++    ++ + +L NL  L  + N ++    +    
Sbjct: 167 VTDLKP--LANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDI--TPLGI 219

Query: 524 PSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGN-VSLQYLNLSH 582
            + +  L L   +L+ I  L + + L +LDL++NQIS   P     +     L  L L  
Sbjct: 220 LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-----LSGLTKLTELKLGA 274

Query: 583 NLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNF 642
           N +S++     ++ L+ +T L+L+ NQL+   P                       I N 
Sbjct: 275 NQISNIS---PLAGLTALTNLELNENQLEDISP-----------------------ISNL 308

Query: 643 VSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRG 702
            + T + +L  N+I+ + P  +     L  L    NK+S    + L  ++  +  L+   
Sbjct: 309 KNLT-YLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTN-INWLSAGH 362

Query: 703 NSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLE 762
           N +S    +       +  L LN            AN      +      +    P  + 
Sbjct: 363 NQISDLTPLANLTR--ITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL--IAPATIS 418

Query: 763 NISSLRVLVLRSN--SFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQ 809
           +  S     +  N  S+   +S      ++ +   +   +  F G V Q
Sbjct: 419 DGGSYTEPDITWNLPSYTNEVSY-----TFSQPVTIGKGTTTFSGTVTQ 462

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  141 bits (358), Expect = 6e-36
 Identities = 99/438 (22%), Positives = 169/438 (38%), Gaps = 54/438 (12%)

Query: 81  LDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFA 140
           L      I     +   +  L  L  +N + N    T+I   L +LT L ++ ++N   A
Sbjct: 51  LQADRLGIK----SIDGVEYLNNLTQINFSNNQL--TDITP-LKNLTKLVDILMNNNQIA 103

Query: 141 GQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGL--LQNLAELRELYLDGANISAP 198
              P+  + +T L  L L + N+           ++ +  L+NL  L  L L    IS  
Sbjct: 104 DITPL--ANLTNLTGLTLFN-NQ-----------ITDIDPLKNLTNLNRLELSSNTISDI 149

Query: 199 GIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADF 258
                 ALS L   LQ LS  +          LA L +L  + +  N +       LA  
Sbjct: 150 -----SALSGL-TSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKVSD--ISVLAKL 198

Query: 259 FNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTN 318
            NL SL  ++++++   P  +  +  L+ L L+GN L    +      ++L  L L+N  
Sbjct: 199 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQ 254

Query: 319 FSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSK 378
            S + P  +  L  L+ L L         P  LA LT L  L+L+ N+    I  +   K
Sbjct: 255 ISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED-ISPISNLK 309

Query: 379 NLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENK 438
           NLT+L L +N +      +    L+ L  +    N ++     SL +L  +  L    N+
Sbjct: 310 NLTYLTLYFNNI---SDISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ 364

Query: 439 FGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQ 498
              L P  +N +   +  + L+                N+ I     N     +  A I 
Sbjct: 365 ISDLTP-LANLTR--ITQLGLNDQAWTNAPVNY---KANVSIPNTVKNVTGALIAPATIS 418

Query: 499 RLHNLAKLELSYNNLTVN 516
              +  + ++++N  +  
Sbjct: 419 DGGSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  124 bits (314), Expect = 3e-30
 Identities = 95/511 (18%), Positives = 174/511 (34%), Gaps = 111/511 (21%)

Query: 446 FSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAK 505
           F++ + +      L    +   +  +  DL  +  L      +     +  ++ L+NL +
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKS---IDGVEYLNNLTQ 72

Query: 506 LELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPN 565
           +  S N LT    +     +++  + + + ++  I  L N + L  L L +NQI+   P 
Sbjct: 73  INFSNNQLTDI--TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP- 129

Query: 566 WVWEIGN-VSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLV 624
               + N  +L  L LS N +S +    ++S L+ +  L    NQ+    P         
Sbjct: 130 ----LKNLTNLNRLELSSNTISDIS---ALSGLTSLQQLSF-GNQVTDLKP--------- 172

Query: 625 DYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKM 684
                         + N  +      +S+N ++      L +   L  L  + N++S   
Sbjct: 173 --------------LANLTTLE-RLDISSNKVSD--ISVLAKLTNLESLIATNNQISD-- 213

Query: 685 PTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLV 744
                    I  +  L                  L  L LNGNQL      +LA+  NL 
Sbjct: 214 ---------ITPLGILTN----------------LDELSLNGNQL--KDIGTLASLTNLT 246

Query: 745 VLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFG 804
            LDL NN+I +  P  L  ++ L  L L +N     IS          L  ++L  N   
Sbjct: 247 DLDLANNQISNLAP--LSGLTKLTELKLGAN----QISNISPLAGLTALTNLELNENQ-- 298

Query: 805 GRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILS 864
                  +     +         N   +   F  I+D                  V  L+
Sbjct: 299 -------LEDISPI-----SNLKNLTYLTLYFNNISDI---------------SPVSSLT 331

Query: 865 IFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHL 924
               + F  N         +  L +++ L+   N ++   P  + NL ++  L L+    
Sbjct: 332 KLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAW 387

Query: 925 SGQIPIQLANLTFLSFLNLSHNNLVGKIPIS 955
           +       AN++  + +      L+    IS
Sbjct: 388 TNAPVNYKANVSIPNTVKNVTGALIAPATIS 418

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  124 bits (313), Expect = 4e-30
 Identities = 99/554 (17%), Positives = 179/554 (32%), Gaps = 113/554 (20%)

Query: 400 EHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDL 459
             L+  +   L   ++  ++      L  +  LQ         I      ++  L  I+ 
Sbjct: 21  TALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-IDGVEYLNN--LTQINF 75

Query: 460 SGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGS 519
           S N+L    P  + +L  L  +++++N++     +  +  L NL  L L  N +T     
Sbjct: 76  SNNQLTDITP--LKNLTKLVDILMNNNQIAD---ITPLANLTNLTGLTLFNNQITD---- 126

Query: 520 DSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLN 579
                               I  LKN + L  L+LS N IS          G  SLQ L+
Sbjct: 127 --------------------IDPLKNLTNLNRLELSSNTISDISA----LSGLTSLQQLS 162

Query: 580 LSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDI 639
             + +         +++L+ +  LD+ SN++                       S    +
Sbjct: 163 FGNQVTD----LKPLANLTTLERLDISSNKV-----------------------SDISVL 195

Query: 640 GNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLN 699
               +       +NN I+ + P  L     L  L L+ N+L       L  ++  L  L+
Sbjct: 196 AKLTNLE-SLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTN-LTDLD 249

Query: 700 LRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPW 759
           L  N +S    ++      L  L L  NQ+  +    LA    L  L+L  N++ D  P 
Sbjct: 250 LANNQISNLAPLSGLTK--LTELKLGANQI--SNISPLAGLTALTNLELNENQLEDISP- 304

Query: 760 WLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMM 819
            + N+ +L  L L  N    NIS      S  KLQ +   +N          ++      
Sbjct: 305 -ISNLKNLTYLTLYFN----NISDISPVSSLTKLQRLFFYNNK---------VSDV---- 346

Query: 820 SDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGP 879
                  +N   +     +I+D                  +  L+  T +  +   +   
Sbjct: 347 -SSLANLTNINWLSAGHNQISDL---------------TPLANLTRITQLGLNDQAWTNA 390

Query: 880 IPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLS 939
                  +   + +     AL    P+ I +       D++ N  S          +   
Sbjct: 391 PVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLPS-YTNEVSYTFSQPV 447

Query: 940 FLNLSHNNLVGKIP 953
            +        G + 
Sbjct: 448 TIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  123 bits (312), Expect = 5e-30
 Identities = 92/497 (18%), Positives = 169/497 (34%), Gaps = 91/497 (18%)

Query: 481 LILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVI 540
            I     +N   Q+     L    K  L   N+T +  S +    QV TL+     ++ I
Sbjct: 7   TITQDTPIN---QIFTDTALAEKMKTVLGKTNVT-DTVSQTDL-DQVTTLQADRLGIKSI 61

Query: 541 PNLKNQSKLFNLDLSDNQISGEIPNWVWEIGN-VSLQYLNLSHNLLSSLQRPFSISDLSP 599
             ++  + L  ++ S+NQ++   P     + N   L  + +++N ++ +     +++L+ 
Sbjct: 62  DGVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIADIT---PLANLTN 113

Query: 600 ITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGV 659
           +T L L +NQ+                       +  D + N  +      LS+N+I+ +
Sbjct: 114 LTGLTLFNNQI-----------------------TDIDPLKNLTNLN-RLELSSNTISDI 149

Query: 660 IPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCG- 718
               L     L  L         K    L  +      L++  N +S    ++       
Sbjct: 150 SA--LSGLTSLQQLSFGNQVTDLKPLANLTTLER----LDISSNKVS---DISVLAKLTN 200

Query: 719 LHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFY 778
           L +L    NQ+  +    L    NL  L L  N+++D     L ++++L  L L +N   
Sbjct: 201 LESLIATNNQI--SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANN--- 253

Query: 779 GNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLK 838
             IS         KL  + L +N          I+    +        +   ++     +
Sbjct: 254 -QISNLAPLSGLTKLTELKLGANQISN------ISPLAGL--------TALTNLELNENQ 298

Query: 839 IADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQN 898
           + D                  +  L   T +    NN     P  +  L  L  L    N
Sbjct: 299 LEDI---------------SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNN 341

Query: 899 ALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLVGKIPISTQL 958
            ++    S++ NL  +  L    N +S   P+  ANLT ++ L L+              
Sbjct: 342 KVSDV--SSLANLTNINWLSAGHNQISDLTPL--ANLTRITQLGLNDQAWTNAPVNYKAN 397

Query: 959 QSFLATSFEGNKGLCGP 975
            S   T       L  P
Sbjct: 398 VSIPNTVKNVTGALIAP 414

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  152 bits (385), Expect = 2e-39
 Identities = 101/563 (17%), Positives = 173/563 (30%), Gaps = 125/563 (22%)

Query: 213 LQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLN 272
           LQ     S  L+  +      ++S +      ++     P    +   +   RL      
Sbjct: 13  LQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDR 71

Query: 273 GTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKN 332
                          L+L+   L   SLP+ P +  L +L+ S  + +  LP+   +LK+
Sbjct: 72  Q-----------AHELELNNLGL--SSLPELPPH--LESLVASCNSLT-ELPELPQSLKS 115

Query: 333 LSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPG 392
           L   +  L       P        L YL +S N+    +P L  S  L  +D+  N+L  
Sbjct: 116 LLVDNNNLKALSDLPP-------LLEYLGVSNNQLEK-LPELQNSSFLKIIDVDNNSLKK 167

Query: 393 AISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSS 452
                      +L ++    N L   +P  L +LP L  +    N    L     +    
Sbjct: 168 LPDL-----PPSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLKKLPDLPLS---- 216

Query: 453 ALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNN 512
            L++I    N LE      + +L  L  +   +N L     L       +L  L +  N 
Sbjct: 217 -LESIVAGNNILE--ELPELQNLPFLTTIYADNNLLKTLPDL-----PPSLEALNVRDNY 268

Query: 513 LTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGN 572
           LT         P  +  L ++      +  L     L+ L+ S N+I             
Sbjct: 269 LT----DLPELPQSLTFLDVSENIFSGLSEL--PPNLYYLNASSNEIRSLCDLPP----- 317

Query: 573 VSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFT 632
            SL+ LN+S+N L  L  P     L     L    N L                      
Sbjct: 318 -SLEELNVSNNKLIEL--PALPPRL---ERLIASFNHL---------------------- 349

Query: 633 SSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMS 692
           + +P+   N                            L  L +  N L  + P     + 
Sbjct: 350 AEVPELPQN----------------------------LKQLHVEYNPLR-EFPDIPESVE 380

Query: 693 EILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNK 752
           ++   +N     +             L  L +  N L    P       ++  L + + +
Sbjct: 381 DLR--MNSHLAEVPELPQ-------NLKQLHVETNPLR-EFPDIP---ESVEDLRMNSER 427

Query: 753 IRDTFPWWLENISSLRVLVLRSN 775
           + D + +  E    L   V   +
Sbjct: 428 VVDPYEFAHETTDKLEDDVFEHH 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  145 bits (367), Expect = 3e-37
 Identities = 91/499 (18%), Positives = 174/499 (34%), Gaps = 101/499 (20%)

Query: 306 NSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFN 365
           N+ L+  +  ++N +  +P    N+K+ +    A   ++ + P       ++    L   
Sbjct: 10  NTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68

Query: 366 KFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFS 425
                     + +    L+L+   L     S+  E   +L  +    NSL   +P    S
Sbjct: 69  ----------LDRQAHELELNNLGL-----SSLPELPPHLESLVASCNSLT-ELPELPQS 112

Query: 426 LPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSS 485
           L  L            L P         L+ + +S N+LE  +P  + +   LKI+ + +
Sbjct: 113 LKSLLVDNNNLKALSDLPPL--------LEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDN 162

Query: 486 NKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKN 545
           N L     L       +L  +    N L                          +P L+N
Sbjct: 163 NSLKKLPDL-----PPSLEFIAAGNNQLE------------------------ELPELQN 193

Query: 546 QSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDL 605
              L  +   +N +  ++P+      +  L+ +   +N+L  L     + +L  +T +  
Sbjct: 194 LPFLTAIYADNNSLK-KLPD---LPLS--LESIVAGNNILEELP---ELQNLPFLTTIYA 244

Query: 606 HSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLC 665
            +N L+  +P  PP    ++  +N  T  +P+   +     +      + ++ + P    
Sbjct: 245 DNNLLK-TLPDLPPSLEALNVRDNYLT-DLPELPQSLTFLDV-SENIFSGLSELPPN--- 298

Query: 666 RAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCG-LHTLDL 724
               L  L+ S N++       L  +   L  LN+  N L        P     L  L  
Sbjct: 299 ----LYYLNASSNEI-----RSLCDLPPSLEELNVSNNKLI-----ELPALPPRLERLIA 344

Query: 725 NGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCR 784
           + N L   VP+      NL  L +  N +R  FP   E++  LR+          N    
Sbjct: 345 SFNHL-AEVPELPQ---NLKQLHVEYNPLR-EFPDIPESVEDLRM----------NSHLA 389

Query: 785 ENGDSWPKLQIVDLASNNF 803
           E  +    L+ + + +N  
Sbjct: 390 EVPELPQNLKQLHVETNPL 408

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  140 bits (356), Expect = 1e-35
 Identities = 96/501 (19%), Positives = 180/501 (35%), Gaps = 68/501 (13%)

Query: 99  FSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDL 158
            S  +LQ      +  N TE+P    ++ + T    + + +    P        +    L
Sbjct: 8   VSNTFLQEPLRHSS--NLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 159 SS-LNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISA--PGIEWCQAL--------- 206
              L+R    L+L N  LS L +    L  L     +++      +  ++L         
Sbjct: 66  RDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKA 125

Query: 207 -SSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLR 265
            S L P L+ L +S+  L     P L     L +I +D N  L  +P+      +L  + 
Sbjct: 126 LSDLPPLLEYLGVSNNQLEKL--PELQNSSFLKIIDVDNNS-LKKLPDLPP---SLEFIA 179

Query: 266 LSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPD 325
             +++L    PE +  +  L  +    NSL    LPD P +  L +++  N         
Sbjct: 180 AGNNQLE-ELPE-LQNLPFLTAIYADNNSLK--KLPDLPLS--LESIVAGNNILE--ELP 231

Query: 326 SIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDL 385
            + NL  L+ +         ++P    +L  L   D           SL     L   + 
Sbjct: 232 ELQNLPFLTTIYADNNLL-KTLPDLPPSLEALNVRDNYLTDLPELPQSL---TFLDVSEN 287

Query: 386 SYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPE 445
            ++ L         E   NL Y++   N +  S+     S   L++L ++ NK   L   
Sbjct: 288 IFSGLS--------ELPPNLYYLNASSNEIR-SLCDLPPS---LEELNVSNNKLIELPAL 335

Query: 446 FSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAK 505
                   L+ +  S N L   +P      +NLK L +  N L    +   I    ++  
Sbjct: 336 PPR-----LERLIASFNHLAE-VPELP---QNLKQLHVEYNPLR---EFPDI--PESVED 381

Query: 506 LELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPN 565
           L ++ ++L          P  ++ L + +  LR  P++     + +L ++  ++  +   
Sbjct: 382 LRMN-SHLA----EVPELPQNLKQLHVETNPLREFPDIPES--VEDLRMNSERVV-DPYE 433

Query: 566 WVWEIGNVSLQYLNLSHNLLS 586
           +  E  +  L+     H+   
Sbjct: 434 FAHETTD-KLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  117 bits (294), Expect = 1e-27
 Identities = 83/537 (15%), Positives = 170/537 (31%), Gaps = 106/537 (19%)

Query: 402 LSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIP------------EFSNA 449
            + L       ++L   +P    ++    +   A +++    P               + 
Sbjct: 10  NTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68

Query: 450 SSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQL-AAIQRLHNLAKLEL 508
                  ++L+   L   +P       +L+ L+ S N L    +L    Q L +L     
Sbjct: 69  LDRQAHELELNNLGLS-SLPELPP---HLESLVASCNSLT---ELPELPQSLKSLLVDNN 121

Query: 509 SYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVW 568
           +   L       S  P  +  L +++ +L  +P L+N S L  +D+ +N +  ++P+   
Sbjct: 122 NLKAL-------SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLP- 172

Query: 569 EIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSN 628
                SL+++   +N L  L     + +L  +T +   +N L+  +P  P     +   N
Sbjct: 173 ----PSLEFIAAGNNQLEELP---ELQNLPFLTAIYADNNSLK-KLPDLPLSLESIVAGN 224

Query: 629 NSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCL 688
           N        ++ N    T      NN +   +P+     + L V D     L     +  
Sbjct: 225 NILEE--LPELQNLPFLT-TIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQSL- 279

Query: 689 IKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDL 748
                 L V     + LS       P N  L+ L+ + N++  ++        +L  L++
Sbjct: 280 ----TFLDVSENIFSGLS-----ELPPN--LYYLNASSNEI-RSLCDLP---PSLEELNV 324

Query: 749 GNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVP 808
            NNK+    P        L  L+   N         E  +    L+ + +  N       
Sbjct: 325 SNNKLI-ELP---ALPPRLERLIASFNHL------AEVPELPQNLKQLHVEYN------- 367

Query: 809 QKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTS 868
                                ++       + D      +         E+ ++      
Sbjct: 368 -------------------PLREFPDIPESVEDLRMNSHLA--------EVPELPQNLKQ 400

Query: 869 IDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLS 925
           +    N      P+    ++ L    ++   +  P   A     +LE      +H  
Sbjct: 401 LHVETNPLRE-FPDIPESVEDLR---MNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  104 bits (261), Expect = 1e-23
 Identities = 83/476 (17%), Positives = 146/476 (30%), Gaps = 93/476 (19%)

Query: 468 IPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQV 527
           I         L+  +  S+ L  T      + + +  +   +++    NA   +    ++
Sbjct: 3   INPRNVSNTFLQEPLRHSSNL--TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 528 RTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSS 587
              RL  C  R         +   L+L++  +S  +P       +  L+ L  S N L+ 
Sbjct: 61  AVSRLRDCLDR---------QAHELELNNLGLS-SLPE---LPPH--LESLVASCNSLTE 105

Query: 588 LQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTL 647
           L  P     L  + V + +   L       PP    +  SNN     +P+ + N      
Sbjct: 106 L--PELPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEK-LPE-LQNSSFLK- 156

Query: 648 FFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSG 707
              + NNS+   +P+       L  +    N+L  ++P  L  +   L  +    NSL  
Sbjct: 157 IIDVDNNSLK-KLPDLPPS---LEFIAAGNNQLE-ELPE-LQNLPF-LTAIYADNNSLK- 208

Query: 708 TLSVTFPGNCG-LHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISS 766
                 P     L ++    N L       L N   L  +   NN ++           S
Sbjct: 209 ----KLPDLPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLKTLPDL----PPS 258

Query: 767 LRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQ 826
           L  L +R N         E   S   L + +   +      P                  
Sbjct: 259 LEALNVRDNYL---TDLPELPQSLTFLDVSENIFSGLSELPP------------------ 297

Query: 827 SNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGR 886
            N   ++    +I                   L  +      ++ S N     +P    R
Sbjct: 298 -NLYYLNASSNEIR-----------------SLCDLPPSLEELNVSNNKLIE-LPALPPR 338

Query: 887 LKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLN 942
           L+ L     S N L   +P    NL+    L +  N L  + P    ++  L   +
Sbjct: 339 LERL---IASFNHLAE-VPELPQNLK---QLHVEYNPLR-EFPDIPESVEDLRMNS 386

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  102 bits (257), Expect = 4e-23
 Identities = 83/465 (17%), Positives = 141/465 (30%), Gaps = 123/465 (26%)

Query: 98  LFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLD 157
             SLK L   N        +++P        L  L +SN                     
Sbjct: 110 PQSLKSLLVDNNNLKAL--SDLPP------LLEYLGVSN-------------------NQ 142

Query: 158 LSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLS 217
           L  L                   N + L+ + +D  ++          L  L P L+ ++
Sbjct: 143 LEKLPELQ---------------NSSFLKIIDVDNNSLK--------KLPDLPPSLEFIA 179

Query: 218 LSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPE 277
             +  L     P L  L  L+ I  D N L                            P+
Sbjct: 180 AGNNQLEEL--PELQNLPFLTAIYADNNSLKK-------------------------LPD 212

Query: 278 KILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLD 337
             L    LE++    N L    LP+      L T+   N      LPD   +L+ L+  D
Sbjct: 213 LPLS---LESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRD 266

Query: 338 LALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISST 397
             L      +P    +LT L   +  F+     +  L    NL +L+ S N +       
Sbjct: 267 NYLT----DLPELPQSLTFLDVSENIFSG----LSEL--PPNLYYLNASSNEIRSLCDL- 315

Query: 398 DWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTI 457
                 +L  +++  N L   +P        L++L  + N    +     N     L  +
Sbjct: 316 ----PPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLAEVPELPQN-----LKQL 362

Query: 458 DLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNA 517
            +  N L    P     + +L++    ++ L         +   NL +L +  N L    
Sbjct: 363 HVEYNPLRE-FPDIPESVEDLRM----NSHLA-----EVPELPQNLKQLHVETNPLR--- 409

Query: 518 GSDSSFPSQVRTLRLASCKLRVIPNLKNQ--SKLFNLDLSDNQIS 560
                 P  V  LR+ S ++       ++   KL +     +   
Sbjct: 410 -EFPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 86.2 bits (214), Expect = 1e-17
 Identities = 77/411 (18%), Positives = 132/411 (32%), Gaps = 99/411 (24%)

Query: 569 EIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPY------------ 616
            + N  LQ      + L+ +  P    ++   T      ++ + N P             
Sbjct: 7   NVSNTFLQEPLRHSSNLTEM--PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSR 64

Query: 617 ----PPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLV 672
                  +A  ++ +N   +S +P+   +  S       S NS+T  +PE     K LLV
Sbjct: 65  LRDCLDRQAHELELNNLGLSS-LPELPPHLESL----VASCNSLT-ELPELPQSLKSLLV 118

Query: 673 LDLSKNKLSGKMPT---------CLIKMSEI-----LGVLNLRGNSLSGTLSVTFPGN-C 717
            + +   LS   P           L K+ E+     L ++++  NSL        P    
Sbjct: 119 DNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-----KLPDLPP 173

Query: 718 GLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSF 777
            L  +    NQL       L N   L  +   NN ++       +   SL  +V  +N  
Sbjct: 174 SLEFIAAGNNQL--EELPELQNLPFLTAIYADNNSLKKLP----DLPLSLESIVAGNN-- 225

Query: 778 YGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFL 837
              +       + P L  +   +N     +P                   + + ++    
Sbjct: 226 --ILEELPELQNLPFLTTIYADNNLLK-TLPDLP---------------PSLEALNVRDN 267

Query: 838 KIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQ 897
            +                  +L ++    T +D S N F G + E    L  L   N S 
Sbjct: 268 YL-----------------TDLPELPQSLTFLDVSENIFSG-LSELPPNLYYL---NASS 306

Query: 898 NALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNL 948
           N +     S       LE L++S N L  ++P     L     L  S N+L
Sbjct: 307 NEIR----SLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHL 349

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.4 bits (108), Expect = 8e-05
 Identities = 38/237 (16%), Positives = 67/237 (28%), Gaps = 52/237 (21%)

Query: 98  LFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLD 157
           L +L +L ++    N+     +P    SL  L   +         +P     +T L   +
Sbjct: 233 LQNLPFLTTIYADNNLL--KTLPDLPPSLEALNVRDNYLT----DLPELPQSLTFLDVSE 286

Query: 158 LSSLNRFGAP-----LKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQALSSLVPK 212
                    P     L   +  +  L      L EL +    +          L +L P+
Sbjct: 287 NIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE--------LPALPPR 338

Query: 213 LQVLSLSSCYLSGPIHPSLAKLQSLSV---------------IRLDQNDLLSPVPEFLA- 256
           L+ L  S  +L+  +      L+ L V                 L  N  L+ VPE    
Sbjct: 339 LERLIASFNHLAE-VPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQN 397

Query: 257 ----------------DFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQ 297
                              ++  LR++  R+   +         LE      +    
Sbjct: 398 LKQLHVETNPLREFPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHHH 454

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  149 bits (379), Expect = 2e-38
 Identities = 66/457 (14%), Positives = 129/457 (28%), Gaps = 66/457 (14%)

Query: 323 LPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIP-SLHMSKNLT 381
           + +   N        +       ++ +   +   +  LDLS N         L     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 382 HLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGG 441
            L+LS N L     + D E LS L  +DL  N +       L   P ++ L  A N    
Sbjct: 62  LLNLSSNVL---YETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNN--- 110

Query: 442 LIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLH 501
            I   S +       I L+ N++     +       ++ L L  N+++            
Sbjct: 111 -ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 502 NLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISG 561
            L  L L YN +                          +      +KL  LDLS N+++ 
Sbjct: 170 TLEHLNLQYNFIY------------------------DVKGQVVFAKLKTLDLSSNKLA- 204

Query: 562 EIPNWVWEIGN-VSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQ-GNIPYPPP 619
            +     E  +   + +++L +N L  +    ++     +   DL  N    G +     
Sbjct: 205 FMGP---EFQSAAGVTWISLRNNKLVLI--EKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259

Query: 620 KAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNK 679
           K   V          +        +              +      R   L+ L   ++ 
Sbjct: 260 KNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADR---LIALKRKEHA 316

Query: 680 LSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLAN 739
           L                 L+ +G+                  +D    Q    + +    
Sbjct: 317 L-----------------LSGQGSETERLECERENQA-RQREIDALKEQYRTVIDQVTLR 358

Query: 740 CRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNS 776
            +  + L+     + +         + L   + ++  
Sbjct: 359 KQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVG 395

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  139 bits (351), Expect = 6e-35
 Identities = 65/433 (15%), Positives = 128/433 (29%), Gaps = 47/433 (10%)

Query: 275 FPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLS 334
             E     +  +   ++ +SL Q          +++ L LS    S +    +     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 335 RLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAI 394
            L+L+           L +L+ L  LDL+ N     +  L +  ++  L  + N     I
Sbjct: 62  LLNLSSNVL--YETLDLESLSTLRTLDLNNNY----VQELLVGPSIETLHAANN----NI 111

Query: 395 SSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSAL 454
           S            + L  N +             +Q L L  N+   +      ASS  L
Sbjct: 112 SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 455 DTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLT 514
           + ++L  N +   +   +     LK L LSSNKL         Q    +  + L  N L 
Sbjct: 172 EHLNLQYNFIYD-VKGQVV-FAKLKTLDLSSNKL--AFMGPEFQSAAGVTWISLRNNKLV 227

Query: 515 VNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVS 574
                       +R                    L + DL  N           +  + +
Sbjct: 228 -------LIEKALRFS----------------QNLEHFDLRGNGFHCGTLR---DFFSKN 261

Query: 575 LQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSS 634
            +   ++   +  L    +  + +  T+    +   +        + + +    ++  S 
Sbjct: 262 QRVQTVAKQTVKKLTGQ-NEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSG 320

Query: 635 IPDDIGNFVSFTLFFS------LSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCL 688
              +           +              VI +   R +  + L+  K  L  ++    
Sbjct: 321 QGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGR 380

Query: 689 IKMSEILGVLNLR 701
              +E+ G L   
Sbjct: 381 RAHAELDGTLQQA 393

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  138 bits (350), Expect = 8e-35
 Identities = 74/462 (16%), Positives = 138/462 (29%), Gaps = 36/462 (7%)

Query: 206 LSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLR 265
           +     + ++  ++   L   +        ++  + L  N L       LA F  L  L 
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 266 LSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPD 325
           LS + L  T    +  + TL TLDL+ N      + +     S+ TL  +N N S V   
Sbjct: 65  LSSNVLYETLD--LESLSTLRTLDLNNN-----YVQELLVGPSIETLHAANNNISRV--- 114

Query: 326 SIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKF--VGPIPSLHMSKNLTHL 383
           S    +    + LA               +++ YLDL  N+   V        S  L HL
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 384 DLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLI 443
           +L YN +            + L  +DL  N L   +     S   +  + L  NK   + 
Sbjct: 175 NLQYNFI---YDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIE 230

Query: 444 PEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNL 503
                + +  L+  DL GN          F  +N ++  ++   +   +     +     
Sbjct: 231 KALRFSQN--LEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVK-KLTGQNEEECTVP 286

Query: 504 AKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLK---------NQSKLFNLDL 554
                            + F  ++  L+     L      +         NQ++   +D 
Sbjct: 287 TLGHYGAYCCED---LPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDA 343

Query: 555 SDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRP--FSISDLSPITVLDLHSNQLQG 612
              Q    + + V      +   L      L         + ++L       +   +LQ 
Sbjct: 344 LKEQYR-TVIDQVTL-RKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQH 401

Query: 613 NIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNN 654
                 P  +L           +        +   +    + 
Sbjct: 402 ATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHK 443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  133 bits (336), Expect = 5e-33
 Identities = 69/484 (14%), Positives = 154/484 (31%), Gaps = 28/484 (5%)

Query: 234 LQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGN 293
                + ++  + L   +       +N+  L LS + L+      +     LE L+LS N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 294 SLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLAN 353
            L      D    S+LRTL L+N          +    ++  L  A       +  S   
Sbjct: 69  VLY--ETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI-SRVSCS--R 118

Query: 354 LTQLVYLDLSFNKFVG-PIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRY 412
                 + L+ NK              + +LDL  N +     +        L +++L+Y
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 413 NSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSI 472
           N +   + G +     L+ L L+ NK   + PEF +A+   +  I L  N+L   I  ++
Sbjct: 179 NFIY-DVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAG--VTWISLRNNKLVL-IEKAL 233

Query: 473 FDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRL 532
              +NL+   L  N  +         +   +    ++   +    G +    +       
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV--QTVAKQTVKKLTGQNEEECTVPTLGHY 291

Query: 533 ASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEI-----GNVSLQYLNLSHNLLSS 587
            +     +P      +L  L   ++ +     +    +          + ++       +
Sbjct: 292 GAYCCEDLPAPFAD-RLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRT 350

Query: 588 LQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTS--SIPDDIGNFVSF 645
           +              L+     L   +         +D +         +          
Sbjct: 351 VIDQ-VTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPL 409

Query: 646 TLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSL 705
            L  ++        + +   +   +   D+ ++K + ++     ++ ++ G  +L   S 
Sbjct: 410 QLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET-QLAEENARLKKLNGEADLALASA 468

Query: 706 SGTL 709
           + TL
Sbjct: 469 NATL 472

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  126 bits (317), Expect = 2e-30
 Identities = 74/439 (16%), Positives = 137/439 (31%), Gaps = 41/439 (9%)

Query: 525 SQVRTLRLASCKLRVIPN--LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSH 582
           ++ +  ++    L+       ++   +  LDLS N +S      +       L+ LNLS 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLA--PFTKLELLNLSS 67

Query: 583 NLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNF 642
           N+L        +  LS +  LDL++N +Q  +    P    +  +NN+ +  +    G  
Sbjct: 68  NVLYETL---DLESLSTLRTLDLNNNYVQ-ELL-VGPSIETLHAANNNISR-VSCSRGQG 121

Query: 643 VSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRG 702
                   L+NN IT +          +  LDL  N++       L   S+ L  LNL+ 
Sbjct: 122 KKN---IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 703 NSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLE 762
           N +             L TLDL+ N+L   +     +   +  + L NNK+       L 
Sbjct: 179 NFIYDVKGQVVFAK--LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR 234

Query: 763 NISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDE 822
              +L    LR N       C    D + K Q V   +             + K +    
Sbjct: 235 FSQNLEHFDLRGN----GFHCGTLRDFFSKNQRVQTVAKQ-----------TVKKLTGQN 279

Query: 823 DEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPE 882
           +E  +     H+      D                 L+ +     ++   + +    +  
Sbjct: 280 EEECTVPTLGHYGAYCCEDL---------PAPFADRLIALKRKEHALLSGQGSETERLEC 330

Query: 883 EIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLN 942
           E         ++  +      I       Q   +L+     L  Q+         L    
Sbjct: 331 ERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTL 390

Query: 943 LSHNNLVGKIPISTQLQSF 961
                 +     + +    
Sbjct: 391 QQAVGQIELQHATEEQSPL 409

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  121 bits (305), Expect = 4e-29
 Identities = 62/443 (13%), Positives = 123/443 (27%), Gaps = 35/443 (7%)

Query: 124 GSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLA 183
            +        ++++     +         +  LDLS  N             +  L    
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSG-NPLSQI-------SAADLAPFT 58

Query: 184 ELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLD 243
           +L  L L    +          L SL   L+ L L++ Y+       L    S+  +   
Sbjct: 59  KLELLNLSSNVLYET-----LDLESL-STLRTLDLNNNYVQ-----ELLVGPSIETLHAA 107

Query: 244 QNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDF 303
            N  +S V    +      ++ L+++++             ++ LDL  N +   +  + 
Sbjct: 108 NN-NISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

Query: 304 PKN-SSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDL 362
             +  +L  L L       V          L  LDL+       +     +   + ++ L
Sbjct: 165 AASSDTLEHLNLQYNFIYDVKGQV--VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISL 221

Query: 363 SFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGS 422
             NK V    +L  S+NL H DL  N          +     +  V     ++      +
Sbjct: 222 RNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK--QTVKKLTGQN 279

Query: 423 LFSLPMLQQLQLAENKF----GGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNL 478
                +                                +   G+  E  +     +    
Sbjct: 280 EEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETER-LECERENQARQ 338

Query: 479 KILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLT-VNAGSDSSFPSQVRTLRLASCKL 537
           + +     +   TV      R      LE     L    +    +      TL+ A  ++
Sbjct: 339 REIDALKEQYR-TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI 397

Query: 538 RVIPNLKNQSKLFNLDLSDNQIS 560
            +    + QS L  L     +  
Sbjct: 398 ELQHATEEQSPLQLLRAIVKRYE 420

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  109 bits (275), Expect = 3e-25
 Identities = 70/507 (13%), Positives = 159/507 (31%), Gaps = 47/507 (9%)

Query: 81  LDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSG-LGSLTNLTNLNLSNAGF 139
             +++ S+   + +     S   ++ L+L+ N    ++I +  L   T L  LNLS+   
Sbjct: 15  EKVTDSSLKQALASL--RQSAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVL 70

Query: 140 AGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPG 199
              + +    ++ L TLDL++ N                L     +  L+    NIS   
Sbjct: 71  YETLDL--ESLSTLRTLDLNN-NYVQE------------LLVGPSIETLHAANNNISRVS 115

Query: 200 IEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLS-PVPEFLADF 258
               Q         + + L++  ++            +  + L  N++ +    E  A  
Sbjct: 116 CSRGQ-------GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 259 FNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTN 318
             L  L L ++ +     +  +    L+TLDLS N L     P+F   + +  + L N  
Sbjct: 169 DTLEHLNLQYNFI--YDVKGQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNK 225

Query: 319 FSGVLPDSIGNLKNLSRLDLALCYFD-GSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMS 377
              ++  ++   +NL   DL    F  G++    +   ++  +     K +        +
Sbjct: 226 LV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284

Query: 378 KNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLN-------GSIPGSLFSLPMLQ 430
              T                       L+ +  + ++L          +     +    +
Sbjct: 285 -VPTLGHYGAY----CCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQR 339

Query: 431 QLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNG 490
           ++   + ++   + +       A  T++     L+  +         L   +  +     
Sbjct: 340 EIDALKEQY-RTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIE 398

Query: 491 -TVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKL 549
                     L  L  +   Y  + V   S  +   +   +           N + +   
Sbjct: 399 LQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLN 458

Query: 550 FNLDLSDNQISGEIPNWVWEIGNVSLQ 576
              DL+    +  +   V    N++ Q
Sbjct: 459 GEADLALASANATLQELVVREQNLASQ 485

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 61.8 bits (150), Expect = 6e-10
 Identities = 19/103 (18%), Positives = 48/103 (46%), Gaps = 3/103 (2%)

Query: 858 ELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESL 917
           E+ +  + +     + ++    +        ++  L+LS N L+    + +    +LE L
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 918 DLSMNHLSGQIPIQLANLTFLSFLNLSHNNLVGKIPISTQLQS 960
           +LS N L     + L +L+ L  L+L++N +  ++ +   +++
Sbjct: 64  NLSSNVLYE--TLDLESLSTLRTLDLNNNYV-QELLVGPSIET 103

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 59.1 bits (143), Expect = 5e-09
 Identities = 21/76 (27%), Positives = 31/76 (40%)

Query: 880 IPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLS 939
           I E            ++ ++L   + S   +   ++ LDLS N LS      LA  T L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 940 FLNLSHNNLVGKIPIS 955
            LNLS N L   + + 
Sbjct: 62  LLNLSSNVLYETLDLE 77

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  133 bits (336), Expect = 3e-34
 Identities = 56/316 (17%), Positives = 104/316 (32%), Gaps = 22/316 (6%)

Query: 323 LPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVG-PIPSLHMSKNLT 381
           + +   N        +       ++ +   +   +  LDLS N         L     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 382 HLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGG 441
            L+LS N L     + D E LS L  +DL  N +       L   P ++ L  A N    
Sbjct: 62  LLNLSSNVL---YETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNN--- 110

Query: 442 LIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLH 501
            I   S +       I L+ N++     +       ++ L L  N+++            
Sbjct: 111 -ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 502 NLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIP-NLKNQSKLFNLDLSDNQIS 560
            L  L L YN +           ++++TL L+S KL  +    ++ + +  + L +N++ 
Sbjct: 170 TLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV 227

Query: 561 GEIPNWVWEIGN-VSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQ-LQGNIPYPP 618
             I      +    +L++ +L  N           S    +  +   + + L G      
Sbjct: 228 -LIEK---ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC 283

Query: 619 PKAVLVDYSNNSFTSS 634
               L  Y        
Sbjct: 284 TVPTLGHYGAYCCEDL 299

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  122 bits (309), Expect = 1e-30
 Identities = 57/342 (16%), Positives = 102/342 (29%), Gaps = 42/342 (12%)

Query: 276 PEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSR 335
            E     +  +   ++ +SL Q          +++ L LS    S +    +     L  
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 336 LDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAIS 395
           L+L+           L +L+ L  LDL+ N     +  L +  ++  L  + N     IS
Sbjct: 63  LNLSSNVL--YETLDLESLSTLRTLDLNNNY----VQELLVGPSIETLHAANN----NIS 112

Query: 396 STDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALD 455
                       + L  N +             +Q L L  N+   +      ASS  L+
Sbjct: 113 RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 456 TIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTV 515
            ++L  N +   +   +     LK L LSSNKL         Q    +  + L  N L  
Sbjct: 173 HLNLQYNFIYD-VKGQVV-FAKLKTLDLSSNKL--AFMGPEFQSAAGVTWISLRNNKLV- 227

Query: 516 NAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSL 575
                      +R                    L + DL  N          +       
Sbjct: 228 ------LIEKALRFS----------------QNLEHFDLRGNGFHCGTLRDFFSKNQ--- 262

Query: 576 QYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYP 617
           +   ++   +  L       +   +  L  +      ++P P
Sbjct: 263 RVQTVAKQTVKKL--TGQNEEECTVPTLGHYGAYCCEDLPAP 302

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  118 bits (297), Expect = 4e-29
 Identities = 65/331 (19%), Positives = 108/331 (32%), Gaps = 25/331 (7%)

Query: 206 LSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLR 265
           +     + ++  ++   L   +        ++  + L  N L       LA F  L  L 
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 266 LSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPD 325
           LS + L  T    +  + TL TLDL+ N      + +     S+ TL  +N N S V   
Sbjct: 65  LSSNVLYETLD--LESLSTLRTLDLNNN-----YVQELLVGPSIETLHAANNNISRV--- 114

Query: 326 SIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKF--VGPIPSLHMSKNLTHL 383
           S    +    + LA               +++ YLDL  N+   V        S  L HL
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 384 DLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLI 443
           +L YN +            + L  +DL  N L   +     S   +  + L  NK   + 
Sbjct: 175 NLQYNFI---YDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIE 230

Query: 444 PEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNL 503
                + +  L+  DL GN          F  +N ++  ++   +    +L         
Sbjct: 231 KALRFSQN--LEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVK---KLTGQNEEECT 284

Query: 504 AKLELSYNNLTVNAGSDSSFPSQVRTLRLAS 534
                 Y         D   P   R + L  
Sbjct: 285 VPTLGHYGAYCC---EDLPAPFADRLIALGH 312

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  114 bits (287), Expect = 7e-28
 Identities = 56/264 (21%), Positives = 96/264 (36%), Gaps = 17/264 (6%)

Query: 252 PEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRT 311
            E   +       +++ S L             ++ LDLSGN L Q S  D    + L  
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 312 LMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPI 371
           L LS+      L   + +L  L  LDL   Y        L     +  L  + N     +
Sbjct: 63  LNLSSNVLYETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR-V 114

Query: 372 PSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFS-LPMLQ 430
                 +   ++ L+ N +   +   D    S + Y+DL+ N ++      L +    L+
Sbjct: 115 SCSRG-QGKKNIYLANNKI-TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 431 QLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNG 490
            L L  N    +  +      + L T+DLS N+L   +         +  + L +NKL  
Sbjct: 173 HLNLQYNFIYDVKGQ---VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV- 227

Query: 491 TVQLAAIQRLHNLAKLELSYNNLT 514
            ++  A++   NL   +L  N   
Sbjct: 228 LIE-KALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  108 bits (272), Expect = 7e-26
 Identities = 62/309 (20%), Positives = 107/309 (34%), Gaps = 44/309 (14%)

Query: 497 IQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPN--LKNQSKLFNLDL 554
            Q  +     +++ ++L     S       V+ L L+   L  I    L   +KL  L+L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 555 SDNQISGEIPNWVWEIGN-VSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGN 613
           S N +  E      ++ +  +L+ L+L++N +  L           I  L   +N +   
Sbjct: 66  SSNVLY-ETL----DLESLSTLRTLDLNNNYVQELLV------GPSIETLHAANNNI--- 111

Query: 614 IPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVL 673
                              S +    G          L+NN IT +          +  L
Sbjct: 112 -------------------SRVSCSRGQGKKN---IYLANNKITMLRDLDEGCRSRVQYL 149

Query: 674 DLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTV 733
           DL  N++       L   S+ L  LNL+ N +             L TLDL+ N+L   +
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAK--LKTLDLSSNKL-AFM 206

Query: 734 PKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKL 793
                +   +  + L NNK+       L    +L    LR N F+   + R+      ++
Sbjct: 207 GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRV 264

Query: 794 QIVDLASNN 802
           Q V   +  
Sbjct: 265 QTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 98.9 bits (247), Expect = 2e-22
 Identities = 49/315 (15%), Positives = 98/315 (31%), Gaps = 26/315 (8%)

Query: 119 IPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGL 178
           I     +        ++++     +         +  LDLS  N      ++     +  
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSG-NPLS---QIS----AAD 53

Query: 179 LQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLS 238
           L    +L  L L    +          L SL   L+ L L++ Y+       L    S+ 
Sbjct: 54  LAPFTKLELLNLSSNVLYET-----LDLESL-STLRTLDLNNNYVQ-----ELLVGPSIE 102

Query: 239 VIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQG 298
            +    N  +S V    +      ++ L+++++             ++ LDL  N +   
Sbjct: 103 TLHAANN-NISRVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159

Query: 299 SLPDFPKN-SSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQL 357
           +  +   +  +L  L L        +   +     L  LDL+       +     +   +
Sbjct: 160 NFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGV 216

Query: 358 VYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNG 417
            ++ L  NK V    +L  S+NL H DL  N          +     +  V  +      
Sbjct: 217 TWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276

Query: 418 SIPGSLFSLPMLQQL 432
                  ++P L   
Sbjct: 277 GQNEEECTVPTLGHY 291

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 91.2 bits (227), Expect = 6e-20
 Identities = 57/338 (16%), Positives = 118/338 (34%), Gaps = 40/338 (11%)

Query: 81  LDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSG-LGSLTNLTNLNLSNAGF 139
             +++ S+   + +     S   ++ L+L+ N    ++I +  L   T L  LNLS+   
Sbjct: 15  EKVTDSSLKQALASL--RQSAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVL 70

Query: 140 AGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPG 199
              + +    ++ L TLDL++ N                L     +  L+    NIS   
Sbjct: 71  YETLDL--ESLSTLRTLDLNN-NYVQE------------LLVGPSIETLHAANNNISR-- 113

Query: 200 IEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLS-PVPEFLADF 258
           +       S     + + L++  ++            +  + L  N++ +    E  A  
Sbjct: 114 VS-----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 259 FNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTN 318
             L  L L ++ +      ++     L+TLDLS N L     P+F   + +  + L N  
Sbjct: 169 DTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNK 225

Query: 319 FSGVLPDSIGNLKNLSRLDLALCYFD-GSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMS 377
              ++  ++   +NL   DL    F  G++    +   ++  +     K +         
Sbjct: 226 LV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL-------TG 277

Query: 378 KNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSL 415
           +N     +      GA    D         + L ++  
Sbjct: 278 QNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 82.0 bits (203), Expect = 7e-17
 Identities = 52/255 (20%), Positives = 96/255 (37%), Gaps = 41/255 (16%)

Query: 695 LGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIR 754
             +  +  +SL   L+        +  LDL+GN L       LA    L +L+L +N + 
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71

Query: 755 DTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITS 814
           +T    LE++S+LR L L +N     +     G   P ++ +  A+NN            
Sbjct: 72  ETLD--LESLSTLRTLDLNNN----YVQELLVG---PSIETLHAANNNI----------- 111

Query: 815 WKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRN 874
                       S       +  K       + +T+     E    ++      +D   N
Sbjct: 112 ------------SRVSCSRGQGKKNIYLAN-NKITMLRDLDEGCRSRV----QYLDLKLN 154

Query: 875 NFDG-PIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLA 933
             D     E      +L  LNL  N +   +   +    +L++LDLS N L+  +  +  
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQV-VFAKLKTLDLSSNKLA-FMGPEFQ 211

Query: 934 NLTFLSFLNLSHNNL 948
           +   +++++L +N L
Sbjct: 212 SAAGVTWISLRNNKL 226

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 81.6 bits (202), Expect = 1e-16
 Identities = 48/289 (16%), Positives = 87/289 (30%), Gaps = 41/289 (14%)

Query: 660 IPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGL 719
           I E         +  ++ + L   + +        +  L+L GN LS   +        L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWN-VKELDLSGNPLSQISAADLAPFTKL 60

Query: 720 HTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYG 779
             L+L+ N L       L +   L  LDL NN +++     L    S+  L   +N+   
Sbjct: 61  ELLNLSSNVL--YETLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNI-S 112

Query: 780 NISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKI 839
            +S           + + LA+N     +                   S  + +  +  +I
Sbjct: 113 RVS----CSRGQGKKNIYLANNKIT-MLRDLDEGCR-----------SRVQYLDLKLNEI 156

Query: 840 ADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNA 899
               +             EL         ++   N     +  ++     L  L+LS N 
Sbjct: 157 DTVNFA------------ELAASSDTLEHLNLQYNFIYD-VKGQVV-FAKLKTLDLSSNK 202

Query: 900 LTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNL 948
           L   +     +   +  + L  N L   I   L     L   +L  N  
Sbjct: 203 LAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.9 bits (151), Expect = 3e-10
 Identities = 19/103 (18%), Positives = 48/103 (46%), Gaps = 3/103 (2%)

Query: 858 ELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESL 917
           E+ +  + +     + ++    +        ++  L+LS N L+    + +    +LE L
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 918 DLSMNHLSGQIPIQLANLTFLSFLNLSHNNLVGKIPISTQLQS 960
           +LS N L  +    L +L+ L  L+L++N +  ++ +   +++
Sbjct: 64  NLSSNVLY-ETL-DLESLSTLRTLDLNNNYV-QELLVGPSIET 103

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 55.4 bits (134), Expect = 4e-08
 Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 5/95 (5%)

Query: 867 TSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSG 926
            ++  + NN    +       +    + L+ N +T       G   +++ LDL +N +  
Sbjct: 102 ETLHAANNNISR-VSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158

Query: 927 -QIPIQLANLTFLSFLNLSHNNLVGKIPISTQLQS 960
                  A+   L  LNL +N +   +        
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAK 192

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.4 bits (116), Expect = 6e-06
 Identities = 40/240 (16%), Positives = 68/240 (28%), Gaps = 48/240 (20%)

Query: 81  LDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFA 140
           + L+   I+   D          +Q L+L  N  +         S   L +LNL      
Sbjct: 125 IYLANNKITMLRDLD--EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

Query: 141 GQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGI 200
             +  QV    +L TLDLSS N+           +    Q+ A +  + L    +     
Sbjct: 183 -DVKGQVV-FAKLKTLDLSS-NKL--------AFMGPEFQSAAGVTWISLRNNKLVL--- 228

Query: 201 EWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFN 260
                                     I  +L   Q+L    L  N            F  
Sbjct: 229 --------------------------IEKALRFSQNLEHFDLRGNGFHCGTLRDF--FSK 260

Query: 261 LTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFS 320
              ++    +       +  +  T+ TL   G    +    D P   + R + L + +  
Sbjct: 261 NQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE----DLPAPFADRLIALGHHHHH 316

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  134 bits (339), Expect = 2e-33
 Identities = 71/353 (20%), Positives = 138/353 (39%), Gaps = 40/353 (11%)

Query: 456 TIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLT- 514
            +     R    +P  I      ++L L  N++  T+         +L +LEL+ N ++ 
Sbjct: 15  AVLCHRKRFVA-VPEGIP--TETRLLDLGKNRI-KTLNQDEFASFPHLEELELNENIVSA 70

Query: 515 VNAGSDSSFPSQVRTLRLASCKLRVIPN--LKNQSKLFNLDLSDNQISGEIPNWVWEIGN 572
           V  G+ ++  + +RTL L S +L++IP       S L  LD+S+N+I   + +++++   
Sbjct: 71  VEPGAFNNLFN-LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQ-DL 127

Query: 573 VSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFT 632
            +L+ L +  N L  +    + S L+ +  L L    L                      
Sbjct: 128 YNLKSLEVGDNDLVYIS-HRAFSGLNSLEQLTLEKCNL---------------------- 164

Query: 633 SSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMS 692
           +SIP +  + +   +   L + +I  +   +  R   L VL++S       M    +   
Sbjct: 165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL 224

Query: 693 EILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNK 752
             L  L++   +L+    +       L  L+L+ N +       L     L  + L   +
Sbjct: 225 N-LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ 283

Query: 753 IRDTFPWWLENISSLRVLVLRSNSFYGNISCRENG--DSWPKLQIVDLASNNF 803
           +    P+    ++ LRVL +  N     ++  E     S   L+ + L SN  
Sbjct: 284 LAVVEPYAFRGLNYLRVLNVSGN----QLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  130 bits (329), Expect = 3e-32
 Identities = 64/320 (20%), Positives = 125/320 (39%), Gaps = 16/320 (5%)

Query: 248 LSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPD--FPK 305
              VPE +        L L  +R+     ++      LE L+L+ N +   ++    F  
Sbjct: 23  FVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV--SAVEPGAFNN 78

Query: 306 NSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFN 365
             +LRTL L +     +       L NL++LD++       +     +L  L  L++  N
Sbjct: 79  LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN 138

Query: 366 KFVG-PIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLF 424
             V     +     +L  L L    L  +I +    HL  L+ + LR+ ++N     S  
Sbjct: 139 DLVYISHRAFSGLNSLEQLTLEKCNL-TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFK 197

Query: 425 SLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIF-DLRNLKILIL 483
            L  L+ L+++   +   +        + L ++ ++   L   +P      L  L+ L L
Sbjct: 198 RLYRLKVLEISHWPYLDTMTPNCLYGLN-LTSLSITHCNLTA-VPYLAVRHLVYLRFLNL 255

Query: 484 SSNKLNGTVQLAAIQRLHNLAKLELSYNNLT-VNAGSDSSFPSQVRTLRLASCKLRVIPN 542
           S N ++ T++ + +  L  L +++L    L  V   +       +R L ++  +L  +  
Sbjct: 256 SYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY-LRVLNVSGNQLTTLEE 313

Query: 543 --LKNQSKLFNLDLSDNQIS 560
               +   L  L L  N ++
Sbjct: 314 SVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  130 bits (329), Expect = 4e-32
 Identities = 82/401 (20%), Positives = 141/401 (35%), Gaps = 88/401 (21%)

Query: 287 TLDLSGNSLLQGSLP-DFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDG 345
            +       +  ++P   P  +  R L L       +  D   +  +L  L+L       
Sbjct: 15  AVLCHRKRFV--AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA 70

Query: 346 SIPTSLANLTQLVYLDLSFNKFVG-PIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSN 404
             P +  NL  L  L L  N+    P+       NLT LD+S N +   +    ++ L N
Sbjct: 71  VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI-VILLDYMFQDLYN 129

Query: 405 LVYVDLRYNSLNGSIPGSLFS-LPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNR 463
           L  +++  N L   I    FS L  L+QL                          L    
Sbjct: 130 LKSLEVGDNDLV-YISHRAFSGLNSLEQL-------------------------TLEKCN 163

Query: 464 LEGPIPMSIF-DLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSS 522
           L   IP      L  L +L L    +N  ++  + +RL+ L  LE+S+         +  
Sbjct: 164 LTS-IPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL 221

Query: 523 FPSQVRTLRLASCKLRVIPN--LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNL 580
           +   + +L +  C L  +P   +++   L  L+LS N IS  I   +     + LQ + L
Sbjct: 222 YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLH-ELLRLQEIQL 279

Query: 581 SHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIG 640
               L+ ++ P++   L+ + VL++  NQL                      +++ + + 
Sbjct: 280 VGGQLAVVE-PYAFRGLNYLRVLNVSGNQL----------------------TTLEESV- 315

Query: 641 NFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLS 681
                  F S+ N                L  L L  N L+
Sbjct: 316 -------FHSVGN----------------LETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  125 bits (315), Expect = 3e-30
 Identities = 68/306 (22%), Positives = 128/306 (41%), Gaps = 15/306 (4%)

Query: 456 TIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTV 515
            +DL  NR++           +L+ L L+ N +   V+  A   L NL  L L  N L +
Sbjct: 36  LLDLGKNRIKTLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRSNRLKL 94

Query: 516 NAGSDSSFPSQVRTLRLASCKLRVIPN--LKNQSKLFNLDLSDNQISGEIPNWVWEIGNV 573
                 +  S +  L ++  K+ ++ +   ++   L +L++ DN +   I +  +  G  
Sbjct: 95  IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFS-GLN 152

Query: 574 SLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIP----YPPPKAVLVDYSNN 629
           SL+ L L    L+S+    ++S L  + VL L    +   I         +  +++ S+ 
Sbjct: 153 SLEQLTLEKCNLTSIP-TEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHW 210

Query: 630 SFTSSIPDDIGNFVSFTL-FFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCL 688
            +  ++  +        L   S+++ ++T V    +    YL  L+LS N +S    + L
Sbjct: 211 PYLDTMTPNC--LYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268

Query: 689 IKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDL 748
            ++   L  + L G  L+      F G   L  L+++GNQL         +  NL  L L
Sbjct: 269 HELLR-LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327

Query: 749 GNNKIR 754
            +N + 
Sbjct: 328 DSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  116 bits (293), Expect = 1e-27
 Identities = 65/320 (20%), Positives = 121/320 (37%), Gaps = 27/320 (8%)

Query: 104 LQSLNLAFNMFNATEIPSG-LGSLTNLTNLNLSNAGFAGQIPIQV-SGMTRLVTLDLSSL 161
            + L+L  N      +      S  +L  L L+    +  +     + +  L TL L S 
Sbjct: 34  TRLLDLGKN--RIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRS- 89

Query: 162 NRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSC 221
           NR      +      G+   L+ L +L +    I    +        L   L+ L +   
Sbjct: 90  NRLK---LIPL----GVFTGLSNLTKLDISENKIVI--LLD-YMFQDL-YNLKSLEVGDN 138

Query: 222 YLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQ 281
            L    H + + L SL  + L++ +L S   E L+    L  LRL H  +N        +
Sbjct: 139 DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKR 198

Query: 282 VHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALC 341
           ++ L+ L++S    L    P+     +L +L +++ N + V   ++ +L  L  L+L+  
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258

Query: 342 YFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMS-----KNLTHLDLSYNALPGAISS 396
                  + L  L +L  + L   +    +  +          L  L++S N L   +  
Sbjct: 259 PISTIEGSMLHELLRLQEIQLVGGQ----LAVVEPYAFRGLNYLRVLNVSGNQL-TTLEE 313

Query: 397 TDWEHLSNLVYVDLRYNSLN 416
           + +  + NL  + L  N L 
Sbjct: 314 SVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  101 bits (253), Expect = 1e-22
 Identities = 67/330 (20%), Positives = 115/330 (34%), Gaps = 42/330 (12%)

Query: 624 VDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGK 683
           V      F + +P+ I    + T    L  N I  +  +      +L  L+L++N +S  
Sbjct: 16  VLCHRKRFVA-VPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV 71

Query: 684 MPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNL 743
            P     +   L  L LR N L       F G   L  LD++ N++   +     +  NL
Sbjct: 72  EPGAFNNLFN-LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130

Query: 744 VVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENG--DSWPKLQIVDLASN 801
             L++G+N +          ++SL  L L       N++            L ++ L   
Sbjct: 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC----NLTSIPTEALSHLHGLIVLRLRHL 186

Query: 802 NFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEF---LKIADFYYQDAVTVTSKGLEME 858
           N                        +  +D  F+    LK+ +  +   +   +      
Sbjct: 187 NI-----------------------NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG 223

Query: 859 LVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLD 918
           L       TS+  +  N        +  L  L  LNLS N ++    S +  L +L+ + 
Sbjct: 224 LN-----LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQ 278

Query: 919 LSMNHLSGQIPIQLANLTFLSFLNLSHNNL 948
           L    L+   P     L +L  LN+S N L
Sbjct: 279 LVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 49.7 bits (119), Expect = 4e-06
 Identities = 41/234 (17%), Positives = 70/234 (29%), Gaps = 56/234 (23%)

Query: 716 NCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSN 775
           +     +  +  +    VP+ +       +LDLG N+I+        +   L  L L  N
Sbjct: 10  SAQDRAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN 66

Query: 776 SFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFE 835
                              +  +    F                        N + +   
Sbjct: 67  ------------------IVSAVEPGAFNN--------------------LFNLRTLGLR 88

Query: 836 FLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNL 895
             ++               + + +   LS  T +D S N     +      L +L  L +
Sbjct: 89  SNRLKL-------------IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135

Query: 896 SQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQ-LANLTFLSFLNLSHNNL 948
             N L      A   L  LE L L   +L+  IP + L++L  L  L L H N+
Sbjct: 136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNI 188

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 46.2 bits (110), Expect = 4e-05
 Identities = 20/83 (24%), Positives = 30/83 (36%)

Query: 867 TSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSG 926
             ++ + N      P     L +L  L L  N L          L  L  LD+S N +  
Sbjct: 59  EELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI 118

Query: 927 QIPIQLANLTFLSFLNLSHNNLV 949
            +     +L  L  L +  N+LV
Sbjct: 119 LLDYMFQDLYNLKSLEVGDNDLV 141

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  129 bits (326), Expect = 3e-32
 Identities = 72/410 (17%), Positives = 129/410 (31%), Gaps = 71/410 (17%)

Query: 274 TFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNL 333
                +        + +   +       +    ++ + +   N+    +    + + + +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 334 SRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVG-PIPSLHMSKNLTHLDLSYNALPG 392
             L+L     +     + A    +  L + FN     P         LT L L  N L  
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-S 130

Query: 393 AISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFS-LPMLQQLQLAENKFGGLIPEFSNASS 451
           ++    + +   L  + +  N+L   I    F     LQ LQL+ N+    +     +  
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNR----LTHVDLSLI 185

Query: 452 SALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYN 511
            +L   ++S N L      ++     ++ L  S N +N  V+         L  L+L +N
Sbjct: 186 PSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHN 236

Query: 512 NLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIG 571
           NLT                            L N   L  +DLS N++  +I    +   
Sbjct: 237 NLT------------------------DTAWLLNYPGLVEVDLSYNELE-KIMYHPFV-K 270

Query: 572 NVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSF 631
              L+ L +S+N L +L        +  + VLDL  N L                     
Sbjct: 271 MQRLERLYISNNRLVALNLYG--QPIPTLKVLDLSHNHL--------------------- 307

Query: 632 TSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLS 681
              +  +   F        L +NSI  +   T      L  L LS N   
Sbjct: 308 -LHVERNQPQFDRLE-NLYLDHNSIVTLKLSTH---HTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  128 bits (323), Expect = 5e-32
 Identities = 68/406 (16%), Positives = 135/406 (33%), Gaps = 50/406 (12%)

Query: 323 LPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVG-PIPSLHMSKNLT 381
           +  ++        + + +   D         L     +    +     P   L   + + 
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 382 HLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFS-LPMLQQLQLAENKFG 440
            L+L+   +   I +  + +   +  + + +N++   +P  +F  +P+L  L L  N   
Sbjct: 73  LLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS 130

Query: 441 GLIPEFSNASSSALDTIDLSGNRLEGPIPMSIF-DLRNLKILILSSNKLNGTVQLAAIQR 499
             +P     ++  L T+ +S N LE  I    F    +L+ L LSSN+L   V L+    
Sbjct: 131 -SLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLT-HVDLSL--- 184

Query: 500 LHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQI 559
           + +L    +SYN L+       + P  V  L  +   + V+    N   L  L L  N +
Sbjct: 185 IPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVE-LTILKLQHNNL 238

Query: 560 SGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPP 619
           + +     W +    L  ++LS+N L  +        +  +  L + +N+L         
Sbjct: 239 T-DTA---WLLNYPGLVEVDLSYNELEKIM-YHPFVKMQRLERLYISNNRL--------- 284

Query: 620 KAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNK 679
                         ++        +      LS+N +   +     +   L  L L  N 
Sbjct: 285 -------------VALNLYGQPIPTLK-VLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 329

Query: 680 LSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLN 725
           +     +    +      L L  N            N     +D  
Sbjct: 330 IVTLKLSTHHTLKN----LTLSHNDWDCNSLRALFRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  126 bits (318), Expect = 2e-31
 Identities = 75/428 (17%), Positives = 132/428 (30%), Gaps = 73/428 (17%)

Query: 346 SIPTSLANLTQLVYLDLSFNKFVGPIPSLHMS-KNLTHLDLSYNALPGAISSTDWEHLSN 404
            I ++L        + +             ++  N   +    + +   + +   +    
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQ 70

Query: 405 LVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRL 464
           +  ++L    +      +      +Q+L +  N    L P     +   L  + L  N L
Sbjct: 71  VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDL 129

Query: 465 EGPIPMSIF-DLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSF 523
              +P  IF +   L  L +S+N L   ++    Q   +L  L+LS N LT     D S 
Sbjct: 130 SS-LPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH---VDLSL 184

Query: 524 PSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHN 583
              +    ++   L  +        +  LD S N I+  +   V    NV L  L L HN
Sbjct: 185 IPSLFHANVSYNLLSTLAIPIA---VEELDASHNSIN-VVRGPV----NVELTILKLQHN 236

Query: 584 LLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFV 643
            L+       + +   +  +DL  N+L                        I       +
Sbjct: 237 NLTDTA---WLLNYPGLVEVDLSYNEL----------------------EKIMYHPFVKM 271

Query: 644 SFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGN 703
                  +SNN +   +         L VLDLS N L                       
Sbjct: 272 QRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL---------------------- 308

Query: 704 SLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIR-DTFPWWLE 762
                +    P    L  L L+ N +  T+   L+    L  L L +N    ++      
Sbjct: 309 ----HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRALFR 361

Query: 763 NISSLRVL 770
           N++   V 
Sbjct: 362 NVARPAVD 369

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  124 bits (313), Expect = 1e-30
 Identities = 73/353 (20%), Positives = 127/353 (35%), Gaps = 28/353 (7%)

Query: 213 LQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLN 272
              + +               L +  ++    + +       L  F  +  L L+  ++ 
Sbjct: 23  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 82

Query: 273 GTFPEKILQVHTLETLDLSGNSLLQGSLPD--FPKNSSLRTLMLSNTNFSGVLPDSIGNL 330
                     HT++ L +  N++    LP   F     L  L+L   + S +      N 
Sbjct: 83  EIDTYAFAYAHTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT 140

Query: 331 KNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMS--KNLTHLDLSYN 388
             L+ L ++    +     +    T L  L LS N+    +  + +S   +L H ++SYN
Sbjct: 141 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR----LTHVDLSLIPSLFHANVSYN 196

Query: 389 ALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSN 448
            L      +       +  +D  +NS+N  + G +     L  L+L  N          N
Sbjct: 197 LL------STLAIPIAVEELDASHNSIN-VVRGPVNV--ELTILKLQHNNLTD-TAWLLN 246

Query: 449 ASSSALDTIDLSGNRLEGPIPMSIFD-LRNLKILILSSNKLNGTVQLAAIQRLHNLAKLE 507
                L  +DLS N LE  I    F  ++ L+ L +S+N+L         Q +  L  L+
Sbjct: 247 YPG--LVEVDLSYNELEK-IMYHPFVKMQRLERLYISNNRL--VALNLYGQPIPTLKVLD 301

Query: 508 LSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQIS 560
           LS+N+L     +   F   +  L L    +  +  L     L NL LS N   
Sbjct: 302 LSHNHLLHVERNQPQFDR-LENLYLDHNSIVTLK-LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  122 bits (309), Expect = 4e-30
 Identities = 71/389 (18%), Positives = 133/389 (34%), Gaps = 52/389 (13%)

Query: 418 SIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFD-LR 476
            I  +L    +   + +       +   F + + +    +    + +   +P ++ D  R
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQD-VYFGFEDITLNNQKIVTFKNSTMRK-LPAALLDSFR 69

Query: 477 NLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCK 536
            +++L L+  ++   +   A    H + KL + +N +             +  L L    
Sbjct: 70  QVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 128

Query: 537 LRVIPN--LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSI 594
           L  +P     N  KL  L +S+N +   I +  ++    SLQ L LS N L+ +     +
Sbjct: 129 LSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQ-ATTSLQNLQLSSNRLTHV----DL 182

Query: 595 SDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNN 654
           S +  +   ++  N L                      S++   I            S+N
Sbjct: 183 SLIPSLFHANVSYNLL----------------------STLAIPI-----AVEELDASHN 215

Query: 655 SITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFP 714
           SI  V          L +L L  N L+      L+     L  ++L  N L   +   F 
Sbjct: 216 SINVVRGPVNVE---LTILKLQHNNLTD--TAWLLNYPG-LVEVDLSYNELEKIMYHPFV 269

Query: 715 GNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRS 774
               L  L ++ N+L   +         L VLDL +N +             L  L L  
Sbjct: 270 KMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDH 327

Query: 775 NSFYGNISCRENGDSWPKLQIVDLASNNF 803
           NS    +       +   L+ + L+ N++
Sbjct: 328 NSI-VTLK----LSTHHTLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  122 bits (307), Expect = 8e-30
 Identities = 82/420 (19%), Positives = 146/420 (34%), Gaps = 70/420 (16%)

Query: 119 IPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGL 178
           I S L       ++++           +   +     +   + +      KL     + L
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKN-STMR---KLP----AAL 64

Query: 179 LQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHP-SLAKLQSL 237
           L +  ++  L L+   I                               I   + A   ++
Sbjct: 65  LDSFRQVELLNLNDLQIEE-----------------------------IDTYAFAYAHTI 95

Query: 238 SVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQ-VHTLETLDLSGNSLL 296
             + +  N +    P    +   LT L L  + L+ + P  I      L TL +S N+L 
Sbjct: 96  QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNL- 153

Query: 297 QGSLPD--FPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANL 354
              + D  F   +SL+ L LS+   + V    +  + +L   +++         ++LA  
Sbjct: 154 -ERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL-----STLAIP 204

Query: 355 TQLVYLDLSFNKFVGPIPSLHMS--KNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRY 412
             +  LD S N     I  +       LT L L +N L     +    +   LV VDL Y
Sbjct: 205 IAVEELDASHNS----INVVRGPVNVELTILKLQHNNL---TDTAWLLNYPGLVEVDLSY 257

Query: 413 NSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSI 472
           N L   +      +  L++L ++ N+   L        +  L  +DLS N L   +  + 
Sbjct: 258 NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT--LKVLDLSHNHLLH-VERNQ 314

Query: 473 FDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRL 532
                L+ L L  N +  T++L+     H L  L LS+N+   N  S  +    V    +
Sbjct: 315 PQFDRLENLYLDHNSIV-TLKLST---HHTLKNLTLSHNDWDCN--SLRALFRNVARPAV 368

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  115 bits (291), Expect = 8e-28
 Identities = 68/411 (16%), Positives = 135/411 (32%), Gaps = 62/411 (15%)

Query: 81  LDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSG-LGSLTNLTNLNLSNAGF 139
            D+  +  +  +       +L   + +    +     ++P+  L S   +  LNL++   
Sbjct: 24  YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLND--- 78

Query: 140 AGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPG 199
                           L +  ++                      +++LY+    I    
Sbjct: 79  ----------------LQIEEIDT-------------YAFAYAHTIQKLYMGFNAIRY-- 107

Query: 200 IEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFF 259
           +       ++ P L VL L    LS            L+ + +  N+L     +      
Sbjct: 108 LPP-HVFQNV-PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 165

Query: 260 NLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNF 319
           +L +L+LS +RL       ++   +L   ++S N      L       ++  L  S+ + 
Sbjct: 166 SLQNLQLSSNRLT-HVDLSLIP--SLFHANVSYN-----LLSTLAIPIAVEELDASHNSI 217

Query: 320 SGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVG-PIPSLHMSK 378
           + V          L+ L L       +    L N   LV +DLS+N+            +
Sbjct: 218 NVVRGPV---NVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 272

Query: 379 NLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENK 438
            L  L +S N L     +   + +  L  +DL +N L   +  +      L+ L L  N 
Sbjct: 273 RLERLYISNNRL--VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 329

Query: 439 FGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLN 489
               I     ++   L  + LS N  +     ++F  RN+    +     +
Sbjct: 330 ----IVTLKLSTHHTLKNLTLSHNDWDCNSLRALF--RNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 95.5 bits (238), Expect = 6e-21
 Identities = 62/362 (17%), Positives = 114/362 (31%), Gaps = 50/362 (13%)

Query: 600 ITVLDLHSNQLQGNIPYPPPKAVL-----VDYSNNSFTSSIPDDIGNFVSFTLFFSLSNN 654
               D+H +    ++ +      L     V + N++    +P  + +        +L++ 
Sbjct: 21  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDL 79

Query: 655 SITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFP 714
            I  +       A  +  L +  N +    P     +   L VL L  N LS      F 
Sbjct: 80  QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL-LTVLVLERNDLSSLPRGIFH 138

Query: 715 GNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRS 774
               L TL ++ N L      +     +L  L L +N++       L  I SL    +  
Sbjct: 139 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSY 195

Query: 775 NSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHF 834
           N                 ++ +D + N+         I                   +  
Sbjct: 196 NLL-------STLAIPIAVEELDASHNS---------INVV------RGPVNVELTILKL 233

Query: 835 EFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLN 894
           +   +           T     +    +      +D S N  +  +     +++ L  L 
Sbjct: 234 QHNNL-----------TDTAWLLNYPGL----VEVDLSYNELEKIMYHPFVKMQRLERLY 278

Query: 895 LSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLVGKIPI 954
           +S N L   +      +  L+ LDLS NHL   +         L  L L HN++V  + +
Sbjct: 279 ISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKL 335

Query: 955 ST 956
           ST
Sbjct: 336 ST 337

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 95.1 bits (237), Expect = 7e-21
 Identities = 64/407 (15%), Positives = 129/407 (31%), Gaps = 69/407 (16%)

Query: 542 NLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPIT 601
           +   Q      D+  +  + ++     +I   + + +   ++ +  L     +     + 
Sbjct: 14  DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP-AALLDSFRQVE 72

Query: 602 VLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIP 661
           +L+L+  Q+                        I      +        +  N+I  + P
Sbjct: 73  LLNLNDLQI----------------------EEIDTYAFAYAHTIQKLYMGFNAIRYLPP 110

Query: 662 ETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHT 721
                   L VL L +N LS           + L  L++  N+L      TF     L  
Sbjct: 111 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK-LTTLSMSNNNLERIEDDTFQATTSLQN 169

Query: 722 LDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNI 781
           L L+ N+L   V   L+   +L   ++  N +       L    ++  L    N    +I
Sbjct: 170 LQLSSNRLT-HVD--LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHN----SI 217

Query: 782 SCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIAD 841
           +      +  +L I+ L  NN         +T    +++          +V   + ++  
Sbjct: 218 NVVRGPVN-VELTILKLQHNN---------LTDTAWLLN-----YPGLVEVDLSYNELEK 262

Query: 842 FYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALT 901
                        +       +     +  S N     +      + +L  L+LS N L 
Sbjct: 263 -------------IMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL 308

Query: 902 GPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNL 948
             +        +LE+L L  N +     ++L+    L  L LSHN+ 
Sbjct: 309 H-VERNQPQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDW 351

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  133 bits (335), Expect = 3e-32
 Identities = 72/391 (18%), Positives = 123/391 (31%), Gaps = 73/391 (18%)

Query: 285 LETLDLSGNSLLQGSLPD-FPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYF 343
              L++  + L   +LPD  P +  + TL++ + N +  LP     L+ L      L   
Sbjct: 42  NAVLNVGESGL--TTLPDCLPAH--ITTLVIPDNNLT-SLPALPPELRTLEVSGNQL--- 93

Query: 344 DGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLS 403
             S+P     L +L             +P+L     L  L +  N L     ++      
Sbjct: 94  -TSLPVLPPGLLELSIFSNPLTH----LPALP--SGLCKLWIFGNQL-----TSLPVLPP 141

Query: 404 NLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNR 463
            L  + +  N L  S+P     L    +L    N+   L    S      L  + +S N+
Sbjct: 142 GLQELSVSDNQLA-SLPALPSEL---CKLWAYNNQLTSLPMLPSG-----LQELSVSDNQ 192

Query: 464 LEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSF 523
           L   +P    +L  L      +N+L     L A+     L +L +S N LT       S 
Sbjct: 193 LAS-LPTLPSELYKLWAY---NNRLT---SLPAL--PSGLKELIVSGNRLT-------SL 236

