Citrus Sinensis ID: 001619

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040---
Protein Sequence
MEVQISNLESLSAEPNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVRTAYECPGRETKSLRAFIRGKRESNVASLPQPFESEHLMPSASQDKKFSPPEKSDSESGDDATSLPSNQKSPLPENHDIRSDGAEVDILLSGEADSSSQDRMQQVPPEAAEQHSQDACDPEVLSLDLAHQVTNENETVQASEAFSEEDDVQREYEHESKKDLKPLSLEGLSLDPGGNDSPGSLCATSHECEAPQKTNFSHESMLKSEAPRETSLSDGSVLGASQNNNGSHFAPSSMGTQASSSAPIQTRTVSPSSSASHQNFIPEAHSHPQTPANSGRNWHEQQNPDRVHRDLRFGYRGHSHKRQHQQRRFSSQRYPRNESGDQMPMNSRFPSQPLPSQNPQAQQGSQAQSQFLHSLTAQAWPMQNMQQQTFASASQSEVPAQPVFYPQAQMSQYPSQSSEQQGLLQSNLAYNQMWQYYYYQQQQQQQLFLQQQHLQLQQQHLQPLQQQQFVQQQQYQQQHSLYLQQQPQHQQLEQYQMQQQVQQQDQHPPQQWQLEQRQSEQQIGMSQIEKWNNSSKQVCD
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcHHHHHcHHHHHHHHHHHHHHHccccccccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccHHcHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccHHHHcccccccccccccccccccccccccccccHHHHcccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHcccHHHHHHHHHHHHHHHHHcHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcHcHHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccHHHHHHHHHccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHccHHHHHHHHHcccccccHHHHHHHcccccccccccEEEEcccccccccccHHHHHHHHHHHHcccccHcccccHHHHHHccccccccccccccccccccccccccccccccHHccccccEccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccHHHHHHcccccccccccccccHHHHHHHHcccccccccccccccccccHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHccHHHHHHHHHHHcccHHHHHHHHHcHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHccccccccccc
Coil and Loop (DISEMBL)
mevqisnleslsaepnspvgfgkqGLEEFIAEGSLDFDEWTSLLSEIEnscpddieMIGLVYDSFLaefplcygywrkyadhkARLCSIDKVVEVFERAVQSATYSVDVWFHYCSlsmstfedpnDVRRLFKRALSFvgkdylchTMWDKYIEFEISQQRWSSLAQIFVQTLrfpskklhHYYDSFKKLAGAWKEELECESDSAMEFQSELvlegevpayykddetssvikdlldpsvdLVRSKAIQKYRFIGEQIYKEASQLDEKINCFenlirrpyfhvkplddiqlknWHDYLSFAEKQGDFDWVVKLYERclipcadypeFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARykeqigdtsaaraafpesyidsdsRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTmvhggrshISIVDAVISNalysrpdvlkvfsledVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTvrtayecpgretKSLRAFIRgkresnvaslpqpfesehlmpsasqdkkfsppeksdsesgddatslpsnqksplpenhdirsdgaEVDILLsgeadsssqdrmqqvppeaaeqhsqdacdpevlsLDLAhqvtnenetvqaseafseeddVQREYEheskkdlkplsleglsldpggndspgslcatsheceapqktnfshesmlkseapretslsdgsvlgasqnnngshfapssmgtqasssapiqtrtvspsssashqnfipeahshpqtpansgrnwheqqnpdrvhrdlrfgyrghshkrqhqqrrfssqryprnesgdqmpmnsrfpsqplpsqnpqaqqgsqaQSQFLHSLTAqawpmqnmqqqtfasasqsevpaqpvfypqaqmsqypsqsseqqGLLQSNLAYNQMWQYYYYQQQQQQQLFLQQQHLQLQQQHLQPLQQQQFVQQQQYQQQHSLYLQQQPQHQQLEQYQMQQQVqqqdqhppqqwQLEQRQSEQQIGMSQIEKWnnsskqvcd
Flexible Loop (DISEMBL)
mevqisnleslsaepnspvGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSmstfedpndVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAyykddetssvikdlldpsvdlvRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAfpesyidsdsrfIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVRTAYECPGRETKSLRafirgkresnvaslpqpfeSEHLMPSASQDKKFSPPEKSDsesgddatslpsnqksplpenhdirSDGAEVDILLSGEADSSSQDRMQQVPPEAAEQHSQDACDPEVLSLDLAHQVTNENEtvqaseafseedDVQREYEheskkdlkplsLEGLSLDPGGNDSPGSLCATSHECEAPQKTNFSHESMLKSEAPRETSLSDGSVLGASQNNNGSHFAPSSMGTQASSSAPIQTRTVSPSSSASHQNFIPEAHSHPQTPANSGRNWHEQQNPDRVHRDLRFGYRghshkrqhqqrrfssqryprnESGDQMPMNSRFPSQPLPSQNPQAQQGSQAQSQFLHSLTAQAWPMQNMQQQTFASASQSEVPAQPVFYPQAQMSQYPSQSSEQQGLLQSNLAYNQMWQYYYYQQQQQQQLFLQQQHLQLQQQHLQPLQQQQFVQQQQYQQQHSLYLQQQPQHQQLEQYQMQQQVQQQDQHPPQQWQLEQRQSEQQIGMsqiekwnnsskqvcd
Low Complexity Region (SEG)
MEVQISNLESLSAEPNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVRTAYECPGRETKSLRAFIRGKRESNVASLPQPFESEHLMPSASQDKKFSPPEKSDSESGDDATSLPSNQKSPLPENHDIRSDGAEVDILLSGEADSSSQDRMQQVPPEAAEQHSQDACDPEVLSLDLAHQVTNENETVQASEAFSEEDDVQREYEHESKKDLKPLSLEGLSLDPGGNDSPGSLCATSHECEAPQKTNFSHESMLKSEAPRETSLSDGSVLGASQNNNGSHFAPSSMGTQASSSAPIQTRTVSPSSSASHQNFIPEAHSHPQTPANSGRNWHEQQNPDRVHRDLRFGYRGhshkrqhqqrrfssqrYPRNESGDQMPMNSRFPSQPLpsqnpqaqqgsqaqsqFLHSLTAQAWPMQNMQQQTFASASQSEVPAQPVFYPQAQMSQYPsqsseqqgllqsnlAYNqmwqyyyyqqqqqqqlflqqqhlqlqqqhlqplqqqqfvqqqqyqqqhslylqqqpqhqqleqyqmqqqvqqqdqhppqqwqleqrqseqqIGMSQIEKWNNSSKQVCD
Disordered region (IsUnstruct)
************************GLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVRTAYECPGRET**LRAF******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************SNLAYNQMWQYYYY*****************************************************************************************************
Disordered Region (DISOPRED)
*********************GKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYS**************DISSLYLQFLDLCGTIHDIRNAWNQHIKLFP***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************QYYYYQQQ**************************************************************************************************
Disordered Region (DISEMBL)
MEVQISNLESLSAEPNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEE**********FQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVRTAYECPGRETKSLRAFIRGKRESNVASLPQPFESE**************************************ENHDIRSDGAEVDILLSGE*************************DPEVLSLDLAHQVTNENETVQAS*******************DLKPLSLEGLSLDPGGNDSPGSLCATSHECEAPQKTNFS*****************GSVLGASQNNNGSHFAP***************************NFIPEAHS******************DRVHRDLRFGYR************************DQMPMNSRF*********************FLHSLTAQAWPMQNMQ************PAQPVFYPQAQ*************LLQSNLAYNQMWQYYYYQQQQQQQLFLQQ************************************************************************GMSQIEKW*********
Disordered Region (DISPRO)
******************VGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYY******SVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVRTAYECPGRETKSLRAFIRGKRE*************************************DATSL****KSPLPENHDIRSDGAEVDILLSGEADSSSQDRMQQVPPEAAEQHSQDACDPEVLSLDLAHQVTNENETVQASEAFSEEDDVQR*YE*ES***L*****************************************************************************************************************************************************************************************************QAWPMQNMQQQTFASAS**EVPAQPVFYPQA**S*********QGLLQSNLAYNQMWQYYYYQQQQQQQLFLQQQHLQLQQQHLQPLQQQQFVQQQQYQQQHSLYLQQQPQHQQLEQYQMQQQVQQQDQHPPQQWQLEQRQSEQQIGMSQI************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEVQISNLESLSAEPNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVRTAYECPGRETKSLRAFIRGKRESNVASLPQPFESEHLMPSASQDKKFSPPEKSDSESGDDATSLPSNQKSPLPENHDIRSDGAEVDILLSGEADSSSQDRMQQVPPEAAEQHSQDACDPEVLSLDLAHQVTNENETVQASEAFSEEDDVQREYEHESKKDLKPLSLEGLSLDPGGNDSPGSLCATSHECEAPQKTNFSHESMLKSEAPRETSLSDGSVLGASQNNNGSHFAPSSMGTQASSSAPIQTRTVSPSSSASHQNFIPEAHSHPQTPANSGRNWHEQQNPDRVHRDLRFGYRGHSHKRQHQQRRFSSQRYPRNESGDQMPMNSRFPSQPLPSQNPQAQQGSQAQSQFLHSLTAQAWPMQNMQQQTFASASQSEVPAQPVFYPQAQMSQYPSQSSEQQGLLQSNLAYNQMWQYYYxxxxxxxxxxxxxxxxxxxxxHLQPLQQQQFVQQQQYQQQHSLYLQQQPQHQQLEQYQMQQQVQQQDQHPPQQWQLEQRQSEQQIGMSQIEKWNNSSKQVCD
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1043	2.2.26 [Sep-21-2011]
Q4KLU2	641	Pre-mRNA-processing facto	N/A	no	0.354	0.577	0.327	2e-52
O74970	612	Pre-mRNA-processing facto	yes	no	0.347	0.591	0.328	3e-49
Q86UA1	669	Pre-mRNA-processing facto	yes	no	0.359	0.560	0.316	1e-48
Q1JPZ7	752	Pre-mRNA-processing facto	yes	no	0.391	0.542	0.278	2e-44
Q8K2Z2	665	Pre-mRNA-processing facto	yes	no	0.383	0.601	0.298	1e-43
Q7KRW8	1066	Pre-mRNA-processing facto	yes	no	0.151	0.148	0.354	8e-25
P39682	629	Pre-mRNA-processing facto	yes	no	0.264	0.438	0.234	3e-21

>sp|Q4KLU2|PRP39_XENLA Pre-mRNA-processing factor 39 OS=Xenopus laevis GN=prpf39 PE=2 SV=1

 Score =  208 bits (529), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 131/400 (32%), Positives = 210/400 (52%), Gaps = 30/400 (7%)

Query: 36  DFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEV 95
           DF+ WT LL  +E    + +      +D+FLA +P CYGYW+KYAD + +  +I +  EV
Sbjct: 69  DFNTWTYLLQYVEQE--NHLFAARKAFDAFLAHYPYCYGYWKKYADLEKKNNNILEADEV 126

Query: 96  FERAVQSATYSVDVWFHYCSLSMSTFEDPND------VRRLFKRALSFVGKDYLCHTMWD 149
           + R +Q+ T SVD+W HY +    T  DP D      +R  F+ A+   G D+    +W+
Sbjct: 127 YRRGIQAITLSVDLWMHYLNFLKETL-DPADPETSLTLRGTFEHAVVSAGLDFRSDKLWE 185

Query: 150 KYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKK-LAGAWKEELECESDSAMEFQ 208
            YI +E  Q   S +  I+ + L  P++    ++  FK+ + G    E    S+  +E +
Sbjct: 186 MYINWETEQGNLSGVTSIYSRLLGIPTQFYSLHFQRFKEHIQGHLPREF-LTSEKFIELR 244

Query: 209 SEL---VLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDE 265
            EL    L G       +D+  S ++++ DP+    R+  ++  R    ++++E   L+E
Sbjct: 245 KELASMTLHGGT-----NDDIPSGLEEIKDPAK---RTTEVENMRHRIIEVHQEIFNLNE 296

Query: 266 ----KINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCAD 321
               KI  FE  I+RPYFHVKPL+  QL NW +YL F  + G  + +V L+ERC+I CA 
Sbjct: 297 HEVSKIWNFEEEIKRPYFHVKPLEKAQLNNWKEYLEFELENGSNERIVILFERCVIACAC 356

Query: 322 YPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAF 381
           Y EFW++Y  +ME+    E   +  +RA  + L + P++HL  A ++EQ G+   AR   
Sbjct: 357 YEEFWIKYAKYMENHSV-EGVRHVYNRACHVHLAKKPMVHLLWAAFEEQQGNLEEARRIL 415

Query: 382 PESYIDSDSRFIEKVTF-KANMERRLGNFVAACDTYKEAL 420
               I++    +  V   + N+ERR GN   A    +EA+
Sbjct: 416 KN--IETAIEGLAMVRLRRVNLERRHGNVKEAEHLLEEAM 453

Involved in pre-mRNA splicing.
Xenopus laevis (taxid: 8355)

>sp|O74970|PRP39_SCHPO Pre-mRNA-processing factor 39 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp39 PE=3 SV=1

 Score =  197 bits (501), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 125/381 (32%), Positives = 197/381 (51%), Gaps = 19/381 (4%)

Query: 36  DFDEWTSLLSEIE--------NSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLC 87
           DFD W  L+   E        NS    I  +  VYD FL ++PL +GYW+KYAD +  + 
Sbjct: 27  DFDAWEGLVRASEHLEGGVGRNSSKQAINTLRSVYDRFLGKYPLLFGYWKKYADFEFFVA 86

Query: 88  SIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTM 147
             +    ++ER +    +SVD+W +YC+  M T  D N+VR LF +  + VG D+L H  
Sbjct: 87  GAEASEHIYERGIAGIPHSVDLWTNYCAFKMETNGDANEVRELFMQGANMVGLDFLSHPF 146

Query: 148 WDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEF 207
           WDKY+EFE  Q+R  ++ Q+  + +  P  +   Y++ F +++ +   +     D     
Sbjct: 147 WDKYLEFEERQERPDNVFQLLERLIHIPLHQYARYFERFVQVSQSQPIQQLLPPDVLASI 206

Query: 208 QSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKI 267
           ++++  E   PA      +  +  +     +++ R    + Y  I  QI+++      K 
Sbjct: 207 RADVTRE---PAKVVSAGSKQITVE--RGELEIEREMRARIYN-IHLQIFQKVQLETAKR 260

Query: 268 NCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWM 327
             FE+ I+RPYFHVK LD+ QL NW  YL F E +GDF  +  LYERCLI CA Y EFW 
Sbjct: 261 WTFESEIKRPYFHVKELDEAQLVNWRKYLDFEEVEGDFQRICHLYERCLITCALYDEFWF 320

Query: 328 RYVDFMESKGGR-EIASYALDRATQIF--LKRLPVIHLFNARYKEQIGDTSAARAAFPES 384
           RY  +M ++       S   +RA+ IF  + R P I +  A ++E  G+ ++A+A + +S
Sbjct: 321 RYARWMSAQPDHLNDVSIIYERASCIFASISR-PGIRVQYALFEESQGNIASAKAIY-QS 378

Query: 385 YIDSDSRFIEKVTFKANMERR 405
            +      +E V     +ERR
Sbjct: 379 ILTQLPGNLEAVLGWVGLERR 399

Function prior to stable branch point recognition by the U1 snRNP particle to facilitate or stabilize the U1 snRNP/5'-splice site interaction. Has a direct role in the assembly or function of a catalytically active spliceosome.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q86UA1|PRP39_HUMAN Pre-mRNA-processing factor 39 OS=Homo sapiens GN=PRPF39 PE=1 SV=3

 Score =  195 bits (496), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 128/405 (31%), Positives = 202/405 (49%), Gaps = 30/405 (7%)

Query: 36  DFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEV 95
           DF  W  LL  +E    + +      +D F   +P CYGYW+KYAD + R  +I    EV
Sbjct: 94  DFTGWVYLLQYVEQE--NHLMAARKAFDRFFIHYPYCYGYWKKYADLEKRHDNIKPSDEV 151

Query: 96  FERAVQSATYSVDVWFHYCSLSMSTFE--DP---NDVRRLFKRALSFVGKDYLCHTMWDK 150
           + R +Q+   SVD+W HY +    T +  DP   N +R  F+ A+   G D+    +W+ 
Sbjct: 152 YRRGLQAIPLSVDLWIHYINFLKETLDPGDPETNNTIRGTFEHAVLAAGTDFRSDRLWEM 211

Query: 151 YIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSE 210
           YI +E  Q     +  I+ + L  P++   H++  FK+             +  ++ + E
Sbjct: 212 YINWENEQGNLREVTAIYDRILGIPTQLYSHHFQRFKEHVQNNLPRDLLTGEQFIQLRRE 271

Query: 211 LVLEGEVPAYYKDD-----ETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDE 265
           L     V  +  DD     +  S I+D+ DP+  L+      ++R I  +I++E    +E
Sbjct: 272 L---ASVNGHSGDDGPPGDDLPSGIEDITDPA-KLITEIENMRHRII--EIHQEMFNYNE 325

Query: 266 ----KINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCAD 321
               K   FE  I+RPYFHVKPL+  QLKNW +YL F  + G  + VV L+ERC+I CA 
Sbjct: 326 HEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENGTHERVVVLFERCVISCAL 385

Query: 322 YPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAAR--- 378
           Y EFW++Y  +ME+    E   +   RA  I L + P++H+  A ++EQ G+ + AR   
Sbjct: 386 YEEFWIKYAKYMENH-SIEGVRHVFSRACTIHLPKKPMVHMLWAAFEEQQGNINEARNIL 444

Query: 379 AAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETA 423
             F E  +      + +V+    +ERR GN   A    ++A++ A
Sbjct: 445 KTFEECVLGLAMVRLRRVS----LERRHGNLEEAEHLLQDAIKNA 485

Involved in pre-mRNA splicing.

Homo sapiens (taxid: 9606)

>sp|Q1JPZ7|PRP39_DANRE Pre-mRNA-processing factor 39 OS=Danio rerio GN=prpf39 PE=2 SV=2

 Score =  181 bits (460), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 123/442 (27%), Positives = 212/442 (47%), Gaps = 34/442 (7%)

Query: 14  EPNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIG--LVYDSFLAEFPL 71
           EP  P  + +  L + + +   DF+ W  LL  +E     +  ++G    +D+F   +P 
Sbjct: 145 EPELPTEYER--LSKVVEDNPEDFNGWVYLLQYVEQ----ENHLLGSRKAFDAFFLHYPY 198

Query: 72  CYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSL-----SMSTFEDPND 126
           CYGYW+KYAD + +   I    EV+ R +Q+   SVD+W HY +        S  E  + 
Sbjct: 199 CYGYWKKYADIERKHGYIQMADEVYRRGLQAIPLSVDLWLHYITFLRENQDTSDGEAESR 258

Query: 127 VRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSF 186
           +R  ++ A+   G D+    +W+ YI +E  Q + +++  I+ + L  P++    ++  F
Sbjct: 259 IRASYEHAVLACGTDFRSDRLWEAYIAWETEQGKLANVTAIYDRLLCIPTQLYSQHFQKF 318

Query: 187 KKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSS-------VIKDLLDPS-- 237
           K    +   +     +  +  + EL      P+  +D ET +         +DL DP+  
Sbjct: 319 KDHVQSNNPKHFLSEEEFVSLRVELA-NANKPSGDEDAETEAPGEELPPGTEDLPDPAKR 377

Query: 238 ---VDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHD 294
              ++ +R K I+  + +      E S    K   FE  I+RPYFHVK L+  QL NW +
Sbjct: 378 VTEIENMRHKVIETRQEMFNHNEHEVS----KRWAFEEGIKRPYFHVKALEKTQLNNWRE 433

Query: 295 YLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFL 354
           YL F  + G  + VV L+ERCLI CA Y EFW++Y  ++ES    E   +   +A  + L
Sbjct: 434 YLDFELENGTPERVVVLFERCLIACALYEEFWIKYAKYLESY-STEAVRHIYKKACTVHL 492

Query: 355 KRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACD 414
            + P +HL  A ++EQ G    AR+      +      + ++  + ++ERR GN   A  
Sbjct: 493 PKKPNVHLLWAAFEEQQGSIDEARSILKAVEVSVPGLAMVRLR-RVSLERRHGNMEEAEA 551

Query: 415 TYKEALETA--AEQRKFHTLPL 434
             ++A+     + +  F+++ L
Sbjct: 552 LLQDAITNGRNSSESSFYSVKL 573

Involved in pre-mRNA splicing.

Danio rerio (taxid: 7955)

>sp|Q8K2Z2|PRP39_MOUSE Pre-mRNA-processing factor 39 OS=Mus musculus GN=Prpf39 PE=2 SV=3

 Score =  179 bits (454), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 130/436 (29%), Positives = 207/436 (47%), Gaps = 36/436 (8%)

Query: 7   NLESLSAEPNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFL 66
           NL    AE + P  F K    + +     DF  W  LL  +E    + +      +D F 
Sbjct: 65  NLPVTEAEGDFPPEFEK--FWKTVEMNPQDFTGWVYLLQYVEQE--NHLMAARKAFDKFF 120

Query: 67  AEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPND 126
             +P CYGYW+KYAD + R  +I +  EV+ R +Q+   SVD+W HY +    T E P D
Sbjct: 121 VHYPYCYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLE-PGD 179

Query: 127 ------VRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLH 180
                 +R  F+ A+   G D+    +W+ YI +E  Q     +  ++ + L  P++   
Sbjct: 180 QETNTTIRGTFEHAVLAAGTDFRSDKLWEMYINWENEQGNLREVTAVYDRILGIPTQLYS 239

Query: 181 HYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKD-----DETSSVIKDLLD 235
           H++  FK+             +  ++ + EL     V  +  D     D+  S I+D+  
Sbjct: 240 HHFQRFKEHVQNNLPRDLLTGEQFIQLRREL---ASVNGHSGDDGPPGDDLPSGIEDI-- 294

Query: 236 PSVDLVRSKAIQKYRFIGEQIYKEASQLDE----KINCFENLIRRPYFHVKPLDDIQ-LK 290
               L+      ++R I  +I++E    +E    K   FE  I+RPYFHVKPL+  Q  K
Sbjct: 295 SPAKLITEIENMRHRII--EIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQPKK 352

Query: 291 NWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRAT 350
           NW +YL F  + G  + VV L+ERC+I CA Y EFW++Y  +ME+    E   +   RA 
Sbjct: 353 NWKEYLEFEIENGTHERVVVLFERCVISCALYEEFWIKYAKYMENH-SIEGVRHVFSRAC 411

Query: 351 QIFLKRLPVIHLFNARYKEQIGDTSAARA---AFPESYIDSDSRFIEKVTFKANMERRLG 407
            + L + P+ H+  A ++EQ G+ + AR     F E  +      + +V+    +ERR G
Sbjct: 412 TVHLPKKPMAHMLWAAFEEQQGNINEARIILRTFEECVLGLAMVRLRRVS----LERRHG 467

Query: 408 NFVAACDTYKEALETA 423
           N   A    ++A++ A
Sbjct: 468 NMEEAEHLLQDAIKNA 483

Involved in pre-mRNA splicing.

Mus musculus (taxid: 10090)

>sp|Q7KRW8|PRP39_DROME Pre-mRNA-processing factor 39 OS=Drosophila melanogaster GN=CG1646 PE=1 SV=1

 Score =  116 bits (291), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 90/161 (55%), Gaps = 3/161 (1%)

Query: 30  IAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSI 89
           + E S DF  WT LL  ++N    D E     YD+FL+ +P CYGYWRKYAD++ R    
Sbjct: 372 VKEDSTDFTGWTYLLQYVDNES--DAEAAREAYDTFLSHYPYCYGYWRKYADYEKRKGIK 429

Query: 90  DKVVEVFERAVQSATYSVDVWFHYCSLSMSTF-EDPNDVRRLFKRALSFVGKDYLCHTMW 148
               +VFER +++   SVD+W HY     S   +D   VR  ++RA+   G ++    +W
Sbjct: 430 ANCYKVFERGLEAIPLSVDLWIHYLMHVKSNHGDDETFVRSQYERAVKACGLEFRSDKLW 489

Query: 149 DKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKL 189
           D YI +E   +R+  + QI+ + L  P++  + ++D+F+ L
Sbjct: 490 DAYIRWENESKRYHRVVQIYDRLLAIPTQGYNGHFDNFQDL 530

Involved in pre-mRNA splicing.

Drosophila melanogaster (taxid: 7227)

>sp|P39682|PRP39_YEAST Pre-mRNA-processing factor 39 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP39 PE=1 SV=1

 Score =  104 bits (260), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 158/350 (45%), Gaps = 74/350 (21%)

Query: 8   LESLSAEPNSPVGFGKQGLEEFIA----EGSLDFDEWTSL---LSEIENSC-----PDDI 55
           +E +   P++  G   Q L++  A       LD+ + +SL   +  IE +      P+D 
Sbjct: 9   IEDIEPRPDALRGLDTQFLQDNTALVQAYRGLDWSDISSLTQMVDVIEQTVVKYGNPNDS 68

Query: 56  EMIGL--VYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHY 113
             + L  +    L ++PL +G+W+++A  + +L  + K + V   +V+    S+++W  Y
Sbjct: 69  IKLALETILWQILRKYPLLFGFWKRFATIEYQLFGLKKSIAVLATSVKWFPTSLELWCDY 128

Query: 114 CSLSMSTFEDPND---VRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQ 170
             L++    +PN+   +R  F+ A   +GK +L H  WDK+IEFE+ Q+ W ++ +I+  
Sbjct: 129 --LNVLCVNNPNETDFIRNNFEIAKDLIGKQFLSHPFWDKFIEFEVGQKNWHNVQRIYEY 186

Query: 171 TLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVI 230
            +  P  +   ++ S+KK                                          
Sbjct: 187 IIEVPLHQYARFFTSYKK------------------------------------------ 204

Query: 231 KDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLK 290
                     +  K ++  R I   + K  + ++E I  FE+ I++P+F++  + +  L+
Sbjct: 205 ---------FLNEKNLKTTRNIDIVLRKTQTTVNE-IWQFESKIKQPFFNLGQVLNDDLE 254

Query: 291 NWHDYLSFA---EKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKG 337
           NW  YL F     K  D ++V+ +++RCLIPC  +   WM Y+ ++  K 
Sbjct: 255 NWSRYLKFVTDPSKSLDKEFVMSVFDRCLIPCLYHENTWMMYIKWLTKKN 304

Function prior to stable branch point recognition by the U1 snRNP particle to facilitate or stabilize the U1 snRNP/5'-splice site interaction. Has a direct role in the assembly or function of a catalytically active spliceosome.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1043
297740633	1195	unnamed protein product [Vitis vinifera]	0.848	0.740	0.501	0.0
359483599	1179	PREDICTED: uncharacterized protein LOC10	0.814	0.720	0.501	0.0
449459394	901	PREDICTED: pre-mRNA-processing factor 39	0.807	0.934	0.424	0.0
357519211	1215	Pre-mRNA-processing factor [Medicago tru	0.854	0.733	0.407	0.0
30694946	1036	pre-mRNA-processing factor 39 [Arabidops	0.766	0.771	0.397	1e-169
10177721	1022	unnamed protein product [Arabidopsis tha	0.768	0.784	0.395	1e-168
297794621	1035	binding protein [Arabidopsis lyrata subs	0.766	0.771	0.387	1e-166
222640468	1199	hypothetical protein OsJ_27131 [Oryza sa	0.460	0.400	0.485	1e-145
218201077	1192	hypothetical protein OsI_29060 [Oryza sa	0.460	0.402	0.479	1e-143
255557433	395	Pre-mRNA-processing protein prp39, putat	0.342	0.903	0.636	1e-134

>gi|297740633|emb|CBI30815.3| unnamed protein product [Vitis vinifera]

 Score =  919 bits (2374), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1010 (50%), Positives = 632/1010 (62%), Gaps = 125/1010 (12%)

Query: 14  EPNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCY 73
           E +  V F    L EF+A+G L FD WTSL+S IE + PDDI+ I LVYDSFL+EFPLCY
Sbjct: 2   EDDCSVDFDVLKLPEFVAKGLLGFDAWTSLISNIEKTYPDDIKKICLVYDSFLSEFPLCY 61

Query: 74  GYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKR 133
           GYWRKYADHK+RLC++DKV+EV+ERAVQSATYSV +W  YCS SMS FEDP DVRRLFKR
Sbjct: 62  GYWRKYADHKSRLCTVDKVIEVYERAVQSATYSVGLWVDYCSFSMSVFEDPFDVRRLFKR 121

Query: 134 ALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAW 193
            LSFVGKDYLCHT+WDKYIEFE+SQQ+WS LA +++ TLRFP+KKLHHYYDSFKKL    
Sbjct: 122 GLSFVGKDYLCHTLWDKYIEFELSQQQWSFLAHVYILTLRFPTKKLHHYYDSFKKLVAIC 181