Query: 524 PSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHN 583
           P     L+                    L +S N+++  +P          L  L++  N
Sbjct: 237 PVLPSELK-------------------ELMVSGNRLT-SLPM---LPSG--LLSLSVYRN 271

Query: 584 LLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFV 643
            L+ L  P S+  LS  T ++L  N L         +       +               
Sbjct: 272 QLTRL--PESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPR 329

Query: 644 SFTLFFSLSNNSITGVIPETLCRAKYLLVLD 674
                   + + +          A    +  
Sbjct: 330 ETRALHLAAADWLVPAREGEPAPADRWHMFG 360

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  119 bits (301), Expect = 4e-28
 Identities = 79/402 (19%), Positives = 131/402 (32%), Gaps = 102/402 (25%)

Query: 402 LSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSG 461
            +    +++  + L  ++P  L +   +  L + +N    L           L T+++SG
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLPAH--ITTLVIPDNNLTSLPALPPE-----LRTLEVSG 90

Query: 462 NRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDS 521
           N+L   +P+    L  L I       L              L KL +  N LT       
Sbjct: 91  NQLTS-LPVLPPGLLELSIFSNPLTHLPAL--------PSGLCKLWIFGNQLT------- 134

Query: 522 SFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLS 581
           S P                P L+       L +SDNQ++  +P          L  L   
Sbjct: 135 SLPVL-------------PPGLQE------LSVSDNQLA-SLPA---LPSE--LCKLWAY 169

Query: 582 HNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGN 641
           +N L+SL  P   S L     L +  NQL                      +S+P     
Sbjct: 170 NNQLTSL--PMLPSGL---QELSVSDNQL----------------------ASLPTLPSE 202

Query: 642 FVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLR 701
                      NN +T  +P        L  L +S N+L+  +P    +    L  L + 
Sbjct: 203 LYKLWA----YNNRLT-SLPALPSG---LKELIVSGNRLTS-LPVLPSE----LKELMVS 249

Query: 702 GNSLSGTLSVTFPGNCG-LHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWW 760
           GN L+     + P     L +L +  NQL   +P+SL +  +   ++L  N +       
Sbjct: 250 GNRLT-----SLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS-ERTL- 301

Query: 761 LENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNN 802
            + +  +      S      I     G S P+       +  
Sbjct: 302 -QALREITSAPGYSGP---IIRFDMAGASAPRETRALHLAAA 339

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  118 bits (298), Expect = 1e-27
 Identities = 71/335 (21%), Positives = 120/335 (35%), Gaps = 79/335 (23%)

Query: 352 ANLTQLVYLDLSFNKFVGPIPSL--HMSKNLTHLDLSYN---ALPGAISSTDWEHLSNLV 406
                   L++  +     + +L   +  ++T L +  N   +LP             L 
Sbjct: 37  CLNNGNAVLNVGESG----LTTLPDCLPAHITTLVIPDNNLTSLP--------ALPPELR 84

Query: 407 YVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEG 466
            +++  N L  S+P     L  L            L         S L  + + GN+L  
Sbjct: 85  TLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALP--------SGLCKLWIFGNQLTS 135

Query: 467 PIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQ 526
            +P+       L+ L +S N+L     L        L KL    N LT    S    PS 
Sbjct: 136 -LPVLP---PGLQELSVSDNQLASLPAL-----PSELCKLWAYNNQLT----SLPMLPSG 182

Query: 527 VRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLS 586
           ++ L ++  +L  +P L   S+L+ L   +N+++  +P          L+ L +S N L+
Sbjct: 183 LQELSVSDNQLASLPTLP--SELYKLWAYNNRLT-SLPA---LPSG--LKELIVSGNRLT 234

Query: 587 SLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFT 646
           SL  P   S+L     L +  N+L                       S+P      +S  
Sbjct: 235 SL--PVLPSEL---KELMVSGNRLT----------------------SLPMLPSGLLS-- 265

Query: 647 LFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLS 681
              S+  N +T  +PE+L        ++L  N LS
Sbjct: 266 --LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  108 bits (270), Expect = 3e-24
 Identities = 85/413 (20%), Positives = 135/413 (32%), Gaps = 65/413 (15%)

Query: 126 LTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAEL 185
                 LN+  +G    +P  +     + TL +               NL+ L     EL
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDN------------NLTSLPALPPEL 83

Query: 186 RELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQN 245
           R L + G  ++        +L  L P L  LS+ S  L+  +    + L  L    +  N
Sbjct: 84  RTLEVSGNQLT--------SLPVLPPGLLELSIFSNPLT-HLPALPSGLCKLW---IFGN 131

Query: 246 DLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPK 305
            L S +P        L  L +S ++L  + P    +   L  L    N L   SLP  P 
Sbjct: 132 QLTS-LPVLPP---GLQELSVSDNQLA-SLPALPSE---LCKLWAYNNQL--TSLPMLP- 180

Query: 306 NSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFN 365
            S L+ L +S+   +  LP     L  L   +  L     S+P   + L +   L +S N
Sbjct: 181 -SGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLT----SLPALPSGLKE---LIVSGN 231

Query: 366 KFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDW-EHLSNLVYVDLRYNSLNGSIPGSLF 424
           +    +P L     L  L +S N L      T      S L+ + +  N L   +P SL 
Sbjct: 232 RLTS-LPVLP--SELKELMVSGNRL------TSLPMLPSGLLSLSVYRNQLT-RLPESLI 281

Query: 425 SLPMLQQLQLAENKFGGLIPEFSNASSSALDTI--DLSGNRLEGPIPMSIFDLRNLKILI 482
            L     + L  N       +     +SA       +  +      P     L       
Sbjct: 282 HLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADW 341

Query: 483 LSSNKLNGTVQLAAIQRLHNLAKLE-----LSYNNLTVNAGSDSSFPSQVRTL 530
           L   +                   +     L   + T N   D+ F +Q+ + 
Sbjct: 342 LVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDAGFKAQISSW 394

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  106 bits (267), Expect = 6e-24
 Identities = 67/318 (21%), Positives = 114/318 (35%), Gaps = 49/318 (15%)

Query: 462 NRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDS 521
            R      M         +L +  + L  T     +    ++  L +  NNLT    S  
Sbjct: 26  GRAAVVQKMRACLNNGNAVLNVGESGL--TTLPDCL--PAHITTLVIPDNNLT----SLP 77

Query: 522 SFPSQVRTLRLASCKLRVIPN-LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNL 580
           + P ++RTL ++  +L  +P       +L         +               L  L +
Sbjct: 78  ALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSG---------LCKLWI 128

Query: 581 SHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIG 640
             N L+SL  P     L     L +  NQL  ++P  P +   +   NN  T S+P    
Sbjct: 129 FGNQLTSL--PVLPPGL---QELSVSDNQLA-SLPALPSELCKLWAYNNQLT-SLPMLPS 181

Query: 641 NFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNL 700
                +    +S+N +   +P        L  L    N+L     T L  +   L  L +
Sbjct: 182 GLQELS----VSDNQLA-SLPTLPSE---LYKLWAYNNRL-----TSLPALPSGLKELIV 228

Query: 701 RGNSLSGTLSVTFPGNCG-LHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPW 759
            GN L+     + P     L  L ++GN+L  ++P   +    L+ L +  N++    P 
Sbjct: 229 SGNRLT-----SLPVLPSELKELMVSGNRL-TSLPMLPS---GLLSLSVYRNQLT-RLPE 278

Query: 760 WLENISSLRVLVLRSNSF 777
            L ++SS   + L  N  
Sbjct: 279 SLIHLSSETTVNLEGNPL 296

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 97.3 bits (242), Expect = 7e-21
 Identities = 68/338 (20%), Positives = 114/338 (33%), Gaps = 52/338 (15%)

Query: 100 SLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLS 159
               L++L ++ N    T +P     L  L+  +                 T L  L  S
Sbjct: 79  LPPELRTLEVSGNQL--TSLPVLPPGLLELSIFSNPL--------------THLPAL-PS 121

Query: 160 SLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLS 219
            L +    L +    L+ L      L+EL +    ++        +L +L  +L  L   
Sbjct: 122 GLCK----LWIFGNQLTSLPVLPPGLQELSVSDNQLA--------SLPALPSELCKLWAY 169

Query: 220 SCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKI 279
           +  L+  +    + LQ LS   +  N L S +P   +    L  L   ++RL  + P   
Sbjct: 170 NNQLTS-LPMLPSGLQELS---VSDNQLAS-LPTLPS---ELYKLWAYNNRLT-SLPALP 220

Query: 280 LQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLA 339
                L+ L +SGN L   SLP  P  S L+ LM+S    +  LP     L +LS     
Sbjct: 221 ---SGLKELIVSGNRL--TSLPVLP--SELKELMVSGNRLTS-LPMLPSGLLSLSVYRNQ 272

Query: 340 LCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDW 399
           L      +P SL +L+    ++L  N       +L   + +T        +     +   
Sbjct: 273 LT----RLPESLIHLSSETTVNLEGNPL--SERTLQALREITSAPGYSGPIIRFDMAGAS 326

Query: 400 EHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAEN 437
                        + L  +  G              +N
Sbjct: 327 APRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDN 364

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 70.3 bits (172), Expect = 2e-12
 Identities = 53/302 (17%), Positives = 95/302 (31%), Gaps = 83/302 (27%)

Query: 665 CRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCG-LHTLD 723
           C      VL++ ++ L+  +P CL      +  L +  N+L+     + P     L TL+
Sbjct: 37  CLNNGNAVLNVGESGLT-TLPDCLPA---HITTLVIPDNNLT-----SLPALPPELRTLE 87

Query: 724 LNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISC 783
           ++GNQL  ++P        L +       +           S L  L +  N        
Sbjct: 88  VSGNQLT-SLPVLPPGLLELSIFSNPLTHLP-------ALPSGLCKLWIFGNQL------ 133

Query: 784 RENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFY 843
                  P LQ + ++ N          + S  A+ S           +     ++    
Sbjct: 134 TSLPVLPPGLQELSVSDNQ---------LASLPALPS-------ELCKLWAYNNQLT--- 174

Query: 844 YQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGP 903
                          L  + S    +  S N     +P     L  L       N LT  
Sbjct: 175 --------------SLPMLPSGLQELSVSDNQLAS-LPTLPSELYKL---WAYNNRLT-S 215

Query: 904 IPSAIGNLQ-----------------QLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHN 946
           +P+    L+                 +L+ L +S N L+  +P+  + L     L++  N
Sbjct: 216 LPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLT-SLPMLPSGLL---SLSVYRN 271

Query: 947 NL 948
            L
Sbjct: 272 QL 273

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.0 bits (122), Expect = 2e-06
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 8/75 (10%)

Query: 874 NNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLA 933
            N    +P     LK    L +S N LT  +P     L    SL +  N L+ ++P  L 
Sbjct: 230 GNRLTSLPVLPSELKE---LMVSGNRLTS-LPMLPSGLL---SLSVYRNQLT-RLPESLI 281

Query: 934 NLTFLSFLNLSHNNL 948
           +L+  + +NL  N L
Sbjct: 282 HLSSETTVNLEGNPL 296

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 47.2 bits (112), Expect = 3e-05
 Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 5/96 (5%)

Query: 867 TSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSG 926
             +  S N     +P     L SL   ++ +N LT  +P ++ +L    +++L  N LS 
Sbjct: 244 KELMVSGNRLTS-LPMLPSGLLSL---SVYRNQLTR-LPESLIHLSSETTVNLEGNPLSE 298

Query: 927 QIPIQLANLTFLSFLNLSHNNLVGKIPISTQLQSFL 962
           +    L  +T     +            + +    L
Sbjct: 299 RTLQALREITSAPGYSGPIIRFDMAGASAPRETRAL 334

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  125 bits (317), Expect = 1e-31
 Identities = 60/372 (16%), Positives = 107/372 (28%), Gaps = 70/372 (18%)

Query: 321 GVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNL 380
           G       +      L              L+   +    D +         + +   N 
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSN---NP 58

Query: 381 THLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFG 440
                +  AL       +       V ++LR   L    P   F L  LQ + +      
Sbjct: 59  QIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM 117

Query: 441 GLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNK--------LNGTV 492
            L       +   L+T+ L+ N L   +P SI  L  L+ L + +          L  T 
Sbjct: 118 ELPDTMQQFAG--LETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTD 174

Query: 493 QLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNL 552
                Q L NL  L L +  +        S P+              I NL+N   L +L
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIR-------SLPAS-------------IANLQN---LKSL 211

Query: 553 DLSDNQISGEIPNWVWEIGN-VSLQYLNLSH-NLLSSLQRPFSISDLSPITVLDL-HSNQ 609
            + ++ +S  +      I +   L+ L+L     L +   P      +P+  L L   + 
Sbjct: 212 KIRNSPLS-ALGP---AIHHLPKLEELDLRGCTALRNY--PPIFGGRAPLKRLILKDCSN 265

Query: 610 LQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKY 669
           L                       ++P DI           L        +P  + +   
Sbjct: 266 L----------------------LTLPLDIHRLTQLE-KLDLRGCVNLSRLPSLIAQLPA 302

Query: 670 LLVLDLSKNKLS 681
             ++ +  +  +
Sbjct: 303 NCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  121 bits (307), Expect = 3e-30
 Identities = 66/399 (16%), Positives = 125/399 (31%), Gaps = 88/399 (22%)

Query: 228 HPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLET 287
           H           +    +  L P  + L+ +    +   +          +    +  + 
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQI 60

Query: 288 LDLSGNSLLQGSLPDFPKNSS---LRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFD 344
              +G +L   +  D  ++++      L L +       PD    L +L  + +      
Sbjct: 61  ETRTGRAL--KATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM 117

Query: 345 GSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSN 404
             +P ++     L  L L+ N                       ALP +I+      L+ 
Sbjct: 118 -ELPDTMQQFAGLETLTLARNPLR--------------------ALPASIA-----SLNR 151

Query: 405 LVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRL 464
           L  + +R       +P  L S     + Q   N                L ++ L    +
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVN----------------LQSLRLEWTGI 195

Query: 465 EGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFP 524
              +P SI +L+NLK L + ++ L  +    AI  L  L +L+L                
Sbjct: 196 RS-LPASIANLQNLKSLKIRNSPL--SALGPAIHHLPKLEELDLRGCT------------ 240

Query: 525 SQVRTLRLASCKLRVIPN-LKNQSKLFNLDLSD-NQISGEIPNWVWEIGN-VSLQYLNLS 581
                       LR  P     ++ L  L L D + +   +P    +I     L+ L+L 
Sbjct: 241 -----------ALRNYPPIFGGRAPLKRLILKDCSNLL-TLPL---DIHRLTQLEKLDLR 285

Query: 582 HNL-LSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPP 619
             + LS L  P  I+ L    ++ +  +       + P 
Sbjct: 286 GCVNLSRL--PSLIAQLPANCIILVPPHLQAQLDQHRPV 322

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  119 bits (301), Expect = 1e-29
 Identities = 65/340 (19%), Positives = 107/340 (31%), Gaps = 45/340 (13%)

Query: 123 LGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNL 182
               +   NL    +         +S   R    D +              + +    N 
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNR------------WHSAWRQANS 55

Query: 183 AELRELYLDGANISA--PGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVI 240
              +     G  + A    +E         P    L L S  L         +L  L  +
Sbjct: 56  NNPQIETRTGRALKATADLLEDAT-----QPGRVALELRSVPLPQ-FPDQAFRLSHLQHM 109

Query: 241 RLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSL 300
            +D   L+  +P+ +  F  L +L L+ + L    P  I  ++ L  L +     L   L
Sbjct: 110 TIDAAGLME-LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELT-EL 166

Query: 301 PD----------FPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTS 350
           P+               +L++L L  T     LP SI NL+NL  L +       ++  +
Sbjct: 167 PEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPA 224

Query: 351 LANLTQLVYLDLSFNKFVGPIP-SLHMSKNLTHLDLSYN----ALPGAISSTDWEHLSNL 405
           + +L +L  LDL     +   P        L  L L        LP  I       L+ L
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR-----LTQL 279

Query: 406 VYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPE 445
             +DLR       +P  +  LP    + +  +    L   
Sbjct: 280 EKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  110 bits (278), Expect = 2e-26
 Identities = 53/338 (15%), Positives = 108/338 (31%), Gaps = 50/338 (14%)

Query: 451 SSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSY 510
           SS  + +   G+    P    +   +       +                +N      + 
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS-----AWRQANSNNPQIETRTG 65

Query: 511 NNLTVNAGS-DSSFPSQVRTLRLASCKLRVIPN-LKNQSKLFNLDLSDNQISGEIPNWVW 568
             L   A   + +       L L S  L   P+     S L ++ +    +  E+P+   
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPD--- 121

Query: 569 EIGN-VSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYS 627
            +     L+ L L+ N L +L  P SI+ L+ +  L +                      
Sbjct: 122 TMQQFAGLETLTLARNPLRAL--PASIASLNRLRELSI---------------------R 158

Query: 628 NNSFTSSIPDDIGNFVSFTLF--------FSLSNNSITGVIPETLCRAKYLLVLDLSKNK 679
                + +P+ + +  +              L    I   +P ++   + L  L +  + 
Sbjct: 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSP 217

Query: 680 LSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNC-GLHTLDL-NGNQLGGTVPKSL 737
           LS  +   +  + + L  L+LRG +        F G    L  L L + + L  T+P  +
Sbjct: 218 LS-ALGPAIHHLPK-LEELDLRGCTALRNYPPIF-GGRAPLKRLILKDCSNLL-TLPLDI 273

Query: 738 ANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSN 775
                L  LDL         P  +  + +  ++++  +
Sbjct: 274 HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  107 bits (269), Expect = 3e-25
 Identities = 60/289 (20%), Positives = 105/289 (36%), Gaps = 42/289 (14%)

Query: 81  LDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFA 140
              +  ++ A  D            +L L        + P     L++L ++ +  AG  
Sbjct: 61  ETRTGRALKATADLLEDATQPG-RVALELRSVPL--PQFPDQAFRLSHLQHMTIDAAGLM 117

Query: 141 GQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGL---LQNLAELRELYLDGANISA 197
            ++P  +     L TL L+               L  L   + +L  LREL +       
Sbjct: 118 -ELPDTMQQFAGLETLTLA------------RNPLRALPASIASLNRLRELSIRACP--- 161

Query: 198 PGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLAD 257
                         +L  L                 L +L  +RL+   + S +P  +A+
Sbjct: 162 --------------ELTELPEPLASTDAS--GEHQGLVNLQSLRLEWTGIRS-LPASIAN 204

Query: 258 FFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKN-SSLRTLMLSN 316
             NL SL++ +S L+      I  +  LE LDL G + L+ + P      + L+ L+L +
Sbjct: 205 LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALR-NYPPIFGGRAPLKRLILKD 262

Query: 317 TNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFN 365
            +    LP  I  L  L +LDL  C     +P+ +A L     + +  +
Sbjct: 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 79.6 bits (197), Expect = 5e-16
 Identities = 46/219 (21%), Positives = 71/219 (32%), Gaps = 22/219 (10%)

Query: 98  LFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLD 157
            F L +LQ + +        E+P  +     L  L L+       +P  ++ + RL  L 
Sbjct: 100 AFRLSHLQHMTIDAAGL--MELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156

Query: 158 LSSLNRFGA-PLKLENPNLSGLLQNLAELRELYLDGANISA--PGIEWCQALSSLV---- 210
           + +       P  L + + SG  Q L  L+ L L+   I +    I   Q L SL     
Sbjct: 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS 216

Query: 211 ------------PKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADF 258
                       PKL+ L L  C       P       L  + L     L  +P  +   
Sbjct: 217 PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL 276

Query: 259 FNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQ 297
             L  L L         P  I Q+     + +  +   Q
Sbjct: 277 TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 68.8 bits (169), Expect = 2e-12
 Identities = 38/251 (15%), Positives = 72/251 (28%), Gaps = 50/251 (19%)

Query: 528 RTLRLASC-KLRVIPN-LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLL 585
             L       LR   + L    + +N D +    +    N        + Q    +   L
Sbjct: 15  ENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSN------NPQIETRTGRAL 68

Query: 586 SSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSF 645
            +       +       L+L S  L                         PD        
Sbjct: 69  KATADLLEDATQPGRVALELRSVPLP----------------------QFPDQAFRLSHL 106

Query: 646 TLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSL 705
               ++    +   +P+T+ +   L  L L++N L   +P  +  ++  L  L++R    
Sbjct: 107 Q-HMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNR-LRELSIRACPE 162

Query: 706 SGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENIS 765
              L      +                         NL  L L    IR + P  + N+ 
Sbjct: 163 LTELPEPL-AST--------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQ 206

Query: 766 SLRVLVLRSNS 776
           +L+ L +R++ 
Sbjct: 207 NLKSLKIRNSP 217

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 67.3 bits (165), Expect = 6e-12
 Identities = 18/87 (20%), Positives = 37/87 (42%), Gaps = 3/87 (3%)

Query: 867 TSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSG 926
            +++          P++  RL  L  + +    L   +P  +     LE+L L+ N L  
Sbjct: 84  VALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLME-LPDTMQQFAGLETLTLARNPLR- 140

Query: 927 QIPIQLANLTFLSFLNLSHNNLVGKIP 953
            +P  +A+L  L  L++     + ++P
Sbjct: 141 ALPASIASLNRLRELSIRACPELTELP 167

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 64.6 bits (158), Expect = 4e-11
 Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 8/113 (7%)

Query: 880 IPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLS 939
           +P  I  L++L  L +  + L+  +  AI +L +LE LDL         P        L 
Sbjct: 198 LPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256

Query: 940 FLNLSHNNLVGKIPIS----TQLQSFLATSFEGNKGLCGPPLNVCRTNSSKAL 988
            L L   + +  +P+     TQL+        G   L   P  + +  ++  +
Sbjct: 257 RLILKDCSNLLTLPLDIHRLTQLEKL---DLRGCVNLSRLPSLIAQLPANCII 306

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.3 bits (147), Expect = 1e-09
 Identities = 19/83 (22%), Positives = 28/83 (33%), Gaps = 2/83 (2%)

Query: 867 TSIDFSRNNFDGPIPEEIGRLKSLHGLNLS-QNALTGPIPSAIGNLQQLESLDLSMNHLS 925
             +D          P   G    L  L L   + L   +P  I  L QLE LDL      
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT-LPLDIHRLTQLEKLDLRGCVNL 290

Query: 926 GQIPIQLANLTFLSFLNLSHNNL 948
            ++P  +A L     + +  +  
Sbjct: 291 SRLPSLIAQLPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.5 bits (137), Expect = 2e-08
 Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 11/91 (12%)

Query: 867 TSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSG 926
             +          +P+ + +   L  L L++N L   +P++I +L +L  L +       
Sbjct: 107 QHMTIDAAGLME-LPDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELT 164

Query: 927 QIPIQLANLTF---------LSFLNLSHNNL 948
           ++P  LA+            L  L L    +
Sbjct: 165 ELPEPLASTDASGEHQGLVNLQSLRLEWTGI 195

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 47.6 bits (114), Expect = 1e-05
 Identities = 11/57 (19%), Positives = 20/57 (35%)

Query: 880 IPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLT 936
           +P +I RL  L  L+L        +PS I  L     + +  +  +     +     
Sbjct: 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 42.6 bits (101), Expect = 5e-04
 Identities = 12/103 (11%), Positives = 30/103 (29%), Gaps = 22/103 (21%)

Query: 867 TSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPI-------------------PSA 907
            ++ F  +    P  + + + +  +  + ++                             
Sbjct: 15  ENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADL 74

Query: 908 IGNLQQ--LESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNL 948
           + +  Q    +L+L    L  Q P Q   L+ L  + +    L
Sbjct: 75  LEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL 116

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  127 bits (321), Expect = 7e-31
 Identities = 93/499 (18%), Positives = 187/499 (37%), Gaps = 30/499 (6%)

Query: 287 TLDLSGNSLLQGSLP-DFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDG 345
            +D S N L+   +P D         L +S    S +    I +L  L  L ++      
Sbjct: 4   LVDRSKNGLI--HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY 59

Query: 346 SIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNL 405
              +      +L YLDLS NK V  I       NL HLDLS+NA        ++ ++S L
Sbjct: 60  LDISVFKFNQELEYLDLSHNKLVK-ISCHPT-VNLKHLDLSFNAFDALPICKEFGNMSQL 117

Query: 406 VYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLE 465
            ++ L    L  S    +  L + + L +          +         +T  L      
Sbjct: 118 KFLGLSTTHLEKSSVLPIAHLNISKVLLVLGET---YGEKEDPEGLQDFNTESLHIVFPT 174

Query: 466 GPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPS 525
                 I D+    +  L  + +   ++        ++     +   L+    ++     
Sbjct: 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234

Query: 526 QVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLL 585
                         I  L   + ++   +S+ ++ G++    ++    SL+ L++   + 
Sbjct: 235 N---------SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVS 285

Query: 586 SSLQRPFSI--SDLSPITVLDLHSNQLQG---NIPYPPPKAVLVDYSNNSFTSSIPDDIG 640
                P S      S + + +   +  +      P      + +D+SNN  T ++ ++ G
Sbjct: 286 DVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCG 345

Query: 641 NFVSFTLFFSLSNNSITGV--IPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVL 698
           +         L  N +  +  I E   + K L  LD+S+N +S          ++ L  L
Sbjct: 346 HLTELE-TLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL 404

Query: 699 NLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFP 758
           N+  N L+ T+    P    +  LDL+ N++  ++PK +     L  L++ +N+++    
Sbjct: 405 NMSSNILTDTIFRCLPPR--IKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQLKSVPD 461

Query: 759 WWLENISSLRVLVLRSNSF 777
              + ++SL+ + L +N +
Sbjct: 462 GIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  113 bits (284), Expect = 3e-26
 Identities = 87/505 (17%), Positives = 169/505 (33%), Gaps = 74/505 (14%)

Query: 104 LQSLNLAFNMFNATEIPSG-LGSLTNLTNLNLSNAGFAGQIPIQV-SGMTRLVTLDLSSL 161
              LN++ N    +E+ +  + SL+ L  L +S+      + I V      L  LDLS  
Sbjct: 23  TTILNISQN--YISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSH- 78

Query: 162 NRFGAPLKLENPNLSGL-LQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSS 220
           N+           L  +       L+ L L      A  +  C+   ++  +L+ L LS+
Sbjct: 79  NK-----------LVKISCHPTVNLKHLDLSFNAFDA--LPICKEFGNM-SQLKFLGLST 124

Query: 221 CYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKIL 280
            +L       +A L    V+ +                 +  +  L            IL
Sbjct: 125 THLEKSSVLPIAHLNISKVLLVLGETYGEKED--PEGLQDFNTESLHIVFPTNKEFHFIL 182

Query: 281 QVHTLETLDLSGNSL-----------LQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGN 329
            V      +L  +++               L     N  L  L L+N   +      I  
Sbjct: 183 DVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQ 242

Query: 330 L---KNLSRLDLALCYFDGSIPTSLA-----NLTQLVYLDLSFNKFVGPIPSLHMS-KNL 380
           L     +    ++     G +          +L  L    +  + F  P   ++    N+
Sbjct: 243 LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNM 302

Query: 381 THLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFG 440
              + + +     +       +S  +++D   N L  ++  +   L  L+ L L  N+  
Sbjct: 303 NIKNFTVSGTR-MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361

Query: 441 GLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFD-LRNLKILILSSNKLNGTVQLAAIQR 499
            L                             +   +++L+ L +S N ++   +      
Sbjct: 362 EL------------------------SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW 397

Query: 500 LHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPN-LKNQSKLFNLDLSDNQ 558
             +L  L +S N LT         P +++ L L S K++ IP  +     L  L+++ NQ
Sbjct: 398 TKSLLSLNMSSNILT--DTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQ 455

Query: 559 ISGEIPNWVWEIGNVSLQYLNLSHN 583
           +   +P+ +++    SLQ + L  N
Sbjct: 456 LK-SVPDGIFD-RLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  111 bits (278), Expect = 2e-25
 Identities = 85/473 (17%), Positives = 171/473 (36%), Gaps = 56/473 (11%)

Query: 183 AELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHP------------- 229
            +   L +    IS   +     + SL  KL++L +S   +   +               
Sbjct: 21  QKTTILNISQNYISE--LWT-SDILSL-SKLRILIISHNRIQY-LDISVFKFNQELEYLD 75

Query: 230 ---------SLAKLQSLSVIRLDQNDLLS-PVPEFLADFFNLTSLRLSHSRLNGTFPEKI 279
                    S     +L  + L  N   + P+ +   +   L  L LS + L  +    I
Sbjct: 76  LSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPI 135

Query: 280 LQVHTLETLDLSGNSLLQGSLPDFPKN---SSLRTLMLSNTNFSGVLPDSIGNLKNLSRL 336
             ++  + L + G +  +   P+  ++    SL  +  +N  F  +L  S+  + NL   
Sbjct: 136 AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195

Query: 337 DLALCYFDGSIPTSLANLTQ-----------LVYLDLSFNKFVGPIPSLHMSKNLTHLDL 385
           ++     D      L+ L +           L  ++ ++N F+  I  L     + +  +
Sbjct: 196 NIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIR-ILQLVWHTTVWYFSI 254

Query: 386 SYNALPGAISSTDWEH----LSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGG 441
           S   L G +   D+++    L  L    +  +               +       +    
Sbjct: 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT-R 313

Query: 442 LIPEFSNASSSALDTIDLSGNRLEGPIPMSIFD-LRNLKILILSSNKLNGTVQLA-AIQR 499
           ++     +  S    +D S N L           L  L+ LIL  N+L    ++A    +
Sbjct: 314 MVHMLCPSKISPFLHLDFSNNLLTD-TVFENCGHLTELETLILQMNQLKELSKIAEMTTQ 372

Query: 500 LHNLAKLELSYNNLTVNAGSDS-SFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQ 558
           + +L +L++S N+++ +      S+   + +L ++S  L          ++  LDL  N+
Sbjct: 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNK 432

Query: 559 ISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQ 611
           I   IP  V ++    LQ LN++ N L S+        L+ +  + LH+N   
Sbjct: 433 IK-SIPKQVVKLEA--LQELNVASNQLKSVPDG-IFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  105 bits (263), Expect = 1e-23
 Identities = 76/441 (17%), Positives = 150/441 (34%), Gaps = 42/441 (9%)

Query: 81  LDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFA 140
           LDLS   +               L+ L+L+FN F+A  I    G+++ L  L LS     
Sbjct: 74  LDLSHNKLV-----KISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128

Query: 141 GQI--PIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAP 198
                PI    +++++ +   +      P  L++ N   L       +E +         
Sbjct: 129 KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKT 188

Query: 199 GIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLAD- 257
                 +    V +    S     L+           +L+ I    N  +  +       
Sbjct: 189 VANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT 248

Query: 258 --FFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLS 315
             +F++++++L        F      +  L    +  +         +   S++     +
Sbjct: 249 VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFT 308

Query: 316 NTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKF--VGPIPS 373
            +    V       +     LD +      ++  +  +LT+L  L L  N+   +  I  
Sbjct: 309 VSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAE 368

Query: 374 L-HMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQL 432
           +    K+L  LD+S N++       D     +L+ +++  N L  +I   L     ++ L
Sbjct: 369 MTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR--IKVL 426

Query: 433 QLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTV 492
                                    DL  N+++  IP  +  L  L+ L ++SN+L  +V
Sbjct: 427 -------------------------DLHSNKIKS-IPKQVVKLEALQELNVASNQLK-SV 459

Query: 493 QLAAIQRLHNLAKLELSYNNL 513
                 RL +L K+ L  N  
Sbjct: 460 PDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =   99 bits (249), Expect = 7e-22
 Identities = 87/566 (15%), Positives = 167/566 (29%), Gaps = 95/566 (16%)

Query: 360 LDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSI 419
           +D S N  +  +P   +S+  T L++S N +   + ++D   LS L  + + +N +    
Sbjct: 5   VDRSKNGLIH-VPK-DLSQKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLD 61

Query: 420 PGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFD-LRNL 478
                    L+ L L+ NK   +    S   +  L  +DLS N  +       F  +  L
Sbjct: 62  ISVFKFNQELEYLDLSHNKLVKI----SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQL 117

Query: 479 KILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLR 538
           K L LS+  L     +  I  L+    L +           +        +L +     +
Sbjct: 118 KFLGLSTTHLE-KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNK 176

Query: 539 VIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLS 598
               + + S     +L  + I   + +         L  L  +  L +        +  S
Sbjct: 177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS 236

Query: 599 PITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITG 658
            I +L L  +                  SN      +             F  S  S+  
Sbjct: 237 FIRILQLVWH----------TTVWYFSISNVKLQGQLDFR---------DFDYSGTSL-- 275

Query: 659 VIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCG 718
                    K L +  +  +             S  + + N   +       +       
Sbjct: 276 ---------KALSIHQVVSDVFGFPQSYIYEIFSN-MNIKNFTVSGTRMVHMLCPSKISP 325

Query: 719 LHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIR--DTFPWWLENISSLRVLVLRSNS 776
              LD + N L  TV ++  +   L  L L  N+++           + SL+ L +  NS
Sbjct: 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385

Query: 777 FYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEF 836
                  + +      L  ++++SN     + +                           
Sbjct: 386 V-SYDEKKGDCSWTKSLLSLNMSSNILTDTIFR--------------------------- 417

Query: 837 LKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLS 896
                                    +      +D   N     IP+++ +L++L  LN++
Sbjct: 418 ------------------------CLPPRIKVLDLHSNKIKS-IPKQVVKLEALQELNVA 452

Query: 897 QNALTGPIPSAIGNLQQLESLDLSMN 922
            N L          L  L+ + L  N
Sbjct: 453 SNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 86.8 bits (215), Expect = 8e-18
 Identities = 87/467 (18%), Positives = 171/467 (36%), Gaps = 52/467 (11%)

Query: 502 NLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPN--LKNQSKLFNLDLSDNQI 559
               L +S N ++    SD    S++R L ++  +++ +     K   +L  LDLS N++
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81

Query: 560 SGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQ----GNIP 615
                +       V+L++L+LS N   +L       ++S +  L L +  L+      I 
Sbjct: 82  VKISCHPT-----VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136

Query: 616 YPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDL 675
           +     VL+           P+ + +F + +L      N     I +     K +  L+L
Sbjct: 137 HLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILD--VSVKTVANLEL 194

Query: 676 SKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPK 735
           S  K   +   C   +S +  +      S     ++    N  +  L L        V  
Sbjct: 195 SNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL--------VWH 246

Query: 736 SLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQI 795
           +     ++  + L        F +   ++ +L +  + S+ F    S      S   ++ 
Sbjct: 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKN 306

Query: 796 VDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTS-KG 854
             ++       V   C +             S F  + F    + D  +++   +T  + 
Sbjct: 307 FTVSGTRM---VHMLCPSK-----------ISPFLHLDFSNNLLTDTVFENCGHLTELET 352

Query: 855 LEMELVKILSIF------------TSIDFSRNNFDGPIPEEI-GRLKSLHGLNLSQNALT 901
           L +++ ++  +               +D S+N+      +      KSL  LN+S N LT
Sbjct: 353 LILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412

Query: 902 GPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNL 948
             I   +    +++ LDL  N +   IP Q+  L  L  LN++ N L
Sbjct: 413 DTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL 456

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.2 bits (99), Expect = 8e-04
 Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 885 GRLKSLHGLNLSQNALTG-PIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNL 943
               +L  L+LS NA    PI    GN+ QL+ L LS  HL     + +A+L     L +
Sbjct: 87  HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLV 146

Query: 944 SHNNLVGKIPIST 956
                  K     
Sbjct: 147 LGETYGEKEDPEG 159

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  127 bits (321), Expect = 1e-30
 Identities = 62/356 (17%), Positives = 120/356 (33%), Gaps = 33/356 (9%)

Query: 276 PEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSR 335
              +        + +   +       +    ++ + +   N+    +    + + + +  
Sbjct: 20  DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 79

Query: 336 LDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVG-PIPSLHMSKNLTHLDLSYNALPGAI 394
           L+L     +     + A    +  L + FN     P         LT L L  N L  ++
Sbjct: 80  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-SSL 138

Query: 395 SSTDWEHLSNLVYVDLRYNSLNGSIPGSLFS-LPMLQQLQLAENKFGGLIPE-FSN---- 448
               + +   L  + +  N+L   I    F     LQ LQL+ N+   +      +    
Sbjct: 139 PRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA 197

Query: 449 ----------ASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQ 498
                     A   A++ +D S N +   +   +     L IL L  N L      A + 
Sbjct: 198 NVSYNLLSTLAIPIAVEELDASHNSINV-VRGPVN--VELTILKLQHNNLT---DTAWLL 251

Query: 499 RLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPN-LKNQSKLFNLDLSDN 557
               L +++LSYN L            ++  L +++ +L  +    +    L  LDLS N
Sbjct: 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN 311

Query: 558 QISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGN 613
            +   +     +     L+ L L HN + +L+    +S    +  L L  N    N
Sbjct: 312 HLL-HVERNQPQFDR--LENLYLDHNSIVTLK----LSTHHTLKNLTLSHNDWDCN 360

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  123 bits (309), Expect = 3e-29
 Identities = 73/354 (20%), Positives = 127/354 (35%), Gaps = 30/354 (8%)

Query: 213 LQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLN 272
              + +               L +  ++    + +       L  F  +  L L+  ++ 
Sbjct: 29  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 88

Query: 273 GTFPEKILQ-VHTLETLDLSGNSLLQGSLPD--FPKNSSLRTLMLSNTNFSGVLPDSIGN 329
                      HT++ L +  N++    LP   F     L  L+L   + S +      N
Sbjct: 89  -EIDTYAFAYAHTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 145

Query: 330 LKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMS--KNLTHLDLSY 387
              L+ L ++    +     +    T L  L LS N+    +  + +S   +L H ++SY
Sbjct: 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR----LTHVDLSLIPSLFHANVSY 201

Query: 388 NALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFS 447
           N L      +       +  +D  +NS+N  + G +     L  L+L  N          
Sbjct: 202 NLL------STLAIPIAVEELDASHNSIN-VVRGPVN--VELTILKLQHNNLTD-TAWLL 251

Query: 448 NASSSALDTIDLSGNRLEGPIPMSIFD-LRNLKILILSSNKLNGTVQLAAIQRLHNLAKL 506
           N     L  +DLS N LE  I    F  ++ L+ L +S+N+L         Q +  L  L
Sbjct: 252 NYPG--LVEVDLSYNELEK-IMYHPFVKMQRLERLYISNNRL--VALNLYGQPIPTLKVL 306

Query: 507 ELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQIS 560
           +LS+N+L     +   F   +  L L    +  +  L     L NL LS N   
Sbjct: 307 DLSHNHLLHVERNQPQFDR-LENLYLDHNSIVTLK-LSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  121 bits (305), Expect = 1e-28
 Identities = 93/537 (17%), Positives = 176/537 (32%), Gaps = 78/537 (14%)

Query: 105 QSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNRF 164
           Q  N+         I S L       ++++           +   +     +   + +  
Sbjct: 5   QRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKN-STM 63

Query: 165 GAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLS 224
               KL     + LL +  ++  L L+   I                             
Sbjct: 64  R---KLP----AALLDSFRQVELLNLNDLQIEE--------------------------- 89

Query: 225 GPIHP-SLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQ-V 282
             I   + A   ++  + +  N +    P    +   LT L L  + L+ + P  I    
Sbjct: 90  --IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNT 146

Query: 283 HTLETLDLSGNSLLQGSLPD--FPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLAL 340
             L TL +S N+L    + D  F   +SL+ L LS+   + V    +  + +L   +++ 
Sbjct: 147 PKLTTLSMSNNNL--ERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSY 201

Query: 341 CYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWE 400
                   ++LA    +  LD S N     +    ++  LT L L +N L     +    
Sbjct: 202 NLL-----STLAIPIAVEELDASHNSINV-VRG-PVNVELTILKLQHNNL---TDTAWLL 251

Query: 401 HLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLS 460
           +   LV VDL YN L   +      +  L++L ++ N+   L        +  L  +DLS
Sbjct: 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT--LKVLDLS 309

Query: 461 GNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSD 520
            N L   +  +      L+ L L  N +  T++L+     H L  L LS+N+   N  S 
Sbjct: 310 HNHLLH-VERNQPQFDRLENLYLDHNSIV-TLKLST---HHTLKNLTLSHNDWDCN--SL 362

Query: 521 SSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNL 580
            +    V    +         + + +  L   +                  +  LQY+ L
Sbjct: 363 RALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDK------------PYLDRLLQYIAL 410

Query: 581 SHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPD 637
           +  +    +     S    I  +   S+ +      P      ++   N   + +  
Sbjct: 411 TSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQ 467

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  107 bits (268), Expect = 5e-24
 Identities = 85/559 (15%), Positives = 168/559 (30%), Gaps = 57/559 (10%)

Query: 81  LDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSG-LGSLTNLTNLNLSNAGF 139
            D+  +  +  +       +L   + +    +     ++P+  L S   +  LNL++   
Sbjct: 30  YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQI 87

Query: 140 AGQIPIQVSGMTRLVTLDLSSLNR--------FGAPLKLENPNLS---------GLLQNL 182
                   +    +  L +   N         F     L    L          G+  N 
Sbjct: 88  EEIDTYAFAYAHTIQKLYMGF-NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT 146

Query: 183 AELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRL 242
            +L  L +   N+    IE      +    LQ L LSS  L+   H  L+ + SL    +
Sbjct: 147 PKLTTLSMSNNNLER--IED-DTFQAT-TSLQNLQLSSNRLT---HVDLSLIPSLFHANV 199

Query: 243 DQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPD 302
             N L +     LA    +  L  SH+ +N      +     L  L L  N+L       
Sbjct: 200 SYNLLST-----LAIPIAVEELDASHNSIN-VVRGPVNV--ELTILKLQHNNLT--DTAW 249

Query: 303 FPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDL 362
                 L  + LS      ++      ++ L RL ++      ++      +  L  LDL
Sbjct: 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTLKVLDL 308

Query: 363 SFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGS 422
           S N  +    +      L +L L +N    +I +        L  + L +N  + +   +
Sbjct: 309 SHNHLLHVERNQPQFDRLENLYLDHN----SIVTLKLSTHHTLKNLTLSHNDWDCNSLRA 364

Query: 423 LFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILI 482
           LF    + +  + +      I           ++     +RL   I ++    +  +   
Sbjct: 365 LF--RNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQG 422

Query: 483 LSSNKLNGTVQLAAIQRLHNLA--------KLELSYNNLTVNAGSDSSFPSQVRTLRLAS 534
             S         +    +            +LE   N L       ++   Q   L L  
Sbjct: 423 RCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQL-LQG 481

Query: 535 CKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRP--- 591
               +  NL+      +     +    ++   + E     L+          + Q+    
Sbjct: 482 LHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETED 541

Query: 592 FSISDLSPITVLDLHSNQL 610
               +++    LD    + 
Sbjct: 542 LEQENIALEKQLDNKRAKQ 560

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  104 bits (260), Expect = 4e-23
 Identities = 70/331 (21%), Positives = 117/331 (35%), Gaps = 50/331 (15%)

Query: 475 LRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLT-VNAGSDSSFPSQVRTLRLA 533
             ++ I + + +   G   +     L+N   +    + +  + A    SF  QV  L L 
Sbjct: 29  FYDVHIDMQTQDVYFGFEDI----TLNNQKIVTFKNSTMRKLPAALLDSFR-QVELLNLN 83

Query: 534 SCKLRVIPN--LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRP 591
             ++  I          +  L +  N I   +P  V++     L  L L  N LSSL   
Sbjct: 84  DLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQ-NVPLLTVLVLERNDLSSLP-R 140

Query: 592 FSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSL 651
               +   +T L + +N L                        I DD     +      L
Sbjct: 141 GIFHNTPKLTTLSMSNNNL----------------------ERIEDDTFQATTSLQNLQL 178

Query: 652 SNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSV 711
           S+N +T V    +     L   ++S N LS       + +   +  L+   NS++    V
Sbjct: 179 SSNRLTHVDLSLIPS---LFHANVSYNLLS------TLAIPIAVEELDASHNSIN---VV 226

Query: 712 TFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLV 771
             P N  L  L L  N L  T    L N   LV +DL  N++          +  L  L 
Sbjct: 227 RGPVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284

Query: 772 LRSNSFYGNISCRENGDSWPKLQIVDLASNN 802
           + +N     ++    G   P L+++DL+ N+
Sbjct: 285 ISNNRL-VALN--LYGQPIPTLKVLDLSHNH 312

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 95.4 bits (237), Expect = 2e-20
 Identities = 65/385 (16%), Positives = 124/385 (32%), Gaps = 52/385 (13%)

Query: 579 NLSHNLLSSLQRPFSISDLSP--ITVLDLHSNQLQGNIPYPPPKAVL-----VDYSNNSF 631
              +N+         I           D+H +    ++ +      L     V + N++ 
Sbjct: 4   QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM 63

Query: 632 TSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKM 691
              +P  + +        +L++  I  +       A  +  L +  N +   +P  + + 
Sbjct: 64  RK-LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQN 121

Query: 692 SEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNN 751
             +L VL L  N LS      F     L TL ++ N L      +     +L  L L +N
Sbjct: 122 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 181

Query: 752 KIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKC 811
           ++       L  I SL    +  N                 ++ +D + N+         
Sbjct: 182 RLT-HVD--LSLIPSLFHANVSYNLL-------STLAIPIAVEELDASHNSI-------- 223

Query: 812 ITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDF 871
                          +  +      L I    + +   +T     +    +      +D 
Sbjct: 224 ---------------NVVRGPVNVELTILKLQHNN---LTDTAWLLNYPGL----VEVDL 261

Query: 872 SRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQ 931
           S N  +  +     +++ L  L +S N L   +      +  L+ LDLS NHL   +   
Sbjct: 262 SYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERN 319

Query: 932 LANLTFLSFLNLSHNNLVGKIPIST 956
                 L  L L HN++V  + +ST
Sbjct: 320 QPQFDRLENLYLDHNSIV-TLKLST 343

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.2 bits (117), Expect = 7e-06
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 880 IPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLS 939
           +      + +L  L+LS N L   +        +LE+L L  N +     ++L+    L 
Sbjct: 293 LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIV---TLKLSTHHTLK 348

Query: 940 FLNLSHNNL 948
            L LSHN+ 
Sbjct: 349 NLTLSHNDW 357

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  121 bits (306), Expect = 3e-29
 Identities = 83/422 (19%), Positives = 143/422 (33%), Gaps = 54/422 (12%)

Query: 371 IPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLF-SLPML 429
           +P L    ++ ++DLS N++   ++ T +  L +L ++ +   +    I  + F  L  L
Sbjct: 25  VPEL--PAHVNYVDLSLNSI-AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSL 81

Query: 430 QQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFD-LRNLKILILSSNKL 488
             L                          L  N+    +    F+ L NL++L L+   L
Sbjct: 82  IIL-------------------------KLDYNQFLQ-LETGAFNGLANLEVLTLTQCNL 115

Query: 489 NGT-VQLAAIQRLHNLAKLELSYNNLT--VNAGSDSSFPSQVRTLRLASCKLRVIPNLK- 544
           +G  +     + L +L  L L  NN+     A    +       L L   K++ I     
Sbjct: 116 DGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR-FHVLDLTFNKVKSICEEDL 174

Query: 545 ---NQSKLFNLDLSDNQISGEIPNWVWEI------GNVSLQYLNLSHNLLSSLQRPFSIS 595
                     L LS   +      W+          N S+  L+LS N            
Sbjct: 175 LNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM-AKRFF 233

Query: 596 DLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNS 655
           D    T +         N+          D  N +F        G   S      LS + 
Sbjct: 234 DAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK-------GLEASGVKTCDLSKSK 286

Query: 656 ITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPG 715
           I  ++         L  L L++N+++         ++  L  LNL  N L    S  F  
Sbjct: 287 IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH-LLKLNLSQNFLGSIDSRMFEN 345

Query: 716 NCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSN 775
              L  LDL+ N +     +S     NL  L L  N+++       + ++SL+ + L +N
Sbjct: 346 LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

Query: 776 SF 777
            +
Sbjct: 406 PW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  117 bits (296), Expect = 4e-28
 Identities = 77/384 (20%), Positives = 139/384 (36%), Gaps = 38/384 (9%)

Query: 260 NLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPD-FPKNSSLRTLMLSNTN 318
           ++  + LS + +         ++  L+ L +   +       + F   SSL  L L    
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 319 FSGVLPDSIGNLKNLSRLDLALCYFDGSI--PTSLANLTQLVYLDLSFNKF--VGPIPSL 374
           F  +   +   L NL  L L  C  DG++        LT L  L L  N    + P    
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 375 HMSKNLTHLDLSYN---ALPGAI------SSTDWEHLSNLVYVDLRYNSLNGSIPGSLFS 425
              +    LDL++N   ++                 LS++   D+    L     G+ F 
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK 210

Query: 426 LPMLQQLQLAENKFGGLIPE--FSNASSSALDTI----------DLSGNRLEGPIPMSIF 473
              +  L L+ N F   + +  F   + + + ++                 + P   +  
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270

Query: 474 DLR--NLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFP--SQVRT 529
            L    +K   LS +K+   +  +      +L +L L+ N +      D++F   + +  
Sbjct: 271 GLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN--KIDDNAFWGLTHLLK 327

Query: 530 LRLASCKLRVIPN--LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSS 587
           L L+   L  I +   +N  KL  LDLS N I   + +  +  G  +L+ L L  N L S
Sbjct: 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFL-GLPNLKELALDTNQLKS 385

Query: 588 LQRPFSISDLSPITVLDLHSNQLQ 611
           +        L+ +  + LH+N   
Sbjct: 386 VP-DGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  109 bits (273), Expect = 3e-25
 Identities = 91/437 (20%), Positives = 156/437 (35%), Gaps = 68/437 (15%)

Query: 81  LDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFA 140
           +DLS  SI+  ++ +S    L+ LQ L +           +    L++L  L L    F 
Sbjct: 35  VDLSLNSIAE-LNETS-FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL 92

Query: 141 GQIPIQV-SGMTRLVTLDLSSLNRFGAPLKLENPNL-SGLLQNLAELRELYLDGANISAP 198
            Q+     +G+  L  L L+          L+   L     + L  L  L L   NI   
Sbjct: 93  -QLETGAFNGLANLEVLTLTQ-C------NLDGAVLSGNFFKPLTSLEMLVLRDNNI--- 141

Query: 199 GIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADF 258
                     + P                      ++   V+ L  N + S + E   D 
Sbjct: 142 --------KKIQP----------------ASFFLNMRRFHVLDLTFNKVKS-ICE--EDL 174

Query: 259 FNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTN 318
            N      +  RL            ++   D++   L      +  KN+S+ TL LS   
Sbjct: 175 LNFQGKHFTLLRL-----------SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG 223

Query: 319 FSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSK 378
           F   +     +    +++   +     ++ +S        + D     F G   S     
Sbjct: 224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGSS---FGHTNFKDPDNFTFKGLEAS----- 275

Query: 379 NLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLF-SLPMLQQLQLAEN 437
            +   DLS + +  A+  + + H ++L  + L  N +N  I  + F  L  L +L L++N
Sbjct: 276 GVKTCDLSKSKI-FALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQN 333

Query: 438 KFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFD-LRNLKILILSSNKLNGTVQLAA 496
             G +       +   L+ +DLS N +   +    F  L NLK L L +N+L  +V    
Sbjct: 334 FLGSI-DSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDTNQLK-SVPDGI 390

Query: 497 IQRLHNLAKLELSYNNL 513
             RL +L K+ L  N  
Sbjct: 391 FDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  105 bits (264), Expect = 5e-24
 Identities = 86/388 (22%), Positives = 143/388 (36%), Gaps = 50/388 (12%)

Query: 454 LDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNL 513
           ++ +DLS N +      S   L++L+ L +        ++    + L +L  L+L YN  
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 514 TVNAGSDSSFP--SQVRTLRLASCKLR--VIPN--LKNQSKLFNLDLSDNQISGEIPNWV 567
                   +F   + +  L L  C L   V+     K  + L  L L DN I    P   
Sbjct: 92  L--QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 568 WEIGNVSLQYLNLSHNLLSSL---------QRPFSISDLSPITVLDLHSNQLQGNIPYPP 618
           +         L+L+ N + S+          + F++  LS IT+ D++   L       P
Sbjct: 150 FL-NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208

Query: 619 PKAVLVDY---SNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLC---------- 665
            K   +     S N F  S+     + ++ T   SL  ++   +                
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268

Query: 666 ----RAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHT 721
                A  +   DLSK+K+   +   +      L  L L  N ++      F G   L  
Sbjct: 269 FKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK 327

Query: 722 LDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIR----DTFPWWLENISSLRVLVLRSNSF 777
           L+L+ N LG    +   N   L VLDL  N IR     +F      + +L+ L L +N  
Sbjct: 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF----LGLPNLKELALDTN-- 381

Query: 778 YGNISCRENG--DSWPKLQIVDLASNNF 803
              +    +G  D    LQ + L +N +
Sbjct: 382 --QLKSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 84.8 bits (210), Expect = 3e-17
 Identities = 84/436 (19%), Positives = 134/436 (30%), Gaps = 88/436 (20%)

Query: 522 SFPSQVRTLRLASCKLRVIPN--LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLN 579
             P+ V  + L+   +  +          L  L +        I N  +  G  SL  L 
Sbjct: 27  ELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFR-GLSSLIILK 85

Query: 580 LSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDI 639
           L +N    L+   + + L+ + VL L    L G                    + +  + 
Sbjct: 86  LDYNQFLQLE-TGAFNGLANLEVLTLTQCNLDG--------------------AVLSGNF 124

Query: 640 GNFVSFT--LFFSLSNNSITGVIPETL-CRAKYLLVLDLSKNKLSGKMPTCLIKMSEI-L 695
             F   T      L +N+I  + P +     +   VLDL+ NK+       L+       
Sbjct: 125 --FKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHF 182

Query: 696 GVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRD 755
            +L L   +L                 D+N   LG     +     ++  LDL  N  ++
Sbjct: 183 TLLRLSSITL----------------QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE 226

Query: 756 TFPWWLEN-ISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITS 814
           +      + I+  ++  L  ++ Y   S              D  +  F G         
Sbjct: 227 SMAKRFFDAIAGTKIQSLILSNSYNMGSSF------GHTNFKDPDNFTFKG--------- 271

Query: 815 WKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRN 874
                       S  K       KI               L   +    +    +  ++N
Sbjct: 272 ---------LEASGVKTCDLSKSKIFA-------------LLKSVFSHFTDLEQLTLAQN 309

Query: 875 NFDGPIPEEI-GRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQL- 932
             +  I +     L  L  LNLSQN L         NL +LE LDLS NH+   +  Q  
Sbjct: 310 EIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSF 367

Query: 933 ANLTFLSFLNLSHNNL 948
             L  L  L L  N L
Sbjct: 368 LGLPNLKELALDTNQL 383

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 64.0 bits (156), Expect = 1e-10
 Identities = 86/448 (19%), Positives = 136/448 (30%), Gaps = 92/448 (20%)

Query: 534 SCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFS 593
           +  L  +P L        +DLS N I+ E+    +      LQ+L +       + R  +
Sbjct: 19  NRGLHQVPELPAHVN--YVDLSLNSIA-ELNETSFS-RLQDLQFLKVEQQTPGLVIRNNT 74

Query: 594 ISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSN 653
              LS + +L L  NQ                         +            F  L+N
Sbjct: 75  FRGLSSLIILKLDYNQFL----------------------QLETGA--------FNGLAN 104

Query: 654 NSITGVIPETLCRAKYLLVLDLSKNKLSGKM--PTCLIKMSEILGVLNLRGNSLSG-TLS 710
                           L VL L++  L G +        ++  L +L LR N++     +
Sbjct: 105 ----------------LEVLTLTQCNLDGAVLSGNFFKPLTS-LEMLVLRDNNIKKIQPA 147

Query: 711 VTFPGNCGLHTLDLNGNQLGGTVPKSLANC--RNLVVLDLGNNKIRDTFPWWLENI---- 764
             F      H LDL  N++     + L N   ++  +L L +  ++D   +WL       
Sbjct: 148 SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207

Query: 765 ----SSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLAS------NNFGGRVPQKCITS 814
               +S+  L L  N              +  +    + S       N G          
Sbjct: 208 PFKNTSITTLDLSGN----GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263

Query: 815 WKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEM------ELVKI------ 862
                    EA S  K       KI       +V      LE       E+ KI      
Sbjct: 264 PDNFTFKGLEA-SGVKTCDLSKSKIFAL--LKSVFSHFTDLEQLTLAQNEINKIDDNAFW 320

Query: 863 -LSIFTSIDFSRNNFDGPIPEEI-GRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLS 920
            L+    ++ S+N     I   +   L  L  L+LS N +      +   L  L+ L L 
Sbjct: 321 GLTHLLKLNLSQNFLGS-IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALD 379

Query: 921 MNHLSGQIPIQLANLTFLSFLNLSHNNL 948
            N L          LT L  + L  N  
Sbjct: 380 TNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  118 bits (297), Expect = 3e-29
 Identities = 64/282 (22%), Positives = 112/282 (39%), Gaps = 17/282 (6%)

Query: 286 ETLDLSGNSLLQGSLP-DFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALC--Y 342
             +  +   L   S+P   P  SS   L L +     +       L  L++L L+     
Sbjct: 10  TEIRCNSKGLT--SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS 65

Query: 343 FDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHL 402
           F G    S    T L YLDLSFN  +    +    + L HLD  ++ L      + +  L
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125

Query: 403 SNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGN 462
            NL+Y+D+ +     +  G    L  L+ L++A N F              L  +DLS  
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185

Query: 463 RLEGPIPMSIFD-LRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLT-VNAGSD 520
           +LE  +  + F+ L +L++L +S N    ++     + L++L  L+ S N++        
Sbjct: 186 QLEQ-LSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243

Query: 521 SSFPSQVRTLRLA------SCKLRVIPNLKNQSKLFNLDLSD 556
             FPS +  L L       +C+ +         +   +++  
Sbjct: 244 QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVER 285

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 95.8 bits (239), Expect = 1e-21
 Identities = 56/262 (21%), Positives = 90/262 (34%), Gaps = 30/262 (11%)

Query: 521 SSFPSQVRTLRLASCKLRVIPN--LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYL 578
           +  PS    L L S KL+ +P+      ++L  L LS N +S +      + G  SL+YL
Sbjct: 24  TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83

Query: 579 NLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDD 638
           +LS N + ++   F    L  +  LD   + L                        + + 
Sbjct: 84  DLSFNGVITMSSNFL--GLEQLEHLDFQHSNL----------------------KQMSEF 119

Query: 639 IGNFVSFT--LFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILG 696
              F+S    ++  +S+                L VL ++ N         +      L 
Sbjct: 120 -SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 178

Query: 697 VLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDT 756
            L+L    L       F     L  L+++ N              +L VLD   N I  +
Sbjct: 179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238

Query: 757 FPWWLENI-SSLRVLVLRSNSF 777
               L++  SSL  L L  N F
Sbjct: 239 KKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 88.5 bits (220), Expect = 4e-19
 Identities = 58/268 (21%), Positives = 99/268 (36%), Gaps = 20/268 (7%)

Query: 128 NLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRE 187
           + T +  ++ G    +P  +   +    L+L S N+      L      G+   L +L +
Sbjct: 8   SGTEIRCNSKGLT-SVPTGIP--SSATRLELES-NKL---QSLP----HGVFDKLTQLTK 56

Query: 188 LYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDL 247
           L L    +S  G    Q+       L+ L LS   +   +  +   L+ L  +    ++L
Sbjct: 57  LSLSSNGLSFKGCC-SQSDFGT-TSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNL 113

Query: 248 LS-PVPEFLADFFNLTSLRLSHSRLNGTFPEKILQ-VHTLETLDLSGNSLLQGSLPDFPK 305
                        NL  L +SH+         I   + +LE L ++GNS  +  LPD   
Sbjct: 114 KQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 172

Query: 306 N-SSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSF 364
              +L  L LS      + P +  +L +L  L+++   F          L  L  LD S 
Sbjct: 173 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 232

Query: 365 NKFVGPIPSL--HMSKNLTHLDLSYNAL 390
           N  +        H   +L  L+L+ N  
Sbjct: 233 NHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 80.8 bits (200), Expect = 1e-16
 Identities = 55/241 (22%), Positives = 86/241 (35%), Gaps = 21/241 (8%)

Query: 104 LQSLNLAFNMFNATEIPSG-LGSLTNLTNLNLSN--AGFAGQIPIQVSGMTRLVTLDLSS 160
              L L  N      +P G    LT LT L+LS+    F G       G T L  LDLS 
Sbjct: 30  ATRLELESNKL--QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 161 LNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSS 220
            N            +S     L +L  L    +N+    +       SL   L  L +S 
Sbjct: 88  -NGVI--------TMSSNFLGLEQLEHLDFQHSNLKQ--MSEFSVFLSL-RNLIYLDISH 135

Query: 221 CYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPE-FLADFFNLTSLRLSHSRLNGTFPEKI 279
            +     +     L SL V+++  N            +  NLT L LS  +L        
Sbjct: 136 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTA 194

Query: 280 LQ-VHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNL-KNLSRLD 337
              + +L+ L++S N+        +   +SL+ L  S  +        + +   +L+ L+
Sbjct: 195 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 254

Query: 338 L 338
           L
Sbjct: 255 L 255

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 79.3 bits (196), Expect = 4e-16
 Identities = 49/218 (22%), Positives = 79/218 (36%), Gaps = 17/218 (7%)

Query: 81  LDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFA 140
           L LS   +S     S   F    L+ L+L+FN      + S    L  L +L+  ++   
Sbjct: 57  LSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN--GVITMSSNFLGLEQLEHLDFQHSNLK 114

Query: 141 GQIPIQV-SGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPG 199
                 V   +  L+ LD+S  +             +G+   L+ L  L + G N     
Sbjct: 115 QMSEFSVFLSLRNLIYLDISHTH-------TRVAF-NGIFNGLSSLEVLKMAG-NSFQEN 165

Query: 200 IEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFF 259
                  + L   L  L LS C L      +   L SL V+ +  N+  S          
Sbjct: 166 FLP-DIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223

Query: 260 NLTSLRLSHSRLNGTFPEKILQ--VHTLETLDLSGNSL 295
           +L  L  S + +  T  ++ LQ    +L  L+L+ N  
Sbjct: 224 SLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 77.0 bits (190), Expect = 3e-15
 Identities = 50/234 (21%), Positives = 74/234 (31%), Gaps = 33/234 (14%)

Query: 574 SLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTS 633
           S   L L  N L SL        L+ +T L L SN L                      S
Sbjct: 29  SATRLELESNKLQSLP-HGVFDKLTQLTKLSLSSNGL----------------------S 65

Query: 634 SIPDDIGNFVSFT--LFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKM 691
                  +    T   +  LS N +   +       + L  LD   + L       +   
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 124

Query: 692 SEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTV-PKSLANCRNLVVLDLGN 750
              L  L++         +  F G   L  L + GN       P      RNL  LDL  
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184

Query: 751 NKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENG--DSWPKLQIVDLASNN 802
            ++    P    ++SSL+VL +  N    N    +         LQ++D + N+
Sbjct: 185 CQLEQLSPTAFNSLSSLQVLNMSHN----NFFSLDTFPYKCLNSLQVLDYSLNH 234

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 74.7 bits (184), Expect = 2e-14
 Identities = 74/329 (22%), Positives = 109/329 (33%), Gaps = 84/329 (25%)

Query: 624 VDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGK 683
           +  ++   TS +P  I    S      L +N +  +      +   L  L LS N LS K
Sbjct: 12  IRCNSKGLTS-VPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67

Query: 684 --MPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSL-ANC 740
                     +  L  L+L  N +  T+S  F G   L  LD   + L      S+  + 
Sbjct: 68  GCCSQSDFGTTS-LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125

Query: 741 RNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLAS 800
           RNL+ LD+ +   R  F      +SSL VL                           +A 
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVL--------------------------KMAG 159

Query: 801 NNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELV 860
           N+F                      Q NF    F  L+                    L 
Sbjct: 160 NSF----------------------QENFLPDIFTELR-------------------NL- 177

Query: 861 KILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLS 920
                 T +D S+   +   P     L SL  LN+S N            L  L+ LD S
Sbjct: 178 ------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 231

Query: 921 MNHLSGQIPIQLANL-TFLSFLNLSHNNL 948
           +NH+      +L +  + L+FLNL+ N+ 
Sbjct: 232 LNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 52/234 (22%), Positives = 87/234 (37%), Gaps = 31/234 (13%)

Query: 717 CGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNS 776
           C    +  N   L  +VP  +    +   L+L +NK++       + ++ L  L L SN 
Sbjct: 7   CSGTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG 63

Query: 777 FYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEF 836
                 C ++      L+ +DL+ N          + +            SNF     E 
Sbjct: 64  LSFKGCCSQSDFGTTSLKYLDLSFNG---------VITM----------SSNFL--GLEQ 102

Query: 837 LKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEI-GRLKSLHGLNL 895
           L+  DF + +   ++   + + L  +      +D S  +        I   L SL  L +
Sbjct: 103 LEHLDFQHSNLKQMSEFSVFLSLRNL----IYLDISHTHTRV-AFNGIFNGLSSLEVLKM 157

Query: 896 SQN-ALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNL 948
           + N      +P     L+ L  LDLS   L    P    +L+ L  LN+SHNN 
Sbjct: 158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 48.1 bits (115), Expect = 8e-06
 Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 2/88 (2%)

Query: 867 TSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTG-PIPSAIGNLQQLESLDLSMNHLS 925
             +D S N     +      L+ L  L+   + L      S   +L+ L  LD+S  H  
Sbjct: 81  KYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 139

Query: 926 GQIPIQLANLTFLSFLNLSHNNLVGKIP 953
                    L+ L  L ++ N+      
Sbjct: 140 VAFNGIFNGLSSLEVLKMAGNSFQENFL 167

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  113 bits (285), Expect = 2e-27
 Identities = 78/315 (24%), Positives = 125/315 (39%), Gaps = 37/315 (11%)

Query: 371 IPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQ 430
           +P   +S + T LDL  N +   +   D++ L +L  + L  N ++     +   L  LQ
Sbjct: 48  VPK-EISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ 105

Query: 431 QLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIF-DLRNLKILILSSNKL- 488
           +L +++N     + E      S+L  + +  NR+   +P  +F  LRN+  + +  N L 
Sbjct: 106 KLYISKNH----LVEIPPNLPSSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLE 160

Query: 489 NGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPN--LKNQ 546
           N   +  A   L  L  L +S   LT   G     P  +  L L   K++ I    L   
Sbjct: 161 NSGFEPGAFDGL-KLNYLRISEAKLT---GIPKDLPETLNELHLDHNKIQAIELEDLLRY 216

Query: 547 SKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLH 606
           SKL+ L L  NQI   I N        +L+ L+L +N LS +  P  + DL  + V+ LH
Sbjct: 217 SKLYRLGLGHNQIR-MIENGSLS-FLPTLRELHLDNNKLSRV--PAGLPDLKLLQVVYLH 272

Query: 607 SNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSIT--GVIPETL 664
           +N +   +              N F          + +     SL NN +    V P T 
Sbjct: 273 TNNIT-KVG------------VNDFCPVGFGVKRAYYNGI---SLFNNPVPYWEVQPATF 316

Query: 665 CRAKYLLVLDLSKNK 679
                 L +     K
Sbjct: 317 RCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  105 bits (264), Expect = 1e-24
 Identities = 71/381 (18%), Positives = 117/381 (30%), Gaps = 90/381 (23%)

Query: 379 NLTHLDLSYNAL---PGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLA 435
           +L  +  S   L   P  IS        +   +DL+ N ++         L  L  L L 
Sbjct: 34  HLRVVQCSDLGLKAVPKEISP-------DTTLLDLQNNDISELRKDDFKGLQHLYALVLV 86

Query: 436 ENKFGGLIPE-FSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQL 494
            NK   +  + FS      L  + +S N L   IP ++    +L  L +  N++   V  
Sbjct: 87  NNKISKIHEKAFSPLRK--LQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIR-KVPK 140

Query: 495 AAIQRLHNLAKLELSYNNLTVNAGSDSSF-PSQVRTLRLASCKLRVIPNLKNQSKLFNLD 553
                L N+  +E+  N L  +     +F   ++  LR++  KL  IP       L  L 
Sbjct: 141 GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPK-DLPETLNELH 199

Query: 554 LSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGN 613
           L  N+I   I           L  L L HN +  ++   S+S L  +  L L +N+L   
Sbjct: 200 LDHNKIQ-AIELEDLL-RYSKLYRLGLGHNQIRMIE-NGSLSFLPTLRELHLDNNKL--- 253

Query: 614 IPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVL 673
                              S +P              L                  L V+
Sbjct: 254 -------------------SRVPAG---------LPDLKL----------------LQVV 269

Query: 674 DLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTV 733
            L  N ++                  +  N                + + L  N +    
Sbjct: 270 YLHTNNIT-----------------KVGVNDFCPVGFGVKRAY--YNGISLFNNPVPYWE 310

Query: 734 --PKSLANCRNLVVLDLGNNK 752
             P +     + + +  GN K
Sbjct: 311 VQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 97.8 bits (244), Expect = 4e-22
 Identities = 63/359 (17%), Positives = 116/359 (32%), Gaps = 74/359 (20%)

Query: 454 LDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNL 513
           L  +  S   L+  +P  I    +  +L L +N ++  ++    + L +L  L L  N +
Sbjct: 35  LRVVQCSDLGLKA-VPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKI 90

Query: 514 TVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNV 573
           +           +                     KL  L +S N +  EIP  +      
Sbjct: 91  S-------KIHEKA---------------FSPLRKLQKLYISKNHLV-EIPPNLPS---- 123

Query: 574 SLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTS 633
           SL  L +  N +  +      S L  +  +++  N L+                     S
Sbjct: 124 SLVELRIHDNRIRKVP-KGVFSGLRNMNCIEMGGNPLE--------------------NS 162

Query: 634 SIPDDIGNFVSFTLFF-SLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMS 692
                   F    L +  +S   +TG+  +     + L  L L  NK+       L++ S
Sbjct: 163 GFEPGA--FDGLKLNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYS 217

Query: 693 EILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNK 752
           + L  L L  N +    + +      L  L L+ N+L   VP  L + + L V+ L  N 
Sbjct: 218 K-LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN 275

Query: 753 IR----DTFP--WWLENISSLRVLVLRSNSFYGNISCRENGDSW----PKLQIVDLASN 801
           I     + F    +    +    + L +N     +   E   +          +   + 
Sbjct: 276 ITKVGVNDFCPVGFGVKRAYYNGISLFNN----PVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 90.5 bits (225), Expect = 1e-19
 Identities = 56/308 (18%), Positives = 106/308 (34%), Gaps = 34/308 (11%)

Query: 117 TEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLS 176
             +P  +    + T L+L N   +        G+  L  L L + N+     K+      
Sbjct: 46  KAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVN-NKIS---KIHE---- 95

Query: 177 GLLQNLAELRELYLDGANISAPGIEWCQALSSLVPK-LQVLSLSSCYLSGPIHP-SLAKL 234
                L +L++LY+   ++          +   +P  L  L +    +   +     + L
Sbjct: 96  KAFSPLRKLQKLYISKNHLVE--------IPPNLPSSLVELRIHDNRIRK-VPKGVFSGL 146

Query: 235 QSLSVIRLDQNDL-LSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGN 293
           ++++ I +  N L  S       D   L  LR+S ++L    P+ + +  TL  L L  N
Sbjct: 147 RNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLPE--TLNELHLDHN 203

Query: 294 SLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLAN 353
            +    L D  + S L  L L +     +   S+  L  L  L L        +P  L +
Sbjct: 204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262

Query: 354 LTQLVYLDLSFNKFV-------GPIPSLHMSKNLTHLDLSYNALP-GAISSTDWEHLSNL 405
           L  L  + L  N           P+           + L  N +P   +    +  +++ 
Sbjct: 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDR 322

Query: 406 VYVDLRYN 413
           + +     
Sbjct: 323 LAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 81.2 bits (201), Expect = 2e-16
 Identities = 57/255 (22%), Positives = 92/255 (36%), Gaps = 40/255 (15%)

Query: 552 LDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQ 611
           LDL +N IS E+    ++ G   L  L L +N +S +    + S L  +  L +  N L 
Sbjct: 59  LDLQNNDIS-ELRKDDFK-GLQHLYALVLVNNKISKIH-EKAFSPLRKLQKLYISKNHL- 114

Query: 612 GNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLL 671
                                  IP ++    S      + +N I  V        + + 
Sbjct: 115 ---------------------VEIPPNL--PSSLVEL-RIHDNRIRKVPKGVFSGLRNMN 150

Query: 672 VLDLSKNKLSGKM--PTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQL 729
            +++  N L      P     +   L  L +    L+G           L+ L L+ N++
Sbjct: 151 CIEMGGNPLENSGFEPGAFDGLK--LNYLRISEAKLTGIPKDLPET---LNELHLDHNKI 205

Query: 730 GGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENG-D 788
                + L     L  L LG+N+IR      L  + +LR L L +N     +S    G  
Sbjct: 206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN----KLSRVPAGLP 261

Query: 789 SWPKLQIVDLASNNF 803
               LQ+V L +NN 
Sbjct: 262 DLKLLQVVYLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 68.9 bits (169), Expect = 2e-12
 Identities = 61/326 (18%), Positives = 104/326 (31%), Gaps = 88/326 (26%)

Query: 624 VDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGK 683
           V  S+    + +P +I      T    L NN I+ +  +     ++L  L L  NK+S  
Sbjct: 38  VQCSDLGLKA-VPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-- 91

Query: 684 MPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNL 743
                           +   + S            L  L ++ N L   +P +L    +L
Sbjct: 92  ---------------KIHEKAFSPLRK--------LQKLYISKNHLV-EIPPNLP--SSL 125

Query: 744 VVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNF 803
           V L + +N+IR                 +    F G             +  +++  N  
Sbjct: 126 VELRIHDNRIR----------------KVPKGVFSGL----------RNMNCIEMGGN-- 157

Query: 804 GGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKIL 863
                   + +       E  A   F  +   +L+I++      +T   K L        
Sbjct: 158 -------PLEN----SGFEPGA---FDGLKLNYLRISE----AKLTGIPKDL-------P 192

Query: 864 SIFTSIDFSRNNFDGPIPEEI-GRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMN 922
                +    N     I  E   R   L+ L L  N +      ++  L  L  L L  N
Sbjct: 193 ETLNELHLDHNKIQA-IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN 251

Query: 923 HLSGQIPIQLANLTFLSFLNLSHNNL 948
            LS ++P  L +L  L  + L  NN+
Sbjct: 252 KLS-RVPAGLPDLKLLQVVYLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 57.3 bits (139), Expect = 9e-09
 Identities = 46/246 (18%), Positives = 75/246 (30%), Gaps = 54/246 (21%)

Query: 81  LDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFA 140
           L + +  I   +        L+ +  + +  N    +    G      L  L +S A   
Sbjct: 128 LRIHDNRIRK-VPKGV-FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA--- 182

Query: 141 GQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNL-AELRELYLDGANISAPG 199
                                             L+G+ ++L   L EL+LD   I A  
Sbjct: 183 ---------------------------------KLTGIPKDLPETLNELHLDHNKIQA-- 207

Query: 200 IEWCQALSSLVPKLQVLSLSSCYLSGPIHP-SLAKLQSLSVIRLDQNDLLSPVPEFLADF 258
           IE  + L     KL  L L    +   I   SL+ L +L  + LD N L   VP  L D 
Sbjct: 208 IE-LEDLLRY-SKLYRLGLGHNQIRM-IENGSLSFLPTLRELHLDNNKLSR-VPAGLPDL 263

Query: 259 FNLTSLRLSHSRL----NGTFP--EKILQVHTLETLDLSGNSLLQGSLPD--FPKNSSLR 310
             L  + L  + +       F      ++      + L  N +    +    F   +   
Sbjct: 264 KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL 323

Query: 311 TLMLSN 316
            +   N
Sbjct: 324 AIQFGN 329

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  115 bits (291), Expect = 2e-27
 Identities = 77/416 (18%), Positives = 144/416 (34%), Gaps = 52/416 (12%)

Query: 260 NLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNF 319
           N  S   +   +  T      Q+ TL +LD   +S+    +    K + L  L+ ++ N 
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT--DMTGIEKLTGLTKLICTSNNI 76

Query: 320 SGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKN 379
           + +    +    NL+ L         ++   +  LT+L YL+   NK    +        
Sbjct: 77  TTL---DLSQNTNLTYLACDSNKL-TNLD--VTPLTKLTYLNCDTNKL-TKLDVSQN-PL 128

Query: 380 LTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKF 439
           LT+L+ + N     ++  D  H + L  +D   N     +   +     L  L  + NK 
Sbjct: 129 LTYLNCARN----TLTEIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKI 182

Query: 440 GGL-----------------IPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILI 482
             L                 I +     +  L  +D S N+L     + +  L  L    
Sbjct: 183 TELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE---IDVTPLTQLTYFD 239

Query: 483 LSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPN 542
            S N L        +  L  L  L     +L      D +  +Q+   +   C+     +
Sbjct: 240 CSVNPLTEL----DVSTLSKLTTLHCIQTDLLEI---DLTHNTQLIYFQAEGCRKIKELD 292

Query: 543 LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITV 602
           + + ++L+ LD     I+ E+        N  L YL L++  L+ L     +S  + +  
Sbjct: 293 VTHNTQLYLLDCQAAGIT-ELDLS----QNPKLVYLYLNNTELTEL----DVSHNTKLKS 343

Query: 603 LDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITG 658
           L   +  +Q         A+  ++     T ++P +     S T+  S       G
Sbjct: 344 LSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFG 399

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  112 bits (282), Expect = 3e-26
 Identities = 84/467 (17%), Positives = 140/467 (29%), Gaps = 72/467 (15%)

Query: 315 SNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSL 374
              +F+   PD      N +    A      +   S   L  L  LD   +     +  +
Sbjct: 7   QTQSFNDWFPDD-----NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD-MTGI 60

Query: 375 HMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQL 434
                LT L  + N     I++ D    +NL Y+    N L  ++  +   L  L  L  
Sbjct: 61  EKLTGLTKLICTSN----NITTLDLSQNTNLTYLACDSNKLT-NLDVT--PLTKLTYLNC 113

Query: 435 AENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQL 494
             NK    + +   + +  L  ++ + N L     + +     L  L    NK       
Sbjct: 114 DTNK----LTKLDVSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKI---TK 163

Query: 495 AAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDL 554
             +     L  L+ S+N +T     D S    +  L   +  +  +  L    +L  LD 
Sbjct: 164 LDVTPQTQLTTLDCSFNKIT---ELDVSQNKLLNRLNCDTNNITKLD-LNQNIQLTFLDC 219

Query: 555 SDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNI 614
           S N+++ EI           L Y + S N L+ L     +S LS +T L      L    
Sbjct: 220 SSNKLT-EID----VTPLTQLTYFDCSVNPLTEL----DVSTLSKLTTLHCIQTDL---- 266

Query: 615 PYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLD 674
                               I  D+ +      F +     I       +     L +LD
Sbjct: 267 ------------------LEI--DLTHNTQLIYFQAEGCRKIK---ELDVTHNTQLYLLD 303

Query: 675 LSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVP 734
                ++    +   K    L  L L    L+  L V+      L +L      +     
Sbjct: 304 CQAAGITELDLSQNPK----LVYLYLNNTELT-ELDVSHNTK--LKSLSCVNAHI--QDF 354

Query: 735 KSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNI 781
            S+     L        +        L N S    +       +GN 
Sbjct: 355 SSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNP 401

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  102 bits (257), Expect = 5e-23
 Identities = 82/494 (16%), Positives = 160/494 (32%), Gaps = 84/494 (17%)

Query: 128 NLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGL--LQNLAEL 185
           N  +   +         I    +  L +LD  +             +++ +  ++ L  L
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNS------------SITDMTGIEKLTGL 66

Query: 186 RELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQN 245
            +L     NI+   +       S    L  L+  S  L+   +  +  L  L+ +  D N
Sbjct: 67  TKLICTSNNITTLDL-------SQNTNLTYLACDSNKLT---NLDVTPLTKLTYLNCDTN 116

Query: 246 DLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPK 305
             L+ +   ++    LT L  + + L       +     L  LD   N  +  +  D   
Sbjct: 117 K-LTKLD--VSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKI--TKLDVTP 168

Query: 306 NSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFN 365
            + L TL  S    + +    +   K L+RL+               +   +  LDL+ N
Sbjct: 169 QTQLTTLDCSFNKITEL---DVSQNKLLNRLNC--------------DTNNITKLDLNQN 211

Query: 366 KFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFS 425
                         LT LD S N     ++  D   L+ L Y D   N L   +  S  +
Sbjct: 212 ------------IQLTFLDCSSN----KLTEIDVTPLTQLTYFDCSVNPLT-ELDVS--T 252

Query: 426 LPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSS 485
           L  L  L   +      + E     ++ L      G R    + ++      L +L   +
Sbjct: 253 LSKLTTLHCIQTD----LLEIDLTHNTQLIYFQAEGCRKIKELDVT--HNTQLYLLDCQA 306

Query: 486 NKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKN 545
             +        + +   L  L L+   LT     D S  +++++L   +  ++   ++  
Sbjct: 307 AGITE----LDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQDFSSVGK 359

Query: 546 QSKLFNLDLSDNQISGEIPNWV---WEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITV 602
              L N   ++ Q        +        VS   L+   N ++       + D +  T+
Sbjct: 360 IPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTI 419

Query: 603 LDLHSNQLQGNIPY 616
              + +     + Y
Sbjct: 420 TWENLSTDNPAVTY 433

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 95.1 bits (237), Expect = 1e-20
 Identities = 78/442 (17%), Positives = 142/442 (32%), Gaps = 65/442 (14%)

Query: 83  LSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQ 142
               +      ++     L  L SL+   +    T++  G+  LT LT L  ++      
Sbjct: 23  EVAAAFEMQATDTISEEQLATLTSLDCHNSSI--TDMT-GIEKLTGLTKLICTSNNITT- 78

Query: 143 IPIQVSGMTRLVTLDLS-----SLNRFGAP----LKLENPNLSGL-LQNLAELRELYLDG 192
             + +S  T L  L        +L+         L  +   L+ L +     L  L    
Sbjct: 79  --LDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCAR 136

Query: 193 ANISAPGIEWCQALSSLV---------------PKLQVLSLSSCYLSGPIHPSLAKLQSL 237
             ++   +     L+ L                 +L  L  S   ++      +++ + L
Sbjct: 137 NTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKIT---ELDVSQNKLL 193

Query: 238 SVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQ 297
           + +  D N++       L     LT L  S ++L       +  +  L   D S N L  
Sbjct: 194 NRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPL-- 245

Query: 298 GSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQL 357
            +  D    S L TL    T+   +    + +   L       C     +   + + TQL
Sbjct: 246 -TELDVSTLSKLTTLHCIQTDLLEI---DLTHNTQLIYFQAEGCRKIKELD--VTHNTQL 299

Query: 358 VYLDLSFNKFVGPIPSLHMSK--NLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSL 415
             LD         I  L +S+   L +L L+   L    +  D  H + L  +      +
Sbjct: 300 YLLDCQAAG----ITELDLSQNPKLVYLYLNNTEL----TELDVSHNTKLKSLSCVNAHI 351

Query: 416 NGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDT----IDLSGNRLE-GPIPM 470
                 S+  +P L     AE +   +  E    +S  +      +D  GN +   P   
Sbjct: 352 Q-DFS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDG 409

Query: 471 SIFDLRNLKILILSSNKLNGTV 492
            ++D     I   + +  N  V
Sbjct: 410 GVYDQATNTITWENLSTDNPAV 431

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 82.8 bits (205), Expect = 1e-16
 Identities = 64/496 (12%), Positives = 140/496 (28%), Gaps = 92/496 (18%)

Query: 502 NLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISG 561
           N A    +   +           + + +L   +  +  +  ++  + L  L  + N I+ 
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNIT- 77

Query: 562 EIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKA 621
            +        N +L YL    N L++L     ++ L+ +T L+  +N+L        P  
Sbjct: 78  TLDLS----QNTNLTYLACDSNKLTNL----DVTPLTKLTYLNCDTNKLTKLDVSQNPLL 129

Query: 622 VLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLS 681
             ++ + N+ T     D+ +    T       N     +   +     L  LD S NK++
Sbjct: 130 TYLNCARNTLTE---IDVSHNTQLT-ELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT 183

Query: 682 GKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCR 741
                                        +    N  L+ L+ + N +       L    
Sbjct: 184 ----------------------------ELDVSQNKLLNRLNCDTNNITKL---DLNQNI 212

Query: 742 NLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASN 801
            L  LD  +NK+       +  ++ L       N     +          KL  +     
Sbjct: 213 QLTFLDCSSNKL-TEID--VTPLTQLTYFDCSVNPL-TELDVSTL----SKLTTLHCIQT 264

Query: 802 NFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVK 861
           +         +              ++       + +         + VT          
Sbjct: 265 D---------LLEIDL---------THNTQ--LIYFQAEGCRKIKELDVTH--------- 295

Query: 862 ILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSM 921
             +    +D            ++ +   L  L L+   LT  +   + +  +L+SL    
Sbjct: 296 -NTQLYLLDCQAAGI---TELDLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVN 348

Query: 922 NHLSGQIPIQLANLTFLSFLNLSHNNLVGKIPISTQLQSFLATSFEGNKGLCGPPLNVCR 981
            H+       +  +  L+    +    +     +    S             G P+N+  
Sbjct: 349 AHIQ-DFS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEP 406

Query: 982 TNSSKALPSSPASTDE 997
            +      ++   T E
Sbjct: 407 GDGGVYDQATNTITWE 422

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.0 bits (99), Expect = 8e-04
 Identities = 57/337 (16%), Positives = 107/337 (31%), Gaps = 63/337 (18%)

Query: 623 LVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSG 682
           L      SF    PDD  NF S       +   +      +  +   L  LD   + ++ 
Sbjct: 3   LKAGQTQSFNDWFPDD--NFASEVA----AAFEMQATDTISEEQLATLTSLDCHNSSIT- 55

Query: 683 KMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRN 742
                                 ++G          GL  L    N +       L+   N
Sbjct: 56  ---------------------DMTG-----IEKLTGLTKLICTSNNITTL---DLSQNTN 86

Query: 743 LVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNN 802
           L  L   +NK+ +     +  ++ L  L   +N     +   +N    P L  ++ A N 
Sbjct: 87  LTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKL-TKLDVSQN----PLLTYLNCARNT 138

Query: 803 FGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKI 862
               +     T    +    ++  +         L   D  +     +         V  
Sbjct: 139 LT-EIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--------VSQ 189

Query: 863 LSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMN 922
             +   ++   NN       ++ +   L  L+ S N LT  I   +  L QL   D S+N
Sbjct: 190 NKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVN 243

Query: 923 HLSGQIPIQLANLTFLSFLNLSHNNLVGKIPISTQLQ 959
            L+    + ++ L+ L+ L+    +L+ +I ++   Q
Sbjct: 244 PLT---ELDVSTLSKLTTLHCIQTDLL-EIDLTHNTQ 276

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  114 bits (287), Expect = 2e-26
 Identities = 84/457 (18%), Positives = 164/457 (35%), Gaps = 43/457 (9%)

Query: 348 PTSLANLTQLVYLDLSFNKFVGPIPSLHMS-----KNLTHLDLSYNALPGAISSTDWEHL 402
              ++ L++L  L LS N+    I SL        ++L +LD+S+N L     +     +
Sbjct: 69  MPDISFLSELRVLRLSHNR----IRSLDFHVFLFNQDLEYLDVSHNRL----QNISCCPM 120

Query: 403 SNLVYVDLRYNSLNGSIPGSLFS-LPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSG 461
           ++L ++DL +N  +       F  L  L  L L+  KF  L  +    +   L  I L  
Sbjct: 121 ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDL 178

Query: 462 NRLEGP-IPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSD 520
                         + N  +L L  +  N    +     ++ L  L+LS   L       
Sbjct: 179 VSYHIKGGETESLQIPNTTVLHLVFHP-NSLFSVQVNMSVNALGHLQLSNIKLNDENCQR 237

Query: 521 SSFPSQVRTLRLASCKLRV------------IPNLKNQSKLFNLDLSDNQISGEIPNWVW 568
                   T       + +            +        +  L++ +  I+  I    +
Sbjct: 238 LMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEF 297

Query: 569 EIGNVSLQYLNLSHNLLSSLQRPFSI--SDLSPITVLDLHSNQLQGNIPYPPPKAV---- 622
                +L+ L + H              S  + + +  L  +     I    P +     
Sbjct: 298 TYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP-FIHMVCPPSPSSFT 356

Query: 623 LVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGV--IPETLCRAKYLLVLDLSKNKL 680
            ++++ N FT S+               L  N +     +         L  LD+S N L
Sbjct: 357 FLNFTQNVFTDSVFQGCSTLKRLQT-LILQRNGLKNFFKVALMTKNMSSLETLDVSLNSL 415

Query: 681 SGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANC 740
           +          +E + VLNL  N L+G++    P    +  LDL+ N++  ++PK + + 
Sbjct: 416 NSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK--VKVLDLHNNRI-MSIPKDVTHL 472

Query: 741 RNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSF 777
           + L  L++ +N+++       + ++SL+ + L  N +
Sbjct: 473 QALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 96.9 bits (241), Expect = 8e-21
 Identities = 87/465 (18%), Positives = 158/465 (33%), Gaps = 63/465 (13%)

Query: 104 LQSLNLAFNMFNATEIPSG-LGSLTNLTNLNLSNAGFAGQIPIQV-SGMTRLVTLDLSSL 161
            ++L+L+ N    +E+    +  L+ L  L LS+      +   V      L  LD+S  
Sbjct: 54  TKALSLSQNSI--SELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSH- 109

Query: 162 NR-----FGAPLKLENPNLS----------GLLQNLAELRELYLDGANISAPGIEWCQAL 206
           NR           L + +LS              NL +L  L L  A      +     +
Sbjct: 110 NRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL---LPV 166

Query: 207 SSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRL 266
           + L     +L L S ++ G    SL    +  +  +   + L  V   ++    L  L+L
Sbjct: 167 AHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMS-VNALGHLQL 225

Query: 267 SHSRLNG-------TFPEKILQVHTLETLDLSGNSLLQGSLPD---FPKNSSLRTLMLSN 316
           S+ +LN        TF  ++ +  TL  + L               F     +  L + N
Sbjct: 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285

Query: 317 TNFSGVLPDSIGN-----LKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPI 371
              +  +           LK+L    +    F  S     +   ++    LS +      
Sbjct: 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD----T 341

Query: 372 PSLHMS-----KNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSL 426
           P +HM       + T L+ + N             L  L  + L+ N L  +        
Sbjct: 342 PFIHMVCPPSPSSFTFLNFTQNVF-TDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMT 399

Query: 427 PMLQQLQLAENKFGGL---IPEFSNASSSALDTIDLSGNRLEGPIPMSIFD--LRNLKIL 481
             +  L+  +     L     + + A + ++  ++LS N L      S+F      +K+L
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML----TGSVFRCLPPKVKVL 455

Query: 482 ILSSNKLNGTVQLAAIQRLHNLAKLELSYNNL-TVNAGSDSSFPS 525
            L +N++        +  L  L +L ++ N L +V  G      S
Sbjct: 456 DLHNNRI--MSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTS 498

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 89.5 bits (222), Expect = 2e-18
 Identities = 76/424 (17%), Positives = 142/424 (33%), Gaps = 39/424 (9%)

Query: 97  PLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGF-AGQIPIQVSGMTRLVT 155
               +  L+ L+L+FN F+   +    G+LT LT L LS A F    +          + 
Sbjct: 116 SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCIL 175

Query: 156 LDLSSL----NRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQALSSLVP 211
           LDL S         +        L  +    +          N +   ++      +   
Sbjct: 176 LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVN-ALGHLQLSNIKLNDEN 234

Query: 212 KLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRL 271
             ++++  S    GP   ++  LQ +         L         ++ N+ +L ++    
Sbjct: 235 CQRLMTFLSELTRGPTLLNVT-LQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERID 293

Query: 272 NGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLK 331
              F      + +L    +     L      +   + +   MLS ++   +      +  
Sbjct: 294 REEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPS 353

Query: 332 NLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFV---GPIPSLHMSKNLTHLDLSYN 388
           + + L+     F  S+    + L +L  L L  N                +L  LD+S N
Sbjct: 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413

Query: 389 ALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSN 448
           +L             +++ ++L  N L GS+   L   P ++ L                
Sbjct: 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVL---------------- 455

Query: 449 ASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLEL 508
                    DL  NR+   IP  +  L+ L+ L ++SN+L  +V      RL +L  + L
Sbjct: 456 ---------DLHNNRIMS-IPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWL 504

Query: 509 SYNN 512
             N 
Sbjct: 505 HDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 85.7 bits (212), Expect = 3e-17
 Identities = 100/540 (18%), Positives = 182/540 (33%), Gaps = 91/540 (16%)

Query: 407 YVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIP-EFSNASSSALDTIDLSGNRLE 465
            VD    +L   +P  L   P  + L L++N    L   + S  S   L  + LS NR+ 
Sbjct: 35  MVDYSNRNLT-HVPKDL--PPRTKALSLSQNSISELRMPDISFLSE--LRVLRLSHNRIR 89

Query: 466 GPIPMSIFD-LRNLKILILSSNKLNGTVQLAAI--QRLHNLAKLELSYNNL-TVNAGSDS 521
             +   +F   ++L+ L +S N      +L  I    + +L  L+LS+N+   +    + 
Sbjct: 90  S-LDFHVFLFNQDLEYLDVSHN------RLQNISCCPMASLRHLDLSFNDFDVLPVCKEF 142

Query: 522 SFPSQVRTLRLASCKLRVIPNLK---NQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYL 578
              +++  L L++ K R +  L           LDL    I G       +I N ++ +L
Sbjct: 143 GNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETE-SLQIPNTTVLHL 201

Query: 579 NLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPP-------PKAVLVDYSNNSF 631
               N L S+Q   S++ L  + + ++  N                 P  + V   +   
Sbjct: 202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET 261

Query: 632 TSSIPDDIGNFV--SFTLFFSLSNNSITGVIPETLCRA-----KYLLVLDLSKNKLSGKM 684
           T      +  F       + ++ N +IT  I            K L++  +         
Sbjct: 262 TWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSK 321

Query: 685 PTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLV 744
                  +E + +  L  +       V  P       L+   N    +V +  +  + L 
Sbjct: 322 EALYSVFAE-MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQ 380

Query: 745 VLDLGNNKIR--DTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNN 802
            L L  N ++         +N+SSL  L +  NS   + +          + +++L+SN 
Sbjct: 381 TLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSL-NSHAYDRTCAWAESILVLNLSSNM 439

Query: 803 FGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKI 862
             G V  +C+                                               VK+
Sbjct: 440 LTGSVF-RCLPP--------------------------------------------KVKV 454

Query: 863 LSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMN 922
           L      D   N     IP+++  L++L  LN++ N L          L  L+ + L  N
Sbjct: 455 L------DLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 79.9 bits (197), Expect = 2e-15
 Identities = 60/360 (16%), Positives = 112/360 (31%), Gaps = 25/360 (6%)

Query: 95  SSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLT--NLTNLNLSNAGFAGQIPIQVSGMTR 152
              L  + +L    +  ++ +         SL   N T L+L     +         +  
Sbjct: 160 QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNA 219

Query: 153 LVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQALSSLVPK 212
           L  L LS++       +         L     L  + L     +              P 
Sbjct: 220 LGHLQLSNIKLNDENCQ-RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRP- 277

Query: 213 LQVLSLSSCYLSGPIHPSLA-----KLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLS 267
           ++ L++ +  ++  I           L+SL +  +     L       + F  +    LS
Sbjct: 278 VEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLS 337

Query: 268 HSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGV--LPD 325
            S              +   L+ + N               L+TL+L          +  
Sbjct: 338 ISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVAL 397

Query: 326 SIGNLKNLSRLDLALCYFDGSIPTSLANL-TQLVYLDLSFNKFV-GPIPSLHMSKNLTHL 383
              N+ +L  LD++L   +             ++ L+LS N         L     +  L
Sbjct: 398 MTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVL 455

Query: 384 DLSYN---ALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLF-SLPMLQQLQLAENKF 439
           DL  N   ++P  +      HL  L  +++  N L  S+P  +F  L  LQ + L +N +
Sbjct: 456 DLHNNRIMSIPKDV-----THLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 77.2 bits (190), Expect = 1e-14
 Identities = 85/528 (16%), Positives = 168/528 (31%), Gaps = 78/528 (14%)

Query: 439 FGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQ 498
              ++   +  S+     +D S   L   +P  +      K L LS N ++  +++  I 
Sbjct: 18  LALIVGSMTPFSNELESMVDYSNRNLTH-VPKDL--PPRTKALSLSQNSIS-ELRMPDIS 73

Query: 499 RLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQ 558
            L  L  L LS+N +        S    V                     L  LD+S N+
Sbjct: 74  FLSELRVLRLSHNRIR-------SLDFHV---------------FLFNQDLEYLDVSHNR 111

Query: 559 ISGEIPNWVWEIGN-VSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQ----GN 613
           +   I           SL++L+LS N    L       +L+ +T L L + + +      
Sbjct: 112 LQ-NIS-----CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLP 165

Query: 614 IPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPET-LCRAKYLLV 672
           + +     +L+D  +        + +    +  L      NS+  V     +    +L +
Sbjct: 166 VAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL 225

Query: 673 LDLSKNKLSGKMPTCLIKMSEILGVL------NLRGNSLSGTLSVTFPGNCGLHTLDLNG 726
            ++  N  + +     +        L      ++            F     +  L++  
Sbjct: 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285

Query: 727 NQLGGTVPKSLANC-----RNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNI 781
             +   + +          ++L++  + N     +        + + + +L  +      
Sbjct: 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIH 345

Query: 782 SCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIAD 841
                  S      ++   N F   V Q C T                       LK   
Sbjct: 346 MVCPPSPS--SFTFLNFTQNVFTDSVFQGCST-----------------------LKRLQ 380

Query: 842 FYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNF-DGPIPEEIGRLKSLHGLNLSQNAL 900
                   + +      + K +S   ++D S N+             +S+  LNLS N L
Sbjct: 381 TLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440

Query: 901 TGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNL 948
           TG +   +    +++ LDL  N +   IP  + +L  L  LN++ N L
Sbjct: 441 TGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQL 485

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  110 bits (276), Expect = 3e-26
 Identities = 62/335 (18%), Positives = 116/335 (34%), Gaps = 51/335 (15%)

Query: 454 LDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNL 513
           L  +  S   LE  +P  +    +  +L L +NK+   ++    + L NL  L L  N +
Sbjct: 33  LRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKI 88

Query: 514 TVNAGSDSSFP--SQVRTLRLASCKLRVIPN--LKNQSKLFNLDLSDNQISGEIPNWVWE 569
           +    S  +F    ++  L L+  +L+ +P    K    L  L + +N+I+ ++   V+ 
Sbjct: 89  SKI--SPGAFAPLVKLERLYLSKNQLKELPEKMPKT---LQELRVHENEIT-KVRKSVFN 142

Query: 570 IGNVSLQYLNLSHNLLSSLQ-RPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSN 628
            G   +  + L  N L S      +   +  ++ + +    +                  
Sbjct: 143 -GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI------------------ 183

Query: 629 NSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCL 688
               ++IP   G   S T    L  N IT V   +L     L  L LS N +S      L
Sbjct: 184 ----TTIPQ--GLPPSLT-ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236

Query: 689 IKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGG------TVPKSLANCRN 742
                 L  L+L  N L   +      +  +  + L+ N +          P       +
Sbjct: 237 ANTPH-LRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS 294

Query: 743 LVVLDLGNNKIRDTF--PWWLENISSLRVLVLRSN 775
              + L +N ++     P     +     + L + 
Sbjct: 295 YSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  110 bits (276), Expect = 3e-26
 Identities = 69/382 (18%), Positives = 128/382 (33%), Gaps = 91/382 (23%)

Query: 379 NLTHLDLSYNAL---PGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLA 435
           +L  +  S   L   P  +         +   +DL+ N +     G   +L  L  L L 
Sbjct: 32  HLRVVQCSDLGLEKVPKDLPP-------DTALLDLQNNKITEIKDGDFKNLKNLHTLILI 84

Query: 436 ENKFGGLIPE-FSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQL 494
            NK   + P  F+      L+ + LS N+L+  +P  +   + L+ L +  N++   V+ 
Sbjct: 85  NNKISKISPGAFAPLVK--LERLYLSKNQLKE-LPEKMP--KTLQELRVHENEIT-KVRK 138

Query: 495 AAIQRLHNLAKLELSYNNLTVNAGSDSSFP--SQVRTLRLASCKLRVIPNLKNQSKLFNL 552
           +    L+ +  +EL  N L  +   + +F    ++  +R+A   +  IP       L  L
Sbjct: 139 SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ-GLPPSLTEL 197

Query: 553 DLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQG 612
            L  N+I+ ++     + G  +L  L LS N +S++    S+++   +  L L++N+L  
Sbjct: 198 HLDGNKIT-KVDAASLK-GLNNLAKLGLSFNSISAVD-NGSLANTPHLRELHLNNNKLV- 253

Query: 613 NIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLV 672
                                                          +P  L   KY+ V
Sbjct: 254 ----------------------------------------------KVPGGLADHKYIQV 267

Query: 673 LDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGT 732
           + L  N +S                  +  N                  + L  N +   
Sbjct: 268 VYLHNNNIS-----------------AIGSNDFCPP--GYNTKKASYSGVSLFSNPVQYW 308

Query: 733 V--PKSLANCRNLVVLDLGNNK 752
              P +         + LGN K
Sbjct: 309 EIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  107 bits (269), Expect = 2e-25
 Identities = 62/323 (19%), Positives = 109/323 (33%), Gaps = 50/323 (15%)

Query: 285 LETLDLSGNSLLQGSLP-DFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYF 343
           L  +  S   L    +P D P +     L L N   + +      NLKNL  L L     
Sbjct: 33  LRVVQCSDLGLE--KVPKDLPPD--TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 344 DGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLS 403
               P + A L +L  L LS N+    +P   M K L  L +  N +   +  + +  L+
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLKE-LPE-KMPKTLQELRVHENEI-TKVRKSVFNGLN 145

Query: 404 NLVYVDLRYNSL-NGSIPGSLFS-LPMLQQLQLAENK--------FGGL----------- 442
            ++ V+L  N L +  I    F  +  L  +++A+             L           
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKIT 205

Query: 443 -IPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLH 501
            +   S    + L  + LS N +      S+ +  +L+ L L++NKL   V    +    
Sbjct: 206 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVP-GGLADHK 263

Query: 502 NLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQIS- 560
            +  + L  NN++                 + S           ++    + L  N +  
Sbjct: 264 YIQVVYLHNNNIS----------------AIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307

Query: 561 GEIPNWVWEIGNVSLQYLNLSHN 583
            EI    +         + L + 
Sbjct: 308 WEIQPSTFR-CVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 96.2 bits (240), Expect = 1e-21
 Identities = 69/333 (20%), Positives = 108/333 (32%), Gaps = 57/333 (17%)

Query: 117 TEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLS 176
            ++P  L    +   L+L N             +  L TL L + N+     K+      
Sbjct: 44  EKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILIN-NKIS---KISP---- 93

Query: 177 GLLQNLAELRELYLDGANISAPGIEWCQALSSLVPK-LQVLSLSSCYLSGPIHP-SLAKL 234
           G    L +L  LYL    +          L   +PK LQ L +    ++  +       L
Sbjct: 94  GAFAPLVKLERLYLSKNQLKE--------LPEKMPKTLQELRVHENEITK-VRKSVFNGL 144

Query: 235 QSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNS 294
             + V+ L  N L S   E  A F  +  L                       + ++  +
Sbjct: 145 NQMIVVELGTNPLKSSGIENGA-FQGMKKLS---------------------YIRIADTN 182

Query: 295 L--LQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLA 352
           +  +   LP      SL  L L     + V   S+  L NL++L L+          SLA
Sbjct: 183 ITTIPQGLP-----PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237

Query: 353 NLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNAL----PGAISST-DWEHLSNLVY 407
           N   L  L L+ NK V     L   K +  + L  N +                 ++   
Sbjct: 238 NTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG 297

Query: 408 VDLRYNSLN-GSIPGSLFS-LPMLQQLQLAENK 438
           V L  N +    I  S F  + +   +QL   K
Sbjct: 298 VSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 78.5 bits (194), Expect = 1e-15
 Identities = 57/331 (17%), Positives = 106/331 (32%), Gaps = 67/331 (20%)

Query: 624 VDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGK 683
           V  S+      +P D+      T    L NN IT +        K L  L L  NK+S  
Sbjct: 36  VQCSDLGLEK-VPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 91

Query: 684 MPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNL 743
            P     + + L  L L  N L             L  L ++ N++             +
Sbjct: 92  SPGAFAPLVK-LERLYLSKNQLKELPEKMPKT---LQELRVHENEITKVRKSVFNGLNQM 147

Query: 744 VVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNF 803
           +V++LG N ++ +               + + +F G            KL  + +A  N 
Sbjct: 148 IVVELGTNPLKSSG--------------IENGAFQGM----------KKLSYIRIADTNI 183

Query: 804 GGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKIL 863
              +P                   +  ++H +  KI               ++   +K L
Sbjct: 184 T-TIP--------------QGLPPSLTELHLDGNKI-------------TKVDAASLKGL 215

Query: 864 SIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNH 923
           +    +  S N+        +     L  L+L+ N L   +P  + + + ++ + L  N+
Sbjct: 216 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNN 274

Query: 924 LSG------QIPIQLANLTFLSFLNLSHNNL 948
           +S         P         S ++L  N +
Sbjct: 275 ISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 62.7 bits (153), Expect = 2e-10
 Identities = 48/246 (19%), Positives = 85/246 (34%), Gaps = 53/246 (21%)

Query: 81  LDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSG-LGSLTNLTNLNLSNAGF 139
           L + E  I+  +  S     L  +  + L  N   ++ I +G    +  L+ + +++   
Sbjct: 126 LRVHENEITK-VRKSV-FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD--- 180

Query: 140 AGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPG 199
                      T + T+                    GL  +   L EL+LDG  I+   
Sbjct: 181 -----------TNITTIP------------------QGLPPS---LTELHLDGNKITKVD 208

Query: 200 IEWCQALSSLVPKLQVLSLSSCYLSGPIHP-SLAKLQSLSVIRLDQNDLLSPVPEFLADF 258
                +L  L   L  L LS   +S  +   SLA    L  + L+ N L+  VP  LAD 
Sbjct: 209 AA---SLKGL-NNLAKLGLSFNSISA-VDNGSLANTPHLRELHLNNNKLVK-VPGGLADH 262

Query: 259 FNLTSLRLSHSRL----NGTF--PEKILQVHTLETLDLSGNSLLQGSLPD--FPKNSSLR 310
             +  + L ++ +    +  F  P    +  +   + L  N +    +    F       
Sbjct: 263 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 322

Query: 311 TLMLSN 316
            + L N
Sbjct: 323 AVQLGN 328

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  107 bits (270), Expect = 7e-25
 Identities = 60/247 (24%), Positives = 97/247 (39%), Gaps = 18/247 (7%)

Query: 371 IPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQ 430
           +P   +S N   L+L  N +   I    ++HL +L  + L  N +     G+   L  L 
Sbjct: 58  VPD-GISTNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLN 115

Query: 431 QLQLAENKFGGLIPE-FSNASSSALDTIDLSGNRLEGPIPMSIF-DLRNLKILILSSNKL 488
            L+L +N+   +    F   S   L  + L  N +E  IP   F  + +L+ L L   K 
Sbjct: 116 TLELFDNRLTTIPNGAFVYLSK--LKELWLRNNPIES-IPSYAFNRIPSLRRLDLGELKR 172

Query: 489 NGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFP--SQVRTLRLASCKLRVIPN--LK 544
              +   A + L NL  L L+  NL        +     ++  L L+   L  I     +
Sbjct: 173 LSYISEGAFEGLSNLRYLNLAMCNLR----EIPNLTPLIKLDELDLSGNHLSAIRPGSFQ 228

Query: 545 NQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLD 604
               L  L +  +QI   I    ++    SL  +NL+HN L+ L      + L  +  + 
Sbjct: 229 GLMHLQKLWMIQSQIQ-VIERNAFD-NLQSLVEINLAHNNLTLLP-HDLFTPLHHLERIH 285

Query: 605 LHSNQLQ 611
           LH N   
Sbjct: 286 LHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 94.4 bits (235), Expect = 2e-20
 Identities = 54/260 (20%), Positives = 94/260 (36%), Gaps = 31/260 (11%)

Query: 521 SSFPSQVRTLRLASCKLRVIPN--LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYL 578
               +  R L L   ++++I     K+   L  L LS N I   I    +  G  +L  L
Sbjct: 60  DGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFN-GLANLNTL 117

Query: 579 NLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDD 638
            L  N L+++    +   LS +  L L +N +                       SIP  
Sbjct: 118 ELFDNRLTTIP-NGAFVYLSKLKELWLRNNPI----------------------ESIPSY 154

Query: 639 IGNFVSFTLFFSLS-NNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGV 697
             N +       L     ++ +          L  L+L+   L  ++P  L  + + L  
Sbjct: 155 AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIK-LDE 211

Query: 698 LNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTF 757
           L+L GN LS     +F G   L  L +  +Q+      +  N ++LV ++L +N +    
Sbjct: 212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP 271

Query: 758 PWWLENISSLRVLVLRSNSF 777
                 +  L  + L  N +
Sbjct: 272 HDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.0 bits (221), Expect = 1e-18
 Identities = 48/218 (22%), Positives = 77/218 (35%), Gaps = 10/218 (4%)

Query: 176 SGLLQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHP-SLAKL 234
               ++L  L  L L   +I    IE   A + L   L  L L    L+  I   +   L
Sbjct: 81  VNSFKHLRHLEILQLSRNHIRT--IE-IGAFNGL-ANLNTLELFDNRLTT-IPNGAFVYL 135

Query: 235 QSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQ-VHTLETLDLSGN 293
             L  + L  N + S          +L  L L   +      E   + +  L  L+L+  
Sbjct: 136 SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195

Query: 294 SLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLAN 353
           +L    +P+      L  L LS  + S + P S   L +L +L +           +  N
Sbjct: 196 NLR--EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN 253

Query: 354 LTQLVYLDLSFNKFVG-PIPSLHMSKNLTHLDLSYNAL 390
           L  LV ++L+ N     P        +L  + L +N  
Sbjct: 254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 82.1 bits (203), Expect = 2e-16
 Identities = 56/238 (23%), Positives = 89/238 (37%), Gaps = 20/238 (8%)

Query: 104 LQSLNLAFNMFNATEIPSG-LGSLTNLTNLNLSNAGFAGQIPIQV-SGMTRLVTLDLSSL 161
            + LNL  N      I       L +L  L LS       I I   +G+  L TL+L   
Sbjct: 66  TRLLNLHEN--QIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFD- 121

Query: 162 NRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSC 221
           NR      +     +G    L++L+EL+L    I +  I    A + + P L+ L L   
Sbjct: 122 NRLTT---IP----NGAFVYLSKLKELWLRNNPIES--IPS-YAFNRI-PSLRRLDLGEL 170

Query: 222 YLSGPIHP-SLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKIL 280
                I   +   L +L  + L     L  +P        L  L LS + L+   P    
Sbjct: 171 KRLSYISEGAFEGLSNLRYLNLAMC-NLREIPNL-TPLIKLDELDLSGNHLSAIRPGSFQ 228

Query: 281 QVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDL 338
            +  L+ L +  + +       F    SL  + L++ N + +  D    L +L R+ L
Sbjct: 229 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL 286

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.8 bits (140), Expect = 9e-09
 Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 6/108 (5%)

Query: 697 VLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDT 756
           +LNL  N +      +F     L  L L+ N +      +     NL  L+L +N++   
Sbjct: 68  LLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI 127

Query: 757 FPWWLENISSLRVLVLRSNSFYGNISCRENG--DSWPKLQIVDLASNN 802
                  +S L+ L LR+N     I    +   +  P L+ +DL    
Sbjct: 128 PNGAFVYLSKLKELWLRNN----PIESIPSYAFNRIPSLRRLDLGELK 171

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.1 bits (133), Expect = 8e-08
 Identities = 29/129 (22%), Positives = 43/129 (33%), Gaps = 10/129 (7%)

Query: 650 SLSNNSITGV---IPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLS 706
                ++  V   I            L+L +N++          +   L +L L  N + 
Sbjct: 49  ICVRKNLREVPDGISTNTRL------LNLHENQIQIIKVNSFKHLRH-LEILQLSRNHIR 101

Query: 707 GTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISS 766
                 F G   L+TL+L  N+L      +      L  L L NN I     +    I S
Sbjct: 102 TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS 161

Query: 767 LRVLVLRSN 775
           LR L L   
Sbjct: 162 LRRLDLGEL 170

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.0 bits (117), Expect = 7e-06
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 2/82 (2%)

Query: 867 TSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSG 926
             ++ +  N    IP  +  L  L  L+LS N L+   P +   L  L+ L +  + +  
Sbjct: 188 RYLNLAMCNLRE-IPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV 245

Query: 927 QIPIQLANLTFLSFLNLSHNNL 948
                  NL  L  +NL+HNNL
Sbjct: 246 IERNAFDNLQSLVEINLAHNNL 267

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 48.6 bits (116), Expect = 7e-06
 Identities = 19/82 (23%), Positives = 30/82 (36%)

Query: 867 TSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSG 926
             ++   N            L+ L  L LS+N +      A   L  L +L+L  N L+ 
Sbjct: 67  RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT 126

Query: 927 QIPIQLANLTFLSFLNLSHNNL 948
                   L+ L  L L +N +
Sbjct: 127 IPNGAFVYLSKLKELWLRNNPI 148

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 3/83 (3%)

Query: 866 FTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLS 925
           F+ +   R N    +P+ I    +   LNL +N +     ++  +L+ LE L LS NH+ 
Sbjct: 45  FSKVICVRKNLRE-VPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR 101

Query: 926 GQIPIQLANLTFLSFLNLSHNNL 948
                    L  L+ L L  N L
Sbjct: 102 TIEIGAFNGLANLNTLELFDNRL 124

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.9 bits (109), Expect = 6e-05
 Identities = 22/87 (25%), Positives = 35/87 (40%)

Query: 863 LSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMN 922
           L     +D S N+     P     L  L  L + Q+ +     +A  NLQ L  ++L+ N
Sbjct: 206 LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265

Query: 923 HLSGQIPIQLANLTFLSFLNLSHNNLV 949
           +L+         L  L  ++L HN   
Sbjct: 266 NLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.5 bits (108), Expect = 8e-05
 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 887 LKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLS-MNHLSGQIPIQLANLTFLSFLNLSH 945
           L  L  L L  N +      A   +  L  LDL  +  LS         L+ L +LNL+ 
Sbjct: 135 LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194

Query: 946 NNL 948
            NL
Sbjct: 195 CNL 197

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  107 bits (270), Expect = 9e-25
 Identities = 63/247 (25%), Positives = 97/247 (39%), Gaps = 18/247 (7%)

Query: 371 IPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQ 430
           +P   +  N  +L+L  N +   I +  + HL +L  + L  NS+     G+   L  L 
Sbjct: 69  VPQ-GIPSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLN 126

Query: 431 QLQLAENKFGGLIPE-FSNASSSALDTIDLSGNRLEGPIPMSIF-DLRNLKILILSSNKL 488
            L+L +N    +    F   S   L  + L  N +E  IP   F  + +L  L L   K 
Sbjct: 127 TLELFDNWLTVIPSGAFEYLSK--LRELWLRNNPIES-IPSYAFNRVPSLMRLDLGELKK 183

Query: 489 NGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFP--SQVRTLRLASCKLRVIPN--LK 544
              +   A + L NL  L L   N+        +      +  L ++      I      
Sbjct: 184 LEYISEGAFEGLFNLKYLNLGMCNIK----DMPNLTPLVGLEELEMSGNHFPEIRPGSFH 239

Query: 545 NQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLD 604
             S L  L + ++Q+S  I    ++ G  SL  LNL+HN LSSL      + L  +  L 
Sbjct: 240 GLSSLKKLWVMNSQVS-LIERNAFD-GLASLVELNLAHNNLSSLP-HDLFTPLRYLVELH 296

Query: 605 LHSNQLQ 611
           LH N   
Sbjct: 297 LHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 92.9 bits (231), Expect = 8e-20
 Identities = 54/260 (20%), Positives = 85/260 (32%), Gaps = 31/260 (11%)

Query: 521 SSFPSQVRTLRLASCKLRVIPN--LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYL 578
              PS  R L L    +++I     ++   L  L L  N I  +I    +  G  SL  L
Sbjct: 71  QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFN-GLASLNTL 128

Query: 579 NLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDD 638
            L  N L+ +    +   LS +  L L +N +                       SIP  
Sbjct: 129 ELFDNWLTVIP-SGAFEYLSKLRELWLRNNPI----------------------ESIPSY 165

Query: 639 IGNFVSFTLFFSLSN-NSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGV 697
             N V   +   L     +  +          L  L+L    +   MP  L  +   L  
Sbjct: 166 AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVG-LEE 222

Query: 698 LNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTF 757
           L + GN        +F G   L  L +  +Q+      +     +LV L+L +N +    
Sbjct: 223 LEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP 282

Query: 758 PWWLENISSLRVLVLRSNSF 777
                 +  L  L L  N +
Sbjct: 283 HDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 91.3 bits (227), Expect = 3e-19
 Identities = 51/268 (19%), Positives = 93/268 (34%), Gaps = 25/268 (9%)

Query: 128 NLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRE 187
             + +  +  G + ++P  +   +    L+L   N       ++    +   ++L  L  
Sbjct: 55  QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLME-NNIQ---MIQ----ADTFRHLHHLEV 103

Query: 188 LYLDGANISA--PGIEWCQALSSLVPKLQVLSLSSCYLSGPIHP-SLAKLQSLSVIRLDQ 244
           L L   +I     G     A + L   L  L L   +L+  I   +   L  L  + L  
Sbjct: 104 LQLGRNSIRQIEVG-----AFNGL-ASLNTLELFDNWLTV-IPSGAFEYLSKLRELWLRN 156

Query: 245 NDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQ-VHTLETLDLSGNSLLQGSLPDF 303
           N + S          +L  L L   +      E   + +  L+ L+L   ++    +P+ 
Sbjct: 157 NPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK--DMPNL 214

Query: 304 PKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLS 363
                L  L +S  +F  + P S   L +L +L +           +   L  LV L+L+
Sbjct: 215 TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA 274

Query: 364 FNKFVG-PIPSLHMSKNLTHLDLSYNAL 390
            N     P       + L  L L +N  
Sbjct: 275 HNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 84.4 bits (209), Expect = 3e-17
 Identities = 55/240 (22%), Positives = 88/240 (36%), Gaps = 24/240 (10%)

Query: 104 LQSLNLAFNMFNATEIPSG-LGSLTNLTNLNLSNAGFAGQIPIQV-SGMTRLVTLDLSSL 161
            + LNL  N  N   I +     L +L  L L       QI +   +G+  L TL+L   
Sbjct: 77  TRYLNLMEN--NIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFD- 132

Query: 162 NRFGAPLKLENPNLSGLLQNLAELRELYLDGANISA--PGIEWCQALSSLVPKLQVLSLS 219
           N     L +      G  + L++LREL+L    I +         A + + P L  L L 
Sbjct: 133 NW----LTVIPS---GAFEYLSKLRELWLRNNPIESIPSY-----AFNRV-PSLMRLDLG 179

Query: 220 SCYLSGPIHP-SLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEK 278
                  I   +   L +L  + L     +  +P        L  L +S +      P  
Sbjct: 180 ELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPNL-TPLVGLEELEMSGNHFPEIRPGS 237

Query: 279 ILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDL 338
              + +L+ L +  + +       F   +SL  L L++ N S +  D    L+ L  L L
Sbjct: 238 FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHL 297

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 56.7 bits (137), Expect = 3e-08
 Identities = 27/108 (25%), Positives = 41/108 (37%), Gaps = 6/108 (5%)

Query: 697 VLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDT 756
            LNL  N++    + TF     L  L L  N +      +     +L  L+L +N +   
Sbjct: 79  YLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI 138

Query: 757 FPWWLENISSLRVLVLRSNSFYGNISCRENG--DSWPKLQIVDLASNN 802
                E +S LR L LR+N     I    +   +  P L  +DL    
Sbjct: 139 PSGAFEYLSKLRELWLRNN----PIESIPSYAFNRVPSLMRLDLGELK 182

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 2/82 (2%)

Query: 867 TSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSG 926
             ++    N    +P  +  L  L  L +S N      P +   L  L+ L +  + +S 
Sbjct: 199 KYLNLGMCNIKD-MPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256

Query: 927 QIPIQLANLTFLSFLNLSHNNL 948
                   L  L  LNL+HNNL
Sbjct: 257 IERNAFDGLASLVELNLAHNNL 278

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 48.2 bits (115), Expect = 9e-06
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 2/83 (2%)

Query: 867 TSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSG 926
             ++   NN      +    L  L  L L +N++      A   L  L +L+L  N L+ 
Sbjct: 78  RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT- 136

Query: 927 QIPIQ-LANLTFLSFLNLSHNNL 948
            IP      L+ L  L L +N +
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPI 159

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 5/84 (5%)

Query: 866 FTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLS 925
           F+ +  +R      +P+ I    +   LNL +N +         +L  LE L L  N + 
Sbjct: 56  FSKVVCTRRGLSE-VPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR 112

Query: 926 GQIPIQ-LANLTFLSFLNLSHNNL 948
            QI +     L  L+ L L  N L
Sbjct: 113 -QIEVGAFNGLASLNTLELFDNWL 135

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 22/83 (26%), Positives = 35/83 (42%)

Query: 867 TSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSG 926
             ++ S N+F    P     L SL  L +  + ++    +A   L  L  L+L+ N+LS 
Sbjct: 221 EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS 280

Query: 927 QIPIQLANLTFLSFLNLSHNNLV 949
                   L +L  L+L HN   
Sbjct: 281 LPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 46.3 bits (110), Expect = 4e-05
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 887 LKSLHGLNLSQ-NALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSH 945
           + SL  L+L +   L      A   L  L+ L+L M ++   +P  L  L  L  L +S 
Sbjct: 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSG 227

Query: 946 NNL 948
           N+ 
Sbjct: 228 NHF 230

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.5 bits (108), Expect = 7e-05
 Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 887 LKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQ-LANLTFLSFLNLSH 945
           L SL+ L L  N LT     A   L +L  L L  N +   IP      +  L  L+L  
Sbjct: 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGE 180

Query: 946 NNLVGKIP 953
              +  I 
Sbjct: 181 LKKLEYIS 188

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 98.1 bits (245), Expect = 1e-22
 Identities = 57/233 (24%), Positives = 86/233 (36%), Gaps = 16/233 (6%)

Query: 287 TLDLSGNSLLQGSLP-DFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDG 345
           T       L   ++P   P  ++ + + L     S V   S    +NL+ L L       
Sbjct: 15  TTSCPQQGLQ--AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR 70

Query: 346 SIPTSLANLTQLVYLDLSFNKFVGPIPS--LHMSKNLTHLDLSYNALPGAISSTDWEHLS 403
               +   L  L  LDLS N  +  +     H    L  L L    L   +    +  L+
Sbjct: 71  IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLA 129

Query: 404 NLVYVDLRYNSLNGSIPGSLFS-LPMLQQLQLAENKFGGLIPE-FSNASSSALDTIDLSG 461
            L Y+ L+ N+L  ++P   F  L  L  L L  N+   +    F    S  LD + L  
Sbjct: 130 ALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS--LDRLLLHQ 186

Query: 462 NRLEGPIPMSIFD-LRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNL 513
           NR+   +    F  L  L  L L +N L+  +   A+  L  L  L L+ N  
Sbjct: 187 NRVAH-VHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 98.1 bits (245), Expect = 1e-22
 Identities = 47/244 (19%), Positives = 84/244 (34%), Gaps = 34/244 (13%)

Query: 371 IPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQ 430
           +P   +      + L  N +   + +  +    NL  + L  N L      +   L +L+
Sbjct: 26  VPV-GIPAASQRIFLHGNRI-SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 431 QLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFD-LRNLKILILSSNKLN 489
           QL L++N     +   +      L T+ L    L+  +   +F  L  L+ L L  N L 
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNALQ 142

Query: 490 GTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPN--LKNQS 547
             +     + L NL  L L  N ++                         +P    +   
Sbjct: 143 -ALPDDTFRDLGNLTHLFLHGNRISS------------------------VPERAFRGLH 177

Query: 548 KLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHS 607
            L  L L  N+++  +    +      L  L L  N LS+L    +++ L  +  L L+ 
Sbjct: 178 SLDRLLLHQNRVA-HVHPHAFR-DLGRLMTLYLFANNLSALP-TEALAPLRALQYLRLND 234

Query: 608 NQLQ 611
           N   
Sbjct: 235 NPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 86.2 bits (214), Expect = 1e-18
 Identities = 52/213 (24%), Positives = 83/213 (38%), Gaps = 13/213 (6%)

Query: 403 SNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGN 462
              V        L  ++P  +      Q++ L  N+    +P  S  +   L  + L  N
Sbjct: 11  EPKVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISH-VPAASFRACRNLTILWLHSN 66

Query: 463 RLEGPIPMSIFD-LRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLT-VNAGSD 520
            L   I  + F  L  L+ L LS N    +V  A    L  L  L L    L  +  G  
Sbjct: 67  VLAR-IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF 125

Query: 521 SSFPSQVRTLRLASCKLRVIPN--LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYL 578
               + ++ L L    L+ +P+   ++   L +L L  N+IS  +P   +  G  SL  L
Sbjct: 126 RGLAA-LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFR-GLHSLDRL 182

Query: 579 NLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQ 611
            L  N ++ +  P +  DL  +  L L +N L 
Sbjct: 183 LLHQNRVAHVH-PHAFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 79.3 bits (196), Expect = 3e-16
 Identities = 53/260 (20%), Positives = 84/260 (32%), Gaps = 53/260 (20%)

Query: 521 SSFPSQVRTLRLASCKLRVIPN--LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYL 578
              P+  + + L   ++  +P    +    L  L L  N ++  I    +  G   L+ L
Sbjct: 28  VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFT-GLALLEQL 85

Query: 579 NLSHNL-LSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPD 637
           +LS N  L S+  P +   L  +  L L    LQ                       +  
Sbjct: 86  DLSDNAQLRSVD-PATFHGLGRLHTLHLDRCGLQ----------------------ELGP 122

Query: 638 DIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGV 697
                    LF  L+                 L  L L  N L   +P    +    L  
Sbjct: 123 G--------LFRGLAA----------------LQYLYLQDNALQ-ALPDDTFRDLGNLTH 157

Query: 698 LNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTF 757
           L L GN +S      F G   L  L L+ N++    P +  +   L+ L L  N +    
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217

Query: 758 PWWLENISSLRVLVLRSNSF 777
              L  + +L+ L L  N +
Sbjct: 218 TEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 73.1 bits (180), Expect = 4e-14
 Identities = 52/225 (23%), Positives = 80/225 (35%), Gaps = 36/225 (16%)

Query: 104 LQSLNLAFNMFNATEIPSG-LGSLTNLTNLNLSNAGFAGQIPIQV-SGMTRLVTLDLSSL 161
            Q + L  N    + +P+    +  NLT L L +   A +I     +G+  L  LDLS  
Sbjct: 34  SQRIFLHGN--RISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSD- 89

Query: 162 NRFGAPLKLENPNLS----GLLQNLAELRELYLDGANISA--PGIEWCQALSSLVPKLQV 215
                     N  L          L  L  L+LD   +    PG         L   LQ 
Sbjct: 90  ----------NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG-----LFRGL-AALQY 133

Query: 216 LSLSSCYLSGPIHP-SLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGT 274
           L L    L   +   +   L +L+ + L  N + S          +L  L L  +R+   
Sbjct: 134 LYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-H 191

Query: 275 FPEKILQ-VHTLETLDLSGNSLLQGSLPD--FPKNSSLRTLMLSN 316
                 + +  L TL L  N+L   +LP        +L+ L L++
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNL--SALPTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 19/62 (30%), Positives = 26/62 (41%)

Query: 887 LKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHN 946
           L +L  L L  N ++     A   L  L+ L L  N ++   P    +L  L  L L  N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 947 NL 948
           NL
Sbjct: 212 NL 213

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 21/83 (25%), Positives = 26/83 (31%), Gaps = 1/83 (1%)

Query: 867 TSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSG 926
             I    N             ++L  L L  N L     +A   L  LE LDLS N    
Sbjct: 35  QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94

Query: 927 QIPIQ-LANLTFLSFLNLSHNNL 948
            +       L  L  L+L    L
Sbjct: 95  SVDPATFHGLGRLHTLHLDRCGL 117

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 5/88 (5%)

Query: 717 CGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNS 776
                + L+GN++      S   CRNL +L L +N +          ++ L  L L  N+
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 777 FYGNISCRENG--DSWPKLQIVDLASNN 802
               +   +        +L  + L    
Sbjct: 92  ---QLRSVDPATFHGLGRLHTLHLDRCG 116

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 3/64 (4%)

Query: 887 LKSLHGLNLSQNALTGPIPS-AIGNLQQLESLDLSMNHLSGQIPIQ-LANLTFLSFLNLS 944
           L  L  L+LS NA    +       L +L +L L    L  ++       L  L +L L 
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQ 137

Query: 945 HNNL 948
            N L
Sbjct: 138 DNAL 141

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 24/63 (38%), Positives = 31/63 (49%)

Query: 887 LKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHN 946
           L SL  L L QN +    P A  +L +L +L L  N+LS      LA L  L +L L+ N
Sbjct: 176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

Query: 947 NLV 949
             V
Sbjct: 236 PWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 4/78 (5%)

Query: 880 IPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQ-LANLTFL 938
           +P  I    +   + L  N ++    ++    + L  L L  N L+ +I       L  L
Sbjct: 26  VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALL 82

Query: 939 SFLNLSHNNLVGKIPIST 956
             L+LS N  +  +  +T
Sbjct: 83  EQLDLSDNAQLRSVDPAT 100

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  101 bits (254), Expect = 2e-22
 Identities = 61/376 (16%), Positives = 117/376 (31%), Gaps = 83/376 (22%)

Query: 456 TIDLSGNRLEGPIPMSIF-DLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLT 514
           + +   N + G      F      +   L     N  V L     ++  ++L+L+  NL+
Sbjct: 14  SQNSFYNTISG-TYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS 72

Query: 515 VNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVS 574
                  S P  +                    ++  L+++ N +   +P       +  
Sbjct: 73  -------SLPDNLP------------------PQITVLEITQNALI-SLPE---LPAS-- 101

Query: 575 LQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSS 634
           L+YL+   N LS+L  P   + L     LD+ +NQL                      + 
Sbjct: 102 LEYLDACDNRLSTL--PELPASL---KHLDVDNNQL----------------------TM 134

Query: 635 IPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEI 694
           +P+            +  NN +T ++PE       L VL +  N+L     T L ++ E 
Sbjct: 135 LPELPALLEYI----NADNNQLT-MLPELPTS---LEVLSVRNNQL-----TFLPELPES 181

Query: 695 LGVLNLRGNSLSGTLSVTFPGNCGLHT----LDLNGNQLGGTVPKSLANCRNLVVLDLGN 750
           L  L++  N L  +L      N              N++   +P+++ +      + L +
Sbjct: 182 LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILED 239

Query: 751 NKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQK 810
           N +       L   ++          F  +   +            D  +  F       
Sbjct: 240 NPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLA----DAVTAWFPENKQSD 295

Query: 811 CITSWKAMMSDEDEAQ 826
               W A   +E    
Sbjct: 296 VSQIWHAFEHEEHANT 311

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 98.5 bits (245), Expect = 2e-21
 Identities = 53/348 (15%), Positives = 114/348 (32%), Gaps = 58/348 (16%)

Query: 409 DLRYNSLNGSIPGSLFS-LPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGP 467
           +  YN+++       FS     ++  L        +        +    + L+   L   
Sbjct: 16  NSFYNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSS- 73

Query: 468 IPMSIFDLRNLKILILSSNKLNGTVQLAAI-QRLHNLAKLELSYNNLTVNAGSDSSFPSQ 526
           +P ++     + +L ++ N       L ++ +   +L  L+   N L+    +    P+ 
Sbjct: 74  LPDNLP--PQITVLEITQN------ALISLPELPASLEYLDACDNRLS----TLPELPAS 121

Query: 527 VRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLS 586
           ++ L + + +L ++P L   + L  ++  +NQ++  +P       +  L+ L++ +N L+
Sbjct: 122 LKHLDVDNNQLTMLPEL--PALLEYINADNNQLT-MLPE---LPTS--LEVLSVRNNQLT 173

Query: 587 SLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFT 646
            L  P     L     LD+ +N L                       S+P          
Sbjct: 174 FL--PELPESL---EALDVSTNLL----------------------ESLPAVPVRNHHSE 206

Query: 647 ---LFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGN 703
              +FF    N IT  IPE +        + L  N LS +     +         +  G 
Sbjct: 207 ETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSR-IRESLSQQTAQ--PDYHGP 262

Query: 704 SLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNN 751
            +  ++S            D             ++   +    +   N
Sbjct: 263 RIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHAN 310

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 84.6 bits (209), Expect = 5e-17
 Identities = 56/324 (17%), Positives = 96/324 (29%), Gaps = 51/324 (15%)

Query: 87  SISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQ 146
           SI   I+N+  L    +  +++  +      +  S             +       +   
Sbjct: 2   SIMLPINNNFSLSQNSFYNTISGTYA-----DYFSAWDKWEKQALPGENRNEAVSLLKE- 55

Query: 147 VSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAE-LRELYLDGANISAPGIEWCQA 205
              + +   L L+ LN            LS L  NL   +  L +    + +        
Sbjct: 56  -CLINQFSELQLNRLN------------LSSLPDNLPPQITVLEITQNALIS-------- 94

Query: 206 LSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLR 265
           L  L   L+ L      LS  +    A L+ L    +D N L   +PE  A    L  + 
Sbjct: 95  LPELPASLEYLDACDNRLST-LPELPASLKHL---DVDNNQLTM-LPELPA---LLEYIN 146

Query: 266 LSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPD 325
             +++L    PE       LE L +  N L    LP+ P++  L  L +S       LP 
Sbjct: 147 ADNNQLT-MLPELPTS---LEVLSVRNNQL--TFLPELPES--LEALDVSTNLLES-LPA 197

Query: 326 SIGNLKNLSRLDLALCYFDG----SIPTSLANLTQLVYLDLSFNKF-VGPIPSLHMSKNL 380
                 +    ++            IP ++ +L     + L  N        SL      
Sbjct: 198 VPVRNHHSEETEIFF-RCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQ 256

Query: 381 THLDLSYNALPGAISSTDWEHLSN 404
                       +    +  H   
Sbjct: 257 PDYHGPRIYFSMSDGQQNTLHRPL 280

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 64.2 bits (156), Expect = 1e-10
 Identities = 39/212 (18%), Positives = 76/212 (35%), Gaps = 30/212 (14%)

Query: 568 WEIGNVSLQYLNLSHNLLSSL--QRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLV- 624
             I N      N  +N +S        +        +   + N+    +           
Sbjct: 5   LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSEL 64

Query: 625 DYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKM 684
             +  + + S+PD++   ++      ++ N++   +PE       L  LD   N+LS  +
Sbjct: 65  QLNRLNLS-SLPDNLPPQIT---VLEITQNALI-SLPELPAS---LEYLDACDNRLS-TL 115

Query: 685 PTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCG-LHTLDLNGNQLGGTVPKSLANCRNL 743
           P     +      L++  N L+       P     L  ++ + NQL   +P+      +L
Sbjct: 116 PELPASLKH----LDVDNNQLT-----MLPELPALLEYINADNNQL-TMLPELP---TSL 162

Query: 744 VVLDLGNNKIRDTFPWWLENISSLRVLVLRSN 775
            VL + NN++    P   E   SL  L + +N
Sbjct: 163 EVLSVRNNQLT-FLP---ELPESLEALDVSTN 190

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 63.5 bits (154), Expect = 2e-10
 Identities = 45/282 (15%), Positives = 84/282 (29%), Gaps = 51/282 (18%)

Query: 650 SLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTL 709
             + N    ++ E  C       L L++  LS  +P  L      + VL +  N+L  +L
Sbjct: 43  GENRNEAVSLLKE--CLINQFSELQLNRLNLS-SLPDNLPPQ---ITVLEITQNALI-SL 95

Query: 710 SVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRV 769
                    L  LD   N+L  T+P+  A+ ++L   D+ NN++    P   E  + L  
Sbjct: 96  PELP---ASLEYLDACDNRLS-TLPELPASLKHL---DVDNNQLT-MLP---ELPALLEY 144

Query: 770 LVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNF 829
           +   +N            +    L+++ + +N          +T    +         + 
Sbjct: 145 INADNNQL------TMLPELPTSLEVLSVRNNQ---------LTFLPELPE-------SL 182

Query: 830 KDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKS 889
           + +      +                                  N     IPE I  L  
Sbjct: 183 EALDVSTNLLESL---------PAVPV-RNHHSEETEIFFRCRENRITH-IPENILSLDP 231

Query: 890 LHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQ 931
              + L  N L+  I  ++              + S     Q
Sbjct: 232 TCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.7 bits (121), Expect = 2e-06
 Identities = 22/110 (20%), Positives = 36/110 (32%), Gaps = 9/110 (8%)

Query: 873 RNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLES----LDLSMNHLSGQI 928
           RNN    +PE    L++L   ++S N L   +P+        E          N ++  I
Sbjct: 168 RNNQLTFLPELPESLEAL---DVSTNLLES-LPAVPVRNHHSEETEIFFRCRENRIT-HI 222

Query: 929 PIQLANLTFLSFLNLSHNNLVGKIPISTQLQSFLATSFEGNKGLCGPPLN 978
           P  + +L     + L  N L  +I  S   Q+                  
Sbjct: 223 PENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQ 272

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.4 bits (115), Expect = 1e-05
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 11/82 (13%)

Query: 867 TSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSG 926
           + +  +R N    +P+ +     +  L ++QNAL   +P    +L+    LD   N LS 
Sbjct: 62  SELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLPELPASLE---YLDACDNRLS- 113

Query: 927 QIPIQLANLTFLSFLNLSHNNL 948
            +P   A+L     L++ +N L
Sbjct: 114 TLPELPASLK---HLDVDNNQL 132

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.0 bits (114), Expect = 1e-05
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 12/82 (14%)

Query: 867 TSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSG 926
           T ++ ++N     +PE    L+ L   +   N L+  +P    +L+ L   D+  N L+ 
Sbjct: 83  TVLEITQNALI-SLPELPASLEYL---DACDNRLST-LPELPASLKHL---DVDNNQLT- 133

Query: 927 QIPIQLANLTFLSFLNLSHNNL 948
            +P   A L    ++N  +N L
Sbjct: 134 MLPELPALLE---YINADNNQL 152

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.3 bits (107), Expect = 9e-05
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 11/69 (15%)

Query: 880 IPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLS 939
           +PE    L+ +   N   N LT  +P    +L   E L +  N L+  +P    +L    
Sbjct: 135 LPELPALLEYI---NADNNQLTM-LPELPTSL---EVLSVRNNQLT-FLPELPESLE--- 183

Query: 940 FLNLSHNNL 948
            L++S N L
Sbjct: 184 ALDVSTNLL 192

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 96.7 bits (241), Expect = 1e-21
 Identities = 60/317 (18%), Positives = 110/317 (34%), Gaps = 48/317 (15%)

Query: 299 SLPDFPKN--SSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQ 356
           SL   P     ++++L LSN   + +    +    NL  L L     +     S ++L  
Sbjct: 42  SLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 101

Query: 357 LVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLN 416
           L +LDLS+N              L++L                + LS+L +++L  N   
Sbjct: 102 LEHLDLSYNY-------------LSNLS------SSWF-----KPLSSLTFLNLLGNPYK 137

Query: 417 GSIPGSLFS-LPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFD- 474
                SLFS L  LQ L++        I     A  + L+ +++  + L+          
Sbjct: 138 TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS-YEPKSLKS 196

Query: 475 LRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLAS 534
           ++N+  LIL   +    +    +    ++  LEL   +L       S   +         
Sbjct: 197 IQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTF--HFSELSTGETN----- 248

Query: 535 CKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSI 594
                  +L  +    N+ ++D  +   +           L  L  S N L S+      
Sbjct: 249 -------SLIKKFTFRNVKITDESLFQVMKLLN---QISGLLELEFSRNQLKSVPD-GIF 297

Query: 595 SDLSPITVLDLHSNQLQ 611
             L+ +  + LH+N   
Sbjct: 298 DRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 94.4 bits (235), Expect = 7e-21
 Identities = 59/269 (21%), Positives = 107/269 (39%), Gaps = 22/269 (8%)

Query: 236 SLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQ-VHTLETLDLSGNS 294
           ++  + L  N +       L    NL +L L+ + +N T  E     + +LE LDLS N 
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNY 111

Query: 295 LLQGSLPD--FPKNSSLRTLMLSNTNFSGVLPDSI-GNLKNLSRLDLALCYFDGSIPT-S 350
           L   +L    F   SSL  L L    +  +   S+  +L  L  L +        I    
Sbjct: 112 L--SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169

Query: 351 LANLTQLVYLDLSFNKFVG-PIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVD 409
            A LT L  L++  +        SL   +N++HL L        +     +  S++  ++
Sbjct: 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLE 228

Query: 410 LRYNSLNGSIPGSLFS--------LPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSG 461
           LR   L+      L +            + +++ +     ++   +  S   L  ++ S 
Sbjct: 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISG--LLELEFSR 286

Query: 462 NRLEGPIPMSIFD-LRNLKILILSSNKLN 489
           N+L+  +P  IFD L +L+ + L +N  +
Sbjct: 287 NQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 92.9 bits (231), Expect = 2e-20
 Identities = 52/272 (19%), Positives = 106/272 (38%), Gaps = 19/272 (6%)

Query: 521 SSFPSQVRTLRLASCKLRVIPN--LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYL 578
           S     V++L L++ ++  I N  L+    L  L L+ N I+  I    +     SL++L
Sbjct: 48  SGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFS-SLGSLEHL 105

Query: 579 NLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQ----GNIPYPPPKAVLVDYSNNSFTSS 634
           +LS+N LS+L        LS +T L+L  N  +     ++     K  ++   N    + 
Sbjct: 106 DLSYNYLSNLS-SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK 164

Query: 635 IPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEI 694
           I       ++F     +  + +    P++L   + +  L L   +    +    + ++  
Sbjct: 165 IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSS 223

Query: 695 LGVLNLRGN--------SLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVL 746
           +  L LR           LS   + +         + +    L   V K L     L+ L
Sbjct: 224 VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLEL 282

Query: 747 DLGNNKIRDTFPWWLENISSLRVLVLRSNSFY 778
           +   N+++       + ++SL+ + L +N + 
Sbjct: 283 EFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 91.3 bits (227), Expect = 7e-20
 Identities = 51/279 (18%), Positives = 111/279 (39%), Gaps = 25/279 (8%)

Query: 284 TLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYF 343
            +++LDLS N +   S  D  +  +L+ L+L++   + +  DS  +L +L  LDL+  Y 
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112

Query: 344 DGSIPTSL-ANLTQLVYLDLSFNKF--VGPIPSLHMSKNLTHLDLSYNALPGAISSTDWE 400
             ++ +S    L+ L +L+L  N +  +G          L  L +        I   D+ 
Sbjct: 113 -SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171

Query: 401 HLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLS 460
            L+ L  +++  + L    P SL S+  +  L L   +   L+ E     +S+++ ++L 
Sbjct: 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH-ILLLEIFVDVTSSVECLELR 230

Query: 461 GNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSD 520
              L+      +                  T +  ++ +      ++++  +L       
Sbjct: 231 DTDLDTFHFSELS-----------------TGETNSLIKKFTFRNVKITDESLFQVMKLL 273

Query: 521 SSFPSQVRTLRLASCKLRVIPN--LKNQSKLFNLDLSDN 557
           +     +  L  +  +L+ +P+      + L  + L  N
Sbjct: 274 NQIS-GLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 86.7 bits (215), Expect = 3e-18
 Identities = 53/283 (18%), Positives = 88/283 (31%), Gaps = 26/283 (9%)

Query: 403 SNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGN 462
             +  +DL  N +       L     LQ L L  N     I E S +S  +L+ +DLS N
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI-NTIEEDSFSSLGSLEHLDLSYN 110

Query: 463 RLEGPIPMSIFD-LRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDS 521
            L   +  S F  L +L  L L  N      + +    L  L  L +   +         
Sbjct: 111 YLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169

Query: 522 -SFPSQVRTLRLASCKLRVIPN--LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYL 578
            +  + +  L + +  L+      LK+   + +L L   Q    +     +    S++ L
Sbjct: 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVD-VTSSVECL 227

Query: 579 NLSHNLLSSLQRPFSISDLSPITVLDL-HSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPD 637
            L    L +       S+LS      L      +            V  ++ S    +  
Sbjct: 228 ELRDTDLDTFH----FSELSTGETNSLIKKFTFR-----------NVKITDESLF-QVMK 271

Query: 638 DIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKL 680
            +            S N +  V      R   L  + L  N  
Sbjct: 272 LLNQISGLLE-LEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 75.5 bits (186), Expect = 1e-14
 Identities = 58/303 (19%), Positives = 105/303 (34%), Gaps = 52/303 (17%)

Query: 68  SGVDCDEAGRVIGLDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSG-LGSL 126
           + + CD  G   G   S  SI +G+  +        ++SL+L+ N    T I +  L   
Sbjct: 26  ASLSCDRNGICKGSSGSLNSIPSGLTEA--------VKSLDLSNN--RITYISNSDLQRC 75

Query: 127 TNLTNLNLSNAGFAGQIPIQV-SGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAEL 185
            NL  L L++ G    I     S +  L  LDLS  N     L   +       + L+ L
Sbjct: 76  VNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSY-NY----LSNLSS---SWFKPLSSL 126

Query: 186 RELYLDG---------------ANISAPGIEWCQALSSL-------VPKLQVLSLSSCYL 223
             L L G                 +    +      + +       +  L+ L + +  L
Sbjct: 127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186

Query: 224 SGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKI---- 279
                 SL  +Q++S + L     +  +  F+    ++  L L  + L+     ++    
Sbjct: 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE 246

Query: 280 ----LQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSR 335
               ++  T   + ++  SL Q  +    + S L  L  S      V       L +L +
Sbjct: 247 TNSLIKKFTFRNVKITDESLFQV-MKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQK 305

Query: 336 LDL 338
           + L
Sbjct: 306 IWL 308

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 67.8 bits (166), Expect = 5e-12
 Identities = 39/238 (16%), Positives = 77/238 (32%), Gaps = 30/238 (12%)

Query: 573 VSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFT 632
            +++ L+LS+N ++ +     +     +  L L SN +                      
Sbjct: 52  EAVKSLDLSNNRITYIS-NSDLQRCVNLQALVLTSNGIN--------------------- 89

Query: 633 SSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMS 692
            +I +D  + +       LS N ++ +          L  L+L  N       T L    
Sbjct: 90  -TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHL 148

Query: 693 EILGVLNLRGNSLSGTLSV-TFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNN 751
             L +L +        +    F G   L  L+++ + L    PKSL + +N+  L L   
Sbjct: 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208

Query: 752 KIRDTFPWWLENISSLRVLVLRSNSFYGNISCR------ENGDSWPKLQIVDLASNNF 803
           +       +++  SS+  L LR                  +       + V +   + 
Sbjct: 209 QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 66.7 bits (163), Expect = 1e-11
 Identities = 56/305 (18%), Positives = 99/305 (32%), Gaps = 31/305 (10%)

Query: 624 VDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGK 683
              S+ S  S IP  +           LSNN IT +    L R   L  L L+ N ++  
Sbjct: 36  CKGSSGSLNS-IPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI 91

Query: 684 MPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSL-ANCRN 742
                  +   L  L+L  N LS   S  F     L  L+L GN        SL ++   
Sbjct: 92  EEDSFSSLGS-LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK 150

Query: 743 LVVLDLGNN-KIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENG--DSWPKLQIVDLA 799
           L +L +GN              ++ L  L + ++    ++   E     S   +  + L 
Sbjct: 151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS----DLQSYEPKSLKSIQNVSHLILH 206

Query: 800 SNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMEL 859
                             +  D     S+ + +      +  F++ +  T  +  L    
Sbjct: 207 MKQ---------HILLLEIFVDV---TSSVECLELRDTDLDTFHFSELSTGETNSLIK-- 252

Query: 860 VKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDL 919
                 F ++  +  +    + + + ++  L  L  S+N L          L  L+ + L
Sbjct: 253 ---KFTFRNVKITDESL-FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWL 308

Query: 920 SMNHL 924
             N  
Sbjct: 309 HTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 44/233 (18%), Positives = 76/233 (32%), Gaps = 53/233 (22%)

Query: 718 GLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSF 777
            + +LDL+ N++       L  C NL  L L +N I         ++ SL  L L  N  
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-- 110

Query: 778 YGNISCRENG--DSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFE 835
              +S   +        L  ++L  N +                      ++  +   F 
Sbjct: 111 --YLSNLSSSWFKPLSSLTFLNLLGNPY----------------------KTLGETSLFS 146

Query: 836 FLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNL 895
            L                 L++  V  +  FT I   R +F G        L  L  L +
Sbjct: 147 HLT---------------KLQILRVGNMDTFTKI--QRKDFAG--------LTFLEELEI 181

Query: 896 SQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNL 948
             + L    P ++ ++Q +  L L M      + I +   + +  L L   +L
Sbjct: 182 DASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 234

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 94.2 bits (234), Expect = 4e-21
 Identities = 49/269 (18%), Positives = 88/269 (32%), Gaps = 22/269 (8%)

Query: 262 TSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKN---SSLRTLMLSNTN 318
             L+   +  +      I++  +L+ L +    +    L    +    S L+ L L N  
Sbjct: 47  YLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE 106

Query: 319 FSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLAN------LTQLVYLDLSFNKF-VGPI 371
            +G  P  +          L L     +   +            L  L ++         
Sbjct: 107 VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166

Query: 372 PSLHMSKNLTHLDLSYN------ALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFS 425
             + +   L+ LDLS N       L  A+    +  L  L   +    + +G       +
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA 226

Query: 426 LPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSS 485
              LQ L L+ N         S    S L++++LS   L+  +P  +     L +L LS 
Sbjct: 227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGLP--AKLSVLDLSY 283

Query: 486 NKLNGTVQLAAIQRLHNLAKLELSYNNLT 514
           N+L+      +   L  +  L L  N   
Sbjct: 284 NRLDR---NPSPDELPQVGNLSLKGNPFL 309