Query: 194 KEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIG 253
           +EE+E   +S ME QSELV++ E   YYKDDE S +  DLLDPSV   R KA+QKY  IG
Sbjct: 182 QEEIESHGNSGMEVQSELVVDSENTTYYKDDEVSHITTDLLDPSVGSDRYKALQKYLSIG 241

Query: 254 EQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYE 313
           EQ+Y++A Q+D KI+ FE  IRRPYFHVKPLD  QL+NWH YL F E QGDFDW VKLYE
Sbjct: 242 EQLYQKACQVDAKIHGFETHIRRPYFHVKPLDVSQLENWHQYLDFVEVQGDFDWAVKLYE 301

Query: 314 RCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGD 373
           RCLIPCA+YPEFWMRYV+FME KGGREIA++ALDR+T+IFLK +P IH+FNA +KEQ GD
Sbjct: 302 RCLIPCANYPEFWMRYVEFMEIKGGREIANFALDRSTKIFLKSIPAIHVFNAWFKEQTGD 361

Query: 374 TSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLP 433
              A AAF +   +SDS FIE V  +ANM++RLGNF AA + +KEAL  A E++KFH LP
Sbjct: 362 VFGAHAAFVQYETESDSSFIENVIKEANMKKRLGNFAAASNIFKEALAIAVEKQKFHILP 421

Query: 434 LLYVQFSRLTYT---------------------------ELIKFTMVHGGRSHISIVDAV 466
            LY+ FSRL Y                            ELIKF M+HGG  HI++VDAV
Sbjct: 422 NLYIHFSRLEYMITGSVDAARDVLIDGIRCVPESKMLLEELIKFAMMHGGPRHINVVDAV 481

Query: 467 ISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVRT--A 524
           ++NA+    DV +  S +D E IS LYL+F+DLCGTI+D++ AWN+HIKLFPH +RT   
Sbjct: 482 VANAISPGTDVSQGLSAKDGEYISRLYLEFVDLCGTIYDVKKAWNRHIKLFPHCLRTMSI 541

Query: 525 YECPGRETKSLRAFIRGKRESNVASLP-QPFESEHLMPSASQDKKFSPPEKSDSESGDDA 583
           Y+ P   +K LR  + G R   +A++P  PF                       +SG D 
Sbjct: 542 YKYPATSSKPLRIAMEG-RPDIIAAMPCHPF----------------------GDSGSDH 578

Query: 584 TSLPSNQKSPL--PENHDIRSDGAEVDILLSGEA-DSSSQDRMQQVPPEAAEQHSQDACD 640
            +L   ++  L  PENHDI S+   V++ L  EA + S+Q+ +Q V P+   QH ++A +
Sbjct: 579 LALIPIEEQGLSCPENHDIHSEQV-VNVQLEPEAANKSAQEGLQLVIPKVPGQHREEASE 637

Query: 641 PEVLSLDLAHQVTNENETVQASEAFSEEDDVQREYEHESKKDLKPLSLEGLSLDPGGNDS 700
           P V   D   +  NE E+VQA  A S  +D+Q+E EHE  +D K LSLE LSL+P G +S
Sbjct: 638 PNVS--DSVVKEYNEIESVQALLALSRANDLQQEVEHEPLQDPKSLSLECLSLNPQGKES 695

Query: 701 PGSLCATSHECEAPQKTNFSHESMLKSEAPRETSLSDGSVLGASQNNNGSHFAPSSMGTQ 760
           P S+ A+SHE EAP+            EA R   +   SV    +N   S    S +GT 
Sbjct: 696 PESIPASSHEVEAPE------------EACRSNGIITESVYNTDENPPSS----SPVGTS 739

Query: 761 ASSSAPIQTRTVSPSSSAS----------------------------------------- 779
           A   A I + +V P SSAS                                         
Sbjct: 740 ADDPAEIHSESVGPLSSASPQLPTPTEELSQSLVPKSGGGKWNQTDGTDKYAQIQMSPER 799

Query: 780 HQNFIP-EAHSHPQTPANSGRNWHEQQNPDRVHRDLRFGYRGHSHKRQHQQRRFS-SQRY 837
           H+N  P EA  HPQ   N   NW +  N D+VHRD    + GHS  ++   R     Q+Y
Sbjct: 800 HKNPPPSEAVPHPQLSVNGAGNWRQMNNADKVHRDSSPRFHGHSRNKRRASRHVPLEQQY 859

Query: 838 PRNESGDQMPMNSRFPSQPLP----SQNPQAQQGSQAQSQFLHSLTA-QAWPMQNMQQQT 892
           PR++ G QM ++   P QP           +Q     Q+    +LTA  AWPMQ +QQQ 
Sbjct: 860 PRDQIGTQMLVSQGNPGQPFSWQNQQNQQGSQAQHPIQTAGQGNLTATHAWPMQIVQQQN 919

Query: 893 FASASQSEVPAQPVFYPQAQMSQYPSQSSEQQGLLQSNLAYNQMWQYYYY 942
           FASAS  +VPAQPV   QAQ+SQYP QS+EQ G +Q++ AYNQMW YYYY
Sbjct: 920 FASASSCQVPAQPV--TQAQVSQYPMQSNEQYGHMQNSQAYNQMWHYYYY 967

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483599|ref|XP_002271803.2| PREDICTED: uncharacterized protein LOC100243465 [Vitis vinifera]

 Score =  885 bits (2287), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/975 (50%), Positives = 610/975 (62%), Gaps = 125/975 (12%)

Query: 49   NSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVD 108
             +C DDI+ I LVYDSFL+EFPLCYGYWRKYADHK+RLC++DKV+EV+ERAVQSATYSV 
Sbjct: 82   GACLDDIKKICLVYDSFLSEFPLCYGYWRKYADHKSRLCTVDKVIEVYERAVQSATYSVG 141

Query: 109  VWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIF 168
            +W  YCS SMS FEDP DVRRLFKR LSFVGKDYLCHT+WDKYIEFE+SQQ+WS LA ++
Sbjct: 142  LWVDYCSFSMSVFEDPFDVRRLFKRGLSFVGKDYLCHTLWDKYIEFELSQQQWSFLAHVY 201

Query: 169  VQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSS 228
            + TLRFP+KKLHHYYDSFKKL    +EE+E   +S ME QSELV++ E   YYKDDE S 
Sbjct: 202  ILTLRFPTKKLHHYYDSFKKLVAICQEEIESHGNSGMEVQSELVVDSENTTYYKDDEVSH 261

Query: 229  VIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQ 288
            +  DLLDPSV   R KA+QKY  IGEQ+Y++A Q+D KI+ FE  IRRPYFHVKPLD  Q
Sbjct: 262  ITTDLLDPSVGSDRYKALQKYLSIGEQLYQKACQVDAKIHGFETHIRRPYFHVKPLDVSQ 321

Query: 289  LKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDR 348
            L+NWH YL F E QGDFDW VKLYERCLIPCA+YPEFWMRYV+FME KGGREIA++ALDR
Sbjct: 322  LENWHQYLDFVEVQGDFDWAVKLYERCLIPCANYPEFWMRYVEFMEIKGGREIANFALDR 381

Query: 349  ATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGN 408
            +T+IFLK +P IH+FNA +KEQ GD   A AAF +   +SDS FIE V  +ANM++RLGN
Sbjct: 382  STKIFLKSIPAIHVFNAWFKEQTGDVFGAHAAFVQYETESDSSFIENVIKEANMKKRLGN 441

Query: 409  FVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYT----------------------- 445
            F AA + +KEAL  A E++KFH LP LY+ FSRL Y                        
Sbjct: 442  FAAASNIFKEALAIAVEKQKFHILPNLYIHFSRLEYMITGSVDAARDVLIDGIRCVPESK 501

Query: 446  ----ELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCG 501
                ELIKF M+HGG  HI++VDAV++NA+    DV +  S +D E IS LYL+F+DLCG
Sbjct: 502  MLLEELIKFAMMHGGPRHINVVDAVVANAISPGTDVSQGLSAKDGEYISRLYLEFVDLCG 561

Query: 502  TIHDIRNAWNQHIKLFPHTVRTA--YECPGRETKSLRAFIRGKRESNVASLP-QPFESEH 558
            TI+D++ AWN+HIKLFPH +RT   Y+ P   +K LR  + G R   +A++P  PF    
Sbjct: 562  TIYDVKKAWNRHIKLFPHCLRTMSIYKYPATSSKPLRIAMEG-RPDIIAAMPCHPF---- 616

Query: 559  LMPSASQDKKFSPPEKSDSESGDDATSLPSNQKSPL--PENHDIRSDGAEVDILLSGEA- 615
                               +SG D  +L   ++  L  PENHDI S+   V++ L  EA 
Sbjct: 617  ------------------GDSGSDHLALIPIEEQGLSCPENHDIHSEQV-VNVQLEPEAA 657

Query: 616  DSSSQDRMQQVPPEAAEQHSQDACDPEVLSLDLAHQVTNENETVQASEAFSEEDDVQREY 675
            + S+Q+ +Q V P+   QH ++A +P V   D   +  NE E+VQA  A S  +D+Q+E 
Sbjct: 658  NKSAQEGLQLVIPKVPGQHREEASEPNVS--DSVVKEYNEIESVQALLALSRANDLQQEV 715

Query: 676  EHESKKDLKPLSLEGLSLDPGGNDSPGSLCATSHECEAPQKTNFSHESMLKSEAPRETSL 735
            EHE  +D K LSLE LSL+P G +SP S+ A+SHE EAP+            EA R   +
Sbjct: 716  EHEPLQDPKSLSLECLSLNPQGKESPESIPASSHEVEAPE------------EACRSNGI 763

Query: 736  SDGSVLGASQNNNGSHFAPSSMGTQASSSAPIQTRTVSPSSSAS---------------- 779
               SV    +N   S    S +GT A   A I + +V P SSAS                
Sbjct: 764  ITESVYNTDENPPSS----SPVGTSADDPAEIHSESVGPLSSASPQLPTPTEELSQSLVP 819

Query: 780  -------------------------HQNFIP-EAHSHPQTPANSGRNWHEQQNPDRVHRD 813
                                     H+N  P EA  HPQ   N   NW +  N D+VHRD
Sbjct: 820  KSGGGKWNQTDGTDKYAQIQMSPERHKNPPPSEAVPHPQLSVNGAGNWRQMNNADKVHRD 879

Query: 814  LRFGYRGHSHKRQHQQRRFS-SQRYPRNESGDQMPMNSRFPSQPLP----SQNPQAQQGS 868
                + GHS  ++   R     Q+YPR++ G QM ++   P QP           +Q   
Sbjct: 880  SSPRFHGHSRNKRRASRHVPLEQQYPRDQIGTQMLVSQGNPGQPFSWQNQQNQQGSQAQH 939

Query: 869  QAQSQFLHSLTA-QAWPMQNMQQQTFASASQSEVPAQPVFYPQAQMSQYPSQSSEQQGLL 927
              Q+    +LTA  AWPMQ +QQQ FASAS  +VPAQPV   QAQ+SQYP QS+EQ G +
Sbjct: 940  PIQTAGQGNLTATHAWPMQIVQQQNFASASSCQVPAQPV--TQAQVSQYPMQSNEQYGHM 997

Query: 928  QSNLAYNQMWQYYYY 942
            Q++ AYNQMW YYYY
Sbjct: 998  QNSQAYNQMWHYYYY 1012

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459394|ref|XP_004147431.1| PREDICTED: pre-mRNA-processing factor 39-like [Cucumis sativus]

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/958 (42%), Positives = 559/958 (58%), Gaps = 116/958 (12%)

Query: 2   EVQISNLESLSAEP---NSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMI 58
           + Q+ N     A+P   +S VG  +  L E + +  LDF+EWTSL+SEIE   PD IE I
Sbjct: 4   DFQLLNNSGTKAKPIESDSAVGLDESKLYEVVPKCGLDFEEWTSLISEIERKYPDVIEKI 63

Query: 59  GLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSM 118
            LVYDSFL+EFPLC+GYWRKYA HK RLCS+D+VV+VFE+AVQSATYSV +W  YCS S+
Sbjct: 64  SLVYDSFLSEFPLCHGYWRKYASHKTRLCSVDRVVDVFEQAVQSATYSVGIWVDYCSFSI 123

Query: 119 STFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKK 178
           S FEDP+D+RRLFKRA+SFVGKDYL +++WDKYIEFE+SQQ+W SLA I++QTLRFP+KK
Sbjct: 124 SAFEDPSDIRRLFKRAISFVGKDYLSYSLWDKYIEFEVSQQQWDSLALIYIQTLRFPTKK 183

Query: 179 LHHYYDSFKKLAGAWKEELE----CESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLL 234
           L +Y++SF+KL  + KE ++    C +   MEF++    + EVP    D E SSVIKDLL
Sbjct: 184 LSYYHNSFRKLTASLKENIQSDTGCNNSMPMEFEASP--DSEVPTKCTDTELSSVIKDLL 241

Query: 235 DPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHD 294
           D S    R  ++ KY   GE++Y EA QL EKI  FE+ IRR YFHVKPLDD QLKNWH 
Sbjct: 242 DLSAGTTRYSSLLKYVHAGEKLYDEACQLKEKIMHFEDKIRRTYFHVKPLDDGQLKNWHS 301

Query: 295 YLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFL 354
           YL   E  GDFDW VKLYERCLIPCA YPEFWMRYV+F+E+KGGRE+A +AL+RAT+ FL
Sbjct: 302 YLDLVEMYGDFDWAVKLYERCLIPCASYPEFWMRYVEFVETKGGRELAMFALERATKTFL 361

Query: 355 KRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACD 414
           K++PVIHLFN+R+KEQI D S ARAAF +   D DS+F+E +  KANME+R+G    A +
Sbjct: 362 KKVPVIHLFNSRFKEQIRDLSGARAAFLQLDGDLDSKFVENIILKANMEKRMGKSTEAFN 421

Query: 415 TYKEALETAAEQRKFHTLPLLYVQFSRLTYT----------------------------- 445
            Y++AL+ A  ++K   LP LYV FSRL +                              
Sbjct: 422 IYRDALQMALMKKKLDVLPALYVHFSRLKHMVWNSCFQITGSVDAAMEVLIDGIRNVPLC 481

Query: 446 -----ELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLC 500
                ELI F MVHG    I++VD +++NA+  + DV + +S +D EDIS+LYL+ +DLC
Sbjct: 482 KLLLEELINFVMVHGVPKLINLVDPIVANAISLKADVSQGWSEQDREDISTLYLKAVDLC 541

Query: 501 GTIHDIRNAWNQHIKLFPHTVRTA-YECPGRETKSLRAFIRGKRESNVASLPQPFESEHL 559
           GTIHD+   WN+HIKLFP ++R   Y+ P    ++++  + GK+ ++     QP   +++
Sbjct: 542 GTIHDVMKVWNRHIKLFPQSIRAMPYKDPIPGIEAIKKTMGGKQTADSTVTNQPIRDDNV 601

Query: 560 MPSASQDKKFSPPEKSDSESGDDATSLPSNQKSP-------LPENHDIRSDGAEVDILLS 612
            PS        PP + + ES  D  +  ++Q S        L   H+I    + +D +  
Sbjct: 602 NPSN------QPPLEENKESLLDNQNFKNDQSSNGNEPTSCLLVKHNIAMKESTIDKINL 655

Query: 613 GEADSSSQDRMQQVPPEAAEQHSQDACDPEVLSLDLAHQVTNENETVQASEAFSEEDDVQ 672
           G+++  +++R Q   P+  E++                     N+   A      ++  +
Sbjct: 656 GDSEICAEEREQVNSPKVLERYGSGG-----------------NQIESAQMPMPMDNSKK 698

Query: 673 REYEHESKKDLKPLSLEGLSLDPGGNDSPGSLCATSHECEAPQKTNFSHESMLKSEAPRE 732
            EY       LK LS++ LSL+   ND         HE E P + + S ES+        
Sbjct: 699 DEYGDALGVTLKNLSIKSLSLNAKNNDKINLPSKACHEGEPPLENSLSSESV-------- 750

Query: 733 TSLSDGSVLGASQNNNGSHFAPSSMGTQASSSAPIQTRTVSPSSSASHQNFIPEAHSHPQ 792
            S +D  V+  +  N GS           SSS  I     SPSS  S     P   +HPQ
Sbjct: 751 -SNTDEEVVMHNPLNVGS-----------SSSIQISNEGASPSSFPS-----PGKPTHPQ 793

Query: 793 TPA------NSGRNWHEQQNPDRVHRDLRFGYRGHSHKRQHQQRRFSSQRYPRNESGDQM 846
                       R WH +++   +H DL+  ++GHS +R H+  + S Q Y   +SG Q 
Sbjct: 794 VHTQFHMHETGDRKWHHKRHAGNLHHDLQHDFQGHSRRRPHRTWKDSPQDYRGMQSG-QT 852

Query: 847 PMNSRFPSQPLPSQNPQAQQGSQAQSQFLHSLTAQAWPMQNMQQQTFASASQSEVPAQ 904
             +  + S+ + SQ PQ ++ SQ  +   H  +AQ       QQQ F + SQS++P+Q
Sbjct: 853 SGDQDYTSETIASQKPQVERISQDHN---HIQSAQ-------QQQNFPTTSQSQLPSQ 900

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519211|ref|XP_003629894.1| Pre-mRNA-processing factor [Medicago truncatula] gi|355523916|gb|AET04370.1| Pre-mRNA-processing factor [Medicago truncatula]

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/1023 (40%), Positives = 561/1023 (54%), Gaps = 132/1023 (12%)

Query: 17   SPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCP--------------------DDIE 56
            SP       LEE I++GSLDFDEW SL+++IE   P                    D++E
Sbjct: 9    SPASNDNLELEEVISKGSLDFDEWVSLIADIEKIYPNELIAIVGFTSLIKLELFLQDNVE 68

Query: 57   MIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSL 116
             I +VY  FL+EFPLC+GYWRKYA H  +L ++DKVVEVFE+AV +ATYSV +W  YCS 
Sbjct: 69   KICVVYKHFLSEFPLCHGYWRKYAAHMTQLSTMDKVVEVFEQAVSAATYSVGMWVDYCSF 128

Query: 117  SMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPS 176
             MS+FED +D+RRLFKRA+SFVGKDYLCHT+WD+YI FE SQQ+W+ LA I++QTL+FP+
Sbjct: 129  GMSSFEDASDIRRLFKRAISFVGKDYLCHTLWDRYIHFEFSQQQWTCLAHIYIQTLKFPT 188

Query: 177  KKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYY--KDDETSSVIKDLL 234
            KKLH YYDSFKKL    +E +     S  E QSE  L+GE+P      DDE   VIKD++
Sbjct: 189  KKLHQYYDSFKKLLTFLEEGITSRESSPKESQSEPCLDGEIPMTMCRDDDEIYCVIKDMV 248

Query: 235  DPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHD 294
            D  V L  S A++KYR IGEQ+Y  A +L  KI+ FE  I+R YF  +PLD  QL+NWH 
Sbjct: 249  DSPVGLTSSTALKKYRIIGEQLYHNACELYSKISSFEANIQRYYFDFRPLDANQLQNWHA 308

Query: 295  YLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFL 354
            YL F E  GDFDW VKLYERCLI CA+YP++WMRY DFME+KGGREIA+Y+LDRAT+I+L
Sbjct: 309  YLDFIELHGDFDWAVKLYERCLIVCANYPDYWMRYADFMEAKGGREIANYSLDRATEIYL 368

Query: 355  KRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACD 414
            K +P IHLFNAR+KEQIGD  AARAA+     ++DS F+E V  KANME+RLGN  +A  
Sbjct: 369  KSVPAIHLFNARFKEQIGDVLAARAAYIHRCKETDSDFVENVISKANMEKRLGNMESAFS 428

Query: 415  TYKEALETAAEQRKFHTLPLLYVQFSRLTYT----------------------------- 445
             YKEALE AA + K   LP+LYV FSRL +                              
Sbjct: 429  IYKEALEIAAAEEKQPALPILYVHFSRLKFMVGSLCLSSTNDVDAARVVLIDGIRTLPQN 488

Query: 446  -----ELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLC 500
                 EL+KF+M+HGG  HI  +D++I+ A+  R +  +  S ED EDIS+LYL+F+D C
Sbjct: 489  KLLLEELMKFSMMHGGAKHIDELDSIIAGAISPRANGSQGLSAEDAEDISNLYLEFVDYC 548

Query: 501  GTIHDIRNAWNQHIKLFPHTVRTAYECPGRETKSLRAFIRGKRESNVASLP--QPFE--- 555
            GTIHD+R A N+HI+L P + R        ++K     I+ KRE    ++P  +P +   
Sbjct: 549  GTIHDVRRALNRHIRLCPGSARIDLRQQSIKSKRPLNLIKDKREEISVAMPNQEPRDPSS 608

Query: 556  --SEHLMPSASQDKKFSPPEKSDSESGDDATSLP----------SNQKSPLPENHDIRSD 603
               +H++ S   +       +SD +  DDA  LP             +    E+ D   D
Sbjct: 609  NLEDHIIRSYDTNTARLQTVESDDKVEDDARELPLLVSEEPRDIDTARLQTMESDDKAED 668

Query: 604  GAEVDILLSGEADSSSQD---RMQQVPPEAAEQHS-------QDACDPEVLSLDLAHQVT 653
             A  D+ LS   +  + D    +  +    A++ S       +D  + ++ S +L HQ+ 
Sbjct: 669  NAR-DLSLSVSEEPRNNDPERNLSSIDLVGAKEESTKIKNFKKDCSESDISSENLLHQIA 727

Query: 654  NENETVQASEAFSEEDDVQREYEHESK-KDLKPLSLEGLSLDPGGNDSPGS-LCATSHEC 711
              N+  QA +A S E  V  + + E K ++LKPLS+    L+   N  P S L A+  EC
Sbjct: 728  IVNQPSQALQASSNEKSVSSQGKCELKTEELKPLSVTSAPLNTLVNTCPDSGLVASQVEC 787

Query: 712  EAPQKTNFSHESMLKSEAPRETSLSDGSVLGASQNNNGSHFAPSSMGTQASSSAPIQTRT 771
            E                 P   + +  +V+G    N  +    SS  TQ S         
Sbjct: 788  ET---------------IPESCNSNSRAVVGGYTANRYN----SSRSTQDSDYPRTHVER 828

Query: 772  VSPSSSASHQNFIPEAHSHPQTPANSGRNWHEQQNPDRVHRDLRFGYRG----------H 821
              P SS+   + +      P+   N G N    +N ++  R  ++G RG          +
Sbjct: 829  NRPYSSSHRDHNMKRPLLPPRFSRNGGGNRDPIKNDNKFRRAPKYGNRGRGGPKYGNREY 888

Query: 822  SHKRQHQQRRFSSQRYPRNESGDQMPMNSRFPSQPLPSQNP-QAQQGSQAQSQFLHS--- 877
              + +HQ R  S Q+    E G Q      FP  P  SQ+  Q QQ +Q Q QF  +   
Sbjct: 889  PRRNEHQHRSLSPQQIHLAERGAQ------FPVTPGCSQSALQVQQCNQRQDQFQATATT 942

Query: 878  ---LTAQAWPMQNMQQQTFASASQSEVPAQPVFYPQAQMSQYPSQSSEQQGLLQSNLAYN 934
               +T Q+WP+QN+Q Q   S  QS++P             +  Q SEQ G +Q    YN
Sbjct: 943  AGFVTPQSWPIQNVQIQN--SLPQSQLPVSTT--SNVLQHGHAMQGSEQYGYMQKGQDYN 998

Query: 935  QMW 937
            QMW
Sbjct: 999  QMW 1001

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30694946|ref|NP_199452.2| pre-mRNA-processing factor 39 [Arabidopsis thaliana] gi|332007996|gb|AED95379.1| pre-mRNA-processing factor 39 [Arabidopsis thaliana]

 Score =  601 bits (1549), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 383/963 (39%), Positives = 521/963 (54%), Gaps = 164/963 (17%)

Query: 26  LEEFIAEGSLDFDEWTSLLSEIEN-SCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKA 84
           L+E  + G+LDFDEWT L+SEIE  S PDDIE + LVYD+FL EFPLC+GYWRKYA HK 
Sbjct: 34  LKETFSSGALDFDEWTLLISEIETTSFPDDIEKLCLVYDAFLLEFPLCHGYWRKYAYHKI 93

Query: 85  RLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLC 144
           +LC+++  VEVFERAVQ+ATYSV VW  YC+ +++ +EDP+DV RLF+R LSF+GKDY C
Sbjct: 94  KLCTLEDAVEVFERAVQAATYSVAVWLDYCAFAVAAYEDPHDVSRLFERGLSFIGKDYSC 153

Query: 145 HTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSA 204
            T+WDKYIE+ + QQ+WSSLA ++++TL++PSKKL  YY +F+K+A + KE+++C  D  
Sbjct: 154 CTLWDKYIEYLLGQQQWSSLANVYLRTLKYPSKKLDLYYKNFRKIAASLKEKIKCRIDVN 213

Query: 205 MEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLD 264
            +  S+ + E  V   + D+E S V+++L+ PS     SKA+  Y  IGEQ Y+++ QL 
Sbjct: 214 GDLSSDPMEEDLVHTRHTDEEISIVVRELMGPSSSSAVSKALHTYLSIGEQFYQDSRQLM 273

Query: 265 EKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPE 324
           EKI+CFE  IRRPYFHVKPLD  QL NWH YLSF E  GDFDW + LYERCLIPCA+Y E
Sbjct: 274 EKISCFETQIRRPYFHVKPLDTNQLDNWHAYLSFGETYGDFDWAINLYERCLIPCANYTE 333

Query: 325 FWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPES 384
           FW RYVDF+ESKGGRE+A++AL RA+Q F+K   VIHLFNAR+KE +GD SAA  A    
Sbjct: 334 FWFRYVDFVESKGGRELANFALARASQTFVKSASVIHLFNARFKEHVGDASAASVALSRC 393

Query: 385 YIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEAL-ETAAEQRKFHTLPLLYVQFSRLT 443
             +    F+E VT KANME+RLGNF AA  TY+EAL +T   +    T   LYVQFSRL 
Sbjct: 394 GEELGFGFVENVTKKANMEKRLGNFEAAVTTYREALNKTLIGKENLETTARLYVQFSRLK 453

Query: 444 YT---------------------------ELIKFTMVHGGRSHISIVDAVISNALYSRPD 476
           Y                            EL++  M+HGG   + ++D +I   L  + D
Sbjct: 454 YVITNSADDAAQILLEGNENVPHCKLLLEELMRLLMMHGGSRQVDLLDPIIDKELSHQAD 513

Query: 477 VLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVRTAYECPGRETKSLR 536
                S ED E+IS+LY++F+DL GTIHD+R A  +HIKLFPH              S R
Sbjct: 514 SSDGLSAEDKEEISNLYMEFIDLSGTIHDVRKALGRHIKLFPH--------------SAR 559

Query: 537 AFIRGKRESNVASLPQPFESEHLMPSASQDKKFSPPEKSDSESGDDATSLPSNQKSPLPE 596
           A +RG R                 PS +  ++                 +   +K+    
Sbjct: 560 AKLRGSR-----------------PSGNLFREL----------------IQRREKTRERL 586

Query: 597 NHDIRSDGAEVDILLSGEADSSSQDRMQQVPPEAAEQHSQDACDPEVLSLDLAHQVTNE- 655
           N D          LL+ +  SS  D     PP+  ++ S D+   +      A  V  E 
Sbjct: 587 NQD----------LLTNKGISSIVDS----PPKEKKESSLDSYGTQSKDAVRADYVNTEP 632

Query: 656 NETVQASEAFSEEDD--VQREYEHESKKDLKPLSLEGLSLDPGGNDSPGSLCATSHECEA 713
           N+    S    E +D  ++RE   ES+ DL      GL  + GG          SHE   
Sbjct: 633 NQGCLTSGHLVEGNDNVIERETLCESQSDLS----MGLKANEGGK--------RSHEVSL 680

Query: 714 PQKTNFSHESMLKSEAPRETSLSDGSVLGASQNNNGSHFAPSSMGTQASSSAPIQTRTVS 773
           P + +  H  + K                       +HF+ +S+ T  S +  IQ     
Sbjct: 681 PIQASPEHGFVTKQ----------------------AHFSSNSVDTVKSDAIVIQPSGSQ 718

Query: 774 PSSSASHQNFIPEAHSHPQTPANSGRNWHEQQNPDRVHRDLRFGYRGHSHKRQHQQRRFS 833
              S   Q  + +          +GRN + +++ +++HRD     +  S +R  Q   +S
Sbjct: 719 SPQSYQSQESLRQ----------TGRNRYHRRDLNQMHRD----SKPRSQERPPQM-PYS 763