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.2 bits (195), Expect = 5e-16
 Identities = 51/267 (19%), Positives = 94/267 (35%), Gaps = 24/267 (8%)

Query: 554 LSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLS--SLQRPFSISDLSPITVLDLHSNQLQ 611
           L       ++  +   I ++SL+ L +    +    L     +  +S +  L L + ++ 
Sbjct: 49  LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108

Query: 612 GNIPYPPPKAVL-----VDYSNNSFTS--SIPDDIGNFVSFTL-FFSLSNNSITGVIPET 663
           G  P P  +A       ++  N S+ +  +   ++  ++   L   S++         E 
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168

Query: 664 LCRAKYLLVLDLSKNKLSGKMP----TCLIKMS--EILGVLNLRGNSLSGTLSVTFPGNC 717
           +     L  LDLS N   G+       C +K    ++L + N    + SG  S       
Sbjct: 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228

Query: 718 GLHTLDLNGNQLGGTVPKSL-ANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNS 776
            L  LDL+ N L              L  L+L    ++          + L VL L  N 
Sbjct: 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYN- 284

Query: 777 FYGNISCRENGDSWPKLQIVDLASNNF 803
               +    + D  P++  + L  N F
Sbjct: 285 ---RLDRNPSPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.0 bits (192), Expect = 1e-15
 Identities = 72/322 (22%), Positives = 110/322 (34%), Gaps = 31/322 (9%)

Query: 60  QSNDCCTWSGVDCDEAGRVIGLDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEI 119
           + +  C +S    D +     L  ++  +  G  +   L     L+ ++   ++   T+I
Sbjct: 10  EESCSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYL-----LKRVDTEADLGQFTDI 64

Query: 120 PSGLGSLTNLTNLNLSNAGFAGQIPIQVS---GMTRLVTLDLSSLNRFGAPLKLENPNLS 176
              L    +L  L +  A    +I        G++ L  L L +L   G           
Sbjct: 65  IKSL----SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTG------TAPPP 114

Query: 177 GLLQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQS 236
            L     +L  L L   + +       +    L P L+VLS++  +        +    +
Sbjct: 115 LLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA 174

Query: 237 LSVIRLDQNDLLSPVPEFLA----DFFNLTSLRLSH---SRLNGTFPEKILQVHTLETLD 289
           LS + L  N  L       A     F  L  L L +      +G           L+ LD
Sbjct: 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLD 234

Query: 290 LSGNSLLQG-SLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIP 348
           LS NSL      P     S L +L LS T    V     G    LS LDL+    D   P
Sbjct: 235 LSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK---GLPAKLSVLDLSYNRLD-RNP 290

Query: 349 TSLANLTQLVYLDLSFNKFVGP 370
            S   L Q+  L L  N F+  
Sbjct: 291 -SPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 72.6 bits (178), Expect = 9e-14
 Identities = 54/295 (18%), Positives = 85/295 (28%), Gaps = 40/295 (13%)

Query: 475 LRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLAS 534
            R+L+ L+   +      Q   I +  +L +L +    +             +R L    
Sbjct: 42  GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARI-----PSRILFGALRVL---- 92

Query: 535 CKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSI 594
                       S L  L L + +++G  P  + E     L  LNL +   ++      +
Sbjct: 93  ----------GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR--DAWL 140

Query: 595 SDLSP-----ITVLDLHSNQLQG---NIPYPPPKAVLVDYSNNSFTSSIP---DDIGNFV 643
           ++L       + VL +                P    +D S+N                 
Sbjct: 141 AELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200

Query: 644 SFTLFFSLSNN---SITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNL 700
                 +L N    + +GV          L  LDLS N L              L  LNL
Sbjct: 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL 260

Query: 701 RGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRD 755
               L             L  LDL+ N+L    P        +  L L  N   D
Sbjct: 261 SFTGLKQVPKGLPA---KLSVLDLSYNRL-DRNPSPD-ELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 72.2 bits (177), Expect = 1e-13
 Identities = 48/269 (17%), Positives = 82/269 (30%), Gaps = 28/269 (10%)

Query: 374 LHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGS---LFSLPMLQ 430
               ++L +L    +        TD     +L  + +R   +   I      +  +  LQ
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98

Query: 431 QLQLAENKFGGLIP-EFSNASSSALDTIDLSGNRLEGPIP----MSIFDLRNLKILILSS 485
           +L L   +  G  P     A+   L+ ++L              +  +    LK+L ++ 
Sbjct: 99  ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ 158

Query: 486 NKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKN 545
                      ++    L+ L+LS N      G  S+                       
Sbjct: 159 AHSL-NFSCEQVRVFPALSTLDLSDNPELGERGLISALC------------------PLK 199

Query: 546 QSKLFNLDLSDNQISGEIPNWVWEIGN-VSLQYLNLSHNLLSSLQRPFSISDLSPITVLD 604
              L  L L +  +              V LQ L+LSHN L       S    S +  L+
Sbjct: 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259

Query: 605 LHSNQLQGNIPYPPPKAVLVDYSNNSFTS 633
           L    L+      P K  ++D S N    
Sbjct: 260 LSFTGLKQVPKGLPAKLSVLDLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 65.7 bits (160), Expect = 2e-11
 Identities = 64/323 (19%), Positives = 98/323 (30%), Gaps = 33/323 (10%)

Query: 637 DDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILG 696
               NF      +S + N +     E     + L  L    +  +       I  S  L 
Sbjct: 12  SCSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLK 71

Query: 697 VLNLRGNSLSGTLSVTFPGNCG---LHTLDLNGNQLGGTVPKSLANC--RNLVVLDLGNN 751
            L +R   +   +        G   L  L L   ++ GT P  L      +L +L+L N 
Sbjct: 72  RLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV 131

Query: 752 KIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSW---PKLQIVDLASNNFGGRVP 808
               T   WL  +       L+  S     S   + +     P L  +DL+ N   G   
Sbjct: 132 SW-ATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190

Query: 809 QKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTS 868
                           A    K    + L + +   +     T  G+   L         
Sbjct: 191 -------------LISALCPLKFPTLQVLALRNAGME-----TPSGVCSALAAARVQLQG 232

Query: 869 IDFSRNNFDGPIPEEI-GRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQ 927
           +D S N+               L+ LNLS   L   +P  +    +L  LDLS N L   
Sbjct: 233 LDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGL--PAKLSVLDLSYNRLDR- 288

Query: 928 IPIQLANLTFLSFLNLSHNNLVG 950
            P     L  +  L+L  N  + 
Sbjct: 289 NP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 52.6 bits (126), Expect = 3e-07
 Identities = 45/241 (18%), Positives = 74/241 (30%), Gaps = 28/241 (11%)

Query: 727 NQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWW-LENISSLRVLVLRSNSFYGNISCRE 785
           N LG    +     R+L  L    +   D   +  +    SL+ L +R+      I    
Sbjct: 29  NCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGA 88

Query: 786 -NGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYY 844
                   LQ + L +    G  P              +    +   ++   +  A    
Sbjct: 89  LRVLGISGLQELTLENLEVTGTAPP----------PLLEATGPDLNILNLRNVSWATRDA 138

Query: 845 QDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPI 904
             A     +      +K+LSI      ++ +      E++    +L  L+LS N   G  
Sbjct: 139 WLA---ELQQWLKPGLKVLSI------AQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189

Query: 905 -------PSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLVGKIPISTQ 957
                  P     LQ L   +  M   SG      A    L  L+LSHN+L       + 
Sbjct: 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249

Query: 958 L 958
            
Sbjct: 250 D 250

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 47/267 (17%), Positives = 83/267 (31%), Gaps = 42/267 (15%)

Query: 650 SLSNNSITGVIPETLCRA---KYLLVLDLSKNKLSGKMPTCLIKMSEI-LGVLNLRGNSL 705
           ++    I   I     R      L  L L   +++G  P  L++ +   L +LNLR  S 
Sbjct: 74  TVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW 133

Query: 706 SGTLS----VTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWW- 760
           +   +    +      GL  L +          + +     L  LDL +N          
Sbjct: 134 ATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193

Query: 761 ---LENISSLRVLVLRSNSFYG-NISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWK 816
                   +L+VL LR+      +  C     +  +LQ +DL+ N+            W 
Sbjct: 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD-AAGAPSCDWP 252

Query: 817 AMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNF 876
           + +                 L ++             GL+     + +  + +D S N  
Sbjct: 253 SQL---------------NSLNLS-----------FTGLKQVPKGLPAKLSVLDLSYNRL 286

Query: 877 DGPIPEEIGRLKSLHGLNLSQNALTGP 903
           D   P     L  +  L+L  N     
Sbjct: 287 DR-NPS-PDELPQVGNLSLKGNPFLDS 311

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 95.9 bits (238), Expect = 2e-20
 Identities = 64/366 (17%), Positives = 114/366 (31%), Gaps = 30/366 (8%)

Query: 285 LETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFD 344
           +         + Q  +      +      L   + +  +      L ++ ++        
Sbjct: 1   MGETITVSTPIKQ--IFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56

Query: 345 GSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWE---H 401
            S+   +  L  +  L L+ NK +  I  L   KNL  L L  N +       D      
Sbjct: 57  -SV-QGIQYLPNVTKLFLNGNK-LTDIKPLTNLKNLGWLFLDENKI------KDLSSLKD 107

Query: 402 LSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSN-ASSSALDTIDLS 460
           L  L  + L +N ++  I G L  LP L+ L L  NK    I + +  +  + LDT+ L 
Sbjct: 108 LKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNK----ITDITVLSRLTKLDTLSLE 161

Query: 461 GNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSD 520
            N++   +P++   L  L+ L LS N ++    L A+  L NL  LEL          + 
Sbjct: 162 DNQISDIVPLA--GLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINH 216

Query: 521 SSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNL 580
            S      T++     L     + +       ++  +    E  N V  I    +     
Sbjct: 217 QSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLP--EFTNEVSFIFYQPVTIGKA 274

Query: 581 SHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIG 640
                  + +P          V                                   + G
Sbjct: 275 KARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPTKQGYVFKGWYTEKNGG 334

Query: 641 NFVSFT 646
           +  +F 
Sbjct: 335 HEWNFN 340

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 90.9 bits (225), Expect = 7e-19
 Identities = 53/320 (16%), Positives = 103/320 (32%), Gaps = 72/320 (22%)

Query: 478 LKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKL 537
           +   I  S  +    Q+          K  L   ++T +A + +   S +  +   +  +
Sbjct: 1   MGETITVSTPIK---QIFPDDAFAETIKDNLKKKSVT-DAVTQNELNS-IDQIIANNSDI 55

Query: 538 RVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDL 597
           + +  ++    +  L L+ N+++ +I          +L +L L  N +  L    S+ DL
Sbjct: 56  KSVQGIQYLPNVTKLFLNGNKLT-DIKPLT---NLKNLGWLFLDENKIKDLS---SLKDL 108

Query: 598 SPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLF--FSLSNNS 655
             +  L L  N +                           DI   V         L NN 
Sbjct: 109 KKLKSLSLEHNGIS--------------------------DINGLVHLPQLESLYLGNNK 142

Query: 656 ITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPG 715
           IT +    L R   L  L L  N++S         +  + G+  L+              
Sbjct: 143 ITDI--TVLSRLTKLDTLSLEDNQIS--------DIVPLAGLTKLQ-------------- 178

Query: 716 NCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSN 775
                 L L+ N +  +  ++LA  +NL VL+L + +  +       N+     +     
Sbjct: 179 -----NLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 231

Query: 776 SFYGNISCRENGDSWPKLQI 795
           S         +   + K  +
Sbjct: 232 SLV-TPEIISDDGDYEKPNV 250

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 73.6 bits (180), Expect = 2e-13
 Identities = 54/285 (18%), Positives = 100/285 (35%), Gaps = 37/285 (12%)

Query: 85  EESISAG--IDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQ 142
            E+I+    I    P  +       NL     + T+       L ++  +  +N+     
Sbjct: 2   GETITVSTPIKQIFPDDAFAETIKDNLKKK--SVTDA-VTQNELNSIDQIIANNSDIKSV 58

Query: 143 IPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEW 202
             IQ   +  +  L L+  N+      ++       L NL  L  L+LD   I    +  
Sbjct: 59  QGIQ--YLPNVTKLFLNG-NKL---TDIKP------LTNLKNLGWLFLDENKIKD--LS- 103

Query: 203 CQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLT 262
             +L  L  KL+ LSL    +S      L  L  L  + L  N +       L+    L 
Sbjct: 104 --SLKDL-KKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLD 156

Query: 263 SLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGV 322
           +L L  +++  +    +  +  L+ L LS N +    L       +L  L L +      
Sbjct: 157 TLSLEDNQI--SDIVPLAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNK 212

Query: 323 LPDSIGNLKNLSRLDLALCYFDGSI--PTSLANLTQLVYLDLSFN 365
             +   NL   + +       DGS+  P  +++       ++ ++
Sbjct: 213 PINHQSNLVVPNTVKN----TDGSLVTPEIISDDGDYEKPNVKWH 253

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.9 bits (173), Expect = 1e-12
 Identities = 48/261 (18%), Positives = 102/261 (39%), Gaps = 33/261 (12%)

Query: 78  VIGLDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNA 137
            I  +L ++S++    ++     L  +  +    +  +   +  G+  L N+T L L+  
Sbjct: 23  TIKDNLKKKSVT----DAVTQNELNSIDQIIANNS--DIKSV-QGIQYLPNVTKLFLNGN 75

Query: 138 GFAGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISA 197
                 P+  + +  L  L L   N+      L +      L++L +L+ L L+   IS 
Sbjct: 76  KLTDIKPL--TNLKNLGWLFLDE-NKI---KDLSS------LKDLKKLKSLSLEHNGISD 123

Query: 198 PGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLAD 257
             I     L  L P+L+ L L +  ++      L++L  L  + L+ N +       LA 
Sbjct: 124 --IN---GLVHL-PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD--IVPLAG 173

Query: 258 FFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNT 317
              L +L LS + +  +    +  +  L+ L+L     L   +          T+  ++ 
Sbjct: 174 LTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 231

Query: 318 NFSGVLPDSIGNLKNLSRLDL 338
           +     P+ I +  +  + ++
Sbjct: 232 SLVT--PEIISDDGDYEKPNV 250

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 66.3 bits (161), Expect = 3e-11
 Identities = 47/258 (18%), Positives = 88/258 (34%), Gaps = 43/258 (16%)

Query: 698 LNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTF 757
            NL+  S++    VT      +  +  N + +     + +    N+  L L  NK+ D  
Sbjct: 26  DNLKKKSVTDA--VTQNELNSIDQIIANNSDI--KSVQGIQYLPNVTKLFLNGNKLTDIK 81

Query: 758 PWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKA 817
           P  L N+ +L  L L  N     I    +     KL+ + L  N          I+    
Sbjct: 82  P--LTNLKNLGWLFLDEN----KIKDLSSLKDLKKLKSLSLEHNG---------ISDING 126

Query: 818 MMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFD 877
           +           + ++    KI D               + ++  L+   ++    N   
Sbjct: 127 L-----VHLPQLESLYLGNNKITD---------------ITVLSRLTKLDTLSLEDNQIS 166

Query: 878 GPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTF 937
                 +  L  L  L LS+N ++     A+  L+ L+ L+L       +     +NL  
Sbjct: 167 DI--VPLAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLVV 222

Query: 938 LSFLNLSHNNLVGKIPIS 955
            + +  +  +LV    IS
Sbjct: 223 PNTVKNTDGSLVTPEIIS 240

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.4 bits (143), Expect = 5e-09
 Identities = 41/230 (17%), Positives = 75/230 (32%), Gaps = 43/230 (18%)

Query: 719 LHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFY 778
           +         +    P         +  +L    + D        ++S+  ++  ++   
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNS--- 53

Query: 779 GNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLK 838
            +I   +     P +  + L  N          +T  K           N   +  +  K
Sbjct: 54  -DIKSVQGIQYLPNVTKLFLNGNK---------LTDIKP-----LTNLKNLGWLFLDENK 98

Query: 839 IADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQN 898
           I D             L+ +L K+     S+    N         +  L  L  L L  N
Sbjct: 99  IKDL----------SSLK-DLKKL----KSLSLEHNGIS--DINGLVHLPQLESLYLGNN 141

Query: 899 ALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNL 948
            +T    + +  L +L++L L  N +S  +P  LA LT L  L LS N++
Sbjct: 142 KIT--DITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 93.1 bits (232), Expect = 6e-20
 Identities = 93/503 (18%), Positives = 162/503 (32%), Gaps = 108/503 (21%)

Query: 127 TNLTNLNLSNAGF-AGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAEL 185
            ++ +L++        +    +  + +   + L               ++S  L+    L
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDD-CGLTEA---RCKDISSALRVNPAL 58

Query: 186 RELYLDGANISAPGIE-WCQALSSLVPKLQVLSLSSCYLS----GPIHPSLAKLQSLSVI 240
            EL L    +   G+    Q L +   K+Q LSL +C L+    G +  +L  L +L  +
Sbjct: 59  AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 118

Query: 241 RLDQNDLLSPVPEFLADFF-----NLTSLRLSHSRLNGTFPEKILQV----HTLETLDLS 291
            L  N L     + L +        L  L+L +  L+    E +  V       + L +S
Sbjct: 119 HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 178

Query: 292 GNSL-------LQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFD 344
            N +       L   L D      L  L L +   +    D+  +L  +           
Sbjct: 179 NNDINEAGVRVLCQGLKD--SPCQLEALKLESCGVT---SDNCRDLCGI----------- 222

Query: 345 GSIPTSLANLTQLVYLDLSFNKF----VGPIPS--LHMSKNLTHLDLSYNALPGAISSTD 398
                 +A+   L  L L  NK     +  +    LH S  L  L +        I++  
Sbjct: 223 ------VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC----GITAKG 272

Query: 399 WEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGG----LIPEFSNASSSAL 454
              L                    L +   L++L LA N+ G     L+ E        L
Sbjct: 273 CGDLCR-----------------VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL 315

Query: 455 DTIDLSGNRLEGPIPMSIFDL----RNLKILILSSNKL--NGTVQLAA--IQRLHNLAKL 506
           +++ +               +    R L  L +S+N+L   G  +L     Q    L  L
Sbjct: 316 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL 375

Query: 507 ELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNW 566
            L+  +++ ++ S            LA+        L     L  LDLS+N +       
Sbjct: 376 WLADCDVSDSSCSS-----------LAAT-------LLANHSLRELDLSNNCLGDAGILQ 417

Query: 567 VWE---IGNVSLQYLNLSHNLLS 586
           + E        L+ L L     S
Sbjct: 418 LVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 86.6 bits (215), Expect = 7e-18
 Identities = 76/433 (17%), Positives = 130/433 (30%), Gaps = 82/433 (18%)

Query: 235 QSLSVIRLDQNDL-LSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQV----HTLETLD 289
             +  + +   +L  +   E L        +RL    L     + I         L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 290 LSGNSL-------LQGSLPDFPKNSSLRTLMLSNTNFS----GVLPDSIGNLKNLSRLDL 338
           L  N L       +   L     +  ++ L L N   +    GVL  ++  L  L  L L
Sbjct: 63  LRSNELGDVGVHCVLQGLQT--PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 339 ALCYFDGSIPTSLA-----NLTQLVYLDLSFNKFVGPI------PSLHMSKNLTHLDLSY 387
           +      +    L         +L  L L +               L    +   L +S 
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL-SAASCEPLASVLRAKPDFKELTVSN 179

Query: 388 NAL--PGA--ISSTDWEHLSNLVYVDLRYNSLN----GSIPGSLFSLPMLQQLQLAENKF 439
           N +   G   +     +    L  + L    +       + G + S   L++L L  NK 
Sbjct: 180 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239

Query: 440 GG----LIPEFSNASSSALDTIDLSGNRLEGP----IPMSIFDLRNLKILILSSNKL--N 489
           G      +       SS L T+ +    +       +   +    +LK L L+ N+L   
Sbjct: 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299

Query: 490 GTVQLAAIQRLHN--LAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQS 547
           G   L          L  L +   + T    S             +S        L    
Sbjct: 300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSH-----------FSSV-------LAQNR 341

Query: 548 KLFNLDLSDNQISGEIPNWVWE---IGNVSLQYLNLSHNLLSSLQRPFSISDLSP----- 599
            L  L +S+N++       + +        L+ L L+   +S      S S L+      
Sbjct: 342 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS----DSSCSSLAATLLAN 397

Query: 600 --ITVLDLHSNQL 610
             +  LDL +N L
Sbjct: 398 HSLRELDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 85.8 bits (213), Expect = 2e-17
 Identities = 86/497 (17%), Positives = 157/497 (31%), Gaps = 104/497 (20%)

Query: 306 NSSLRTLMLSNTNFS-GVLPDSIGNLKNLSRLDLALCYFD----GSIPTSLANLTQLVYL 360
           +  +++L +     S     + +  L+    + L  C         I ++L     L  L
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 361 DLSFNKFVGP-IPSL-----HMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNS 414
           +L  N+     +  +       S  +  L L        ++      LS+          
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC----CLTGAGCGVLSST--------- 108

Query: 415 LNGSIPGSLFSLPMLQQLQLAENKFGG----LIPEFSNASSSALDTIDLSGNRLEGPIPM 470
                   L +LP LQ+L L++N  G     L+ E        L+ + L    L      
Sbjct: 109 --------LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160

Query: 471 SIFDL----RNLKILILSSNKLN--GTVQLAAIQRLHN--LAKLELSYNNLTVNAGSDSS 522
            +  +     + K L +S+N +N  G   L    +     L  L+L    +T +   D  
Sbjct: 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD-- 218

Query: 523 FPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEI---GNVSLQYLN 579
                    L          + +++ L  L L  N++       +       +  L+ L 
Sbjct: 219 ---------LCGI-------VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262

Query: 580 LSHNLLSSLQRPF---SISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIP 636
           +    +++         +     +  L L  N+L              D        ++ 
Sbjct: 263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNELG-------------DEGARLLCETLL 309

Query: 637 DDIGNFVSFTL-FFSLSNNSITGV----IPETLCRAKYLLVLDLSKNKL--SGKMPTC-- 687
           +         L    + + S T          L + ++LL L +S N+L  +G    C  
Sbjct: 310 E-----PGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 364

Query: 688 LIKMSEILGVLNLRGNSLS----GTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLA----- 738
           L +   +L VL L    +S     +L+ T   N  L  LDL+ N LG      L      
Sbjct: 365 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 424

Query: 739 NCRNLVVLDLGNNKIRD 755
               L  L L +    +
Sbjct: 425 PGCLLEQLVLYDIYWSE 441

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 85.0 bits (211), Expect = 3e-17
 Identities = 86/449 (19%), Positives = 141/449 (31%), Gaps = 86/449 (19%)

Query: 376 MSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLN----GSIPGSLFSLPMLQQ 431
           MS ++  LD+    L  A  +     L     V L    L       I  +L   P L +
Sbjct: 1   MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 432 LQLAENKFGG----LIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDL----RNLKILIL 483
           L L  N+ G      + +     S  +  + L    L G     +         L+ L L
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 484 SSNKLN--GTVQLAAIQRLHN--LAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRV 539
           S N L   G   L          L KL+L Y +L+  +              LAS     
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP-----------LASV---- 165

Query: 540 IPNLKNQSKLFNLDLSDNQISGEIPNWVWEI---GNVSLQYLNLSHNLLSSLQRPFSISD 596
              L+ +     L +S+N I+      + +        L+ L L    ++      +  D
Sbjct: 166 ---LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT----SDNCRD 218

Query: 597 LSP-------ITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFF 649
           L         +  L L SN+L                  +   + +   + +  S     
Sbjct: 219 LCGIVASKASLRELALGSNKLG-----------------DVGMAELCPGLLHPSSRLRTL 261

Query: 650 SLSNNSITGV----IPETLCRAKYLLVLDLSKNKLSGK----MPTCLIKMSEILGVLNLR 701
            +    IT      +   L   + L  L L+ N+L  +    +   L++    L  L ++
Sbjct: 262 WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321

Query: 702 GNSLSGT----LSVTFPGNCGLHTLDLNGNQLGGTVPKSLA-----NCRNLVVLDLGNNK 752
             S +       S     N  L  L ++ N+L     + L          L VL L +  
Sbjct: 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381

Query: 753 IRDT----FPWWLENISSLRVLVLRSNSF 777
           + D+        L    SLR L L +N  
Sbjct: 382 VSDSSCSSLAATLLANHSLRELDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 79.6 bits (197), Expect = 1e-15
 Identities = 81/516 (15%), Positives = 154/516 (29%), Gaps = 112/516 (21%)

Query: 284 TLETLDLSGNSLLQGSLPDF-PKNSSLRTLMLSNTNFS----GVLPDSIGNLKNLSRLDL 338
            +++LD+    L      +  P     + + L +   +      +  ++     L+ L+L
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 339 ALCYFDGSIPTSLANL-----TQLVYLDLSFNKF----VGPIPS-LHMSKNLTHLDLSYN 388
                       +         ++  L L          G + S L     L  L LS N
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123

Query: 389 AL--PGA--ISSTDWEHLSNLVYVDLRYNSLN----GSIPGSLFSLPMLQQLQLAENKFG 440
            L   G   +     +    L  + L Y SL+      +   L + P  ++L ++ N   
Sbjct: 124 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183

Query: 441 G----LIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDL----RNLKILILSSNKL--NG 490
                ++ +    S   L+ + L    +       +  +     +L+ L L SNKL   G
Sbjct: 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243

Query: 491 TVQLAAIQRLHN--LAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSK 548
             +L       +  L  L +    +T     D           L          L+ +  
Sbjct: 244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGD-----------LCRV-------LRAKES 285

Query: 549 LFNLDLSDNQISGEIPNWVWEI---GNVSLQYLNLSHNLLSSLQRPFSISDLSP------ 599
           L  L L+ N++  E    + E        L+ L +     ++       S  S       
Sbjct: 286 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA----CCSHFSSVLAQNR 341

Query: 600 -ITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITG 658
            +  L + +N+L+                 ++    +   +G   S      L++  ++ 
Sbjct: 342 FLLELQISNNRLE-----------------DAGVRELCQGLGQPGSVLRVLWLADCDVSD 384

Query: 659 V----IPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFP 714
                +  TL     L  LDLS N L               G+       L  ++     
Sbjct: 385 SSCSSLAATLLANHSLRELDLSNNCLGDA------------GI-----LQLVESVRQP-- 425

Query: 715 GNCGLHTLDLNGNQLGGTVPKSLA----NCRNLVVL 746
             C L  L L        +   L     +  +L V+
Sbjct: 426 -GCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 460

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 59.2 bits (144), Expect = 4e-09
 Identities = 65/418 (15%), Positives = 117/418 (27%), Gaps = 78/418 (18%)

Query: 572 NVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSF 631
           ++ +Q L++    LS  +    +  L    V+ L    L                   + 
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL-----------------TEAR 44

Query: 632 TSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRA-----KYLLVLDLSKNKLSGKMPT 686
              I   +    +     +L +N +  V    + +        +  L L    L+G    
Sbjct: 45  CKDISSALRVNPALA-ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103

Query: 687 CL---IKMSEILGVLNLRGNSLSGT-----LSVTFPGNCGLHTLDLNGNQLGGTVPKSLA 738
            L   ++    L  L+L  N L                C L  L L    L     + LA
Sbjct: 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163

Query: 739 ----NCRNLVVLDLGNNKIRDTFPWWL-----ENISSLRVLVLRSNSFYGNISCRENGD- 788
                  +   L + NN I +     L     ++   L  L L S     + +CR+    
Sbjct: 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV-TSDNCRDLCGI 222

Query: 789 --SWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQD 846
             S   L+ + L SN  G             +        S  + +      I       
Sbjct: 223 VASKASLRELALGSNKLGD-------VGMAELCPGLLHPSSRLRTLWIWECGI------- 268

Query: 847 AVTVTSKGLEM--ELVKILSIFTSIDFSRNNFDGPIPEEIGRL-----KSLHGLNLSQNA 899
               T+KG      +++       +  + N         +          L  L +   +
Sbjct: 269 ----TAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324

Query: 900 LTG----PIPSAIGNLQQLESLDLSMNHLSGQIPIQLA-----NLTFLSFLNLSHNNL 948
            T        S +   + L  L +S N L      +L        + L  L L+  ++
Sbjct: 325 FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 46.5 bits (111), Expect = 4e-05
 Identities = 30/150 (20%), Positives = 51/150 (34%), Gaps = 29/150 (19%)

Query: 104 LQSLNLAFNMFN---ATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGM---------- 150
           L+SL +    F     +   S L     L  L +SN        ++ +G+          
Sbjct: 315 LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN------NRLEDAGVRELCQGLGQP 368

Query: 151 -TRLVTLDLSS--LNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEW-CQAL 206
            + L  L L+   ++           +L+  L     LREL L    +   GI    +++
Sbjct: 369 GSVLRVLWLADCDVSDSSCS------SLAATLLANHSLRELDLSNNCLGDAGILQLVESV 422

Query: 207 SSLVPKLQVLSLSSCYLSGPIHPSLAKLQS 236
                 L+ L L   Y S  +   L  L+ 
Sbjct: 423 RQPGCLLEQLVLYDIYWSEEMEDRLQALEK 452

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 85.0 bits (211), Expect = 3e-18
 Identities = 53/215 (24%), Positives = 95/215 (44%), Gaps = 17/215 (7%)

Query: 403 SNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGN 462
            +   +DL +N L      S FS P LQ L L+  +    I + +  S S L T+ L+GN
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGN 86

Query: 463 RLEGPIPMSIFD-LRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDS 521
            ++  + +  F  L +L+ L+     L  +++   I  L  L +L +++N +  +     
Sbjct: 87  PIQS-LALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ-SFKLPE 143

Query: 522 SFPS--QVRTLRLASCKLRVIP-----NLKN-QSKLFNLDLSDNQISGEIPNWVWEIGNV 573
            F +   +  L L+S K++ I       L        +LDLS N ++  I    ++   +
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFK--EI 200

Query: 574 SLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSN 608
            L+ L L  N L S+        L+ +  + LH+N
Sbjct: 201 RLKELALDTNQLKSVP-DGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 75.4 bits (186), Expect = 7e-15
 Identities = 55/235 (23%), Positives = 89/235 (37%), Gaps = 40/235 (17%)

Query: 454 LDTIDLSGNRLEGPIPMSIFD-LRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNN 512
              +DLS N L   +    F     L++L LS  ++  T++  A Q L +L+ L L+ N 
Sbjct: 30  TKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 87

Query: 513 LTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGN 572
           +        S                        S L  L   +  ++  + N+      
Sbjct: 88  IQ-------SLALGA---------------FSGLSSLQKLVAVETNLA-SLENFPIG-HL 123

Query: 573 VSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYP--------PPKAVLV 624
            +L+ LN++HNL+ S + P   S+L+ +  LDL SN++Q +I           P   + +
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSL 182

Query: 625 DYSNNSFTSSIPDDIGNFVSFTL-FFSLSNNSITGVIPETLCRAKYLLVLDLSKN 678
           D S N     I    G F    L   +L  N +  V      R   L  + L  N
Sbjct: 183 DLSLNPMN-FIQP--GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 63.8 bits (156), Expect = 5e-11
 Identities = 48/258 (18%), Positives = 87/258 (33%), Gaps = 50/258 (19%)

Query: 521 SSFPSQVRTLRLASCKLRVIPN--LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYL 578
            + P   + L L+   LR + +    +  +L  LDLS  +I   I +  ++     L  L
Sbjct: 24  DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQ-SLSHLSTL 81

Query: 579 NLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDD 638
            L+ N + SL    + S LS +  L      L                       S+ + 
Sbjct: 82  ILTGNPIQSLA-LGAFSGLSSLQKLVAVETNLA----------------------SLENF 118

Query: 639 IGNFVSFTLFFSLSNNSITGVI-PETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGV 697
               +      ++++N I     PE       L  LDLS NK+                 
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ---------------- 162

Query: 698 LNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTF 757
            ++    L     +         +LDL+ N +   +         L  L L  N+++   
Sbjct: 163 -SIYCTDLRVLHQMPLLNL----SLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVP 216

Query: 758 PWWLENISSLRVLVLRSN 775
               + ++SL+ + L +N
Sbjct: 217 DGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 62.7 bits (153), Expect = 9e-11
 Identities = 67/221 (30%), Positives = 92/221 (41%), Gaps = 34/221 (15%)

Query: 236 SLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRL----NGTFPEKILQVHTLETLDLS 291
           S   + L  N L          F  L  L LS   +    +G +      +  L TL L+
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY----QSLSHLSTLILT 84

Query: 292 GNSLLQGSLPD--FPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLA---LCYFDGS 346
           GN +   SL    F   SSL+ L+   TN + +    IG+LK L  L++A   +  F   
Sbjct: 85  GNPI--QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK-- 140

Query: 347 IPTSLANLTQLVYLDLSFNKF----VGPIPSLH-MSKNLTHLDLSYNAL----PGAISST 397
           +P   +NLT L +LDLS NK        +  LH M      LDLS N +    PGA    
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200

Query: 398 DWEHLSNLVYVDLRYNSLNGSIPGSLF-SLPMLQQLQLAEN 437
                  L  + L  N L  S+P  +F  L  LQ++ L  N
Sbjct: 201 ------RLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 61.9 bits (151), Expect = 2e-10
 Identities = 54/232 (23%), Positives = 84/232 (36%), Gaps = 30/232 (12%)

Query: 117 TEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLS 176
            +IP  L    +  NL+LS                 L  LDLS          +E     
Sbjct: 20  YKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR-CEIQT---IE----D 69

Query: 177 GLLQNLAELRELYLDGANISA--PGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKL 234
           G  Q+L+ L  L L G  I +   G       S L   LQ L      L+   +  +  L
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGA-----FSGL-SSLQKLVAVETNLASLENFPIGHL 123

Query: 235 QSLSVIRLDQNDLLS-PVPEFLADFFNLTSLRLSHSRL----NGTFPE-KILQVHTLETL 288
           ++L  + +  N + S  +PE+ ++  NL  L LS +++             + +  L  L
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS-L 182

Query: 289 DLSGNSLLQGSLPD--FPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDL 338
           DLS N +    +    F K   L+ L L       V       L +L ++ L
Sbjct: 183 DLSLNPM--NFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL 231

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.8 bits (117), Expect = 4e-06
 Identities = 40/189 (21%), Positives = 61/189 (32%), Gaps = 25/189 (13%)

Query: 100 SLKYLQSLNLAFNMFNATEIPSGL-GSLTNLTNLNLSNAGFAGQIPIQV-SGMTRLVTLD 157
           S   LQ L+L+        I  G   SL++L+ L L+       + +   SG++ L  L 
Sbjct: 50  SFPELQVLDLSRC--EIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLV 106

Query: 158 LSSLNR--------FGAPLKLENPNLS----------GLLQNLAELRELYLDGANISAPG 199
                          G    L+  N++              NL  L  L L    I +  
Sbjct: 107 AVE-TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165

Query: 200 IEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFF 259
               + L  +      L LS   ++  I P   K   L  + LD N L S          
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLT 224

Query: 260 NLTSLRLSH 268
           +L  + L  
Sbjct: 225 SLQKIWLHT 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.4 bits (116), Expect = 5e-06
 Identities = 47/274 (17%), Positives = 80/274 (29%), Gaps = 57/274 (20%)

Query: 652 SNNSITGV---IPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGT 708
              +   +   +P +         LDLS N L            E L VL+L    +   
Sbjct: 15  MELNFYKIPDNLPFSTKN------LDLSFNPLRHLGSYSFFSFPE-LQVLDLSRCEIQTI 67

Query: 709 LSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLR 768
               +     L TL L GN +      + +   +L  L      +     + + ++ +L+
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 769 VLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSN 828
            L +  N    +    E   +   L+ +DL+SN          I S              
Sbjct: 128 ELNVAHNLI-QSFKLPEYFSNLTNLEHLDLSSNK---------IQS-------------- 163

Query: 829 FKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLK 888
                   +   D                 L ++  +  S+D S N  +  I     +  
Sbjct: 164 --------IYCTDLRV--------------LHQMPLLNLSLDLSLNPMNF-IQPGAFKEI 200

Query: 889 SLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMN 922
            L  L L  N L          L  L+ + L  N
Sbjct: 201 RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.5 bits (98), Expect = 8e-04
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 886 RLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHL-SGQIPIQLANLTFLSFLNLS 944
            L SL  L   +  L       IG+L+ L+ L+++ N + S ++P   +NLT L  L+LS
Sbjct: 98  GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 945 HNNL 948
            N +
Sbjct: 158 SNKI 161

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 83.2 bits (206), Expect = 2e-17
 Identities = 48/260 (18%), Positives = 97/260 (37%), Gaps = 22/260 (8%)

Query: 400 EHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDL 459
             L+N + +    +++  ++      L  +  L          I      ++  L  ++L
Sbjct: 16  PALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT-IEGVQYLNN--LIGLEL 70

Query: 460 SGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGS 519
             N++    P+   +L  +  L LS N L     ++AI  L ++  L+L+   +T    +
Sbjct: 71  KDNQITDLAPLK--NLTKITELELSGNPLK---NVSAIAGLQSIKTLDLTSTQITDV--T 123

Query: 520 DSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGN-VSLQYL 578
             +  S ++ L L   ++  I  L   + L  L + + Q+S   P     + N   L  L
Sbjct: 124 PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-----LANLSKLTTL 178

Query: 579 NLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIP-YPPPKAVLVDYSNNSFTSSIPD 637
               N +S +     ++ L  +  + L +NQ+    P        +V  +N + T+    
Sbjct: 179 KADDNKISDIS---PLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVF 235

Query: 638 DIGNFVSFTLFFSLSNNSIT 657
              N V   +    S   I 
Sbjct: 236 YNNNLVVPNVVKGPSGAPIA 255

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 81.3 bits (201), Expect = 9e-17
 Identities = 55/312 (17%), Positives = 109/312 (34%), Gaps = 71/312 (22%)

Query: 285 LETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFD 344
              +    +++             + TL    T  + +  + +  L NL  L+L      
Sbjct: 21  AIKIAAGKSNV--TDTVTQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQI- 75

Query: 345 GSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSN 404
            +    L NLT++  L+LS N  +  + ++   +++  LDL+   +      TD   L+ 
Sbjct: 76  -TDLAPLKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLTSTQI------TDVTPLAG 127

Query: 405 LVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRL 464
                                L  LQ L L  N+    I   +  ++  L  + +   ++
Sbjct: 128 ---------------------LSNLQVLYLDLNQITN-ISPLAGLTN--LQYLSIGNAQV 163

Query: 465 EGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFP 524
               P++  +L  L  L    NK++    ++ +  L NL ++ L  N ++          
Sbjct: 164 SDLTPLA--NLSKLTTLKADDNKIS---DISPLASLPNLIEVHLKNNQIS---------- 208

Query: 525 SQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNL 584
                          +  L N S LF + L++  I+ +         N +L   N+    
Sbjct: 209 --------------DVSPLANTSNLFIVTLTNQTITNQPV-----FYNNNLVVPNVVKGP 249

Query: 585 LSSLQRPFSISD 596
             +   P +ISD
Sbjct: 250 SGAPIAPATISD 261

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 73.2 bits (180), Expect = 5e-14
 Identities = 57/314 (18%), Positives = 106/314 (33%), Gaps = 91/314 (28%)

Query: 454 LDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNL 513
              I    + +   +  +  DL  +  L      +     +  +Q L+NL  LEL  N +
Sbjct: 21  AIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKDNQI 75

Query: 514 TVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNV 573
           T                         +  LKN +K+  L+LS N +   +       G  
Sbjct: 76  TD------------------------LAPLKNLTKITELELSGNPLK-NVSA---IAGLQ 107

Query: 574 SLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTS 633
           S++ L+L+   ++ +     ++ LS + VL L  NQ+                      +
Sbjct: 108 SIKTLDLTSTQITDVT---PLAGLSNLQVLYLDLNQI----------------------T 142

Query: 634 SIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSE 693
           +I   +    +   + S+ N  ++ + P  L     L  L    NK+S         +S 
Sbjct: 143 NISP-LAGLTNLQ-YLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS--------DISP 190

Query: 694 ILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKI 753
           +  + NL                     + L  NQ+  +    LAN  NL ++ L N  I
Sbjct: 191 LASLPNLI-------------------EVHLKNNQI--SDVSPLANTSNLFIVTLTNQTI 229

Query: 754 RDTFPWWLENISSL 767
            +   ++  N+   
Sbjct: 230 TNQPVFYNNNLVVP 243

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 70.5 bits (173), Expect = 4e-13
 Identities = 59/302 (19%), Positives = 108/302 (35%), Gaps = 36/302 (11%)

Query: 89  SAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVS 148
              I+   P  +L     +    +  N T+       L  +T L+    G      +Q  
Sbjct: 6   PTAINVIFPDPALANAIKIAAGKS--NVTDT-VTQADLDGITTLSAFGTGVTTIEGVQ-- 60

Query: 149 GMTRLVTLDLSSLNRFGAPLKLENPNLSGL--LQNLAELRELYLDGANISAPGIEWCQAL 206
            +  L+ L+L             +  ++ L  L+NL ++ EL L G  +         A+
Sbjct: 61  YLNNLIGLELK------------DNQITDLAPLKNLTKITELELSGNPLKNV-----SAI 103

Query: 207 SSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRL 266
           + L   ++ L L+S  ++      LA L +L V+ LD N + +  P  LA   NL  L +
Sbjct: 104 AGL-QSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSI 158

Query: 267 SHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDS 326
            +++++      +  +  L TL    N +    +       +L  + L N   S V P  
Sbjct: 159 GNAQVSDL--TPLANLSKLTTLKADDNKIS--DISPLASLPNLIEVHLKNNQISDVSP-- 212

Query: 327 IGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLS 386
           + N  NL  + L              NL     +       + P      +      +L+
Sbjct: 213 LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISD-NGTYASPNLT 271

Query: 387 YN 388
           +N
Sbjct: 272 WN 273

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.8 bits (166), Expect = 3e-12
 Identities = 49/271 (18%), Positives = 94/271 (34%), Gaps = 50/271 (18%)

Query: 534 SCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFS 593
              + VI      +    +    + ++  +     +     +  L+     +++++    
Sbjct: 6   PTAINVIFPDPALANAIKIAAGKSNVTDTVT----QADLDGITTLSAFGTGVTTIE---G 58

Query: 594 ISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFT--LFFSL 651
           +  L+ +  L+L  NQ+                           D+    + T      L
Sbjct: 59  VQYLNNLIGLELKDNQIT--------------------------DLAPLKNLTKITELEL 92

Query: 652 SNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSV 711
           S N +  V    +   + +  LDL+  +++   P  L  +S  L VL L  N ++     
Sbjct: 93  SGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP--LAGLSN-LQVLYLDLNQITNISP- 146

Query: 712 TFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLV 771
              G   L  L +   Q+  +    LAN   L  L   +NKI D  P  L ++ +L  + 
Sbjct: 147 -LAGLTNLQYLSIGNAQV--SDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVH 201

Query: 772 LRSNSFYGNISCRENGDSWPKLQIVDLASNN 802
           L++N     IS      +   L IV L +  
Sbjct: 202 LKNN----QISDVSPLANTSNLFIVTLTNQT 228

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 48/258 (18%), Positives = 98/258 (37%), Gaps = 55/258 (21%)

Query: 81  LDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFA 140
           L+L +  I+    + +PL +L  +  L L+ N      + S +  L ++  L+L++    
Sbjct: 68  LELKDNQIT----DLAPLKNLTKITELELSGN--PLKNV-SAIAGLQSIKTLDLTSTQIT 120

Query: 141 GQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGI 200
              P+  +G++ L  L L   N+          N+S  L  L  L+ L +  A +S    
Sbjct: 121 DVTPL--AGLSNLQVLYLDL-NQIT--------NISP-LAGLTNLQYLSIGNAQVSD--- 165

Query: 201 EWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFN 260
                L++L  KL  L      +S      LA L +L  + L  N +       ++   N
Sbjct: 166 --LTPLANL-SKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISD-----VSPLAN 215

Query: 261 LTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFS 320
            ++                     L  + L+  ++   + P F  N+ +   ++   + +
Sbjct: 216 TSN---------------------LFIVTLTNQTIT--NQPVFYNNNLVVPNVVKGPSGA 252

Query: 321 GVLPDSIGNLKNLSRLDL 338
            + P +I +    +  +L
Sbjct: 253 PIAPATISDNGTYASPNL 270

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 46/306 (15%), Positives = 100/306 (32%), Gaps = 50/306 (16%)

Query: 651 LSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLS 710
               +I  + P         + +   K+ ++         +   +  L+  G  ++   +
Sbjct: 4   TQPTAINVIFP--DPALANAIKIAAGKSNVTD--TVTQADLDG-ITTLSAFGTGVT---T 55

Query: 711 VTFPGNC-GLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRV 769
           +        L  L+L  NQ+  T    L N   +  L+L  N +++     +  + S++ 
Sbjct: 56  IEGVQYLNNLIGLELKDNQI--TDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKT 111

Query: 770 LVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNF 829
           L L S      I+          LQ++ L  N          IT+   +        +N 
Sbjct: 112 LDLTST----QITDVTPLAGLSNLQVLYLDLNQ---------ITNISPL-----AGLTNL 153

Query: 830 KDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKS 889
           + +     +++D               +  +  LS  T++    N         +  L +
Sbjct: 154 QYLSIGNAQVSD---------------LTPLANLSKLTTLKADDNKISDI--SPLASLPN 196

Query: 890 LHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLV 949
           L  ++L  N ++    S + N   L  + L+   ++ Q      NL   + +       +
Sbjct: 197 LIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPI 254

Query: 950 GKIPIS 955
               IS
Sbjct: 255 APATIS 260

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 79.7 bits (197), Expect = 2e-16
 Identities = 44/265 (16%), Positives = 84/265 (31%), Gaps = 44/265 (16%)

Query: 349 TSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYV 408
                L   V  +L     V  + S      + + +   + +    S    +  +NL  +
Sbjct: 13  FPDPGLANAVKQNLGKQS-VTDLVSQKELSGVQNFNGDNSNI---QSLAGMQFFTNLKEL 68

Query: 409 DLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPI 468
            L +N ++  +   L  L  L++L +  N+    +   +   S+ L  + L  N L    
Sbjct: 69  HLSHNQIS-DLSP-LKDLTKLEELSVNRNR----LKNLNGIPSACLSRLFLDNNELRDTD 122

Query: 469 PMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVR 528
            +    L+NL+IL + +NKL     +  +  L  L  L+L  N +T              
Sbjct: 123 SLI--HLKNLEILSIRNNKLK---SIVMLGFLSKLEVLDLHGNEIT-------------- 163

Query: 529 TLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSL 588
                         L    K+  +DL+  +   E   +        L   N   +     
Sbjct: 164 ----------NTGGLTRLKKVNWIDLTGQKCVNEPVKY-----QPELYITNTVKDPDGRW 208

Query: 589 QRPFSISDLSPITVLDLHSNQLQGN 613
             P+ IS+        +        
Sbjct: 209 ISPYYISNGGSYVDGCVLWELPVYT 233

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 69.3 bits (170), Expect = 5e-13
 Identities = 43/233 (18%), Positives = 80/233 (34%), Gaps = 39/233 (16%)

Query: 474 DLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLA 533
            L N     L    +     L + + L  +       +N+   AG      + ++ L L+
Sbjct: 17  GLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQSLAGMQF--FTNLKELHLS 71

Query: 534 SCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFS 593
             ++  +  LK+ +KL  L ++ N++   +      I +  L  L L +N L       S
Sbjct: 72  HNQISDLSPLKDLTKLEELSVNRNRLK-NLNG----IPSACLSRLFLDNNELRDTD---S 123

Query: 594 ISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSN 653
           +  L  + +L + +N+L                       SI   +G          L  
Sbjct: 124 LIHLKNLEILSIRNNKL----------------------KSI-VMLGFLSKLE-VLDLHG 159

Query: 654 NSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLS 706
           N IT      L R K +  +DL+  K   +      ++     V +  G  +S
Sbjct: 160 NEITNTGG--LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWIS 210

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 47/240 (19%), Positives = 83/240 (34%), Gaps = 21/240 (8%)

Query: 285 LETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFD 344
               +L   S+    L    + S ++     N+N   +    +    NL  L L+     
Sbjct: 21  AVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNIQSL--AGMQFFTNLKELHLSHNQI- 75

Query: 345 GSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSN 404
            S  + L +LT+L  L ++ N+ +  +  +  S  L+ L L  N L     +    HL N
Sbjct: 76  -SDLSPLKDLTKLEELSVNRNR-LKNLNGIP-SACLSRLFLDNNELR---DTDSLIHLKN 129

Query: 405 LVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASS-SALDTIDLSGNR 463
           L  + +R N L  SI   L  L  L+ L L  N+    I      +    ++ IDL+G +
Sbjct: 130 LEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNE----ITNTGGLTRLKKVNWIDLTGQK 183

Query: 464 LEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSF 523
               +   +     L I     +     +    I    +     + +            F
Sbjct: 184 C---VNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYTDEVSYKF 240

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 60.8 bits (148), Expect = 4e-10
 Identities = 36/233 (15%), Positives = 74/233 (31%), Gaps = 45/233 (19%)

Query: 540 IPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSP 599
           +      +     +L    ++  +     +     +Q  N  ++ + SL     +   + 
Sbjct: 12  VFPDPGLANAVKQNLGKQSVTDLVS----QKELSGVQNFNGDNSNIQSLA---GMQFFTN 64

Query: 600 ITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTL--FFSLSNNSIT 657
           +  L L  NQ+                           D+      T     S++ N + 
Sbjct: 65  LKELHLSHNQIS--------------------------DLSPLKDLTKLEELSVNRNRLK 98

Query: 658 GVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNC 717
            +          L  L L  N+L       LI +   L +L++R N L  ++ +      
Sbjct: 99  NLNGIPSAC---LSRLFLDNNELRD--TDSLIHLKN-LEILSIRNNKLK-SIVM-LGFLS 150

Query: 718 GLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVL 770
            L  LDL+GN++  T    L   + +  +DL   K  +    +   +     +
Sbjct: 151 KLEVLDLHGNEI--TNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTV 201

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 52/255 (20%), Positives = 92/255 (36%), Gaps = 32/255 (12%)

Query: 86  ESISAG--IDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQI 143
           ESI     I+   P   L      NL     + T++      L+ + N N  N+      
Sbjct: 1   ESIQRPTPINQVFPDPGLANAVKQNLGKQ--SVTDL-VSQKELSGVQNFNGDNSNIQSLA 57

Query: 144 PIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWC 203
            +Q    T L  L LS  N+      L        L++L +L EL ++   +    +   
Sbjct: 58  GMQ--FFTNLKELHLSH-NQIS---DLSP------LKDLTKLEELSVNRNRLKN--LN-- 101

Query: 204 QALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTS 263
             + S    L  L L +  L      SL  L++L ++ +  N L S V   L     L  
Sbjct: 102 -GIPSA--CLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEV 154

Query: 264 LRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVL 323
           L L  + +  T    + ++  +  +DL+G   +   +   P+     T+   +  +  + 
Sbjct: 155 LDLHGNEI--TNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW--IS 210

Query: 324 PDSIGNLKNLSRLDL 338
           P  I N  +     +
Sbjct: 211 PYYISNGGSYVDGCV 225

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 57.7 bits (140), Expect = 4e-09
 Identities = 50/218 (22%), Positives = 85/218 (38%), Gaps = 38/218 (17%)

Query: 587 SLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFT 646
           S+QRP  I+ + P   L                 AV  +    S T     D+ +    +
Sbjct: 2   SIQRPTPINQVFPDPGL---------------ANAVKQNLGKQSVT-----DLVSQKELS 41

Query: 647 --LFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNS 704
               F+  N++I  +    +     L  L LS N++S    + L  +++ L  L++  N 
Sbjct: 42  GVQNFNGDNSNIQSL--AGMQFFTNLKELHLSHNQIS--DLSPLKDLTK-LEELSVNRNR 96

Query: 705 LSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENI 764
           L    ++    +  L  L L+ N+L      SL + +NL +L + NNK++      L  +
Sbjct: 97  LK---NLNGIPSACLSRLFLDNNEL--RDTDSLIHLKNLEILSIRNNKLKSIVM--LGFL 149

Query: 765 SSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNN 802
           S L VL L  N     I+         K+  +DL    
Sbjct: 150 SKLEVLDLHGN----EITNTGGLTRLKKVNWIDLTGQK 183

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 30/237 (12%), Positives = 67/237 (28%), Gaps = 42/237 (17%)

Query: 719 LHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFY 778
               +L    +  T   S      +   +  N+ I+      ++  ++L+ L L  N   
Sbjct: 21  AVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHN--- 73

Query: 779 GNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLK 838
             IS         KL+ + +  N          + +            +    +  +  +
Sbjct: 74  -QISDLSPLKDLTKLEELSVNRNR---------LKNL------NGIPSACLSRLFLDNNE 117

Query: 839 IADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQN 898
           + D                + +  L     +    N         +G L  L  L+L  N
Sbjct: 118 LRD---------------TDSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGN 160

Query: 899 ALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLVGKIPIS 955
            +T      +  L+++  +DL+      +       L   + +       +    IS
Sbjct: 161 EITNT--GGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYIS 215

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 33/213 (15%), Positives = 73/213 (34%), Gaps = 42/213 (19%)

Query: 737 LANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIV 796
                N V  +LG   + D      + +S ++     ++    NI        +  L+ +
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNS----NIQSLAGMQFFTNLKEL 68

Query: 797 DLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLE 856
            L+ N          I+    +     +  +  +++     ++ +            G+ 
Sbjct: 69  HLSHNQ---------ISDLSPL-----KDLTKLEELSVNRNRLKNL----------NGIP 104

Query: 857 MELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLES 916
              +  L +        N       + +  LK+L  L++  N L       +G L +LE 
Sbjct: 105 SACLSRLFL------DNNEL--RDTDSLIHLKNLEILSIRNNKLKS--IVMLGFLSKLEV 154

Query: 917 LDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLV 949
           LDL  N ++      L  L  +++++L+    V
Sbjct: 155 LDLHGNEITNTGG--LTRLKKVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 40/246 (16%), Positives = 88/246 (35%), Gaps = 39/246 (15%)

Query: 81  LDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFA 140
            +    +I     + + +     L+ L+L+ N    +++ S L  LT L  L+++     
Sbjct: 46  FNGDNSNIQ----SLAGMQFFTNLKELHLSHN--QISDL-SPLKDLTKLEELSVNRN--- 95

Query: 141 GQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGL--LQNLAELRELYLDGANISAP 198
                ++  +  + +  LS L        L+N  L     L +L  L  L +    + + 
Sbjct: 96  -----RLKNLNGIPSACLSRLF-------LDNNELRDTDSLIHLKNLEILSIRNNKLKS- 142

Query: 199 GIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADF 258
            I     L  L  KL+VL L    ++      L +L+ ++ I L     ++   ++  + 
Sbjct: 143 -IV---MLGFL-SKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPVKYQPEL 195

Query: 259 FNLTSLRLSHSRLNGTF--PEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSN 316
           +   +++      +G +  P  I    +     +     +      + K S    +  + 
Sbjct: 196 YITNTVKD----PDGRWISPYYISNGGSYVDGCVLWELPVYTDEVSY-KFSEYINVGETE 250

Query: 317 TNFSGV 322
             F G 
Sbjct: 251 AIFDGT 256

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 78.1 bits (193), Expect = 2e-16
 Identities = 30/162 (18%), Positives = 64/162 (39%), Gaps = 7/162 (4%)

Query: 256 ADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLS 315
           A   +LT + L++  +       I   H ++ L ++       +       S+L  L + 
Sbjct: 41  AQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHA--TNYNPISGLSNLERLRIM 96

Query: 316 NTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLH 375
             + +     ++  L +L+ LD++    D SI T +  L ++  +DLS+N  +  I  L 
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLK 156

Query: 376 MSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNG 417
               L  L++ ++ +         E    L  +     ++ G
Sbjct: 157 TLPELKSLNIQFDGV---HDYRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 73.8 bits (182), Expect = 5e-15
 Identities = 32/212 (15%), Positives = 73/212 (34%), Gaps = 36/212 (16%)

Query: 352 ANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISS-TDWEHLSNLVYVDL 410
           +     +   L  +     I    M  +LT++ L+       ++  T  E+  N+  + +
Sbjct: 20  STFKAYLNGLLGQSS-TANITEAQM-NSLTYITLANIN----VTDLTGIEYAHNIKDLTI 73

Query: 411 RYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPM 470
                    P  +  L  L++L                          + G  +      
Sbjct: 74  NNIHATNYNP--ISGLSNLERL-------------------------RIMGKDVTSDKIP 106

Query: 471 SIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTL 530
           ++  L +L +L +S +  + +  L  I  L  +  ++LSYN    +     + P ++++L
Sbjct: 107 NLSGLTSLTLLDISHSAHDDS-ILTKINTLPKVNSIDLSYNGAITDIMPLKTLP-ELKSL 164

Query: 531 RLASCKLRVIPNLKNQSKLFNLDLSDNQISGE 562
            +    +     +++  KL  L      I G+
Sbjct: 165 NIQFDGVHDYRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 29/198 (14%), Positives = 75/198 (37%), Gaps = 22/198 (11%)

Query: 125 SLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAE 184
           +     N  L  +  A    I  + M  L  + L+++N     +     +L+G+ +    
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANIN-----VT----DLTGI-EYAHN 67

Query: 185 LRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQ 244
           +++L ++  + +         +S L   L+ L +    ++    P+L+ L SL+++ +  
Sbjct: 68  IKDLTINNIHAT--NYN---PISGL-SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121

Query: 245 NDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFP 304
           +     +   +     + S+ LS++    T    +  +  L++L++  + +         
Sbjct: 122 SAHDDSILTKINTLPKVNSIDLSYNGAI-TDIMPLKTLPELKSLNIQFDGV--HDYRGIE 178

Query: 305 KNSSLRTLMLSNTNFSGV 322
               L  L   +    G 
Sbjct: 179 DFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 3/97 (3%)

Query: 867 TSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSG 926
             +     +        +  L SL  L++S +A    I + I  L ++ S+DLS N    
Sbjct: 91  ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150

Query: 927 QIPIQLANLTFLSFLNLSHNNLVGKIPIS--TQLQSF 961
            I   L  L  L  LN+  + +     I    +L   
Sbjct: 151 DIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQL 186

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.5 bits (137), Expect = 4e-09
 Identities = 16/71 (22%), Positives = 30/71 (42%)

Query: 882 EEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFL 941
             I  L +L  L +    +T      +  L  L  LD+S +     I  ++  L  ++ +
Sbjct: 82  NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI 141

Query: 942 NLSHNNLVGKI 952
           +LS+N  +  I
Sbjct: 142 DLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.1 bits (136), Expect = 6e-09
 Identities = 25/217 (11%), Positives = 60/217 (27%), Gaps = 43/217 (19%)

Query: 541 PNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPI 600
              K      N  L  +  +      +      SL Y+ L++  ++ L     I     I
Sbjct: 20  STFK---AYLNGLLGQSSTANITEAQM-----NSLTYITLANINVTDLT---GIEYAHNI 68

Query: 601 TVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTL--FFSLSNNSITG 658
             L +++                              +       +      +    +T 
Sbjct: 69  KDLTINNIHAT--------------------------NYNPISGLSNLERLRIMGKDVTS 102

Query: 659 VIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCG 718
                L     L +LD+S +     + T +  + + +  ++L  N     +         
Sbjct: 103 DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK-VNSIDLSYNGAITDIM-PLKTLPE 160

Query: 719 LHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRD 755
           L +L++  + +     + + +   L  L   +  I  
Sbjct: 161 LKSLNIQFDGV--HDYRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 25/165 (15%), Positives = 60/165 (36%), Gaps = 22/165 (13%)

Query: 81  LDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFA 140
           + L+    +  + + + +     ++ L +     +AT   + +  L+NL  L +      
Sbjct: 49  ITLA----NINVTDLTGIEYAHNIKDLTINNI--HATNY-NPISGLSNLERLRIMGKDVT 101

Query: 141 GQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGI 200
                 +SG+T L  LD+S  +        ++  L+  +  L ++  + L         I
Sbjct: 102 SDKIPNLSGLTSLTLLDISH-S------AHDDSILTK-INTLPKVNSIDLSYNG----AI 149

Query: 201 EWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQN 245
                L +L P+L+ L++    +       +     L+ +     
Sbjct: 150 TDIMPLKTL-PELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 20/126 (15%), Positives = 47/126 (37%), Gaps = 6/126 (4%)

Query: 650 SLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTL 709
           +++N   T   P  +     L  L +    ++      L  ++  L +L++  ++   ++
Sbjct: 72  TINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTS-LTLLDISHSAHDDSI 128

Query: 710 SVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRV 769
                    ++++DL+ N    T    L     L  L++  + + D     +E+   L  
Sbjct: 129 LTKINTLPKVNSIDLSYNGAI-TDIMPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQ 185

Query: 770 LVLRSN 775
           L   S 
Sbjct: 186 LYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.4 bits (129), Expect = 4e-08
 Identities = 20/158 (12%), Positives = 56/158 (35%), Gaps = 21/158 (13%)

Query: 650 SLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEI-----LGVLNLRGNS 704
            L  +S   +    +     L  + L+   ++         ++ I     +  L +    
Sbjct: 29  LLGQSSTANITEAQM---NSLTYITLANINVT--------DLTGIEYAHNIKDLTINNIH 77

Query: 705 LSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENI 764
            +    ++  G   L  L + G  +      +L+   +L +LD+ ++   D+    +  +
Sbjct: 78  ATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135

Query: 765 SSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNN 802
             +  + L  N    +I   +     P+L+ +++  + 
Sbjct: 136 PKVNSIDLSYNGAITDIMPLKT---LPELKSLNIQFDG 170

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.0 bits (128), Expect = 5e-08
 Identities = 29/147 (19%), Positives = 60/147 (40%), Gaps = 24/147 (16%)

Query: 81  LDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFA 140
           L ++    +    N +P+  L  L+ L +       ++    L  LT+LT L++S++   
Sbjct: 71  LTINNIHAT----NYNPISGLSNLERLRIMGKDVT-SDKIPNLSGLTSLTLLDISHSAHD 125

Query: 141 GQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGL--LQNLAELRELYLDGANISAP 198
             I  +++ + ++ ++DLS            N  ++ +  L+ L EL+ L +    +   
Sbjct: 126 DSILTKINTLPKVNSIDLSY-----------NGAITDIMPLKTLPELKSLNIQFDGVH-- 172

Query: 199 GIEWCQALSSLVPKLQVLSLSSCYLSG 225
                  +    PKL  L   S  + G
Sbjct: 173 DYR---GIEDF-PKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 25/210 (11%), Positives = 56/210 (26%), Gaps = 57/210 (27%)

Query: 474 DLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLA 533
            + +L  + L++  +     L  I+  HN+  L ++  + T                   
Sbjct: 42  QMNSLTYITLANINVT---DLTGIEYAHNIKDLTINNIHATN------------------ 80

Query: 534 SCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGN-VSLQYLNLSHNLLSSLQRPF 592
                    +   S L  L +    ++ +       +    SL  L++SH+         
Sbjct: 81  ------YNPISGLSNLERLRIMGKDVTSDKIP---NLSGLTSLTLLDISHSAHDDSI-LT 130

Query: 593 SISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLS 652
            I+ L  +  +DL  N    +I                        +          ++ 
Sbjct: 131 KINTLPKVNSIDLSYNGAITDI----------------------MPLKTLPELK-SLNIQ 167

Query: 653 NNSITGVIPETLCRAKYLLVLDLSKNKLSG 682
            + +       +     L  L      + G
Sbjct: 168 FDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.7 bits (122), Expect = 4e-07
 Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 3/82 (3%)

Query: 867 TSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSG 926
           T +D S +  D  I  +I  L  ++ ++LS N     I   +  L +L+SL++  + +  
Sbjct: 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHD 173

Query: 927 QIPIQLANLTFLSFLNLSHNNL 948
                + +   L+ L      +
Sbjct: 174 YRG--IEDFPKLNQLYAFSQTI 193

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 78.9 bits (195), Expect = 2e-16
 Identities = 45/238 (18%), Positives = 96/238 (40%), Gaps = 36/238 (15%)

Query: 283 HTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCY 342
           H  E   ++   +    +P  P   S +TL L  T+   +   +  NL N+SR+ +++  
Sbjct: 11  HQEEDFRVTCKDIQ--RIPSLP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV 66

Query: 343 FDGSIPT-SLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEH 401
               + + S  NL+++ ++++               +NLT++D      P A      + 
Sbjct: 67  TLQQLESHSFYNLSKVTHIEIRNT------------RNLTYID------PDA-----LKE 103

Query: 402 LSNLVYVDLRYNSLNGSIPG--SLFSLPMLQQLQLAENKFGGLIPE--FSNASSSALDTI 457
           L  L ++ +    L    P    ++S  +   L++ +N +   IP   F    +    T+
Sbjct: 104 LPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE-TLTL 161

Query: 458 DLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHN-LAKLELSYNNLT 514
            L  N     +    F+   L  + L+ NK    +   A   +++  + L++S  ++T
Sbjct: 162 KLYNNGFTS-VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 35/235 (14%), Positives = 76/235 (32%), Gaps = 49/235 (20%)

Query: 475 LRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLAS 534
             + + L L    L  T+   A   L N++++ +S +                       
Sbjct: 30  PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDV---------------------- 66

Query: 535 CKLRVIPN--LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPF 592
             L+ + +    N SK+ ++++ + +    I     +     L++L + +  L       
Sbjct: 67  -TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK-ELPLLKFLGIFNTGLKMFPDLT 124

Query: 593 SISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLS 652
            +       +L++  N    +IP             N+F            + TL   L 
Sbjct: 125 KVYSTDIFFILEITDNPYMTSIP------------VNAFQ--------GLCNETLTLKLY 164

Query: 653 NNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPT-CLIKMSEILGVLNLRGNSLS 706
           NN  T  +         L  + L+KNK    +       +     +L++   S++
Sbjct: 165 NNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 39/276 (14%), Positives = 85/276 (30%), Gaps = 58/276 (21%)

Query: 501 HNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPN--LKNQSKLFNLDLSDNQ 558
           H      ++  ++        S P   +TL+L    LR IP+    N   +  + +S + 
Sbjct: 11  HQEEDFRVTCKDIQ----RIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV 66

Query: 559 ISGEIPNWVWEIGNVSLQYLNLSHN-LLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYP 617
              ++ +  +      + ++ + +   L+ +  P ++ +L  +  L + +  L+      
Sbjct: 67  TLQQLESHSFY-NLSKVTHIEIRNTRNLTYID-PDALKELPLLKFLGIFNTGLK------ 118

Query: 618 PPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSK 677
                             PD        T  +S                     +L+++ 
Sbjct: 119 ----------------MFPD-------LTKVYSTDI----------------FFILEITD 139

Query: 678 NKLSGKMPT-CLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPK- 735
           N     +P      +      L L  N  +      F G   L  + LN N+    + K 
Sbjct: 140 NPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKD 198

Query: 736 SLAN-CRNLVVLDLGNNKIRDTFPWWLENISSLRVL 770
           +         +LD+    +       LE++  L   
Sbjct: 199 AFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIAR 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 53.5 bits (129), Expect = 7e-08
 Identities = 41/235 (17%), Positives = 78/235 (33%), Gaps = 35/235 (14%)

Query: 117 TEIPSGLGSLTNLTNLNLSNAGFAGQIPIQV-SGMTRLVTLDLSSLNRFGAPLKLENPNL 175
             IPS      +   L L        IP    S +  +  + +S         +LE    
Sbjct: 24  QRIPSLP---PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQ---QLE---- 72

Query: 176 SGLLQNLAELRELYLDGAN----ISAPGIEWCQALSSLVPKLQVLSLSSCYLSG-PIHPS 230
           S    NL+++  + +        I         AL  L P L+ L + +  L   P    
Sbjct: 73  SHSFYNLSKVTHIEIRNTRNLTYIDP------DALKEL-PLLKFLGIFNTGLKMFPDLTK 125

Query: 231 LAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTS----LRLSHSRLNGTFPEKILQVHTLE 286
           +       ++ +  N  ++ +P     F  L +    L+L ++    +          L+
Sbjct: 126 VYSTDIFFILEITDNPYMTSIPV--NAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLD 182

Query: 287 TLDLSGNSLLQGSLPD--FPK-NSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDL 338
            + L+ N  L   +    F    S    L +S T+ + +    + +LK L   + 
Sbjct: 183 AVYLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 79.5 bits (196), Expect = 8e-16
 Identities = 44/241 (18%), Positives = 90/241 (37%), Gaps = 23/241 (9%)

Query: 379 NLTHLDLSYNAL---PGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFS-LPMLQQLQL 434
           +        + +   P  +         N + +      L   I    FS    L+++++
Sbjct: 10  SNRVFLCQESKVTEIPSDLPR-------NAIELRFVLTKLR-VIQKGAFSGFGDLEKIEI 61

Query: 435 AENKFGGLIPEFSNASSSALDTIDLS-GNRLEGPIPMSIFD-LRNLKILILSSNKLNGTV 492
           ++N    +I     ++   L  I +   N L   I    F  L NL+ L++S+  +   +
Sbjct: 62  SQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQNLPNLQYLLISNTGIK-HL 119

Query: 493 QLAAIQRLHNLAKLELSYNN--LTVNAGSDSSFPSQVRTLRLASCKLRVIP-NLKNQSKL 549
                        L++  N    T+   S      +   L L    ++ I  +  N ++L
Sbjct: 120 PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQL 179

Query: 550 FNLDLSD-NQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSN 608
             L+LSD N +  E+PN V+  G      L++S   + SL   + + +L  +     ++ 
Sbjct: 180 DELNLSDNNNLE-ELPNDVFH-GASGPVILDISRTRIHSLP-SYGLENLKKLRARSTYNL 236

Query: 609 Q 609
           +
Sbjct: 237 K 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 73.3 bits (180), Expect = 7e-14
 Identities = 44/250 (17%), Positives = 87/250 (34%), Gaps = 28/250 (11%)

Query: 346 SIPTSLANLTQLVYLDLSFNKFVGPIPSLHMS-----KNLTHLDLSYNALPGAISSTDWE 400
            IP+ L      + L     K    +  +         +L  +++S N +   I +  + 
Sbjct: 23  EIPSDL--PRNAIELRFVLTK----LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS 76

Query: 401 HLSNLVYVDL-RYNSLNGSIPGSLFS-LPMLQQLQLAENKFGGLIPEFSNASSSALDTID 458
           +L  L  + + + N+L   I    F  LP LQ L ++       +P+     S     +D
Sbjct: 77  NLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLD 134

Query: 459 LSGNRLEGPIPMSIFD--LRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLT-V 515
           +  N     I  + F        IL L+ N +   +  +A              NNL  +
Sbjct: 135 IQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEEL 193

Query: 516 NAGSDSSFPSQVRTLRLASCKLRVIPN--LKNQSKLFNLDLSDNQISGEIPNWVWEIGNV 573
                         L ++  ++  +P+  L+N  KL      + +   ++P        V
Sbjct: 194 PNDVFHGASG-PVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPTLE---KLV 246

Query: 574 SLQYLNLSHN 583
           +L   +L++ 
Sbjct: 247 ALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 73.3 bits (180), Expect = 8e-14
 Identities = 47/321 (14%), Positives = 89/321 (27%), Gaps = 81/321 (25%)

Query: 454 LDTIDLSGNRLEGPIPMSIFD-LRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNN 512
              +     +L   I    F    +L+ + +S N +   ++      L  L ++ +   N
Sbjct: 32  AIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 513 LTVNAGSDSSFPSQVRTLRLASCKLRVIPN--LKNQSKLFNLDLSDNQISGEIPNWVWEI 570
                                   L  I     +N   L  L +S+  I   +P+    I
Sbjct: 91  -----------------------NLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHK-I 125

Query: 571 GNVSLQYLNLSHNLLSSLQRPFSISDLSP-ITVLDLHSNQLQGNIPYPPPKAVLVDYSNN 629
            ++    L++  N+        S   LS    +L L+ N +Q                  
Sbjct: 126 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ------------------ 167

Query: 630 SFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLI 689
                I +   N           NN++  +  +    A   ++LD+S+ ++         
Sbjct: 168 ----EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-------- 215

Query: 690 KMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLG 749
                    +L    L             L        +    +P +L     L+   L 
Sbjct: 216 ---------SLPSYGLENLKK--------LRARSTYNLK---KLP-TLEKLVALMEASLT 254

Query: 750 NNKIRDTFPWWLENISSLRVL 770
                  F  W   IS L  +
Sbjct: 255 YPSHCCAFANWRRQISELHPI 275

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 71.8 bits (176), Expect = 2e-13
 Identities = 44/285 (15%), Positives = 78/285 (27%), Gaps = 58/285 (20%)

Query: 521 SSFPSQVRTLRLASCKLRVIPN--LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYL 578
           S  P     LR    KLRVI          L  +++S N +   I   V+      L  +
Sbjct: 26  SDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS-NLPKLHEI 84

Query: 579 NLSH-NLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPD 637
            +   N L  +  P +  +L  +  L + +  ++                       +PD
Sbjct: 85  RIEKANNLLYIN-PEAFQNLPNLQYLLISNTGIK----------------------HLPD 121

Query: 638 DIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKN-KLSGKMPTCLIKMSEILG 696
                                            ++LD+  N  +        + +S    
Sbjct: 122 VH--------KIHSLQ----------------KVLLDIQDNINIHTIERNSFVGLSFESV 157

Query: 697 VLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDT 756
           +L L  N +    +  F G         + N L              V+LD+   +I   
Sbjct: 158 ILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 217

Query: 757 FPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASN 801
             + LEN+  LR     +      +      +    L    L   
Sbjct: 218 PSYGLENLKKLRARSTYNLKKLPTL------EKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 71.0 bits (174), Expect = 4e-13
 Identities = 53/284 (18%), Positives = 88/284 (30%), Gaps = 61/284 (21%)

Query: 117 TEIPSGLGSLTNLTNLNLSNAGFAGQIPIQV-SGMTRLVTLDLSSLNRFGAPLKLENPNL 175
           TEIPS L    N   L          I     SG   L  +++S           +N  L
Sbjct: 22  TEIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEIS-----------QNDVL 67

Query: 176 S----GLLQNLAELRELYLDGAN----ISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPI 227
                 +  NL +L E+ ++ AN    I+       +A  +L P LQ L +S+  +    
Sbjct: 68  EVIEADVFSNLPKLHEIRIEKANNLLYINP------EAFQNL-PNLQYLLISNTGIKHLP 120

Query: 228 HPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLET 287
                      ++ +  N  +  +      F  L+                         
Sbjct: 121 DVHKIHSLQKVLLDIQDNINIHTIERNS--FVGLSFE--------------------SVI 158

Query: 288 LDLSGNSLLQGSLPD--FPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDG 345
           L L+ N +    + +  F         +  N N   +  D          LD++      
Sbjct: 159 LWLNKNGI--QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH- 215

Query: 346 SIPT-SLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYN 388
           S+P+  L NL +L        K    +P+L     L    L+Y 
Sbjct: 216 SLPSYGLENLKKLRARSTYNLKK---LPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 64.5 bits (157), Expect = 5e-11
 Identities = 47/283 (16%), Positives = 92/283 (32%), Gaps = 64/283 (22%)

Query: 236 SLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQ-VHTLETLDLSGNS 294
           +   +R     L        + F +L  + +S + +       +   +  L  + +   +
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 295 LLQGSLPD--FPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLA 352
            L   +    F    +L+ L++SNT     LPD                           
Sbjct: 91  NLL-YINPEAFQNLPNLQYLLISNTGIK-HLPDV-----------------------HKI 125

Query: 353 NLTQLVYLDLSFNKFVGPIPS---LHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVD 409
           +  Q V LD+  N  +  I     + +S     L L+ N +                   
Sbjct: 126 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ------------------ 167

Query: 410 LRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIP 469
                    I  S F+   L +L L++N     +P      +S    +D+S  R+   +P
Sbjct: 168 --------EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLP 218

Query: 470 MSIFD-LRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYN 511
               + L+ L+     + K     +L  +++L  L +  L+Y 
Sbjct: 219 SYGLENLKKLRARSTYNLK-----KLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 48.3 bits (115), Expect = 8e-06
 Identities = 33/252 (13%), Positives = 85/252 (33%), Gaps = 33/252 (13%)

Query: 698 LNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKS-LANCRNLVVLDLGN-NKIRD 755
           L      L       F G   L  ++++ N +   +     +N   L  + +   N +  
Sbjct: 35  LRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY 94

Query: 756 TFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSW 815
             P   +N+ +L+ L++ +     ++       S  +  ++D+  N     + +      
Sbjct: 95  INPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHS-LQKVLLDIQDNINIHTIERNSFVGL 152

Query: 816 KAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNN 875
                     ++  +++H                    G +++          ++ S NN
Sbjct: 153 SFESVILWLNKNGIQEIHNS---------------AFNGTQLD---------ELNLSDNN 188

Query: 876 FDGPIPEEI-GRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLAN 934
               +P ++         L++S+  +       + NL++L +      +L  ++P  L  
Sbjct: 189 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK-KLPT-LEK 244

Query: 935 LTFLSFLNLSHN 946
           L  L   +L++ 
Sbjct: 245 LVALMEASLTYP 256

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 78.2 bits (193), Expect = 9e-16
 Identities = 48/212 (22%), Positives = 85/212 (40%), Gaps = 20/212 (9%)

Query: 402 LSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSG 461
           +++ + V+    +L  ++P  L        L L+EN         +    + L  ++L  
Sbjct: 9   VASHLEVNCDKRNL-TALPPDLPKD--TTILHLSENLLYTF-SLATLMPYTRLTQLNLDR 64

Query: 462 NRLEGPIPMSIFD-LRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSD 520
             L     + +   L  L  L LS N+L         Q L  L  L++S+N LT  +   
Sbjct: 65  AELTK---LQVDGTLPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLT--SLPL 117

Query: 521 SSF--PSQVRTLRLASCKLRVIPN--LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQ 576
            +     +++ L L   +L+ +P   L    KL  L L++N ++ E+P  +   G  +L 
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLN-GLENLD 175

Query: 577 YLNLSHNLLSSLQRPFSISDLSPITVLDLHSN 608
            L L  N L ++  P        +    LH N
Sbjct: 176 TLLLQENSLYTI--PKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 75.9 bits (187), Expect = 5e-15
 Identities = 59/228 (25%), Positives = 77/228 (33%), Gaps = 34/228 (14%)

Query: 260 NLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNF 319
           +   +      L    P  +        L LS N L   SL      + L  L L     
Sbjct: 11  SHLEVNCDKRNL-TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 320 SGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKN 379
           + +     G L  L  LDL+      S+P     L  L  LD+SFN+             
Sbjct: 68  TKL--QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNR------------- 111

Query: 380 LTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLF-SLPMLQQLQLAENK 438
           LT L        GA+       L  L  + L+ N L  ++P  L    P L++L LA N 
Sbjct: 112 LTSLP------LGALR-----GLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNN 159

Query: 439 FGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSN 486
              L P         LDT+ L  N L   IP   F    L    L  N
Sbjct: 160 LTEL-PAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 48/205 (23%), Positives = 71/205 (34%), Gaps = 34/205 (16%)

Query: 236 SLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSL 295
             +++ L +N L +     L  +  LT L L  + L                        
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT----------------------- 68

Query: 296 LQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSL-ANL 354
               L        L TL LS+      LP     L  L+ LD++      S+P      L
Sbjct: 69  ---KLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGL 123

Query: 355 TQLVYLDLSFNKFVGPIPS--LHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRY 412
            +L  L L  N+    +P   L  +  L  L L+ N L   + +     L NL  + L+ 
Sbjct: 124 GELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQE 181

Query: 413 NSLNGSIPGSLFSLPMLQQLQLAEN 437
           NSL  +IP   F   +L    L  N
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 58/261 (22%), Positives = 83/261 (31%), Gaps = 67/261 (25%)

Query: 502 NLAKLELSYNNLT-VNAGSDSSFPSQVRTLRLASCKLRVIPN--LKNQSKLFNLDLSDNQ 558
           +  ++     NLT +        P     L L+   L       L   ++L  L+L   +
Sbjct: 11  SHLEVNCDKRNLTALPPD----LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

Query: 559 ISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPP 618
           ++ ++           L  L+LSHN L SL  P     L  +TVLD+  N+L        
Sbjct: 67  LT-KLQVDG---TLPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLT------- 113

Query: 619 PKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKN 678
                          S+P              L                  L  L L  N
Sbjct: 114 ---------------SLPLGA--------LRGLGE----------------LQELYLKGN 134

Query: 679 KLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLA 738
           +L    P  L    + L  L+L  N+L+   +    G   L TL L  N L  T+PK   
Sbjct: 135 ELKTLPPGLLTPTPK-LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL-YTIPKGFF 192

Query: 739 NCRNLVVLDLGNNKIRDTFPW 759
               L    L  N      PW
Sbjct: 193 GSHLLPFAFLHGN------PW 207

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 57.4 bits (139), Expect = 7e-09
 Identities = 56/277 (20%), Positives = 88/277 (31%), Gaps = 80/277 (28%)

Query: 451 SSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSY 510
            ++   ++     L   +P  +   ++  IL LS N L  T  LA +     L +L L  
Sbjct: 9   VASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLL-YTFSLATLMPYTRLTQLNLDR 64

Query: 511 NNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEI 570
             LT                         +        L  LDLS NQ+   +P     +
Sbjct: 65  AELTK------------------------LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTL 99

Query: 571 GNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNS 630
               L  L++S N L+SL    ++  L  +  L L  N+L+                   
Sbjct: 100 PA--LTVLDVSFNRLTSLP-LGALRGLGELQELYLKGNELK------------------- 137

Query: 631 FTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIK 690
              ++P  +                              L  L L+ N L+      L  
Sbjct: 138 ---TLPPGL--------LTPTPK----------------LEKLSLANNNLTELPAGLLNG 170

Query: 691 MSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGN 727
           +   L  L L+ NSL  T+   F G+  L    L+GN
Sbjct: 171 LEN-LDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 42/157 (26%), Positives = 64/157 (40%), Gaps = 19/157 (12%)

Query: 651 LSNNSITGV---IPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSG 707
               ++T +   +P+          L LS+N L       L+  +  L  LNL    L+ 
Sbjct: 17  CDKRNLTALPPDLPKDTTI------LHLSENLLYTFSLATLMPYTR-LTQLNLDRAELT- 68

Query: 708 TLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSL 767
            L V       L TLDL+ NQL  ++P        L VLD+  N++       L  +  L
Sbjct: 69  KLQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126

Query: 768 RVLVLRSNSFYGNISCRENG--DSWPKLQIVDLASNN 802
           + L L+ N     +     G     PKL+ + LA+NN
Sbjct: 127 QELYLKGN----ELKTLPPGLLTPTPKLEKLSLANNN 159

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 48/171 (28%), Positives = 72/171 (42%), Gaps = 21/171 (12%)

Query: 100 SLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLS 159
               L  LNL       T++    G+L  L  L+LS+      +P+    +  L  LD+S
Sbjct: 53  PYTRLTQLNLDRA--ELTKLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS 108

Query: 160 SLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISA--PGIEWCQALSSLVPKLQVLS 217
             NR      L      G L+ L EL+ELYL G  +    PG      L+   PKL+ LS
Sbjct: 109 F-NRLT---SLP----LGALRGLGELQELYLKGNELKTLPPG-----LLTPT-PKLEKLS 154

Query: 218 LSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSH 268
           L++  L+      L  L++L  + L +N L + +P+       L    L  
Sbjct: 155 LANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHG 204

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 3/82 (3%)

Query: 867 TSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSG 926
           T +  S N         +     L  LNL +  LT       G L  L +LDLS N L  
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT--KLQVDGTLPVLGTLDLSHNQLQ- 90

Query: 927 QIPIQLANLTFLSFLNLSHNNL 948
            +P+    L  L+ L++S N L
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRL 112

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 23/69 (33%), Positives = 33/69 (47%)

Query: 880 IPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLS 939
           +P     L +L  L++S N LT     A+  L +L+ L L  N L    P  L     L 
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151

Query: 940 FLNLSHNNL 948
            L+L++NNL
Sbjct: 152 KLSLANNNL 160

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 77.8 bits (192), Expect = 1e-15
 Identities = 54/252 (21%), Positives = 97/252 (38%), Gaps = 20/252 (7%)

Query: 307 SSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNK 366
           +      L   + +  +      L ++ ++         S+   +  L  +  L L+ NK
Sbjct: 24  AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNK 79

Query: 367 FVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSL 426
            +  I  L   KNL  L L  N +      +  + L  L  + L +N ++  I G L  L
Sbjct: 80  -LTDIKPLANLKNLGWLFLDENKV---KDLSSLKDLKKLKSLSLEHNGIS-DING-LVHL 133

Query: 427 PMLQQLQLAENKFGGLIPEFSN-ASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSS 485
           P L+ L L  NK    I + +  +  + LDT+ L  N++   +P++   L  L+ L LS 
Sbjct: 134 PQLESLYLGNNK----ITDITVLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSK 187

Query: 486 NKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKN 545
           N ++    L A+  L NL  LEL          +  S      T++     L     + +
Sbjct: 188 NHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISD 244

Query: 546 QSKLFNLDLSDN 557
                  ++  +
Sbjct: 245 DGDYEKPNVKWH 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 71.2 bits (175), Expect = 2e-13
 Identities = 49/299 (16%), Positives = 95/299 (31%), Gaps = 71/299 (23%)

Query: 481 LILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVI 540
            I     +    Q+ +        K  L   ++T     +    + +  +   +  ++ +
Sbjct: 7   TITVPTPIK---QIFSDDAFAETIKDNLKKKSVTDAVTQNE--LNSIDQIIANNSDIKSV 61

Query: 541 PNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPI 600
             ++    +  L L+ N+++ +I          +L +L L  N +  L    S+ DL  +
Sbjct: 62  QGIQYLPNVTKLFLNGNKLT-DIKPLA---NLKNLGWLFLDENKVKDLS---SLKDLKKL 114

Query: 601 TVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTL--FFSLSNNSITG 658
             L L  N +                           DI   V         L NN IT 
Sbjct: 115 KSLSLEHNGIS--------------------------DINGLVHLPQLESLYLGNNKITD 148

Query: 659 VIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCG 718
           +    L R   L  L L  N++S         +  + G+  L+                 
Sbjct: 149 I--TVLSRLTKLDTLSLEDNQIS--------DIVPLAGLTKLQ----------------- 181

Query: 719 LHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSF 777
              L L+ N +  +  ++LA  +NL VL+L + +  +       N+     +     S 
Sbjct: 182 --NLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 70.5 bits (173), Expect = 3e-13
 Identities = 37/186 (19%), Positives = 74/186 (39%), Gaps = 17/186 (9%)

Query: 425 SLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILS 484
           +     +  L +      +   +  +S  +D I  + + ++    +    L N+  L L+
Sbjct: 22  AFAETIKDNLKKKSVTDAVT-QNELNS--IDQIIANNSDIKSVQGIQ--YLPNVTKLFLN 76

Query: 485 SNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLK 544
            NKL     +  +  L NL  L L  N +  +  S       +++L L    +  I  L 
Sbjct: 77  GNKLT---DIKPLANLKNLGWLFLDENKVK-DLSSLKDLKK-LKSLSLEHNGISDINGLV 131

Query: 545 NQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLD 604
           +  +L +L L +N+I+ +I           L  L+L  N +S +     ++ L+ +  L 
Sbjct: 132 HLPQLESLYLGNNKIT-DITVLS---RLTKLDTLSLEDNQISDIV---PLAGLTKLQNLY 184

Query: 605 LHSNQL 610
           L  N +
Sbjct: 185 LSKNHI 190

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 50/276 (18%), Positives = 94/276 (34%), Gaps = 35/276 (12%)

Query: 92  IDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMT 151
           I       +       NL     + T+       L ++  +  +N+       IQ   + 
Sbjct: 14  IKQIFSDDAFAETIKDNLKKK--SVTDA-VTQNELNSIDQIIANNSDIKSVQGIQ--YLP 68

Query: 152 RLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQALSSLVP 211
            +  L L+  N+      ++       L NL  L  L+LD   +         +L  L  
Sbjct: 69  NVTKLFLNG-NKLT---DIKP------LANLKNLGWLFLDENKVKD-----LSSLKDL-K 112

Query: 212 KLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRL 271
           KL+ LSL    +S      L  L  L  + L  N +       L+    L +L L  +++
Sbjct: 113 KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI 168

Query: 272 NGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLK 331
             +    +  +  L+ L LS N +    L       +L  L L +        +   NL 
Sbjct: 169 --SDIVPLAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLV 224

Query: 332 NLSRLDLALCYFDGSI--PTSLANLTQLVYLDLSFN 365
             + +       DGS+  P  +++       ++ ++
Sbjct: 225 VPNTVKN----TDGSLVTPEIISDDGDYEKPNVKWH 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.5 bits (155), Expect = 7e-11
 Identities = 50/258 (19%), Positives = 104/258 (40%), Gaps = 33/258 (12%)

Query: 81  LDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFA 140
            +L ++S++    ++     L  +  +    +  +   +  G+  L N+T L L+     
Sbjct: 29  DNLKKKSVT----DAVTQNELNSIDQIIANNS--DIKSV-QGIQYLPNVTKLFLNGNKLT 81

Query: 141 GQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGI 200
              P+  + +  L  L L   N+      L +      L++L +L+ L L+   IS   I
Sbjct: 82  DIKPL--ANLKNLGWLFLDE-NKV---KDLSS------LKDLKKLKSLSLEHNGISD--I 127

Query: 201 EWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFN 260
                L  L P+L+ L L +  ++      L++L  L  + L+ N +   VP  LA    
Sbjct: 128 N---GLVHL-PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTK 179

Query: 261 LTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFS 320
           L +L LS + ++      +  +  L+ L+L     L   +          T+  ++ +  
Sbjct: 180 LQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL- 236

Query: 321 GVLPDSIGNLKNLSRLDL 338
            V P+ I +  +  + ++
Sbjct: 237 -VTPEIISDDGDYEKPNV 253

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.1 bits (133), Expect = 4e-08
 Identities = 47/258 (18%), Positives = 90/258 (34%), Gaps = 43/258 (16%)

Query: 698 LNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTF 757
            NL+  S++    VT      +  +  N + +     + +    N+  L L  NK+ D  
Sbjct: 29  DNLKKKSVTDA--VTQNELNSIDQIIANNSDI--KSVQGIQYLPNVTKLFLNGNKLTDIK 84

Query: 758 PWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKA 817
           P  L N+ +L  L L  N     +    +     KL+ + L  N          I+    
Sbjct: 85  P--LANLKNLGWLFLDEN----KVKDLSSLKDLKKLKSLSLEHNG---------ISDING 129

Query: 818 MMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFD 877
           +           + ++    KI D               + ++  L+   ++    N   
Sbjct: 130 L-----VHLPQLESLYLGNNKITD---------------ITVLSRLTKLDTLSLEDNQIS 169

Query: 878 GPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTF 937
             +P  +  L  L  L LS+N ++     A+  L+ L+ L+L       +     +NL  
Sbjct: 170 DIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVV 225

Query: 938 LSFLNLSHNNLVGKIPIS 955
            + +  +  +LV    IS
Sbjct: 226 PNTVKNTDGSLVTPEIIS 243

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 51/232 (21%), Positives = 91/232 (39%), Gaps = 30/232 (12%)

Query: 92  IDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMT 151
           + +  PL +LK L  L L  N     ++ S L  L  L +L+L + G +    +    + 
Sbjct: 80  LTDIKPLANLKNLGWLFLDENKV--KDL-SSLKDLKKLKSLSLEHNGISDINGL--VHLP 134

Query: 152 RLVTLDLSSLNRFGAPLKLENPNLSGL--LQNLAELRELYLDGANISAPGIEWCQALSSL 209
           +L +L L             N  ++ +  L  L +L  L L+   IS         L+ L
Sbjct: 135 QLESLYLG------------NNKITDITVLSRLTKLDTLSLEDNQISD-----IVPLAGL 177

Query: 210 VPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHS 269
             KLQ L LS  ++S     +LA L++L V+ L   + L+      ++     +++ +  
Sbjct: 178 -TKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 234

Query: 270 RLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSG 321
            L    PE I      E  ++  +     +   F     + T+  +   F G
Sbjct: 235 SL--VTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPV-TIGKAKARFHG 283

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 39/212 (18%), Positives = 72/212 (33%), Gaps = 41/212 (19%)

Query: 737 LANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIV 796
                  +  +L    + D        ++S+  ++  ++    +I   +     P +  +
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNS----DIKSVQGIQYLPNVTKL 73

Query: 797 DLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLE 856
            L  N          +T  K           N   +  +  K+ D             L+
Sbjct: 74  FLNGNK---------LTDIK-----PLANLKNLGWLFLDENKVKDL----------SSLK 109

Query: 857 MELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLES 916
            +L K+     S+    N         +  L  L  L L  N +T    + +  L +L++
Sbjct: 110 -DLKKL----KSLSLEHNGIS--DINGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDT 160

Query: 917 LDLSMNHLSGQIPIQLANLTFLSFLNLSHNNL 948
           L L  N +S  +P  LA LT L  L LS N++
Sbjct: 161 LSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 31/203 (15%), Positives = 66/203 (32%), Gaps = 45/203 (22%)

Query: 748 LGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRV 807
                I+  F    +  +      L+      +++     +    +  +   +++     
Sbjct: 9   TVPTPIKQIFS--DDAFAETIKDNLKKK----SVTDAVTQNELNSIDQIIANNSD----- 57

Query: 808 PQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFT 867
               I S + +     +   N   +     K+ D               ++ +  L    
Sbjct: 58  ----IKSVQGI-----QYLPNVTKLFLNGNKLTD---------------IKPLANLKNLG 93

Query: 868 SIDFSRNNFDGPIP--EEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLS 925
            +    N     +     +  LK L  L+L  N ++    + + +L QLESL L  N ++
Sbjct: 94  WLFLDENK----VKDLSSLKDLKKLKSLSLEHNGIS--DINGLVHLPQLESLYLGNNKIT 147

Query: 926 GQIPIQLANLTFLSFLNLSHNNL 948
                 L+ LT L  L+L  N +
Sbjct: 148 DITV--LSRLTKLDTLSLEDNQI 168

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 75.7 bits (186), Expect = 1e-14
 Identities = 49/214 (22%), Positives = 78/214 (36%), Gaps = 48/214 (22%)

Query: 371 IPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQ 430
           +P   +      LDLS+N L    +      L+NL  + L +N LN  I    F      
Sbjct: 33  VPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFV----- 85

Query: 431 QLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFD-LRNLKILILSSNKLN 489
                      +           L  +DLS N L   +   +F  L+ L++L+L +N + 
Sbjct: 86  ----------PV---------PNLRYLDLSSNHLHT-LDEFLFSDLQALEVLLLYNNHIV 125

Query: 490 GTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKL 549
             V   A + +  L KL LS N ++        FP              +I +     KL
Sbjct: 126 -VVDRNAFEDMAQLQKLYLSQNQIS-------RFPV------------ELIKDGNKLPKL 165

Query: 550 FNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHN 583
             LDLS N++       + ++       L L +N
Sbjct: 166 MLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 67.2 bits (164), Expect = 8e-12
 Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 6/113 (5%)

Query: 502 NLAKLELSYNNLT-VNAGSDSSFPSQVRTLRLASCKLRVIPN--LKNQSKLFNLDLSDNQ 558
             A L+LS+NNL+ + A    +  + + +L L+   L  I +        L  LDLS N 
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99

Query: 559 ISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQ 611
           +   +  +++     +L+ L L +N +  +    +  D++ +  L L  NQ+ 
Sbjct: 100 LH-TLDEFLFS-DLQALEVLLLYNNHIVVVD-RNAFEDMAQLQKLYLSQNQIS 149

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 63.3 bits (154), Expect = 1e-10
 Identities = 34/166 (20%), Positives = 58/166 (34%), Gaps = 16/166 (9%)

Query: 183 AELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHP-SLAKLQSLSVIR 241
           +    L L   N+S   +      + L   L  L LS  +L+  I   +   + +L  + 
Sbjct: 39  SYTALLDLSHNNLSR--LRAEWTPTRL-TNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLD 94

Query: 242 LDQNDLLSPVPEFLADFFNLTSLRLSHSRL----NGTFPEKILQVHTLETLDLSGNSLLQ 297
           L  N L +      +D   L  L L ++ +       F      +  L+ L LS N + +
Sbjct: 95  LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE----DMAQLQKLYLSQNQISR 150

Query: 298 ---GSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLAL 340
                + D  K   L  L LS+     +    +  L    +  L L
Sbjct: 151 FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYL 196

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.5 bits (139), Expect = 9e-09
 Identities = 35/159 (22%), Positives = 56/159 (35%), Gaps = 11/159 (6%)

Query: 624 VDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPET-LCRAKYLLVLDLSKNKLSG 682
           +  S     + +P  +    S+T    LS+N+++ +  E    R   L  L LS N L+ 
Sbjct: 23  LSCSKQQLPN-VPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF 78

Query: 683 KMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRN 742
                 + +   L  L+L  N L       F     L  L L  N +      +  +   
Sbjct: 79  ISSEAFVPVPN-LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQ 137

Query: 743 LVVLDLGNNKIR----DTFPWWLENISSLRVLVLRSNSF 777
           L  L L  N+I     +        +  L +L L SN  
Sbjct: 138 LQKLYLSQNQISRFPVELIKDG-NKLPKLMLLDLSSNKL 175

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.8 bits (137), Expect = 2e-08
 Identities = 45/234 (19%), Positives = 75/234 (32%), Gaps = 51/234 (21%)

Query: 54  RMVQWSQSNDC-----CTWSGVDCDEAGRVIGLDLSEESISAGIDNSSPLFSLKYLQSLN 108
           ++        C     C  + + C          L   ++   + +            L+
Sbjct: 2   KLASGRSVVSCPANCLCASNILSC------SKQQLP--NVPQSLPSY--------TALLD 45

Query: 109 LAFNMFNATEIPSG--LGSLTNLTNLNLSNAGFAGQIPIQV-SGMTRLVTLDLSS--LNR 163
           L+ N  N + + +      LTNL +L LS+      I  +    +  L  LDLSS  L+ 
Sbjct: 46  LSHN--NLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHT 102

Query: 164 FGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYL 223
                         L  +L  L  L L   +I    ++   A   +  +LQ L LS   +
Sbjct: 103 LD----------EFLFSDLQALEVLLLYNNHIVV--VDR-NAFEDM-AQLQKLYLSQNQI 148

Query: 224 SGPIHP----SLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNG 273
           S            KL  L ++ L  N L         D   L +   +   L+ 
Sbjct: 149 SR-FPVELIKDGNKLPKLMLLDLSSNKLKKLPLT---DLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.8 bits (137), Expect = 2e-08
 Identities = 44/205 (21%), Positives = 65/205 (31%), Gaps = 52/205 (25%)

Query: 573 VSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFT 632
                L+LSHN LS L+  ++ + L+ +  L L  N L                      
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN--------------------- 77

Query: 633 SSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMS 692
             I  +         F  + N                L  LDLS N L          + 
Sbjct: 78  -FISSEA--------FVPVPN----------------LRYLDLSSNHLHTLDEFLFSDLQ 112

Query: 693 EILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVP----KSLANCRNLVVLDL 748
             L VL L  N +       F     L  L L+ NQ+    P    K       L++LDL
Sbjct: 113 A-LEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNKLPKLMLLDL 170

Query: 749 GNNKIRDTFPWWLENISSLRVLVLR 773
            +NK++      L+ + +     L 
Sbjct: 171 SSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 55.6 bits (134), Expect = 4e-08
 Identities = 43/163 (26%), Positives = 64/163 (39%), Gaps = 19/163 (11%)

Query: 236 SLSVIRLDQNDLLSPVPE-FLADFFNLTSLRLSHSRL----NGTFPEKILQVHTLETLDL 290
             +++ L  N+L     E       NL SL LSH+ L    +  F    + V  L  LDL
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF----VPVPNLRYLDL 95

Query: 291 SGNSLLQGSLPD--FPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIP 348
           S N L   +L +  F    +L  L+L N +   V  ++  ++  L +L L+        P
Sbjct: 96  SSNHL--HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFP 152

Query: 349 ----TSLANLTQLVYLDLSFNKFVG-PIPSLHMSKNLTHLDLS 386
                    L +L+ LDLS NK    P+  L          L 
Sbjct: 153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 9/110 (8%)

Query: 697 VLNLRGNSLSGTLS-VTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRD 755
           +L+L  N+LS   +  T      LH+L L+ N L     ++     NL  LDL +N +  
Sbjct: 43  LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH- 101

Query: 756 TFPWW-LENISSLRVLVLRSNSFYGNISCRENG--DSWPKLQIVDLASNN 802
           T   +   ++ +L VL+L +N    +I   +    +   +LQ + L+ N 
Sbjct: 102 TLDEFLFSDLQALEVLLLYNN----HIVVVDRNAFEDMAQLQKLYLSQNQ 147

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 45.6 bits (108), Expect = 5e-05
 Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 3/84 (3%)

Query: 867 TSIDFSRNNFDGPIPEEI-GRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLS 925
             +D S NN      E    RL +LH L LS N L      A   +  L  LDLS NHL 
Sbjct: 42  ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH 101

Query: 926 GQIPIQ-LANLTFLSFLNLSHNNL 948
             +     ++L  L  L L +N++
Sbjct: 102 -TLDEFLFSDLQALEVLLLYNNHI 124

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 19/62 (30%), Positives = 27/62 (43%)

Query: 887 LKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHN 946
           + +L  L+LS N L         +LQ LE L L  NH+         ++  L  L LS N
Sbjct: 87  VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146

Query: 947 NL 948
            +
Sbjct: 147 QI 148

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 5/67 (7%)

Query: 886 RLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIP----IQLANLTFLSFL 941
            L++L  L L  N +     +A  ++ QL+ L LS N +S + P         L  L  L
Sbjct: 110 DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLL 168

Query: 942 NLSHNNL 948
           +LS N L
Sbjct: 169 DLSSNKL 175

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 74.7 bits (184), Expect = 3e-14
 Identities = 59/349 (16%), Positives = 112/349 (32%), Gaps = 76/349 (21%)

Query: 450 SSSALDTIDLSGNRL--EG--PIPMSIFDLRNLKILILSSNKLN--GTVQLA-AIQRLHN 502
           +  +++   L  + +  E    +   + +  ++K ++LS N +       L+  I    +
Sbjct: 2   ARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKD 61

Query: 503 LAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGE 562
           L   E S                +V+     + +L ++  L    KL  + LSDN     
Sbjct: 62  LEIAEFSDIFT-----------GRVKDEIPEALRL-LLQALLKCPKLHTVRLSDNAFGPT 109

Query: 563 IPNWVWEI--GNVSLQYLNLSHN------------LLSSLQRPFSISDLSPITVLDLHSN 608
               + +    +  L++L L +N             L  L       +  P+  +    N
Sbjct: 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169

Query: 609 QLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSIT-----GVIPET 663
           +L+                 N           +         +  N I       ++ E 
Sbjct: 170 RLE-----------------NGSMKEWAKTFQSHRLLH-TVKMVQNGIRPEGIEHLLLEG 211

Query: 664 LCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGV------LNLRGNSLS--GTLSV---- 711
           L   + L VLDL  N  +         ++  L        L L    LS  G  +V    
Sbjct: 212 LAYCQELKVLDLQDNTFT---HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF 268

Query: 712 TFPGNCGLHTLDLNGNQLGGTVPKSLA-----NCRNLVVLDLGNNKIRD 755
           +   N GL TL L  N++     ++L         +L+ L+L  N+  +
Sbjct: 269 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 71.7 bits (176), Expect = 3e-13
 Identities = 65/363 (17%), Positives = 120/363 (33%), Gaps = 88/363 (24%)

Query: 284 TLETLDLSGNSL----LQGSLPDFPKNSSLRTLMLSNTNFSG----VLPDSIGNLKNLSR 335
           ++E   L  +++     +       ++ S++ ++LS           L ++I + K+L  
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 336 LDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAIS 395
            + +  +           L  L+              +L     L  + LS N    A  
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLL-------------QALLKCPKLHTVRLSDN----AFG 107

Query: 396 STDWEHL-------SNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSN 448
            T  E L       + L ++ L  N L G   G+  +   LQ+L + +            
Sbjct: 108 PTAQEPLIDFLSKHTPLEHLYLHNNGL-GPQAGAKIA-RALQELAVNKKA---------- 155

Query: 449 ASSSALDTIDLSGNRLEGP----IPMSIFDLRNLKILILSSNKLN--GTVQL--AAIQRL 500
            ++  L +I    NRLE         +    R L  + +  N +   G   L    +   
Sbjct: 156 KNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC 215

Query: 501 HNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQIS 560
             L  L+L  N  T    S            LA         LK+   L  L L+D  +S
Sbjct: 216 QELKVLDLQDNTFTHLGSSA-----------LAIA-------LKSWPNLRELGLNDCLLS 257

Query: 561 GE----IPNWVWEIGNVSLQYLNLSHN---------LLSSLQRPFSISDLSPITVLDLHS 607
                 + +   ++ N+ LQ L L +N         L + +        +  +  L+L+ 
Sbjct: 258 ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK-----MPDLLFLELNG 312

Query: 608 NQL 610
           N+ 
Sbjct: 313 NRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 69.0 bits (169), Expect = 2e-12
 Identities = 54/374 (14%), Positives = 104/374 (27%), Gaps = 97/374 (25%)

Query: 470 MSIFDLRNLKILILSSNKLN--GTVQLA-AIQRLHNLAKLELSYNNLTVNAGSDSSFPSQ 526
           M+ F +       L  + +       +   +    ++ ++ LS N +   A         
Sbjct: 1   MARFSIEGKS---LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAAR------- 50

Query: 527 VRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQIS---GEIPNWVWEIG-----NVSLQYL 578
                L+         + ++  L   + SD        EIP  +  +         L  +
Sbjct: 51  ----WLSEN-------IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV 99

Query: 579 NLSHNLLSSL-QRPFS--ISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSI 635
            LS N      Q P    +S  +P+  L LH+N                           
Sbjct: 100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-------------------------- 133

Query: 636 PDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEIL 695
              +G      +  +L   ++     +    A  L  +   +N+L       + + ++  
Sbjct: 134 ---LGPQAGAKIARALQELAVN----KKAKNAPPLRSIICGRNRLENG---SMKEWAKTF 183

Query: 696 GV------LNLRGNSL-----SGTLSVTFPGNCGLHTLDLNGNQLGGT----VPKSLANC 740
                   + +  N +        L         L  LDL  N         +  +L + 
Sbjct: 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243

Query: 741 RNLVVLDLGNNKIRDTFPWWL------ENISSLRVLVLRSNSFYGNISCRENGDS----W 790
            NL  L L +  +       +           L+ L L+ N      + R          
Sbjct: 244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI-ELDAVRTLKTVIDEKM 302

Query: 791 PKLQIVDLASNNFG 804
           P L  ++L  N F 
Sbjct: 303 PDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 67.0 bits (164), Expect = 9e-12
 Identities = 57/330 (17%), Positives = 105/330 (31%), Gaps = 64/330 (19%)

Query: 80  GLDLSEESISA-GIDN-SSPLFSLKYLQSLNLAFNMFN---ATEIPSGLGSLTNLTNLNL 134
           G  L  ++I+     +  + L     ++ + L+ N      A  +   + S  +L     
Sbjct: 8   GKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 67

Query: 135 SNAGFAGQIPIQVSGM----------TRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAE 184
           S+             +           +L T+ LS  N FG         L   L     
Sbjct: 68  SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD-NAFGP---TAQEPLIDFLSKHTP 123

Query: 185 LRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQ 244
           L  LYL    +          ++  + +L V                     L  I   +
Sbjct: 124 LEHLYLHNNGLGPQA---GAKIARALQELAVNK------------KAKNAPPLRSIICGR 168

Query: 245 NDLLSPVPEFLADFF----NLTSLRLSHSRLN----GTFPEKILQVHT-LETLDLSGNSL 295
           N L +   +  A  F     L ++++  + +          + L     L+ LDL  N+ 
Sbjct: 169 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228

Query: 296 -------LQGSLPDFPKNSSLRTLMLSNTNFSGV----LPDSIGNLKN--LSRLDLALCY 342
                  L  +L       +LR L L++   S      + D+   L+N  L  L L    
Sbjct: 229 THLGSSALAIAL---KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285

Query: 343 FDGSIPTSLA-----NLTQLVYLDLSFNKF 367
            +     +L       +  L++L+L+ N+F
Sbjct: 286 IELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 65.1 bits (159), Expect = 3e-11
 Identities = 54/322 (16%), Positives = 102/322 (31%), Gaps = 47/322 (14%)

Query: 104 LQSLNLAFNMFN---ATEIPSGLGSLTNLTNLNLSNAGF----AGQIPIQVSGMTRLVTL 156
           ++  +L  +         + + L    ++  + LS        A  +   ++    L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 157 DLS--SLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEW-CQALSSLVPKL 213
           + S     R    +      L   L    +L  + L          E     LS     L
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH-TPL 124

Query: 214 QVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNG 273
           + L L +  L     P      + ++  L  N      P        L S+    +RL  
Sbjct: 125 EHLYLHNNGLG----PQAGAKIARALQELAVNKKAKNAP-------PLRSIICGRNRLEN 173

Query: 274 TFPEKI---LQVH-TLETLDLSGNSL----LQGSLPD-FPKNSSLRTLMLSNTNFSG--- 321
              ++     Q H  L T+ +  N +    ++  L +       L+ L L +  F+    
Sbjct: 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS 233

Query: 322 -VLPDSIGNLKNLSRLDLALCYFDG----SIPTSLANL--TQLVYLDLSFNKF----VGP 370
             L  ++ +  NL  L L  C        ++  + + L    L  L L +N+     V  
Sbjct: 234 SALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT 293

Query: 371 IPSLHMSKN--LTHLDLSYNAL 390
           + ++   K   L  L+L+ N  
Sbjct: 294 LKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 60.1 bits (146), Expect = 2e-09
 Identities = 57/329 (17%), Positives = 98/329 (29%), Gaps = 76/329 (23%)

Query: 175 LSGLLQNLAELRELYLDGANISAPGIEWCQALSSLV---PKLQVLSLSSCYLSGPIHPSL 231
           +  +L     ++E+ L G  I   G E  + LS  +     L++   S  +         
Sbjct: 24  VFAVLLEDDSVKEIVLSGNTI---GTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIP 80

Query: 232 AKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKI---LQVHT-LET 287
             L+ L               + L     L ++RLS +    T  E +   L  HT LE 
Sbjct: 81  EALRLLL--------------QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEH 126

Query: 288 LDLSGNSL-------------LQGSLPDFPKNSSLRTLMLSNTNFSGV----LPDSIGNL 330
           L L  N L                          LR+++                +  + 
Sbjct: 127 LYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186

Query: 331 KNLSRLDLALCYF-----DGSIPTSLANLTQLVYLDLSFNKFVGPI------PSLHMSKN 379
           + L  + +          +  +   LA   +L  LDL  N F   +       +L    N
Sbjct: 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF-THLGSSALAIALKSWPN 245

Query: 380 LTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKF 439
           L  L L+       +S+     + +                 S      LQ L+L  N+ 
Sbjct: 246 LRELGLNDCL----LSARGAAAVVDAF---------------SKLENIGLQTLRLQYNEI 286

Query: 440 GG----LIPEFSNASSSALDTIDLSGNRL 464
                  +    +     L  ++L+GNR 
Sbjct: 287 ELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 59/354 (16%), Positives = 95/354 (26%), Gaps = 103/354 (29%)

Query: 650 SLSNNSITGV----IPETLCRAKYLLVLDLSKNKLSGKMPTCL---IKMSEILGVLNLRG 702
           SL  ++IT      +   L     +  + LS N +  +    L   I   + L +     
Sbjct: 10  SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 69

Query: 703 NSLSGTLSVTFPG----------NCGLHTLDLNGNQLGGT----VPKSLANCRNLVVLDL 748
                                     LHT+ L+ N  G T    +   L+    L  L L
Sbjct: 70  IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 129

Query: 749 GNNKIRD-------------TFPWWLENISSLRVLVLRSNSFYGNISCRENGD---SWPK 792
            NN +                     +N   LR ++   N    N S +E      S   
Sbjct: 130 HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL-ENGSMKEWAKTFQSHRL 188

Query: 793 LQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTS 852
           L  V +  N                                                   
Sbjct: 189 LHTVKMVQNGI-----------------------------------------------RP 201

Query: 853 KGLEMELVKILSIFTSI---DFSRNNF--DG--PIPEEIGRLKSLHGLNLSQNALTGP-- 903
           +G+E  L++ L+    +   D   N F   G   +   +    +L  L L+   L+    
Sbjct: 202 EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261

Query: 904 --IPSAIGNL--QQLESLDLSMNHLSGQIPIQLA-----NLTFLSFLNLSHNNL 948
             +  A   L    L++L L  N +       L       +  L FL L+ N  
Sbjct: 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 56.6 bits (137), Expect = 2e-08
 Identities = 56/265 (21%), Positives = 89/265 (33%), Gaps = 46/265 (17%)

Query: 98  LFSLKYLQSLNLAFNMFN--ATEIPSGLGSL-------TNLTNLNLS-NA-GFAGQIPI- 145
           + S K L+    +         EIP  L  L         L  + LS NA G   Q P+ 
Sbjct: 56  IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLI 115

Query: 146 -QVSGMTRLVTLDLSSLNRFGAP------LKLENPNLSGLLQNLAELRELYLDGANISAP 198
             +S  T L  L L + N  G          L+   ++   +N   LR +      +   
Sbjct: 116 DFLSKHTPLEHLYLHN-NGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG 174

Query: 199 GIE-WCQALSSLVPKLQVLSLSSCYL-----SGPIHPSLAKLQSLSVIRLDQNDL----L 248
            ++ W +   S    L  + +    +        +   LA  Q L V+ L  N       
Sbjct: 175 SMKEWAKTFQSH-RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS 233

Query: 249 SPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQV------HTLETLDLSGNSL------- 295
           S +   L  + NL  L L+   L+      ++          L+TL L  N +       
Sbjct: 234 SALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT 293

Query: 296 LQGSLPDFPKNSSLRTLMLSNTNFS 320
           L+  + +  K   L  L L+   FS
Sbjct: 294 LKTVIDE--KMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 39/292 (13%), Positives = 97/292 (33%), Gaps = 49/292 (16%)

Query: 695 LGVLNLRGNSLSG----TLSVTFPGNCGLHTLDLNGNQLGGT----VPKSLANCRNLVVL 746
           +   +L+ ++++     ++      +  +  + L+GN +G      + +++A+ ++L + 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 747 DLGNNKIRDTFPWW----------LENISSLRVLVLRSNSFYGNISCRENGD---SWPKL 793
           +  +                    L     L  + L  N+F G  +     D       L
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF-GPTAQEPLIDFLSKHTPL 124

Query: 794 QIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSK 853
           + + L +N  G         +   +     E   N K  +   L+           + + 
Sbjct: 125 EHLYLHNNGLG-------PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR---LENG 174

Query: 854 GLE--MELVKILSIFTSIDFSRNNF-----DGPIPEEIGRLKSLHGLNLSQNALTGP--- 903
            ++   +  +   +  ++   +N       +  + E +   + L  L+L  N  T     
Sbjct: 175 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS 234

Query: 904 -IPSAIGNLQQLESLDLSMNHLSGQIPIQLANL------TFLSFLNLSHNNL 948
            +  A+ +   L  L L+   LS +    + +         L  L L +N +
Sbjct: 235 ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 75.4 bits (185), Expect = 5e-14
 Identities = 63/427 (14%), Positives = 128/427 (29%), Gaps = 41/427 (9%)

Query: 125 SLTNLTNLNLSNAGF--AGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNL 182
           +L  L +++             +  +    L TL L   + F          L  ++ + 
Sbjct: 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFT------TDGLLSIVTHC 163

Query: 183 AELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKL----QSLS 238
            +++ L ++ ++ S    +W   L+     L+VL+      +      L  +    +SL 
Sbjct: 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV 223

Query: 239 VIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLL-- 296
            +++   ++L  V  F     NL          +   PEK + +     L   G S +  
Sbjct: 224 SVKVGDFEILELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP 282

Query: 297 QGSLPDFPKNSSLRTLMLSN-TNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLT 355
                 FP  + +R L L      +      I    NL  L+      D  +        
Sbjct: 283 NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCK 342

Query: 356 QLVYLDLSFNKFVGPIPSLHMS-------------KNLTHLDLSYNAL--PGAIS-STDW 399
           QL  L +        +                   + L ++ +  + +      S  T  
Sbjct: 343 QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYL 402

Query: 400 EHLSNLVYVDLRYNS------LNGSIPGSLFSLPMLQQLQLAEN--KFGGLIPEFSNASS 451
           ++L +   V L          L+  +   L     L++            L   +    S
Sbjct: 403 KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYS 462

Query: 452 SALDTIDLSGNRLEGPIPMSIFD-LRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSY 510
             +  + L          M       NL+ L +     +     AA+ +L +L  L +  
Sbjct: 463 PNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQG 522

Query: 511 NNLTVNA 517
              ++  
Sbjct: 523 YRASMTG 529

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 63.4 bits (154), Expect = 2e-10
 Identities = 66/457 (14%), Positives = 142/457 (31%), Gaps = 54/457 (11%)

Query: 173 PNLSGL-LQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLS--GPIHP 229
           PNL  L L+         L   N       W   +S+ + +L+ +      +S       
Sbjct: 73  PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRL 132

Query: 230 SLAKLQSLSVIRLDQNDLLSP--VPEFLADFFNLTSLRLSHSRLNGTFPEKILQV----H 283
           + A+   L  ++LD+    +   +   +     + +L +  S  +    + + ++     
Sbjct: 133 AKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNT 192

Query: 284 TLETLDLSGNSLLQGSLPD----FPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLA 339
           +LE L+       + S  D         SL ++ + +      L        NL      
Sbjct: 193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGG 251

Query: 340 LCYFDGSIPTSLANLTQLVYLDLSFNKFVGP--IPSLH-MSKNLTHLDLSYNALPGAISS 396
               D  +P    NL     L      ++GP  +P L   +  +  LDL Y  L      
Sbjct: 252 SLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHC 311

Query: 397 TDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSA--- 453
           T  +   NL  ++ R    +  +         L++L++        + +     S     
Sbjct: 312 TLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI 371

Query: 454 --------LDTIDLSGNRL--EG--PIPMSIFDLRNLKILILSSNKLNGTVQL-----AA 496
                   L+ + +  + +  E    I   + +L + ++++L   +    + L     + 
Sbjct: 372 ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL 431

Query: 497 IQRLHNLAKLELSYNNLTVNAGSDSSF------PSQVRTLRLASCKLR---VIPNLKNQS 547
           +     L +         +   +D            VR + L         ++   +   
Sbjct: 432 LIGCKKLRRFAFYLRQGGL---TDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCP 488

Query: 548 KLFNLDLSDNQISGEIPNWVWEIGNV--SLQYLNLSH 582
            L  L++     S      +        SL+YL +  
Sbjct: 489 NLQKLEMRGCCFSER---AIAAAVTKLPSLRYLWVQG 522

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 61.9 bits (150), Expect = 7e-10
 Identities = 70/552 (12%), Positives = 151/552 (27%), Gaps = 82/552 (14%)

Query: 233 KLQSLSVIRLDQNDLLSPVPEFLAD-FFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLS 291
           K+ S +   +      +  P+ L+  F NL SL+L        F    L           
Sbjct: 46  KIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFN---LIPENWGGYVTP 102

Query: 292 GNSLLQGSLPDFPKNSSLRTLMLSNTNFS--GVLPDSIGNLKNLSRLDLALCY--FDGSI 347
             + +  +L        L+++       S   +   +     +L  L L  C       +
Sbjct: 103 WVTEISNNLR------QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGL 156

Query: 348 PTSLANLTQLVYLDLSFNKFV--GPIPSLHMSKNLTHLDLSYNALPGAISSTD------W 399
            + + +  ++  L +  + F          ++++ T L++    +      +        
Sbjct: 157 LSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA 216

Query: 400 EHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDL 459
            +  +LV V +        + G   +   L++           +PE             L
Sbjct: 217 RNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRL 275

Query: 460 SGNRLEGPIPMSIFDL-RNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNA- 517
             + +       +F     ++ L L    L        IQ+  NL  LE   N +     
Sbjct: 276 GLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGL 334

Query: 518 GSDSSFPSQVRTLRLASCKLRVIPNL--------------KNQSKLFNLDLSDNQISGEI 563
              + +  Q++ LR+                         +   +L  + +  + I+   
Sbjct: 335 EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDIT--- 391

Query: 564 PNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVL 623
                   N SL+ +      L   +    +     IT                      
Sbjct: 392 --------NESLESIGTYLKNLCDFRL-VLLDREERIT---------------------- 420

Query: 624 VDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCR-AKYLLVLDLSKNKLSG 682
            D   ++   S+         F     L    +T +    + + +  +  + L     S 
Sbjct: 421 -DLPLDNGVRSLLIGCKKLRRFAF--YLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESD 477

Query: 683 KMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNC-GLHTLDLNGNQLGGTVPKSLA--- 738
           +      +    L  L +RG   S             L  L + G +   T    +    
Sbjct: 478 EGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMAR 537

Query: 739 NCRNLVVLDLGN 750
              N+ ++    
Sbjct: 538 PYWNIELIPSRR 549

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 56.1 bits (135), Expect = 5e-08
 Identities = 57/368 (15%), Positives = 105/368 (28%), Gaps = 54/368 (14%)

Query: 100 SLKYLQSLNLAFNMFNATEIPSGLGSL----TNLTNLNLSNAGFAGQ----IPIQVSGMT 151
             + +++L +  + F + +    L  L    T+L  LN     FA      +        
Sbjct: 162 HCRKIKTLLMEESSF-SEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCR 220

Query: 152 RLVTLDLS---------------SLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANIS 196
            LV++ +                +L  F      E+  +     NL   R+L   G  +S
Sbjct: 221 SLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLG--LS 278

Query: 197 APGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLA-KLQSLSVIRLDQNDLLSPVPEFL 255
             G      L     +++ L L    L    H +L  K  +L V+          +    
Sbjct: 279 YMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLA 338

Query: 256 ADFFNLTSLRLSHSRLNGTFPEKILQV------------HTLETLDLSGNSLLQGSLPDF 303
                L  LR+          ++   V              LE + +  + +   SL   
Sbjct: 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI 398

Query: 304 ----PKNSSLRTLMLSNTNFSGVLPDSIG------NLKNLSRLDLALCYF---DGSIPTS 350
                     R ++L        LP   G        K L R    L      D  +   
Sbjct: 399 GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI 458

Query: 351 LANLTQLVYLDLSFNKF--VGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYV 408
                 + ++ L +      G +       NL  L++          +     L +L Y+
Sbjct: 459 GQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYL 518

Query: 409 DLRYNSLN 416
            ++    +
Sbjct: 519 WVQGYRAS 526

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 51.5 bits (123), Expect = 1e-06
 Identities = 43/302 (14%), Positives = 92/302 (30%), Gaps = 33/302 (10%)

Query: 104 LQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNA-GFAGQIPIQVSGMTRLVTLDLSS-- 160
           ++ L+L + +    +  + +    NL  L   N  G  G   +      +L  L +    
Sbjct: 295 IRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVL-AQYCKQLKRLRIERGA 353

Query: 161 --LNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSL 218
                      +    L  L Q   EL  + +  ++I+   +E   ++ + +  L    L
Sbjct: 354 DEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLE---SIGTYLKNLCDFRL 410

Query: 219 SSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSH--SRLNGTFP 276
                         + + ++ + LD     + V   L     L           L     
Sbjct: 411 VLL----------DREERITDLPLD-----NGVRSLLIGCKKLRRFAFYLRQGGLTDLGL 455

Query: 277 EKILQ-VHTLETLDLSGNSLLQGSLPDFPKN-SSLRTLMLSNTNFSGV-LPDSIGNLKNL 333
             I Q    +  + L         L +F +   +L+ L +    FS   +  ++  L +L
Sbjct: 456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSL 515

Query: 334 SRLDLALCYF---DGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNAL 390
             L +           +         +  +       V     +   ++  H+ L+Y +L
Sbjct: 516 RYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHPAHI-LAYYSL 574

Query: 391 PG 392
            G
Sbjct: 575 AG 576

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 72.1 bits (176), Expect = 4e-13
 Identities = 42/286 (14%), Positives = 82/286 (28%), Gaps = 38/286 (13%)

Query: 332 NLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALP 391
           +L    L       +               L  ++           + L   +LS     
Sbjct: 303 DLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKS- 361

Query: 392 GAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASS 451
             +  ++ E    L  ++        +I   + +L  L   +     F  L         
Sbjct: 362 -TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLK----AVDP 416

Query: 452 SALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYN 511
                +D   ++      +   +  ++++L L+   L     L  +++L  +  L+LS+N
Sbjct: 417 MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL---TVLCHLEQLLLVTHLDLSHN 473

Query: 512 NLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIG 571
            L                         + P L     L  L  SDN +   +      + 
Sbjct: 474 RLR-----------------------ALPPALAALRCLEVLQASDNALE-NVDG----VA 505

Query: 572 N-VSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPY 616
           N   LQ L L +N L        +     + +L+L  N L      
Sbjct: 506 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 61.7 bits (149), Expect = 8e-10
 Identities = 53/355 (14%), Positives = 102/355 (28%), Gaps = 43/355 (12%)

Query: 615 PYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLD 674
           P+     V V       +      +           + + +   V   T         + 
Sbjct: 241 PHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVW 300

Query: 675 LSKNKLSGKMPTCL--IKMSEILGVLNLRGNSLSGTLSVTFPGNCG----LHTLDLNGNQ 728
           L     +                G  + +   L       +  +      L   +L+  +
Sbjct: 301 LCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEK 360

Query: 729 LGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGD 788
               +   L +C+ L  L+  N     T    +  +  L             +  +E   
Sbjct: 361 ST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPL-------------LYEKETLQ 406

Query: 789 SWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAV 848
            +  L+ VD     +   +  K +     +  +  + +     +H     +    + +  
Sbjct: 407 YFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVR----VLHLAHKDLTVLCHLEQ- 461

Query: 849 TVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAI 908
                         L + T +D S N     +P  +  L+ L  L  S NAL   +   +
Sbjct: 462 --------------LLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN-VDG-V 504

Query: 909 GNLQQLESLDLSMNHLSG-QIPIQLANLTFLSFLNLSHNNLVGKIPISTQLQSFL 962
            NL +L+ L L  N L        L +   L  LNL  N+L  +  I  +L   L
Sbjct: 505 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 559

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.5 bits (138), Expect = 1e-08
 Identities = 46/283 (16%), Positives = 79/283 (27%), Gaps = 49/283 (17%)

Query: 200 IEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQS--LSVIRLDQNDLLSPVPEFLAD 257
           +     + +L+  +    LS  + +       + +    L    L+              
Sbjct: 265 LTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTG 324

Query: 258 FFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSL------------LQGSLPDFPK 305
             +     L   R    +         L   +LS                LQ   P+   
Sbjct: 325 SDSQKECVLLKDRPE-CWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKW 383

Query: 306 NSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLD---------------------------- 337
                 L++   +      +++     L  +D                            
Sbjct: 384 CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADV 443

Query: 338 --LALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAIS 395
             L L + D ++   L  L  + +LDLS N+     P+L   + L  L  S NAL    +
Sbjct: 444 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL---EN 500

Query: 396 STDWEHLSNLVYVDLRYNSLNG-SIPGSLFSLPMLQQLQLAEN 437
                +L  L  + L  N L   +    L S P L  L L  N
Sbjct: 501 VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.1 bits (137), Expect = 2e-08
 Identities = 45/361 (12%), Positives = 99/361 (27%), Gaps = 51/361 (14%)

Query: 441 GLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRL 500
            L+             +      L       +     +  L+L  ++   +V+       
Sbjct: 234 WLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGR 293

Query: 501 HNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQIS 560
           +  + + L                    +L     +                 L  ++  
Sbjct: 294 NRPSHVWLCDLPA--------------ASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPE 339

Query: 561 GEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPK 620
               +      +  L    LS    + LQ    +     +  L+  +      I      
Sbjct: 340 CWCRDSAT---DEQLFRCELSVEKSTVLQS--ELESCKELQELEPENKWCLLTIILLMRA 394

Query: 621 AVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKL 680
              + Y   +          + +       L +  +             + VL L+   L
Sbjct: 395 LDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLE-NSVLKMEYADVRVLHLAHKDL 453

Query: 681 SGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANC 740
           +         +  +  +L +                     LDL+ N+L   +P +LA  
Sbjct: 454 T--------VLCHLEQLLLVT-------------------HLDLSHNRLR-ALPPALAAL 485

Query: 741 RNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLAS 800
           R L VL   +N + +     + N+  L+ L+L +N      +  +   S P+L +++L  
Sbjct: 486 RCLEVLQASDNALENVDG--VANLPRLQELLLCNNRL-QQSAAIQPLVSCPRLVLLNLQG 542

Query: 801 N 801
           N
Sbjct: 543 N 543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 70.3 bits (172), Expect = 2e-12
 Identities = 66/479 (13%), Positives = 143/479 (29%), Gaps = 48/479 (10%)

Query: 104 LQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNR 163
                +      A    + +     + ++ L          +   G    V   + +++ 
Sbjct: 43  WCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSS 102

Query: 164 FGAPLK--------LENPNLSGLLQNLAELRELYLDG-ANISAPGIEWCQALSSLVPKLQ 214
               L+        + +  L  + ++    + L L      S  G+    A+++    L+
Sbjct: 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGL---AAIAATCRNLK 159

Query: 215 VLSLSSCYLSGPIHPSLA-------KLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLS 267
            L L    +       L+        L SL++  L      S +   +    NL SL+L+
Sbjct: 160 ELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN 219

Query: 268 HSRLNGTFPEKILQVHTLETLDLSG------NSLLQGSLPDFPKNSSLRTLMLSNTNFSG 321
            +         + +   LE L   G        +  G          LR L         
Sbjct: 220 RAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPA 279

Query: 322 VLPDSIGNLKNLSRLDLALCYF-DGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMS-KN 379
            LP        L+ L+L+        +   L    +L  L +        +  L  + K+
Sbjct: 280 YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKD 339

Query: 380 LTHLDLSYN---ALPGAISSTDW------EHLSNLVYVDLRYNSL-NGSIPGSLFSLPML 429
           L  L +  +    +   ++ T+            L  V      + N ++     + P +
Sbjct: 340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNM 399

Query: 430 QQLQLAENKFGGLIPEFSNASSSALDTI----------DLSGNRLEGPIPMSIFDLRNLK 479
            + +L   +                  I           LSG   +          + ++
Sbjct: 400 TRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKME 459

Query: 480 ILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAG-SDSSFPSQVRTLRLASCKL 537
           +L ++    +       +    +L KLE+        A  +++S    +R+L ++SC +
Sbjct: 460 MLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 65.3 bits (159), Expect = 7e-11
 Identities = 68/451 (15%), Positives = 126/451 (27%), Gaps = 64/451 (14%)

Query: 100 SLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQ--VSGMTRLVTLD 157
           S  +L+ + L   +     +     S  N   L LS+        +    +    L  LD
Sbjct: 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELD 162

Query: 158 LSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDG--ANISAPGIEWCQALSSLVPKLQV 215
           L   +       +    LS        L  L +    + +S   +E    L +  P L+ 
Sbjct: 163 LRESDV----DDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE---RLVTRCPNLKS 215

Query: 216 LSLSSCYLSGPIHPSLAKLQSLSVIRLD------QNDLLSPVPEFLADFFNLTSLRLSHS 269
           L L+       +   L +   L  +         + D+ S +   L+    L  L     
Sbjct: 216 LKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWD 275

Query: 270 RLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKN-SSLRTLMLSNTNFSGVLPDSIG 328
            +    P        L TL+LS  ++    L         L+ L + +      L     
Sbjct: 276 AVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAS 335

Query: 329 NLKNLSRLDLALCYF----------DGSIPTSLANLTQLVYLDLSFNKF--VGPIPSLHM 376
             K+L  L +               +  + +      +L  +     +      I     
Sbjct: 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARN 395

Query: 377 SKNLTHLDLSYNALPGAISSTDW----------EHLSNLVYVDLRYNSLNGSIPGSLFSL 426
             N+T   L           T            EH  +L  + L     +          
Sbjct: 396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYA 455

Query: 427 PMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSN 486
             ++ L +A          F+  S   +  + LSG               +L+ L +   
Sbjct: 456 KKMEMLSVA----------FAGDSDLGMHHV-LSG-------------CDSLRKLEIRDC 491

Query: 487 KLNGTVQLAAIQRLHNLAKLELSYNNLTVNA 517
                  LA   +L  +  L +S  +++  A
Sbjct: 492 PFGDKALLANASKLETMRSLWMSSCSVSFGA 522

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 53.4 bits (128), Expect = 3e-07
 Identities = 78/543 (14%), Positives = 154/543 (28%), Gaps = 81/543 (14%)

Query: 233 KLQSLSVIRLDQNDLLSPVPEFLADFF-NLTSLRLSHSRLNGTFPEKILQVHTLETLDLS 291
           +++     ++   +  +  P  +   F  + S+ L        F             D  
Sbjct: 39  EIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNL---------VPDGW 89

Query: 292 GNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIG-NLKNLSRLDLALCYF--DGSIP 348
           G  +           + L  + L     +    + I  + KN   L L+ C       + 
Sbjct: 90  GGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLA 149

Query: 349 TSLANLTQLVYLDLSFNKFVGPIPS-----LHMSKNLTHLDLSYNALPGAISSTDWEHLS 403
              A    L  LDL  +                  +L  L++S   L   +S +  E L 
Sbjct: 150 AIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISC--LASEVSFSALERLV 207

Query: 404 ----NLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLA---ENKFGGLIPEFSNASSSALDT 456
               NL  + L        +   L   P L++L            +    S A S   + 
Sbjct: 208 TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKEL 267

Query: 457 IDLSGNRLEGPIPMSIF--DLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLT 514
             LSG     P  +         L  L LS   +     +  + +   L +L +      
Sbjct: 268 RCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYI-- 325

Query: 515 VNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVS 574
                D+            +CK            L  L +  ++     PN    +    
Sbjct: 326 ----EDAGLEVLAS-----TCK-----------DLRELRVFPSEPFVMEPNV--ALTEQG 363

Query: 575 LQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSS 634
           L  +++    L S+     +     +T   L +  +  N P       +  +        
Sbjct: 364 LVSVSMGCPKLESV-----LYFCRQMTNAALIT--IARNRPN------MTRFRLCIIEPK 410

Query: 635 IPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEI 694
            PD +        F ++  +             K L  L LS   L+ K+   +   ++ 
Sbjct: 411 APDYLTLEPLDIGFGAIVEH------------CKDLRRLSLS-GLLTDKVFEYIGTYAKK 457

Query: 695 LGVLNLRGNSLSGT-LSVTFPGNCGLHTLDLNGNQLGG-TVPKSLANCRNLVVLDLGNNK 752
           + +L++     S   +     G   L  L++     G   +  + +    +  L + +  
Sbjct: 458 MEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS 517

Query: 753 IRD 755
           +  
Sbjct: 518 VSF 520

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 58/241 (24%), Positives = 91/241 (37%), Gaps = 59/241 (24%)

Query: 377 SKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAE 436
           SK LT       A+P  I +       +   +DL+ N L+     +   L  L+ L L +
Sbjct: 25  SKKLT-------AIPSNIPA-------DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND 70

Query: 437 NK--------FGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFD-LRNLKILILSSNK 487
           NK        F  L           L+T+ ++ N+L+  +P+ +FD L NL  L L  N+
Sbjct: 71  NKLQTLPAGIFKEL---------KNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQ 120

Query: 488 LNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQS 547
           L  ++       L  L  L L YN L        S P  V                   +
Sbjct: 121 LK-SLPPRVFDSLTKLTYLSLGYNELQ-------SLPKGV---------------FDKLT 157

Query: 548 KLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHS 607
            L  L L +NQ+   +P   ++     L+ L L +N L  +    +   L  + +L L  
Sbjct: 158 SLKELRLYNNQLK-RVPEGAFD-KLTELKTLKLDNNQLKRVPEG-AFDSLEKLKMLQLQE 214

Query: 608 N 608
           N
Sbjct: 215 N 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 48/185 (25%), Positives = 74/185 (40%), Gaps = 13/185 (7%)

Query: 284 TLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYF 343
             + LDL  N L       F + + LR L L++     +       LKNL  L +     
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97

Query: 344 DGSIPTSL-ANLTQLVYLDLSFNKF----VGPIPSLHMSKNLTHLDLSYNALPGAISSTD 398
             ++P  +   L  L  L L  N+          SL     LT+L L YN L  ++    
Sbjct: 98  Q-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT---KLTYLSLGYNELQ-SLPKGV 152

Query: 399 WEHLSNLVYVDLRYNSLNGSIPGSLF-SLPMLQQLQLAENKFGGLIPEFSNASSSALDTI 457
           ++ L++L  + L  N L   +P   F  L  L+ L+L  N+    +PE +  S   L  +
Sbjct: 153 FDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKML 210

Query: 458 DLSGN 462
            L  N
Sbjct: 211 QLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.8 bits (130), Expect = 8e-08
 Identities = 50/213 (23%), Positives = 73/213 (34%), Gaps = 40/213 (18%)

Query: 551 NLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISD-LSPITVLDLHSNQ 609
            LDL  N++S  +P+  +      L+ L L+ N L +L  P  I   L  +  L +  N+
Sbjct: 41  KLDLQSNKLS-SLPSKAFH-RLTKLRLLYLNDNKLQTL--PAGIFKELKNLETLWVTDNK 96

Query: 610 LQ---GNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCR 666
           LQ     +         +    N   S +P  +        F SL+              
Sbjct: 97  LQALPIGVFDQLVNLAELRLDRNQLKS-LPPRV--------FDSLTK------------- 134

Query: 667 AKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNG 726
              L  L L  N+L         K++  L  L L  N L       F     L TL L+ 
Sbjct: 135 ---LTYLSLGYNELQSLPKGVFDKLTS-LKELRLYNNQLKRVPEGAFDKLTELKTLKLDN 190

Query: 727 NQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPW 759
           NQL      +  +   L +L L  N      PW
Sbjct: 191 NQLKRVPEGAFDSLEKLKMLQLQEN------PW 217

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.4 bits (108), Expect = 5e-05
 Identities = 39/173 (22%), Positives = 60/173 (34%), Gaps = 21/173 (12%)

Query: 100 SLKYLQSLNLAFNMFNATEIPSGL-GSLTNLTNLNLSNAGFAGQIPIQV-SGMTRLVTLD 157
            L  L+ L L  N      +P+G+   L NL  L +++      +PI V   +  L  L 
Sbjct: 59  RLTKLRLLYLNDNKL--QTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELR 115

Query: 158 LSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISA--PGIEWCQALSSLVPKLQV 215
           L   N+      L       +  +L +L  L L    + +   G         L   L+ 
Sbjct: 116 LDR-NQLK---SLP----PRVFDSLTKLTYLSLGYNELQSLPKG-----VFDKLT-SLKE 161

Query: 216 LSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSH 268
           L L +  L      +  KL  L  ++LD N L             L  L+L  
Sbjct: 162 LRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 65.1 bits (159), Expect = 4e-11
 Identities = 56/308 (18%), Positives = 104/308 (33%), Gaps = 72/308 (23%)

Query: 495 AAIQRLHNLAKLELSYNNLTVNAGSD-----SSFPSQVRTLRLASCKL-----RVIPNL- 543
                 H +  L+LS NNL   +  +     ++ P+ V +L L+   L       +  + 
Sbjct: 16  EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQIL 75

Query: 544 -KNQSKLFNLDLSDNQISGEIPNWVWEIG------NVSLQYLNLSHNLLSSLQRPFSISD 596
               + + +L+LS N +S +      E+         ++  L+L  N  SS     S S+
Sbjct: 76  AAIPANVTSLNLSGNFLSYK---SSDELVKTLAAIPFTITVLDLGWNDFSSK----SSSE 128

Query: 597 LSP--------ITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTL- 647
                      IT L+L  N L                S++     +       +   + 
Sbjct: 129 FKQAFSNLPASITSLNLRGNDLG-------------IKSSDELIQILAA-----IPANVN 170

Query: 648 FFSLSNNSITGVIPETLCRA-----KYLLVLDLSKNKLSGKMPTCLIKM----SEILGVL 698
             +L  N++       L +        +  LDLS N L  K    L  +       +  L
Sbjct: 171 SLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSL 230

Query: 699 NLRGNSLSGT----LSVTFPGNCGLHTLDLNGNQLGGTVPK-------SLANCRNLVVLD 747
           NL  N L G     L +       L T+ L+ + +     +       +  N + ++++D
Sbjct: 231 NLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVD 290

Query: 748 LGNNKIRD 755
               +I  
Sbjct: 291 KNGKEIHP 298

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 62.4 bits (152), Expect = 3e-10
 Identities = 46/280 (16%), Positives = 97/280 (34%), Gaps = 42/280 (15%)

Query: 374 LHMSKNLTHLDLSYNALPG----AISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSL--- 426
             +   +T LDLS N L       +        +++  ++L  NSL       L  +   
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 427 --PMLQQLQLAENKFGG----LIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDL----- 475
               +  L L+ N         + +   A    +  +DL  N                  
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 476 RNLKILILSSNKLN--GTVQLAAIQRLHN--LAKLELSYNNLTVNAGSD-----SSFPSQ 526
            ++  L L  N L    + +L  I       +  L L  NNL     ++     +S P+ 
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS 197

Query: 527 VRTLRLASCKLRV--IPNL-----KNQSKLFNLDLSDNQISGEIPNWVWEI--GNVSLQY 577
           V +L L++  L +     L        + + +L+L  N + G     +  +      LQ 
Sbjct: 198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257

Query: 578 LNLSHNLLSSLQRPF------SISDLSPITVLDLHSNQLQ 611
           + L ++++ ++ +        +  ++  I ++D +  ++ 
Sbjct: 258 VYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 60.9 bits (148), Expect = 9e-10
 Identities = 48/286 (16%), Positives = 94/286 (32%), Gaps = 48/286 (16%)

Query: 175 LSGLLQNLAELRELYLDGANISAPGIEW-CQALSSLVPKLQVLSLSSCYLSGPIHPSLAK 233
           +         +  L L   N+ +       QA ++    +  L+LS   L       L +
Sbjct: 14  VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ 73

Query: 234 L-----QSLSVIRLDQNDLLSPVPEFLADFF-----NLTSLRLSHSRLNGTFPEKILQV- 282
           +      +++ + L  N L     + L          +T L L  +  +     +  Q  
Sbjct: 74  ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF 133

Query: 283 ----HTLETLDLSGNSL-------LQGSLPDFPKNSSLRTLMLSNTNFS----GVLPDSI 327
                ++ +L+L GN L       L   L      +++ +L L   N +      L   +
Sbjct: 134 SNLPASITSLNLRGNDLGIKSSDELIQILAAI--PANVNSLNLRGNNLASKNCAELAKFL 191

Query: 328 GNL-KNLSRLDLALCYFDGSIPTSLA-----NLTQLVYLDLSFNKFVGP-----IPSLHM 376
            ++  +++ LDL+           LA         +V L+L  N   GP           
Sbjct: 192 ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDS 251

Query: 377 SKNLTHLDLSYNALPGAISSTDWEHL-------SNLVYVDLRYNSL 415
            K+L  + L Y+ +   +S    + L         ++ VD     +
Sbjct: 252 LKHLQTVYLDYDIV-KNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 58.9 bits (143), Expect = 3e-09
 Identities = 50/291 (17%), Positives = 99/291 (34%), Gaps = 44/291 (15%)

Query: 116 ATEIPSGLGSLTNLTNLNLSN-----AGFAGQIPIQVSGMTRLVTLDLSSLNRFGAP--L 168
           +  +         +T+L+LS            I    +    + +L+LS  N  G     
Sbjct: 11  SNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG-NSLGFKNSD 69

Query: 169 KLENPNLSGLLQNLAELRELYLDGANISAPGIEW-CQALSSLVPKLQVLSLSSCYLSGPI 227
           +L    +  L    A +  L L G  +S    +   + L+++   + VL L     S   
Sbjct: 70  EL----VQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS 125

Query: 228 HPSLAKL-----QSLSVIRLDQNDLLSPVPEFLADFF-----NLTSLRLSHSRLNGTFPE 277
                +       S++ + L  NDL     + L         N+ SL L  + L      
Sbjct: 126 SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCA 185

Query: 278 KILQV-----HTLETLDLSGNSLLQGSLPDF-----PKNSSLRTLMLSNTNFSGV----L 323
           ++ +       ++ +LDLS N L   S  +         + + +L L      G     L
Sbjct: 186 ELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENL 245

Query: 324 PDSIGNLKNLSRLDLALCYFDG-------SIPTSLANLTQLVYLDLSFNKF 367
                +LK+L  + L              ++  +  N+ +++ +D +  + 
Sbjct: 246 KLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 56.6 bits (137), Expect = 2e-08
 Identities = 61/361 (16%), Positives = 107/361 (29%), Gaps = 84/361 (23%)

Query: 651 LSNNSITGVIPETLCRA-----KYLLVLDLSKNKLSGK----MPTCLIKMSEILGVLNLR 701
           LS N++  +    L +A       +  L+LS N L  K    +   L  +   +  LNL 
Sbjct: 29  LSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLS 88

Query: 702 GNSLSGT----LSVTFPG-NCGLHTLDLNGNQLGGTVPKSLA-----NCRNLVVLDLGNN 751
           GN LS      L  T       +  LDL  N                   ++  L+L  N
Sbjct: 89  GNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN 148

Query: 752 KIRDTFPWWL-----ENISSLRVLVLRSNSFYGNISCRENGDSWP----KLQIVDLASNN 802
            +       L        +++  L LR N+   + +C E           +  +DL++N 
Sbjct: 149 DLGIKSSDELIQILAAIPANVNSLNLRGNNL-ASKNCAELAKFLASIPASVTSLDLSANL 207

Query: 803 FGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKI 862
            G                   ++                             L      I
Sbjct: 208 LG------------------LKS--------------------------YAELAYIFSSI 223

Query: 863 LSIFTSIDFSRNNFDGPIPEEIGRL----KSLHGLNLSQNALTGP-------IPSAIGNL 911
            +   S++   N   GP  E +  L    K L  + L  + +          + +A  N+
Sbjct: 224 PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNI 283

Query: 912 QQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLVGKIPISTQLQSFLATSFEGNKG 971
           Q++  +D +   +     I ++NL           +L+ +  I  Q              
Sbjct: 284 QKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDE 343

Query: 972 L 972
           L
Sbjct: 344 L 344

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 52.0 bits (125), Expect = 6e-07
 Identities = 57/357 (15%), Positives = 109/357 (30%), Gaps = 73/357 (20%)

Query: 306 NSSLRTLMLSNTNFSGVLPDSIG-----NLKNLSRLDLALCYFDGSIPTSLA-----NLT 355
              + +L LS  N   +    +         +++ L+L+           L         
Sbjct: 21  PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80

Query: 356 QLVYLDLSFNKF----VGPIPSL--HMSKNLTHLDLSYNALPGAISSTDWEHLS------ 403
            +  L+LS N         +      +   +T LDL +N      SS             
Sbjct: 81  NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND----FSSKSSSEFKQAFSNL 136

Query: 404 --NLVYVDLRYNSLNG----SIPGSLFSLPM-LQQLQLAENKFG----GLIPEFSNASSS 452
             ++  ++LR N L       +   L ++P  +  L L  N         + +F  +  +
Sbjct: 137 PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPA 196

Query: 453 ALDTIDLSGNRLEGPIPMSIFDL-----RNLKILILSSNKLN--GTVQLA-AIQRLHNLA 504
           ++ ++DLS N L       +  +      ++  L L  N L+      L      L +L 
Sbjct: 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ 256

Query: 505 KLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIP 564
            + L Y+ +  N   +     Q + L  A           N  K+  +D +  +I     
Sbjct: 257 TVYLDYDIVK-NMSKE-----QCKALGAA---------FPNIQKIILVDKNGKEIHPSH- 300

Query: 565 NWVWEIGNV------SLQYLNLSHNLLSSLQRPFSISDLSPI----TVLDLHSNQLQ 611
                I N+           +L +  L   Q+  +  +   I             L 
Sbjct: 301 --SIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 39/184 (21%), Positives = 61/184 (33%), Gaps = 29/184 (15%)

Query: 649 FSLSNNSITGVIPETLCRA-----KYLLVLDLSKNKLSGK----MPTCLIKMSEILGVLN 699
            +LS NS+     + L +        +  L+LS N LS K    +   L  +   + VL+
Sbjct: 56  LNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLD 115

Query: 700 LRGNSLSGT-----LSVTFPGNCGLHTLDLNGNQLGGTVPKSLA-----NCRNLVVLDLG 749
           L  N  S                 + +L+L GN LG      L         N+  L+L 
Sbjct: 116 LGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLR 175

Query: 750 NNKIRDTFPWWL-----ENISSLRVLVLRSNSFYGNISCRENGD----SWPKLQIVDLAS 800
            N +       L        +S+  L L +N   G  S  E           +  ++L  
Sbjct: 176 GNNLASKNCAELAKFLASIPASVTSLDLSANLL-GLKSYAELAYIFSSIPNHVVSLNLCL 234

Query: 801 NNFG 804
           N   
Sbjct: 235 NCLH 238

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 45/279 (16%), Positives = 86/279 (30%), Gaps = 44/279 (15%)

Query: 698 LNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLA-----NCRNLVVLDLGNNK 752
             L  +  S  +        G+ +LDL+ N L       L         ++  L+L  N 
Sbjct: 3   YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS 62

Query: 753 IRDT----FPWWLENI-SSLRVLVLRSNSFYGNISCRENGDSWP----KLQIVDLASNNF 803
           +           L  I +++  L L  N      S  E   +       + ++DL  N+F
Sbjct: 63  LGFKNSDELVQILAAIPANVTSLNLSGNFL-SYKSSDELVKTLAAIPFTITVLDLGWNDF 121

Query: 804 GGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKIL 863
             +       S            ++   ++     +       +     + L      + 
Sbjct: 122 SSK-------SSSEFKQAFSNLPASITSLNLRGNDLGI----KSSDELIQILAAIPANV- 169

Query: 864 SIFTSIDFSRNNFDGPIPEEIGRL-----KSLHGLNLSQNALTGPIPSAIG-----NLQQ 913
               S++   NN       E+ +       S+  L+LS N L     + +          
Sbjct: 170 ---NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNH 226