Query: 834 SQRYPRNESGDQMPM---NSRFPSQPLPSQNPQAQ-QGSQAQSQFLHSL--TAQAWPMQN 887
                R   G  M     ++R   Q   SQNPQ Q Q S  Q   +H +  T+ A+P   
Sbjct: 764 PVGTGREILGQHMAFTHQDNRVALQSSTSQNPQNQFQNSALQ---MHPVVQTSNAYPQSQ 820

Query: 888 MQ-QQTFASASQSEVP----------AQPVF-YPQAQMSQYPSQSS-EQQGLLQSNLAYN 934
           +  Q    S  +S+ P           Q  F YPQ Q+ Q P QS+ +Q+G +QS+ AYN
Sbjct: 821 IHGQHMIVSPPESQNPQNQCQNSTSQVQTSFAYPQTQIPQNPVQSNYQQEGQMQSHEAYN 880

Query: 935 QMW 937
           QMW
Sbjct: 881 QMW 883

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10177721|dbj|BAB11095.1| unnamed protein product [Arabidopsis thaliana]

 Score =  600 bits (1547), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 380/960 (39%), Positives = 517/960 (53%), Gaps = 158/960 (16%)

Query: 26  LEEFIAEGSLDFDEWTSLLSEIEN-SCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKA 84
           L+E  + G+LDFDEWT L+SEIE  S PDDIE + LVYD+FL EFPLC+GYWRKYA HK 
Sbjct: 34  LKETFSSGALDFDEWTLLISEIETTSFPDDIEKLCLVYDAFLLEFPLCHGYWRKYAYHKI 93

Query: 85  RLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLC 144
           +LC+++  VEVFERAVQ+ATYSV VW  YC+ +++ +EDP+DV RLF+R LSF+GKDY C
Sbjct: 94  KLCTLEDAVEVFERAVQAATYSVAVWLDYCAFAVAAYEDPHDVSRLFERGLSFIGKDYSC 153

Query: 145 HTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSA 204
            T+WDKYIE+ + QQ+WSSLA ++++TL++PSKKL  YY +F+K+A + KE+++C  D  
Sbjct: 154 CTLWDKYIEYLLGQQQWSSLANVYLRTLKYPSKKLDLYYKNFRKIAASLKEKIKCRIDVN 213

Query: 205 MEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLD 264
            +  S+ + E  V   + D+E S V+++L+ PS     SKA+  Y  IGEQ Y+++ QL 
Sbjct: 214 GDLSSDPMEEDLVHTRHTDEEISIVVRELMGPSSSSAVSKALHTYLSIGEQFYQDSRQLM 273

Query: 265 EKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPE 324
           EKI+CFE  IRRPYFHVKPLD  QL NWH YLSF E  GDFDW + LYERCLIPCA+Y E
Sbjct: 274 EKISCFETQIRRPYFHVKPLDTNQLDNWHAYLSFGETYGDFDWAINLYERCLIPCANYTE 333

Query: 325 FWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPES 384
           FW RYVDF+ESKGGRE+A++AL RA+Q F+K   VIHLFNAR+KE +GD SAA  A    
Sbjct: 334 FWFRYVDFVESKGGRELANFALARASQTFVKSASVIHLFNARFKEHVGDASAASVALSRC 393

Query: 385 YIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEAL-ETAAEQRKFHTLPLLYVQFSRLT 443
             +    F+E VT KANME+RLGNF AA  TY+EAL +T   +    T   LYVQFSRL 
Sbjct: 394 GEELGFGFVENVTKKANMEKRLGNFEAAVTTYREALNKTLIGKENLETTARLYVQFSRLK 453

Query: 444 YT---------------------------ELIKFTMVHGGRSHISIVDAVISNALYSRPD 476
           Y                            EL++  M+HGG   + ++D +I   L  + D
Sbjct: 454 YVITNSADDAAQILLEGNENVPHCKLLLEELMRLLMMHGGSRQVDLLDPIIDKELSHQAD 513

Query: 477 VLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVRTAYECPGRETKSLR 536
                S ED E+IS+LY++F+DL GTIHD+R A  +HIKLFPH              S R
Sbjct: 514 SSDGLSAEDKEEISNLYMEFIDLSGTIHDVRKALGRHIKLFPH--------------SAR 559

Query: 537 AFIRGKRESNVASLPQPFESEHLMPSASQDKKFSPPEKSDSESGDDATSLPSNQKSPLPE 596
           A +RG R                 PS +  ++                 +   +K+    
Sbjct: 560 AKLRGSR-----------------PSGNLFREL----------------IQRREKTRERL 586

Query: 597 NHDIRSDGAEVDILLSGEADSSSQDRMQQVPPEAAEQHSQDACDPEVLSLDLAHQVTNE- 655
           N D          LL+ +  SS  D     PP+  ++ S D+   +      A  V  E 
Sbjct: 587 NQD----------LLTNKGISSIVDS----PPKEKKESSLDSYGTQSKDAVRADYVNTEP 632

Query: 656 NETVQASEAFSEEDD--VQREYEHESKKDLKPLSLEGLSLDPGGNDSPGSLCATSHECEA 713
           N+    S    E +D  ++RE   ES+ DL      GL  + GG          SHE   
Sbjct: 633 NQGCLTSGHLVEGNDNVIERETLCESQSDLS----MGLKANEGGK--------RSHEVSL 680

Query: 714 PQKTNFSHESMLKSEAPRETSLSDGSVLGASQNNNGSHFAPSSMGTQASSSAPIQTRTVS 773
           P + +  H  + K                       +HF+ +S+ T  S +  IQ     
Sbjct: 681 PIQASPEHGFVTKQ----------------------AHFSSNSVDTVKSDAIVIQPSGSQ 718

Query: 774 PSSSASHQNFIPEAHSHPQTPANSGRNWHEQQNPDRVHRDLRFGYRGHSHKRQHQQRRFS 833
              S   Q  + +          +GRN + +++ +++HRD     +  S +R  Q   +S
Sbjct: 719 SPQSYQSQESLRQ----------TGRNRYHRRDLNQMHRD----SKPRSQERPPQM-PYS 763

Query: 834 SQRYPRNESGDQMPM---NSRFPSQPLPSQNPQAQQGSQAQSQFLHSLTAQAWPMQNMQ- 889
                R   G  M     ++R   Q   SQNPQ Q  + A        T+ A+P   +  
Sbjct: 764 PVGTGREILGQHMAFTHQDNRVALQSSTSQNPQNQFQNSALQMHPVVQTSNAYPQSQIHG 823

Query: 890 QQTFASASQSEVP----------AQPVF-YPQAQMSQYPSQSS-EQQGLLQSNLAYNQMW 937
           Q    S  +S+ P           Q  F YPQ Q+ Q P QS+ +Q+G +QS+ AYNQMW
Sbjct: 824 QHMIVSPPESQNPQNQCQNSTSQVQTSFAYPQTQIPQNPVQSNYQQEGQMQSHEAYNQMW 883

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297794621|ref|XP_002865195.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297311030|gb|EFH41454.1| binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  592 bits (1527), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 373/962 (38%), Positives = 505/962 (52%), Gaps = 163/962 (16%)

Query: 26  LEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKAR 85
           L+E  + G+LDFDEW  L+SEIE S PDDIE + LVYD+FL EFPLC+GYWRKYA HK +
Sbjct: 34  LQETFSSGALDFDEWILLISEIETSFPDDIEKLCLVYDAFLLEFPLCHGYWRKYAYHKIK 93

Query: 86  LCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCH 145
           LC+ +  +EVFERAVQ+ATYSV VW  YC+ +++ +EDP+DV R F+R LSFVGKDY C 
Sbjct: 94  LCTSEDALEVFERAVQAATYSVAVWLDYCAFAVAAYEDPHDVSRSFERGLSFVGKDYSCC 153

Query: 146 TMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAM 205
            +WDKYIE+ + QQ+WSSLA ++++TLR+PSKKL  YY +F+K+  + KE+++C      
Sbjct: 154 NLWDKYIEYLMGQQQWSSLAHLYLRTLRYPSKKLDLYYKNFRKIVASLKEKIKCRIHVNG 213

Query: 206 EFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDE 265
           +  S+ + E  V   + D+E S V++DL+ PS     SKA+  Y  IGEQ Y+++ QL E
Sbjct: 214 DLSSDPMEEDLVLTRHTDEEISIVVRDLMGPSSSSAVSKALHAYWSIGEQFYQDSQQLME 273

Query: 266 KINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEF 325
           KI+CFE  IRRPYFHV PLD  QL NWH YLSFAE  GDFDW + LYERCLIPCA+Y EF
Sbjct: 274 KISCFETQIRRPYFHVNPLDTNQLDNWHAYLSFAETYGDFDWAIHLYERCLIPCANYTEF 333

Query: 326 WMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESY 385
           W RYVDF+ESKGGRE+A++AL RA+Q F+K   VIHLFNAR+KE +GD SAA  A     
Sbjct: 334 WFRYVDFVESKGGRELANFALARASQTFVKNASVIHLFNARFKEHVGDASAASVALSRCG 393

Query: 386 IDSDSRFIEKVTFKANMERRLGNFVAACDTYKEAL-ETAAEQRKFHTLPLLYVQFSRLTY 444
            +     +E VT KANMERRLGNF  A  TY+EAL +T   +    T  LLYVQFSRL Y
Sbjct: 394 EELGFVLVENVTKKANMERRLGNFEGAVTTYREALNKTLIGKENLETTALLYVQFSRLKY 453

Query: 445 TE----------LIK-----------------FTMVHGGRSHISIVDAVISNALYSRPDV 477
                       LI+                   M+HGG   + ++D++I   +  + D 
Sbjct: 454 MITNSADEAAQILIEGNEKVPHCKLLLEELIRLLMMHGGSRGVDLLDSIIDKEISHQEDS 513

Query: 478 LKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVRTAYECPGRETKSLRA 537
               S ED E+IS+LY++F+DL GTIHD+R A  +HIKLFPH+ R           S R 
Sbjct: 514 SDGLSAEDKEEISNLYMEFIDLSGTIHDVRKALGRHIKLFPHSARAKLHGSRPSGNSFRE 573

Query: 538 FIRGKRESNVASLPQPFESEHLMPSASQDKKFSPPEKSDSESGDDATSLPSNQKSPLPEN 597
            I+ +RE     L                                              N
Sbjct: 574 LIQ-RREKTRDCL----------------------------------------------N 586

Query: 598 HDIRSDGAEVDILLSGEADSSSQDRMQ-QVPPEAAEQHSQDACDPEVLSLDLAHQVTNEN 656
            D+ ++       +S   DS+ +++ +  + P+ A+  S+DA   + ++       T  N
Sbjct: 587 QDLLTNKG-----ISSTVDSTPKEKKESSLDPDGAQ--SKDAVRADYVN-------TEPN 632

Query: 657 ETVQASEAFSEEDD--VQREYEHESKKDLKPLSLEGLSLDPGGNDSPGSLCATSHECEAP 714
           +   AS    E  D   +RE   ES+ DL      GL  D GG          S E   P
Sbjct: 633 QGCLASGHLVERKDNVAEREDLWESQSDLS----MGLKADDGGE--------RSREVSLP 680

Query: 715 QKTNFSHESMLKSEAPRETSLSDGSVLGASQNNNGSHFAPSSMGTQASSSAPIQTRTVSP 774
            +    H  + K                       +HF+ SS+ T  S +  IQ      
Sbjct: 681 IQATPKHGFVTKQ----------------------AHFSSSSVDTVKSDAIVIQPSGSQS 718

Query: 775 SSSASHQNFIPEAHSHPQTPANSGRNWHEQQNPDRVHRDLRFGYRGHSHKRQHQQRRFSS 834
             S   Q  + +          +GRN + +++ ++ HRD +   R      +  Q  +S 
Sbjct: 719 PQSYQSQESLRQ----------TGRNRYPRRDLNQTHRDSKPRSR-----ERPPQMSYSP 763

Query: 835 QRYPRNESGDQM---PMNSRFPSQPLPSQNPQAQQGSQAQSQFLHSLTAQAWPM------ 885
               R   G  M   P ++R   Q   S+NPQ Q  + A        T+ A+P       
Sbjct: 764 VGTGREIPGQHMGVAPRDNRAALQSSISRNPQNQFHNSALQMHPVVQTSNAYPQTQILGQ 823

Query: 886 ---------QNMQQQTFASASQSEVPAQPVFYPQAQMSQYPSQSS-EQQGLLQSNLAYNQ 935
                    QN Q Q   S SQ +       YPQ Q+ Q P QS+ +Q+G +QS+ AYNQ
Sbjct: 824 HMIVLPPDSQNPQNQYQNSTSQVQT---SFAYPQTQIPQNPVQSNYQQEGQMQSHEAYNQ 880

Query: 936 MW 937
           MW
Sbjct: 881 MW 882

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222640468|gb|EEE68600.1| hypothetical protein OsJ_27131 [Oryza sativa Japonica Group]

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 250/515 (48%), Positives = 336/515 (65%), Gaps = 35/515 (6%)

Query: 36  DFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEV 95
           DFD W SL+   E +  +DIE+I LVY SFL EFPLCYGYW KYA HKARLC+  +V EV
Sbjct: 50  DFDAWVSLIKAAEETSMNDIEVIDLVYHSFLLEFPLCYGYWIKYAAHKARLCTNKQVEEV 109

Query: 96  FERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFE 155
           +E+AVQ+  +S+D+W  YC  +M T+E+P  +RRLF+RALS VGKDYLC+ +WDKYIEFE
Sbjct: 110 YEQAVQAVPHSIDLWVSYCGFAMCTYEEPAHIRRLFERALSLVGKDYLCYHLWDKYIEFE 169

Query: 156 ISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEG 215
            SQ++   LA I++ TL+FP+KKL  YY+SF+KL    + E      S+   ++  V++ 
Sbjct: 170 KSQKQLIQLATIYIDTLKFPTKKLRRYYESFRKLVTLMEHEAAGAERSSENLRTLEVIKA 229

Query: 216 EVPAYYKDDETSSVIK--DLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENL 273
           E      D E  + IK   LLD     +R+ A+++Y   GE +Y+ +S++D++I+CFE  
Sbjct: 230 E------DSEVDASIKISALLDEHSGHLRADAVKQYLLSGESLYQRSSKIDKEISCFEAS 283

Query: 274 IRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFM 333
           I+RP+FHVKPLDD QL+NWH YL F EK+GDFDW VKLYERCLIPCA+Y EFW+RY +F+
Sbjct: 284 IKRPFFHVKPLDDDQLENWHRYLDFVEKKGDFDWAVKLYERCLIPCANYSEFWIRYAEFV 343

Query: 334 ESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFI 393
           ++KGGREIASYAL RA+  F+K +P  H++ A +KEQIGD   AR+ F E   +  S F 
Sbjct: 344 DAKGGREIASYALGRASSYFVKGVPTFHMYYAMFKEQIGDAQGARSLFIEGSNNLTSNFC 403

Query: 394 EKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYT-------- 445
             +   ANME+R+GN  AA + Y+ A++ A  Q+    LP LY  F++  Y         
Sbjct: 404 ANINRLANMEKRMGNTKAASEIYETAIQDAM-QKNVKILPDLYTNFAQFKYAVNHNISEA 462

Query: 446 --------------ELIK----FTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVE 487
                          LIK    F   HGG + I I+D+VISNA+    D+  V S ED E
Sbjct: 463 KEVFVEGIKQAPCKALIKGFMQFMSTHGGPTEIPILDSVISNAVVPGSDISTVLSREDRE 522

Query: 488 DISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVR 522
           DIS L+L+F+DL G + D+R AW +H KLFPH  R
Sbjct: 523 DISLLFLEFVDLYGDVRDLRKAWARHSKLFPHNTR 557

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218201077|gb|EEC83504.1| hypothetical protein OsI_29060 [Oryza sativa Indica Group]

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 247/515 (47%), Positives = 336/515 (65%), Gaps = 35/515 (6%)

Query: 36  DFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEV 95
           DFD+W SL+   E +  +DIE+I LVY +FL EFPL YGYW KYA HKARLC+  +V EV
Sbjct: 48  DFDDWVSLIKAAEETSMNDIEVIDLVYHNFLLEFPLFYGYWIKYAAHKARLCTNKEVEEV 107

Query: 96  FERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFE 155
           +E+AVQ+  +S+D+W  YC  +M T+E+P  +RRLF+RALS VGKDYLC+ +WDKYIEFE
Sbjct: 108 YEQAVQAVPHSIDLWVSYCGFAMCTYEEPGHIRRLFERALSLVGKDYLCYHLWDKYIEFE 167

Query: 156 ISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEG 215
            SQ++   LA I++ TL+FP+KKL  YY+SF+KL    + E      S+   ++  V++ 
Sbjct: 168 KSQKQLIQLATIYIDTLKFPTKKLRRYYESFRKLVTLMEHEAAGAERSSENLRTLEVIKA 227

Query: 216 EVPAYYKDDETSSVIK--DLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENL 273
           E      D E  + IK   LLD     +R+ A+++Y   GE +Y+ +S++D++I+CFE  
Sbjct: 228 E------DSEVDASIKISALLDEHSGHLRADAVKQYLLSGESLYQRSSKIDKEISCFEAS 281

Query: 274 IRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFM 333
           I+RP+FHVKPLDD QL+NWH YL F EK+GDFDW VKLYERCLIPCA+Y EFW+RY +F+
Sbjct: 282 IKRPFFHVKPLDDDQLENWHRYLDFVEKKGDFDWAVKLYERCLIPCANYSEFWIRYAEFV 341

Query: 334 ESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFI 393
           ++KGGREIASYAL RA+  F+K +P  H++ A +KEQIGD   AR+ F E   +  S F 
Sbjct: 342 DAKGGREIASYALGRASSYFVKGVPTFHMYYAMFKEQIGDAQGARSLFIEGSNNLTSNFC 401

Query: 394 EKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYT-------- 445
             +   ANME+R+GN  AA + Y+ A++ A  Q+    LP LY  F++  Y         
Sbjct: 402 ANINRLANMEKRMGNTKAASEIYETAIQDAL-QKNVKILPDLYTNFAQFKYAVNHNISEA 460

Query: 446 --------------ELIK----FTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVE 487
                          LIK    F   HGG + I I+D+VISNA+    D+  + S ED E
Sbjct: 461 KEVFVDGIKQAPCKALIKGFMQFMSTHGGPTEIPILDSVISNAVVPGSDISTILSPEDRE 520

Query: 488 DISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVR 522
           DIS L+L+F+DL G + D+R AW +H KLFPH  R
Sbjct: 521 DISLLFLEFVDLYGDVRDLRKAWARHSKLFPHNTR 555

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557433|ref|XP_002519747.1| Pre-mRNA-processing protein prp39, putative [Ricinus communis] gi|223541164|gb|EEF42720.1| Pre-mRNA-processing protein prp39, putative [Ricinus communis]

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 233/366 (63%), Positives = 279/366 (76%), Gaps = 9/366 (2%)

Query: 1   MEVQISNLESLSAEPNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGL 60
           M  QISN        ++ V   K  L E IA GSL+FDEWTSL+SE+E S PD IE I L
Sbjct: 1   MREQISN-----TGDSTVVVINKAKLNEIIANGSLEFDEWTSLISEVEKSYPDSIEDIRL 55

Query: 61  VYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMST 120
           VYDSFL+EFPLCYGYWRKY +H  RL +IDKVV+VFERAV SATYSVD+W  YC     +
Sbjct: 56  VYDSFLSEFPLCYGYWRKYVNHNIRLSTIDKVVQVFERAVLSATYSVDLWVDYCDFGTLS 115

Query: 121 FEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLH 180
           FEDP+DVRRLFKRALSFVGKDYLCH +WDKYIEFE S + WSSLA I++QTLRFP+KKLH
Sbjct: 116 FEDPSDVRRLFKRALSFVGKDYLCHALWDKYIEFEFSLKHWSSLAHIYIQTLRFPTKKLH 175

Query: 181 HYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDL 240
           HYYDSFKKL   W+ E+E  S+ ++    EL+ + E   +Y  D+   +IK LLDPS+  
Sbjct: 176 HYYDSFKKLVEVWETEMESCSNCSLTELVELMPDTEASIHYNHDDIICIIKKLLDPSIGS 235

Query: 241 VRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAE 300
            RSK +Q Y+ IGE  ++EAS+L+EKI+ FE  I+RPYFHVKPL+  QL+NW+ YL+FAE
Sbjct: 236 ARSKVLQNYKAIGELFFQEASKLNEKISYFETRIKRPYFHVKPLNASQLENWNCYLNFAE 295

Query: 301 KQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVI 360
             GDFDW VKLYERCLIPCA+YPEFWMRYV+FMESKGGREIA+ ALDRATQIFLK    +
Sbjct: 296 LHGDFDWAVKLYERCLIPCANYPEFWMRYVEFMESKGGREIANLALDRATQIFLK----V 351

Query: 361 HLFNAR 366
           ++F  R
Sbjct: 352 YIFLTR 357

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1043
TAIR|locus:2170453	1036	PRP39-2 [Arabidopsis thaliana	0.758	0.763	0.387	1.4e-135
ASPGD|ASPL0000046692	588	AN1635 [Emericella nidulans (t	0.384	0.681	0.315	8.1e-51
POMBASE|SPBC4B4.09	612	usp105 "U1 snRNP-associated pr	0.348	0.593	0.331	2.2e-50
UNIPROTKB|E1C8G8	628	PRPF39 "Uncharacterized protei	0.398	0.662	0.299	1.2e-48
RGD|1308702	664	Prpf39 "PRP39 pre-mRNA process	0.395	0.620	0.296	2.8e-48
UNIPROTKB|F1SI15	667	PRPF39 "Uncharacterized protei	0.395	0.619	0.296	9.1e-48
UNIPROTKB|F1PV57	667	PRPF39 "Uncharacterized protei	0.399	0.625	0.300	1.2e-47
UNIPROTKB|Q86UA1	669	PRPF39 "Pre-mRNA-processing fa	0.388	0.605	0.303	1.9e-47
UNIPROTKB|G4MRU5	586	MGG_04558 "Pre-mRNA-processing	0.373	0.665	0.313	4.1e-47
FB|FBgn0039600	1066	CG1646 [Drosophila melanogaste	0.151	0.148	0.354	9.1e-46

TAIR|locus:2170453 PRP39-2 [Arabidopsis thaliana (taxid:3702)]

 Score = 1312 (466.9 bits), Expect = 1.4e-135, Sum P(2) = 1.4e-135
 Identities = 325/839 (38%), Positives = 453/839 (53%)

Query:     5 ISNLESLSAEP--NSPVGF-GKQGLEEFIAEGSLDFDEWTSLLSEIEN-SCPDDIEMIGL 60
             +S+ E L   P  +S   F     L+E  + G+LDFDEWT L+SEIE  S PDDIE + L
Sbjct:    10 VSDKEPLQRSPELDSSTDFLDNDRLKETFSSGALDFDEWTLLISEIETTSFPDDIEKLCL 69

Query:    61 VYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMST 120
             VYD+FL EFPLC+GYWRKYA HK +LC+++  VEVFERAVQ+ATYSV VW  YC+ +++ 
Sbjct:    70 VYDAFLLEFPLCHGYWRKYAYHKIKLCTLEDAVEVFERAVQAATYSVAVWLDYCAFAVAA 129

Query:   121 FEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLH 180
             +EDP+DV RLF+R LSF+GKDY C T+WDKYIE+ + QQ+WSSLA ++++TL++PSKKL 
Sbjct:   130 YEDPHDVSRLFERGLSFIGKDYSCCTLWDKYIEYLLGQQQWSSLANVYLRTLKYPSKKLD 189

Query:   181 HYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDL 240
              YY +F+K+A + KE+++C  D   +  S+ + E  V   + D+E S V+++L+ PS   
Sbjct:   190 LYYKNFRKIAASLKEKIKCRIDVNGDLSSDPMEEDLVHTRHTDEEISIVVRELMGPSSSS 249

Query:   241 VRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAE 300
               SKA+  Y  IGEQ Y+++ QL EKI+CFE  IRRPYFHVKPLD  QL NWH YLSF E
Sbjct:   250 AVSKALHTYLSIGEQFYQDSRQLMEKISCFETQIRRPYFHVKPLDTNQLDNWHAYLSFGE 309

Query:   301 KQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVI 360
               GDFDW + LYERCLIPCA+Y EFW RYVDF+ESKGGRE+A++AL RA+Q F+K   VI
Sbjct:   310 TYGDFDWAINLYERCLIPCANYTEFWFRYVDFVESKGGRELANFALARASQTFVKSASVI 369

Query:   361 HLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEAL 420
             HLFNAR+KE +GD SAA  A      +    F+E VT KANME+RLGNF AA  TY+EAL
Sbjct:   370 HLFNARFKEHVGDASAASVALSRCGEELGFGFVENVTKKANMEKRLGNFEAAVTTYREAL 429

Query:   421 -ETAAEQRKFHTLPLLYVQFSRLTYT-----ELIKFTMVHGGRS--HISIVDAVISNALY 472
              +T   +    T   LYVQFSRL Y      +     ++ G  +  H  ++   +   L 
Sbjct:   430 NKTLIGKENLETTARLYVQFSRLKYVITNSADDAAQILLEGNENVPHCKLLLEELMRLLM 489

Query:   473 SRPDVLKVFSLEDVEDISSLYLQFLDLCGTI----HDIRNAWNQHIKLFPHTVRTAYECP 528
                   +V  L+ + D   L  Q     G       +I N + + I L   T+    +  
Sbjct:   490 MHGGSRQVDLLDPIID-KELSHQADSSDGLSAEDKEEISNLYMEFIDL-SGTIHDVRKAL 547

Query:   529 GRETK----SLRAFIRGKRESNVASLPQPFESEHLMPSASQDKKFSPPEKSDSESGDDAT 584
             GR  K    S RA +RG R S           E      +QD   +   K  S   D   
Sbjct:   548 GRHIKLFPHSARAKLRGSRPSGNLFRELIQRREKTRERLNQDLLTN---KGISSIVD--- 601

Query:   585 SLPSNQKSPLPENHDIRS-DGAEVDILLSGEADSSSQDRMQQVPPEAAEQHSQDACDPEV 643
             S P  +K    +++  +S D    D + + E +         V         +  C+ + 
Sbjct:   602 SPPKEKKESSLDSYGTQSKDAVRADYV-NTEPNQGCLTSGHLVEGNDNVIERETLCESQS 660

Query:   644 -LSLDL-AHQVTNENETVQASEAFSEEDDVQREYEHESKKDLKPLSLEGLSLDPGGNDSP 701
              LS+ L A++    +  V      S E     +  H S   +  +  + + + P G+ SP
Sbjct:   661 DLSMGLKANEGGKRSHEVSLPIQASPEHGFVTKQAHFSSNSVDTVKSDAIVIQPSGSQSP 720

Query:   702 GSLCATSHECEAPQKTNFSHE----SMLKSEAPRETSLSDG---SVLGASQNNNGSHFAP 754
              S    S E       N  H      M +   PR          S +G  +   G H A 
Sbjct:   721 QSY--QSQESLRQTGRNRYHRRDLNQMHRDSKPRSQERPPQMPYSPVGTGREILGQHMAF 778

Query:   755 SSMGTQAS--SSAPIQTRTVSPSSSASHQNFIPEAHSHPQTPANSGRNW----HEQQNP 807
             +    + +  SS     +    +S+      +  ++++PQ+  + G++      E QNP
Sbjct:   779 THQDNRVALQSSTSQNPQNQFQNSALQMHPVVQTSNAYPQSQIH-GQHMIVSPPESQNP 836

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006396 "RNA processing" evidence=IEA

ASPGD|ASPL0000046692 AN1635 [Emericella nidulans (taxid:162425)]

 Score = 535 (193.4 bits), Expect = 8.1e-51, P = 8.1e-51
 Identities = 136/431 (31%), Positives = 217/431 (50%)

Query:    26 LEEFIAEGSLDFDEWTSLLSEIE--------NSCPDDIEMIGLVYDSFLAEFPLCYGYWR 77
             LE  + +   +F+ W  L+   E        NS P  I  +  VYD FLA+FPL +GYW+
Sbjct:    19 LEAELLDDPDNFETWERLVRAAEALEGGVNRNSNPQAITTVRNVYDRFLAKFPLLFGYWK 78

Query:    78 KYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSF 137
             KYAD +  +   +    V+ER V S + SVD+W +YC+    T  D + +R LF+R  + 
Sbjct:    79 KYADLEFSITGTEAADMVYERGVASISSSVDLWTNYCTFKAETSHDTDIIRELFERGANC 138

Query:   138 VGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEEL 197
             VG D+L H  WDKYIE+E   + +  +  I  + +  P  +   Y++ +++LA   +   
Sbjct:   139 VGLDFLSHPFWDKYIEYEERVEGYDKIFAILARVIEIPMHQYARYFERYRQLAQT-RPVA 197

Query:   198 ECESDSAM-EFQSEL-VLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQ 255
             E    + + +F+++L    G V    K D  + + +DL        R + +  Y     +
Sbjct:   198 ELAPPNVISQFRADLDAAAGIVAPGAKAD--AEIERDL--------RLR-LDGYHL---E 243

Query:   256 IYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERC 315
             I+ +      K   +E+ I+RPYFHV  LD+ QL NW  YL F E +G +  +  LYERC
Sbjct:   244 IFSKTQTETTKRWTYESEIKRPYFHVTELDEGQLANWRKYLDFEEAEGSYARIQFLYERC 303

Query:   316 LIPCADYPEFWMRYVDFMESKGGREI-ASYALDRATQIFLKRL-PVIHLFNARYKEQIGD 373
             L+ CA Y EFW RY  +M ++ G+E        RA+ +++    P   L  A ++E  G 
Sbjct:   304 LVTCAHYDEFWQRYARWMSAQPGKEEDVRNIYQRASYLYVPIANPATRLQYAYFEEMCGR 363

Query:   374 TSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLP 433
              S A+    E+ + +    +E +   ANM RR G   AA + YK  L++   Q +  T  
Sbjct:   364 VSVAKEIH-EAILINIPNHVETIVSLANMCRRHGGLEAAIEVYKSQLDSP--QCEMSTKA 420

Query:   434 LLYVQFSRLTY 444
              L  +++RL +
Sbjct:   421 ALVAEWARLLW 431

GO:0006396 "RNA processing" evidence=IEA

GO:0005685 "U1 snRNP" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

POMBASE|SPBC4B4.09 usp105 "U1 snRNP-associated protein Usp105" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 531 (192.0 bits), Expect = 2.2e-50, P = 2.2e-50
 Identities = 126/380 (33%), Positives = 199/380 (52%)

Query:    36 DFDEWTSLL--SE-IE-----NSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLC 87
             DFD W  L+  SE +E     NS    I  +  VYD FL ++PL +GYW+KYAD +  + 
Sbjct:    27 DFDAWEGLVRASEHLEGGVGRNSSKQAINTLRSVYDRFLGKYPLLFGYWKKYADFEFFVA 86

Query:    88 SIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTM 147
               +    ++ER +    +SVD+W +YC+  M T  D N+VR LF +  + VG D+L H  
Sbjct:    87 GAEASEHIYERGIAGIPHSVDLWTNYCAFKMETNGDANEVRELFMQGANMVGLDFLSHPF 146

Query:   148 WDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEF 207
             WDKY+EFE  Q+R  ++ Q+  + +  P  +   Y++ F +++ +   +     D     
Sbjct:   147 WDKYLEFEERQERPDNVFQLLERLIHIPLHQYARYFERFVQVSQSQPIQQLLPPDVLASI 206

Query:   208 QSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKI 267
             ++++  E   PA      +  +  +  +  +++ R    + Y  I  QI+++      K 
Sbjct:   207 RADVTRE---PAKVVSAGSKQITVERGE--LEIEREMRARIYN-IHLQIFQKVQLETAKR 260

Query:   268 NCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWM 327
               FE+ I+RPYFHVK LD+ QL NW  YL F E +GDF  +  LYERCLI CA Y EFW 
Sbjct:   261 WTFESEIKRPYFHVKELDEAQLVNWRKYLDFEEVEGDFQRICHLYERCLITCALYDEFWF 320

Query:   328 RYVDFMESKGGR-EIASYALDRATQIFLK-RLPVIHLFNARYKEQIGDTSAARAAFPESY 385
             RY  +M ++       S   +RA+ IF     P I +  A ++E  G+ ++A+A + +S 
Sbjct:   321 RYARWMSAQPDHLNDVSIIYERASCIFASISRPGIRVQYALFEESQGNIASAKAIY-QSI 379

Query:   386 IDSDSRFIEKVTFKANMERR 405
             +      +E V     +ERR
Sbjct:   380 LTQLPGNLEAVLGWVGLERR 399

GO:0000243 "commitment complex" evidence=ISO

GO:0000395 "mRNA 5'-splice site recognition" evidence=IC;ISO

GO:0005685 "U1 snRNP" evidence=IDA

GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO

GO:0030627 "pre-mRNA 5'-splice site binding" evidence=ISO

UNIPROTKB|E1C8G8 PRPF39 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 515 (186.3 bits), Expect = 1.2e-48, P = 1.2e-48
 Identities = 134/448 (29%), Positives = 222/448 (49%)

Query:     5 ISNLESLSAEPNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDS 64
             I +L++   E   P+ F K    + + +   DF  W  LL  +E    + +      +D 
Sbjct:    25 IGSLQTTDIEAGFPLDFDK--FWKVVEDNPQDFTGWVYLLQYVEQE--NHLPAARKAFDK 80

Query:    65 FLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDP 124
             F   +P CYGYW+KYAD + R  +I +  EV+ R +Q+   SVD+W HY +    T  DP
Sbjct:    81 FFTHYPYCYGYWKKYADLERRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKDTL-DP 139

Query:   125 ND------VRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKK 178
             +D      +R  ++ A+   G D+    +W+ YI +E  Q     +  I+ + L  P++ 
Sbjct:   140 DDPEANSTIRGAYEHAVLAAGTDFRSDRLWEMYINWEDEQGNLREVTSIYDRILGIPTQL 199

Query:   179 LHHYYDSFKK-LAGAWKEELECESDSAMEFQSELV-LEGEVPAYYK-DDETSSVIKDLLD 235
               H++  FK  +      +L   S+  ++ + EL  + G         D+  S  +D+ D
Sbjct:   200 YSHHFQRFKDHVQNNLPRDL-LTSEQFIQLRRELASVNGHAGGDASAGDDLPSGTEDITD 258

Query:   236 PSVDLVRSKAIQKYRFIGEQIYKEASQLDE-KIN---CFENLIRRPYFHVKPLDDIQLKN 291
             P+  L+      ++R I  +I++E    +E +++    FE  I+RPYFHVKPL+  QLKN
Sbjct:   259 PA-KLITEIENMRHRII--EIHQEMFNHNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKN 315

Query:   292 WHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQ 351
             W +YL F  + G  + VV L+ERC+I CA Y +FW++Y  +ME+    E   +   RA  
Sbjct:   316 WKEYLEFEIENGTHERVVVLFERCVISCALYEDFWIKYAKYMENHS-IEGVRHVYSRACT 374

Query:   352 IFLKRLPVIHLFNARYKEQIGDTSAARA---AFPESYIDSDSRFIEKVTFKANMERRLGN 408
             I L + P++H+  A ++EQ G+   AR     F E  +      + +V+    +ERR GN
Sbjct:   375 IHLPKKPMVHMLWAAFEEQQGNIDEARRILKTFEECILGLAMVRLRRVS----LERRHGN 430

Query:   409 FVAACDTYKEALETA--AEQRKFHTLPL 434
                A    +EA+  A    +  F+ + L
Sbjct:   431 MEEAERLLEEAVRNAKSVSESSFYAIKL 458

GO:0006396 "RNA processing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

RGD|1308702 Prpf39 "PRP39 pre-mRNA processing factor 39 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 498 (180.4 bits), Expect = 2.8e-48, Sum P(2) = 2.8e-48
 Identities = 133/448 (29%), Positives = 220/448 (49%)

Query:     7 NLESLSAEPNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFL 66
             +L     E N P  F K    + +     DF  W  LL  +E    + +      +D F 
Sbjct:    64 DLPVTETEGNFPPEFEK--FWKTVETNPQDFTGWVYLLQYVEQE--NHLMAARKAFDKFF 119

Query:    67 AEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFE--DP 124
               +P CYGYW+KYAD + R  +I +  EV+ R +Q+   SVD+W HY +    T +  DP
Sbjct:   120 IHYPYCYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDP 179

Query:   125 ---NDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHH 181
                + +R  F+ A+   G D+    +W+ YI +E  Q     +  ++ + L  P++   H
Sbjct:   180 ETNSTIRGTFEHAVLAAGTDFRSDKLWEMYINWENEQGNLREVTAVYDRILGIPTQLYSH 239

Query:   182 YYDSFKK-LAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDD-----ETSSVIKDLLD 235
             ++  FK+ +      +L    +  ++ + EL     V  +  DD     +  S I+D+ D
Sbjct:   240 HFQRFKEHVQNNLPRDL-LTGEQFIQLRRELA---SVNGHNGDDGPPGDDLPSGIEDITD 295

Query:   236 PSVDLVRSKAIQKYRFIGEQIYKEASQLDE-KIN---CFENLIRRPYFHVKPLDDIQLKN 291
             P+  L+      ++R I  +I++E    +E +++    FE  I+RPYFHVKPL+  QLKN
Sbjct:   296 PA-KLITEIENMRHRII--EIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKN 352

Query:   292 WHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQ 351
             W +YL F  + G  + VV L+ERC+I CA Y EFW++Y  +ME+    E   +   RA  
Sbjct:   353 WKEYLEFEIENGTHERVVVLFERCVISCALYEEFWIKYAKYMENHS-IEGVRHVFSRACT 411

Query:   352 IFLKRLPVIHLFNARYKEQIGDTSAARA---AFPESYIDSDSRFIEKVTFKANMERRLGN 408
             + L + P+ H+  A ++EQ G+ + AR     F E  +      + +V+    +ERR GN
Sbjct:   412 VHLPKKPMAHMLWAAFEEQQGNINEARIILRTFEECVLGLAMVRLRRVS----LERRHGN 467

Query:   409 FVAACDTYKEALETAAEQRK--FHTLPL 434
                A    ++A+  A    +  F+ + L
Sbjct:   468 MEEAEHLLQDAIRNAKSNNESSFYAIKL 495

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0006396 "RNA processing" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|F1SI15 PRPF39 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 507 (183.5 bits), Expect = 9.1e-48, P = 9.1e-48
 Identities = 133/448 (29%), Positives = 222/448 (49%)

Query:     7 NLESLSAEPNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFL 66
             +L     E N P  + K    + +     DF  W  LL  +E    + +      +D F 
Sbjct:    65 DLPVTETEANFPPEYEK--FWKTVENNPQDFTGWVYLLQYVEQE--NHLMAARKAFDKFF 120

Query:    67 AEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFE--DP 124
               +P CYGYW+KYAD + R  +I +  EV+ R +Q+   SVD+W HY +    T +  DP
Sbjct:   121 IHYPYCYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDP 180

Query:   125 ---NDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHH 181
                + ++  F+ A+   G D+    +W+ YI +E  Q     +  I+ + L  P++   H
Sbjct:   181 ETTSTIKGTFEHAVLAAGTDFRSDRLWEMYINWENEQGNLREVTAIYDRILGIPTQLYSH 240

Query:   182 YYDSFKK-LAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDD-----ETSSVIKDLLD 235
             ++  FK+ +      +L    +  ++ + EL     V  +  DD     +  S I+D+ D
Sbjct:   241 HFQRFKEHVQNNLPRDL-LTGEQFIQLRRELA---SVNGHSGDDGPPGDDLPSGIEDITD 296

Query:   236 PSVDLVRSKAIQKYRFIGEQIYKEASQLDE-KIN---CFENLIRRPYFHVKPLDDIQLKN 291
             P+  L+      ++R I  +I++E    +E +++    FE  I+RPYFHVKPL+  QLKN
Sbjct:   297 PAKKLITEIENMRHRII--EIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKN 354

Query:   292 WHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQ 351
             W +YL F  + G  + VV L+ERC+I CA Y EFW++Y  +ME+    E   +   RA  
Sbjct:   355 WKEYLEFEIENGTHERVVVLFERCVISCALYEEFWIKYAKYMENHS-IEGVRHVFSRACT 413

Query:   352 IFLKRLPVIHLFNARYKEQIGDTSAAR---AAFPESYIDSDSRFIEKVTFKANMERRLGN 408
             I L + P++H+  A ++EQ G+ + AR     F E  +      + +V+    +ERR GN
Sbjct:   414 IHLPKKPMVHMLWAAFEEQQGNINEARNILRTFEECVLGLAMVRLRRVS----LERRHGN 469

Query:   409 FVAACDTYKEALETAA--EQRKFHTLPL 434
                A    ++A++ A    +  F+ + L
Sbjct:   470 MEEAERLLQDAIKNAKANNESSFYAIKL 497

GO:0005634 "nucleus" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

UNIPROTKB|F1PV57 PRPF39 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 506 (183.2 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 137/456 (30%), Positives = 226/456 (49%)

Query:     2 EVQISNLESL---SAEPNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMI 58
             E +I+N   L     E N P  + K    + +     DF  W  LL  +E    + +   
Sbjct:    57 ENEIANAVDLPVTETEANFPPEYEK--FWKTVENNPQDFTGWVYLLQYVEQE--NHLMAA 112

Query:    59 GLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSM 118
                +D F   +P CYGYW+KYAD + R  +I +  EV+ R +Q+   SVD+W HY +   
Sbjct:   113 RKAFDKFFIHYPYCYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLK 172

Query:   119 STFE--DP---NDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLR 173
              T +  DP   + +R  F+ A+   G D+    +W+ YI +E  Q     +  I+ + L 
Sbjct:   173 ETLDPGDPETNSTIRGTFEHAVLAAGTDFRSDRLWEMYINWENEQGNLREVTAIYDRILG 232

Query:   174 FPSKKLHHYYDSFKK-LAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDD-----ETS 227
              P++   H++  FK+ +      +L    +  ++ + EL     V  +  DD     +  
Sbjct:   233 IPTQLYSHHFQRFKEHVQNNLPRDL-LTGEQFIQLRRELA---SVNGHSGDDGPPGDDLP 288

Query:   228 SVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDE-KIN---CFENLIRRPYFHVKP 283
             S I+D+ DP+  L+      ++R I  +I++E    +E +++    FE  I+RPYFHVKP
Sbjct:   289 SGIEDITDPA-KLITEIENMRHRII--EIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKP 345

Query:   284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIAS 343
             L+  QLKNW +YL F  + G  + VV L+ERC+I CA Y EFW++Y  +ME+    E   
Sbjct:   346 LEKAQLKNWKEYLEFEIENGTHERVVVLFERCVISCALYEEFWIKYAKYMENHS-IEGVR 404

Query:   344 YALDRATQIFLKRLPVIHLFNARYKEQIGDTSAAR---AAFPESYIDSDSRFIEKVTFKA 400
             +   RA  I L + P++H+  A ++EQ G+ + AR     F E  +      + +V+   
Sbjct:   405 HVFSRACTIHLPKKPMVHMLWAAFEEQQGNINEARNILRTFEECVLGLAMVRLRRVS--- 461

Query:   401 NMERRLGNFVAACDTYKEALETAAEQRK--FHTLPL 434
              +ERR GN   A    ++A++ A    +  F+ + L
Sbjct:   462 -LERRHGNMEEAEHLLQDAIKNAKSNNESSFYAIKL 496

GO:0005634 "nucleus" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

UNIPROTKB|Q86UA1 PRPF39 "Pre-mRNA-processing factor 39" [Homo sapiens (taxid:9606)]

 Score = 504 (182.5 bits), Expect = 1.9e-47, P = 1.9e-47
 Identities = 134/441 (30%), Positives = 219/441 (49%)

Query:    14 EPNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCY 73
             E N P  + K    + +     DF  W  LL  +E    + +      +D F   +P CY
Sbjct:    74 EANFPPEYEK--FWKTVENNPQDFTGWVYLLQYVEQE--NHLMAARKAFDRFFIHYPYCY 129

Query:    74 GYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFE--DP---NDVR 128
             GYW+KYAD + R  +I    EV+ R +Q+   SVD+W HY +    T +  DP   N +R
Sbjct:   130 GYWKKYADLEKRHDNIKPSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETNNTIR 189

Query:   129 RLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKK 188
               F+ A+   G D+    +W+ YI +E  Q     +  I+ + L  P++   H++  FK+
Sbjct:   190 GTFEHAVLAAGTDFRSDRLWEMYINWENEQGNLREVTAIYDRILGIPTQLYSHHFQRFKE 249

Query:   189 -LAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDD-----ETSSVIKDLLDPSVDLVR 242
              +      +L    +  ++ + EL     V  +  DD     +  S I+D+ DP+  L+ 
Sbjct:   250 HVQNNLPRDL-LTGEQFIQLRRELA---SVNGHSGDDGPPGDDLPSGIEDITDPA-KLIT 304

Query:   243 SKAIQKYRFIGEQIYKEASQLDE-KIN---CFENLIRRPYFHVKPLDDIQLKNWHDYLSF 298
                  ++R I  +I++E    +E +++    FE  I+RPYFHVKPL+  QLKNW +YL F
Sbjct:   305 EIENMRHRII--EIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEF 362

Query:   299 AEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLP 358
               + G  + VV L+ERC+I CA Y EFW++Y  +ME+    E   +   RA  I L + P
Sbjct:   363 EIENGTHERVVVLFERCVISCALYEEFWIKYAKYMENHS-IEGVRHVFSRACTIHLPKKP 421

Query:   359 VIHLFNARYKEQIGDTSAAR---AAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDT 415
             ++H+  A ++EQ G+ + AR     F E  +      + +V+    +ERR GN   A   
Sbjct:   422 MVHMLWAAFEEQQGNINEARNILKTFEECVLGLAMVRLRRVS----LERRHGNLEEAEHL 477

Query:   416 YKEALETAAEQRK--FHTLPL 434
              ++A++ A    +  F+ + L
Sbjct:   478 LQDAIKNAKSNNESSFYAVKL 498

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|G4MRU5 MGG_04558 "Pre-mRNA-processing factor 39" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 501 (181.4 bits), Expect = 4.1e-47, P = 4.1e-47
 Identities = 132/421 (31%), Positives = 204/421 (48%)

Query:    37 FDEWTSLLSEIE--------NSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCS 88
             F+ W  L+   E        NS P  +  +   YD FL +FPL +GYW+KYAD +  +  
Sbjct:    31 FENWEKLVRACEALDGGLTRNSSPQALATLRDAYDRFLLKFPLLFGYWKKYADLEFTIAG 90

Query:    89 IDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMW 148
              +    V+ER   S T SVD+W  YCS  M T   P  VR LF+R  + VG D++ H  W
Sbjct:    91 PESAEMVYERGCASITNSVDLWTEYCSFKMETTHVPQLVRDLFERGAACVGLDFMAHPFW 150

Query:   149 DKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQ 208
             +KY+E+E  Q+   ++ +I  + +  P  +   YY+ F  +      +    ++    F+
Sbjct:   151 NKYLEYEERQEAHENIFKILQRVIHIPMYQYARYYERFSTMVHTRALDDVVSAELQARFK 210

Query:   209 SELVLEGEVPAYYKDDETSSVIKDLLDPSVDL-VRSKAIQKYRFIGEQIYKEASQLDEKI 267
             +E+  E E  AY        V K   +P  +  +R K    Y   GE   K  +++ ++ 
Sbjct:   211 TEI--EAEAAAY-------GVTKT--EPEFEQEMRRKVDAHY---GEIFTKTQTEVTKRW 256

Query:   268 NCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWM 327
               +E  I+RPYFHV  L+  +L NW  YL F E +G F     LYERCL+ CA Y EFW 
Sbjct:   257 -LYEAEIKRPYFHVTELEKKELSNWRKYLDFEEAEGSFVRTAFLYERCLVTCAFYDEFWF 315

Query:   328 RYVDFMESKGGR--EIASYALDRATQIFLK-RLPVIHLFNARYKEQIGDTSAARAAFPES 384
             RY  +M ++  +  E+ +  L RA  IF+    P I L  A ++E  G  + AR      
Sbjct:   316 RYARWMSAQPDKTEEVRNIYL-RAATIFVPISRPGIRLQFAYFEESCGRVAMAREVHNAI 374

Query:   385 YIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTY 444
              +      IE +   AN+ERR  +   A +  K+ +E+   +    T  +L  +++ L +
Sbjct:   375 LLRLPG-CIEVIISLANLERRHNDIDTAIEVLKQQIESP--EVDIWTKAVLVTEWASLLW 431

Query:   445 T 445
             T
Sbjct:   432 T 432

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0039600 CG1646 [Drosophila melanogaster (taxid:7227)]

 Score = 287 (106.1 bits), Expect = 9.1e-46, Sum P(3) = 9.1e-46
 Identities = 57/161 (35%), Positives = 90/161 (55%)

Query:    30 IAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSI 89
             + E S DF  WT LL  ++N    D E     YD+FL+ +P CYGYWRKYAD++ R    
Sbjct:   372 VKEDSTDFTGWTYLLQYVDNE--SDAEAAREAYDTFLSHYPYCYGYWRKYADYEKRKGIK 429

Query:    90 DKVVEVFERAVQSATYSVDVWFHYCSLSMSTF-EDPNDVRRLFKRALSFVGKDYLCHTMW 148
                 +VFER +++   SVD+W HY     S   +D   VR  ++RA+   G ++    +W
Sbjct:   430 ANCYKVFERGLEAIPLSVDLWIHYLMHVKSNHGDDETFVRSQYERAVKACGLEFRSDKLW 489

Query:   149 DKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKL 189
             D YI +E   +R+  + QI+ + L  P++  + ++D+F+ L
Sbjct:   490 DAYIRWENESKRYHRVVQIYDRLLAIPTQGYNGHFDNFQDL 530

GO:0005685 "U1 snRNP" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS

GO:0005634 "nucleus" evidence=IC

GO:0000381 "regulation of alternative mRNA splicing, via spliceosome" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1043
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	2e-15
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	3e-13
pfam09606	768	pfam09606, Med15, ARC105 or Med15 subunit of Media	3e-13
pfam09606	768	pfam09606, Med15, ARC105 or Med15 subunit of Media	4e-12
pfam09606	768	pfam09606, Med15, ARC105 or Med15 subunit of Media	2e-11
pfam09606	768	pfam09606, Med15, ARC105 or Med15 subunit of Media	2e-11
pfam09606	768	pfam09606, Med15, ARC105 or Med15 subunit of Media	5e-10
pfam09606	768	pfam09606, Med15, ARC105 or Med15 subunit of Media	3e-09
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	1e-08
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	4e-08
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	7e-07
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	9e-07
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	2e-06
pfam11498	476	pfam11498, Activator_LAG-3, Transcriptional activa	2e-06
pfam11498	476	pfam11498, Activator_LAG-3, Transcriptional activa	4e-06
pfam09606	768	pfam09606, Med15, ARC105 or Med15 subunit of Media	6e-06
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	2e-05
PRK10927	319	PRK10927, PRK10927, essential cell division protei	2e-05
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	3e-05
COG3264	835	COG3264, COG3264, Small-conductance mechanosensiti	5e-05
PRK10920	390	PRK10920, PRK10920, putative uroporphyrinogen III	5e-05
PRK12757	256	PRK12757, PRK12757, cell division protein FtsN; Pr	6e-05
pfam11498	476	pfam11498, Activator_LAG-3, Transcriptional activa	8e-05
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	8e-05
smart00386	33	smart00386, HAT, HAT (Half-A-TPR) repeats	1e-04
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	2e-04
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	3e-04
PRK00286	438	PRK00286, xseA, exodeoxyribonuclease VII large sub	4e-04
COG3064	387	COG3064, TolA, Membrane protein involved in colici	4e-04
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	6e-04
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	6e-04
COG2959	391	COG2959, HemX, Uncharacterized enzyme of heme bios	6e-04
PRK10927	319	PRK10927, PRK10927, essential cell division protei	8e-04
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	0.001
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	0.001
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	0.001
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.002
TIGR01628	562	TIGR01628, PABP-1234, polyadenylate binding protei	0.002
PRK01294	336	PRK01294, PRK01294, lipase chaperone; Provisional	0.002
smart00818	165	smart00818, Amelogenin, Amelogenins, cell adhesion	0.003

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 81.0 bits (200), Expect = 2e-15
 Identities = 48/202 (23%), Positives = 61/202 (30%), Gaps = 13/202 (6%)

Query: 826  QHQQRRFSSQRYPRNESGDQMPMNSRFPSQPLPSQNPQAQQGSQAQSQFLHS--LTAQAW 883
               Q  + +   P      Q P  S + + P P   P     SQ Q Q      L+ +  
Sbjct: 101  SPCQSGYEASTDPEYIPDLQ-PDPSLWGTAPKPEPQPPQAPESQPQPQTPAQKMLSLEEV 159

Query: 884  PMQNMQQQTFASASQSEVPAQPVFYPQAQMSQYPSQSSEQQGLLQSNLAYNQMWQYYYYQ 943
              Q  Q+Q        ++P  P       M   P + +                    + 
Sbjct: 160  EAQLQQRQ-----QAPQLPQPPQQVLPQGM---PPRQAAFPQQGPPEQPPGYPQPPQGHP 211

Query: 944  QQQQQQLFLQQQHLQLQQQHLQPLQQQQFVQQQQYQQQHSLYLQQQPQHQQLEQYQMQQQ 1003
            +Q Q Q FL        Q  L P   QQ    QQ  Q   L  Q  P   Q  Q Q QQ 
Sbjct: 212  EQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQ-PQFPGLSQQMPPPPPQPPQ-QQQQP 269

Query: 1004 VQQQDQHPPQQWQLEQRQSEQQ 1025
             Q Q Q PPQ          Q 
Sbjct: 270  PQPQAQPPPQNQPTPHPGLPQG 291

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 74.0 bits (182), Expect = 3e-13
 Identities = 39/209 (18%), Positives = 51/209 (24%), Gaps = 9/209 (4%)

Query: 820  GHSHKRQHQQRRFSSQRYPRNESGDQMPMNSRFPSQPLPSQNPQAQ---QGSQAQSQFLH 876
                 +  + +        +  S +++    +   Q      P  Q   QG   +     
Sbjct: 133  EPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFP 192

Query: 877  SLTAQAWPMQNMQQQTFASASQSEVPAQPVFYPQAQMSQYPSQSSEQQGLLQSNLAYNQM 936
                   P    Q               P           P Q  +Q   LQ        
Sbjct: 193  QQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLS 252

Query: 937  WQYYYYQQQQQQQLFLQQQHLQLQQQHLQPLQQQQFVQQQQYQQQHSLYLQQQPQHQQLE 996
             Q          Q   QQQ     Q    P  Q          Q   L   QQP  Q L 
Sbjct: 253  QQ----MPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQP--QLLP 306

Query: 997  QYQMQQQVQQQDQHPPQQWQLEQRQSEQQ 1025
              Q  Q  Q+  Q   Q  QL Q+Q E  
Sbjct: 307  LVQQPQGQQRGPQFREQLVQLSQQQREAL 335

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal

 Score = 73.5 bits (180), Expect = 3e-13
 Identities = 47/185 (25%), Positives = 54/185 (29%), Gaps = 16/185 (8%)

Query: 843  GDQMPMNSRFPSQPLPSQNPQAQQGSQAQSQFLHSLTAQAWPMQNMQQQTFASASQSEVP 902
            G Q     +  S    SQ P      Q Q+Q       Q       QQQ          P
Sbjct: 144  GGQAGGMMQQSSGQPQSQQPNQMGPQQGQAQGQAGGMNQGQQGPVGQQQ----------P 193

Query: 903  AQPVFYPQAQMSQYPSQSSEQQGLLQSNLAYNQMWQYYYYQQQQQQQLFLQQQHLQLQQQ 962
             Q     Q  M     Q   QQ                  Q QQQQQ  + QQ      Q
Sbjct: 194  PQMG---QPGMPGGGGQGQMQQQGQPGGQQQQNPQMQQQLQNQQQQQ--MDQQQGPADAQ 248

Query: 963  HLQPLQQQQFVQQQQYQQQHSLYLQQQPQHQQLEQYQMQQQVQQQDQHPPQQWQLEQRQS 1022
              Q  QQQQ     Q QQ     +Q   Q Q  +Q   Q Q+        Q     Q   
Sbjct: 249  -AQMGQQQQGQGGMQPQQMQGGQMQVPMQQQPPQQQPQQSQLGMLPNQMQQMPGGGQGGP 307

Query: 1023 EQQIG 1027
             Q +G
Sbjct: 308  GQPMG 312

The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768

>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal

 Score = 70.0 bits (171), Expect = 4e-12
 Identities = 53/273 (19%), Positives = 76/273 (27%), Gaps = 22/273 (8%)

Query: 759  TQASSSAPIQTRTVSPSSSASHQNFIPEAHSHPQTPANSGRNWHEQQNPDRVHRDLRFGY 818
                   P+    + P   +      P   +      +SG+   +Q N        + G 
Sbjct: 117  LNVRGQMPMGAAGMGPHQMSRVGTMQPGGQAGGMMQQSSGQPQSQQPN--------QMGP 168