Query: 914 LESLDLSMNHLSGQIPIQLANL----TFLSFLNLSHNNL 948
           + SL+L +N L G     L  L      L  + L ++ +
Sbjct: 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIV 265

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 62.8 bits (153), Expect = 4e-11
 Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 8/144 (5%)

Query: 371 IPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQ 430
           IP  H+ +    L L+ N      ++  ++ L  L  ++   N +     G+      + 
Sbjct: 26  IPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVN 84

Query: 431 QLQLAENKFGGLIPE-FSNASSSALDTIDLSGNRLEGPIPMSIFD-LRNLKILILSSNKL 488
           ++ L  N+   +  + F    S  L T+ L  NR+   +    F  L ++++L L  N++
Sbjct: 85  EILLTSNRLENVQHKMFKGLES--LKTLMLRSNRITC-VGNDSFIGLSSVRLLSLYDNQI 141

Query: 489 NGTVQLAAIQRLHNLAKLELSYNN 512
             TV   A   LH+L+ L L   N
Sbjct: 142 T-TVAPGAFDTLHSLSTLNL-LAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 38/159 (23%), Positives = 70/159 (44%), Gaps = 10/159 (6%)

Query: 456 TIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLT- 514
           T+D S  +L   IP  I   +    L L++N+          ++L  L K+  S N +T 
Sbjct: 15  TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD 71

Query: 515 VNAGSDSSFPSQVRTLRLASCKLRVIPN--LKNQSKLFNLDLSDNQISGEIPNWVWEIGN 572
           +  G+     S V  + L S +L  + +   K    L  L L  N+I+  + N  +  G 
Sbjct: 72  IEEGAFEGA-SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFI-GL 128

Query: 573 VSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQ 611
            S++ L+L  N ++++    +   L  ++ L+L +N   
Sbjct: 129 SSVRLLSLYDNQITTVAP-GAFDTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 20/111 (18%), Positives = 43/111 (38%), Gaps = 9/111 (8%)

Query: 697 VLNLRGNSLSG-TLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRD 755
            L L  N  +    +  F     L  ++ + N++      +      +  + L +N++  
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE- 94

Query: 756 TFPWWL-ENISSLRVLVLRSNSFYGNISCRENG--DSWPKLQIVDLASNNF 803
                + + + SL+ L+LRSN     I+C  N        ++++ L  N  
Sbjct: 95  NVQHKMFKGLESLKTLMLRSN----RITCVGNDSFIGLSSVRLLSLYDNQI 141

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 40/187 (21%), Positives = 69/187 (36%), Gaps = 9/187 (4%)

Query: 618 PPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSK 677
           P     +  +NN FT      I   +      + SNN IT +       A  +  + L+ 
Sbjct: 31  PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90

Query: 678 NKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSL 737
           N+L          +   L  L LR N ++   + +F G   +  L L  NQ+    P + 
Sbjct: 91  NRLENVQHKMFKGLES-LKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF 149

Query: 738 ANCRNLVVLDLGNNKIRDTFPWWLE-NISSLRVLVLRSNSFYGNISCRENGDSWPKLQIV 796
               +L  L+L  N      P+     ++ L   + +     GN  C +      ++ I 
Sbjct: 150 DTLHSLSTLNLLAN------PFNCNCYLAWLGEWLRKKRIVTGNPRC-QKPYFLKEIPIQ 202

Query: 797 DLASNNF 803
           D+A  +F
Sbjct: 203 DVAIQDF 209

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 29/129 (22%), Positives = 51/129 (39%), Gaps = 7/129 (5%)

Query: 214 QVLSLSSCYLSG-PIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLN 272
             L L++   +         KL  L  I    N +             +  + L+ +RL 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 273 GTFPEKILQ-VHTLETLDLSGNSLLQGSLPD--FPKNSSLRTLMLSNTNFSGVLPDSIGN 329
                K+ + + +L+TL L  N +    + +  F   SS+R L L +   + V P +   
Sbjct: 95  -NVQHKMFKGLESLKTLMLRSNRI--TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151

Query: 330 LKNLSRLDL 338
           L +LS L+L
Sbjct: 152 LHSLSTLNL 160

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 27/160 (16%), Positives = 49/160 (30%), Gaps = 35/160 (21%)

Query: 284 TLETLDLSGNSLLQGSLPD-FPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLA--- 339
               L L+ N          F K   LR +  SN   + +   +      ++ + L    
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92

Query: 340 LCYFDGSIPTSL-ANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTD 398
           L     ++   +   L  L  L L  N+             +T +         +     
Sbjct: 93  L----ENVQHKMFKGLESLKTLMLRSNR-------------ITCVG------NDSFI--- 126

Query: 399 WEHLSNLVYVDLRYNSLNGSIPGSLF-SLPMLQQLQLAEN 437
              LS++  + L  N +  ++    F +L  L  L L  N
Sbjct: 127 --GLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 39/185 (21%), Positives = 59/185 (31%), Gaps = 36/185 (19%)

Query: 65  CTWSGVDCDEAGRVIGLDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLG 124
           C  + VDC          L+   I   I         +Y   L L  N F   E      
Sbjct: 11  CEGTTVDCS------NQKLN--KIPEHIP--------QYTAELRLNNNEFTVLEATGIFK 54

Query: 125 SLTNLTNLNLSNAGFAGQIPIQV-SGMTRLVTLDLSSLNRFGA-PLKLENPNLSGLLQNL 182
            L  L  +N SN      I      G + +  + L+S NR               + + L
Sbjct: 55  KLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTS-NRLENVQ--------HKMFKGL 104

Query: 183 AELRELYLDGANISA--PGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVI 240
             L+ L L    I+          +   L   +++LSL    ++     +   L SLS +
Sbjct: 105 ESLKTLMLRSNRITCVGND-----SFIGL-SSVRLLSLYDNQITTVAPGAFDTLHSLSTL 158

Query: 241 RLDQN 245
            L  N
Sbjct: 159 NLLAN 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 58.9 bits (143), Expect = 6e-10
 Identities = 28/156 (17%), Positives = 61/156 (39%), Gaps = 15/156 (9%)

Query: 458 DLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNA 517
                 +E  +  ++  L+  K L LS+N +    +++++  + NL  L L  N +    
Sbjct: 31  HGMIPPIEK-MDATLSTLKACKHLALSTNNI---EKISSLSGMENLRILSLGRNLIKKIE 86

Query: 518 GSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQY 577
             D+   + +  L ++  ++  +  ++    L  L +S+N+I+              L+ 
Sbjct: 87  NLDAVADT-LEELWISYNQIASLSGIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLED 144

Query: 578 LNLSHNLLSSLQ---------RPFSISDLSPITVLD 604
           L L+ N L +           R   +  L  +  LD
Sbjct: 145 LLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 55.8 bits (135), Expect = 7e-09
 Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 7/107 (6%)

Query: 505 KLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIP 564
           +L      +     + S+  +  + L L++  +  I +L     L  L L  N I  +I 
Sbjct: 29  ELHGMIPPIEKMDATLSTLKA-CKHLALSTNNIEKISSLSGMENLRILSLGRNLIK-KIE 86

Query: 565 NWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQ 611
           N   +    +L+ L +S+N ++SL     I  L  + VL + +N++ 
Sbjct: 87  NL--DAVADTLEELWISYNQIASLS---GIEKLVNLRVLYMSNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 38/190 (20%), Positives = 65/190 (34%), Gaps = 39/190 (20%)

Query: 356 QLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTD-WEHLSNLVYVDLRYNS 414
           + V L            +L   K   HL LS N     I        + NL  + L  N 
Sbjct: 26  EKVELHGMIPPIEKMDATLSTLKACKHLALSTNN----IEKISSLSGMENLRILSLGRNL 81

Query: 415 LNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFD 474
           +   I         L++L ++ N+                         L G     I  
Sbjct: 82  IK-KIENLDAVADTLEELWISYNQI----------------------ASLSG-----IEK 113

Query: 475 LRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLAS 534
           L NL++L +S+NK+    ++  +  L  L  L L+ N L  +   +++       +    
Sbjct: 114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV---- 169

Query: 535 CKLRVIPNLK 544
             ++ +PNLK
Sbjct: 170 --VKRLPNLK 177

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 52.8 bits (127), Expect = 7e-08
 Identities = 35/162 (21%), Positives = 55/162 (33%), Gaps = 26/162 (16%)

Query: 650 SLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEI-----LGVLNLRGNS 704
                 I   +  TL   K    L LS N +         K+S +     L +L+L  N 
Sbjct: 31  HGMIPPIEK-MDATLSTLKACKHLALSTNNIE--------KISSLSGMENLRILSLGRNL 81

Query: 705 LSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFP-WWLEN 763
           +   +         L  L ++ NQ+       +    NL VL + NNKI +      L  
Sbjct: 82  IK-KIENLDAVADTLEELWISYNQI--ASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAA 138

Query: 764 ISSLRVLVLRSNSFYGNISCRENGDSW--------PKLQIVD 797
           +  L  L+L  N  Y +         +        P L+ +D
Sbjct: 139 LDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 33/146 (22%), Positives = 53/146 (36%), Gaps = 24/146 (16%)

Query: 104 LQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIP-IQ-VSGMTRLVTLDLSSL 161
            + + L   +    ++ + L +L    +L LS       I  I  +SGM  L  L L   
Sbjct: 25  AEKVELHGMIPPIEKMDATLSTLKACKHLALST----NNIEKISSLSGMENLRILSLGR- 79

Query: 162 NRFGAPLKLENPNLSGLLQNLAELRELYLDGANISA-PGIEWCQALSSLVPKLQVLSLSS 220
           N            +  L      L EL++    I++  GIE           L+VL +S+
Sbjct: 80  NLI--------KKIENLDAVADTLEELWISYNQIASLSGIEKL-------VNLRVLYMSN 124

Query: 221 CYLSGPIH-PSLAKLQSLSVIRLDQN 245
             ++       LA L  L  + L  N
Sbjct: 125 NKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 36/152 (23%), Positives = 56/152 (36%), Gaps = 28/152 (18%)

Query: 227 IHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKI----LQV 282
           +  +L+ L++   + L  N++       L+   NL  L L  + +     +KI       
Sbjct: 40  MDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLI-----KKIENLDAVA 92

Query: 283 HTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSN---TNFSGVLPDSIGNLKNLSRLDL- 338
            TLE L +S N +   SL    K  +LR L +SN   TN+  +  D +  L  L  L L 
Sbjct: 93  DTLEELWISYNQI--ASLSGIEKLVNLRVLYMSNNKITNWGEI--DKLAALDKLEDLLLA 148

Query: 339 ---------ALCYFDGSIPTSLANLTQLVYLD 361
                                +  L  L  LD
Sbjct: 149 GNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 61.0 bits (148), Expect = 6e-10
 Identities = 48/243 (19%), Positives = 103/243 (42%), Gaps = 17/243 (6%)

Query: 96  SPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVT 155
           +  FS   +Q ++L+ ++   + +   L   + L NL+L     +  I   ++  + LV 
Sbjct: 87  AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR 146

Query: 156 LDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDG-ANISAPGIEWCQALSSLVPKLQ 214
           L+LS  +            L  LL + + L EL L    + +   ++   A++ +   + 
Sbjct: 147 LNLSGCS------GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ--VAVAHVSETIT 198

Query: 215 VLSLSSCYLS---GPIHPSLAKLQSLSVIRLDQNDLLSPVP-EFLADFFNLTSLRLSH-S 269
            L+LS    +     +   + +  +L  + L  + +L     +       L  L LS   
Sbjct: 199 QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258

Query: 270 RLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGN 329
            +      ++ ++ TL+TL + G  +  G+L    +  +L  L ++ ++F+ +   +IGN
Sbjct: 259 DIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKE--ALPHLQINCSHFTTIARPTIGN 315

Query: 330 LKN 332
            KN
Sbjct: 316 KKN 318

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 55.3 bits (133), Expect = 4e-08
 Identities = 48/243 (19%), Positives = 79/243 (32%), Gaps = 18/243 (7%)

Query: 201 EWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFN 260
           +    L S          S        H S  ++Q + +         S +   L+    
Sbjct: 62  DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV--STLHGILSQCSK 119

Query: 261 LTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQ-GSLPDFPKN-SSLRTLMLSNTN 318
           L +L L   RL+      + +   L  L+LSG S     +L     + S L  L LS   
Sbjct: 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF 179

Query: 319 F---SGVLPDSIGNLKNLSRLDLALCYF---DGSIPTSLANLTQLVYLDLSFNKFVGP-- 370
                 V        + +++L+L+          + T +     LV+LDLS +  +    
Sbjct: 180 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC 239

Query: 371 IPSLHMSKNLTHLDLSYNALPGAISSTDWEHLS---NLVYVDLRYNSLNGSIPGSLFSLP 427
                    L HL LS       I       L     L  + +     +G++     +LP
Sbjct: 240 FQEFFQLNYLQHLSLSRCYD---IIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALP 296

Query: 428 MLQ 430
            LQ
Sbjct: 297 HLQ 299

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 45/280 (16%), Positives = 85/280 (30%), Gaps = 57/280 (20%)

Query: 673 LDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSV-TFPGNCGLHTLDLNGNQLG- 730
           LDL+   L   +   L+      GV+  R         +        +  +DL+ + +  
Sbjct: 52  LDLTGKNLHPDVTGRLLS----QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV 107

Query: 731 GTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSW 790
            T+   L+ C  L  L L   ++ D     L   S+L  L L   S +   + +    S 
Sbjct: 108 STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 167

Query: 791 PKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTV 850
            +L  ++L+           C                                       
Sbjct: 168 SRLDELNLSW----------C------------------------------------FDF 181

Query: 851 TSKGLEMELVKILSIFTSIDFSRNNF---DGPIPEEIGRLKSLHGLNLSQ-NALTGPIPS 906
           T K +++ +  +    T ++ S          +   + R  +L  L+LS    L      
Sbjct: 182 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 241

Query: 907 AIGNLQQLESLDLSM-NHLSGQIPIQLANLTFLSFLNLSH 945
               L  L+ L LS    +  +  ++L  +  L  L +  
Sbjct: 242 EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 42.9 bits (101), Expect = 4e-04
 Identities = 34/178 (19%), Positives = 53/178 (29%), Gaps = 34/178 (19%)

Query: 292 GNSLLQGSLPDFPKNSSLRTLMLSNTNFS-GVLPDSIGNLKNLSRLDLALCYFDGSIPTS 350
             S +   L +      ++ + LSN+      L   +     L  L L        I  +
Sbjct: 78  PRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT 137

Query: 351 LANLTQLVYLDLSFNKFVGPIPSLHMS---KNLTHLDLSY------NALPGAISS----- 396
           LA  + LV L+LS            +      L  L+LS+        +  A++      
Sbjct: 138 LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197

Query: 397 ------------TD------WEHLSNLVYVDLRY-NSLNGSIPGSLFSLPMLQQLQLA 435
                                    NLV++DL     L        F L  LQ L L+
Sbjct: 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLS 255

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 59.7 bits (145), Expect = 7e-10
 Identities = 45/136 (33%), Positives = 67/136 (49%), Gaps = 7/136 (5%)

Query: 381 THLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLF-SLPMLQQLQLAENKF 439
             LDL    L   +S   +  L+ L +++L YN L  ++   +F  L  L  L LA N+ 
Sbjct: 38  EKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQL 95

Query: 440 GGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFD-LRNLKILILSSNKLNGTVQLAAIQ 498
             L P       + LD + L GN+L+  +P  +FD L  LK L L++N+L  ++   A  
Sbjct: 96  ASL-PLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFD 152

Query: 499 RLHNLAKLELSYNNLT 514
           +L NL  L LS N L 
Sbjct: 153 KLTNLQTLSLSTNQLQ 168

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 41/158 (25%), Positives = 61/158 (38%), Gaps = 28/158 (17%)

Query: 455 DTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLT 514
           + +DL    L      +   L  L  L L  N+L  T+       L  L  L L+ N L 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQLA 96

Query: 515 VNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVS 574
                  S P  V                 + ++L  L L  NQ+   +P+ V++     
Sbjct: 97  -------SLPLGV---------------FDHLTQLDKLYLGGNQLK-SLPSGVFD-RLTK 132

Query: 575 LQYLNLSHNLLSSLQRPFSISD-LSPITVLDLHSNQLQ 611
           L+ L L+ N L S+  P    D L+ +  L L +NQLQ
Sbjct: 133 LKELRLNTNQLQSI--PAGAFDKLTNLQTLSLSTNQLQ 168

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 44/162 (27%), Positives = 58/162 (35%), Gaps = 20/162 (12%)

Query: 286 ETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLA---LCY 342
           E LDL    L   S   F   + L  L L       +      +L  L  L LA   L  
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 343 FDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSK--NLTHLDLSYN---ALP-GAISS 396
               +   L  L     L L  N+    +PS    +   L  L L+ N   ++P GA   
Sbjct: 98  LPLGVFDHLTQLD---KLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK 153

Query: 397 TDWEHLSNLVYVDLRYNSLNGSIPGSLF-SLPMLQQLQLAEN 437
                L+NL  + L  N L  S+P   F  L  LQ + L  N
Sbjct: 154 -----LTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)

Query: 524 PSQVRTLRLASCKLRVIPN--LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLS 581
           P+    L L S  L  + +   +  +KL  L+L  NQ+   +   V++     L  L L+
Sbjct: 34  PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFD-DLTELGTLGLA 91

Query: 582 HNLLSSLQRPFSISD-LSPITVLDLHSNQLQ 611
           +N L+SL  P  + D L+ +  L L  NQL+
Sbjct: 92  NNQLASL--PLGVFDHLTQLDKLYLGGNQLK 120

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 51/165 (30%), Positives = 78/165 (47%), Gaps = 14/165 (8%)

Query: 353 NLTQLVYLDLSFN--KFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDL 410
            L  +  +  + +  K V  I  L    N+ +L L  N L   IS+     L+NL Y+ L
Sbjct: 39  ELNSIDQIIANNSDIKSVQGIQYL---PNVRYLALGGNKLH-DISALK--ELTNLTYLIL 92

Query: 411 RYNSLNGSIPGSLF-SLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIP 469
             N L  S+P  +F  L  L++L L EN+   L P+      + L  ++L+ N+L+  +P
Sbjct: 93  TGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSL-PDGVFDKLTNLTYLNLAHNQLQS-LP 149

Query: 470 MSIFD-LRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNL 513
             +FD L NL  L LS N+L  ++      +L  L  L L  N L
Sbjct: 150 KGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 50/208 (24%), Positives = 93/208 (44%), Gaps = 20/208 (9%)

Query: 408 VDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGP 467
           + +         P   F+     +  L +          +  +S  +D I  + + ++  
Sbjct: 3   ITVSTPIKQ-IFPDDAFA--ETIKANLKKKSVTDA-VTQNELNS--IDQIIANNSDIKSV 56

Query: 468 IPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLT-VNAGSDSSFPSQ 526
               I  L N++ L L  NKL+    ++A++ L NL  L L+ N L  +  G      + 
Sbjct: 57  QG--IQYLPNVRYLALGGNKLH---DISALKELTNLTYLILTGNQLQSLPNGVFDK-LTN 110

Query: 527 VRTLRLASCKLRVIPN--LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNL 584
           ++ L L   +L+ +P+      + L  L+L+ NQ+   +P  V++    +L  L+LS+N 
Sbjct: 111 LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFD-KLTNLTELDLSYNQ 168

Query: 585 LSSLQRPFSISD-LSPITVLDLHSNQLQ 611
           L SL  P  + D L+ +  L L+ NQL+
Sbjct: 169 LQSL--PEGVFDKLTQLKDLRLYQNQLK 194

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 51/216 (23%), Positives = 85/216 (39%), Gaps = 34/216 (15%)

Query: 236 SLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSL 295
                 L +  +         +  ++  +  ++S +     + I  +  +  L L GN L
Sbjct: 20  ETIKANLKKKSVTD-AVTQN-ELNSIDQIIANNSDI--KSVQGIQYLPNVRYLALGGNKL 75

Query: 296 LQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSL---- 351
               +    + ++L  L+L+      +       L NL  L L       +   SL    
Sbjct: 76  --HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL-----VENQLQSLPDGV 128

Query: 352 -ANLTQLVYLDLSFNKFVGPIPSL-----HMSKNLTHLDLSYN---ALPGAISSTDWEHL 402
              LT L YL+L+ N+    + SL         NLT LDLSYN   +LP  +    ++ L
Sbjct: 129 FDKLTNLTYLNLAHNQ----LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV----FDKL 180

Query: 403 SNLVYVDLRYNSLNGSIPGSLF-SLPMLQQLQLAEN 437
           + L  + L  N L  S+P  +F  L  LQ + L +N
Sbjct: 181 TQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 215

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 41/129 (31%), Positives = 74/129 (57%), Gaps = 8/129 (6%)

Query: 409 DLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPE-FSNASSSALDTIDLSGNRLEGP 467
            L  N++    PG+      L+++ L+ N+   L P+ F    S  L+++ L GN++   
Sbjct: 38  RLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS--LNSLVLYGNKITE- 94

Query: 468 IPMSIFD-LRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNL-TVNAGSDSSFPS 525
           +P S+F+ L +L++L+L++NK+N  +++ A Q LHNL  L L  N L T+  G+ S   +
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153

Query: 526 QVRTLRLAS 534
            ++T+ LA 
Sbjct: 154 -IQTMHLAQ 161

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 56.6 bits (137), Expect = 6e-09
 Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 5/117 (4%)

Query: 348 PTSLANLTQLVYLDLSFNKFVG-PIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLV 406
           P + +   +L  +DLS N+       +    ++L  L L  N +   +  + +E L +L 
Sbjct: 49  PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI-TELPKSLFEGLFSLQ 107

Query: 407 YVDLRYNSLNGSIPGSLF-SLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGN 462
            + L  N +N  +    F  L  L  L L +NK    I + + +   A+ T+ L+ N
Sbjct: 108 LLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.5 bits (129), Expect = 7e-08
 Identities = 34/160 (21%), Positives = 63/160 (39%), Gaps = 27/160 (16%)

Query: 521 SSFPSQVRTLRLASCKLRVIPN--LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYL 578
           ++ P  +  +RL    ++VIP        KL  +DLS+NQIS E+    ++ G  SL  L
Sbjct: 28  TNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQ-GLRSLNSL 85

Query: 579 NLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDD 638
            L  N ++ L        L  + +L L++N++                        +  D
Sbjct: 86  VLYGNKITELP-KSLFEGLFSLQLLLLNANKIN----------------------CLRVD 122

Query: 639 IGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKN 678
               +      SL +N +  +   T    + +  + L++N
Sbjct: 123 AFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 37/157 (23%), Positives = 61/157 (38%), Gaps = 11/157 (7%)

Query: 624 VDYSNNSFTS---SIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKL 680
           VD      T    ++P+             L  N+I  + P      K L  +DLS N++
Sbjct: 16  VDCRGKGLTEIPTNLPET-------ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI 68

Query: 681 SGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANC 740
           S   P     +   L  L L GN ++      F G   L  L LN N++      +  + 
Sbjct: 69  SELAPDAFQGLRS-LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDL 127

Query: 741 RNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSF 777
            NL +L L +NK++         + +++ + L  N F
Sbjct: 128 HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 33/141 (23%), Positives = 51/141 (36%), Gaps = 20/141 (14%)

Query: 307 SSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPT-SLANLTQLVYLDLSFN 365
            ++  + L       + P +    K L R+DL+       +   +   L  L  L L  N
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGN 90

Query: 366 KFVGPIPSLHMS-----KNLTHLDLSYNAL----PGAISSTDWEHLSNLVYVDLRYNSLN 416
           K    I  L  S      +L  L L+ N +      A      + L NL  + L  N L 
Sbjct: 91  K----ITELPKSLFEGLFSLQLLLLNANKINCLRVDAF-----QDLHNLNLLSLYDNKLQ 141

Query: 417 GSIPGSLFSLPMLQQLQLAEN 437
               G+   L  +Q + LA+N
Sbjct: 142 TIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 32/146 (21%), Positives = 52/146 (35%), Gaps = 23/146 (15%)

Query: 105 QSLNLAFNMFNATEIPSG-LGSLTNLTNLNLSNAGFAGQIPIQV-SGMTRLVTLDLSSLN 162
             + L  N      IP G       L  ++LSN   + ++      G+  L +L L   N
Sbjct: 35  TEIRLEQNTI--KVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYG-N 90

Query: 163 RFGA-PLKLENPNLSGLLQNLAELRELYLDGANISA--PGIEWCQALSSLVPKLQVLSLS 219
           +    P          L + L  L+ L L+   I+          A   L   L +LSL 
Sbjct: 91  KITELP--------KSLFEGLFSLQLLLLNANKINCLRVD-----AFQDL-HNLNLLSLY 136

Query: 220 SCYLSGPIHPSLAKLQSLSVIRLDQN 245
              L      + + L+++  + L QN
Sbjct: 137 DNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 30/187 (16%), Positives = 56/187 (29%), Gaps = 54/187 (28%)

Query: 573 VSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFT 632
            ++  + L  N +  +  P + S    +  +DL +NQ+                      
Sbjct: 32  ETITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQIS--------------------- 69

Query: 633 SSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMS 692
             +  D         F  L +                L  L L  NK++    +    + 
Sbjct: 70  -ELAPDA--------FQGLRS----------------LNSLVLYGNKITELPKSLFEGLF 104

Query: 693 EILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNK 752
             L +L L  N ++      F     L+ L L  N+L      + +  R +  + L  N 
Sbjct: 105 S-LQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN- 162

Query: 753 IRDTFPW 759
                P+
Sbjct: 163 -----PF 164

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.9 bits (144), Expect = 4e-09
 Identities = 88/522 (16%), Positives = 147/522 (28%), Gaps = 181/522 (34%)

Query: 2   SVLQLSWLFLLTMLTNFGG----INMVLVSGQCQSDQQSLLLQMKSSLVFNSSLSFRMVQ 57
           + + L       +          +N+      C S + ++L  ++        L +++  
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNL----KNCNSPE-TVLEMLQK-------LLYQIDP 211

Query: 58  -WSQSNDCCTWSGVDCDEAGRVIGLDLSEESISAGIDNSSPLFSLK-YLQSLNLAFNMFN 115
            W+  +D                 + L   SI A +     L   K Y   L L      
Sbjct: 212 NWTSRSD-------------HSSNIKLRIHSIQAELRR---LLKSKPYENCL-L------ 248

Query: 116 ATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTR--LVTLDLSSLNRFGAPLKLENP 173
              +      L N+ N    NA F     I ++  TR   VT  LS+       L   + 
Sbjct: 249 ---V------LLNVQNAKAWNA-FNLSCKILLT--TRFKQVTDFLSAATTTHISLDHHSM 296

Query: 174 NLSGLLQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPS--- 230
            L+       E++ L L   +         Q L   V       LS    S     +   
Sbjct: 297 TLT-----PDEVKSLLLKYLDCR------PQDLPREVLTTNPRRLSIIAESIRDGLATWD 345

Query: 231 ---------LAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPE--KI 279
                    L  +   S+      ++L P  E+   F  L             FP    I
Sbjct: 346 NWKHVNCDKLTTIIESSL------NVLEP-AEYRKMFDRL-----------SVFPPSAHI 387

Query: 280 LQVHTLETL--------------DLSGNSLLQG-------SLPDF-----PKNSSLRTL- 312
                L  +               L   SL++        S+P        K  +   L 
Sbjct: 388 -PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446

Query: 313 --MLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSI------------PTSLANLTQLV 358
             ++ + N            K     DL   Y D                     L ++V
Sbjct: 447 RSIVDHYNI----------PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496

Query: 359 YLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLV----YV---DLR 411
           +LD  F           + + + H   ++NA  G+I +T    L  L     Y+   D +
Sbjct: 497 FLDFRF-----------LEQKIRHDSTAWNA-SGSILNT----LQQLKFYKPYICDNDPK 540

Query: 412 YNSLNGSI----PG---SLFSLPMLQQLQLA-ENKFGGLIPE 445
           Y  L  +I    P    +L        L++A   +   +  E
Sbjct: 541 YERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.5 bits (143), Expect = 5e-09
 Identities = 95/630 (15%), Positives = 181/630 (28%), Gaps = 193/630 (30%)

Query: 443 IPEFSNA--SSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNK------LNGTVQ- 493
           + +   +  S   +D I +S + + G           L   +LS  +      +   ++ 
Sbjct: 38  VQDMPKSILSKEEIDHIIMSKDAVSG--------TLRLFWTLLSKQEEMVQKFVEEVLRI 89

Query: 494 -----LAAIQRLHNLAKLE----LSYNNLTVNAGSDSSF-------PSQVRTLRLASCKL 537
                ++ I+       +     +   +   N   +  F             LR A  +L
Sbjct: 90  NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN--DNQVFAKYNVSRLQPYLKLRQALLEL 147

Query: 538 RVIPNL---------KNQSKLFNLDLSDNQISGEIPNWV-WEIGNVSLQYLNLSHNLLSS 587
           R   N+         K  + +        ++  ++   + W    ++L+  N    +L  
Sbjct: 148 RPAKNVLIDGVLGSGK--TWVALDVCLSYKVQCKMDFKIFW----LNLKNCNSPETVLEM 201

Query: 588 LQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTL 647
           LQ+     D                     P      D+S+N     I   I        
Sbjct: 202 LQKLLYQID---------------------PNWTSRSDHSSN-----IKLRI-------- 227

Query: 648 FFSLSNNSITGVIPETLCRAKY---LLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNS 704
                 +SI   +   L    Y   LLVL    N          ++ ++     NL    
Sbjct: 228 ------HSIQAELRRLLKSKPYENCLLVLL---N----------VQNAKAWNAFNLSCKI 268

Query: 705 LSGT--LSVT-FPGNCGLHTLDLNGNQLGGTVPKS---LANCRNLVVLDLGNNKIRDTFP 758
           L  T    VT F        + L+ + +  T  +    L    +    DL   ++  T P
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-PREVLTTNP 327

Query: 759 WWLENIS-SLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKC------ 811
             L  I+ S+R  +   +  + +++C           I++ + N       +K       
Sbjct: 328 RRLSIIAESIRDGLATWD-NWKHVNC------DKLTTIIESSLNVLEPAEYRKMFDRLSV 380

Query: 812 ------ITS------WKAMMSDEDE-----------AQSNFK-------DVHFEFLKIAD 841
                 I +      W  ++  +              +   K        ++ E     +
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440

Query: 842 FYYQDAVTVTSKGLEMELV---KILSIFTSIDFSRNNFDGPIPEEIGR-LKSL-HG---- 892
             Y          L   +V    I   F S D      D      IG  LK++ H     
Sbjct: 441 NEYA---------LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491

Query: 893 ------LNLS--QNAL--TGPIPSAIGNLQQ-LESLDLSMNHLSGQIPI--QLANLTFLS 939
                 L+    +  +       +A G++   L+ L     ++    P   +L N   L 
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN-AILD 550

Query: 940 FLNLSHNNLVGKIPISTQLQSFLATSFEGN 969
           FL     NL+     +  L+  +A   E  
Sbjct: 551 FLPKIEENLI-CSKYTDLLR--IALMAEDE 577

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 8e-07
 Identities = 72/459 (15%), Positives = 136/459 (29%), Gaps = 146/459 (31%)

Query: 568 WEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYS 627
           +E G    QY     ++LS  +  F + +     V D+             PK++L    
Sbjct: 9   FETGEHQYQY----KDILSVFEDAF-VDNFDCKDVQDM-------------PKSIL---- 46

Query: 628 NNSFTSSIPDDI---GNFVSFT--LFFSL--SNNSITGVIPETLCRAKYLLVLD------ 674
               +    D I    + VS T  LF++L      +     E + R  Y  ++       
Sbjct: 47  ----SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102

Query: 675 -----------LSKNKLSG------KMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNC 717
                        +++L        K     ++       L LR  +L   L +    N 
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP-----YLKLR-QAL---LELRPAKNV 153

Query: 718 GLHTLDLNGNQLGGTVPKS-LAN--CRNLVVLDLGNNKIRDTFPWWLE--NISSLRVLVL 772
            +      G  + G+  K+ +A   C +  V    + KI   F  WL   N +S   ++ 
Sbjct: 154 LID-----G--VLGS-GKTWVALDVCLSYKVQCKMDFKI---F--WLNLKNCNSPETVLE 200

Query: 773 RSNSFYGNISC----RENGDSWPKLQIVDLA---SNNFGGRVPQKCI---------TSWK 816
                   I      R +  S  KL+I  +          +  + C+          +W 
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260

Query: 817 AMMSDEDEAQSNFKDVHFEFL------KIADF-----YYQDAVTVTSKGL-EMELVKILS 864
           A             ++  + L      ++ DF         ++   S  L   E+  +L 
Sbjct: 261 AF------------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308

Query: 865 IFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQ-NALTGPIPSAIGNLQQL------ESL 917
            +             +P E+    + +   LS          +   N + +        +
Sbjct: 309 KYLDCRPQD------LPREV---LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 918 DLSMNHLSGQIPIQLANLTFLSFLNLSHNNLVGKIPIST 956
           + S+N L    P +   + F        +     IP   
Sbjct: 360 ESSLNVLE---PAEYRKM-FDRLSVFPPS--A-HIPTIL 391

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 55.8 bits (135), Expect = 5e-09
 Identities = 23/129 (17%), Positives = 51/129 (39%), Gaps = 6/129 (4%)

Query: 480 ILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRV 539
           ++ L++  +    Q A         +L+L    + V     ++   Q   +  +  ++R 
Sbjct: 1   MVKLTAELIE---QAAQYTNAVRDRELDLRGYKIPVIENLGATLD-QFDAIDFSDNEIRK 56

Query: 540 IPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSP 599
           +       +L  L +++N+I   I   + +     L  L L++N L  L     ++ L  
Sbjct: 57  LDGFPLLRRLKTLLVNNNRIC-RIGEGLDQ-ALPDLTELILTNNSLVELGDLDPLASLKS 114

Query: 600 ITVLDLHSN 608
           +T L +  N
Sbjct: 115 LTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 27/144 (18%), Positives = 47/144 (32%), Gaps = 26/144 (18%)

Query: 255 LADFFNLTSLRLSHSRLNGTFPEKI----LQVHTLETLDLSGNSLLQGSLPDFPKNSSLR 310
             +      L L   ++       I      +   + +D S N +    L  FP    L+
Sbjct: 15  YTNAVRDRELDLRGYKI-----PVIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLK 67

Query: 311 TLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDG-SIPTSLANLTQLVYLDLSFN---- 365
           TL+++N     +       L +L+ L L             LA+L  L YL +  N    
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN 127

Query: 366 -----KFVGPIPSLHMSKNLTHLD 384
                 +V     ++    +  LD
Sbjct: 128 KKHYRLYV-----IYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 27/138 (19%), Positives = 43/138 (31%), Gaps = 12/138 (8%)

Query: 651 LSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLS 710
           L+   I          A     LDL   K+   +   L    +    ++   N +   L 
Sbjct: 4   LTAELIEQA--AQYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEIR-KLD 58

Query: 711 VTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVL 770
             FP    L TL +N N++            +L  L L NN + +     L ++  L  L
Sbjct: 59  -GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-----LGDLDPLASL 112

Query: 771 V-LRSNSFYGNISCRENG 787
             L       N    +  
Sbjct: 113 KSLTYLCILRNPVTNKKH 130

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 6/116 (5%)

Query: 400 EHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASS-SALDTID 458
            +      +DLR   +   I     +L     +  ++N+    I +         L T+ 
Sbjct: 16  TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNE----IRKLDGFPLLRRLKTLL 70

Query: 459 LSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLT 514
           ++ NR+          L +L  LIL++N L     L  +  L +L  L +  N +T
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.2 bits (110), Expect = 9e-06
 Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 9/121 (7%)

Query: 443 IPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHN 502
             +++NA       +DL G ++     +    L     +  S N++    +L     L  
Sbjct: 12  AAQYTNAVR--DRELDLRGYKIPVIENLGA-TLDQFDAIDFSDNEIR---KLDGFPLLRR 65

Query: 503 LAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCK---LRVIPNLKNQSKLFNLDLSDNQI 559
           L  L ++ N +             +  L L +     L  +  L +   L  L +  N +
Sbjct: 66  LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125

Query: 560 S 560
           +
Sbjct: 126 T 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 7/91 (7%)

Query: 859 LVKILSIFTSIDFSRNNFDGPIP--EEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLES 916
           L   L  F +IDFS N     I   +    L+ L  L ++ N +          L  L  
Sbjct: 37  LGATLDQFDAIDFSDNE----IRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92

Query: 917 LDLSMNHLSGQIPIQ-LANLTFLSFLNLSHN 946
           L L+ N L     +  LA+L  L++L +  N
Sbjct: 93  LILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 33/191 (17%), Positives = 55/191 (28%), Gaps = 57/191 (29%)

Query: 179 LQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLS 238
             N    REL L G  I    IE    L + + +   +  S   +       L     L 
Sbjct: 15  YTNAVRDRELDLRGYKIPV--IEN---LGATLDQFDAIDFSDNEIR-----KLDGFPLLR 64

Query: 239 VIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQG 298
                                 L +L ++++R+          +  L  L L+ NSL   
Sbjct: 65  ---------------------RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL--- 100

Query: 299 SLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLA---LCYFDGSIPTSLANLT 355
                     L  L            D + +LK+L+ L +    +          +  + 
Sbjct: 101 --------VELGDL------------DPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVP 140

Query: 356 QLVYLDLSFNK 366
           Q+  LD    K
Sbjct: 141 QVRVLDFQKVK 151

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 55.1 bits (133), Expect = 8e-09
 Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 4/132 (3%)

Query: 485 SNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLK 544
             +++  ++      +  L  L+   +N     G  + F   +  L L +  L  + NL 
Sbjct: 11  KRRIHLELRNRTPAAVREL-VLDNCKSNDGKIEGLTAEFV-NLEFLSLINVGLISVSNLP 68

Query: 545 NQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLD 604
              KL  L+LS+N+I G   + + E    +L +LNLS N L  +     +  L  +  LD
Sbjct: 69  KLPKLKKLELSENRIFG-GLDMLAE-KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLD 126

Query: 605 LHSNQLQGNIPY 616
           L + ++     Y
Sbjct: 127 LFNCEVTNLNDY 138

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 36/139 (25%), Positives = 50/139 (35%), Gaps = 18/139 (12%)

Query: 257 DFFNLTSLRLSHSRLNGTFPEKILQVHT-LETLDLSGNSLLQGSLPDFPKNSSLRTLMLS 315
               +  L L + + N    E +      LE L L    L+  S+ + PK   L+ L LS
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI--SVSNLPKLPKLKKLELS 79

Query: 316 NTNFSGVLPDSIGNLKNLSRLDLALCYF-DGSIPTSLANLTQLVYLDLSFN--------- 365
                G L      L NL+ L+L+     D S    L  L  L  LDL            
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYR 139

Query: 366 KFVGPIPSLHMSKNLTHLD 384
           + V       +   LT+LD
Sbjct: 140 ESV-----FKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 5/106 (4%)

Query: 671 LVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLG 730
           LVLD  K+   GK+     +    L  L+L    L  ++S   P    L  L+L+ N++ 
Sbjct: 29  LVLDNCKSND-GKIEGLTAEFVN-LEFLSLINVGLI-SVSN-LPKLPKLKKLELSENRIF 84

Query: 731 GTVPKSLANCRNLVVLDLGNNKIRDTFPWW-LENISSLRVLVLRSN 775
           G +        NL  L+L  NK++D      L+ +  L+ L L + 
Sbjct: 85  GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 29/111 (26%), Positives = 41/111 (36%), Gaps = 4/111 (3%)

Query: 329 NLKNLSRLDLALCYFD-GSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSY 387
               +  L L  C  + G I    A    L +L L     +  + +L     L  L+LS 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-VSNLPKLPKLKKLELSE 80

Query: 388 NALPGAISSTDWEHLSNLVYVDLRYNSLNG-SIPGSLFSLPMLQQLQLAEN 437
           N + G       E L NL +++L  N L   S    L  L  L+ L L   
Sbjct: 81  NRIFG-GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 43/168 (25%), Positives = 63/168 (37%), Gaps = 33/168 (19%)

Query: 174 NLSGLLQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAK 233
           +L    +  A +REL LD    +   IE    L++    L+ LSL +  L      S++ 
Sbjct: 15  HLELRNRTPAAVRELVLDNCKSNDGKIE---GLTAEFVNLEFLSLINVGLI-----SVSN 66

Query: 234 LQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGN 293
           L  L                       L  L LS +R+ G       ++  L  L+LSGN
Sbjct: 67  LPKLP---------------------KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN 105

Query: 294 SL-LQGSLPDFPKNSSLRTLMLSN---TNFSGVLPDSIGNLKNLSRLD 337
            L    +L    K   L++L L N   TN +         L  L+ LD
Sbjct: 106 KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 32/118 (27%), Positives = 46/118 (38%), Gaps = 6/118 (5%)

Query: 399 WEHLSNLVYVDLRYNSLN-GSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASS-SALDT 456
               + +  + L     N G I G       L+ L L        +   SN      L  
Sbjct: 20  NRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG----LISVSNLPKLPKLKK 75

Query: 457 IDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLT 514
           ++LS NR+ G + M    L NL  L LS NKL     L  +++L  L  L+L    +T
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 873 RNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQL 932
             + DG I        +L  L+L    L     S +  L +L+ L+LS N + G + +  
Sbjct: 34  CKSNDGKIEGLTAEFVNLEFLSLINVGLI--SVSNLPKLPKLKKLELSENRIFGGLDMLA 91

Query: 933 ANLTFLSFLNLSHNNL 948
             L  L+ LNLS N L
Sbjct: 92  EKLPNLTHLNLSGNKL 107

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 882 EEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQ-LANLTFLSF 940
             + +L  L  L LS+N + G +      L  L  L+LS N L     ++ L  L  L  
Sbjct: 65  SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKS 124

Query: 941 LNLSHN 946
           L+L + 
Sbjct: 125 LDLFNC 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 37/139 (26%), Positives = 52/139 (37%), Gaps = 18/139 (12%)

Query: 257 DFFNLTSLRLSHSRLN-GTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLS 315
              ++  L L +SR N G       +   LE L      L   S+ + PK + L+ L LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--SIANLPKLNKLKKLELS 72

Query: 316 NTNFSGVLPDSIGNLKNLSRLDLALCYF-DGSIPTSLANLTQLVYLDLSFN--------- 365
           +   SG L        NL+ L+L+     D S    L  L  L  LDL            
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYR 132

Query: 366 KFVGPIPSLHMSKNLTHLD 384
           + V       +   LT+LD
Sbjct: 133 ENV-----FKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 5/113 (4%)

Query: 498 QRLHNLAKLELSYN--NLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLS 555
           +   ++ +L L  +  N     G    F  ++  L   +  L  I NL   +KL  L+LS
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFE-ELEFLSTINVGLTSIANLPKLNKLKKLELS 72

Query: 556 DNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSN 608
           DN++SG +     +  N  L +LNLS N +  L     +  L  +  LDL + 
Sbjct: 73  DNRVSGGLEVLAEKCPN--LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 5/106 (4%)

Query: 671 LVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLG 730
           LVLD S++   GK+     +  E L  L+     L+ +++   P    L  L+L+ N++ 
Sbjct: 22  LVLDNSRSNE-GKLEGLTDEFEE-LEFLSTINVGLT-SIAN-LPKLNKLKKLELSDNRVS 77

Query: 731 GTVPKSLANCRNLVVLDLGNNKIRD-TFPWWLENISSLRVLVLRSN 775
           G +      C NL  L+L  NKI+D +    L+ + +L+ L L + 
Sbjct: 78  GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 6/118 (5%)

Query: 399 WEHLSNLVYVDLRYNSLN-GSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASS-SALDT 456
               S++  + L  +  N G + G       L+ L          +   +N    + L  
Sbjct: 13  NRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG----LTSIANLPKLNKLKK 68

Query: 457 IDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLT 514
           ++LS NR+ G + +      NL  L LS NK+     +  +++L NL  L+L    +T
Sbjct: 69  LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 7/123 (5%)

Query: 442 LIPEFSNASSSALDTIDLSGNRL-EGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRL 500
           +  E  N + S +  + L  +R  EG +     +   L+ L   +  L     +A + +L
Sbjct: 7   IHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL---TSIANLPKL 63

Query: 501 HNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCK---LRVIPNLKNQSKLFNLDLSDN 557
           + L KLELS N ++      +     +  L L+  K   L  I  LK    L +LDL + 
Sbjct: 64  NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

Query: 558 QIS 560
           +++
Sbjct: 124 EVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 24/111 (21%), Positives = 38/111 (34%), Gaps = 4/111 (3%)

Query: 329 NLKNLSRLDLALCYFD-GSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSY 387
              ++  L L     + G +        +L +L          I +L     L  L+LS 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-IANLPKLNKLKKLELSD 73

Query: 388 NALPGAISSTDWEHLSNLVYVDLRYNSLNG-SIPGSLFSLPMLQQLQLAEN 437
           N + G       E   NL +++L  N +   S    L  L  L+ L L   
Sbjct: 74  NRVSG-GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 37/162 (22%), Positives = 66/162 (40%), Gaps = 33/162 (20%)

Query: 180 QNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSV 239
           +  ++++EL LD +  +   +E    L+    +L+ LS  +  L+     S+A L  L+ 
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLE---GLTDEFEELEFLSTINVGLT-----SIANLPKLN- 64

Query: 240 IRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSL-LQG 298
                                L  L LS +R++G       +   L  L+LSGN +    
Sbjct: 65  --------------------KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLS 104

Query: 299 SLPDFPKNSSLRTLMLSN---TNFSGVLPDSIGNLKNLSRLD 337
           ++    K  +L++L L N   TN +    +    L  L+ LD
Sbjct: 105 TIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 3/81 (3%)

Query: 868 SIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQ 927
            +D SR+N +G +       + L  L+     LT    + +  L +L+ L+LS N +SG 
Sbjct: 23  VLDNSRSN-EGKLEGLTDEFEELEFLSTINVGLT--SIANLPKLNKLKKLELSDNRVSGG 79

Query: 928 IPIQLANLTFLSFLNLSHNNL 948
           + +       L+ LNLS N +
Sbjct: 80  LEVLAEKCPNLTHLNLSGNKI 100

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 882 EEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQ-LANLTFLSF 940
             + +L  L  L LS N ++G +         L  L+LS N +     I+ L  L  L  
Sbjct: 58  ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS 117

Query: 941 LNLSHN 946
           L+L + 
Sbjct: 118 LDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 5/106 (4%)

Query: 650 SLSNNSIT-GVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGT 708
            L N+    G +       + L  L      L+  +   L K+++ L  L L  N +SG 
Sbjct: 23  VLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNK-LKKLELSDNRVSGG 79

Query: 709 LSVTFPGNCGLHTLDLNGNQLGG-TVPKSLANCRNLVVLDLGNNKI 753
           L V       L  L+L+GN++   +  + L    NL  LDL N ++
Sbjct: 80  LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 55.1 bits (133), Expect = 5e-08
 Identities = 54/323 (16%), Positives = 100/323 (30%), Gaps = 50/323 (15%)

Query: 105 QSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNRF 164
           + L+  F  +           L++L  LNL+         +     T +  + L S    
Sbjct: 50  ELLDHLFFHYEFQNQRFSAEVLSSLRQLNLAGVR------MTPVKCTVVAAV-LGSGRHA 102

Query: 165 GAPLKLENPNLSG-----LLQNLAELRELYLDGANISAPGIEW-CQALSSLVPKLQVLSL 218
              + L +  L       LL      R+L L   ++     +     L     ++  L L
Sbjct: 103 LDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRL 162

Query: 219 SSCYLSGP----IHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFF----NLTSLRLSHSR 270
           S+  L+      +   LA   S++ + L    L     E LA        L  L ++++ 
Sbjct: 163 SNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222

Query: 271 LNGTFPEKI---LQVH-TLETLDLSGNSL-------LQGSLPDFPKNSSLRTLMLSNTNF 319
              T    +    + H +LE L L  N L       L+         + +   +   T  
Sbjct: 223 AGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282

Query: 320 SGVLPDSIGN-LKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKF--VGPI---PS 373
           S      +    +NL+  D A           +    +L+  DL  ++   + P      
Sbjct: 283 SEYWSVILSEVQRNLNSWDRAR----------VQRHLELLLRDLEDSRGATLNPWRKAQL 332

Query: 374 LHMSKNLTHLDLSYNAL--PGAI 394
           L +   +  L     +   P   
Sbjct: 333 LRVEGEVRALLEQLGSSGSPSGS 355

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 32/177 (18%), Positives = 58/177 (32%), Gaps = 22/177 (12%)

Query: 649 FSLSNNSITGVIPETLCRA-----KYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGN 703
            +L+   +T V    +          L  ++L+  +L       L+ +      L L+ N
Sbjct: 77  LNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN 136

Query: 704 SLSGT----LSVTFPGN-CGLHTLDLNGNQLGGTVPKSLA----NCRNLVVLDLGNNKIR 754
           SL       L      + C + TL L+ N L       L        ++  L L +  + 
Sbjct: 137 SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG 196

Query: 755 DTFPWW----LENISSLRVLVLRSNSFYGNISCRENGD---SWPKLQIVDLASNNFG 804
           D         L+    L+ L +  N   G+ +           P L+++ L  N   
Sbjct: 197 DEGLELLAAQLDRNRQLQELNVAYNGA-GDTAALALARAAREHPSLELLHLYFNELS 252

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 45.1 bits (107), Expect = 8e-05
 Identities = 47/285 (16%), Positives = 78/285 (27%), Gaps = 53/285 (18%)

Query: 543 LKNQSKLFNLDLSDNQISGEIPNW-----VWEIGNVSLQYLNLSHNLLSSLQRPFSISDL 597
            +  S L  L+L+  +++           V   G  +L  +NL+   L        +   
Sbjct: 68  AEVLSSLRQLNLAGVRMTPV--KCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVF 125

Query: 598 SPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSIT 657
                L L  N L                +       +     +    T    LSNN +T
Sbjct: 126 LRARKLGLQLNSLG-------------PEACKDLRDLLLH---DQCQIT-TLRLSNNPLT 168

Query: 658 GVIPETLCRA----KYLLVLDLSKNKLSGKMPTCL---IKMSEILGVLNLRGNSLSGT-- 708
                 L         +  L L    L  +    L   +  +  L  LN+  N    T  
Sbjct: 169 AAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA 228

Query: 709 --LSVTFPGNCGLHTLDLNGNQLGGTVPKSLA-------NCRNLVVLDLGNNKIRDTFPW 759
             L+     +  L  L L  N+L     + L            +VV       + + +  
Sbjct: 229 LALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSV 288

Query: 760 WLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFG 804
            L         V R+     N   R       +L + DL  +   
Sbjct: 289 ILSE-------VQRNL----NSWDRARVQRHLELLLRDLEDSRGA 322

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.6 bits (103), Expect = 3e-04
 Identities = 53/317 (16%), Positives = 104/317 (32%), Gaps = 64/317 (20%)

Query: 452 SALDTIDLSGNRLEGPIPMSI--FDLR----NLKILILSSNKLNGTVQLAAIQRLHNLAK 505
           S+L  ++L+G R+  P+  ++    L      L  + L+S +L+       +       K
Sbjct: 72  SSLRQLNLAGVRM-TPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARK 130

Query: 506 LELSYNNLTVNAGSD-----SSFPSQVRTLRLASCKLRVI------PNLKNQSKLFNLDL 554
           L L  N+L   A  D          Q+ TLRL++  L           L   + + +L L
Sbjct: 131 LGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSL 190

Query: 555 SDNQISGEIPNWVWEIG-----NVSLQYLNLSHNLLSSLQRPFSISDLSP-------ITV 602
               +  E    +  +      N  LQ LN+++N         +   L+        + +
Sbjct: 191 LHTGLGDE---GLELLAAQLDRNRQLQELNVAYNGAG----DTAALALARAAREHPSLEL 243

Query: 603 LDLHSNQLQ----------GNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLS 652
           L L+ N+L           G       + V+      + +     +  +     +  S  
Sbjct: 244 LHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS-----EYWS-----VILSEV 293

Query: 653 NNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCL---IKMSEILGVLNLRGNSLSGT- 708
             ++       + R   LL+ DL  ++ +   P      +++   +  L  +  S     
Sbjct: 294 QRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGSPS 353

Query: 709 ---LSVTFPGNCGLHTL 722
                  F    G H  
Sbjct: 354 GSWSHPQFEKGAGHHHH 370

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.0 bits (129), Expect = 1e-07
 Identities = 23/99 (23%), Positives = 31/99 (31%), Gaps = 1/99 (1%)

Query: 293 NSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPD-SIGNLKNLSRLDLALCYFDGSIPTSL 351
                 SL   P   +L  L + N      L    +  L  L  L +         P + 
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 352 ANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNAL 390
               +L  L+LSFN             +L  L LS N L
Sbjct: 77  HFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.1 bits (119), Expect = 2e-06
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 468 IPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLT-VNAGSDSSFPSQ 526
               +    NL  L + + +    ++L  ++ L  L  L +  + L  V   +    P  
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR- 81

Query: 527 VRTLRLASCKLRVIP-NLKNQSKLFNLDLSDN 557
           +  L L+   L  +         L  L LS N
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.7 bits (118), Expect = 3e-06
 Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 4/88 (4%)

Query: 524 PSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHN 583
            S +R  R  +  L  + +L     L  L + + Q    +       G   L+ L +  +
Sbjct: 10  SSGLRCTRDGA--LDSLHHLPGAENLTELYIENQQHLQHLELRDLR-GLGELRNLTIVKS 66

Query: 584 LLSSLQRPFSISDLSPITVLDLHSNQLQ 611
            L  +  P +      ++ L+L  N L+
Sbjct: 67  GLRFVA-PDAFHFTPRLSRLNLSFNALE 93

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.2 bits (114), Expect = 8e-06
 Identities = 22/128 (17%), Positives = 37/128 (28%), Gaps = 29/128 (22%)

Query: 486 NKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPN--L 543
            +      L  +    NL +L +                            L+ +    L
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQ-----------------------HLQHLELRDL 52

Query: 544 KNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVL 603
           +   +L NL +  + +   +    +      L  LNLS N L SL   +       +  L
Sbjct: 53  RGLGELRNLTIVKSGLR-FVAPDAFH-FTPRLSRLNLSFNALESL--SWKTVQGLSLQEL 108

Query: 604 DLHSNQLQ 611
            L  N L 
Sbjct: 109 VLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.4 bits (112), Expect = 1e-05
 Identities = 25/131 (19%), Positives = 44/131 (33%), Gaps = 28/131 (21%)

Query: 360 LDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSI 419
           L  + +  +  +  L  ++NLT L +        +   D   L  L  + +  + L   +
Sbjct: 13  LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FV 71

Query: 420 PGSLFS-LPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNL 478
               F   P L +L                         +LS N LE  +        +L
Sbjct: 72  APDAFHFTPRLSRL-------------------------NLSFNALES-LSWKTVQGLSL 105

Query: 479 KILILSSNKLN 489
           + L+LS N L+
Sbjct: 106 QELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.5 bits (107), Expect = 6e-05
 Identities = 19/84 (22%), Positives = 27/84 (32%), Gaps = 2/84 (2%)

Query: 695 LGVLNLRGNSLSGTL-SVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKI 753
           L  L +        L      G   L  L +  + L    P +      L  L+L  N +
Sbjct: 33  LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92

Query: 754 RDTFPWWLENISSLRVLVLRSNSF 777
             +  W      SL+ LVL  N  
Sbjct: 93  E-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.7 bits (105), Expect = 9e-05
 Identities = 27/133 (20%), Positives = 40/133 (30%), Gaps = 36/133 (27%)

Query: 115 NATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPN 174
            A +    L    NLT L + N                L  L+                 
Sbjct: 19  GALDSLHHLPGAENLTELYIEN-------------QQHLQHLE----------------- 48

Query: 175 LSGLLQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKL 234
               L+ L ELR L +  + +    +    A     P+L  L+LS   L   +     + 
Sbjct: 49  -LRDLRGLGELRNLTIVKSGLRF--VAP-DAFHFT-PRLSRLNLSFNALES-LSWKTVQG 102

Query: 235 QSLSVIRLDQNDL 247
            SL  + L  N L
Sbjct: 103 LSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 3e-04
 Identities = 22/103 (21%), Positives = 31/103 (30%), Gaps = 4/103 (3%)

Query: 268 HSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPD--FPKNSSLRTLMLSNTNFSGVLPD 325
                      +     L  L +     LQ  L          LR L +  +    V PD
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPD 74

Query: 326 SIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFV 368
           +      LSRL+L+    + S+         L  L LS N   
Sbjct: 75  AFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 4e-04
 Identities = 20/97 (20%), Positives = 28/97 (28%), Gaps = 12/97 (12%)

Query: 712 TFPGNCGLHTLDLNGNQLGGTVPK-SLANCRNLVVLDLGNNKIR----DTFPWWLENISS 766
             PG   L  L +   Q    +    L     L  L +  + +R    D F         
Sbjct: 26  HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF----HFTPR 81

Query: 767 LRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNF 803
           L  L L  N+     S          LQ + L+ N  
Sbjct: 82  LSRLNLSFNAL---ESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 5e-04
 Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 6/97 (6%)

Query: 245 NDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQ-VHTLETLDLSGNSLLQGSLPD- 302
            D        L    NLT L + + +       + L+ +  L  L +  + L    +   
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL--RFVAPD 74

Query: 303 -FPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDL 338
            F     L  L LS      +   ++  L +L  L L
Sbjct: 75  AFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVL 110

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 5e-04
 Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 2/84 (2%)

Query: 867 TSIDFSRNNFDGPIPEE-IGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLS 925
           T +          +    +  L  L  L + ++ L    P A     +L  L+LS N L 
Sbjct: 34  TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE 93

Query: 926 GQIPIQLANLTFLSFLNLSHNNLV 949
                 +  L+ L  L LS N L 
Sbjct: 94  SLSWKTVQGLS-LQELVLSGNPLH 116

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 53.8 bits (128), Expect = 1e-07
 Identities = 30/223 (13%), Positives = 64/223 (28%), Gaps = 20/223 (8%)

Query: 151 TRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQA--LSS 208
             L  + +      G         +    +  A    L+    +     I W +   LS 
Sbjct: 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSP 166

Query: 209 LVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLA--DFFNLTSLRL 266
           ++  + +L+      +  +        +L  + +    L   V E +   D  NL  L L
Sbjct: 167 VLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVL 226

Query: 267 SHSRLNGTFPEKILQVH---------TLETLDLSGNSL---LQGSLPDFPKNSSLRTLML 314
                +  F   +              L+ L +        +     +      L T+ +
Sbjct: 227 YVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDI 286

Query: 315 SNTNFSGV----LPDSIGNLKNLSRLDLALCYFDGSIPTSLAN 353
           S    +      L D +  +K+L  +++   Y    +   L  
Sbjct: 287 SAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 47.6 bits (112), Expect = 1e-05
 Identities = 27/175 (15%), Positives = 52/175 (29%), Gaps = 15/175 (8%)

Query: 82  DLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPS-GLGSLTNLTNLNL----SN 136
            L+   I    + S        L+SL +       + +       L NL  L L     +
Sbjct: 173 LLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVED 232

Query: 137 AGFAGQIP-----IQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLD 191
            GF G +              L  L +       A  +     +      L +L  + + 
Sbjct: 233 YGFDGDMNVFRPLFSKDRFPNLKWLGIVD-----AEEQNVVVEMFLESDILPQLETMDIS 287

Query: 192 GANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQND 246
              ++  G          +  L+ +++   YLS  +   L K   + +   D  +
Sbjct: 288 AGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQE 342

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 47.3 bits (111), Expect = 2e-05
 Identities = 26/177 (14%), Positives = 52/177 (29%), Gaps = 25/177 (14%)

Query: 345 GSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPG-AISSTDWEHLS 403
             +   L  +  L  L +     +          NL  L++    LP   +       L 
Sbjct: 162 VDLSPVLDAMPLLNNLKIKGTNNLSIGKKPR--PNLKSLEIISGGLPDSVVEDILGSDLP 219

Query: 404 NLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNR 463
           NL  + L     +                   +       P FS      L  + +    
Sbjct: 220 NLEKLVLYVGVED----------------YGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263

Query: 464 LEGPIPMSIFD---LRNLKILILSSNKL--NGTVQLA-AIQRLHNLAKLELSYNNLT 514
            +  +     +   L  L+ + +S+  L   G   L   + ++ +L  + + YN L+
Sbjct: 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.9 bits (110), Expect = 2e-05
 Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 7/71 (9%)

Query: 885 GRLKSLHGLNLSQNALTGPIPSAIGN---LQQLESLDLSMNHLSG----QIPIQLANLTF 937
            R  +L  L +        +         L QLE++D+S   L+      +   +  +  
Sbjct: 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH 308

Query: 938 LSFLNLSHNNL 948
           L F+N+ +N L
Sbjct: 309 LKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.2 bits (98), Expect = 6e-04
 Identities = 22/151 (14%), Positives = 51/151 (33%), Gaps = 12/151 (7%)

Query: 666 RAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLN 725
              +   +D  + ++S      L  + + + +LN      +  LS+       L +L++ 
Sbjct: 142 EGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEII 201

Query: 726 GNQLGGTVPKSLANCR--NLVVLDL---GNNKIRDTFPWWLENI------SSLRVLVLRS 774
              L  +V + +      NL  L L     +   D        +       +L+ L +  
Sbjct: 202 SGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVD 261

Query: 775 NSFYGNI-SCRENGDSWPKLQIVDLASNNFG 804
                 +       D  P+L+ +D+++    
Sbjct: 262 AEEQNVVVEMFLESDILPQLETMDISAGVLT 292

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.9 bits (97), Expect = 9e-04
 Identities = 28/209 (13%), Positives = 63/209 (30%), Gaps = 35/209 (16%)

Query: 371 IPSLHMSKNLTHLDLSYNALPG-AISSTDWEHLSNLV--YVDLRYNSLNGSIPGSL--FS 425
           + +     +   L           IS  +   LS ++     L    + G+   S+    
Sbjct: 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP 191

Query: 426 LPMLQQLQLAENKFGG-LIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLR-------- 476
            P L+ L++        ++ +   +    L+ + L     +      +   R        
Sbjct: 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRF 251

Query: 477 -NLKILILSSNKL--NGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLA 533
            NLK L +   +              L  L  +++S   LT + G+              
Sbjct: 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT-DEGARL------------ 298

Query: 534 SCKLRVIPNLKNQSKLFNLDLSDNQISGE 562
                ++ ++     L  +++  N +S E
Sbjct: 299 -----LLDHVDKIKHLKFINMKYNYLSDE 322

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 6/90 (6%)

Query: 524 PSQVRTLRLASCKLRVIPN-LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSH 582
           P  V  L L   +  ++P  L N   L  +DLS+N+IS  + N  +      L  L LS+
Sbjct: 30  PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFS-NMTQLLTLILSY 87

Query: 583 NLLSSLQRPFSISD-LSPITVLDLHSNQLQ 611
           N L  +  P    D L  + +L LH N + 
Sbjct: 88  NRLRCI--PPRTFDGLKSLRLLSLHGNDIS 115

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 14/119 (11%)

Query: 347 IPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLV 406
           IP           L L  N+F      L   K+LT +DLS N +   +S+  + +++ L+
Sbjct: 29  IPRD----VT--ELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLL 81

Query: 407 YVDLRYNSLNGSIPGSLF-SLPMLQQLQLAENKFGGLIPE--FSNASSSALDTIDLSGN 462
            + L YN L   IP   F  L  L+ L L  N     +PE  F++ S+  L  + +  N
Sbjct: 82  TLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSA--LSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 430 QQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFD-LRNLKILILSSNKL 488
            +L L  N+F  +  E SN     L  IDLS NR+   +    F  +  L  LILS N+L
Sbjct: 34  TELYLDGNQFTLVPKELSNYKH--LTLIDLSNNRIST-LSNQSFSNMTQLLTLILSYNRL 90

Query: 489 NGTVQLAAIQRLHNLAKLELSYNNL 513
              +       L +L  L L  N++
Sbjct: 91  R-CIPPRTFDGLKSLRLLSLHGNDI 114

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 14/99 (14%)

Query: 346 SIPTSLANLTQLVYLDLSFNKFVGPIPSL------HMSKNLTHLDLSYNALPGAISSTDW 399
            +P  L+N   L  +DLS N+    I +L      +M+  L  L LSYN L   I    +
Sbjct: 45  LVPKELSNYKHLTLIDLSNNR----ISTLSNQSFSNMT-QLLTLILSYNRL-RCIPPRTF 98

Query: 400 EHLSNLVYVDLRYNSLNGSIPGSLF-SLPMLQQLQLAEN 437
           + L +L  + L  N ++  +P   F  L  L  L +  N
Sbjct: 99  DGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 8/92 (8%)

Query: 524 PSQVRTLRLASCKLRVIPN---LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNL 580
           P     L L   +L  I +         L  L+L  NQ++  I    +E G   +Q L L
Sbjct: 28  PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFE-GASHIQELQL 85

Query: 581 SHNLLSSLQRPFSISD-LSPITVLDLHSNQLQ 611
             N +  +     +   L  +  L+L+ NQ+ 
Sbjct: 86  GENKIKEI--SNKMFLGLHQLKTLNLYDNQIS 115

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 5/108 (4%)

Query: 381 THLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLF-SLPMLQQLQLAENKF 439
           T L L+ N L    S   +  L +LV ++L+ N L   I  + F     +Q+LQL ENK 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKI 90

Query: 440 GGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFD-LRNLKILILSSN 486
             +           L T++L  N++   +    F+ L +L  L L+SN
Sbjct: 91  KEI-SNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 3/86 (3%)

Query: 430 QQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFD-LRNLKILILSSNKL 488
            +L L +N+ G +  +        L  ++L  N+L G I  + F+   +++ L L  NK+
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKI 90

Query: 489 NGTVQLAAIQRLHNLAKLELSYNNLT 514
              +       LH L  L L  N ++
Sbjct: 91  K-EISNKMFLGLHQLKTLNLYDNQIS 115

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 8/134 (5%)

Query: 381 THLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLF-SLPMLQQLQLAENKF 439
           T+LDL  N+L  ++ +  ++ L++L  + L  N L  S+P  +F  L  L  L L+ N+ 
Sbjct: 31  TYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQL 88

Query: 440 GGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFD-LRNLKILILSSNKLNGTVQLAAIQ 498
             L P       + L  + L+ N+L+  +P  +FD L  LK L L  N+L  +V      
Sbjct: 89  QSL-PNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFD 145

Query: 499 RLHNLAKLELSYNN 512
           RL +L  + L ++N
Sbjct: 146 RLTSLQYIWL-HDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 13/112 (11%)

Query: 509 SYNNLTVNAGSD------SSFPSQVRTLRLASCKLRVIPN--LKNQSKLFNLDLSDNQIS 560
           S +  TV   S       +  P+Q   L L +  L+ +PN      + L  L L  N++ 
Sbjct: 6   SCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ 65

Query: 561 GEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISD-LSPITVLDLHSNQLQ 611
             +PN V+     SL YLNLS N L SL  P  + D L+ +  L L++NQLQ
Sbjct: 66  -SLPNGVFN-KLTSLTYLNLSTNQLQSL--PNGVFDKLTQLKELALNTNQLQ 113

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.8 bits (96), Expect = 9e-04
 Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 13/113 (11%)

Query: 505 KLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPN-----LKNQSKLFNLDLSDNQI 559
            L+L  N+L           + +  L L   KL+ +PN     L +   L  L+LS NQ+
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTS---LTYLNLSTNQL 88

Query: 560 SGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISD-LSPITVLDLHSNQLQ 611
              +PN V++     L+ L L+ N L SL  P  + D L+ +  L L+ NQL+
Sbjct: 89  Q-SLPNGVFD-KLTQLKELALNTNQLQSL--PDGVFDKLTQLKDLRLYQNQLK 137

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 19/121 (15%), Positives = 39/121 (32%), Gaps = 10/121 (8%)

Query: 275 FPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSN----TNFS-GVLPDSIGN 329
            P   L  + ++ +D + + ++            +  + L       +     L      
Sbjct: 53  LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENL 112

Query: 330 LKNLSRLDLALCYF--DGSIPTSLANLTQLVYLDLSFNKFVGP--IPSLHMSKNLTHLDL 385
            K++  +++  C    D  I  +L +   L YL LS    V            +L  L+L
Sbjct: 113 QKSMLEMEIISCGNVTDKGI-IALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171

Query: 386 S 386
            
Sbjct: 172 K 172

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 7/94 (7%)

Query: 521 SSFPSQVRTLRLASCKLRVIPN--LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYL 578
           +  P+  + L L   ++  +      +   L  L L  NQ+   +P  V++     L  L
Sbjct: 36  AGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFD-SLTQLTVL 93

Query: 579 NLSHNLLSSLQRPFSISD-LSPITVLDLHSNQLQ 611
           +L  N L+ L  P ++ D L  +  L +  N+L 
Sbjct: 94  DLGTNQLTVL--PSAVFDRLVHLKELFMCCNKLT 125

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 5/62 (8%)

Query: 551 NLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISD-LSPITVLDLHSNQ 609
            L+L  N++   +P+ V++     L  L+LS N + SL  P  + D L+ +T+L LH N+
Sbjct: 32  RLELESNKLQ-SLPHGVFD-KLTQLTKLSLSQNQIQSL--PDGVFDKLTKLTILYLHENK 87

Query: 610 LQ 611
           LQ
Sbjct: 88  LQ 89

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1044
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-20
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.001
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-17
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-18
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-11
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-10
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.003
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-09
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	6e-07
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-08
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	4e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	7e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.003
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	5e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.004
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.002
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	1e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	6e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.001
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.002
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.002
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.001

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 90.8 bits (224), Expect = 6e-20
 Identities = 67/415 (16%), Positives = 127/415 (30%), Gaps = 62/415 (14%)

Query: 544 KNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVL 603
              ++     L    ++  +     +     +  L      + S+     +  L+ +T +
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQTDLD----QVTTLQADRLGIKSID---GVEYLNNLTQI 71

Query: 604 DLHSNQLQGNIPYPP-PKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPE 662
           +  +NQL    P     K V +  +NN      P      ++    F+     I  +   
Sbjct: 72  NFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNL 131

Query: 663 TLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGN------ 716
           T      L    +S       + +                 +L+    +    N      
Sbjct: 132 TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS 191

Query: 717 -----CGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLV 771
                  L +L    NQ+    P       NL  L L  N+++D     L ++++L  L 
Sbjct: 192 VLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKD--IGTLASLTNLTDLD 247

Query: 772 LRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKD 831
           L +N                KL  + L +N      P   +T+   +  +E++ +     
Sbjct: 248 LANNQISNLAPL----SGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI 303

Query: 832 VHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLH 891
            + + L                             T +    NN     P  +  L  L 
Sbjct: 304 SNLKNL-----------------------------TYLTLYFNNISDISP--VSSLTKLQ 332

Query: 892 GLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHN 946
            L  + N ++    S++ NL  +  L    N +S   P  LANLT ++ L L+  
Sbjct: 333 RLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 84.3 bits (207), Expect = 9e-18
 Identities = 73/396 (18%), Positives = 141/396 (35%), Gaps = 47/396 (11%)

Query: 92  IDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMT 151
           + ++     L  + +L           I  G+  L NLT +N SN       P+    +T
Sbjct: 34  VTDTVSQTDLDQVTTLQADRL--GIKSI-DGVEYLNNLTQINFSNNQLTDITPL--KNLT 88

Query: 152 RLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQALSSLVP 211
           +LV + +++             N                                + +  
Sbjct: 89  KLVDILMNNNQIADITPLANLTN------------------------LTGLTLFNNQITD 124

Query: 212 KLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRL 271
              + +L++         +++ + +LS +   Q          L    NLT+L       
Sbjct: 125 IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS 184

Query: 272 N-GTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNL 330
           N  +    + ++  LE+L  + N +    +      ++L  L L+          ++ +L
Sbjct: 185 NKVSDISVLAKLTNLESLIATNNQI--SDITPLGILTNLDELSLNGNQLKD--IGTLASL 240

Query: 331 KNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNAL 390
            NL+ LDLA        P  L+ LT+L  L L  N+     P       LT L       
Sbjct: 241 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP----LAGLTALTNLELNE 294

Query: 391 PGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNAS 450
                 +   +L NL Y+ L +N+++   P  + SL  LQ+L  A NK    +   +N +
Sbjct: 295 NQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-VSSLANLT 351

Query: 451 SSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSN 486
           +  ++ +    N++    P++  +L  +  L L+  
Sbjct: 352 N--INWLSAGHNQISDLTPLA--NLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 82.4 bits (202), Expect = 5e-17
 Identities = 78/381 (20%), Positives = 143/381 (37%), Gaps = 36/381 (9%)

Query: 249 SPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSS 308
           +P+ +   D      ++    + N T       +  + TL      +   S+      ++
Sbjct: 10  TPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGI--KSIDGVEYLNN 67

Query: 309 LRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFV 368
           L  +  SN   + + P  + NL  L  + +         P +       + L  +    +
Sbjct: 68  LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI 125

Query: 369 GPIPSLHMSKNLTHLDLS------------YNALPGAISSTDWEHLSNLVYVDLRYNSLN 416
            P+ +L     L     +               L      TD + L+NL  ++    S N
Sbjct: 126 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN 185

Query: 417 -GSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDL 475
             S    L  L  L+ L    N+   + P     +   LD + L+GN+L+     ++  L
Sbjct: 186 KVSDISVLAKLTNLESLIATNNQISDITPLGILTN---LDELSLNGNQLKDIG--TLASL 240

Query: 476 RNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASC 535
            NL  L L++N+++    LA +  L  L +L+L  N ++    S  +  + +  L L   
Sbjct: 241 TNLTDLDLANNQISN---LAPLSGLTKLTELKLGANQISNI--SPLAGLTALTNLELNEN 295

Query: 536 KLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGN-VSLQYLNLSHNLLSSLQRPFSI 594
           +L  I  + N   L  L L  N IS   P     + +   LQ L  ++N +S +    S+
Sbjct: 296 QLEDISPISNLKNLTYLTLYFNNISDISP-----VSSLTKLQRLFFANNKVSDVS---SL 347

Query: 595 SDLSPITVLDLHSNQLQGNIP 615
           ++L+ I  L    NQ+    P
Sbjct: 348 ANLTNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 81.6 bits (200), Expect = 8e-17
 Identities = 80/424 (18%), Positives = 146/424 (34%), Gaps = 59/424 (13%)

Query: 352 ANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLR 411
             L + +   L        +    +   +T L        G  S    E+L+NL  ++  
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQTDLD-QVTTLQADRL---GIKSIDGVEYLNNLTQINFS 74

Query: 412 YNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMS 471
            N L    P  L +L  L  + +  N+   + P  +  + + L   +     ++    ++
Sbjct: 75  NNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 132

Query: 472 IFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLR 531
             +                +  ++ I  L  L  L+       V      +  + +  L 
Sbjct: 133 NLNRLE-----------LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD 181

Query: 532 LASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRP 591
           ++S K+  I  L   + L +L  ++NQIS   P  +      +L  L+L+ N L  +   
Sbjct: 182 ISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT----NLDELSLNGNQLKDIG-- 235

Query: 592 FSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSL 651
            +++ L+ +T LDL +NQ+    P                       +      T    L
Sbjct: 236 -TLASLTNLTDLDLANNQISNLAP-----------------------LSGLTKLT-ELKL 270

Query: 652 SNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSV 711
             N I+ + P     A         +   +       I   + L  L L  N++S    V
Sbjct: 271 GANQISNISPLAGLTALTN-----LELNENQLEDISPISNLKNLTYLTLYFNNISDISPV 325