Query: 819  RGHSHKRQHQQRRFSSQRYPRNESGDQMPMNSRFPSQPLPSQNPQAQQGSQAQSQFLHSL 878
            +    + Q        Q       G Q P     P  P      Q QQ  Q   Q   + 
Sbjct: 169  QQGQAQGQAGGMNQGQQGPV----GQQQPPQMGQPGMPGGGGQGQMQQQGQPGGQQQQNP 224

Query: 879  TAQAWPMQNMQQQTFASASQSEVPAQPVFYPQAQMSQYPSQSSEQQGLLQSNLAYNQMWQ 938
              Q       QQQ      Q + PA        Q         +Q    Q  +   Q   
Sbjct: 225  QMQQQLQNQQQQQM----DQQQGPADAQAQMGQQQQGQGGMQPQQMQGGQMQVPMQQQPP 280

Query: 939  YYYYQQQQQQQLFLQQQHLQ-----LQQQHLQPLQQQQFVQQQQYQQ-QHSLYLQQQPQH 992
                QQ Q   L  Q Q +         Q + P  Q+     Q  Q  Q  +    Q Q 
Sbjct: 281  QQQPQQSQLGMLPNQMQQMPGGGQGGPGQPMGPPPQRPGAVPQGGQAVQQGVMSAGQQQL 340

Query: 993  QQLEQYQMQQQVQQQDQHPPQQWQLEQRQSEQQ 1025
            +Q++   M+ Q Q Q Q   Q         +Q 
Sbjct: 341  KQMKLRNMRGQQQTQQQQQQQGGNHPAAHQQQM 373

The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768

>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal

 Score = 68.1 bits (166), Expect = 2e-11
 Identities = 53/184 (28%), Positives = 62/184 (33%), Gaps = 14/184 (7%)

Query: 845  QMPMNSRFPSQPLPSQNPQAQQGSQAQSQFLHSLTAQAWPMQNMQQQTFASASQSEVPAQ 904
            QMPM +        S+    Q G QA              MQ    Q  +       P Q
Sbjct: 122  QMPMGAAGMGPHQMSRVGTMQPGGQAGG-----------MMQQSSGQPQSQQPNQMGPQQ 170

Query: 905  PVFYPQAQMSQYPSQSSEQQGLLQSNLAYNQMWQYYYYQQQQQQQLFLQQQHLQLQQQHL 964
                 QA       Q    Q                  Q QQQ Q   QQQ     QQ L
Sbjct: 171  GQAQGQAGGMNQGQQGPVGQQQPPQMGQPGMPGGGGQGQMQQQGQPGGQQQQNPQMQQQL 230

Query: 965  QPLQQQQFVQQQQYQQQHSLYLQQQPQHQQLEQYQMQQQVQQQDQHPPQQWQLEQRQSEQ 1024
            Q  QQQQ + QQQ        + QQ Q Q     Q QQ    Q Q P QQ   +Q+  + 
Sbjct: 231  Q-NQQQQQMDQQQGPADAQAQMGQQQQGQG--GMQPQQMQGGQMQVPMQQQPPQQQPQQS 287

Query: 1025 QIGM 1028
            Q+GM
Sbjct: 288  QLGM 291

The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768

>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal

 Score = 67.7 bits (165), Expect = 2e-11
 Identities = 57/267 (21%), Positives = 81/267 (30%), Gaps = 21/267 (7%)

Query: 755  SSMGTQASSSAPIQTRTVSPSSSASHQNFIPEAHSHPQTPANSG--RNWHEQQNPDRVHR 812
             +M     +   +Q  +  P S   +Q    +  +  Q    +   +    QQ P ++ +
Sbjct: 139  GTMQPGGQAGGMMQQSSGQPQSQQPNQMGPQQGQAQGQAGGMNQGQQGPVGQQQPPQMGQ 198

Query: 813  DLRFGYRGHSHKRQHQQRRFSSQRYPRNESGDQMPMNSRFPSQPLPS----QNPQAQQG- 867
                G  G    +Q  Q     Q+ P+ +   Q     +   Q  P+    Q  Q QQG 
Sbjct: 199  PGMPGGGGQGQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQQGQ 258

Query: 868  SQAQSQFLHSLTAQAWPMQNMQQQTFASASQSEVPAQPVFYPQAQMSQYPSQSSEQQGLL 927
               Q Q +     Q  PMQ    Q     SQ  +          QM Q P       G  
Sbjct: 259  GGMQPQQMQGGQMQV-PMQQQPPQQQPQQSQLGMLPN-------QMQQMPGGGQGGPGQP 310

Query: 928  QSNLAYNQMWQYYYYQQQQQQQLFLQQQHLQLQQQHLQPLQQQQFVQQQQYQQQHSLYLQ 987
                           Q  QQ  +   QQ L+  +       QQQ  QQQQ Q        
Sbjct: 311  MGPPPQRPGAVPQGGQAVQQGVMSAGQQQLKQMKL-RNMRGQQQTQQQQQQQGG-----N 364

Query: 988  QQPQHQQLEQYQMQQQVQQQDQHPPQQ 1014
                HQQ    Q+ Q  Q         
Sbjct: 365  HPAAHQQQMNQQVGQGGQMVALGYLNI 391

The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768

>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal

 Score = 63.1 bits (153), Expect = 5e-10
 Identities = 61/280 (21%), Positives = 77/280 (27%), Gaps = 19/280 (6%)

Query: 749  GSHFAPSSMGTQASSSAPIQTRTVSPSSSASHQNFIPEAHSHPQTPANSGRNWHEQQNPD 808
                 P+ MG Q   +   Q   ++           P     P  P   G+   +QQ   
Sbjct: 158  PQSQQPNQMGPQQGQAQG-QAGGMNQGQQGPVGQQQPPQMGQPGMPGGGGQGQMQQQGQP 216

Query: 809  RVHRDLRFGYRGHSHKRQHQQRRFSS-QRYPRNESGDQMPMNSRFPSQP---LPSQNPQA 864
               +      +     +Q QQ          + + G Q         Q       Q P  
Sbjct: 217  GGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQQGQGGMQPQQMQGGQMQVPMQ 276

Query: 865  QQGSQAQSQFLHSLTAQAWPMQNMQQQTFASASQSEVP---AQPVFYPQAQMSQYPSQSS 921
            QQ  Q Q Q    L      MQ M         Q   P            Q  Q    S+
Sbjct: 277  QQPPQQQPQ-QSQLGMLPNQMQQMPGGGQGGPGQPMGPPPQRPGAVPQGGQAVQQGVMSA 335

Query: 922  EQQGLLQSNLAYNQMWQYYYYQQQQQQQLFLQQQHLQLQQQHLQPLQQQQFVQQQQYQQQ 981
             QQ L Q  L   +  Q     QQQQQQ          QQ + Q  Q  Q V       Q
Sbjct: 336  GQQQLKQMKLRNMRGQQQ---TQQQQQQQGGNHPAAHQQQMNQQVGQGGQMVALGYLNIQ 392

Query: 982  HSLYLQQQPQHQQLEQYQM-------QQQVQQQDQHPPQQ 1014
             +         QQ +   M       Q Q  Q    PPQ 
Sbjct: 393  GNQGGLGANPMQQGQPGMMSSPSPVPQVQTNQSMPQPPQP 432

The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768

>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal

 Score = 60.8 bits (147), Expect = 3e-09
 Identities = 54/192 (28%), Positives = 62/192 (32%), Gaps = 31/192 (16%)

Query: 856  PLPSQNPQAQQ--GSQAQSQFLHSLT---------AQAWPMQNMQQQTFASASQSEVPAQ 904
                  P  QQ  G    S  L SL          A   P Q  +  T     Q+    Q
Sbjct: 93   GPGPGRPMGQQMGGPGTASNLLQSLNVRGQMPMGAAGMGPHQMSRVGTMQPGGQAGGMMQ 152

Query: 905  PVFYPQAQMSQYPSQSSEQQGLLQSNLAYNQMWQYYYYQQQQQQQLFLQQQHLQLQQQHL 964
                     SQ P+Q   QQG  Q+      M       Q QQ  +  QQ     Q    
Sbjct: 153  QS--SGQPQSQQPNQMGPQQG--QAQGQAGGM------NQGQQGPVGQQQPPQMGQPGMP 202

Query: 965  QPLQQQQFVQQQQYQQQHSLYLQQQPQHQQLEQYQMQQQVQQQD------QHPPQQWQLE 1018
                Q Q  QQ Q   Q     QQ PQ QQ  Q Q QQQ+ QQ           QQ Q +
Sbjct: 203  GGGGQGQMQQQGQPGGQQ----QQNPQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQQGQ 258

Query: 1019 QRQSEQQIGMSQ 1030
                 QQ+   Q
Sbjct: 259  GGMQPQQMQGGQ 270

The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 59.1 bits (144), Expect = 1e-08
 Identities = 29/96 (30%), Positives = 34/96 (35%), Gaps = 15/96 (15%)

Query: 943  QQQQQQQLFLQQQHLQLQ-----QQHL--------QPLQQQQFVQQQQYQQQHSLYLQQQ 989
            Q  Q  Q  +QQ    L      QQ L        Q     Q  +QQ  Q Q      Q 
Sbjct: 577  QGGQGGQSEMQQAMEGLGETLREQQGLSDETFRDLQEQFNAQRGEQQGQQGQGGQ--GQG 634

Query: 990  PQHQQLEQYQMQQQVQQQDQHPPQQWQLEQRQSEQQ 1025
               QQ +Q Q QQQ QQ       Q  L +RQ   +
Sbjct: 635  QPGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALR 670

Length = 820

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 57.5 bits (139), Expect = 4e-08
 Identities = 44/194 (22%), Positives = 58/194 (29%), Gaps = 26/194 (13%)

Query: 819  RGHSHKRQHQQRRFSSQRYPRNESGDQMPMNSRFPSQPLPSQNPQAQQGSQAQSQFLHSL 878
            +        +Q  F  Q  P    G         P Q  P Q   A   + AQ      L
Sbjct: 178  QVLPQGMPPRQAAFPQQGPPEQPPG-YPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQL 236

Query: 879  TAQAWPMQNMQQQTFASASQSEVPAQPVFYPQAQMSQYPSQSSEQQGLLQSNLAYNQMWQ 938
              Q      +QQ  F   SQ   P  P   P  Q  Q P      Q   Q          
Sbjct: 237  PQQ---PPPLQQPQFPGLSQQMPPPPP--QPPQQQQQPPQPQ--AQPPPQ---------- 279

Query: 939  YYYYQQQQQQQLFLQQQHLQLQ---QQHLQPLQQQQFVQQQQYQQQHSL-YLQQQPQHQQ 994
                 Q        Q Q+  L    Q  L PL QQ   QQ+  Q +  L  L QQ +   
Sbjct: 280  ----NQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLVQLSQQQREAL 335

Query: 995  LEQYQMQQQVQQQD 1008
             ++   + + + + 
Sbjct: 336  SQEEAKRAKRRHKI 349

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 53.0 bits (128), Expect = 7e-07
 Identities = 49/196 (25%), Positives = 69/196 (35%), Gaps = 33/196 (16%)

Query: 830  RRFSSQRYPRNESGDQMPMNSRFPSQPLPSQNPQ---------AQQGSQAQSQFLHSLTA 880
            R+ + Q     + GDQ P      S  L  Q+ Q          + G +A++Q L     
Sbjct: 510  RQLAEQAQRNPQQGDQPPDQG--NSMELTQQDLQRMMDRIEELMESGRRAEAQQLLEQLQ 567

Query: 881  QAWPMQNMQQQTFASASQSEVPAQPVFYPQAQMSQYPSQSSEQQGLLQSNLAYNQMWQYY 940
            Q   M+N+Q        QSE+        Q  M        EQQGL  S+  +  +    
Sbjct: 568  QM--MENLQVTQGGQGGQSEM--------QQAMEGLGETLREQQGL--SDETFRDL---- 611

Query: 941  YYQQQQQQQLFLQQQHLQLQQQHLQPLQQQQFVQQQQYQQQHSLYLQQQPQHQQL--EQY 998
              Q+Q   Q   QQ   Q  Q      Q  Q  QQ Q QQQ       Q     L   Q 
Sbjct: 612  --QEQFNAQRGEQQG--QQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQ 667

Query: 999  QMQQQVQQQDQHPPQQ 1014
             ++ ++ +Q    P  
Sbjct: 668  ALRDELGRQRGGLPGM 683

Length = 820

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 52.1 bits (125), Expect = 9e-07
 Identities = 34/190 (17%), Positives = 56/190 (29%), Gaps = 2/190 (1%)

Query: 852  FPSQPLPSQNPQAQQGSQAQSQFLHSLTAQAWPMQN-MQQQTFASASQSEVPAQPVFYPQ 910
            FP  P P   P   Q  Q   Q   +   QA P  +  Q  T   +  +  PA       
Sbjct: 47   FPWDPSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAG 106

Query: 911  AQMSQYPSQSSEQQGLLQSNLAYNQMWQYYYYQQQQQQQLFLQQQHLQLQQQHLQPLQQQ 970
                   ++   Q   +Q  +   Q        Q  QQ+   Q Q         Q   QQ
Sbjct: 107  PAGPTIQTEPG-QLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAPASGQLPSQQ 165

Query: 971  QFVQQQQYQQQHSLYLQQQPQHQQLEQYQMQQQVQQQDQHPPQQWQLEQRQSEQQIGMSQ 1030
            Q  Q+    Q       + P  Q       + +   + +      +   + +E    M  
Sbjct: 166  QSAQKNDESQLQQQPNGETPPQQTDGAGDDESEALVRLREADGTLEQRIKGAEGGGAMKV 225

Query: 1031 IEKWNNSSKQ 1040
            +++    +K 
Sbjct: 226  LKQPKKQAKS 235

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 51.6 bits (123), Expect = 2e-06
 Identities = 36/115 (31%), Positives = 41/115 (35%), Gaps = 9/115 (7%)

Query: 900  EVPAQPVFYPQAQMSQYPSQSSEQQGLLQSNLAYNQMWQYYYYQQQQQQQLFLQQQHLQL 959
            + P +P+F P       P Q  +Q    Q      Q       Q QQ QQ    Q   Q 
Sbjct: 738  DGPHEPLFTP----IVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQ 793

Query: 960  QQQHLQPLQQQQFVQQQQYQQQHSLYLQQQPQHQQLEQYQMQQQVQQQDQHPPQQ 1014
             QQ + P  Q Q  QQ    Q       QQPQ     Q Q QQ  QQ     PQ 
Sbjct: 794  PQQPVAPQPQYQQPQQPVAPQPQ----YQQPQQPVAPQPQYQQP-QQPVAPQPQD 843

Length = 1355

>gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3

 Score = 51.1 bits (121), Expect = 2e-06
 Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 11/125 (8%)

Query: 909  PQAQMSQYPSQSSEQQGLLQSNLAYNQMWQYYYYQQQQQQQLFLQQQHLQLQQQHLQPLQ 968
            P A   Q+ +Q ++QQ  ++  L   Q  +    +QQ+QQQ+  Q Q  Q Q+   Q + 
Sbjct: 314  PPAMNPQHIAQLAQQQNKMR--LLQQQEMEMQRIEQQRQQQIMHQHQQQQQQEHQQQQML 371

Query: 969  QQQFVQQQQYQQQHSL-----YLQQQPQH----QQLEQYQMQQQVQQQDQHPPQQWQLEQ 1019
             QQ  Q  Q QQ H +     +  Q  QH    QQ++  ++Q+Q+Q Q Q      Q +Q
Sbjct: 372  LQQQQQMHQLQQHHQMNGGGQFATQAHQHAAYLQQMQHMRLQEQIQHQQQQAQHHQQAQQ 431

Query: 1020 RQSEQ 1024
            +  + 
Sbjct: 432  QHQQP 436

The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1. Length = 476

>gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3

 Score = 50.3 bits (119), Expect = 4e-06
 Identities = 38/123 (30%), Positives = 49/123 (39%), Gaps = 10/123 (8%)

Query: 903  AQPVFYPQAQMSQYPSQSSEQQGLLQSNLAYNQMWQYYYYQQQQQQQLFLQQQHLQLQQQ 962
              P   PQ  ++Q   Q ++ + L Q  +   ++ Q    Q   Q Q   QQ+H Q Q  
Sbjct: 313  PPPAMNPQ-HIAQLAQQQNKMRLLQQQEMEMQRIEQQRQQQIMHQHQQQQQQEHQQQQML 371

Query: 963  HLQPLQQQQFVQQQQYQ---------QQHSLYLQQQPQHQQLEQYQMQQQVQQQDQHPPQ 1013
              Q  Q  Q  Q  Q            QH+ YLQQ    +  EQ Q QQQ  Q  Q   Q
Sbjct: 372  LQQQQQMHQLQQHHQMNGGGQFATQAHQHAAYLQQMQHMRLQEQIQHQQQQAQHHQQAQQ 431

Query: 1014 QWQ 1016
            Q Q
Sbjct: 432  QHQ 434

The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1. Length = 476

>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal

 Score = 50.0 bits (119), Expect = 6e-06
 Identities = 46/196 (23%), Positives = 60/196 (30%), Gaps = 34/196 (17%)

Query: 859  SQNPQAQQGSQAQSQFLHSLTAQAWPMQNMQQQTFASASQSEVPAQPVFYPQAQMS---- 914
            +   Q  QG Q     +++L       QN+  Q         +   P      QM     
Sbjct: 57   AAQQQVLQGGQGMPDPINAL-------QNLTGQGTRGPQMGPMGPGPGRPMGQQMGGPGT 109

Query: 915  ----QYPSQSSEQQGLLQSNLAYNQMWQYYYYQQQQQQQLFLQQQHLQLQQQHLQPLQQQ 970
                        Q  +  + +  +QM +    Q   Q    +QQ   Q Q Q  QP  Q 
Sbjct: 110  ASNLLQSLNVRGQMPMGAAGMGPHQMSRVGTMQPGGQAGGMMQQSSGQPQSQ--QP-NQM 166

Query: 971  QFVQQQ-------QYQQQHSLYLQQQP---------QHQQLEQYQMQQQVQQQDQHPPQQ 1014
               Q Q         Q Q     QQQP               Q Q Q Q   Q Q  PQ 
Sbjct: 167  GPQQGQAQGQAGGMNQGQQGPVGQQQPPQMGQPGMPGGGGQGQMQQQGQPGGQQQQNPQM 226

Query: 1015 WQLEQRQSEQQIGMSQ 1030
             Q  Q Q +QQ+   Q
Sbjct: 227  QQQLQNQQQQQMDQQQ 242

The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 47.9 bits (114), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 938  QYYYYQQQQQQQLFLQQQHLQLQQQHLQPLQQQQFVQQQQYQQQHSLYLQQQPQHQQLEQ 997
            QY   QQQQ+     ++Q  + +QQ  + LQQ+Q  +Q++ +Q     L  Q Q +Q E+
Sbjct: 63   QYNRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEE 122

Query: 998  YQMQQQVQQQDQ 1009
               +Q   +Q Q
Sbjct: 123  -AAKQAALKQKQ 133

Length = 387

>gnl|CDD|236797 PRK10927, PRK10927, essential cell division protein FtsN; Provisional

 Score = 47.4 bits (112), Expect = 2e-05
 Identities = 30/99 (30%), Positives = 41/99 (41%), Gaps = 15/99 (15%)

Query: 910  QAQMSQYPSQSSEQQGLLQSNLAYNQMWQYYYYQQQQQQQLFLQQQHLQLQQQHLQPLQQ 969
            QA M Q P+Q  E        + +N+        +Q+QQ L  Q+Q  QL +Q  Q L Q
Sbjct: 126  QADMRQQPTQLVE--------VPWNEQ-----TPEQRQQTLQRQRQAQQLAEQ--QRLAQ 170

Query: 970  QQFVQQQQYQQQHSLYLQQQPQHQQLEQYQMQQQVQQQD 1008
            Q    +Q +QQQ         Q Q  +      Q   QD
Sbjct: 171  QSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASTQQPYQD 209

Length = 319

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 47.8 bits (114), Expect = 3e-05
 Identities = 31/215 (14%), Positives = 51/215 (23%), Gaps = 30/215 (13%)

Query: 757 MGTQASSSAPIQTRTVSPSSSASHQNFIPEAHSHPQTPANSGRNWHEQQNPDRVHRDLRF 816
           +  +  +    Q            +         P+ P    +    Q +P++V      
Sbjct: 163 LQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQ--PPQGHPEQVQ----- 215

Query: 817 GYRGHSHKRQHQQRRFSSQRYPRNESGDQMPMNSRFPSQPLPSQNPQAQQGSQAQSQFLH 876
                        +  +    P        P+        L  Q P        Q Q   
Sbjct: 216 ----PQQFLPAPSQAPAQPPLPPQLPQQPPPLQQP-QFPGLSQQMPPPPPQPPQQQQQPP 270

Query: 877 SLTAQAWPMQNMQQQTFASASQSEVPAQPVFYPQAQMSQYPSQSSEQQGLLQSNLAYNQM 936
              AQ  P                        P     Q       QQ  L   +   Q 
Sbjct: 271 QPQAQPPPQNQPTPH-----------------PGLPQGQNAPLPPPQQPQLLPLVQQPQG 313

Query: 937 WQYYYYQQQQQQQLFLQQQHLQLQQQHLQPLQQQQ 971
            Q     ++Q  QL  QQQ   L Q+  +  +++ 
Sbjct: 314 QQRGPQFREQLVQLS-QQQREALSQEEAKRAKRRH 347

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

 Score = 47.0 bits (112), Expect = 5e-05
 Identities = 39/199 (19%), Positives = 65/199 (32%), Gaps = 31/199 (15%)

Query: 860  QNPQAQQGSQAQSQFLHSLTAQAWPMQNMQQQTFASASQSEVPAQPVFYPQAQMSQYPSQ 919
             N   Q+  Q++ + L +          ++              Q    P A+      +
Sbjct: 5    GNNVLQELLQSRRELLTAE------SAQLEAALQLLQEAVNSKRQEEAEPAAE------E 52

Query: 920  SSEQQGLLQSNLAYNQMWQYYYYQQQQQQQLFLQQQHLQLQQQHLQPLQQQQFVQQQ--- 976
            +  Q  L+Q  LA N        QQ ++    L     QL    LQ LQ  + +++Q   
Sbjct: 53   AELQAELIQQELAINDQLSQALNQQTERLNA-LASDDRQLANLLLQLLQSSRTIREQIAV 111

Query: 977  ----------QYQQQHSLYLQQQPQH-----QQLEQYQMQQQVQQQDQHPPQQWQLEQRQ 1021
                        QQ   L    QPQ      Q+ +  Q ++      +   +Q   E R 
Sbjct: 112  LRGSLLLSRILLQQLGPLPEAGQPQEQFEVTQERDALQAEKAYINALEGQAEQLTAEVRD 171

Query: 1022 SEQQIGMSQIEKWNNSSKQ 1040
               QI  ++ E  N+   Q
Sbjct: 172  ILDQILDTRRELLNSLLSQ 190

Length = 835

>gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III C-methyltransferase; Provisional

 Score = 46.2 bits (110), Expect = 5e-05
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 7/85 (8%)

Query: 940  YYYQQQQQQQL-----FLQQQHLQLQQQHLQPLQQQQFVQQQQYQQQHSLYLQQQPQHQQ 994
            YY+ +QQ Q        L  Q   LQ+      Q+ + + +QQ +       QQ    +Q
Sbjct: 55   YYHGKQQAQNQTATNDALANQLTALQKAQESQKQELEGILKQQAKALDQANRQQAALAKQ 114

Query: 995  LEQYQMQQQVQQQDQHPPQQWQLEQ 1019
            L+  ++QQ+V        + W L Q
Sbjct: 115  LD--ELQQKVATISGSDAKTWLLAQ 137

Length = 390

>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional

 Score = 45.4 bits (108), Expect = 6e-05
 Identities = 28/112 (25%), Positives = 39/112 (34%), Gaps = 20/112 (17%)

Query: 910  QAQMSQYPSQSSEQQGLLQSNLAYNQMWQYYYYQQQQQQQLFLQQQHLQLQQQHLQPLQQ 969
            QA M Q P+Q SE        + YN+         Q  Q     +  +Q+QQQ  Q    
Sbjct: 92   QADMRQQPTQLSE--------VPYNE---------QTPQV---PRSTVQIQQQAQQQQPP 131

Query: 970  QQFVQQQQYQQQHSLYLQQQPQHQQLEQYQMQQQVQQQDQHPPQQWQLEQRQ 1021
                Q Q            QPQ     + Q    V Q  + P  + + E+ Q
Sbjct: 132  ATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEAEKEKEQ 183

Length = 256

>gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3

 Score = 46.1 bits (108), Expect = 8e-05
 Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 16/133 (12%)

Query: 909  PQAQMSQYPSQSSEQQGLLQSNLAYNQMWQYYYYQQQQQQQLFLQQQHLQLQ---QQHLQ 965
            P+ +  + P ++   +    +              QQQ +   LQQQ +++Q   QQ  Q
Sbjct: 292  PEGETKKSPMEAGGDRMPQSAPPPAMNPQHIAQLAQQQNKMRLLQQQEMEMQRIEQQRQQ 351

Query: 966  PLQQQQFVQQQQYQQQHSLYLQQQPQHQQLEQY-----------QMQQQV--QQQDQHPP 1012
             +  Q   QQQQ  QQ  + LQQQ Q  QL+Q+           Q  Q     QQ QH  
Sbjct: 352  QIMHQHQQQQQQEHQQQQMLLQQQQQMHQLQQHHQMNGGGQFATQAHQHAAYLQQMQHMR 411

Query: 1013 QQWQLEQRQSEQQ 1025
             Q Q++ +Q + Q
Sbjct: 412  LQEQIQHQQQQAQ 424

The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1. Length = 476

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 45.7 bits (108), Expect = 8e-05
 Identities = 44/145 (30%), Positives = 50/145 (34%), Gaps = 13/145 (8%)

Query: 890  QQTFASASQSEVPAQPVFYPQAQMSQYPSQSSEQQGLL--QSNLAYNQMWQYYYYQQQQQ 947
            Q +   A  SE  +  V   +   +       E       Q N A          Q  QQ
Sbjct: 28   QLSHEEAQSSEAHSFHVDSTKQPPAPEQVAKHELADAPLQQVNAALPPAPAPQSPQPDQQ 87

Query: 948  QQLFLQQQHLQLQQQHLQPLQQQQFVQQQQYQQQHSLYLQ-QQPQHQQLEQYQMQQQ--- 1003
            QQ    Q     Q     P QQ Q V QQ   QQ   Y    QPQ    +Q Q QQ    
Sbjct: 88   QQ---SQAPPSHQYPSQLPPQQVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQPP 144

Query: 1004 ----VQQQDQHPPQQWQLEQRQSEQ 1024
                 QQQ Q PPQQ Q +Q    Q
Sbjct: 145  PQVPQQQQYQSPPQQPQYQQNPPPQ 169

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|214642 smart00386, HAT, HAT (Half-A-TPR) repeats

 Score = 39.8 bits (94), Expect = 1e-04
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 303 GDFDWVVKLYERCLIPCADYPEFWMRYVDFMES 335
           GD +   K+YER L       E W++Y +F E 
Sbjct: 1   GDIERARKIYERALEKFPKSVELWLKYAEFEER 33

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. Length = 33

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 44.9 bits (106), Expect = 2e-04
 Identities = 39/153 (25%), Positives = 45/153 (29%), Gaps = 12/153 (7%)

Query: 876  HSLTAQAWPMQNMQQQTFASASQSEVPAQPVFYPQAQMSQ------YPSQSSEQQGLLQS 929
                     + +   Q   +A       Q     Q Q SQ      YPSQ   QQ     
Sbjct: 52   APEQVAKHELADAPLQQVNAALPPAPAPQSPQPDQQQQSQAPPSHQYPSQLPPQQVQSVP 111

Query: 930  NLAYNQMWQYYYYQQQQQQQLFLQQQHLQLQQQHLQPLQQ--QQFVQQQQYQQQHSLYLQ 987
                 Q   YY    Q Q     Q Q  Q Q     P QQ  Q   QQ QYQQ      Q
Sbjct: 112  QQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQPPPQVPQQQQYQSPPQQPQYQQNPPPQAQ 171

Query: 988  QQPQ----HQQLEQYQMQQQVQQQDQHPPQQWQ 1016
              PQ    + +   YQ Q     +        Q
Sbjct: 172  SAPQVSGLYPEESPYQPQSYPPNEPLPSSMAMQ 204

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 44.0 bits (104), Expect = 3e-04
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 10/84 (11%)

Query: 942  YQQQQQQQLFLQQQHLQLQQQHLQPLQQQQFVQQQQYQQQHSLYLQQQPQHQQLEQYQMQ 1001
            Y +QQQQQ     +  +  ++  +  +QQQ  + QQ Q      L+Q  + +   Q Q +
Sbjct: 64   YNRQQQQQ-----KSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKK 118