Query: 712 TFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLV 771
           +      L  L    N++      SLAN  N+  L  G+N+I D  P  L N++ +  L 
Sbjct: 326 SSLTK--LQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLG 379

Query: 772 LRSN 775
           L   
Sbjct: 380 LNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 80.8 bits (198), Expect = 1e-16
 Identities = 46/179 (25%), Positives = 73/179 (40%), Gaps = 13/179 (7%)

Query: 211 PKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSR 270
             L  LSL+   L      +LA L +L+ + L  N + +  P  L+    LT L+L  ++
Sbjct: 219 TNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 274

Query: 271 LNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNL 330
           ++   P   L   T        N      +       +L  L L   N S + P  + +L
Sbjct: 275 ISNISPLAGLTALTNL----ELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSL 328

Query: 331 KNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNA 389
             L RL  A      S  +SLANLT + +L    N+     P  +++  +T L L+  A
Sbjct: 329 TKLQRLFFANNKV--SDVSSLANLTNINWLSAGHNQISDLTPLANLT-RITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 78.5 bits (192), Expect = 7e-16
 Identities = 81/387 (20%), Positives = 142/387 (36%), Gaps = 41/387 (10%)

Query: 212 KLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRL 271
           +     L    ++  +  S   L  ++ ++ D+  + S   + +    NLT +  S+++L
Sbjct: 23  EKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQL 78

Query: 272 NGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPD------ 325
               P  +  +  L  + ++ N +   +      N +  TL  +       L +      
Sbjct: 79  TDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 136

Query: 326 ------SIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSK- 378
                 +I ++  LS L        G+  T L  L  L  L+              ++K 
Sbjct: 137 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL 196

Query: 379 -NLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAEN 437
            NL  L  + N +           L+NL  + L  N L     G+L SL  L  L LA N
Sbjct: 197 TNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANN 251

Query: 438 KFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAI 497
           +   L P         L  + L  N++    P     L  L  L       N    ++ I
Sbjct: 252 QISNLAPLSGLTK---LTELKLGANQISNISP-----LAGLTALTNLELNENQLEDISPI 303

Query: 498 QRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDN 557
             L NL  L L +NN++    S  S  ++++ L  A+ K+  + +L N + +  L    N
Sbjct: 304 SNLKNLTYLTLYFNNIS--DISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHN 361

Query: 558 QISGEIPNWVWEIGNV-SLQYLNLSHN 583
           QIS   P     + N+  +  L L+  
Sbjct: 362 QISDLTP-----LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 77.0 bits (188), Expect = 2e-15
 Identities = 63/396 (15%), Positives = 132/396 (33%), Gaps = 29/396 (7%)

Query: 316 NTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLH 375
           +T  + +  D+   L    +  L       ++  S  +L Q+  L       +  I  + 
Sbjct: 9   DTPINQIFTDT--ALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLG-IKSIDGVE 63

Query: 376 MSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLA 435
              NLT ++ S N L       +   L +++  + +   +      +  +   L   Q+ 
Sbjct: 64  YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT 123

Query: 436 ENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIF--------DLRNLKILILSSNK 487
           +      +   +    S+    D+S       +    F         L NL  L      
Sbjct: 124 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS 183

Query: 488 LNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQS 547
            N    ++ + +L NL  L  + N ++    +     + +  L L   +L+ I  L + +
Sbjct: 184 SNKVSDISVLAKLTNLESLIATNNQISDI--TPLGILTNLDELSLNGNQLKDIGTLASLT 241

Query: 548 KLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHS 607
            L +LDL++NQIS   P      G   L  L L  N +S++     ++  +   +    +
Sbjct: 242 NLTDLDLANNQISNLAPLS----GLTKLTELKLGANQISNISPLAGLT--ALTNLELNEN 295

Query: 608 NQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRA 667
                +          +    N+ +   P  + +          +NN ++     +L   
Sbjct: 296 QLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQ-RLFFANNKVSD--VSSLANL 350

Query: 668 KYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGN 703
             +  L    N++S   P   +     +  L L   
Sbjct: 351 TNINWLSAGHNQISDLTPLANLTR---ITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 72.3 bits (176), Expect = 7e-14
 Identities = 76/423 (17%), Positives = 143/423 (33%), Gaps = 60/423 (14%)

Query: 500 LHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQI 559
           L    K  L   N+T       +   QV TL+     ++ I  ++  + L  ++ S+NQ+
Sbjct: 21  LAEKMKTVLGKTNVT--DTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL 78

Query: 560 SGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPP 619
           +   P          L+ L    ++L +  +   I+ L+ +T L   +          P 
Sbjct: 79  TDITP----------LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPL 128

Query: 620 KAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNK 679
           K +         +++I D        +L      N +T + P         L +  +K  
Sbjct: 129 KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS 188

Query: 680 LSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLAN 739
               +       S     L    N +S    +    N  L  L LNGNQL      +LA+
Sbjct: 189 DISVLAKLTNLES-----LIATNNQISDITPLGILTN--LDELSLNGNQLKD--IGTLAS 239

Query: 740 CRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLA 799
             NL  LDL NN+I +  P                                 KL  + L 
Sbjct: 240 LTNLTDLDLANNQISNLAPLS----------------------------GLTKLTELKLG 271

Query: 800 SNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMEL 859
           +N      P   +T+   +  +E++ +      + + L     Y+ +   ++        
Sbjct: 272 ANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSS---- 327

Query: 860 VKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDL 919
              L+    + F+ N         +  L +++ L+   N ++   P  + NL ++  L L
Sbjct: 328 ---LTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 380

Query: 920 SMN 922
           +  
Sbjct: 381 NDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 70.0 bits (170), Expect = 4e-13
 Identities = 58/374 (15%), Positives = 121/374 (32%), Gaps = 48/374 (12%)

Query: 458 DLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLT--- 514
            L    +   +  +  DL  +  L      +     +  ++ L+NL ++  S N LT   
Sbjct: 28  VLGKTNVTDTVSQT--DLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFSNNQLTDIT 82

Query: 515 ---------VNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPN 565
                        +++          L +     + N +        +L++        N
Sbjct: 83  PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN 142

Query: 566 WVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPP-PKAVLV 624
            + +I  +S        +  + +     +++L+ +  LD+ SN++              +
Sbjct: 143 TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 202

Query: 625 DYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKM 684
             +NN  +   P  I   +      SL+ N +      TL     L  LDL+ N++S   
Sbjct: 203 IATNNQISDITPLGILTNLD---ELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA 257

Query: 685 PTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCG-----------------LHTLDLNGN 727
           P   +     L +   + +++S    +T   N                   L  L L  N
Sbjct: 258 PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN 317

Query: 728 QLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENG 787
            +    P  +++   L  L   NNK+ D     L N++++  L    N            
Sbjct: 318 NISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLA--- 370

Query: 788 DSWPKLQIVDLASN 801
            +  ++  + L   
Sbjct: 371 -NLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.9 bits (136), Expect = 5e-09
 Identities = 44/267 (16%), Positives = 94/267 (35%), Gaps = 22/267 (8%)

Query: 698 LNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTF 757
             L   +++ T+S T      + TL  +   +       +    NL  ++  NN++ D  
Sbjct: 27  TVLGKTNVTDTVSQTDLDQ--VTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDIT 82

Query: 758 PWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKA 817
           P  L+N++ L  +++ +N            +        +  ++    +          +
Sbjct: 83  P--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELS 140

Query: 818 MMSDEDEAQSNFKDVHFEFLKIADF----------YYQDAVTVTSKGLEMELVKILSIFT 867
             +  D +  +      +                   +     ++K  ++ ++  L+   
Sbjct: 141 SNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLE 200

Query: 868 SIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQ 927
           S+  + N      P  I    +L  L+L+ N L       + +L  L  LDL+ N +S  
Sbjct: 201 SLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNL 256

Query: 928 IPIQLANLTFLSFLNLSHNNLVGKIPI 954
            P  L+ LT L+ L L  N +    P+
Sbjct: 257 AP--LSGLTKLTELKLGANQISNISPL 281

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.5 bits (114), Expect = 3e-06
 Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 9/126 (7%)

Query: 35  QSLLLQMKSSLVFNSSLSFRMVQWSQSNDCCTWSGVDCDEAGRVIGLDLSEESISAGIDN 94
             L L        +       +   + N+              +  L L   +IS    +
Sbjct: 266 TELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS----D 321

Query: 95  SSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLV 154
            SP+ SL  LQ L  A N        S L +LTN+  L+  +   +   P+  + +TR+ 
Sbjct: 322 ISPVSSLTKLQRLFFANNKV---SDVSSLANLTNINWLSAGHNQISDLTPL--ANLTRIT 376

Query: 155 TLDLSS 160
            L L+ 
Sbjct: 377 QLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 35/252 (13%), Positives = 74/252 (29%), Gaps = 44/252 (17%)

Query: 738 ANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVD 797
                 +   LG   + DT      ++  +  L          I   +  +    L  ++
Sbjct: 19  TALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRL----GIKSIDGVEYLNNLTQIN 72

Query: 798 LASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEM 857
            ++N      P K +T    ++ + ++        +   L     +      +       
Sbjct: 73  FSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 132

Query: 858 ELVKILSIFTSIDFSRNNFDGPIPE----------------------------------E 883
            L ++     +I            +                                   
Sbjct: 133 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV 192

Query: 884 IGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNL 943
           + +L +L  L  + N ++   P  I     L+ L L+ N L       LA+LT L+ L+L
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLTDLDL 248

Query: 944 SHNNLVGKIPIS 955
           ++N +    P+S
Sbjct: 249 ANNQISNLAPLS 260

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 86.0 bits (211), Expect = 1e-18
 Identities = 83/351 (23%), Positives = 119/351 (33%), Gaps = 49/351 (13%)

Query: 30  CQSDQQSLLLQMKSSLVFNSSLSFRMVQWSQSNDCC--TWSGVDCDEAG---RVIGLDLS 84
           C    +  LLQ+K  L   ++LS     W  + DCC  TW GV CD      RV  LDLS
Sbjct: 3   CNPQDKQALLQIKKDLGNPTTLS----SWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLS 58

Query: 85  EESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIP 144
             ++       S L +L YL  L +         IP  +  LT L  L +++   +G IP
Sbjct: 59  GLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP 118

Query: 145 IQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQ 204
             +S +  LVTLD S                                             
Sbjct: 119 DFLSQIKTLVTLDFSYNALS------------------------------------GTLP 142

Query: 205 ALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSL 264
              S +P L  ++     +SG I  S      L        + L+          NL  +
Sbjct: 143 PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFV 202

Query: 265 RLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLP 324
            LS + L G                    + L   L     + +L  L L N    G LP
Sbjct: 203 DLSRNMLEGDASVLF-GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP 261

Query: 325 DSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFV--GPIPS 373
             +  LK L  L+++     G IP    NL +      + NK +   P+P+
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 81.7 bits (200), Expect = 3e-17
 Identities = 59/280 (21%), Positives = 106/280 (37%), Gaps = 7/280 (2%)

Query: 653 NNSITGVIPETLCRAKYLLVLDLSKNKLSGKM--PTCLIKMSEILGVLNLRGNSLSGTLS 710
           N +  GV+ +T  +   +  LDLS   L      P+ L  +  +  +     N+L G + 
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94

Query: 711 VTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVL 770
                   LH L +    + G +P  L+  + LV LD   N +  T P  + ++ +L  +
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154

Query: 771 VLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFK 830
               N   G I     G        + ++ N       +   T     ++  D +++  +
Sbjct: 155 TFDGNRISGAI-PDSYGSFSKLFTSMTISRNRL---TGKIPPTFANLNLAFVDLSRNMLE 210

Query: 831 DVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSL 890
                         +  +   S   ++  V +      +D   N   G +P+ + +LK L
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270

Query: 891 HGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPI 930
           H LN+S N L G IP   GNLQ+ +    + N      P+
Sbjct: 271 HSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 72.9 bits (177), Expect = 3e-14
 Identities = 68/268 (25%), Positives = 103/268 (38%), Gaps = 8/268 (2%)

Query: 207 SSLVPKLQVLSLSSCYLSG--PIHPSLAKLQSLSVIRLDQND-LLSPVPEFLADFFNLTS 263
            +   ++  L LS   L    PI  SLA L  L+ + +   + L+ P+P  +A    L  
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105

Query: 264 LRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVL 323
           L ++H+ ++G  P+ + Q+ TL TLD S N+L     P      +L  +       SG +
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 324 PDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHL 383
           PDS G+   L                       L ++DLS N   G    L  S   T  
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 384 DLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLI 443
                               NL  +DLR N + G++P  L  L  L  L ++ N   G I
Sbjct: 226 IHLAKNSLAFDLGKVGLS-KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 444 PEFSNASSSALDTIDLSGNRL--EGPIP 469
           P+  N      D    + N+     P+P
Sbjct: 285 PQGGNLQR--FDVSAYANNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 65.9 bits (159), Expect = 5e-12
 Identities = 51/263 (19%), Positives = 92/263 (34%), Gaps = 8/263 (3%)

Query: 447 SNASSSALDTIDLSGNRLEG--PIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLA 504
           ++  +  ++ +DLSG  L    PIP S+ +L  L  L +            AI +L  L 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 505 KLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVI--PNLKNQSKLFNLDLSDNQISGE 562
            L +++ N++       S    + TL  +   L     P++ +   L  +    N+ISG 
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 563 IPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAV 622
           IP+       +        + L    + P + ++L+   V    +               
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTG--KIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222

Query: 623 LVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSG 682
                    + +                L NN I G +P+ L + K+L  L++S N L G
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

Query: 683 KMPTCLIKMSEILGVLNLRGNSL 705
           ++P           V     N  
Sbjct: 283 EIPQGGNLQR--FDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 64.8 bits (156), Expect = 1e-11
 Identities = 67/307 (21%), Positives = 113/307 (36%), Gaps = 34/307 (11%)

Query: 316 NTNFSGVLPDSIGNLKNLSRLDLALCYFDG--SIPTSLANLTQLVYLDLS--FNKFVGPI 371
           N  + GVL D+      ++ LDL+         IP+SLANL  L +L +    N      
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94

Query: 372 PSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQ 431
           P++     L +L +++              +  LV +D  YN+L+G++P S+ SLP L  
Sbjct: 95  PAIAKLTQLHYLYITHTN-VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153

Query: 432 LQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGT 491
           +    N+  G IP+   + S    ++ +S NRL G IP +                    
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA------------------ 195

Query: 492 VQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFN 551
                   L+               +    S  +  +     +     +  +     L  
Sbjct: 196 -------NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNG 248

Query: 552 LDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQ 611
           LDL +N+I G +P  + ++    L  LN+S N L          +L    V    +N+  
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKF--LHSLNVSFNNLCG--EIPQGGNLQRFDVSAYANNKCL 304

Query: 612 GNIPYPP 618
              P P 
Sbjct: 305 CGSPLPA 311

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 84.7 bits (208), Expect = 3e-18
 Identities = 59/315 (18%), Positives = 104/315 (33%), Gaps = 38/315 (12%)

Query: 299 SLPDFPKN--SSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQ 356
            L   PK+       L L N   + +      NLKNL  L L         P + A L +
Sbjct: 21  GLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 80

Query: 357 LVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPG-AISSTDWEHLSNLVYVDLRYNSL 415
           L  L LS N+       +  +     L +  N +     S  +  +   +V +       
Sbjct: 81  LERLYLSKNQLKELPEKMPKTL--QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 138

Query: 416 NGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDL 475
           +G   G+   +  L  +++A+      I         +L  + L GN++      S+  L
Sbjct: 139 SGIENGAFQGMKKLSYIRIADTN----ITTIPQGLPPSLTELHLDGNKITKVDAASLKGL 194

Query: 476 RNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASC 535
            NL  L LS N ++      ++    +L +L L+ N L    G  +              
Sbjct: 195 NNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNNKLVKVPGGLADHKY---------- 243

Query: 536 KLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIG----NVSLQYLNLSHNLLSSLQ-R 590
                        +  + L +N IS    N     G      S   ++L  N +   + +
Sbjct: 244 -------------IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ 290

Query: 591 PFSISDLSPITVLDL 605
           P +   +     + L
Sbjct: 291 PSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.1 bits (196), Expect = 1e-16
 Identities = 42/269 (15%), Positives = 92/269 (34%), Gaps = 11/269 (4%)

Query: 260 NLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNF 319
           +   L L ++++          +  L TL L  N + + S   F     L  L LS    
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 320 SGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKN 379
             +       L+ L   +  +     S+   L  +  +               +    K 
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 151

Query: 380 LTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKF 439
           L+++ ++   +    ++       +L  + L  N +      SL  L  L +L L+ N  
Sbjct: 152 LSYIRIADTNI----TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

Query: 440 GGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKL-----NGTVQL 494
             +       ++  L  + L+ N+L   +P  + D + ++++ L +N +     N     
Sbjct: 208 SAVDNGSLA-NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 265

Query: 495 AAIQRLHNLAKLELSYNNLTVNAGSDSSF 523
               +  + + + L  N +       S+F
Sbjct: 266 GYNTKKASYSGVSLFSNPVQYWEIQPSTF 294

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.8 bits (190), Expect = 6e-16
 Identities = 51/284 (17%), Positives = 92/284 (32%), Gaps = 12/284 (4%)

Query: 207 SSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRL 266
             L P   +L L +  ++         L++L  + L  N +    P   A    L  L L
Sbjct: 27  KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 86

Query: 267 SHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDS 326
           S ++L     +    +  L   +     + +       +   +  L  +    SG+   +
Sbjct: 87  SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIENGA 145

Query: 327 IGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLS 386
              +K LS + +A      +IP  L     L  L L  NK      +     N       
Sbjct: 146 FQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 202

Query: 387 YNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGL---- 442
                 A+ +    +  +L  + L  N L   +PG L     +Q + L  N    +    
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSND 261

Query: 443 -IPEFSNASSSALDTIDLSGNRLE-GPIPMSIFD-LRNLKILIL 483
             P   N   ++   + L  N ++   I  S F  +     + L
Sbjct: 262 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.7 bits (156), Expect = 1e-11
 Identities = 52/308 (16%), Positives = 89/308 (28%), Gaps = 40/308 (12%)

Query: 65  CTWSGVDCDEAGRVIGLDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLG 124
           C    V C         DL  E +   +              L+L  N            
Sbjct: 10  CHLRVVQCS--------DLGLEKVPKDLPPD--------TALLDLQNNKIT-EIKDGDFK 52

Query: 125 SLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAE 184
           +L NL  L L N   +   P   + + +L  L LS               L  L + + +
Sbjct: 53  NLKNLHTLILINNKISKISPGAFAPLVKLERLYLS------------KNQLKELPEKMPK 100

Query: 185 LRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQ 244
             +  L         +            +  L  +    SG  + +   ++ LS IR+  
Sbjct: 101 TLQ-ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 159

Query: 245 NDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFP 304
            ++ +          +LT L L  +++       +  ++ L  L LS NS+         
Sbjct: 160 TNITTIPQGLPP---SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 216

Query: 305 KNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDG------SIPTSLANLTQLV 358
               LR L L+N     V P  + + K +  + L               P          
Sbjct: 217 NTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 275

Query: 359 YLDLSFNK 366
            + L  N 
Sbjct: 276 GVSLFSNP 283

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.1 bits (152), Expect = 4e-11
 Identities = 54/303 (17%), Positives = 106/303 (34%), Gaps = 17/303 (5%)

Query: 454 LDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNL 513
           L  +  S   LE  +P  +    +  +L L +NK+   ++    + L NL  L L  N +
Sbjct: 12  LRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKI 67

Query: 514 TVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNV 573
           +  +    +   ++  L L+  +L+ +P  K    L  L + +N+I+    +    +  +
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPE-KMPKTLQELRVHENEITKVRKSVFNGLNQM 126

Query: 574 SLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTS 633
            +  L  ++ L SS     +   +  ++ + +    +       PP    +    N  T 
Sbjct: 127 IVVELG-TNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITK 185

Query: 634 SIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSE 693
                +    +       S NSI+ V   +L    +L  L L+ NKL             
Sbjct: 186 VDAASLKGLNNLAKLGL-SFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY- 243

Query: 694 ILGVLNLRGNSLSGTLSVTFPG------NCGLHTLDLNGNQL--GGTVPKSLANCRNLVV 745
            + V+ L  N++S   S  F              + L  N +      P +         
Sbjct: 244 -IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 302

Query: 746 LDL 748
           + L
Sbjct: 303 VQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.8 bits (146), Expect = 2e-10
 Identities = 58/275 (21%), Positives = 98/275 (35%), Gaps = 10/275 (3%)

Query: 716 NCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSN 775
            C L  +  +   L   VPK L    +  +LDL NNKI +      +N+ +L  L+L +N
Sbjct: 9   QCHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN 65

Query: 776 SFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFE 835
                           KL+ + L+ N       +   T  +  + + +   +  +   F 
Sbjct: 66  KISKISP--GAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENE--ITKVRKSVFN 121

Query: 836 FLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNL 895
            L            + S G+E    + +   + I  +  N    IP+ +    SL  L+L
Sbjct: 122 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHL 178

Query: 896 SQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLVGKIPIS 955
             N +T    +++  L  L  L LS N +S      LAN   L  L+L++N LV      
Sbjct: 179 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 238

Query: 956 TQLQSFLATSFEGNKGLCGPPLNVCRTNSSKALPS 990
              +         N        + C    +    S
Sbjct: 239 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS 273

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.5 bits (140), Expect = 1e-09
 Identities = 43/260 (16%), Positives = 86/260 (33%), Gaps = 14/260 (5%)

Query: 695 LGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIR 754
             +L+L+ N ++      F     LHTL L  N++    P + A    L  L L  N+++
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 755 DTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITS 814
           +      + +  LRV          ++    N     +L    L S+       Q     
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 152

Query: 815 WKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRN 874
               ++D +   +         L                 ++   +K L+    +  S N
Sbjct: 153 SYIRIADTN--ITTIPQGLPPSLTELHLDGNK-----ITKVDAASLKGLNNLAKLGLSFN 205

Query: 875 NFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSG------QI 928
           +        +     L  L+L+ N L   +P  + + + ++ + L  N++S         
Sbjct: 206 SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 264

Query: 929 PIQLANLTFLSFLNLSHNNL 948
           P         S ++L  N +
Sbjct: 265 PGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.1 bits (139), Expect = 2e-09
 Identities = 46/306 (15%), Positives = 80/306 (26%), Gaps = 25/306 (8%)

Query: 624 VDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGK 683
           V  S+      +P D+      T    L NN IT +        K L  L L  NK+S  
Sbjct: 15  VQCSDLGLEK-VPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 70

Query: 684 MPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNL 743
            P     + + L  L L  N L             L   +    ++  +V   L     +
Sbjct: 71  SPGAFAPLVK-LERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 129

Query: 744 VVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNF 803
             L     K         + +  L  + +   +              P L  + L  N  
Sbjct: 130 -ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-----TTIPQGLPPSLTELHLDGNKI 183

Query: 804 GGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKI- 862
                                  S       +   +A+  +   + + +  L      + 
Sbjct: 184 TKVDAASLKGLNNLAKLG----LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA 239

Query: 863 -LSIFTSIDFSRNNFDG------PIPEEIGRLKSLHGLNLSQNALT--GPIPSAIGNLQQ 913
                  +    NN           P    +  S  G++L  N +      PS    +  
Sbjct: 240 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 299

Query: 914 LESLDL 919
             ++ L
Sbjct: 300 RAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.6 bits (122), Expect = 2e-07
 Identities = 26/126 (20%), Positives = 41/126 (32%), Gaps = 3/126 (2%)

Query: 867 TSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSG 926
             +  S    +  +P+++        L+L  N +T        NL+ L +L L  N +S 
Sbjct: 13  RVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 927 QIPIQLANLTFLSFLNLSHNNLVGKIPISTQLQSFLATSFEGNKGLCGPPLNVCRTNSSK 986
             P   A L  L  L LS N L        +    L         +     N        
Sbjct: 70  ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 129

Query: 987 ALPSSP 992
            L ++P
Sbjct: 130 ELGTNP 135

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.4 bits (173), Expect = 6e-14
 Identities = 47/257 (18%), Positives = 81/257 (31%), Gaps = 3/257 (1%)

Query: 207 SSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRL 266
             +    Q + L    +S     S    ++L+++ L  N L             L  L L
Sbjct: 28  VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 267 SHSRLNGT-FPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPD 325
           S +    +  P     +  L TL L    L +     F   ++L+ L L +     +  D
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147

Query: 326 SIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDL 385
           +  +L NL+ L L           +   L  L  L L  N+     P             
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 386 SYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPE 445
            +     A+ +     L  L Y+ L  N               LQ+ + + ++    +P+
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL-WAWLQKFRGSSSEVPCSLPQ 266

Query: 446 -FSNASSSALDTIDLSG 461
             +      L   DL G
Sbjct: 267 RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (156), Expect = 1e-11
 Identities = 51/251 (20%), Positives = 82/251 (32%), Gaps = 5/251 (1%)

Query: 168 LKLENPNLSGLLQN-LAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGP 226
           + L    +S +        R L +   + +        A + L    Q+    +  L   
Sbjct: 37  IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96

Query: 227 IHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLE 286
              +   L  L  + LD+  L    P        L  L L  + L     +    +  L 
Sbjct: 97  DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156

Query: 287 TLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGS 346
            L L GN +       F    SL  L+L     + V P +  +L  L  L L        
Sbjct: 157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 216

Query: 347 IPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLV 406
              +LA L  L YL L+ N +V    +  +   L     S + +P ++     + L+   
Sbjct: 217 PTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLP----QRLAGRD 272

Query: 407 YVDLRYNSLNG 417
              L  N L G
Sbjct: 273 LKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (155), Expect = 1e-11
 Identities = 52/327 (15%), Positives = 87/327 (26%), Gaps = 59/327 (18%)

Query: 624 VDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGK 683
                    + +P  I    + +    L  N I+ V   +    + L +L L  N L+  
Sbjct: 16  TSCPQQGLQA-VPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 684 MPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNL 743
                  ++ +  +       L      TF G   LHTL L+   L    P        L
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131

Query: 744 VVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNF 803
             L L +N ++        ++ +L  L L  N                 L  + L  N  
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP--ERAFRGLHSLDRLLLHQNRV 189

Query: 804 GGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKIL 863
               P       + M                                             
Sbjct: 190 AHVHPHAFRDLGRLMT-------------------------------------------- 205

Query: 864 SIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNH 923
                +    NN      E +  L++L  L L+ N       +       L+    S + 
Sbjct: 206 -----LYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSE 259

Query: 924 LSGQIPIQLANLTFLSFLNLSHNNLVG 950
           +   +P +LA         L+ N+L G
Sbjct: 260 VPCSLPQRLAGR---DLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 3e-08
 Identities = 55/261 (21%), Positives = 87/261 (33%), Gaps = 37/261 (14%)

Query: 451 SSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNK----------------------- 487
            +A   I L GNR+      S    RNL IL L SN                        
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 488 -LNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPN--LK 544
               +V  A    L  L  L L    L           + ++ L L    L+ +P+   +
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 545 NQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLD 604
           +   L +L L  N+IS          G  SL  L L  N ++ +  P +  DL  +  L 
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFR--GLHSLDRLLLHQNRVAHVH-PHAFRDLGRLMTLY 207

Query: 605 LHSN---QLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIP 661
           L +N    L      P      +  ++N +            ++   F  S++ +   +P
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDNPWVCDC--RARPLWAWLQKFRGSSSEVPCSLP 265

Query: 662 ETLCRAKYLLVLDLSKNKLSG 682
           + L       +  L+ N L G
Sbjct: 266 QRL---AGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 6e-08
 Identities = 51/270 (18%), Positives = 78/270 (28%), Gaps = 10/270 (3%)

Query: 714 PGNC-----GLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLR 768
           PG C        T       L   VP  +        + L  N+I            +L 
Sbjct: 3   PGACVCYNEPKVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLT 59

Query: 769 VLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSN 828
           +L L SN      +    G +  +   +    N     V          + +   +    
Sbjct: 60  ILWLHSNVLARIDAAAFTGLALLEQLDLS--DNAQLRSVDPATFHGLGRLHTLHLDRCGL 117

Query: 829 FKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLK 888
            +     F  +A   Y        + L  +  + L   T +    N            L 
Sbjct: 118 QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177

Query: 889 SLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNL 948
           SL  L L QN +    P A  +L +L +L L  N+LS      LA L  L +L L+ N  
Sbjct: 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

Query: 949 VGKIPISTQLQSFLATSFEGNKGLCGPPLN 978
           V                   ++  C  P  
Sbjct: 238 VCDCRARPLWAWLQKFRGSSSEVPCSLPQR 267

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 43/283 (15%), Positives = 88/283 (31%), Gaps = 8/283 (2%)

Query: 523 FPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSH 582
           +     T       L+ +P     +    + L  N+IS           N+++ +L+ + 
Sbjct: 9   YNEPKVTTSCPQQGLQAVPVGIPAA-SQRIFLHGNRISHVPAASFRACRNLTILWLHSNV 67

Query: 583 NLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNF 642
                      ++ L  + + D    +      +     +   + +      +   +   
Sbjct: 68  LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG 127

Query: 643 VSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRG 702
           ++   +  L +N++  +  +T      L  L L  N++S         +   L  L L  
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS-LDRLLLHQ 186

Query: 703 NSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLE 762
           N ++      F     L TL L  N L     ++LA  R L  L L +N           
Sbjct: 187 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC----- 241

Query: 763 NISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGG 805
               L   + +       + C           +  LA+N+  G
Sbjct: 242 RARPLWAWLQKFRGSSSEVPC-SLPQRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 4e-07
 Identities = 51/270 (18%), Positives = 85/270 (31%), Gaps = 40/270 (14%)

Query: 371 IPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSI----------- 419
           +P   +      + L  N +   + +  +    NL  + L  N L               
Sbjct: 26  VPV-GIPAASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 420 --------------PGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLE 465
                         P +   L  L  L L       L P      ++ L  + L  N L+
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA-LQYLYLQDNALQ 142

Query: 466 GPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYN-NLTVNAGSDSSFP 524
                +  DL NL  L L  N+++  V   A + LH+L +L L  N    V+  +     
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201

Query: 525 SQVRTLRLASCKLRVIPNLK-NQSKLFNLDLSDNQISGEIPN-WVWEIGNVSLQYLNLSH 582
             +     A+    +          L  L L+DN    +     +W      LQ    S 
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWA----WLQKFRGSS 257

Query: 583 NLLSSLQRPFSISDLSPITVLDLHSNQLQG 612
           + +     P  ++      +  L +N LQG
Sbjct: 258 SEVPC-SLPQRLAGRD---LKRLAANDLQG 283

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.1 bits (151), Expect = 9e-11
 Identities = 61/480 (12%), Positives = 125/480 (26%), Gaps = 42/480 (8%)

Query: 285 LETLDLSGNSLLQGSLPD-FPKNSSLRTLMLSNTNFSGV----LPDSIGNLKNLSRLDLA 339
           +++LD+    L      +  P     + + L +   +      +  ++     L+ L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 340 LCYFDGSIPTSLA-----NLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAI 394
                      +         ++  L L      G    +  S   T   L        +
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELH----L 119

Query: 395 SSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSAL 454
           S          +  +   +         L    +               P+F   + S  
Sbjct: 120 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 179

Query: 455 DTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLT 514
           D  +     L   +  S   L  LK+        N       +    +L +L L  N L 
Sbjct: 180 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 239

Query: 515 VNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVS 574
               ++        + RL +  +                L   +   E+     E+G+  
Sbjct: 240 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 299

Query: 575 LQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSS 634
            + L  +            +   S       H + +     +     +  +   ++    
Sbjct: 300 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 359

Query: 635 IPDDIGNFVSFTLFFSLSNNSITGV----IPETLCRAKYLLVLDLSKNKLSGKMPTCLIK 690
           +   +G   S      L++  ++      +  TL     L  LDLS N L       L++
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419

Query: 691 MSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLA----NCRNLVVL 746
                    +R               C L  L L        +   L     +  +L V+
Sbjct: 420 S--------VRQP------------GCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.7 bits (150), Expect = 1e-10
 Identities = 51/471 (10%), Positives = 114/471 (24%), Gaps = 36/471 (7%)

Query: 477 NLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCK 536
           +++ L +   +L+       +  L     + L    LT     D           ++S  
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKD-----------ISSA- 50

Query: 537 LRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEI---GNVSLQYLNLSHNLLSSLQRPFS 593
                 L+    L  L+L  N++     + V +     +  +Q L+L +  L+       
Sbjct: 51  ------LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 104

Query: 594 ISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSN 653
            S L  +  L                               +  +  +  + +     S 
Sbjct: 105 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 164

Query: 654 NSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTF 713
                   E       +    +       K   C ++  ++        N       V  
Sbjct: 165 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS 224

Query: 714 PGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLR 773
             +     L  N     G              L                ++  +      
Sbjct: 225 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES 284

Query: 774 SNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVH 833
                   +   +  +    + +            + C             +    ++  
Sbjct: 285 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC---SFTAACCSHFSSVLAQNRF 341

Query: 834 FEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDG----PIPEEIGRLKS 889
              L+I++   +DA          +   +L     +  +  +        +   +    S
Sbjct: 342 LLELQISNNRLEDAGVRELCQGLGQPGSVL---RVLWLADCDVSDSSCSSLAATLLANHS 398

Query: 890 LHGLNLSQNALTGPIPSAIG-----NLQQLESLDLSMNHLSGQIPIQLANL 935
           L  L+LS N L       +          LE L L   + S ++  +L  L
Sbjct: 399 LRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (127), Expect = 6e-08
 Identities = 52/467 (11%), Positives = 105/467 (22%), Gaps = 41/467 (8%)

Query: 502 NLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISG 561
           ++  L++    L     SD+ +               ++P L+       + L D  ++ 
Sbjct: 3   DIQSLDIQCEEL-----SDARWAE-------------LLPLLQQ---CQVVRLDDCGLTE 41

Query: 562 EIPNWVWEI--GNVSLQYLNLSHNLLSSLQRPFSISDLS----PITVLDLHSNQLQGNIP 615
                +      N +L  LNL  N L  +     +  L      I  L L +  L G   
Sbjct: 42  ARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 101

Query: 616 YPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDL 675
                 +    +      S        +       L        +    C         L
Sbjct: 102 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 161

Query: 676 SKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPK 735
           +    +      L   +  +    +R        S        L +  +  +        
Sbjct: 162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 221

Query: 736 SLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQI 795
             +      +    N             +      +     +   I+ +  GD    L+ 
Sbjct: 222 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA 281

Query: 796 VDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGL 855
                      +                E               +  +     +  S  L
Sbjct: 282 -----KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVL 336

Query: 856 EMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTG----PIPSAIGNL 911
                 +    ++                     L  L L+   ++      + + +   
Sbjct: 337 AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN 396

Query: 912 QQLESLDLSMNHLSGQIPIQLA-----NLTFLSFLNLSHNNLVGKIP 953
             L  LDLS N L     +QL          L  L L       ++ 
Sbjct: 397 HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME 443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 1e-05
 Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 11/94 (11%)

Query: 306 NSSLRTLMLSNTNFSGV-LPDSIGNLKNLSRLDLALCYFDG----SIPTSLANLTQLVYL 360
           +  +++L +     S     + +  L+    + L  C         I ++L     L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 361 DLSFNKFVGPIPSL------HMSKNLTHLDLSYN 388
           +L  N+                S  +  L L   
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 1e-05
 Identities = 56/472 (11%), Positives = 120/472 (25%), Gaps = 36/472 (7%)

Query: 454 LDTIDLSGNRLEGPIPMSIFD-LRNLKILILSSNKLN--GTVQLA-AIQRLHNLAKLELS 509
           + ++D+    L       +   L+  +++ L    L       ++ A++    LA+L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 510 YNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWE 569
            N L      D      ++ L+  SCK++             L L +      +      
Sbjct: 64  SNELG-----DVGVHCVLQGLQTPSCKIQ------------KLSLQNCC----LTGAGCG 102

Query: 570 IGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNN 629
           + + +L+ L     L  S               L     +L+         +        
Sbjct: 103 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 162

Query: 630 SFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLI 689
           S   + PD     VS           +   + ++ C+ + L +        + +    ++
Sbjct: 163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 222

Query: 690 KMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLAN-CRNLVVLDL 748
                L  L L  N L               +  L    +      +        V+   
Sbjct: 223 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK 282

Query: 749 GNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVP 808
            + K        L +  +  +            S      S+        +S     R  
Sbjct: 283 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 342

Query: 809 QKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLE--MELVKILSIF 866
            +   S   +                  L++      D   V+          +      
Sbjct: 343 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD---VSDSSCSSLAATLLANHSL 399

Query: 867 TSIDFSRNNFDGPIPEEIGR-----LKSLHGLNLSQNALTGPIPSAIGNLQQ 913
             +D S N        ++          L  L L     +  +   +  L++
Sbjct: 400 RELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 2e-05
 Identities = 25/100 (25%), Positives = 37/100 (37%), Gaps = 13/100 (13%)

Query: 684 MPTCLIKMSEILGVLNLRGNSLSGT----LSVTFPGNCGLHTLDLNGNQLGGTVPKSLA- 738
           +   L +   +L VL L    +S +    L+ T   N  L  LDL+ N LG      L  
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419

Query: 739 ----NCRNLVVLDLGNNKIRDTFPWWLENIS----SLRVL 770
                   L  L L +    +     L+ +     SLRV+
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 2e-05
 Identities = 20/95 (21%), Positives = 31/95 (32%), Gaps = 11/95 (11%)

Query: 713 FPGNCGLHTLDLNGNQLGGTVPKSLA----NCRNLVVLDLGNNKIRDTFPWWL-----EN 763
                 L  L L    +  +   SLA       +L  LDL NN + D     L     + 
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 764 ISSLRVLVLRSNSFYGNI--SCRENGDSWPKLQIV 796
              L  LVL    +   +    +      P L+++
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 3e-05
 Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 8/94 (8%)

Query: 377 SKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNG----SIPGSLFSLPMLQQL 432
           S ++  LD+    L  A  +     L     V L    L       I  +L   P L +L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 433 QLAENKFGG----LIPEFSNASSSALDTIDLSGN 462
            L  N+ G      + +     S  +  + L   
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 4e-05
 Identities = 22/120 (18%), Positives = 36/120 (30%), Gaps = 29/120 (24%)

Query: 104 LQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNR 163
           +QSL++     +       L  L     + L + G                         
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCK------------------ 45

Query: 164 FGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEW-CQALSSLVPKLQVLSLSSCY 222
                     ++S  L+    L EL L    +   G+    Q L +   K+Q LSL +C 
Sbjct: 46  ----------DISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 5e-04
 Identities = 18/92 (19%), Positives = 28/92 (30%), Gaps = 9/92 (9%)

Query: 81  LDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFN---ATEIPSGLGSLTNLTNLNLSNA 137
           LD+  E +S     +  L  L+  Q + L           +I S L     L  LNL + 
Sbjct: 7   LDIQCEELS-DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN 65

Query: 138 GFAGQIPIQVSGM-----TRLVTLDLSSLNRF 164
                    V         ++  L L +    
Sbjct: 66  ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 6e-04
 Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 9/96 (9%)

Query: 153 LVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEW-CQALSSLVP 211
           + +LD+           L +   + LL  L + + + LD   ++    +    AL    P
Sbjct: 4   IQSLDIQCEE-------LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVN-P 55

Query: 212 KLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDL 247
            L  L+L S  L       + +       ++ +  L
Sbjct: 56  ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 8e-04
 Identities = 21/101 (20%), Positives = 33/101 (32%), Gaps = 5/101 (4%)

Query: 136 NAGFAGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANI 195
           +AG            + L  L L+              +L+  L     LREL L    +
Sbjct: 354 DAGVRELCQGLGQPGSVLRVLWLAD-CDVSDS---SCSSLAATLLANHSLRELDLSNNCL 409

Query: 196 SAPGIEW-CQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQ 235
              GI    +++      L+ L L   Y S  +   L  L+
Sbjct: 410 GDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 0.001
 Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 30/117 (25%)

Query: 104 LQSLNLAFNMFN---ATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSS 160
           L+ L LA    +    + + + L +  +L  L+LSN        +  +G+ +LV      
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSN------NCLGDAGILQLV------ 418

Query: 161 LNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLS 217
                            + Q    L +L L     S    +  QAL    P L+V+S
Sbjct: 419 ---------------ESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.002
 Identities = 18/83 (21%), Positives = 25/83 (30%), Gaps = 9/83 (10%)

Query: 283 HTLETLDLSGNSLLQGSLPDFP----KNSSLRTLMLSNTNFSGVLPDSIG-----NLKNL 333
             L  L L+   +   S          N SLR L LSN          +          L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 334 SRLDLALCYFDGSIPTSLANLTQ 356
            +L L   Y+   +   L  L +
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.002
 Identities = 21/91 (23%), Positives = 29/91 (31%), Gaps = 10/91 (10%)

Query: 213 LQVLSLSSCYLSGPIHPSLAK-LQSLSVIRLDQNDL----LSPVPEFLADFFNLTSLRLS 267
           +Q L +    LS      L   LQ   V+RLD   L       +   L     L  L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 268 HSRLNGTFPEKILQV-----HTLETLDLSGN 293
            + L       +LQ        ++ L L   
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.004
 Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 9/81 (11%)

Query: 260 NLTSLRLSHSRLNGT----FPEKILQVHTLETLDLSGNSLLQGSLPDFPK-----NSSLR 310
            L  L L+   ++ +        +L  H+L  LDLS N L    +    +        L 
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 311 TLMLSNTNFSGVLPDSIGNLK 331
            L+L +  +S  + D +  L+
Sbjct: 430 QLVLYDIYWSEEMEDRLQALE 450

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.9 bits (146), Expect = 2e-10
 Identities = 42/270 (15%), Positives = 90/270 (33%), Gaps = 14/270 (5%)

Query: 673 LDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQL-GG 731
           LDL+   L   +   L+  S+ +       + +   L+  F     +  +DL+ + +   
Sbjct: 5   LDLTGKNLHPDVTGRLL--SQGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVS 61

Query: 732 TVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWP 791
           T+   L+ C  L  L L   ++ D     L   S+L  L L   S +   + +    S  
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 792 KLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVT 851
           +L  ++L+          +   +  +    +       K++    L        + V + 
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 852 S------KGLEMELVKILSIFTSIDFSR-NNFDGPIPEEIGRLKSLHGLNLSQNALTGPI 904
                  K    +    L+    +  SR  +       E+G + +L  L +      G +
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 905 PSAIGNLQQLESLDLSMNHLSGQIPIQLAN 934
                  + L  L ++ +H +      + N
Sbjct: 242 QLLK---EALPHLQINCSHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 7e-08
 Identities = 33/267 (12%), Positives = 77/267 (28%), Gaps = 16/267 (5%)

Query: 335 RLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAI 394
            LDL        +   L +   ++      +    P+        + H+DLS + +  + 
Sbjct: 4   TLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST 62

Query: 395 SSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPE-------FS 447
                   S L  + L    L+  I  +L     L +L L+                   
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 448 NASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLE 507
               +     D +   ++  +      +  L +     N     +     +  + +    
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 508 LSYNNLTVNAGSDSSFPSQVRTLRLASCKL---RVIPNLKNQSKLFNLDLSDNQISGEIP 564
                L  +   +    + ++ L L+ C       +  L     L  L +      G + 
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242

Query: 565 NWVWEIGNVSLQYLNLSHNLLSSLQRP 591
                    +L +L ++ +  +++ RP
Sbjct: 243 LLKE-----ALPHLQINCSHFTTIARP 264

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 4e-07
 Identities = 44/258 (17%), Positives = 90/258 (34%), Gaps = 10/258 (3%)

Query: 78  VIGLDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNA 137
           VI        +   +      FS   +Q ++L+ ++   + +   L   + L NL+L   
Sbjct: 25  VIAFRCPRSFMDQPLAEH---FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL 81

Query: 138 GFAGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISA 197
             +  I   ++  + LV L+LS  + F    +     L      L EL   +        
Sbjct: 82  RLSDPIVNTLAKNSNLVRLNLSGCSGFS---EFALQTLLSSCSRLDELNLSWCFDFTEKH 138

Query: 198 PGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLAD 257
             +       ++          +   S            + +   D   L +   +    
Sbjct: 139 VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ 198

Query: 258 FFNLTSLRLSH-SRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSN 316
              L  L LS    +      ++ ++ TL+TL + G  +  G+L    +  +L  L ++ 
Sbjct: 199 LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKE--ALPHLQINC 255

Query: 317 TNFSGVLPDSIGNLKNLS 334
           ++F+ +   +IGN KN  
Sbjct: 256 SHFTTIARPTIGNKKNQE 273

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 2e-05
 Identities = 41/269 (15%), Positives = 84/269 (31%), Gaps = 11/269 (4%)

Query: 381 THLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFG 440
             LDL+   L   ++         ++      + ++  +    FS   +Q + L+ +   
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQ--GVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIE 59

Query: 441 GLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAI--- 497
                   +  S L  + L G RL  PI  ++    NL  L LS         L  +   
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 498 -QRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSD 556
             RL  L               + +     +  L L+  +  +  +  +       +L  
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179

Query: 557 NQISGEIPN----WVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQG 612
             +S  +      +        LQ+L+LS       +    + ++  +  L +      G
Sbjct: 180 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDG 239

Query: 613 NIPYPPPKAVLVDYSNNSFTSSIPDDIGN 641
            +         +  + + FT+     IGN
Sbjct: 240 TLQLLKEALPHLQINCSHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 4e-05
 Identities = 49/292 (16%), Positives = 94/292 (32%), Gaps = 27/292 (9%)

Query: 456 TIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTV 515
           T+DL+G  L   +   +   + +       + ++    LA       +  ++LS + + V
Sbjct: 4   TLDLTGKNLHPDVTGRLL-SQGVIAFRCPRSFMDQP--LAEHFSPFRVQHMDLSNSVIEV 60

Query: 516 NAGSD-SSFPSQVRTLRLASCKL--RVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGN 572
           +      S  S+++ L L   +L   ++  L   S L  L+LS      E          
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 573 VSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFT 632
             L  LNLS                      + H      ++     +  L  Y  N   
Sbjct: 121 SRLDELNLSWC----------------FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK 164

Query: 633 SSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSK-NKLSGKMPTCLIKM 691
           S +   +    +        +  +     +   +  YL  L LS+   +  +    L ++
Sbjct: 165 SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI 224

Query: 692 SEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNL 743
              L  L + G    GTL +       L  L +N +        ++ N +N 
Sbjct: 225 PT-LKTLQVFGIVPDGTLQLLKE---ALPHLQINCSHFTTIARPTIGNKKNQ 272

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 5e-05
 Identities = 12/90 (13%), Positives = 33/90 (36%), Gaps = 3/90 (3%)

Query: 867 TSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSG 926
            ++D +  N    +   +     +      ++ +  P+        +++ +DLS + +  
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGVIA-FRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIEV 60

Query: 927 -QIPIQLANLTFLSFLNLSHNNLVGKIPIS 955
             +   L+  + L  L+L    L   I  +
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNT 90

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 6e-04
 Identities = 50/276 (18%), Positives = 86/276 (31%), Gaps = 18/276 (6%)

Query: 105 QSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAG-FAGQIPIQVSGMTRLVTLDLSSLNR 163
           Q+L+L     +    P   G L +   +       F  Q   +     R+  +DLS+   
Sbjct: 3   QTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV- 57

Query: 164 FGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQALSSLV----PKLQVLSLS 219
                 +E   L G+L   ++L+ L L+G  +S P +      S+LV          S  
Sbjct: 58  ------IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF 111

Query: 220 SCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKI 279
           +          L +L         +  +   V         L       +         +
Sbjct: 112 ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV 171

Query: 280 LQVHTLETLDLSGNSLLQGSLPD-FPKNSSLRTLMLSNTNF-SGVLPDSIGNLKNLSRLD 337
            +   L  LDLS + +L+      F + + L+ L LS            +G +  L  L 
Sbjct: 172 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ 231

Query: 338 LALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPS 373
           +     DG++      L  L      F     P   
Sbjct: 232 VFGIVPDGTLQLLKEALPHLQINCSHFTTIARPTIG 267

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 34/230 (14%), Positives = 71/230 (30%), Gaps = 12/230 (5%)

Query: 212 KLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDL-LSPVPEFLADFFNLTSLRLSHSR 270
            +        ++  P+         +  + L  + + +S +   L+    L +L L   R
Sbjct: 24  GVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 82

Query: 271 LNGTFPEKILQVHTLETLDLSGNSLLQGS--------LPDFPKNSSLRTLMLSNTNFSGV 322
           L+      + +   L  L+LSG S                  + +       +  +    
Sbjct: 83  LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 142

Query: 323 LPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGP--IPSLHMSKNL 380
           +      +  L+            + T +     LV+LDLS +  +             L
Sbjct: 143 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 202

Query: 381 THLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQ 430
            HL LS        +  +   +  L  + +     +G++     +LP LQ
Sbjct: 203 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 252

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (141), Expect = 7e-10
 Identities = 55/210 (26%), Positives = 77/210 (36%), Gaps = 10/210 (4%)

Query: 281 QVHTLETLDLSGNSLLQGSLP-DFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLA 339
           +V +   ++    +L   +LP D PK+     L LS          ++     L++L+L 
Sbjct: 8   KVASHLEVNCDKRNLT--ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 340 LCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDW 399
                         L  L  LDLS N+             LT LD+S+N L   +     
Sbjct: 64  RAELTKLQVDG--TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGAL 120

Query: 400 EHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDL 459
             L  L  + L+ N L    PG L   P L++L LA N    L     N   + LDT+ L
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN-LDTLLL 179

Query: 460 SGNRLEGPIPMSIFDLRNLKILILSSNKLN 489
             N L   IP   F    L    L  N   
Sbjct: 180 QENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (127), Expect = 4e-08
 Identities = 36/238 (15%), Positives = 63/238 (26%), Gaps = 34/238 (14%)

Query: 685 PTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLV 744
           P C +        +N    +L+  L    P +     L L+ N L      +L     L 
Sbjct: 2   PICEVSKVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLT 58

Query: 745 VLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFG 804
            L+L   ++                                   + P L  +DL+ N   
Sbjct: 59  QLNLDRAELTKLQVDG----------------------------TLPVLGTLDLSHNQLQ 90

Query: 805 GRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILS 864
                        ++       ++        L      Y     + +  L   L+    
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT--LPPGLLTPTP 148

Query: 865 IFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMN 922
               +  + NN        +  L++L  L L +N+L   IP        L    L  N
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 4e-06
 Identities = 42/200 (21%), Positives = 67/200 (33%), Gaps = 27/200 (13%)

Query: 624 VDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGK 683
           V+    + T+ +P D+    +      LS N +      TL     L  L+L + +L+  
Sbjct: 15  VNCDKRNLTA-LPPDLPKDTTI---LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL 70

Query: 684 MPTCLIK--------------------MSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLD 723
                +                         L VL++  N L+        G   L  L 
Sbjct: 71  QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130

Query: 724 LNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISC 783
           L GN+L    P  L     L  L L NN + +     L  + +L  L+L+ NS Y   + 
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY---TI 187

Query: 784 RENGDSWPKLQIVDLASNNF 803
            +       L    L  N +
Sbjct: 188 PKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 1e-05
 Identities = 35/184 (19%), Positives = 49/184 (26%), Gaps = 3/184 (1%)

Query: 207 SSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRL 266
             L     +L LS   L      +L     L+ + LD+          +     +     
Sbjct: 27  PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA---ELTKLQVDGTLPVLGTLD 83

Query: 267 SHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDS 326
                  + P     +  L  LD+S N L    L        L+ L L       + P  
Sbjct: 84  LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143

Query: 327 IGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLS 386
           +     L +L LA           L  L  L  L L  N           S  L    L 
Sbjct: 144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203

Query: 387 YNAL 390
            N  
Sbjct: 204 GNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 1e-05
 Identities = 41/189 (21%), Positives = 57/189 (30%), Gaps = 12/189 (6%)

Query: 117 TEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLS 176
           T +P  L    + T L+LS           +   TRL  L+L         +    P L 
Sbjct: 23  TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLG 80

Query: 177 GLLQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCY--------LSGPIH 228
            L  +  +L+ L L G  + A  +            L  L                  + 
Sbjct: 81  TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140

Query: 229 PSLAKLQSLSVI-RLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLET 287
           P L           L  N+L       L    NL +L L  + L  T P+     H L  
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPF 199

Query: 288 LDLSGNSLL 296
             L GN  L
Sbjct: 200 AFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 4e-04
 Identities = 32/213 (15%), Positives = 63/213 (29%), Gaps = 12/213 (5%)

Query: 400 EHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDL 459
             +++ + V+    +L  ++P  L        L L+EN         +    + L  ++L
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLA-TLMPYTRLTQLNL 62

Query: 460 SGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGS 519
                E         L  L  L LS N+   ++ L                   ++  G+
Sbjct: 63  DRA--ELTKLQVDGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119

Query: 520 DSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDL-SDNQISGEIPNWVWEIGNVSLQYL 578
                         +    + P L   +        ++N ++      +  + N  L  L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN--LDTL 177

Query: 579 NLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQ 611
            L  N L ++  P        +    LH N   
Sbjct: 178 LLQENSLYTI--PKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 4e-04
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 3/65 (4%)

Query: 883 EIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLN 942
           E+ ++ S   +N  +  LT  +P  +        L LS N L       L   T L+ LN
Sbjct: 5   EVSKVASHLEVNCDKRNLTA-LPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 943 LSHNN 947
           L    
Sbjct: 62  LDRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 867 TSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNH 923
             ++  + N    +P ++   K    L+LS+N L     + +    +L  L+L    
Sbjct: 13  LEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 33/179 (18%), Positives = 55/179 (30%), Gaps = 3/179 (1%)

Query: 502 NLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISG 561
           +   L LS N L   + +     +++  L L   +L  +        L  LDLS NQ+  
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS 91

Query: 562 EIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKA 621
                        L         L        + +L  + +       L   +  P PK 
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLTSLPL-GALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150

Query: 622 VLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKL 680
             +  +NN+ T      +    +      L  NS+   IP+    +  L    L  N  
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLD-TLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (136), Expect = 2e-09
 Identities = 29/232 (12%), Positives = 52/232 (22%), Gaps = 4/232 (1%)

Query: 716 NCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSN 775
           +C         +++   +P  L   RN + L     K+R            L  + +  N
Sbjct: 7   HCSNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN 63

Query: 776 SFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQ-SNFKDVHF 834
                I      +     +I    +NN     P+                   +  DVH 
Sbjct: 64  DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 123

Query: 835 EFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLN 894
                                    V +      +  ++N             +      
Sbjct: 124 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNL 183

Query: 895 LSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHN 946
              N L                LD+S   +       L NL  L   +  + 
Sbjct: 184 SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (116), Expect = 6e-07
 Identities = 27/208 (12%), Positives = 53/208 (25%), Gaps = 6/208 (2%)

Query: 574 SLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTS 633
           +   L      L  +Q   + S    +  +++  N +   I       +   +      +
Sbjct: 30  NAIELRFVLTKLRVIQ-KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88

Query: 634 SIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLL-----VLDLSKNKLSGKMPTCL 688
           +    I       L            I       K        +       +        
Sbjct: 89  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 148

Query: 689 IKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDL 748
           + +S    +L L  N +    +  F G         + N L              V+LD+
Sbjct: 149 VGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 208

Query: 749 GNNKIRDTFPWWLENISSLRVLVLRSNS 776
              +I     + LEN+  LR     +  
Sbjct: 209 SRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 0.001
 Identities = 31/236 (13%), Positives = 65/236 (27%), Gaps = 13/236 (5%)

Query: 284 TLETLDLSGNSLLQGSLP-DFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCY 342
           +        + +    +P D P+N     L    T    +   +     +L +++++   
Sbjct: 9   SNRVFLCQESKVT--EIPSDLPRN--AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND 64

Query: 343 FDGSIPTSLANLTQLVYLDLS---FNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDW 399
               I   + +    ++        N       +     NL +L +S   +         
Sbjct: 65  VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI 124

Query: 400 EHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDL 459
             L  ++       +++     S   L     +          I   +   +   +    
Sbjct: 125 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLS 184

Query: 460 SGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLE-LSYNNLT 514
             N LE              IL +S  +++          L NL KL   S  NL 
Sbjct: 185 DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG----LENLKKLRARSTYNLK 236

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 54.7 bits (130), Expect = 1e-08
 Identities = 36/221 (16%), Positives = 66/221 (29%), Gaps = 23/221 (10%)

Query: 738 ANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVD 797
               N + +  G + + DT      ++  +  L          ++  E       L  ++
Sbjct: 16  PALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGT----GVTTIEGVQYLNNLIGLE 69

Query: 798 LASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEM 857
           L  N      P K +T    +    +  ++       + +K  D        VT      
Sbjct: 70  LKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLS 129

Query: 858 ELVKILSIFTSIDF-------------SRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPI 904
            L  +      I               S  N        +  L  L  L    N ++   
Sbjct: 130 NLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS 189

Query: 905 PSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSH 945
           P  + +L  L  + L  N +S   P  LAN + L  + L++
Sbjct: 190 P--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.6 bits (109), Expect = 6e-06
 Identities = 40/234 (17%), Positives = 81/234 (34%), Gaps = 20/234 (8%)

Query: 540 IPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSP 599
           I      +    +    + ++  +     +     +  L+     +++++    +  L+ 
Sbjct: 12  IFPDPALANAIKIAAGKSNVTDTVTQADLD----GITTLSAFGTGVTTIE---GVQYLNN 64

Query: 600 ITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGV 659
           +  L+L  NQ    I    P   L   +    + +   ++          +L   S    
Sbjct: 65  LIGLELKDNQ----ITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQIT 120

Query: 660 IPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGL 719
               L     L VL L  N+++   P   +   +      L   +   +          L
Sbjct: 121 DVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQ-----YLSIGNAQVSDLTPLANLSKL 175

Query: 720 HTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLR 773
            TL  + N++    P  LA+  NL+ + L NN+I D  P  L N S+L ++ L 
Sbjct: 176 TTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.3 bits (103), Expect = 3e-05
 Identities = 41/231 (17%), Positives = 84/231 (36%), Gaps = 20/231 (8%)

Query: 352 ANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLR 411
             L   + +    +     +    +   +T L      +    +    ++L+NL+ ++L+
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQADLD-GITTLSAFGTGV---TTIEGVQYLNNLIGLELK 71

Query: 412 YNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMS 471
            N +    P    +     +L     K    I    +  +  L +  ++           
Sbjct: 72  DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQIT-------DVTP 124

Query: 472 IFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLR 531
           +  L NL++L L  N++     LA +  L  L     S  N  V+  +  +  S++ TL+
Sbjct: 125 LAGLSNLQVLYLDLNQITNISPLAGLTNLQYL-----SIGNAQVSDLTPLANLSKLTTLK 179

Query: 532 LASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSH 582
               K+  I  L +   L  + L +NQIS   P         +L  + L++
Sbjct: 180 ADDNKISDISPLASLPNLIEVHLKNNQISDVSPLA----NTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 6e-04
 Identities = 33/220 (15%), Positives = 63/220 (28%), Gaps = 18/220 (8%)

Query: 457 IDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVN 516
           I    + +   +  +  DL  +  L      +     +  +Q L+NL  LEL  N +T  
Sbjct: 24  IAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKDNQIT-- 76

Query: 517 AGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQ 576
                   + ++ L   +        LKN S +  L                        
Sbjct: 77  ------DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 577 YLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIP 636
              L  +L             +   +   ++            K   +   +N  +   P
Sbjct: 131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP 190

Query: 637 DDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLS 676
             + +  +      L NN I+ V P  L     L ++ L+
Sbjct: 191 --LASLPNLI-EVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 30/206 (14%), Positives = 60/206 (29%), Gaps = 14/206 (6%)

Query: 168 LKLENPNLSGL--LQNLAELRELYLDGANISA-PGIEWCQALSSL-------VPKLQVLS 217
           +     N++      +L  +  L   G  ++   G+++   L  L            + +
Sbjct: 24  IAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKN 83

Query: 218 LSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPE 277
           L+           L  + +++ ++  +   L+             S              
Sbjct: 84  LTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITN 143

Query: 278 KILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLD 337
                       LS  +     L      S L TL   +   S + P  + +L NL  + 
Sbjct: 144 ISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVH 201

Query: 338 LALCYFDGSIPTSLANLTQLVYLDLS 363
           L         P  LAN + L  + L+
Sbjct: 202 LKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 40/225 (17%), Positives = 78/225 (34%), Gaps = 19/225 (8%)

Query: 260 NLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNF 319
           N   +    S +  T  +  L    + TL   G  +   ++      ++L  L L +   
Sbjct: 20  NAIKIAAGKSNVTDTVTQADLD--GITTLSAFGTGV--TTIEGVQYLNNLIGLELKDNQI 75

Query: 320 SGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKN 379
                  +  LKNL+++       +     S     Q +      +  +  +  L    N
Sbjct: 76  -----TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 380 LTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKF 439
           L  L L  N +          +L  L   + +      S    L +L  L  L+  +NK 
Sbjct: 131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQV-----SDLTPLANLSKLTTLKADDNKI 185

Query: 440 GGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILS 484
             + P  ++  +  L  + L  N++    P++  +  NL I+ L+
Sbjct: 186 SDISP-LASLPN--LIEVHLKNNQISDVSPLA--NTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 33/227 (14%), Positives = 67/227 (29%), Gaps = 11/227 (4%)

Query: 92  IDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMT 151
           I+   P  +L     +    +  N T+  +    L  +T L+    G      +Q   + 
Sbjct: 9   INVIFPDPALANAIKIAAGKS--NVTDTVT-QADLDGITTLSAFGTGVTTIEGVQ--YLN 63

Query: 152 RLVTLDLSS--LNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQALSSL 209
            L+ L+L    +        L       L  N  +         +I    +   Q     
Sbjct: 64  NLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT 123

Query: 210 VPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHS 269
                            I          ++  L   +        LA+   LT+L+   +
Sbjct: 124 PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDN 183

Query: 270 RLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSN 316
           +++   P  +  +  L  + L  N +    +      S+L  + L+N
Sbjct: 184 KISDISP--LASLPNLIEVHLKNNQI--SDVSPLANTSNLFIVTLTN 226

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.1 bits (123), Expect = 2e-07
 Identities = 55/336 (16%), Positives = 95/336 (28%), Gaps = 31/336 (9%)

Query: 625 DYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKM 684
           + +N   +S +P+   +  S       S NS+T  +PE     K LLV + +   LS   
Sbjct: 44  ELNNLGLSS-LPELPPHLESL----VASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLP 97

Query: 685 PTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLV 744
           P           +  L     S  L +    N  L  L      L      +        
Sbjct: 98  PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPE 157

Query: 745 VLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFG 804
           + +L            L+ +  L + +    +    +       + P L  +   +N   
Sbjct: 158 LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK 217

Query: 805 GRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILS 864
                        +  +                   + +                    S
Sbjct: 218 TLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGL-----------------S 260

Query: 865 IFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHL 924
                 +  N     I        SL  LN+S N L   +P+    L   E L  S NHL
Sbjct: 261 ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRL---ERLIASFNHL 316

Query: 925 SGQIPIQLANLTFLSFLNLSHNNLVGKIPISTQLQS 960
           + ++P    NL     L++ +N L     I   ++ 
Sbjct: 317 A-EVPELPQNLK---QLHVEYNPLREFPDIPESVED 348

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.7 bits (114), Expect = 2e-06
 Identities = 57/331 (17%), Positives = 103/331 (31%), Gaps = 39/331 (11%)

Query: 285 LETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFD 344
              L+L+   L   SLP+ P +  L +L+ S  + +  LP+      +L  L +      
Sbjct: 40  AHELELNNLGL--SSLPELPPH--LESLVASCNSLT-ELPELPQ---SLKSLLVDNNNLK 91

Query: 345 GSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSN 404
                +L++L  L+      N  +  +P L  S  L  +D+  N+L              
Sbjct: 92  -----ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIA 146

Query: 405 LVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRL 464
                L       ++P           L+   +    L    +  +         +   L
Sbjct: 147 AGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFL 206

Query: 465 EGPIPMSIF-----------------DLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLE 507
                 +                   D     +  L  +     V       L  L    
Sbjct: 207 TTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNL 266

Query: 508 LSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWV 567
              N  +    S    P  +  L +++ KL  +P L    +L  L  S N ++ E+P   
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL--PPRLERLIASFNHLA-EVPELP 323

Query: 568 WEIGNVSLQYLNLSHNLLSSL-QRPFSISDL 597
                 +L+ L++ +N L      P S+ DL
Sbjct: 324 Q-----NLKQLHVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.4 bits (108), Expect = 1e-05
 Identities = 52/327 (15%), Positives = 94/327 (28%), Gaps = 26/327 (7%)

Query: 454 LDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELS---- 509
              ++L+   L   +P       +L+ L+ S N L    +L    +   +    L     
Sbjct: 40  AHELELNNLGLSS-LPELP---PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSD 95

Query: 510 -YNNLTVNAGSDSSFPSQVRTLRLASCKLRV-----IPNLKNQSKLFNLDLSDNQISGEI 563
               L     S++           +  K+       +  L +         + N    E+
Sbjct: 96  LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEEL 155

Query: 564 PNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVL 623
           P         ++   N S   L  L             + +L   Q    +        L
Sbjct: 156 PELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNL 215

Query: 624 VDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGK 683
           +    +   S    ++ +     L     + +   V          L       N  S +
Sbjct: 216 LKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNE 275

Query: 684 MPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCG-LHTLDLNGNQLGGTVPKSLANCRN 742
           + +        L  LN+  N L        P     L  L  + N L   VP+     +N
Sbjct: 276 IRSLCDLPPS-LEELNVSNNKLI-----ELPALPPRLERLIASFNHLA-EVPELP---QN 325

Query: 743 LVVLDLGNNKIRDTFPWWLENISSLRV 769
           L  L +  N +R  FP   E++  LR+
Sbjct: 326 LKQLHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.4 bits (108), Expect = 1e-05
 Identities = 53/326 (16%), Positives = 98/326 (30%), Gaps = 23/326 (7%)

Query: 260 NLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNF 319
               L L++  L+ + PE       LE+L  S NSL    LP+ P++     +  +N   
Sbjct: 39  QAHELELNNLGLS-SLPELPPH---LESLVASCNSL--TELPELPQSLKSLLVDNNNLKA 92

Query: 320 SGVLPDSI-----GNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSL 374
              LP  +      N +     +L    F   I     +L +L  L  S          L
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 375 HMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLR-----YNSLNGSIPGSLFSLPML 429
                L +L           S      L   +   +                 L ++   
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 430 QQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLN 489
             L          +   +   +   D  +L  +     +  +IF   +     L     +
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 490 GTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKL 549
                +      +L +L +S N L        + P ++  L  +   L  +P L     L
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLI----ELPALPPRLERLIASFNHLAEVPELP--QNL 326

Query: 550 FNLDLSDNQISGEIPNWVWEIGNVSL 575
             L +  N +  E P+    + ++ +
Sbjct: 327 KQLHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.7 bits (96), Expect = 3e-04
 Identities = 22/99 (22%), Positives = 32/99 (32%), Gaps = 12/99 (12%)

Query: 218 LSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPE 277
                 S  I        SL  + +  N L+       A    L  L  S + L    PE
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIE----LPALPPRLERLIASFNHLA-EVPE 321

Query: 278 KILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSN 316
                  L+ L +  N L     PD P   S+  L +++
Sbjct: 322 LP---QNLKQLHVEYNPLR--EFPDIP--ESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.7 bits (96), Expect = 3e-04
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 11/97 (11%)

Query: 459 LSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAG 518
              N     I        +L+ L +S+NKL     L        L +L  S+N+L     
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL-----PPRLERLIASFNHLA---- 317

Query: 519 SDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLS 555
                P  ++ L +    LR  P++     + +L ++
Sbjct: 318 EVPELPQNLKQLHVEYNPLREFPDIP--ESVEDLRMN 352

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.2 bits (114), Expect = 3e-07
 Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 7/126 (5%)

Query: 310 RTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVG 369
           R L L++ + +      +  L  ++ LDL+        P +LA L  L  L  + +  + 
Sbjct: 1   RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQ-ASDNALE 56

Query: 370 PIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNG--SIPGSLFS-L 426
            +  +     L  L L  N L  + +         LV ++L+ NSL     I   L   L
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

Query: 427 PMLQQL 432
           P +  +
Sbjct: 117 PSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.6 bits (110), Expect = 1e-06
 Identities = 23/110 (20%), Positives = 35/110 (31%), Gaps = 19/110 (17%)

Query: 528 RTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVW------------------- 568
           R L LA   L V+ +L+    + +LDLS N++    P                       
Sbjct: 1   RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 569 EIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPP 618
                 LQ L L +N L        +     + +L+L  N L        
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 110

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (104), Expect = 7e-06
 Identities = 23/111 (20%), Positives = 46/111 (41%), Gaps = 5/111 (4%)

Query: 479 KILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLR 538
           ++L L+   L     L  +++L  +  L+LS+N L     + ++    +  L+ +   L 
Sbjct: 1   RVLHLAHKDLTV---LCHLEQLLLVTHLDLSHNRLRALPPALAALRC-LEVLQASDNALE 56

Query: 539 VIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQ 589
            +  + N  +L  L L +N++          +    L  LNL  N L   +
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQ-SAAIQPLVSCPRLVLLNLQGNSLCQEE 106

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.9 bits (103), Expect = 7e-06
 Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 5/109 (4%)

Query: 576 QYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSI 635
           + L+L+H  L+ L     +  L  +T LDL  N+L+   P       L     +      
Sbjct: 1   RVLHLAHKDLTVLC---HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN 57

Query: 636 PDDIGNFVSFTLFFSLSNNSITGV-IPETLCRAKYLLVLDLSKNKLSGK 683
            D + N         L NN +      + L     L++L+L  N L  +
Sbjct: 58  VDGVANLPRLQ-ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 2e-05
 Identities = 22/123 (17%), Positives = 44/123 (35%), Gaps = 6/123 (4%)

Query: 409 DLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPI 468
            L +  L  ++   L  L ++  L L+ N+   L P  +           L  +      
Sbjct: 4   HLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRC----LEVLQASDNALEN 57

Query: 469 PMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVR 528
              + +L  L+ L+L +N+L  +  +  +     L  L L  N+L    G        + 
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 529 TLR 531
           ++ 
Sbjct: 118 SVS 120

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 29/126 (23%), Positives = 48/126 (38%), Gaps = 10/126 (7%)

Query: 650 SLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTL 709
            L++  +T  +   L +   +  LDLS N+L    P   +     L VL    N+L    
Sbjct: 4   HLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA--LAALRCLEVLQASDNALENVD 59

Query: 710 SVTFPGNCGLHTLDLNGNQL-GGTVPKSLANCRNLVVLDLGNNKI---RDTFPWWLENIS 765
            V          L L  N+L      + L +C  LV+L+L  N +           E + 
Sbjct: 60  GVANLPRL--QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 766 SLRVLV 771
           S+  ++
Sbjct: 118 SVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 25/117 (21%), Positives = 41/117 (35%), Gaps = 26/117 (22%)

Query: 869 IDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQL-------------- 914
           +  +  +    +   + +L  +  L+LS N L    P+ +  L+ L              
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVD 59

Query: 915 --------ESLDLSMNHLSGQIPIQ-LANLTFLSFLNLSHNNLVGKIPISTQLQSFL 962
                   + L L  N L     IQ L +   L  LNL  N+L  +  I  +L   L
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 25/128 (19%), Positives = 44/128 (34%), Gaps = 11/128 (8%)

Query: 214 QVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNG 273
           +VL L+   L+      L +L  ++ + L  N L +  P        L  L +  +  N 
Sbjct: 1   RVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALPPAL----AALRCLEVLQASDNA 54

Query: 274 TF-PEKILQVHTLETLDLSGNSLLQGSLPD-FPKNSSLRTLMLSN---TNFSGVLPDSIG 328
               + +  +  L+ L L  N L Q +          L  L L         G+      
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

Query: 329 NLKNLSRL 336
            L ++S +
Sbjct: 115 MLPSVSSI 122

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 48.7 bits (114), Expect = 2e-06
 Identities = 36/338 (10%), Positives = 79/338 (23%), Gaps = 29/338 (8%)

Query: 650 SLSNNSITGV----IPETLCRAKYLLVLDLSKNKLSGKMPTCL---IKMSEILGVLNLRG 702
           SL  ++IT      +   L     +  + LS N +  +    L   I   + L +     
Sbjct: 9   SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 703 NSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLE 762
                           L    L   +L        A         +              
Sbjct: 69  IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 128

Query: 763 NISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDE 822
           + + L        +                     +   N       K            
Sbjct: 129 HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 188

Query: 823 DEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPE 882
              +     +  E ++                      ++  +    +   +     +  
Sbjct: 189 HTVKMVQNGIRPEGIEHLLLEGL-----------AYCQELKVLDLQDNTFTHLGSSALAI 237

Query: 883 EIGRLKSLHGLNLSQNALTGPIPSAIGN------LQQLESLDLSMNHLSGQIPIQLA--- 933
            +    +L  L L+   L+    +A+ +         L++L L  N +       L    
Sbjct: 238 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 297

Query: 934 --NLTFLSFLNLSHNNLVGKIPISTQLQSFLATSFEGN 969
              +  L FL L+ N    +  +  +++   +T   G 
Sbjct: 298 DEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGE 335

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 48.7 bits (114), Expect = 2e-06
 Identities = 41/317 (12%), Positives = 90/317 (28%), Gaps = 17/317 (5%)

Query: 450 SSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLN--GTVQLA-AIQRLHNLAKL 506
              +L    ++    +  +   + +  ++K ++LS N +       L+  I    +L   
Sbjct: 6   EGKSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64

Query: 507 ELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNW 566
           E S                 +    L   KL  +    N       +   + +S   P  
Sbjct: 65  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 124

Query: 567 VWEIGNVSLQYLNLSHNLLSSLQRPF--SISDLSPITVLDLHSNQLQGNIPYPPPKAVLV 624
              + N  L     +    +  +        +  P+  +    N+L+        K    
Sbjct: 125 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 184

Query: 625 DYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKM 684
               ++            +   L   L+      V+        +L    L+       +
Sbjct: 185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA-----L 239

Query: 685 PTCLIKMSEILGVLNLRGNSLSGTLS-VTFPGNCGLHTLDLNGNQLGGTVPKSLA----- 738
            +        L    L     +  +   +   N GL TL L  N++     ++L      
Sbjct: 240 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE 299

Query: 739 NCRNLVVLDLGNNKIRD 755
              +L+ L+L  N+  +
Sbjct: 300 KMPDLLFLELNGNRFSE 316

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.4 bits (95), Expect = 4e-04
 Identities = 46/330 (13%), Positives = 89/330 (26%), Gaps = 45/330 (13%)

Query: 473 FDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRL 532
            + ++LK+  +++         A +    ++ ++ LS N +   A               
Sbjct: 5   IEGKSLKLDAITTEDEKSV--FAVLLEDDSVKEIVLSGNTIGTEAAR------------- 49

Query: 533 ASCKLRVIPNLKNQSKLFNLDLSDNQ---ISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQ 589
                 +  N+ ++  L   + SD     +  EIP  +  +    L+   L    LS   
Sbjct: 50  -----WLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 104

Query: 590 RPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFF 649
              +  +     +      +                 +      ++     N        
Sbjct: 105 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII 164

Query: 650 SLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEIL-----------GVL 698
              N    G + E     +   +L   K   +G  P  +  +                  
Sbjct: 165 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD 224

Query: 699 NLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANC------RNLVVLDLGNNK 752
           N   +  S  L++       L  L LN   L      ++ +         L  L L  N+
Sbjct: 225 NTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 284