Query: 1002 QQVQQQDQHPPQQWQLEQRQSEQQ 1025
            Q  +       +Q  L+Q+Q+E+ 
Sbjct: 119  QAEEAA-----KQAALKQKQAEEA 137

Length = 387

>gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed

 Score = 44.0 bits (105), Expect = 4e-04
 Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 6/109 (5%)

Query: 917  PSQSSEQQGLLQSNLAYNQMWQYYYYQQQQQQQLFLQQQHLQLQQQHLQPLQQQQFVQQQ 976
            P ++   Q L Q      +  +     +Q++Q+L    + L+ Q       QQQQ + + 
Sbjct: 260  PDRAELLQRLQQLQQRLARAMRRR--LEQKRQRLDQLARRLKFQSPERLLAQQQQRLDRL 317

Query: 977  QYQQQHSLYLQQQPQHQQLEQYQMQQQVQQQDQHPPQQWQLEQRQSEQQ 1025
            Q + Q +L  + +   Q+LE+   + Q     Q+P ++ +  Q++ EQ 
Sbjct: 318  QQRLQRALERRLRLAKQRLERLSQRLQQ----QNPQRRIERAQQRLEQL 362

Length = 438

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 43.4 bits (102), Expect = 4e-04
 Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 7/87 (8%)

Query: 942  YQQQQQQQLFL---QQQHLQLQQQHLQPLQQQQFVQQQQYQQQHSLYLQQQPQHQQLEQY 998
            Y + Q QQ      +QQ  + ++Q  + L+ +Q  +Q++ +Q     L+ Q Q +Q E+ 
Sbjct: 64   YGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEA 123

Query: 999  QMQQQVQQQDQHPPQQWQLEQRQSEQQ 1025
            + Q Q++Q+     Q+ Q  +  +EQ+
Sbjct: 124  EKQAQLEQKQ----QEEQARKAAAEQK 146

Length = 387

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 43.9 bits (103), Expect = 6e-04
 Identities = 29/114 (25%), Positives = 37/114 (32%), Gaps = 3/114 (2%)

Query: 898  QSEVPAQPVFYPQAQMSQYPSQSSEQQGLLQSNLAYNQMWQYYYYQQQQQQQLFLQQQHL 957
              +         Q Q  Q P     Q    Q  +A    +Q        Q Q    QQ +
Sbjct: 752  VQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPV 811

Query: 958  QLQQQHLQPLQQQQFVQQQQYQQQHSLYLQQQPQHQQLEQYQMQQQVQQQDQHP 1011
              Q Q+ QP  QQ    Q QY QQ    +  QPQ   L    M+    +    P
Sbjct: 812  APQPQYQQP--QQPVAPQPQY-QQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKP 862

Length = 1355

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 43.1 bits (101), Expect = 6e-04
 Identities = 23/67 (34%), Positives = 25/67 (37%), Gaps = 7/67 (10%)

Query: 958  QLQQQHLQPLQQQQFVQQQQYQQQHSLYLQQQPQHQQLEQYQMQQQVQQQDQHPPQQWQL 1017
              QQ  +Q   QQ  VQ    Q Q       Q   QQ  Q   Q   Q   Q PPQ  Q 
Sbjct: 203  PTQQPTVQNPAQQPTVQNPAQQPQ-------QQPQQQPVQPAQQPTPQNPAQQPPQTEQG 255

Query: 1018 EQRQSEQ 1024
             +R  EQ
Sbjct: 256  HKRSREQ 262

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|225507 COG2959, HemX, Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

 Score = 43.3 bits (102), Expect = 6e-04
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 8/87 (9%)

Query: 939  YYYYQQQQQQQ----LFLQQQ--HLQLQQQHLQPLQQQQFVQQQQYQQQHSLYLQQQPQH 992
            YY+ QQQ   Q      LQQQ   LQL Q++ + L Q + +  QQ  +   L  Q +   
Sbjct: 51   YYFGQQQNVLQTQELQALQQQLKALQLAQENQKLLAQLESLIAQQQAELDRLERQLETLQ 110

Query: 993  QQLEQYQMQQQVQQQDQHPPQQWQLEQ 1019
            +QL +  +Q++V        + W L +
Sbjct: 111  KQLSE--LQKKVATISGSDRKDWLLAE 135

Length = 391

>gnl|CDD|236797 PRK10927, PRK10927, essential cell division protein FtsN; Provisional

 Score = 42.7 bits (100), Expect = 8e-04
 Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 6/98 (6%)

Query: 943  QQQQQQQLFLQQQHLQLQQQHLQPLQQQQFVQQQQYQQQHSLYLQQQPQHQQLEQYQMQQ 1002
            Q   +Q+  L+Q    ++QQ   P Q  +    +Q  +Q    LQ+Q Q QQL +   QQ
Sbjct: 113  QLTPEQRQLLEQMQADMRQQ---PTQLVEVPWNEQTPEQRQQTLQRQRQAQQLAE---QQ 166

Query: 1003 QVQQQDQHPPQQWQLEQRQSEQQIGMSQIEKWNNSSKQ 1040
            ++ QQ +   Q WQ + R S+     +Q  +   +S Q
Sbjct: 167  RLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASTQ 204

Length = 319

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 43.1 bits (101), Expect = 0.001
 Identities = 34/170 (20%), Positives = 52/170 (30%), Gaps = 15/170 (8%)

Query: 847  PMNSRFPSQPLPSQNPQAQQGSQAQSQFLHSLTAQAWPMQNMQQQTFASASQSEVPAQPV 906
            P+     + P+ S +    Q +         +  Q  P     +   A A +        
Sbjct: 336  PVEPVTQTPPVASVDVPPAQPT---------VAWQPVPGPQTGEPVIAPAPEGYPQQSQY 386

Query: 907  FYPQAQMSQYPSQSSEQQGLLQSNLAYNQMWQYYY---YQQQQQQQLFLQQQHLQLQQQH 963
              P  Q ++   Q  + Q    +  A     Q YY    +Q  QQ  +       +    
Sbjct: 387  AQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNA 446

Query: 964  LQPLQQQQFVQQQQYQQQHSLYLQQQPQHQQLEQYQMQQQVQQQDQHPPQ 1013
             Q  +QQ     Q   Q    Y Q   Q      YQ  Q V+QQ    P+
Sbjct: 447  WQAEEQQSTFAPQSTYQTEQTYQQPAAQE---PLYQQPQPVEQQPVVEPE 493

Length = 1355

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 42.2 bits (99), Expect = 0.001
 Identities = 38/167 (22%), Positives = 51/167 (30%), Gaps = 15/167 (8%)

Query: 844 DQMPMNSRFPSQPLPSQNPQAQQGSQAQSQFLHSLTAQAWPMQNMQQQTFASASQSEVPA 903
            Q P + ++PSQ  P Q     Q    Q +  +   +Q  P    Q Q        +VP 
Sbjct: 90  SQAPPSHQYPSQLPPQQVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQPPPQVPQ 149

Query: 904 QPVFYPQAQMSQYPSQSSEQ-QGLLQSNLAYNQMWQYYYYQQQQQQQLFLQQQHLQLQQQ 962
           Q  +    Q  QY      Q Q   Q +  Y    +   YQ Q           + +Q  
Sbjct: 150 QQQYQSPPQQPQYQQNPPPQAQSAPQVSGLYP---EESPYQPQSYPPNEPLPSSMAMQPP 206

Query: 963 HLQPLQQQQF---VQQQQYQQ--------QHSLYLQQQPQHQQLEQY 998
           +      QQF    Q   Y                QQ P  Q  E Y
Sbjct: 207 YSGAPPSQQFYGPPQPSPYMYGGPGGRPNSGFPSGQQPPPSQGQEGY 253

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 41.8 bits (98), Expect = 0.001
 Identities = 31/136 (22%), Positives = 41/136 (30%), Gaps = 6/136 (4%)

Query: 895  SASQSEVPAQPVFYPQAQMSQYPSQSSEQQGLLQSNLAYNQMWQYYYYQQQQQQQLFLQQ 954
            S  Q   P Q   +  A        ++                Q        Q    L  
Sbjct: 46   STKQPPAPEQVAKHELADAPL-QQVNAALPPAPAPQSPQPDQQQQSQAPPSHQYPSQLPP 104

Query: 955  QHLQLQQQHLQPLQQQQFVQQQQ-----YQQQHSLYLQQQPQHQQLEQYQMQQQVQQQDQ 1009
            Q +Q   Q   P Q+  +    Q      QQ  +   Q  PQ  Q +QYQ   Q  Q  Q
Sbjct: 105  QQVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQPPPQVPQQQQYQSPPQQPQYQQ 164

Query: 1010 HPPQQWQLEQRQSEQQ 1025
            +PP Q Q   + S   
Sbjct: 165  NPPPQAQSAPQVSGLY 180

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 41.8 bits (99), Expect = 0.002
 Identities = 37/155 (23%), Positives = 51/155 (32%), Gaps = 49/155 (31%)

Query: 913  MSQYPSQSSEQQGLLQSNLAYNQMWQYYYYQQQQQQQLFLQQQHLQ-------------- 958
            +  Y  Q +EQ    Q N               Q   + L QQ LQ              
Sbjct: 505  LDDYMRQLAEQA---QRNPQQGDQ------PPDQGNSMELTQQDLQRMMDRIEELMESGR 555

Query: 959  -------LQ--QQHLQPLQQQQFVQQQQYQQQHSL-----YLQQQPQHQQL--------- 995
                   L+  QQ ++ LQ  Q  Q  Q + Q ++      L++Q   Q L         
Sbjct: 556  RAEAQQLLEQLQQMMENLQVTQGGQGGQSEMQQAMEGLGETLREQ---QGLSDETFRDLQ 612

Query: 996  EQYQMQQQVQQQDQHPPQQWQLEQRQSEQQIGMSQ 1030
            EQ+  Q+  QQ  Q    Q Q +  Q  QQ    Q
Sbjct: 613  EQFNAQRGEQQGQQGQGGQGQGQPGQQGQQGQGQQ 647

Length = 820

>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 31/158 (19%), Positives = 43/158 (27%), Gaps = 19/158 (12%)

Query: 824 KRQHQQRRFSSQRYPRNESGDQMPMNSRFPSQPLPSQNPQAQQGSQAQSQFLHSLTAQAW 883
           +R H Q +F   +    +     PM       P   Q PQ Q   Q             W
Sbjct: 367 RRAHLQDQFMQLQPRMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQ----------PLGW 416

Query: 884 PMQNMQQQTFASASQSEVPAQPVFYPQAQMSQYPSQSSEQQGLLQSNLAYNQMWQYYYYQ 943
           P  +M      +      P +P       M+   + S   Q   Q       M+   Y  
Sbjct: 417 PRMSM----MPTPMGPGGPLRPNGLA--PMNAVRAPSRNAQNAAQKPPMQPVMYPPNYQS 470

Query: 944 QQQQQQLFLQQQHLQLQQQHLQPLQQQQFVQQQQYQQQ 981
               Q L    Q      Q  Q  +  Q +     Q Q
Sbjct: 471 LPLSQDL---PQPQSTASQGGQNKKLAQVLASATPQMQ 505

These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis (GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ), broadly expressed (SP:P11940_PABP1) and of unknown tissue range (SP:Q15097_PABP2). Length = 562

>gnl|CDD|234937 PRK01294, PRK01294, lipase chaperone; Provisional

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 40/185 (21%), Positives = 62/185 (33%), Gaps = 37/185 (20%)

Query: 863  QAQQGSQAQSQFLHSLTAQAWPMQNMQQQTFASASQSEVPAQPVF-----YPQAQM---- 913
               +        L +L         ++ + F     S+   Q  F     Y +  +    
Sbjct: 142  AQLEDDGPGKLDLQALQQLLDARLALRARFF-----SDWEIQAFFGEENQYQRYALERLR 196

Query: 914  -SQYPSQSSEQQGLLQSNLAYNQMWQYYYYQQQQQQQLFLQQQHLQLQQQHLQP----LQ 968
             +Q PS S  Q+    + L            Q+ Q+Q  L QQ  QLQ     P    L 
Sbjct: 197  IAQDPSLSDAQKAARLAALEAQLPEDLRAALQESQRQQALLQQLAQLQASGASPQELRLM 256

Query: 969  QQQFV-------------QQQQYQQQHSLYLQQQPQ---HQQLEQYQMQQQVQQ--QDQH 1010
            + Q V             Q+  +QQ++  YL Q+ Q      L     Q Q+ Q  Q + 
Sbjct: 257  RAQLVGPEAAQRLEQLDQQRAAWQQRYDDYLAQRAQILNAAGLSPQDRQAQIAQLRQQRF 316

Query: 1011 PPQQW 1015
             PQ+ 
Sbjct: 317  SPQEA 321

Length = 336

>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 29/108 (26%), Positives = 37/108 (34%), Gaps = 3/108 (2%)

Query: 915  QYPSQSSEQQG--LLQSNLAYNQMWQYYYYQQQQQQQLFLQQQHLQLQQQHLQPLQ-QQQ 971
             YPS   E  G  L    +  +Q     +  Q       L  Q   + QQ L P+  Q  
Sbjct: 22   PYPSYGYEPMGGWLHHQIIPVSQQHPPTHTLQPHHHIPVLPAQQPVVPQQPLMPVPGQHS 81

Query: 972  FVQQQQYQQQHSLYLQQQPQHQQLEQYQMQQQVQQQDQHPPQQWQLEQ 1019
                Q +Q       QQ  Q Q L+  Q QQ +Q Q    P      Q
Sbjct: 82   MTPTQHHQPNLPQPAQQPFQPQPLQPPQPQQPMQPQPPVHPIPPLPPQ 129

They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1043
KOG2047	835	consensus mRNA splicing factor [RNA processing and	100.0
KOG0495	913	consensus HAT repeat protein [RNA processing and m	100.0
KOG1258	577	consensus mRNA processing protein [RNA processing	100.0
KOG1915	677	consensus Cell cycle control protein (crooked neck	100.0
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	100.0
KOG1915	677	consensus Cell cycle control protein (crooked neck	100.0
KOG0495	913	consensus HAT repeat protein [RNA processing and m	100.0
KOG2047	835	consensus mRNA splicing factor [RNA processing and	100.0
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	99.97
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	99.93
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	99.88
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.85
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	99.84
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.84
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.83
KOG1258	577	consensus mRNA processing protein [RNA processing	99.82
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	99.79
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	99.79
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.78
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.78
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.77
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.75
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.75
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.74
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.72
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.72
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.64
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	99.62
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	99.62
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	99.62
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.59
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.58
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.53
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	99.5
KOG2076	895	consensus RNA polymerase III transcription factor	99.5
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.47
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.45
PLN03218	1060	maturation of RBCL 1; Provisional	99.45
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.45
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.44
PLN03218	1060	maturation of RBCL 1; Provisional	99.42
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	99.42
PRK14574	822	hmsH outer membrane protein; Provisional	99.41
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.4
PLN03077	857	Protein ECB2; Provisional	99.4
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.4
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.35
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.33
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.32
KOG2076	895	consensus RNA polymerase III transcription factor	99.27
PLN03077	857	Protein ECB2; Provisional	99.26
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.23
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.21
PRK14574	822	hmsH outer membrane protein; Provisional	99.2
PRK12370	553	invasion protein regulator; Provisional	99.2
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.18
PRK12370	553	invasion protein regulator; Provisional	99.18
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.17
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	99.16
KOG1126	638	consensus DNA-binding cell division cycle control	99.16
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.13
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.13
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.06
PRK11189	296	lipoprotein NlpI; Provisional	99.03
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.0
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.99
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.95
PRK11189	296	lipoprotein NlpI; Provisional	98.93
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.88
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.84
KOG1126	638	consensus DNA-binding cell division cycle control	98.78
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.77
KOG1125	579	consensus TPR repeat-containing protein [General f	98.71
COG5191	435	Uncharacterized conserved protein, contains HAT (H	98.7
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.69
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.65
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.64
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.64
KOG2003	840	consensus TPR repeat-containing protein [General f	98.64
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.62
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.62
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.62
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.61
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.6
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.56
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.56
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.55
COG5191	435	Uncharacterized conserved protein, contains HAT (H	98.54
PRK15359	144	type III secretion system chaperone protein SscB;	98.53
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	98.51
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.51
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.49
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.48
PLN02789	320	farnesyltranstransferase	98.48
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.44
PRK15359	144	type III secretion system chaperone protein SscB;	98.44
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.43
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.41
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.4
PLN02789	320	farnesyltranstransferase	98.34
KOG1129	478	consensus TPR repeat-containing protein [General f	98.33
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.32
KOG3598	2220	consensus Thyroid hormone receptor-associated prot	98.3
KOG1125	579	consensus TPR repeat-containing protein [General f	98.3
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.23
KOG1129	478	consensus TPR repeat-containing protein [General f	98.22
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.22
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.19
KOG3598	2220	consensus Thyroid hormone receptor-associated prot	98.19
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.19
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.18
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.18
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.16
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.13
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.11
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.11
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.09
PF08311	126	Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro	98.07
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.06
PF08311	126	Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro	98.06
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.04
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.03
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.94
smart00777	125	Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region	97.93
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	97.92
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.9
KOG2003	840	consensus TPR repeat-containing protein [General f	97.89
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.87
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.83
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.81
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.79
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.79
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	97.79
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.74
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.71
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.69
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.64
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.64
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.55
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.54
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.53
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	97.5
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	97.48
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.47
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.45
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.44
smart00777	125	Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region	97.41
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.4
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.39
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.39
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.38
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.3
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.29
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.28
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.26
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.25
KOG0553	304	consensus TPR repeat-containing protein [General f	97.25
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.21
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.17
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.16
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.15
KOG0553	304	consensus TPR repeat-containing protein [General f	97.12
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.11
PF12688	120	TPR_5: Tetratrico peptide repeat	97.1
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.08
PRK04841	903	transcriptional regulator MalT; Provisional	97.06
PF13428	44	TPR_14: Tetratricopeptide repeat	97.04
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.04
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.03
PRK04841	903	transcriptional regulator MalT; Provisional	97.0
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	96.98
PRK10803	263	tol-pal system protein YbgF; Provisional	96.97
PF02184	32	HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107	96.94
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	96.87
PF13371	73	TPR_9: Tetratricopeptide repeat	96.76
PRK11906	458	transcriptional regulator; Provisional	96.71
PRK10803	263	tol-pal system protein YbgF; Provisional	96.68
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	96.68
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.67
PF13371	73	TPR_9: Tetratricopeptide repeat	96.63
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	96.59
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.56
PF13428	44	TPR_14: Tetratricopeptide repeat	96.56
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	96.44
PRK11906	458	transcriptional regulator; Provisional	96.38
PF02184	32	HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107	96.32
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	96.28
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.1
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.07
PRK15331	165	chaperone protein SicA; Provisional	96.04
KOG3616	1636	consensus Selective LIM binding factor [Transcript	95.8
KOG3616	1636	consensus Selective LIM binding factor [Transcript	95.8
PF12688	120	TPR_5: Tetratrico peptide repeat	95.58
KOG1585	308	consensus Protein required for fusion of vesicles	95.55
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	95.53
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.4
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.27
PRK15331	165	chaperone protein SicA; Provisional	95.23
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.22
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	95.22
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.21
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.21
COG4700	251	Uncharacterized protein conserved in bacteria cont	95.2
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	95.17
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.08
COG3898	531	Uncharacterized membrane-bound protein [Function u	95.04
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	94.97
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	94.91
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	94.89
KOG4555	175	consensus TPR repeat-containing protein [Function	94.87
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	94.79
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	94.75
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	94.73
PF13431	34	TPR_17: Tetratricopeptide repeat	94.65
KOG3785	557	consensus Uncharacterized conserved protein [Funct	94.62
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	94.58
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	94.49
COG4700	251	Uncharacterized protein conserved in bacteria cont	94.37
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	94.0
COG0457	291	NrfG FOG: TPR repeat [General function prediction	93.9
PF13431	34	TPR_17: Tetratricopeptide repeat	93.7
KOG4555	175	consensus TPR repeat-containing protein [Function	93.64
KOG4234	271	consensus TPR repeat-containing protein [General f	93.54
KOG4234	271	consensus TPR repeat-containing protein [General f	93.52
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	93.51
PF03704	146	BTAD: Bacterial transcriptional activator domain;	93.46
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	93.3
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	93.27
KOG1972	913	consensus Uncharacterized conserved protein [Funct	93.18
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	92.9
PF13512	142	TPR_18: Tetratricopeptide repeat	92.16
KOG0889	3550	consensus Histone acetyltransferase SAGA, TRRAP/TR	92.12
KOG1586	288	consensus Protein required for fusion of vesicles	91.48
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	91.33
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	91.29
PF13512	142	TPR_18: Tetratricopeptide repeat	91.18
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	91.06
KOG4648	536	consensus Uncharacterized conserved protein, conta	90.99
PF15297	353	CKAP2_C: Cytoskeleton-associated protein 2 C-termi	90.64
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	90.62
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	90.06
KOG1585	308	consensus Protein required for fusion of vesicles	89.9
KOG4648	536	consensus Uncharacterized conserved protein, conta	89.88
PF11498	468	Activator_LAG-3: Transcriptional activator LAG-3;	89.46
KOG1586	288	consensus Protein required for fusion of vesicles	89.03
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	88.75
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	88.73
COG1747	711	Uncharacterized N-terminal domain of the transcrip	88.44
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	88.42
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	87.97
PF03154	982	Atrophin-1: Atrophin-1 family; InterPro: IPR002951	87.23
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	86.85
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	86.8
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	85.32
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	85.31
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	85.03
PF15297	353	CKAP2_C: Cytoskeleton-associated protein 2 C-termi	84.76
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	84.71
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	84.67
PF09770	808	PAT1: Topoisomerase II-associated protein PAT1; In	84.5
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	84.19
COG3898	531	Uncharacterized membrane-bound protein [Function u	84.14
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	83.86
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	83.68
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	83.48
COG3118	304	Thioredoxin domain-containing protein [Posttransla	83.47
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	83.21
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	83.06
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	82.36
KOG2041	1189	consensus WD40 repeat protein [General function pr	81.74
COG3629	280	DnrI DNA-binding transcriptional activator of the	81.39
KOG2041	1189	consensus WD40 repeat protein [General function pr	80.89
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	80.66
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	80.47
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	80.23
KOG2610	491	consensus Uncharacterized conserved protein [Funct	80.21

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=100.00  E-value=1.6e-74  Score=645.66  Aligned_cols=550  Identities=17%  Similarity=0.261  Sum_probs=451.4

Q ss_pred             CCCCCCCCccHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------
Q 001619           13 AEPNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARL------   86 (1043)
Q Consensus        13 ~~~~~~~~~~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~------   86 (1043)
                      ++.|..++.++.+||+.|.+||+++++|.+||++...   .+.++++.+|||||+.+|.|+++|+.|++.....      
T Consensus         3 ~n~dl~~~~EDvpfEeEilRnp~svk~W~RYIe~k~~---sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~   79 (835)
T KOG2047|consen    3 ENVDLNFENEDVPFEEEILRNPFSVKCWLRYIEHKAG---SPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCP   79 (835)
T ss_pred             CCccccccccccchHHHHHcCchhHHHHHHHHHHHcc---CChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCC
Confidence            4567778888999999999999999999999998766   5888999999999999999999999999776543      


Q ss_pred             --CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhH
Q 001619           87 --CSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSL  164 (1043)
Q Consensus        87 --~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a  164 (1043)
                        .-++.+..+|||||.+++++++||+.|+.|++++ ++++.+|++|+|||+++|.+. +.+||..|++|.++++-.+.+
T Consensus        80 T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q-~~iT~tR~tfdrALraLpvtq-H~rIW~lyl~Fv~~~~lPets  157 (835)
T KOG2047|consen   80 TDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQ-GLITRTRRTFDRALRALPVTQ-HDRIWDLYLKFVESHGLPETS  157 (835)
T ss_pred             CChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-chHHHHHHHHHHHHHhCchHh-hccchHHHHHHHHhCCChHHH
Confidence              1378999999999999999999999999999999 999999999999999999988 689999999999999999999


Q ss_pred             HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHh-------hh-----hhhhhh-HHHH------------------HHhhh
Q 001619          165 AQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEE-------LE-----CESDSA-MEFQ------------------SELVL  213 (1043)
Q Consensus       165 ~~iy~raL~~p~~~l~~~~~~y~~~~~~~~e~-------l~-----~~~~~~-~~~~------------------~e~i~  213 (1043)
                      .++|+|+|++.+...+.+.+ |....+.++++       ++     ++.+++ ...|                  .+.|+
T Consensus       158 ~rvyrRYLk~~P~~~eeyie-~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaii  236 (835)
T KOG2047|consen  158 IRVYRRYLKVAPEAREEYIE-YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAII  236 (835)
T ss_pred             HHHHHHHHhcCHHHHHHHHH-HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHH
Confidence            99999999987665444433 22222222221       11     111111 1111                  22355


Q ss_pred             ccccccCccc--hhhhHHHHhhcCCchhhHHHHHHHHHH-----HHH--HHHHHH-------------------------
Q 001619          214 EGEVPAYYKD--DETSSVIKDLLDPSVDLVRSKAIQKYR-----FIG--EQIYKE-------------------------  259 (1043)
Q Consensus       214 ~~~l~~~~~~--~e~~~~i~~~~~~~~~~e~ar~i~~~~-----~~~--~~~y~~-------------------------  259 (1043)
                      ++.+. .++|  ..+|+.+++|+.+.|.+++||++|+..     +++  ..+|+.                         
T Consensus       237 R~gi~-rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed  315 (835)
T KOG2047|consen  237 RGGIR-RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEED  315 (835)
T ss_pred             Hhhcc-cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhh
Confidence            55554 3444  367999999999999999999999852     122  122220                         


Q ss_pred             HHHHHHHHHHHHHHhcccC-CCCCC---CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhcc------CCCcHHHHHHH
Q 001619          260 ASQLDEKINCFENLIRRPY-FHVKP---LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIP------CADYPEFWMRY  329 (1043)
Q Consensus       260 a~~~~~~~~~fE~~i~r~~-~~~~~---~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~------~~~~~~LWl~y  329 (1043)
                      ..++...+..||.+|.+.. +.+.+   +||++++.|++++.+.  .|+..+.+.+|.+||..      .++...||..|
T Consensus       316 ~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~f  393 (835)
T KOG2047|consen  316 DVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEF  393 (835)
T ss_pred             hhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHH
Confidence            0122345678898886543 33332   7999999999999998  68899999999999963      57889999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHHhc---ccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCC-----------------
Q 001619          330 VDFMESKGGREIASYALDRATQIFLK---RLPVIHLFNARYKEQIGDTSAARAAFPESYIDSD-----------------  389 (1043)
Q Consensus       330 Ak~~e~~g~~e~Ar~ilerA~~~~~~---~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~-----------------  389 (1043)
                      |+|||.+|+++.||.+|++|+++..+   +++.+||.||++|.++.++++|++++++|+..+.                 
T Consensus       394 aklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rl  473 (835)
T KOG2047|consen  394 AKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARL  473 (835)
T ss_pred             HHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHH
Confidence            99999999999999999999997544   4578999999999999999999999999986431                 


Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHH--------------------------
Q 001619          390 SRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLT--------------------------  443 (1043)
Q Consensus       390 ~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~--------------------------  443 (1043)
                      .+++++|.+|+++|+.+|.++++|++|++.|++++++      |.+.++||.|+                          
T Consensus       474 hrSlkiWs~y~DleEs~gtfestk~vYdriidLriaT------Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~  547 (835)
T KOG2047|consen  474 HRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIAT------PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY  547 (835)
T ss_pred             HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC------HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence            4678999999999999999999999999999998876      55555554331                          


Q ss_pred             --H-HHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 001619          444 --Y-TELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHT  520 (1043)
Q Consensus       444 --~-~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~~p~~  520 (1043)
                        | +++.+|..++|+.+ +||||+|||+||+.||.       ++.++|+.+|..||+++|.+++++.+|+||+.+++..
T Consensus       548 diW~tYLtkfi~rygg~k-lEraRdLFEqaL~~Cpp-------~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a  619 (835)
T KOG2047|consen  548 DIWNTYLTKFIKRYGGTK-LERARDLFEQALDGCPP-------EHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEA  619 (835)
T ss_pred             HHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHH
Confidence              1 45567888899987 99999999999999885       5889999999999999999999999999999999999


Q ss_pred             ccccccCccchhhhHHHh----hhhhhhhhhhcCC-cccccccccccccccccCC------CCCcCCCccCCCCCCCC
Q 001619          521 VRTAYECPGRETKSLRAF----IRGKRESNVASLP-QPFESEHLMPSASQDKKFS------PPEKSDSESGDDATSLP  587 (1043)
Q Consensus       521 ~~~~~~~~~~k~~s~~~~----~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~l~------~~~~~~~~~~~~~~~~~  587 (1043)
                      .+..+++. +++|+++.+    .|..++++|..|| ..+++|||||+++|+ +||      +||+||||+||||++-.
T Consensus       620 ~~l~myni-~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEt-klGEidRARaIya~~sq~~dPr~~~~  695 (835)
T KOG2047|consen  620 QRLDMYNI-YIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLET-KLGEIDRARAIYAHGSQICDPRVTTE  695 (835)
T ss_pred             HHHHHHHH-HHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhh-hhhhHHHHHHHHHhhhhcCCCcCChH
Confidence            99777774 666767777    4666799999999 999999998888887 699      49999999999999943

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=100.00  E-value=9e-54  Score=479.19  Aligned_cols=454  Identities=16%  Similarity=0.227  Sum_probs=378.5

Q ss_pred             cHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001619           22 GKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQ  101 (1043)
Q Consensus        22 ~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~  101 (1043)
                      --.....+|+.+|.++.+|+++++ ++    .+....++|+++||+.+|.|++||+..+++|.    .+.||.+++||++
T Consensus       334 aK~vvA~Avr~~P~Sv~lW~kA~d-LE----~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~----~~darilL~rAve  404 (913)
T KOG0495|consen  334 AKTVVANAVRFLPTSVRLWLKAAD-LE----SDTKNKKRVLRKALEHIPRSVRLWKAAVELEE----PEDARILLERAVE  404 (913)
T ss_pred             HHHHHHHHHHhCCCChhhhhhHHh-hh----hHHHHHHHHHHHHHHhCCchHHHHHHHHhccC----hHHHHHHHHHHHH
Confidence            345678899999999999999999 67    47888899999999999999999999999984    4679999999999


Q ss_pred             hcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhc-CCCccHH
Q 001619          102 SATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLR-FPSKKLH  180 (1043)
Q Consensus       102 ~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~-~p~~~l~  180 (1043)
                      +||.|++||++|+++     .+++.|++|+++|.+.+|+   ++.||+..+++|+..|+.+.+.+|+.|+|. +-.....
T Consensus       405 ccp~s~dLwlAlarL-----etYenAkkvLNkaRe~ipt---d~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~  476 (913)
T KOG0495|consen  405 CCPQSMDLWLALARL-----ETYENAKKVLNKAREIIPT---DREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVE  476 (913)
T ss_pred             hccchHHHHHHHHHH-----HHHHHHHHHHHHHHhhCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhccee
Confidence            999999999999999     6889999999999999999   568999999999999999999999999974 2222211


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCC------chhhHHHHHHHHHHHHHH
Q 001619          181 HYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDP------SVDLVRSKAIQKYRFIGE  254 (1043)
Q Consensus       181 ~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~------~~~~e~ar~i~~~~~~~~  254 (1043)
                      .   ....|+..   +.+|+..+++ ..+..|+...++.+..++|...   .|.++      .+.++.+|+||.      
T Consensus       477 i---~rdqWl~e---Ae~~e~agsv-~TcQAIi~avigigvEeed~~~---tw~~da~~~~k~~~~~carAVya------  540 (913)
T KOG0495|consen  477 I---NRDQWLKE---AEACEDAGSV-ITCQAIIRAVIGIGVEEEDRKS---TWLDDAQSCEKRPAIECARAVYA------  540 (913)
T ss_pred             e---cHHHHHHH---HHHHhhcCCh-hhHHHHHHHHHhhccccchhHh---HHhhhHHHHHhcchHHHHHHHHH------
Confidence            1   12233332   3334333222 3344555555555555554432   23332      233444444443      


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Q 001619          255 QIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFME  334 (1043)
Q Consensus       255 ~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e  334 (1043)
                                       .+|.        .+|.+..+|...+.|++.+|+.+++..+|++||..||+.+.||++||+.+|
T Consensus       541 -----------------~alq--------vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w  595 (913)
T KOG0495|consen  541 -----------------HALQ--------VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKW  595 (913)
T ss_pred             -----------------HHHh--------hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHH
Confidence                             3333        678899999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHH
Q 001619          335 SKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACD  414 (1043)
Q Consensus       335 ~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~  414 (1043)
                      ..||+..||.++..|+.. .+++.+||++.+++|.++..+++||.+|.+|...  ....++|++++.||+.+|++++|+.
T Consensus       596 ~agdv~~ar~il~~af~~-~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~r  672 (913)
T KOG0495|consen  596 KAGDVPAARVILDQAFEA-NPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALR  672 (913)
T ss_pred             hcCCcHHHHHHHHHHHHh-CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHH
Confidence            999999999999999987 8889999999999999999999999999999853  3358999999999999999999999


Q ss_pred             HHHHHHHHHHhhccCCccHHHHHHH------------HHHHH--------------HHHHHHHHHhCCCchHHHHHHHHH
Q 001619          415 TYKEALETAAEQRKFHTLPLLYVQF------------SRLTY--------------TELIKFTMVHGGRSHISIVDAVIS  468 (1043)
Q Consensus       415 lyekale~~~~~~~~p~~~~l~~~~------------ar~~~--------------~~~~~fe~~~g~~~~leraR~l~e  468 (1043)
                      +++++|+.      ||.++++|++.            ||..|              +.++++|++.|.   +-|||++|+
T Consensus       673 llEe~lk~------fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~---~~rAR~ild  743 (913)
T KOG0495|consen  673 LLEEALKS------FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQ---LVRARSILD  743 (913)
T ss_pred             HHHHHHHh------CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcc---hhhHHHHHH
Confidence            99999998      89999999997            44444              677889999886   568999999


Q ss_pred             HHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc------ccccCccchhhhHHHhhhhh
Q 001619          469 NALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVR------TAYECPGRETKSLRAFIRGK  542 (1043)
Q Consensus       469 rAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~~p~~~~------~~~~~~~~k~~s~~~~~~~~  542 (1043)
                      +++.+||++         ..+|..-+.+|.+.|+.+.|..++.||++.||.+|.      .+++++.||+||.|||++|.
T Consensus       744 rarlkNPk~---------~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce  814 (913)
T KOG0495|consen  744 RARLKNPKN---------ALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE  814 (913)
T ss_pred             HHHhcCCCc---------chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhcc
Confidence            999999998         456777777777899999999999999999999998      58899999999999999999


Q ss_pred             hhh-hhhcCCccc
Q 001619          543 RES-NVASLPQPF  554 (1043)
Q Consensus       543 ~~~-~i~~~~~~~  554 (1043)
                      +++ ++.++++.|
T Consensus       815 ~dphVllaia~lf  827 (913)
T KOG0495|consen  815 HDPHVLLAIAKLF  827 (913)
T ss_pred             CCchhHHHHHHHH
Confidence            877 777777444

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=100.00  E-value=1.7e-45  Score=417.78  Aligned_cols=493  Identities=37%  Similarity=0.643  Sum_probs=403.7

Q ss_pred             CCCCCCCCccHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 001619           13 AEPNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKV   92 (1043)
Q Consensus        13 ~~~~~~~~~~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a   92 (1043)
                      ..+.+.--.+.+.+.+.+..+--++++|..+|......  .+++.+|.+|..+|..+|+++++|++|+.+|.+.|+.+++
T Consensus        21 ~n~~~~~~p~~~~~we~~~~~~~~f~~wt~li~~~~~~--~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s   98 (577)
T KOG1258|consen   21 DNTSLTKYPDSLDYWEILSNDSLDFDAWTTLIQENDSI--EDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENS   98 (577)
T ss_pred             cchhhhhCcchhhHhhccccchhcccchHHHHhccCch--hHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHH
Confidence            33444445577889999999999999998888865554  6789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHh
Q 001619           93 VEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTL  172 (1043)
Q Consensus        93 ~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL  172 (1043)
                      .+||||+|..+|.|++||+.|+.|+....++.+.+|++|++|+..+|.+|.|+++|..|++||...+++..+..||+|.|
T Consensus        99 ~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRil  178 (577)
T KOG1258|consen   99 VKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERIL  178 (577)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            99999999999999999999999999887899999999999999999999999999999999999999999999999999


Q ss_pred             cCCCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhcccc-ccCccchhhhHHHHhhcCCchhhHHHHH-HHHHH
Q 001619          173 RFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEV-PAYYKDDETSSVIKDLLDPSVDLVRSKA-IQKYR  250 (1043)
Q Consensus       173 ~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l-~~~~~~~e~~~~i~~~~~~~~~~e~ar~-i~~~~  250 (1043)
                      .+|+..+..++..|..+++.....+....+...........+..+ ......++....+.+..+.++..+.++. +.++.
T Consensus       179 eiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~  258 (577)
T KOG1258|consen  179 EIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV  258 (577)
T ss_pred             hhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH
Confidence            999999999999999998875443322221111111111110000 0112233444456666677777776663 34455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHH
Q 001619          251 FIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYV  330 (1043)
Q Consensus       251 ~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yA  330 (1043)
                      .++..+|........+++.||..|+|+|+|+.++++.+...|..|++|+.+.|+++++..+|+||+.+|..+.++|++|+
T Consensus       259 ~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~  338 (577)
T KOG1258|consen  259 SIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYA  338 (577)
T ss_pred             HHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHH
Confidence            67788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHH
Q 001619          331 DFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFV  410 (1043)
Q Consensus       331 k~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e  410 (1043)
                      +|++..|+.+.|..++.+|++++.+..|.|.+.||.|++..||++.|+.+|.+..... |..+.+-++++.+|++.|+.+
T Consensus       339 ~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~  417 (577)
T KOG1258|consen  339 RWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLE  417 (577)
T ss_pred             HHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchh
Confidence            9999999999999999999999999999999999999999999999999999999876 888999999999999999999


Q ss_pred             HHHH---HHHHHHHHHHhhccCCccHHHHHHHHHHHH---------------------------HHHHHHHHHhCCCchH
Q 001619          411 AACD---TYKEALETAAEQRKFHTLPLLYVQFSRLTY---------------------------TELIKFTMVHGGRSHI  460 (1043)
Q Consensus       411 ~Ar~---lyekale~~~~~~~~p~~~~l~~~~ar~~~---------------------------~~~~~fe~~~g~~~~l  460 (1043)
                      .+..   +|...++-   +.....+.+++++|+|+.|                           ..+++|+...+.....
T Consensus       418 ~~~~~~~l~s~~~~~---~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~  494 (577)
T KOG1258|consen  418 DANYKNELYSSIYEG---KENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSGREY  494 (577)
T ss_pred             hhhHHHHHHHHhccc---ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcchhh
Confidence            9994   43333332   2223335789999988766                           4567777777654445


Q ss_pred             HHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 001619          461 SIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLF  517 (1043)
Q Consensus       461 eraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~~  517 (1043)
                      +....++...+..-.+.....+..+      .|++|.+..|+...+.....++++.+
T Consensus       495 d~~e~~~~~~~~~~~~~~~~~~~~~------k~~ef~e~~g~~~~~~~~~~~~l~~~  545 (577)
T KOG1258|consen  495 DLLEPIDWKELKMLIDFDDSRSSTD------KYIEFLEWFGIDHKGAQDERPHLKNF  545 (577)
T ss_pred             hhhhhHHHHHHhhhccccccccchH------HHHHHHHhccchhHhHhhchHHHHHH
Confidence            6667777666643322222222222      29999999999999998888888887

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.1e-45  Score=401.84  Aligned_cols=455  Identities=18%  Similarity=0.254  Sum_probs=369.7

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001619           23 KQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQS  102 (1043)
Q Consensus        23 ~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~  102 (1043)
                      -..+|..|++|-.+...|++|+..-+..  .++..+|.||||||...-.+..||++|+++|+++..+..||+|+.||+..
T Consensus        59 RkefEd~irrnR~~~~~WikYaqwEesq--~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~  136 (677)
T KOG1915|consen   59 RKEFEDQIRRNRLNMQVWIKYAQWEESQ--KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI  136 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh
Confidence            3568889999999999999999987766  79999999999999999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHh-cCCCccHHH
Q 001619          103 ATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTL-RFPSKKLHH  181 (1043)
Q Consensus       103 ~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL-~~p~~~l~~  181 (1043)
                      +|.--.+|..|+-++... |+++.||.+|+|=+.--|    ....|..|++||.++..++.||.||.|.+ ..|.-..|.
T Consensus       137 lPRVdqlWyKY~ymEE~L-gNi~gaRqiferW~~w~P----~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wi  211 (677)
T KOG1915|consen  137 LPRVDQLWYKYIYMEEML-GNIAGARQIFERWMEWEP----DEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWI  211 (677)
T ss_pred             cchHHHHHHHHHHHHHHh-cccHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHH
Confidence            999999999999988777 999999999999988766    46799999999999999999999999995 567667788


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 001619          182 YYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEAS  261 (1043)
Q Consensus       182 ~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~  261 (1043)
                      .|++|++..+...         ..+.+++..++..- .....+.+-...+.|.+..++.+|||.||+|.... ..-.++.
T Consensus       212 kyarFE~k~g~~~---------~aR~VyerAie~~~-~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~rae  280 (677)
T KOG1915|consen  212 KYARFEEKHGNVA---------LARSVYERAIEFLG-DDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAE  280 (677)
T ss_pred             HHHHHHHhcCcHH---------HHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHH
Confidence            8888877655422         23455555443221 00001122334567778889999999999974211 0012234


Q ss_pred             HHHHHHHHHHHH----------h--ccc--CCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCC-------
Q 001619          262 QLDEKINCFENL----------I--RRP--YFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCA-------  320 (1043)
Q Consensus       262 ~~~~~~~~fE~~----------i--~r~--~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~-------  320 (1043)
                      +++.++..||+.          |  +|.  |......||.+++.|..|+.+++..|+.++++.+|||||...|       
T Consensus       281 eL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~  360 (677)
T KOG1915|consen  281 ELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRY  360 (677)
T ss_pred             HHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHH
Confidence            444444444442          2  121  2222336899999999999999999999999999999997543       


Q ss_pred             --CcHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHhc----ccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhH
Q 001619          321 --DYPEFWMRYVDFMES-KGGREIASYALDRATQIFLK----RLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFI  393 (1043)
Q Consensus       321 --~~~~LWl~yAk~~e~-~g~~e~Ar~ilerA~~~~~~----~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~  393 (1043)
                        .+.-||++||-|.+. ..|++.+|.||.+|+.+ .|    ..++||++||.||.|+.++..||+++.+|+.. +|+ .
T Consensus       361 W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~-cPK-~  437 (677)
T KOG1915|consen  361 WRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK-CPK-D  437 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc-CCc-h
Confidence              456899999999875 56899999999999986 44    35689999999999999999999999999975 454 6


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhc
Q 001619          394 EKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYS  473 (1043)
Q Consensus       394 ~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~~  473 (1043)
                      +++..|++||..++++|++|++|++-|+.      .|.....|        ..|++||...|+   .+|+|+||+-|++.
T Consensus       438 KlFk~YIelElqL~efDRcRkLYEkfle~------~Pe~c~~W--------~kyaElE~~Lgd---tdRaRaifelAi~q  500 (677)
T KOG1915|consen  438 KLFKGYIELELQLREFDRCRKLYEKFLEF------SPENCYAW--------SKYAELETSLGD---TDRARAIFELAISQ  500 (677)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHhc------ChHhhHHH--------HHHHHHHHHhhh---HHHHHHHHHHHhcC
Confidence            79999999999999999999999999996      66656566        455778888888   56999999999985


Q ss_pred             CCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Q 001619          474 RPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVR  522 (1043)
Q Consensus       474 ~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~~p~~~~  522 (1043)
                      ..       .+.++.+|..|++||-..|..+.++++|.|.+..-++..-
T Consensus       501 p~-------ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kv  542 (677)
T KOG1915|consen  501 PA-------LDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKV  542 (677)
T ss_pred             cc-------cccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchH
Confidence            32       2678999999999999999999999999999998776543

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=100.00  E-value=2.2e-39  Score=358.96  Aligned_cols=434  Identities=20%  Similarity=0.335  Sum_probs=348.3

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 001619           25 GLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSAT  104 (1043)
Q Consensus        25 ~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P  104 (1043)
                      ..++.|+.||+|++.|..+|++++.   .+++++|.+||+.+..||.+...|+.||+.|....+++.+.++|.|+|.. -
T Consensus         8 ~~~~rie~nP~di~sw~~lire~qt---~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk-v   83 (656)
T KOG1914|consen    8 NPRERIEENPYDIDSWSQLIREAQT---QPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK-V   83 (656)
T ss_pred             CHHHHHhcCCccHHHHHHHHHHHcc---CCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-H
Confidence            3488999999999999999998876   58999999999999999999999999999999999999999999999998 5


Q ss_pred             CCHHHHHHHHHHHHhhCCCh----HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH---------hhhhhhHHHHHHHH
Q 001619          105 YSVDVWFHYCSLSMSTFEDP----NDVRRLFKRALSFVGKDYLCHTMWDKYIEFEIS---------QQRWSSLAQIFVQT  171 (1043)
Q Consensus       105 ~s~~LWl~Y~~~~~~~~~~~----e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~---------~~~~e~a~~iy~ra  171 (1043)
                      .+++||..|+.|..+..+..    +.....|+-|+..+|++..|..||..|+.|.+.         ...++.+|++|.|+
T Consensus        84 LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqra  163 (656)
T KOG1914|consen   84 LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRA  163 (656)
T ss_pred             hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHH
Confidence            67999999999998874443    345677999999999999999999999999974         34688999999999


Q ss_pred             hcCCCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHH
Q 001619          172 LRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRF  251 (1043)
Q Consensus       172 L~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~  251 (1043)
                      |..|..+++..|..|+.|...++..++.      +.+                         .+.+..            
T Consensus       164 l~tPm~nlEkLW~DY~~fE~~IN~~tar------K~i-------------------------~e~s~~------------  200 (656)
T KOG1914|consen  164 LVTPMHNLEKLWKDYEAFEQEINIITAR------KFI-------------------------GERSPE------------  200 (656)
T ss_pred             hcCccccHHHHHHHHHHHHHHHHHHHHH------HHH-------------------------HhhCHH------------
Confidence            9999999999999999999886532220      000                         011222            


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC----CChHHHHHHHHHHHHHHHcC------C--hHHHHHHHHHHhccC
Q 001619          252 IGEQIYKEASQLDEKINCFENLIRRPYFHVKP----LDDIQLKNWHDYLSFAEKQG------D--FDWVVKLYERCLIPC  319 (1043)
Q Consensus       252 ~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~----~~p~~~~~W~~yi~~e~~~g------~--~e~~~~lyerAl~~~  319 (1043)
                           |..|..++..+...-++++|....+.+    ..-..+++|+++|+||+.++      +  ..|+..+|+.|+...
T Consensus       201 -----Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l  275 (656)
T KOG1914|consen  201 -----YMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYL  275 (656)
T ss_pred             -----HHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHH
Confidence                 334444444555555666654333222    12357899999999998764      1  348999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCC---HHHHHHHHH
Q 001619          320 ADYPEFWMRYVDFMESKGG--------------REIASYALDRATQIFLKRLPVIHLFNARYKEQIGD---TSAARAAFP  382 (1043)
Q Consensus       320 ~~~~~LWl~yAk~~e~~g~--------------~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~---~d~Ar~ll~  382 (1043)
                      +.++++|+.|+.|+...++              -++|+++|||++....+.+..++.+++.+++..-+   .+....++.
T Consensus       276 ~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~  355 (656)
T KOG1914|consen  276 GYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYN  355 (656)
T ss_pred             hcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHH
Confidence            9999999999999998887              68999999999998777777899999999987666   778888888


Q ss_pred             hhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHH--------HHHH-----------
Q 001619          383 ESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQF--------SRLT-----------  443 (1043)
Q Consensus       383 ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~--------ar~~-----------  443 (1043)
                      +++....-+..-+|+.|+++-+|...++.||.+|.+|-+......++. ....++.|        |--+           
T Consensus       356 ~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVf-Va~A~mEy~cskD~~~AfrIFeLGLkkf~d~  434 (656)
T KOG1914|consen  356 KLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVF-VAAALMEYYCSKDKETAFRIFELGLKKFGDS  434 (656)
T ss_pred             HHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhh-HHHHHHHHHhcCChhHHHHHHHHHHHhcCCC
Confidence            887643333334799999999999999999999999999754331111 12333333        1001           


Q ss_pred             --H-HHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 001619          444 --Y-TELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHT  520 (1043)
Q Consensus       444 --~-~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~~p~~  520 (1043)
                        | ..|+.|+...++..   .+|.||||++..      .++++..+.+|..|++||-..|++..+.++..|...+||..
T Consensus       435 p~yv~~YldfL~~lNdd~---N~R~LFEr~l~s------~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~  505 (656)
T KOG1914|consen  435 PEYVLKYLDFLSHLNDDN---NARALFERVLTS------VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD  505 (656)
T ss_pred             hHHHHHHHHHHHHhCcch---hHHHHHHHHHhc------cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence              1 56788888877754   499999999984      57778899999999999999999999999999999999953

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=7e-37  Score=333.34  Aligned_cols=435  Identities=16%  Similarity=0.255  Sum_probs=297.5

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH---------------
Q 001619           25 GLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSI---------------   89 (1043)
Q Consensus        25 ~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~---------------   89 (1043)
                      .+|++|.-+-.++.+|++|+++--+.  ..+..+|.|+.||+...|.-..+|.+|+-.|+.+|++               
T Consensus        95 v~ERALdvd~r~itLWlkYae~Emkn--k~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P  172 (677)
T KOG1915|consen   95 VFERALDVDYRNITLWLKYAEFEMKN--KQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEP  172 (677)
T ss_pred             HHHHHHhcccccchHHHHHHHHHHhh--hhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCC
Confidence            57788888888999999998864444  5677788888888888888888888888777776655               


Q ss_pred             ------------------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHH
Q 001619           90 ------------------DKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKY  151 (1043)
Q Consensus        90 ------------------e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~y  151 (1043)
                                        +.||.+|+|.|.++| .+.-|+.|++|+.++ |++..+|.||++|++.++.+.....+..++
T Consensus       173 ~eqaW~sfI~fElRykeieraR~IYerfV~~HP-~v~~wikyarFE~k~-g~~~~aR~VyerAie~~~~d~~~e~lfvaF  250 (677)
T KOG1915|consen  173 DEQAWLSFIKFELRYKEIERARSIYERFVLVHP-KVSNWIKYARFEEKH-GNVALARSVYERAIEFLGDDEEAEILFVAF  250 (677)
T ss_pred             cHHHHHHHHHHHHHhhHHHHHHHHHHHHheecc-cHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence                              455555555555543 455666666666666 566666666666666666655555666666


Q ss_pred             HHHHHHhhhhhhHHHHHHHHhc-CCCccHHHHHHHHHHHHHHHHHhhhhhh--hhhHHHHHHhhhccccccCccchhhhH
Q 001619          152 IEFEISQQRWSSLAQIFVQTLR-FPSKKLHHYYDSFKKLAGAWKEELECES--DSAMEFQSELVLEGEVPAYYKDDETSS  228 (1043)
Q Consensus       152 i~fe~~~~~~e~a~~iy~raL~-~p~~~l~~~~~~y~~~~~~~~e~l~~~~--~~~~~~~~e~i~~~~l~~~~~~~e~~~  228 (1043)
                      ++||+.+..+++++-||.-+|. +|......++..|..|.+.+.+....+.  .+..+.-++..+.    ..-.++|.|.
T Consensus       251 A~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~----~np~nYDsWf  326 (677)
T KOG1915|consen  251 AEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS----KNPYNYDSWF  326 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH----hCCCCchHHH
Confidence            6666666666666666666663 5555555555555555554332111100  0000011111111    0111222232


Q ss_pred             HHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCh-----HHHHHHHHHHHHHH-Hc
Q 001619          229 VIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDD-----IQLKNWHDYLSFAE-KQ  302 (1043)
Q Consensus       229 ~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p-----~~~~~W~~yi~~e~-~~  302 (1043)
                      ..-++.+.                       .++...-+..||++|..    +.+...     --.-+|+.|+-|++ ..
T Consensus       327 dylrL~e~-----------------------~g~~~~Ire~yErAIan----vpp~~ekr~W~RYIYLWinYalyeEle~  379 (677)
T KOG1915|consen  327 DYLRLEES-----------------------VGDKDRIRETYERAIAN----VPPASEKRYWRRYIYLWINYALYEELEA  379 (677)
T ss_pred             HHHHHHHh-----------------------cCCHHHHHHHHHHHHcc----CCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            11111111                       22333446677777742    111111     12347888877765 45


Q ss_pred             CChHHHHHHHHHHhccCCC----cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHH
Q 001619          303 GDFDWVVKLYERCLIPCAD----YPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAAR  378 (1043)
Q Consensus       303 g~~e~~~~lyerAl~~~~~----~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar  378 (1043)
                      .|.++++.+|.+||..-|+    +..+|++||.|+.++.++..||+++.+|+.. +|. +++.-.|.++|...+++|++|
T Consensus       380 ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~-cPK-~KlFk~YIelElqL~efDRcR  457 (677)
T KOG1915|consen  380 EDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK-CPK-DKLFKGYIELELQLREFDRCR  457 (677)
T ss_pred             hhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc-CCc-hhHHHHHHHHHHHHhhHHHHH
Confidence            7899999999999986554    5799999999999999999999999999877 322 258889999999999999999


Q ss_pred             HHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 001619          379 AAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRS  458 (1043)
Q Consensus       379 ~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~  458 (1043)
                      +||++.+. ..|...-.|++|+.||..+|+.|+||.+|+-||+.       |.     +.-..++|..|+.||...|.  
T Consensus       458 kLYEkfle-~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q-------p~-----ldmpellwkaYIdFEi~~~E--  522 (677)
T KOG1915|consen  458 KLYEKFLE-FSPENCYAWSKYAELETSLGDTDRARAIFELAISQ-------PA-----LDMPELLWKAYIDFEIEEGE--  522 (677)
T ss_pred             HHHHHHHh-cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC-------cc-----cccHHHHHHHhhhhhhhcch--
Confidence            99999994 67777889999999999999999999999999994       32     12234567899999998887  


Q ss_pred             hHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHH-----HcC-----------CHHHHHHHHHHHHhhCCCCcc
Q 001619          459 HISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLD-----LCG-----------TIHDIRNAWNQHIKLFPHTVR  522 (1043)
Q Consensus       459 ~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee-----~~G-----------~~~~a~~~~~ra~k~~p~~~~  522 (1043)
                       .+++|+|+++.|...+-.          .+|.-+..|+-     ..|           ++..|+++++||...+..++.
T Consensus       523 -~ekaR~LYerlL~rt~h~----------kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~  591 (677)
T KOG1915|consen  523 -FEKARALYERLLDRTQHV----------KVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTP  591 (677)
T ss_pred             -HHHHHHHHHHHHHhcccc----------hHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCc
Confidence             679999999999865543          25666677764     335           789999999999999876653

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=100.00  E-value=5.8e-32  Score=304.31  Aligned_cols=450  Identities=16%  Similarity=0.174  Sum_probs=324.7

Q ss_pred             ccHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001619           21 FGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAV  100 (1043)
Q Consensus        21 ~~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL  100 (1043)
                      ...-.+.++|+..|.|+.+|..+++ ++    .+.+ +|.+++||++.+|.|.++|..|+++|    .|+.|++++.+|-
T Consensus       364 ~K~RVlRKALe~iP~sv~LWKaAVe-lE----~~~d-arilL~rAveccp~s~dLwlAlarLe----tYenAkkvLNkaR  433 (913)
T KOG0495|consen  364 NKKRVLRKALEHIPRSVRLWKAAVE-LE----EPED-ARILLERAVECCPQSMDLWLALARLE----TYENAKKVLNKAR  433 (913)
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHh-cc----ChHH-HHHHHHHHHHhccchHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence            3456789999999999999999999 45    2444 99999999999999999999999998    5899999999999


Q ss_pred             HhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCC---CC----------------------------------
Q 001619          101 QSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKD---YL----------------------------------  143 (1043)
Q Consensus       101 ~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~---~~----------------------------------  143 (1043)
                      +.+|.+..||+.-++++..+ |+++.+.++.+|++..+-..   ..                                  
T Consensus       434 e~iptd~~IWitaa~LEE~n-gn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEe  512 (913)
T KOG0495|consen  434 EIIPTDREIWITAAKLEEAN-GNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEE  512 (913)
T ss_pred             hhCCCChhHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhcccc
Confidence            99999999999999999888 88888888888888655222   10                                  


Q ss_pred             --cHHHHHHHHHHHHHhhhhhhHHHHHHHHhcC-CCc-cHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhcccccc
Q 001619          144 --CHTMWDKYIEFEISQQRWSSLAQIFVQTLRF-PSK-KLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPA  219 (1043)
Q Consensus       144 --s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~-p~~-~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~  219 (1043)
                        -..-|..-+++.++.+.++.+|.||..+|.. |.. .+|.....|++..+..++...        .+.+++.     .
T Consensus       513 ed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~A--------llqkav~-----~  579 (913)
T KOG0495|consen  513 EDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEA--------LLQKAVE-----Q  579 (913)
T ss_pred             chhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHH--------HHHHHHH-----h
Confidence              0124444444445555677788888888764 333 456555555555444332111        0000000     0