Query: 753 IRDTFPWWL-----ENISSLRVLVLRSNSF 777
           I       L     E +  L  L L  N F
Sbjct: 285 IELDAVRTLKTVIDEKMPDLLFLELNGNRF 314

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.9 bits (91), Expect = 0.001
 Identities = 40/309 (12%), Positives = 80/309 (25%), Gaps = 30/309 (9%)

Query: 235 QSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNG----TFPEKILQVHTLETLDL 290
           +SL +  +   D    V   L +  ++  + LS + +         E I     LE  + 
Sbjct: 8   KSLKLDAITTEDE-KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 291 SGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTS 350
           S     +           L   +L       V               +        +   
Sbjct: 67  SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 126

Query: 351 LANLTQLVYLDLSFNKFVGPIPSLHMS----KNLTHLDLSYNALPGAISSTDWEHLSNLV 406
             +   L     +         +++        L  +    N L         +   +  
Sbjct: 127 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 186

Query: 407 YVDLRYNSLNGSIP-----------GSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALD 455
            +       NG  P                L +L          G      +  S   L 
Sbjct: 187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 246

Query: 456 TIDLSGNRLEGPIPMSIFD------LRNLKILILSSNKLNG----TVQLAAIQRLHNLAK 505
            + L+   L      ++ D         L+ L L  N++      T++    +++ +L  
Sbjct: 247 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 306

Query: 506 LELSYNNLT 514
           LEL+ N  +
Sbjct: 307 LELNGNRFS 315

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.5 bits (90), Expect = 0.002
 Identities = 38/319 (11%), Positives = 85/319 (26%), Gaps = 19/319 (5%)

Query: 284 TLETLDLSGNSLLQGSLPDFPK----NSSLRTLMLSNTNFSG----VLPDSIGNLKNLSR 335
           ++E   L  +++              + S++ ++LS           L ++I + K+L  
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 336 LDLALCY---FDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPG 392
            + +  +       IP +L  L Q +      +       +   +     +D      P 
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123

Query: 393 AISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSS 452
                    L       +       ++     + P L+ +    N+      +    +  
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183

Query: 453 ALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNN 512
           +   +        G  P  I  L    +      K+             +   + L    
Sbjct: 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 243

Query: 513 LTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEI-- 570
                G +    S      +         +      L  L L  N+I  +    +  +  
Sbjct: 244 NLRELGLNDCLLSARGAAAVVDA-----FSKLENIGLQTLRLQYNEIELDAVRTLKTVID 298

Query: 571 -GNVSLQYLNLSHNLLSSL 588
                L +L L+ N  S  
Sbjct: 299 EKMPDLLFLELNGNRFSEE 317

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.5 bits (109), Expect = 4e-06
 Identities = 27/199 (13%), Positives = 66/199 (33%), Gaps = 19/199 (9%)

Query: 722 LDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNI 781
            +L    +   V ++     ++  +   N+ I+      ++ + ++  L L  N      
Sbjct: 29  DNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIK 84

Query: 782 SCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIAD 841
                  +  K         N    +           +S E    S+   +       + 
Sbjct: 85  PL-----ANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESL 139

Query: 842 FYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALT 901
           +   + +T      ++ ++  L+   ++    N     +P  +  L  L  L LS+N ++
Sbjct: 140 YLGNNKIT------DITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191

Query: 902 GPIPSAIGNLQQLESLDLS 920
                A+  L+ L+ L+L 
Sbjct: 192 D--LRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.8 bits (102), Expect = 3e-05
 Identities = 37/211 (17%), Positives = 75/211 (35%), Gaps = 18/211 (8%)

Query: 540 IPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSP 599
           I +    ++    +L    ++  +          S+  +  +++ + S+     I  L  
Sbjct: 17  IFSDDAFAETIKDNLKKKSVTDAVTQNELN----SIDQIIANNSDIKSV---QGIQYLPN 69

Query: 600 ITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGV 659
           +T L L+ N+L    P     A L +        +   D+ +        SLS       
Sbjct: 70  VTKLFLNGNKLTDIKPL----ANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGIS 125

Query: 660 IPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGL 719
               L     L  L L  NK++       +   + L + + + + +         G   L
Sbjct: 126 DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-----LAGLTKL 180

Query: 720 HTLDLNGNQLGGTVPKSLANCRNLVVLDLGN 750
             L L+ N +  +  ++LA  +NL VL+L +
Sbjct: 181 QNLYLSKNHI--SDLRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 7e-05
 Identities = 35/209 (16%), Positives = 73/209 (34%), Gaps = 19/209 (9%)

Query: 736 SLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQI 795
           S       +  +L    + D        ++S+  ++  ++    +I   +     P +  
Sbjct: 19  SDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNS----DIKSVQGIQYLPNVTK 72

Query: 796 VDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGL 855
           + L  N      P   + +   +  DE++ +        + LK     +           
Sbjct: 73  LFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNG--------- 123

Query: 856 EMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLE 915
             ++  ++ +         N        + RL  L  L+L  N ++  +P  +  L +L+
Sbjct: 124 ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQ 181

Query: 916 SLDLSMNHLSGQIPIQLANLTFLSFLNLS 944
           +L LS NH+S  +   LA L  L  L L 
Sbjct: 182 NLYLSKNHISD-LR-ALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 37/211 (17%), Positives = 64/211 (30%), Gaps = 32/211 (15%)

Query: 317 TNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHM 376
           T    +  D         + +L       ++  +   L  +  +  + +     +  +  
Sbjct: 12  TPIKQIFSDD--AFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQGIQY 66

Query: 377 SKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAE 436
             N+T L L+ N L      TD + L+NL  +   +   N     S        +    E
Sbjct: 67  LPNVTKLFLNGNKL------TDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE 120

Query: 437 NKFGGLIPEF------------SNASSSALDTIDLSGNRLEGPIPMSIFD------LRNL 478
           +     I               +N  +       L+           I D      L  L
Sbjct: 121 HNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKL 180

Query: 479 KILILSSNKLNGTVQLAAIQRLHNLAKLELS 509
           + L LS N ++    L A+  L NL  LEL 
Sbjct: 181 QNLYLSKNHISD---LRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 887 LKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHN 946
                  NL + ++T  +      L  ++ +  + + +     IQ   L  ++ L L+ N
Sbjct: 23  FAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNGN 78

Query: 947 NLVGKIPIS 955
            L    P++
Sbjct: 79  KLTDIKPLA 87

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 33/205 (16%), Positives = 67/205 (32%), Gaps = 17/205 (8%)

Query: 257 DFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSN 316
            F       L    +     +   ++++++ +  + + +   S+       ++  L L+ 
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK--SVQGIQYLPNVTKLFLNG 77

Query: 317 TNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHM 376
              +      I  L NL  L       +     S     + +      +  +  I  L  
Sbjct: 78  NKLTD-----IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVH 132

Query: 377 SKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAE 436
              L  L L  N        T    L+ L  + L  N ++  +P  L  L  LQ L L++
Sbjct: 133 LPQLESLYLGNN---KITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187

Query: 437 NKFGGLIPEFSNASSSALDTIDLSG 461
           N     +   +   +  LD ++L  
Sbjct: 188 NHISD-LRALAGLKN--LDVLELFS 209

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 1e-05
 Identities = 24/135 (17%), Positives = 42/135 (31%), Gaps = 6/135 (4%)

Query: 350 SLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVD 409
              N  +   LDL   K                +D S N +        +  L  L  + 
Sbjct: 13  QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLL 69

Query: 410 LRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSG---NRLEG 466
           +  N +     G   +LP L +L L  N    L      AS  +L  + +        + 
Sbjct: 70  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 129

Query: 467 PIPMSIFDLRNLKIL 481
                I+ +  +++L
Sbjct: 130 YRLYVIYKVPQVRVL 144

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 5e-04
 Identities = 22/150 (14%), Positives = 46/150 (30%), Gaps = 6/150 (4%)

Query: 531 RLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQR 590
           +L +  +       N  +   LDL   +I   I N    +       ++ S N +  L  
Sbjct: 2   KLTAELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQ--FDAIDFSDNEIRKLDG 58

Query: 591 PFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFS 650
              +  L  + V +    ++   +    P    +  +NNS       D    +    +  
Sbjct: 59  FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 118

Query: 651 LSN---NSITGVIPETLCRAKYLLVLDLSK 677
           +      +        + +   + VLD  K
Sbjct: 119 ILRNPVTNKKHYRLYVIYKVPQVRVLDFQK 148

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 0.001
 Identities = 24/143 (16%), Positives = 51/143 (35%), Gaps = 10/143 (6%)

Query: 443 IPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHN 502
             +++NA       +DL G ++   I      L     +  S N++    +L     L  
Sbjct: 11  AAQYTNAVR--DRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR---KLDGFPLLRR 64

Query: 503 LAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKL---FNLDLSDNQI 559
           L  L ++ N +             +  L L +  L  + +L   + L     L +  N +
Sbjct: 65  LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 124

Query: 560 SGEIPNWVWEIGNV-SLQYLNLS 581
           + +    ++ I  V  ++ L+  
Sbjct: 125 TNKKHYRLYVIYKVPQVRVLDFQ 147

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.004
 Identities = 22/136 (16%), Positives = 50/136 (36%), Gaps = 6/136 (4%)

Query: 483 LSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPN 542
           L++  +    Q A         +L+L    + V     ++   Q   +  +  ++R +  
Sbjct: 3   LTAELIE---QAAQYTNAVRDRELDLRGYKIPVIENLGATLD-QFDAIDFSDNEIRKLDG 58

Query: 543 LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITV 602
                +L  L +++N+I          + ++    L L++N L  L     ++ L  +T 
Sbjct: 59  FPLLRRLKTLLVNNNRICRIGEGLDQALPDL--TELILTNNSLVELGDLDPLASLKSLTY 116

Query: 603 LDLHSNQLQGNIPYPP 618
           L +  N +     Y  
Sbjct: 117 LCILRNPVTNKKHYRL 132

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.4 bits (103), Expect = 2e-05
 Identities = 34/176 (19%), Positives = 58/176 (32%), Gaps = 7/176 (3%)

Query: 248 LSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHT-LETLDLSGNSLLQGSLPDFPKN 306
           L  +P  +    + T L L+ + L     + +      L  L+L  N L       F   
Sbjct: 20  LKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA 77

Query: 307 SSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNK 366
           S ++ L L       +       L  L  L+L        +P S  +L  L  L+L+ N 
Sbjct: 78  SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137

Query: 367 FVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGS 422
           F         ++ L    L+  A            + ++   DL ++    S   S
Sbjct: 138 FNCNCHLAWFAEWLRKKSLNGGAARCGA----PSKVRDVQIKDLPHSEFKCSSENS 189

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 23/171 (13%), Positives = 52/171 (30%), Gaps = 11/171 (6%)

Query: 346 SIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNL 405
            IP  +   T    L L+ N+           +    + L            +    ++ 
Sbjct: 22  EIPRDIPLHTT--ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 406 VYVDLRYNSLNGSIPGSLFS-LPMLQQLQLAENKFGGLIPE-FSNASSSALDTIDLSGNR 463
           +       +    I   +F  L  L+ L L +N+   ++P  F + +S       L+   
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS-------LTSLN 132

Query: 464 LEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLT 514
           L          L      +   +   G  +  A  ++ ++   +L ++   
Sbjct: 133 LASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFK 183

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 1e-04
 Identities = 33/202 (16%), Positives = 62/202 (30%), Gaps = 18/202 (8%)

Query: 738 ANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVD 797
                 +   LG   + DT      ++  +  L          I   +  +    L  ++
Sbjct: 15  TALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRL----GIKSIDGVEYLNNLTQIN 68

Query: 798 LASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEM 857
            ++N      P K +T    ++ + ++        +   L     +      +       
Sbjct: 69  FSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 128

Query: 858 ELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESL 917
            L ++     +I                       LN S N +T   P  + NL  LE L
Sbjct: 129 NLNRLELSSNTISDISALSGLTSL---------QQLNFSSNQVTDLKP--LANLTTLERL 177

Query: 918 DLSMNHLSGQIPI-QLANLTFL 938
           D+S N +S    + +L NL  L
Sbjct: 178 DISSNKVSDISVLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 6e-04
 Identities = 27/196 (13%), Positives = 55/196 (28%), Gaps = 19/196 (9%)

Query: 722 LDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNI 781
             L    +  TV  S  +   +  L      I+      +E +++L  +   +N      
Sbjct: 23  TVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT 78

Query: 782 SCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIAD 841
             +        L   +  ++                     D                ++
Sbjct: 79  PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN 138

Query: 842 FYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALT 901
                          +  +  L+    ++FS N      P  +  L +L  L++S N ++
Sbjct: 139 TISD-----------ISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVS 185

Query: 902 GPIPSAIGNLQQLESL 917
               S +  L  LESL
Sbjct: 186 D--ISVLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 34/205 (16%), Positives = 74/205 (36%), Gaps = 24/205 (11%)

Query: 316 NTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLH 375
           +T  + +  D+   L    +  L       ++  S  +L Q+  L          I  + 
Sbjct: 5   DTPINQIFTDT--ALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKS-IDGVE 59

Query: 376 MSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPM------- 428
              NLT ++ S N L       +   L +++  + +   +      +  +          
Sbjct: 60  YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT 119

Query: 429 -------LQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKIL 481
                  L  L   E     +    + +  ++L  ++ S N++    P  + +L  L+ L
Sbjct: 120 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERL 177

Query: 482 ILSSNKLNGTVQLAAIQRLHNLAKL 506
            +SSNK++    ++ + +L NL  L
Sbjct: 178 DISSNKVSD---ISVLAKLTNLESL 199

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 23/125 (18%), Positives = 44/125 (35%), Gaps = 4/125 (3%)

Query: 495 AAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLK-NQSKLFNLD 553
             + + ++ ++  L    L  +   D    +    L   S     +  ++ N  +L +L+
Sbjct: 14  LIMSKRYDGSQQALDLKGLRSD--PDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLN 71

Query: 554 LSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGN 613
           LS+N++              +L+ LNLS N L S +          +  L L  N L   
Sbjct: 72  LSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLSDT 130

Query: 614 IPYPP 618
                
Sbjct: 131 FRDQS 135

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 0.002
 Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 2/97 (2%)

Query: 872 SRNNFDGPIPEEIGRLKSLHGLNLSQNALTG--PIPSAIGNLQQLESLDLSMNHLSGQIP 929
            R++    +      +  L  LNLS N L     + S +     L+ L+LS N L  +  
Sbjct: 49  RRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE 108

Query: 930 IQLANLTFLSFLNLSHNNLVGKIPISTQLQSFLATSF 966
           +       L  L L  N+L       +   S +   F
Sbjct: 109 LDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERF 145

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 0.002
 Identities = 21/148 (14%), Positives = 42/148 (28%), Gaps = 15/148 (10%)

Query: 248 LSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKN- 306
           +  +   ++  ++ +   L    L       ++  +    L+   +     +L    +N 
Sbjct: 9   VEQLKLIMSKRYDGSQQALDLKGLR--SDPDLVAQNIDVVLNRRSSMA--ATLRIIEENI 64

Query: 307 SSLRTLMLSNTNFSGV--LPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSF 364
             L +L LSN     +  +   +    NL  L+L+                +L  L L  
Sbjct: 65  PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDG 124

Query: 365 NKFVGPIPS--------LHMSKNLTHLD 384
           N                      L  LD
Sbjct: 125 NSLSDTFRDQSTYISAIRERFPKLLRLD 152

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 24/112 (21%), Positives = 38/112 (33%), Gaps = 2/112 (1%)

Query: 867 TSIDFSRNNFDGPIPEEIGRLKSLHGLNLS-QNALTGPIPSAIGNLQQLESLDLSMNHLS 925
           + +  +R+         +   ++L  L +  Q  L       +  L +L +L +  + L 
Sbjct: 11  SGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69

Query: 926 GQIPIQLANLTFLSFLNLSHNNLVGKIPISTQLQSFLATSFEGNKGLCGPPL 977
              P        LS LNLS N L      + Q  S       GN   C   L
Sbjct: 70  FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCAL 121

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1044
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	100.0
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	100.0
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	100.0
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.98
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.97
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.95
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.93
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.92
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.92
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.91
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.9
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.89
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.89
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.88
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.87
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.87
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.86
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.82
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.81
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.71
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.67
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.65
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.56
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.55
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.54
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.67
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.57
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.14

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=0  Score=294.63  Aligned_cols=128  Identities=34%  Similarity=0.545  Sum_probs=87.5

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CCEEEECCC---CCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99088799999977029679887634477889999842--230675999---9869993999986676689987535887
Q 001612           29 QCQSDQQSLLLQMKSSLVFNSSLSFRMVQWSQSNDCCT--WSGVDCDEA---GRVIGLDLSEESISAGIDNSSPLFSLKY  103 (1044)
Q Consensus        29 ~~~~~~~~~ll~~k~~~~~~~~~~~~~~~W~~~~~~c~--w~gv~c~~~---~~v~~L~L~~~~l~~~~~~~~~l~~l~~  103 (1044)
                      -|.++||+||++||+++.++ .   .+++|..++|||.  |+||+|+..   +||++|+|++.++.|..+.++++.++++
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~-~---~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~   77 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNP-T---TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPY   77 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCC-G---GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTT
T ss_pred             CCCHHHHHHHHHHHHHCCCC-C---CCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCHHHHCCCC
T ss_conf             98989999999999977999-8---6778899999988948896974899947988998989988888879847846753


Q ss_pred             CCCCCCCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf             88001788-88999988986899999999986799998878801119999949956798
Q 001612          104 LQSLNLAF-NMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSL  161 (1044)
Q Consensus       104 L~~L~Ls~-n~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n  161 (1044)
                      |++|+|++ |.+.|. +|..++++++|++|++++|.+.+..+..+..+.+|++++++.|
T Consensus        78 L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N  135 (313)
T d1ogqa_          78 LNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN  135 (313)
T ss_dssp             CSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS
T ss_pred             CCCCCCCCCCCCCCC-CCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCC
T ss_conf             352020265433300-2431145420011020356434433222220111001111224

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=0  Score=255.14  Aligned_cols=258  Identities=30%  Similarity=0.501  Sum_probs=180.9

Q ss_pred             CEEEECCCCCCCC--CCCCCHHCCCCCCEEECCC-CCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             1578413785237--6740000458886898448-823335783576405643158789996767668887889875399
Q 001612          646 TLFFSLSNNSITG--VIPETLCRAKYLLVLDLSK-NKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTL  722 (1044)
Q Consensus       646 L~~L~L~~n~~~~--~~~~~l~~~~~L~~L~Ls~-N~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  722 (1044)
                      +..++++++.+++  .+|..+++++.|++|++++ |+++|.+|..+.+                         +++|++|
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~-------------------------L~~L~~L  106 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-------------------------LTQLHYL  106 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG-------------------------CTTCSEE
T ss_pred             EEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC-------------------------CCCCCHH
T ss_conf             889989899888888798478467533520202654333002431145-------------------------4200110


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC-CEEECCCC
Q ss_conf             68899785558601328999949977898155688933331779959983587134577899899999963-29985787
Q 001612          723 DLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKL-QIVDLASN  801 (1044)
Q Consensus       723 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L-~~L~ls~N  801 (1044)
                      +|++|++.+..+..+..+..|+.+++++|.+.+.+|.++.+++.++.+++++|.+.+.+  |..+..+..+ +.+++++|
T Consensus       107 ~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~i--p~~~~~l~~l~~~l~~~~n  184 (313)
T d1ogqa_         107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI--PDSYGSFSKLFTSMTISRN  184 (313)
T ss_dssp             EEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEEC--CGGGGCCCTTCCEEECCSS
T ss_pred             HHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCC--CCCCCCCCCCCCCCCCCCC
T ss_conf             20356434433222220111001111224555568512206740000002355335620--3121443112323102246


Q ss_pred             CCCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCEEEECCCCCCCCCCC
Q ss_conf             37775795667543210244011103665422000123442212216986448345576613753199934781211488
Q 001612          802 NFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIP  881 (1044)
Q Consensus       802 ~~~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip  881 (1044)
                      +++|..|....                                                  ......++++++.+.+.+|
T Consensus       185 ~l~~~~~~~~~--------------------------------------------------~l~~~~l~l~~~~~~~~~~  214 (313)
T d1ogqa_         185 RLTGKIPPTFA--------------------------------------------------NLNLAFVDLSRNMLEGDAS  214 (313)
T ss_dssp             EEEEECCGGGG--------------------------------------------------GCCCSEEECCSSEEEECCG
T ss_pred             CCCCCCCCCCC--------------------------------------------------CCCCCCCCCCCCCCCCCCC
T ss_conf             43533243322--------------------------------------------------2222233333343322222


Q ss_pred             CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             35478789988968799886777600118689997867897064455702527777857977578153469976211343
Q 001612          882 EEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLVGKIPISTQLQSF  961 (1044)
Q Consensus       882 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~g~ip~~~~~~~~  961 (1044)
                      ..++.++.++.+++++|.+++.+| .++.++.++.|++++|+++|.+|..+.++++|++|++++|+++|.||....+..+
T Consensus       215 ~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L  293 (313)
T d1ogqa_         215 VLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRF  293 (313)
T ss_dssp             GGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGS
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCC
T ss_conf             222222221112222222222222-2224554444447657066608768847999998979588351668986667998


Q ss_pred             CCCCCCCCCCCCCCCCCCCC
Q ss_conf             32344688899899988889
Q 001612          962 LATSFEGNKGLCGPPLNVCR  981 (1044)
Q Consensus       962 ~~~~~~~n~~lc~~~~~~c~  981 (1044)
                      ....+.||+.+||.|++.|.
T Consensus       294 ~~l~l~~N~~l~g~plp~c~  313 (313)
T d1ogqa_         294 DVSAYANNKCLCGSPLPACT  313 (313)
T ss_dssp             CGGGTCSSSEEESTTSSCCC
T ss_pred             CHHHHCCCCCCCCCCCCCCC
T ss_conf             97886889500198988989

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=100.00  E-value=1.3e-37  Score=207.74  Aligned_cols=78  Identities=28%  Similarity=0.426  Sum_probs=54.0

Q ss_pred             CCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             37531999347812114883547878998896879988677760011868999786789706445570252777785797
Q 001612          863 LSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLN  942 (1044)
Q Consensus       863 ~~~L~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~  942 (1044)
                      ++.++.+++++|++++..|  +..+++|+.|++++|++++ +| .++++++|+.|++++|++++.+|  +.++++|+.|+
T Consensus       306 ~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~  379 (384)
T d2omza2         306 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLG  379 (384)
T ss_dssp             CTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEE
T ss_pred             HCCCCEEECCCCCCCCCCC--CCCCCCCCEEECCCCCCCC-CH-HHCCCCCCCEEECCCCCCCCCHH--HCCCCCCCEEE
T ss_conf             0246767777887789845--3668988989898998999-74-67089999989897995899800--00399999963


Q ss_pred             CCCC
Q ss_conf             7578
Q 001612          943 LSHN  946 (1044)
Q Consensus       943 l~~N  946 (1044)
                      +++|
T Consensus       380 L~~N  383 (384)
T d2omza2         380 LNDQ  383 (384)
T ss_dssp             CCCE
T ss_pred             CCCC
T ss_conf             9789

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=100.00  E-value=1.8e-37  Score=207.05  Aligned_cols=57  Identities=19%  Similarity=0.404  Sum_probs=31.5

Q ss_pred             CCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf             3753199934781211488354787899889687998867776001186899978678970
Q 001612          863 LSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNH  923 (1044)
Q Consensus       863 ~~~L~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~ls~N~  923 (1044)
                      ++.|+.|++++|++++ +| .+.++++|+.|++++|++++.+|  +.++++|+.|++++|.
T Consensus       328 l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         328 LTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA  384 (384)
T ss_dssp             CTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCEE
T ss_pred             CCCCCEEECCCCCCCC-CH-HHCCCCCCCEEECCCCCCCCCHH--HCCCCCCCEEECCCCC
T ss_conf             8988989898998999-74-67089999989897995899800--0039999996397895

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.4e-33  Score=183.72  Aligned_cols=252  Identities=19%  Similarity=0.185  Sum_probs=144.5

Q ss_pred             CCCEEEECCCCCCCCCCCCCHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             34157841378523767400004588868984488233357835764056431587899967676688878898753996
Q 001612          644 SFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLD  723 (1044)
Q Consensus       644 ~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  723 (1044)
                      +.+++|++++|+++...+..|.+++.|+.|++++|++....|..+..+ +.|+.|++++|+++.+....+   ..+..|+
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l-~~L~~L~l~~n~l~~l~~~~~---~~l~~L~  106 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL-VKLERLYLSKNQLKELPEKMP---KTLQELR  106 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTC-TTCCEEECCSSCCSBCCSSCC---TTCCEEE
T ss_pred             CCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCC-CCCCEECCCCCCCCCCCCCHH---HHHHHHH
T ss_conf             997989784991898696576046565231123443445235665279-855783156875676764001---1132321


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEECCCCCCC--CCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf             8899785558601328999949977898155--68893333177995998358713457789989999996329985787
Q 001612          724 LNGNQLGGTVPKSLANCRNLVVLDLGNNKIR--DTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASN  801 (1044)
Q Consensus       724 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N  801 (1044)
                      +.+|.+.+..+..+.....+..++...|...  ...+..+..+++|+.+++++|.+...   +.  ...++++.+++++|
T Consensus       107 ~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l---~~--~~~~~L~~L~l~~n  181 (305)
T d1xkua_         107 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI---PQ--GLPPSLTELHLDGN  181 (305)
T ss_dssp             CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC---CS--SCCTTCSEEECTTS
T ss_pred             CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CC--CCCCCCCEEECCCC
T ss_conf             02461023444454013311000012333334677764223456567120346774516---71--01776678989788


Q ss_pred             CCCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCEEEECCCCCCCCCCC
Q ss_conf             37775795667543210244011103665422000123442212216986448345576613753199934781211488
Q 001612          802 NFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIP  881 (1044)
Q Consensus       802 ~~~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip  881 (1044)
                      ...+..+...                                                 ..++.++.|++++|.+.+..|
T Consensus       182 ~~~~~~~~~~-------------------------------------------------~~~~~l~~L~~s~n~l~~~~~  212 (305)
T d1xkua_         182 KITKVDAASL-------------------------------------------------KGLNNLAKLGLSFNSISAVDN  212 (305)
T ss_dssp             CCCEECTGGG-------------------------------------------------TTCTTCCEEECCSSCCCEECT
T ss_pred             CCCCCCHHHH-------------------------------------------------HCCCCCCCCCCCCCCCCCCCC
T ss_conf             6778882676-------------------------------------------------413413301544553322234


Q ss_pred             CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC------CCCCCCCCEEECCCCCCC-CCCCC
Q ss_conf             35478789988968799886777600118689997867897064455702------527777857977578153-46997
Q 001612          882 EEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQ------LANLTFLSFLNLSHNNLV-GKIPI  954 (1044)
Q Consensus       882 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~------~~~l~~L~~l~l~~N~l~-g~ip~  954 (1044)
                      ..+.++++|++|+|++|.++ .+|.++..+++|+.|++++|+++...+..      ...+.+|+.+++++|++. ..++.
T Consensus       213 ~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~  291 (305)
T d1xkua_         213 GSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP  291 (305)
T ss_dssp             TTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG
T ss_pred             CCCCCCCCCEEEECCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCHHHCCCCCHHCCCCCCCEEECCCCCCCCCCCCH
T ss_conf             54334433224302554002-46311033467898989898657638100267210021588897889899576676897

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-34  Score=192.16  Aligned_cols=228  Identities=23%  Similarity=0.210  Sum_probs=162.8

Q ss_pred             EECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC-CC
Q ss_conf             98448823335783576405643158789996767668887889875399688997855586013289999499778-98
Q 001612          673 LDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLG-NN  751 (1044)
Q Consensus       673 L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls-~N  751 (1044)
                      ++.+++.++ .+|..+   ++++++|+|++|+++.+.+..|.++++|++|++++|.+.+..+..+..+..+..++.. .|
T Consensus        16 v~c~~~~L~-~iP~~i---p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             EECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EECCCCCCC-CCCCCC---CCCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             984799989-449788---9998889774881798797786414213000013445433211121222222222222102


Q ss_pred             CCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCHHHHCCCCCC
Q ss_conf             15568893333177995998358713457789989999996329985787377757956675432102440111036654
Q 001612          752 KIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKD  831 (1044)
Q Consensus       752 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~g~ip~~~~~~~~~~~~~~~~~~~~~~~  831 (1044)
                      .++...+..+.++++|+.|++++|.+....  +......++|+.+++++|.+++..+ ..+                   
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~~L~~l~l~~N~l~~i~~-~~f-------------------  149 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCGLQELG--PGLFRGLAALQYLYLQDNALQALPD-DTF-------------------  149 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCT-TTT-------------------
T ss_pred             CCCCCCCHHHCCCCCCCEEECCCCCCCCCC--CCCCCHHCCCCHHHHCCCCCCCCCH-HHH-------------------
T ss_conf             235446201010102778756885443201--3533200012110200143144580-574-------------------


Q ss_pred             CCCCCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf             22000123442212216986448345576613753199934781211488354787899889687998867776001186
Q 001612          832 VHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNL  911 (1044)
Q Consensus       832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l  911 (1044)
                                                   ...+.++.|++++|++++..|..|.+++.|+.+++++|.+++..|..|.++
T Consensus       150 -----------------------------~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l  200 (284)
T d1ozna_         150 -----------------------------RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL  200 (284)
T ss_dssp             -----------------------------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             -----------------------------CCCCCHHHCCCCCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHH
T ss_conf             -----------------------------043405022314176566256665465634131421143466281676653


Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf             89997867897064455702527777857977578153469976
Q 001612          912 QQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLVGKIPIS  955 (1044)
Q Consensus       912 ~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~g~ip~~  955 (1044)
                      ++|+.||+++|.+++..|..+..+++|+++++++|++.|.++..
T Consensus       201 ~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~  244 (284)
T d1ozna_         201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR  244 (284)
T ss_dssp             TTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCH
T ss_conf             20002333335221000002355465688981199887875646

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-32  Score=179.63  Aligned_cols=210  Identities=20%  Similarity=0.214  Sum_probs=106.9

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCEEECC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEEC
Q ss_conf             43158789996767668887889875399688-99785558601328999949977898155688933331779959983
Q 001612          694 ILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLN-GNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVL  772 (1044)
Q Consensus       694 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  772 (1044)
                      .|+.|++++|.+..+.+..+.+...+..++.. .+.+....+..|.++++|+.|++++|.+....+..+...++|+.+++
T Consensus        57 ~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l  136 (284)
T d1ozna_          57 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYL  136 (284)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCHHCCCCHHHH
T ss_conf             13000013445433211121222222222222102235446201010102778756885443201353320001211020


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf             58713457789989999996329985787377757956675432102440111036654220001234422122169864
Q 001612          773 RSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTS  852 (1044)
Q Consensus       773 ~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  852 (1044)
                      ++|.+++..  +..+..+++|+.|++++|++.+..+ ..|                                        
T Consensus       137 ~~N~l~~i~--~~~f~~~~~L~~L~l~~N~l~~l~~-~~f----------------------------------------  173 (284)
T d1ozna_         137 QDNALQALP--DDTFRDLGNLTHLFLHGNRISSVPE-RAF----------------------------------------  173 (284)
T ss_dssp             CSSCCCCCC--TTTTTTCTTCCEEECCSSCCCEECT-TTT----------------------------------------
T ss_pred             CCCCCCCCC--HHHHCCCCCHHHCCCCCCCCCCCCH-HHH----------------------------------------
T ss_conf             014314458--0574043405022314176566256-665----------------------------------------


Q ss_pred             CCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf             48345576613753199934781211488354787899889687998867776001186899978678970644557025
Q 001612          853 KGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQL  932 (1044)
Q Consensus       853 ~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~~  932 (1044)
                              ..++.++.+++++|++++..|..|..+++|+.|++++|.+++..|..|+.+++|+.|++++|.+.+.-+. .
T Consensus       174 --------~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~-~  244 (284)
T d1ozna_         174 --------RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-R  244 (284)
T ss_dssp             --------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-H
T ss_pred             --------CCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC-H
T ss_conf             --------4656341314211434662816766532000233333522100000235546568898119988787564-6


Q ss_pred             CCCCCCCEEECCCCCCCCCCCCC
Q ss_conf             27777857977578153469976
Q 001612          933 ANLTFLSFLNLSHNNLVGKIPIS  955 (1044)
Q Consensus       933 ~~l~~L~~l~l~~N~l~g~ip~~  955 (1044)
                      .....++.+....+++.+..|..
T Consensus       245 ~l~~~l~~~~~~~~~~~C~~p~~  267 (284)
T d1ozna_         245 PLWAWLQKFRGSSSEVPCSLPQR  267 (284)
T ss_dssp             HHHHHHHHCCSEECCCBEEESGG
T ss_pred             HHHHHHHHCCCCCCCEEECCCHH
T ss_conf             99999986738888667479669

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=6.8e-31  Score=172.84  Aligned_cols=203  Identities=22%  Similarity=0.226  Sum_probs=130.4

Q ss_pred             CCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             88868984488233357835764056431587899967676688878898753996889978555860132899994997
Q 001612          668 KYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLD  747 (1044)
Q Consensus       668 ~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  747 (1044)
                      ..+.+++.+++.++ .+|..+.   ++++.|+|++|.++++.+..|.++++|++|+|++|+++.. | .+..+++|+.|+
T Consensus        10 ~~~~~v~C~~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~   83 (266)
T d1p9ag_          10 ASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLD   83 (266)
T ss_dssp             TTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEE
T ss_pred             CCCEEEECCCCCCC-EECCCCC---CCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCC-C-CCCCCCCCCCCC
T ss_conf             89869980699988-6196757---6889898849928985977863456552213566544443-1-111122321111


Q ss_pred             CCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCHHHHCC
Q ss_conf             78981556889333317799599835871345778998999999632998578737775795667543210244011103
Q 001612          748 LGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQS  827 (1044)
Q Consensus       748 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~g~ip~~~~~~~~~~~~~~~~~~~  827 (1044)
                      +++|++++. +..+.++++|+.|++++|                          .+.+..+..                 
T Consensus        84 Ls~N~l~~~-~~~~~~l~~L~~L~l~~~--------------------------~~~~~~~~~-----------------  119 (266)
T d1p9ag_          84 LSHNQLQSL-PLLGQTLPALTVLDVSFN--------------------------RLTSLPLGA-----------------  119 (266)
T ss_dssp             CCSSCCSSC-CCCTTTCTTCCEEECCSS--------------------------CCCCCCSST-----------------
T ss_pred             CCCCCCCCC-CCCCCCCCCCCCCCCCCC--------------------------CCCEEECCC-----------------
T ss_conf             122222111-112122222222222223--------------------------110110011-----------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf             66542200012344221221698644834557661375319993478121148835478789988968799886777600
Q 001612          828 NFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSA  907 (1044)
Q Consensus       828 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~  907 (1044)
                                                      ...+..+..+++++|.+.+..+..+..++.++.+++++|++++..+..
T Consensus       120 --------------------------------~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~  167 (266)
T d1p9ag_         120 --------------------------------LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL  167 (266)
T ss_dssp             --------------------------------TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTT
T ss_pred             --------------------------------CCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHCCCCCCCCCCCCCCC
T ss_conf             --------------------------------222211112212434210221233322111000000015652237200


Q ss_pred             CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf             1186899978678970644557025277778579775781534699
Q 001612          908 IGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLVGKIP  953 (1044)
Q Consensus       908 ~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~g~ip  953 (1044)
                      |..+++|+.|||++|+++ .+|..+..+++|+.+++++|++.+.+.
T Consensus       168 ~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~  212 (266)
T d1p9ag_         168 LNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (266)
T ss_dssp             TTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             CCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCEEEECCCCCCCCCC
T ss_conf             134212423430139785-568667778889999836999878864

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.4e-28  Score=160.86  Aligned_cols=178  Identities=24%  Similarity=0.150  Sum_probs=106.7

Q ss_pred             CCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf             88689844882333578357640564315878999676766888788987539968899785558601328999949977
Q 001612          669 YLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDL  748 (1044)
Q Consensus       669 ~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L  748 (1044)
                      .++.|++++|++++..+..+.++ ++|+.|++++|.++.+.  .+..+++|++|++++|+++. .+..+..+++|+.|++
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l-~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l  107 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPY-TRLTQLNLDRAELTKLQ--VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDV  107 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTC-TTCCEEECTTSCCCEEE--CCSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEEC
T ss_pred             CCCEEECCCCCCCCCCHHHHHCC-CCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCC
T ss_conf             88989884992898597786345-65522135665444431--11112232111112222211-1112122222222222


Q ss_pred             CCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCHHHHCCC
Q ss_conf             89815568893333177995998358713457789989999996329985787377757956675432102440111036
Q 001612          749 GNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSN  828 (1044)
Q Consensus       749 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~g~ip~~~~~~~~~~~~~~~~~~~~  828 (1044)
                      ++|++....+..+..+.+++.|++++|.+....  +..+.                                        
T Consensus       108 ~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~--~~~~~----------------------------------------  145 (266)
T d1p9ag_         108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLP--PGLLT----------------------------------------  145 (266)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC--TTTTT----------------------------------------
T ss_pred             CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEC--CCCCC----------------------------------------
T ss_conf             223110110011222211112212434210221--23332----------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf             65422000123442212216986448345576613753199934781211488354787899889687998867776001
Q 001612          829 FKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAI  908 (1044)
Q Consensus       829 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~  908 (1044)
                                                       .++.++.+++++|++++..+..|..+++|+.|+|++|+++ .+|..+
T Consensus       146 ---------------------------------~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~  191 (266)
T d1p9ag_         146 ---------------------------------PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF  191 (266)
T ss_dssp             ---------------------------------TCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT
T ss_pred             ---------------------------------CCCCCHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCHHH
T ss_conf             ---------------------------------2111000000015652237200134212423430139785-568667


Q ss_pred             CCCCCCCEEECCCCCCCC
Q ss_conf             186899978678970644
Q 001612          909 GNLQQLESLDLSMNHLSG  926 (1044)
Q Consensus       909 ~~l~~L~~L~ls~N~l~~  926 (1044)
                      ..+++|+.|+|++|.+..
T Consensus       192 ~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         192 FGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             TTTCCCSEEECCSCCBCC
T ss_pred             CCCCCCCEEEECCCCCCC
T ss_conf             778889999836999878

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.95  E-value=4.9e-24  Score=137.23  Aligned_cols=299  Identities=23%  Similarity=0.264  Sum_probs=0.0

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCEEEECCC
Q ss_conf             56355224443347668765588998745776787465789999999719974378687689801330023415784137
Q 001612          574 SLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSN  653 (1044)
Q Consensus       574 ~L~~L~Ls~n~l~~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~ls~n~~~~~~~~~~~~~~~~L~~L~L~~  653 (1044)
                      +++.|+++++.++.++...     ++|++|++++|+++ .+|..+.+++.+++++|+++     .+....+.+++|++++
T Consensus        39 ~l~~LdLs~~~L~~lp~~~-----~~L~~L~Ls~N~l~-~lp~~~~~L~~L~l~~n~l~-----~l~~lp~~L~~L~L~~  107 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPELP-----PHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLK-----ALSDLPPLLEYLGVSN  107 (353)
T ss_dssp             TCSEEECTTSCCSCCCSCC-----TTCSEEECCSSCCS-SCCCCCTTCCEEECCSSCCS-----CCCSCCTTCCEEECCS
T ss_pred             CCCEEEECCCCCCCCCCCC-----CCCCEEECCCCCCC-CCCCCHHHHHHHHHHHCCCC-----HHHHHCCCCCCCCCCC
T ss_conf             9989993799988788987-----89888989999796-33620332033266551432-----0321022111113345


Q ss_pred             CCCCCCCCCCHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf             85237674000045888689844882333578357640564315878999676766888788987539968899785558
Q 001612          654 NSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTV  733 (1044)
Q Consensus       654 n~~~~~~~~~l~~~~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  733 (1044)
                      |.+.....  +..++.|+.+++++|.+. ..+...    ..+..+.+.++....  ...+..++.++.+++++|......
T Consensus       108 n~l~~lp~--~~~l~~L~~L~l~~~~~~-~~~~~~----~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~~~~~~  178 (353)
T d1jl5a_         108 NQLEKLPE--LQNSSFLKIIDVDNNSLK-KLPDLP----PSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSLKKLP  178 (353)
T ss_dssp             SCCSSCCC--CTTCTTCCEEECCSSCCS-CCCCCC----TTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCSSCC
T ss_pred             CCCCCCCC--HHHHCCCEEECCCCCCCC-CCCCCC----CCCCCHHHCCCCCCC--CCCCCCCCCCEECCCCCCCCCCCC
T ss_conf             54322210--011013123113565100-132233----332100001222223--332000122200111233443222


Q ss_pred             CCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHH
Q ss_conf             60132899994997789815568893333177995998358713457789989999996329985787377757956675
Q 001612          734 PKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCIT  813 (1044)
Q Consensus       734 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~g~ip~~~~~  813 (1044)
                      ...    ...+.+...++.+.....  +..++.++.+.+++|..      .........+..+++.++.+.....     
T Consensus       179 ~~~----~~~~~l~~~~~~~~~~~~--~~~l~~L~~l~l~~n~~------~~~~~~~~~l~~~~~~~~~~~~~~~-----  241 (353)
T d1jl5a_         179 DLP----LSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLL------KTLPDLPPSLEALNVRDNYLTDLPE-----  241 (353)
T ss_dssp             CCC----TTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCC------SSCCSCCTTCCEEECCSSCCSCCCC-----
T ss_pred             CCC----CCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCC-----
T ss_conf             212----222223344432222122--34555333122254222------3455323343332223333344433-----


Q ss_pred             HHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCEEEECCCCCCCC---------------
Q ss_conf             43210244011103665422000123442212216986448345576613753199934781211---------------
Q 001612          814 SWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDG---------------  878 (1044)
Q Consensus       814 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~---------------  878 (1044)
                                                                      ....++..++..+.+.+               
T Consensus       242 ------------------------------------------------~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~  273 (353)
T d1jl5a_         242 ------------------------------------------------LPQSLTFLDVSENIFSGLSELPPNLYYLNASS  273 (353)
T ss_dssp             ------------------------------------------------CCTTCCEEECCSSCCSEESCCCTTCCEEECCS
T ss_pred             ------------------------------------------------CCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCC
T ss_conf             ------------------------------------------------34432222222233322234530001233335


Q ss_pred             -CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf             -4883547878998896879988677760011868999786789706445570252777785797757815346997621
Q 001612          879 -PIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLVGKIPISTQ  957 (1044)
Q Consensus       879 -~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~g~ip~~~~  957 (1044)
                       .++.....+++|++|+|++|+++ .+|   ..+++|+.|++++|+++ .+|..   +++|+.|++++|+++........
T Consensus       274 ~~~~~~~~~~~~L~~L~Ls~N~l~-~lp---~~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~~lp~~~~~  345 (353)
T d1jl5a_         274 NEIRSLCDLPPSLEELNVSNNKLI-ELP---ALPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLREFPDIPES  345 (353)
T ss_dssp             SCCSEECCCCTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSSCCCCCTT
T ss_pred             CCCCCCCCCCCCCCEEECCCCCCC-CCC---CCCCCCCEEECCCCCCC-CCCCC---CCCCCEEECCCCCCCCCCCCCCC
T ss_conf             753234566898898979799168-356---65487998989999687-54532---28889898769918977765265


Q ss_pred             CCCCCCCC
Q ss_conf             13433234
Q 001612          958 LQSFLATS  965 (1044)
Q Consensus       958 ~~~~~~~~  965 (1044)
                      +..+...+
T Consensus       346 L~~L~~~~  353 (353)
T d1jl5a_         346 VEDLRMNS  353 (353)
T ss_dssp             CCEEECCC
T ss_pred             CCEEECCC
T ss_conf             67128969

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=7.3e-28  Score=157.11  Aligned_cols=13  Identities=46%  Similarity=0.572  Sum_probs=4.3

Q ss_pred             CCCCEEECCCCCC
Q ss_conf             9994997789815
Q 001612          741 RNLVVLDLGNNKI  753 (1044)
Q Consensus       741 ~~L~~L~Ls~N~l  753 (1044)
                      ++|+.|++++|++
T Consensus       397 ~~L~~L~Ls~N~i  409 (460)
T d1z7xw1         397 HSLRELDLSNNCL  409 (460)
T ss_dssp             CCCCEEECCSSSC
T ss_pred             CCCCEEECCCCCC
T ss_conf             9889898999969

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.92  E-value=5.9e-24  Score=136.79  Aligned_cols=185  Identities=21%  Similarity=0.283  Sum_probs=105.5

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECC
Q ss_conf             43158789996767668887889875399688997855586013289999499778981556889333317799599835
Q 001612          694 ILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLR  773 (1044)
Q Consensus       694 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~  773 (1044)
                      +|+.|++.+|.++..  ..+..+++|++|++++|.+++..|  +..++.++.+++++|.++..  ..+.++++|+.+.++
T Consensus        42 ~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~l~l~  115 (227)
T d1h6ua2          42 GITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLT  115 (227)
T ss_dssp             TCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECT
T ss_pred             CCCEEECCCCCCCCC--HHHHCCCCCCEEECCCCEEECCCC--CCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCC
T ss_conf             868997779999766--457448888376357853202543--11233432012111222222--222222222122122


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf             87134577899899999963299857873777579566754321024401110366542200012344221221698644
Q 001612          774 SNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSK  853 (1044)
Q Consensus       774 ~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  853 (1044)
                      ++...+.    ..+...+.++.+.++.+.+....+                                             
T Consensus       116 ~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~---------------------------------------------  146 (227)
T d1h6ua2         116 STQITDV----TPLAGLSNLQVLYLDLNQITNISP---------------------------------------------  146 (227)
T ss_dssp             TSCCCCC----GGGTTCTTCCEEECCSSCCCCCGG---------------------------------------------
T ss_pred             CCCCCCC----CHHCCCCCHHHHHCHHHHHCHHHH---------------------------------------------
T ss_conf             2443311----000002301222000000000000---------------------------------------------


Q ss_pred             CCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf             83455766137531999347812114883547878998896879988677760011868999786789706445570252
Q 001612          854 GLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLA  933 (1044)
Q Consensus       854 ~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~~~  933 (1044)
                            ....+.++.+++++|.+.+..  .++++++|+.|+|++|++++ +|. ++++++|+.|++++|++++..|  ++
T Consensus       147 ------~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N~lt~i~~--l~  214 (227)
T d1h6ua2         147 ------LAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISDVSP--LA  214 (227)
T ss_dssp             ------GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCBCGG--GT
T ss_pred             ------HCCCCCCCCCCCCCCCCCCCH--HHCCCCCCEECCCCCCCCCC-CHH-HCCCCCCCEEECCCCCCCCCCC--CC
T ss_conf             ------010211100233333333100--10564633564458884177-853-4479999989795996899802--03


Q ss_pred             CCCCCCEEECCC
Q ss_conf             777785797757
Q 001612          934 NLTFLSFLNLSH  945 (1044)
Q Consensus       934 ~l~~L~~l~l~~  945 (1044)
                      +++.|+.|++++
T Consensus       215 ~l~~L~~L~lsn  226 (227)
T d1h6ua2         215 NTSNLFIVTLTN  226 (227)
T ss_dssp             TCTTCCEEEEEE
T ss_pred             CCCCCCEEEEEC
T ss_conf             699989897129

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2e-24  Score=139.24  Aligned_cols=221  Identities=14%  Similarity=0.084  Sum_probs=137.4

Q ss_pred             CEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEEECC
Q ss_conf             689844882333578357640564315878999676766888788987539968899785558-6013289999499778
Q 001612          671 LVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTV-PKSLANCRNLVVLDLG  749 (1044)
Q Consensus       671 ~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls  749 (1044)
                      +.++.++..++ .+|..+.   ++++.|++++|+++.+.+..|.++++|++|++++|.+...+ +..|..++.++.+++.
T Consensus        11 ~~i~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEECCCCC-CCCCCCC---CCCCEEECCCCCCCCCCHHHHHCCCHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCC
T ss_conf             99998189988-7688889---9889998769918964966861464323211022112420100112222222221111


Q ss_pred             -CCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCHHHHCCC
Q ss_conf             -9815568893333177995998358713457789989999996329985787377757956675432102440111036
Q 001612          750 -NNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSN  828 (1044)
Q Consensus       750 -~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~g~ip~~~~~~~~~~~~~~~~~~~~  828 (1044)
                       .|.+....+.++.++++|+.+++++|.+.... .......++.+.....+++.+.. ++...+.               
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~-~~~~~~~l~~l~~~~~~n~~l~~-i~~~~~~---------------  149 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLP-DVHKIHSLQKVLLDIQDNINIHT-IERNSFV---------------  149 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCC-CCTTTCBSSCEEEEEESCTTCCE-ECTTSST---------------
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCC-CCCCCCC---------------
T ss_conf             123432222221222222222234211112554-33322211112222222121112-2222222---------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCEE-ECCCCCCCCCCCCC
Q ss_conf             65422000123442212216986448345576613753199934781211488354787899889-68799886777600
Q 001612          829 FKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGL-NLSQNALTGPIPSA  907 (1044)
Q Consensus       829 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~~~~l~~L~~L-~Ls~N~l~g~ip~~  907 (1044)
                                                      .....+..+++++|+++...+..+. ...++.+ ++++|.++...+..
T Consensus       150 --------------------------------~~~~~l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~  196 (242)
T d1xwdc1         150 --------------------------------GLSFESVILWLNKNGIQEIHNCAFN-GTQLDELNLSDNNNLEELPNDV  196 (242)
T ss_dssp             --------------------------------TSBSSCEEEECCSSCCCEECTTTTT-TCCEEEEECTTCTTCCCCCTTT
T ss_pred             --------------------------------CCCCCCEEEECCCCCCCCCCCCCCC-CHHHHCCCCCCCCCCCCCCHHH
T ss_conf             --------------------------------2233100122001233332222222-0111012123543246424788


Q ss_pred             CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf             11868999786789706445570252777785797757
Q 001612          908 IGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSH  945 (1044)
Q Consensus       908 ~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~  945 (1044)
                      |.++++|+.|++++|+++...+..+.+++.|+.+++.+
T Consensus       197 f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             TTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             HCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCC
T ss_conf             66899999898979928945977973771341476788

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.91  E-value=3.4e-23  Score=132.85  Aligned_cols=53  Identities=19%  Similarity=0.292  Sum_probs=21.0

Q ss_pred             CCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             753199934781211488354787899889687998867776001186899978678
Q 001612          864 SIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLS  920 (1044)
Q Consensus       864 ~~L~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~ls  920 (1044)
                      +.|+.||+++|++++. | .+.++++|+.|+|++|++++. | .+++++.|+.|+++
T Consensus       173 ~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         173 SKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLT  225 (227)
T ss_dssp             TTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEE
T ss_pred             CCCEECCCCCCCCCCC-H-HHCCCCCCCEEECCCCCCCCC-C-CCCCCCCCCEEEEE
T ss_conf             6335644588841778-5-344799999897959968998-0-20369998989712

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.90  E-value=1.2e-23  Score=135.26  Aligned_cols=135  Identities=24%  Similarity=0.270  Sum_probs=65.9

Q ss_pred             EEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf             898448823335783576405643158789996767-6688878898753996889978555860132899994997789
Q 001612          672 VLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSG-TLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGN  750 (1044)
Q Consensus       672 ~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~  750 (1044)
                      .++.++++++ .+|..+   .+.++.|+|++|++++ ..+..|.++++|+.|+|++|.+.+..+..|..+++|+.|++++
T Consensus        12 ~v~Cs~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          12 TVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             EEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             EEEEECCCCC-CCCCCC---CCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECC
T ss_conf             9997089967-029898---978788984898775530200257876272130136322121212221122221010035


Q ss_pred             CCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHH
Q ss_conf             81556889333317799599835871345778998999999632998578737775795667
Q 001612          751 NKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCI  812 (1044)
Q Consensus       751 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~g~ip~~~~  812 (1044)
                      |++....+.+|.++++|++|+|++|.+++..  +..+..+++|+.+++++|++.+.+...++
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~--~~~f~~l~~L~~l~L~~N~~~~~~~~~~~  147 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVM--PGSFEHLNSLTSLNLASNPFNCNCHLAWF  147 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEEC--TTSSTTCTTCCEEECTTCCBCCSGGGHHH
T ss_pred             CCCCCCCHHHHHCCCCCCCCCCCCCCCCCCC--HHHHCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf             5344349799807974655245774535359--77856875334200036443435302777

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.89  E-value=2.9e-22  Score=128.06  Aligned_cols=77  Identities=31%  Similarity=0.447  Sum_probs=43.9

Q ss_pred             CCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             37531999347812114883547878998896879988677760011868999786789706445570252777785797
Q 001612          863 LSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLN  942 (1044)
Q Consensus       863 ~~~L~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~  942 (1044)
                      ++.++.+++++|.+++.  ..+..+++|+.+++++|.+++ ++ .++++++|+.|++++|+++. +| .+.++++|++|+
T Consensus       133 l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~  206 (210)
T d1h6ta2         133 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLE  206 (210)
T ss_dssp             CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEE
T ss_pred             CCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCC-CC-CCCCCCCCCEEECCCCCCCC-CH-HHCCCCCCCEEE
T ss_conf             11122211222333454--310001332100134643025-64-53678989999897998998-72-116999989997


Q ss_pred             CCC
Q ss_conf             757
Q 001612          943 LSH  945 (1044)
Q Consensus       943 l~~  945 (1044)
                      +++
T Consensus       207 Ls~  209 (210)
T d1h6ta2         207 LFS  209 (210)
T ss_dssp             EEE
T ss_pred             CCC
T ss_conf             118

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.89  E-value=1.9e-22  Score=128.97  Aligned_cols=163  Identities=23%  Similarity=0.305  Sum_probs=88.9

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECC
Q ss_conf             43158789996767668887889875399688997855586013289999499778981556889333317799599835
Q 001612          694 ILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLR  773 (1044)
Q Consensus       694 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~  773 (1044)
                      +++.|++++|.++...  .+..+++|++|++++|.+++..  .+..+++|+.|++++|++++. | .+.++++|+.|+++
T Consensus        47 ~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDL-S-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             TCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCEEECT
T ss_pred             CCCEEECCCCCCCCCH--HHHHCCCCCEEECCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCC-C-CCCCCCCCCCCCCC
T ss_conf             8458978279888744--4764899898769896025860--113586212014333332122-2-12122211122345


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf             87134577899899999963299857873777579566754321024401110366542200012344221221698644
Q 001612          774 SNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSK  853 (1044)
Q Consensus       774 ~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  853 (1044)
                      +|.+..    ...+..++.++.+++++|.+++..+                                             
T Consensus       121 ~~~~~~----~~~l~~l~~l~~l~~~~n~l~~~~~---------------------------------------------  151 (210)
T d1h6ta2         121 HNGISD----INGLVHLPQLESLYLGNNKITDITV---------------------------------------------  151 (210)
T ss_dssp             TSCCCC----CGGGGGCTTCCEEECCSSCCCCCGG---------------------------------------------
T ss_pred             CCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCC---------------------------------------------
T ss_conf             653221----1220111112221122233345431---------------------------------------------


Q ss_pred             CCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf             83455766137531999347812114883547878998896879988677760011868999786789
Q 001612          854 GLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSM  921 (1044)
Q Consensus       854 ~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~ls~  921 (1044)
                            ...++.|+.+++++|.+++. + .+.++++|+.|+|++|.++ .+| .+.++++|+.|++++
T Consensus       152 ------~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         152 ------LSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             ------GGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred             ------CCCCCCCCCCCCCCCCCCCC-C-CCCCCCCCCEEECCCCCCC-CCH-HHCCCCCCCEEECCC
T ss_conf             ------00013321001346430256-4-5367898999989799899-872-116999989997118

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.4e-23  Score=133.66  Aligned_cols=10  Identities=30%  Similarity=0.647  Sum_probs=3.3

Q ss_pred             CCCEEECCCC
Q ss_conf             9999986799
Q 001612          128 NLTNLNLSNA  137 (1044)
Q Consensus       128 ~L~~L~Ls~~  137 (1044)
                      +|++||+++|
T Consensus        47 ~L~~LdLs~~   56 (284)
T d2astb2          47 RVQHMDLSNS   56 (284)
T ss_dssp             CCCEEECTTC
T ss_pred             CCCEEECCCC
T ss_conf             7887889898

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.87  E-value=9.9e-21  Score=120.05  Aligned_cols=73  Identities=38%  Similarity=0.518  Sum_probs=38.8

Q ss_pred             CCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             3753199934781211488354787899889687998867776001186899978678970644557025277778579
Q 001612          863 LSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFL  941 (1044)
Q Consensus       863 ~~~L~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l  941 (1044)
                      ++.++.+++++|.+.. +| .+..++.++.|++++|.+++. + .++++++|+.|++++|+++. ++ .+..+++|+.|
T Consensus       127 l~~L~~L~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         127 LTNLNRLELSSNTISD-IS-ALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             CTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             HHHHHHHHHHHHHHCC-CC-CCCCCCCCCCCCCCCCCCCCC-C-CCCCCCCCCEEECCCCCCCC-CC-CCCCCCCCCCC
T ss_conf             2236776431111002-34-333211111122345555677-0-11679989999787997998-81-01278998949

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.7e-21  Score=124.04  Aligned_cols=175  Identities=14%  Similarity=0.071  Sum_probs=78.1

Q ss_pred             CCCEEECCCCCCCCC-CCCCCCCCCCCCEEECC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCH-HHHCCCCCCEE
Q ss_conf             431587899967676-68887889875399688-9978555860132899994997789815568893-33317799599
Q 001612          694 ILGVLNLRGNSLSGT-LSVTFPGNCGLHTLDLN-GNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPW-WLENISSLRVL  770 (1044)
Q Consensus       694 ~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~-~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L  770 (1044)
                      +|+.|++++|.+... .+..|.+++.++++.+. .|.+....+..|.++++|+.+++++|.+....+. .+..+..+..+
T Consensus        54 ~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~  133 (242)
T d1xwdc1          54 DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLD  133 (242)
T ss_dssp             TCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEE
T ss_pred             HHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCC
T ss_conf             32321102211242010011222222222111112343222222122222222223421111255433322211112222


Q ss_pred             ECCCCCCCCCCCCCCCCCCC-CCCCEEECCCCCCCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             83587134577899899999-96329985787377757956675432102440111036654220001234422122169
Q 001612          771 VLRSNSFYGNISCRENGDSW-PKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVT  849 (1044)
Q Consensus       771 ~L~~N~l~~~~~~~~~~~~l-~~L~~L~ls~N~~~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  849 (1044)
                      ...++.+...-  +..+..+ ..++.+++++|+++. ++...+                                     
T Consensus       134 ~~~n~~l~~i~--~~~~~~~~~~l~~L~l~~n~l~~-i~~~~~-------------------------------------  173 (242)
T d1xwdc1         134 IQDNINIHTIE--RNSFVGLSFESVILWLNKNGIQE-IHNCAF-------------------------------------  173 (242)
T ss_dssp             EESCTTCCEEC--TTSSTTSBSSCEEEECCSSCCCE-ECTTTT-------------------------------------
T ss_pred             CCCCCCCCCCC--CCCCCCCCCCCEEEECCCCCCCC-CCCCCC-------------------------------------
T ss_conf             22212111222--22222223310012200123333-222222-------------------------------------


Q ss_pred             EEECCCHHHHHHHCCCCE-EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             864483455766137531-99934781211488354787899889687998867776001186899978678
Q 001612          850 VTSKGLEMELVKILSIFT-SIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLS  920 (1044)
Q Consensus       850 ~~~~~~~~~~~~~~~~L~-~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~ls  920 (1044)
                                  ..+.+. .+++++|+++...+..|.++++|+.|++++|+++...+..|.+++.|+.+++.
T Consensus       174 ------------~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         174 ------------NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             ------------TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             ------------CCHHHHCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCC
T ss_conf             ------------201110121235432464247886689999989897992894597797377134147678

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.86  E-value=1.3e-20  Score=119.41  Aligned_cols=51  Identities=29%  Similarity=0.508  Sum_probs=29.3

Q ss_pred             CCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             3753199934781211488354787899889687998867776001186899978
Q 001612          863 LSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESL  917 (1044)
Q Consensus       863 ~~~L~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L  917 (1044)
                      ++.++.+++++|.+++..  .++++++|+.|++++|++++ +| .++++++|+.|
T Consensus       149 ~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         149 LTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             CTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             CCCCCCCCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCC-CC-CCCCCCCCCCC
T ss_conf             111111223455556770--11679989999787997998-81-01278998949

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=7.9e-21  Score=120.56  Aligned_cols=58  Identities=22%  Similarity=0.331  Sum_probs=21.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf             7880017888899998898689999999998679999887880111999994995679
Q 001612          103 YLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSS  160 (1044)
Q Consensus       103 ~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~  160 (1044)
                      .|++||++++.+....+...+..+++|++|++++|.+.+..+..++++++|++|++++
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             CCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC
T ss_conf             7887889898457779999997487765145234679867899985189975715100

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.81  E-value=1.1e-21  Score=125.03  Aligned_cols=253  Identities=16%  Similarity=0.139  Sum_probs=0.0

Q ss_pred             CCCCCCCCCCCCCEEECCCCCCCCC----CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC--HHHHHHCCCCCCEECCC
Q ss_conf             8898689999999998679999887----88011199999499567988899876457997--56775205457363089
Q 001612          118 EIPSGLGSLTNLTNLNLSNAGFAGQ----IPIQVSGMTRLVTLDLSSLNRFGAPLKLENPN--LSGLLQNLAELRELYLD  191 (1044)
Q Consensus       118 ~lp~~l~~l~~L~~L~Ls~~~~~~~----lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~--l~~~l~~l~~L~~L~l~  191 (1044)
                      .+...+.....|+.|++++|.+...    +...+...+.|+.++++++.............  +...+...++|++|+++
T Consensus        22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  101 (344)
T d2ca6a1          22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  101 (344)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             99999963899788978498377899999999998589988888877754334542106787999887547775633000


Q ss_pred             CCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCC-------------CCCCCCCEEECCCCCCC----CCCHHH
Q ss_conf             9668875033688873169984099658977999996000-------------27999988988899999----997275
Q 001612          192 GANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSL-------------AKLQSLSVIRLDQNDLL----SPVPEF  254 (1044)
Q Consensus       192 ~~~l~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l-------------~~l~~L~~L~Ls~n~~~----~~~~~~  254 (1044)
                      ++.++..+...+.......++|+.|++++|.+.......+             ...+.|+.+++++|.+.    ..+...
T Consensus       102 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~  181 (344)
T d2ca6a1         102 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  181 (344)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHCCCCCCHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCH
T ss_conf             01345543331011100234321000002466665431111212222110001467642111013650135543322111


Q ss_pred             HHCCCCCCEEECCCCCCCCC-----CCHHHCCCCCCCEEECCCCCCCCCCCCCCCC----CCCCCEEECCCCCCCCCCCC
Q ss_conf             40999976998458989888-----5711007899889977899899889899899----99886898568737766962
Q 001612          255 LADFFNLTSLRLSHSRLNGT-----FPEKILQVHTLETLDLSGNSLLQGSLPDFPK----NSSLRTLMLSNTNFSGVLPD  325 (1044)
Q Consensus       255 l~~l~~L~~L~L~~n~l~~~-----~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~----l~~L~~L~L~~n~~~~~~~~  325 (1044)
                      +..++.|+.|+++.|.+...     +...+..+++|+.|++++|.+.......+..    +++|++|++++|.+++....
T Consensus       182 l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~  261 (344)
T d2ca6a1         182 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  261 (344)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHH
T ss_conf             12333213354333222222232002433211012112223333222222223444332322111103004756715667


Q ss_pred             CC------CCCCCCCEEECCCCCCCCCCCHHHC-----CCCCCCEEECCCCCCCCC
Q ss_conf             33------4899999994558658997701103-----999975996757866477
Q 001612          326 SI------GNLKNLSRLDLALCYFDGSIPTSLA-----NLTQLVYLDLSFNKFVGP  370 (1044)
Q Consensus       326 ~l------~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~l~~n~l~~~  370 (1044)
                      .+      ...+.|++|++++|.+.......+.     ++++|+.|++++|.+...
T Consensus       262 ~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCCC
T ss_conf             88877631568888989898986980899999999970389999897879808986

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.1e-17  Score=104.21  Aligned_cols=107  Identities=21%  Similarity=0.141  Sum_probs=37.9

Q ss_pred             CCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             58886898448823335783576405643158789996767668887889875399688997855586013289999499
Q 001612          667 AKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVL  746 (1044)
Q Consensus       667 ~~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  746 (1044)
                      +..+++|++++|+++ .++.....+ +.|+.|++++|.++..  +.|..+++|++|++++|+++...+..+..+++|+.|
T Consensus        17 ~~~lr~L~L~~n~I~-~i~~~~~~l-~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          17 AVRDRELDLRGYKIP-VIENLGATL-DQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             TTSCEEEECTTSCCC-SCCCGGGGT-TCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CCCCCEEECCCCCCC-CCCCCCCCC-CCCCEEECCCCCCCCC--CCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             574848978899788-657620041-4599898979978764--774457613064310213457776322334534434


Q ss_pred             ECCCCCCCCCCC-HHHHCCCCCCEEECCCCCC
Q ss_conf             778981556889-3333177995998358713
Q 001612          747 DLGNNKIRDTFP-WWLENISSLRVLVLRSNSF  777 (1044)
Q Consensus       747 ~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l  777 (1044)
                      ++++|++..... ..+..+++|+.|++++|++
T Consensus        93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i  124 (162)
T d1a9na_          93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPV  124 (162)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred             EECCCCCCCCCCCCCCCCCCCCCHHHCCCCCC
T ss_conf             20300016654211001365320664079963

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=7.8e-17  Score=99.82  Aligned_cols=11  Identities=27%  Similarity=0.223  Sum_probs=3.4

Q ss_pred             CCCCEEECCCC
Q ss_conf             89997867897
Q 001612          912 QQLESLDLSMN  922 (1044)
Q Consensus       912 ~~L~~L~ls~N  922 (1044)
                      ++|+.+++++|
T Consensus       112 ~~L~~L~l~~N  122 (162)
T d1a9na_         112 KSLTYLCILRN  122 (162)
T ss_dssp             TTCCEEECCSS
T ss_pred             CCCCHHHCCCC
T ss_conf             53206640799

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=1.1e-15  Score=93.96  Aligned_cols=57  Identities=33%  Similarity=0.529  Sum_probs=18.6

Q ss_pred             CEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf             319993478121148835478789988968799886777600118689997867897064
Q 001612          866 FTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLS  925 (1044)
Q Consensus       866 L~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~  925 (1044)
                      ++.||+++|.++ .+|..++.+++|+.|++++|.+++ +| .+..+++|+.|++++|+++
T Consensus        22 L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3          22 VTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             CCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCC
T ss_pred             CCEEECCCCCCC-CCHHHHHHHHCCCCCCCCCCCCCC-CC-CCCCCCCCCEEECCCCCCC
T ss_conf             898979787168-652156554313545324321123-57-4123355576888898658

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=9.1e-15  Score=89.10  Aligned_cols=88  Identities=22%  Similarity=0.175  Sum_probs=47.7

Q ss_pred             CCCEEEECCCC-CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             75319993478-12114883547878998896879988677760011868999786789706445570252777785797
Q 001612          864 SIFTSIDFSRN-NFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLN  942 (1044)
Q Consensus       864 ~~L~~LdLs~N-~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~  942 (1044)
                      +.++.|++++| .++...+..|.+++.|+.|+|++|+++...|.+|..+++|+.|+|++|+++...+..+.. ..|+.|+
T Consensus        31 ~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~-~~l~~L~  109 (156)
T d2ifga3          31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQELV  109 (156)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS-CCCCEEE
T ss_pred             CCCCEEECCCCCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHCC-CCCCCCC
T ss_conf             565743168986644369212256666672162021247742011124554333322678785157456335-3212433


Q ss_pred             CCCCCCCCCC
Q ss_conf             7578153469
Q 001612          943 LSHNNLVGKI  952 (1044)
Q Consensus       943 l~~N~l~g~i  952 (1044)
                      +++|++.+.+
T Consensus       110 L~~Np~~C~C  119 (156)
T d2ifga3         110 LSGNPLHCSC  119 (156)
T ss_dssp             CCSSCCCCCG
T ss_pred             CCCCCCCCCC
T ss_conf             5798633881

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=7.2e-14  Score=84.43  Aligned_cols=100  Identities=19%  Similarity=0.160  Sum_probs=45.0

Q ss_pred             CCCCCCCCEEECCCC-CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             788987539968899-7855586013289999499778981556889333317799599835871345778998999999
Q 001612          713 FPGNCGLHTLDLNGN-QLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWP  791 (1044)
Q Consensus       713 ~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~  791 (1044)
                      +.++++|++|++++| .++.+.+..|.++++|+.|++++|+++...+..|..+++|+.|+|++|++...   +.......
T Consensus        27 l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l---~~~~~~~~  103 (156)
T d2ifga3          27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESL---SWKTVQGL  103 (156)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCC---CSTTTCSC
T ss_pred             CCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCC---CHHHHCCC
T ss_conf             257656574316898664436921225666667216202124774201112455433332267878515---74563353


Q ss_pred             CCCEEECCCCCCCCCCCHHHHHHH
Q ss_conf             632998578737775795667543
Q 001612          792 KLQIVDLASNNFGGRVPQKCITSW  815 (1044)
Q Consensus       792 ~L~~L~ls~N~~~g~ip~~~~~~~  815 (1044)
                      .++.|++++|++...+-..++..|
T Consensus       104 ~l~~L~L~~Np~~C~C~~~~l~~~  127 (156)
T d2ifga3         104 SLQELVLSGNPLHCSCALRWLQRW  127 (156)
T ss_dssp             CCCEEECCSSCCCCCGGGHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             212433579863388117999999

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.54  E-value=1.7e-16  Score=98.02  Aligned_cols=41  Identities=34%  Similarity=0.395  Sum_probs=14.4

Q ss_pred             CCCCCCCCEEECCCCCCCCCCC--CCCCCCCCCCEEECCCCCCC
Q ss_conf             4787899889687998867776--00118689997867897064
Q 001612          884 IGRLKSLHGLNLSQNALTGPIP--SAIGNLQQLESLDLSMNHLS  925 (1044)
Q Consensus       884 ~~~l~~L~~L~Ls~N~l~g~ip--~~~~~l~~L~~L~ls~N~l~  925 (1044)
                      +..+++|+.|++++|+++. ++  ..+..+++|+.|++++|.+.
T Consensus       111 ~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         111 IEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             CCCCCCCCCCCCCCCHHCC-CCCCCCCCCCCCCCEEECCCCCCC
T ss_conf             2222234111234102125-542212367776302342798434

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=2e-09  Score=61.30  Aligned_cols=85  Identities=24%  Similarity=0.149  Sum_probs=0.0

Q ss_pred             HHHHHCCCCEEEECCCCCCCCC--CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC----
Q ss_conf             5766137531999347812114--8835478789988968799886777600118689997867897064455702----
Q 001612          858 ELVKILSIFTSIDFSRNNFDGP--IPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQ----  931 (1044)
Q Consensus       858 ~~~~~~~~L~~LdLs~N~l~~~--ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~----  931 (1044)
                      .....++.|+.|++++|+++..  ++..+..+++|+.|+|++|.++...+-.+.....|+.+++++|.++......    
T Consensus        59 ~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~  138 (162)
T d1koha1          59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYI  138 (162)
T ss_dssp             HHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHH
T ss_pred             HHHHHCCCCCEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHH
T ss_conf             88974878788637776666773158898658856100043572134234422203310426648997676766615699


Q ss_pred             ---CCCCCCCCEEE
Q ss_conf             ---52777785797
Q 001612          932 ---LANLTFLSFLN  942 (1044)
Q Consensus       932 ---~~~l~~L~~l~  942 (1044)
                         +..+++|+.||
T Consensus       139 ~~i~~~~P~L~~LD  152 (162)
T d1koha1         139 SAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHTTSTTCCEET
T ss_pred             HHHHHHCCCCCEEC
T ss_conf             99999889978799

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.57  E-value=9.9e-08  Score=52.56  Aligned_cols=120  Identities=15%  Similarity=0.143  Sum_probs=0.0

Q ss_pred             HHHHHHCCCCCCEECCCC-CCCCCCHHHHHHHHHCCCCCCEEEECCCCCCC----CCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             567752054573630899-66887503368887316998409965897799----9996000279999889888999999
Q 001612          175 LSGLLQNLAELRELYLDG-ANISAPGIEWCQALSSLVPKLQVLSLSSCYLS----GPIHPSLAKLQSLSVIRLDQNDLLS  249 (1044)
Q Consensus       175 l~~~l~~l~~L~~L~l~~-~~l~~~~~~~l~~l~~~~~~L~~L~L~~~~~~----~~~~~~l~~l~~L~~L~Ls~n~~~~  249 (1044)
                      +.....+.++|++|++++ +.++..+...+.......+.|+.|++++|.+.    ..+...+...+.|++|++++|.+..
T Consensus         7 l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~   86 (167)
T d1pgva_           7 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP   86 (167)
T ss_dssp             HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             HHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEHHHCCH
T ss_conf             99998289998197827999989899999999976377645401201562156798875310002343300330102145


Q ss_pred             C----CHHHHHCCCCCCEEECCCCCCCCC-------CCHHHCCCCCCCEEECCCCC
Q ss_conf             9----727540999976998458989888-------57110078998899778998
Q 001612          250 P----VPEFLADFFNLTSLRLSHSRLNGT-------FPEKILQVHTLETLDLSGNS  294 (1044)
Q Consensus       250 ~----~~~~l~~l~~L~~L~L~~n~l~~~-------~p~~l~~l~~L~~L~ls~n~  294 (1044)
                      .    +...+...+.|++|+++++.....       +...+...++|+.|+++.+.
T Consensus        87 ~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          87 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf             99999999998489389877887768886579999999999729985386486888

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.14  E-value=9.3e-07  Score=47.50  Aligned_cols=120  Identities=17%  Similarity=0.208  Sum_probs=0.0

Q ss_pred             HHHHHHCCCCCCEECCCC-CCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCC----CCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             567752054573630899-6688750336888731699840996589779999----96000279999889888999999
Q 001612          175 LSGLLQNLAELRELYLDG-ANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGP----IHPSLAKLQSLSVIRLDQNDLLS  249 (1044)
Q Consensus       175 l~~~l~~l~~L~~L~l~~-~~l~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~Ls~n~~~~  249 (1044)
                      +.....+.+.|++|++++ +.++..+...+.......++|++|++++|.+...    +...+...+.++.++++++.+..
T Consensus         9 l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~   88 (166)
T d1io0a_           9 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG   88 (166)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCC
T ss_conf             99999559998688768999989899999998884198257430158961177899999877521221012102543220


Q ss_pred             C----CHHHHHCCCCCCE--EECCCCCCCC----CCCHHHCCCCCCCEEECCCCC
Q ss_conf             9----7275409999769--9845898988----857110078998899778998
Q 001612          250 P----VPEFLADFFNLTS--LRLSHSRLNG----TFPEKILQVHTLETLDLSGNS  294 (1044)
Q Consensus       250 ~----~~~~l~~l~~L~~--L~L~~n~l~~----~~p~~l~~l~~L~~L~ls~n~  294 (1044)
                      .    +...+...+.|+.  |+++.+.+..    .+...+...+.|+.|+++.+.
T Consensus        89 ~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          89 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf             1478899999848652477321677867679999999999849984788581898