Q ss_pred             CccchhhhHHH--HhhcCCchhhHHHHHHHHHH----HHHHHHHHHH-------HHHHHHHHHHHHHhcccCCCCCCCCh
Q 001619          220 YYKDDETSSVI--KDLLDPSVDLVRSKAIQKYR----FIGEQIYKEA-------SQLDEKINCFENLIRRPYFHVKPLDD  286 (1043)
Q Consensus       220 ~~~~~e~~~~i--~~~~~~~~~~e~ar~i~~~~----~~~~~~y~~a-------~~~~~~~~~fE~~i~r~~~~~~~~~p  286 (1043)
                      .-..+.+|...  ..|.  .|+...||.|....    .-.+.+|-.+       .+....|..|-++-.         ..
T Consensus       580 ~pkae~lwlM~ake~w~--agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~---------~s  648 (913)
T KOG0495|consen  580 CPKAEILWLMYAKEKWK--AGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS---------IS  648 (913)
T ss_pred             CCcchhHHHHHHHHHHh--cCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc---------cC
Confidence            00111112111  1111  13333344332210    0001111111       111122222222211         12


Q ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHH
Q 001619          287 IQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNAR  366 (1043)
Q Consensus       287 ~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~  366 (1043)
                      ....+|.+++.|+.-.++.++++.++|+||+.+|+++.||++....++..++++.||..|..+++. +|.++-+|+..++
T Consensus       649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLak  727 (913)
T KOG0495|consen  649 GTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAK  727 (913)
T ss_pred             CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHH
Confidence            235699999999999999999999999999999999999999999999999999999999999988 7788789999999


Q ss_pred             HHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHH--
Q 001619          367 YKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTY--  444 (1043)
Q Consensus       367 ~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~--  444 (1043)
                      +|++.|++-+||.+|++++. ..|+...+|+..+.+|.+.|+.+.|+.+..+||..      .|....||..-..++-  
T Consensus       728 leEk~~~~~rAR~ildrarl-kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe------cp~sg~LWaEaI~le~~~  800 (913)
T KOG0495|consen  728 LEEKDGQLVRARSILDRARL-KNPKNALLWLESIRMELRAGNKEQAELLMAKALQE------CPSSGLLWAEAIWLEPRP  800 (913)
T ss_pred             HHHHhcchhhHHHHHHHHHh-cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCccchhHHHHHHhccCc
Confidence            99999999999999999985 46778899999999999999999999999999997      7777888865311100  


Q ss_pred             ---HHHHHHHHHhC--------------CCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHH
Q 001619          445 ---TELIKFTMVHG--------------GRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIR  507 (1043)
Q Consensus       445 ---~~~~~fe~~~g--------------~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~  507 (1043)
                         ...+.-+++-.              ..+.++++|+.|+||+..+|+.         .++|-.+..|+..+|+-+.-.
T Consensus       801 ~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~---------GD~wa~fykfel~hG~eed~k  871 (913)
T KOG0495|consen  801 QRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDN---------GDAWAWFYKFELRHGTEEDQK  871 (913)
T ss_pred             ccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc---------chHHHHHHHHHHHhCCHHHHH
Confidence               11111111100              0123789999999999999997         467999999999999999999


Q ss_pred             HHHHHHHhhCCCCcc
Q 001619          508 NAWNQHIKLFPHTVR  522 (1043)
Q Consensus       508 ~~~~ra~k~~p~~~~  522 (1043)
                      .+|.++..+=|.-|.
T Consensus       872 ev~~~c~~~EP~hG~  886 (913)
T KOG0495|consen  872 EVLKKCETAEPTHGE  886 (913)
T ss_pred             HHHHHHhccCCCCCc
Confidence            999999999887665

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=100.00  E-value=3.2e-29  Score=282.35  Aligned_cols=475  Identities=15%  Similarity=0.230  Sum_probs=333.7

Q ss_pred             cHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCC--CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001619           22 GKQGLEEFIAEGSLDFDEWTSLLSEIEN----SCP--DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEV   95 (1043)
Q Consensus        22 ~~~~le~~i~~nP~d~~~W~~~i~~le~----~~~--~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~l   95 (1043)
                      -...||++++..|.|++.|..|++.-..    .++  .-+...+..|||+|...-..+.+|+.|+.+..+.+++.+.|.+
T Consensus        45 ~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~t  124 (835)
T KOG2047|consen   45 RNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRT  124 (835)
T ss_pred             HHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHH
Confidence            3457999999999999999999964322    233  3457788999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCC--CHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCC------------------------------
Q 001619           96 FERAVQSATY--SVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYL------------------------------  143 (1043)
Q Consensus        96 feRAL~~~P~--s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~------------------------------  143 (1043)
                      |.|||...|-  +-+||-.|++|+..+ +-++.+.++|+|-|+..|.+-.                              
T Consensus       125 fdrALraLpvtqH~rIW~lyl~Fv~~~-~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~s  203 (835)
T KOG2047|consen  125 FDRALRALPVTQHDRIWDLYLKFVESH-GLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVS  203 (835)
T ss_pred             HHHHHHhCchHhhccchHHHHHHHHhC-CChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhh
Confidence            9999999885  679999999999988 7777888888888865544310                              


Q ss_pred             -----c--------------------------------------HHHHHHHHHHHHHhhhhhhHHHHHHHHhcC--CCcc
Q 001619          144 -----C--------------------------------------HTMWDKYIEFEISQQRWSSLAQIFVQTLRF--PSKK  178 (1043)
Q Consensus       144 -----s--------------------------------------~~IW~~yi~fe~~~~~~e~a~~iy~raL~~--p~~~  178 (1043)
                           +                                      +.||...+++..+.|.+++|+.+|++++..  --.+
T Consensus       204 k~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrD  283 (835)
T KOG2047|consen  204 KKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRD  283 (835)
T ss_pred             hcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhh
Confidence                 1                                      246666666666678899999999999853  2235


Q ss_pred             HHHHHHHHHHHHHHHHHh---hhhhhhh------------------------------------hHH-------------
Q 001619          179 LHHYYDSFKKLAGAWKEE---LECESDS------------------------------------AME-------------  206 (1043)
Q Consensus       179 l~~~~~~y~~~~~~~~e~---l~~~~~~------------------------------------~~~-------------  206 (1043)
                      ....|+.|..|....-..   ++.+...                                    .+.             
T Consensus       284 Ft~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~  363 (835)
T KOG2047|consen  284 FTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNA  363 (835)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCCh
Confidence            566666666555431100   0000000                                    000             


Q ss_pred             -----HHHHhhhccccccCc-cchhhhHHHHhhcCCchhhHHHHHHHHHH------HHH--HHHHHHHHHHHHHHHHHHH
Q 001619          207 -----FQSELVLEGEVPAYY-KDDETSSVIKDLLDPSVDLVRSKAIQKYR------FIG--EQIYKEASQLDEKINCFEN  272 (1043)
Q Consensus       207 -----~~~e~i~~~~l~~~~-~~~e~~~~i~~~~~~~~~~e~ar~i~~~~------~~~--~~~y~~a~~~~~~~~~fE~  272 (1043)
                           ...+++..-.-.... .-..+|+.+++++++.+.++.||.|.+-.      ++.  ..+|-.-.+...+-..|+.
T Consensus       364 ~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~  443 (835)
T KOG2047|consen  364 AEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEA  443 (835)
T ss_pred             HHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHH
Confidence                 000111100000000 01235666777777777888888776521      111  1111111111112223333


Q ss_pred             Hhc---c----------cCCCCCC--CC--hHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHH
Q 001619          273 LIR---R----------PYFHVKP--LD--DIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMES  335 (1043)
Q Consensus       273 ~i~---r----------~~~~~~~--~~--p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~  335 (1043)
                      +++   +          -++.+..  +.  -.+..+|..|+++++..|.++..+.+|+|.+..---.+.+-++||.|++.
T Consensus       444 Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEe  523 (835)
T KOG2047|consen  444 ALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEE  523 (835)
T ss_pred             HHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence            321   1          1111111  00  04668999999999999999999999999998766678999999999999


Q ss_pred             cCChHHHHHHHHHHHHHHh-cccchHHHHH-HHHHHHhC--CHHHHHHHHHhhhhCCChhhHH-HHHHHHHHHHHcCCHH
Q 001619          336 KGGREIASYALDRATQIFL-KRLPVIHLFN-ARYKEQIG--DTSAARAAFPESYIDSDSRFIE-KVTFKANMERRLGNFV  410 (1043)
Q Consensus       336 ~g~~e~Ar~ilerA~~~~~-~~~p~iwl~~-A~~E~~~g--~~d~Ar~ll~ral~~~~~~~~~-lw~~~a~lE~~~G~~e  410 (1043)
                      +.-+++|-++|+|++.+|. |..-+||..| .+|-.+.|  .+++||.+|++|++.++|...+ +|+.|+.||++.|-..
T Consensus       524 h~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar  603 (835)
T KOG2047|consen  524 HKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLAR  603 (835)
T ss_pred             hHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHH
Confidence            9999999999999998864 3455799887 45666766  5899999999999988887776 8999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccCCccHHHHHHH---HH---------HHH----------------HHHHHHHHHhCCCchHHH
Q 001619          411 AACDTYKEALETAAEQRKFHTLPLLYVQF---SR---------LTY----------------TELIKFTMVHGGRSHISI  462 (1043)
Q Consensus       411 ~Ar~lyekale~~~~~~~~p~~~~l~~~~---ar---------~~~----------------~~~~~fe~~~g~~~~ler  462 (1043)
                      .|.++|++|........    -..+|..|   |.         .+|                +.++.||.+.|.   ++|
T Consensus       604 ~amsiyerat~~v~~a~----~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGE---idR  676 (835)
T KOG2047|consen  604 HAMSIYERATSAVKEAQ----RLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGE---IDR  676 (835)
T ss_pred             HHHHHHHHHHhcCCHHH----HHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhh---HHH
Confidence            99999999887532110    12233333   32         233                678889999998   789


Q ss_pred             HHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001619          463 VDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWN  511 (1043)
Q Consensus       463 aR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~  511 (1043)
                      ||.|+.-+-..|++.       --.++|..|-+||-.|||-+++++++.
T Consensus       677 ARaIya~~sq~~dPr-------~~~~fW~twk~FEvrHGnedT~keMLR  718 (835)
T KOG2047|consen  677 ARAIYAHGSQICDPR-------VTTEFWDTWKEFEVRHGNEDTYKEMLR  718 (835)
T ss_pred             HHHHHHhhhhcCCCc-------CChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            999999988877664       234689999999999999999888874

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=99.97  E-value=7.3e-29  Score=269.40  Aligned_cols=435  Identities=13%  Similarity=0.235  Sum_probs=328.8

Q ss_pred             cHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001619           22 GKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQ  101 (1043)
Q Consensus        22 ~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~  101 (1043)
                      +...|.+.|+.||.|+-.|..+|..++..  +..++.|++||.++.-||.-...|..|+.-|...+++..+..+|.|+|.
T Consensus        27 D~lrLRerIkdNPtnI~S~fqLiq~~~tq--~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~  104 (660)
T COG5107          27 DELRLRERIKDNPTNILSYFQLIQYLETQ--ESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLK  104 (660)
T ss_pred             hHHHHHHHhhcCchhHHHHHHHHHHHhhh--hhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHh
Confidence            55699999999999999999999999987  8999999999999999999999999999988888899999999999999


Q ss_pred             hcCCCHHHHHHHHHHHHhhCCCh-----HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH---------hhhhhhHHHH
Q 001619          102 SATYSVDVWFHYCSLSMSTFEDP-----NDVRRLFKRALSFVGKDYLCHTMWDKYIEFEIS---------QQRWSSLAQI  167 (1043)
Q Consensus       102 ~~P~s~~LWl~Y~~~~~~~~~~~-----e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~---------~~~~e~a~~i  167 (1043)
                      . ..+++||..|+.+..+....+     -.+-++|+-.+.+.+.+..+..+|..|+.|.+.         ...++.+|++
T Consensus       105 k-~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~  183 (660)
T COG5107         105 K-SLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNG  183 (660)
T ss_pred             h-hccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence            8 668999999999998763222     235677888888888888899999999999874         3568899999


Q ss_pred             HHHHhcCCCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHH
Q 001619          168 FVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQ  247 (1043)
Q Consensus       168 y~raL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~  247 (1043)
                      |.|+|..|..+++..|..|..|...++...+      .+.+.                         +.+..+..||+.|
T Consensus       184 Y~ral~tP~~nleklW~dy~~fE~e~N~~Ta------rKfvg-------------------------e~sp~ym~ar~~y  232 (660)
T COG5107         184 YMRALQTPMGNLEKLWKDYENFELELNKITA------RKFVG-------------------------ETSPIYMSARQRY  232 (660)
T ss_pred             HHHHHcCccccHHHHHHHHHHHHHHHHHHHH------HHHhc-------------------------ccCHHHHHHHHHH
Confidence            9999999999999999999999887653221      11111                         0111223344433


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC----CCCChHHHHHHHHHHHHHHHcC-----C--hHHHHHHHHHHh
Q 001619          248 KYRFIGEQIYKEASQLDEKINCFENLIRRPYFHV----KPLDDIQLKNWHDYLSFAEKQG-----D--FDWVVKLYERCL  316 (1043)
Q Consensus       248 ~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~----~~~~p~~~~~W~~yi~~e~~~g-----~--~e~~~~lyerAl  316 (1043)
                      ..                 +..+-+++++.-+-.    ..........|..+|+|+..+|     +  ..|+..+|+.++
T Consensus       233 qe-----------------~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~  295 (660)
T COG5107         233 QE-----------------IQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQIL  295 (660)
T ss_pred             HH-----------------HHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHH
Confidence            32                 222222221100000    0011134456999999998764     2  348889999999


Q ss_pred             ccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCC--------
Q 001619          317 IPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDS--------  388 (1043)
Q Consensus       317 ~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~--------  388 (1043)
                      ...+..+++|+.|..|+...+|...|....+||..    .+|.+.+.++++++-.++-+..+..|++++...        
T Consensus       296 ~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~----~spsL~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~  371 (660)
T COG5107         296 DYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIE----MSPSLTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGE  371 (660)
T ss_pred             HHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhccc----CCCchheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhh
Confidence            99999999999999999999999999998888864    588899999999998888888888777765310        


Q ss_pred             ---------C------------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHH--------
Q 001619          389 ---------D------------SRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQF--------  439 (1043)
Q Consensus       389 ---------~------------~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~--------  439 (1043)
                               .            .++.-+|+-+++..++...++.||++|-++-+..+.+..+. ....++.|        
T Consensus       372 s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vy-i~~A~~E~~~~~d~~t  450 (660)
T COG5107         372 SESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVY-IYCAFIEYYATGDRAT  450 (660)
T ss_pred             hhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCccee-eeHHHHHHHhcCCcch
Confidence                     0            12233677788888999999999999999988643221111 12334443        


Q ss_pred             HHHHH--------------HHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHH
Q 001619          440 SRLTY--------------TELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHD  505 (1043)
Q Consensus       440 ar~~~--------------~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~  505 (1043)
                      |.-++              ..|..|+...++.   +.||+|||.++...-+       ...+.+|.-|++||-.+|++..
T Consensus       451 a~~ifelGl~~f~d~~~y~~kyl~fLi~inde---~naraLFetsv~r~~~-------~q~k~iy~kmi~YEs~~G~lN~  520 (660)
T COG5107         451 AYNIFELGLLKFPDSTLYKEKYLLFLIRINDE---ENARALFETSVERLEK-------TQLKRIYDKMIEYESMVGSLNN  520 (660)
T ss_pred             HHHHHHHHHHhCCCchHHHHHHHHHHHHhCcH---HHHHHHHHHhHHHHHH-------hhhhHHHHHHHHHHHhhcchHH
Confidence            11111              4566677776664   3699999998874332       3457899999999999999999


Q ss_pred             HHHHHHHHHhhCCCCcc
Q 001619          506 IRNAWNQHIKLFPHTVR  522 (1043)
Q Consensus       506 a~~~~~ra~k~~p~~~~  522 (1043)
                      +..+.+|....+|....
T Consensus       521 v~sLe~rf~e~~pQen~  537 (660)
T COG5107         521 VYSLEERFRELVPQENL  537 (660)
T ss_pred             HHhHHHHHHHHcCcHhH
Confidence            99999999999998655

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=99.93  E-value=4.7e-23  Score=239.94  Aligned_cols=431  Identities=19%  Similarity=0.229  Sum_probs=294.8

Q ss_pred             ccccccCCCCCCCCC---ccHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001619            6 SNLESLSAEPNSPVG---FGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADH   82 (1043)
Q Consensus         6 ~~~~~~~~~~~~~~~---~~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~   82 (1043)
                      |++++.+.++++..+   -++..|+..+..|++++...+.||..+.+.  +++++++...+.+.+.+|++.-+|+.|+..
T Consensus        79 Se~~~ds~sD~s~~~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~--~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d  156 (881)
T KOG0128|consen   79 SEVSMDSDSDSSNEGGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKL--GDLEKLRQARLEMSEIAPLPPHLWLEWLKD  156 (881)
T ss_pred             CcccccccCCccccccchhHHHHHHHHhcccccchHHHHHHHHHHHHh--cchHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence            556666666666554   378899999999999999999999999988  999999999999999999999999999998


Q ss_pred             HHHc---CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhC------CChHHHHHHHHHHHHhcCCCCC-cHHHHHHHH
Q 001619           83 KARL---CSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTF------EDPNDVRRLFKRALSFVGKDYL-CHTMWDKYI  152 (1043)
Q Consensus        83 e~~~---~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~------~~~e~ar~lferAL~~lp~~~~-s~~IW~~yi  152 (1043)
                      +...   ++...+..+|++||.. ..++.||..|+.|+....      ++++..|.+|+|||+.+|.+.. ...||..|+
T Consensus       157 ~~~mt~s~~~~~v~~~~ekal~d-y~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~  235 (881)
T KOG0128|consen  157 ELSMTQSEERKEVEELFEKALGD-YNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYR  235 (881)
T ss_pred             HHhhccCcchhHHHHHHHHHhcc-cccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHH
Confidence            8654   5778999999999998 889999999999987653      4578899999999999998864 458999999


Q ss_pred             HHHHHhh---hhhhHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHH
Q 001619          153 EFEISQQ---RWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSV  229 (1043)
Q Consensus       153 ~fe~~~~---~~e~a~~iy~raL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~  229 (1043)
                      +|+..+-   ..+.+..+|.+.|+.| .++......|.++.+..-                  .         +.+    
T Consensus       236 E~e~~~l~n~~~~qv~a~~~~el~~~-~D~~~~~~~~~~~sk~h~------------------~---------~~~----  283 (881)
T KOG0128|consen  236 EFEVTYLCNVEQRQVIALFVRELKQP-LDEDTRGWDLSEQSKAHV------------------Y---------DVE----  283 (881)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhcc-chhhhhHHHHHHHHhcch------------------H---------HHH----
Confidence            9998642   2356888899999988 333333333433332100                  0         000    


Q ss_pred             HHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHH
Q 001619          230 IKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVV  309 (1043)
Q Consensus       230 i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~  309 (1043)
                                             ....+.....+...+..||+.+.        ..+.....|+.|++|+.+.|++-++.
T Consensus       284 -----------------------~~~~~~a~~~l~~~~~~~e~~~q--------~~~~~~q~~~~yidfe~~~G~p~ri~  332 (881)
T KOG0128|consen  284 -----------------------TKKLDDALKNLAKILFKFERLVQ--------KEPIKDQEWMSYIDFEKKSGDPVRIQ  332 (881)
T ss_pred             -----------------------hccHHHHHHHHHHHHHHHHHHhh--------hhHHHHHHHHHHHHHHHhcCCchHHH
Confidence                                   00001111122233445666654        45778899999999999999999999


Q ss_pred             HHHHHHhccCCCcHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHH-HHHHHHHhhhhC
Q 001619          310 KLYERCLIPCADYPEFWMRYVDFMESKGG-REIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTS-AARAAFPESYID  387 (1043)
Q Consensus       310 ~lyerAl~~~~~~~~LWl~yAk~~e~~g~-~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d-~Ar~ll~ral~~  387 (1043)
                      .+|+|++.-.+....+|+.|.-|+...-+ ...+..++-||++. ++..-.+|-.+-.-.+|++... .-...|.+++..
T Consensus       333 l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~-cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~  411 (881)
T KOG0128|consen  333 LIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRS-CPWTGDLWKRALLALERNREEITVIVQNLEKDLSM  411 (881)
T ss_pred             HHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcC-CchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHH
Confidence            99999998777779999999998765433 33445666677654 2222245555442223333222 223344444432


Q ss_pred             CChhhHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHHHHhhccCCc-----cHHHHHHH----------HHHH---
Q 001619          388 SDSRFIEKVTFKANMERRLG------NFVAACDTYKEALETAAEQRKFHT-----LPLLYVQF----------SRLT---  443 (1043)
Q Consensus       388 ~~~~~~~lw~~~a~lE~~~G------~~e~Ar~lyekale~~~~~~~~p~-----~~~l~~~~----------ar~~---  443 (1043)
                          .+.++..|..+-++.+      .++.-|+.|..|.+.+........     .-++|..+          +|.+   
T Consensus       412 ----~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~  487 (881)
T KOG0128|consen  412 ----TVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNF  487 (881)
T ss_pred             ----HHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhc
Confidence                1223334433334333      245556666666666543322211     12233322          2222   


Q ss_pred             ------------HHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001619          444 ------------YTELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWN  511 (1043)
Q Consensus       444 ------------~~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~  511 (1043)
                                  |+.++++|..+|+..   -+|.++.+|+...-+      +++...+++.|..||+.+|+++.+.....
T Consensus       488 imty~~~~iag~Wle~~~lE~~~g~~~---~~R~~~R~ay~~~~~------~~~~~ev~~~~~r~Ere~gtl~~~~~~~~  558 (881)
T KOG0128|consen  488 IMTYGGGSIAGKWLEAINLEREYGDGP---SARKVLRKAYSQVVD------PEDALEVLEFFRRFEREYGTLESFDLCPE  558 (881)
T ss_pred             cccCCcchHHHHHHHHHhHHHHhCCch---hHHHHHHHHHhcCcC------chhHHHHHHHHHHHHhccccHHHHhhhHH
Confidence                        366778888888854   599999999875433      36678899999999999999988776665


Q ss_pred             HHHhh
Q 001619          512 QHIKL  516 (1043)
Q Consensus       512 ra~k~  516 (1043)
                      +-+..
T Consensus       559 ~~~pr  563 (881)
T KOG0128|consen  559 KVLPR  563 (881)
T ss_pred             hhcch
Confidence            54443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=99.88  E-value=3.2e-21  Score=232.82  Aligned_cols=204  Identities=15%  Similarity=0.229  Sum_probs=181.3

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHH
Q 001619          289 LKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYK  368 (1043)
Q Consensus       289 ~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E  368 (1043)
                      ..+|.+|+++|...|+-+.+..+||||...|. ...++..++.+|++.+.+++|.++|++.++.|- ....+|+.|+.|.
T Consensus      1497 LNiWiA~lNlEn~yG~eesl~kVFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fL 1574 (1710)
T KOG1070|consen 1497 LNIWIAYLNLENAYGTEESLKKVFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFL 1574 (1710)
T ss_pred             HHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHH
Confidence            45899999999889998999999999998764 458899999999999999999999999998855 6667999999999


Q ss_pred             HHhCCHHHHHHHHHhhhhCCChh--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHH
Q 001619          369 EQIGDTSAARAAFPESYIDSDSR--FIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTE  446 (1043)
Q Consensus       369 ~~~g~~d~Ar~ll~ral~~~~~~--~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~  446 (1043)
                      .++++-++||.++.||++ +.|+  ..++..++|.||.+.|+.+++|.+|+..+..      +|.-..+|        ..
T Consensus      1575 l~~ne~~aa~~lL~rAL~-~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a------yPKRtDlW--------~V 1639 (1710)
T KOG1070|consen 1575 LRQNEAEAARELLKRALK-SLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA------YPKRTDLW--------SV 1639 (1710)
T ss_pred             hcccHHHHHHHHHHHHHh-hcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh------CccchhHH--------HH
Confidence            999999999999999996 4554  7889999999999999999999999999987      77666666        66


Q ss_pred             HHHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001619          447 LIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFP  518 (1043)
Q Consensus       447 ~~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~~p  518 (1043)
                      |++.|.++|+.   +.+|+||+|++..      .|++..++.++..||+||..+|+.+.+..+=+||++.+.
T Consensus      1640 Yid~eik~~~~---~~vR~lfeRvi~l------~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~EYv~ 1702 (1710)
T KOG1070|consen 1640 YIDMEIKHGDI---KYVRDLFERVIEL------KLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKEYVE 1702 (1710)
T ss_pred             HHHHHHccCCH---HHHHHHHHHHHhc------CCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHH
Confidence            68899999984   4799999999984      678899999999999999999999999999999998874

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.85  E-value=9e-17  Score=205.76  Aligned_cols=342  Identities=10%  Similarity=0.011  Sum_probs=168.9

Q ss_pred             CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHH
Q 001619           53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFK  132 (1043)
Q Consensus        53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lfe  132 (1043)
                      ++.+++..++++++..+|.+...|..++......|++++|..+|++++...|.+...|..++...... +++++|.++|+
T Consensus       445 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~  523 (899)
T TIGR02917       445 GQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQE-GNPDDAIQRFE  523 (899)
T ss_pred             CCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHC-CCHHHHHHHHH
Confidence            44444444555555555555555555555555555555555555555555555555555555554444 55555555555


Q ss_pred             HHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCccHHHHHH--HHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001619          133 RALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYD--SFKKLAGAWKEELECESDSAMEFQSE  210 (1043)
Q Consensus       133 rAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~l~~~~~--~y~~~~~~~~e~l~~~~~~~~~~~~e  210 (1043)
                      +++...|.   +..+|..++.+....|+.+.+..+|.+++...+......+.  .+....+.+.+++        ..+..
T Consensus       524 ~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~--------~~~~~  592 (899)
T TIGR02917       524 KVLTIDPK---NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKAL--------AILNE  592 (899)
T ss_pred             HHHHhCcC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHH--------HHHHH
Confidence            55554443   23455555555555555555555555554432222111111  0000001111110        00100


Q ss_pred             hhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 001619          211 LVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRF-----------IGEQIYKEASQLDEKINCFENLIRRPYF  279 (1043)
Q Consensus       211 ~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~-----------~~~~~y~~a~~~~~~~~~fE~~i~r~~~  279 (1043)
                      . .+.    ...+.+.+..+.......+.++.|...+....           .....|....+...+...|++++.    
T Consensus       593 ~-~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----  663 (899)
T TIGR02917       593 A-ADA----APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALE----  663 (899)
T ss_pred             H-HHc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh----
Confidence            0 000    00111122222222222233333333222100           000111111222233334444432    


Q ss_pred             CCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccch
Q 001619          280 HVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPV  359 (1043)
Q Consensus       280 ~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~  359 (1043)
                          .+|.+...|..++.++...|+++.+..+++++....+....+|...+..+...|++++|...|.+++.. .++. .
T Consensus       664 ----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~-~  737 (899)
T TIGR02917       664 ----LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR-APSS-Q  737 (899)
T ss_pred             ----cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCc-h
Confidence                345556666666666666666666666666666666666666666666666667777777777776665 2222 4


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619          360 IHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET  422 (1043)
Q Consensus       360 iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~  422 (1043)
                      ++...+.+....|++++|...+.+++.. .++...++...+.+....|+++.|..+|+++++.
T Consensus       738 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  799 (899)
T TIGR02917       738 NAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK  799 (899)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence            5566666666777777777777776643 3444566666677777777777777777777775

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=99.84  E-value=1.8e-17  Score=185.52  Aligned_cols=397  Identities=15%  Similarity=0.190  Sum_probs=224.6

Q ss_pred             CCCccHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCH----HHH
Q 001619           18 PVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARL-CSI----DKV   92 (1043)
Q Consensus        18 ~~~~~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~-~~~----e~a   92 (1043)
                      +.+..-+.||+.+..+|++...|..||+..-..  .+++.+.++|-|+|..- ++.+||+.|+..-.+. +..    +..
T Consensus        34 ~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~s--kdfe~VEkLF~RCLvkv-LnlDLW~lYl~YVR~~~~~~~~~r~~m  110 (656)
T KOG1914|consen   34 PIDKVRETYEQLVNVFPSSPRAWKLYIERELAS--KDFESVEKLFSRCLVKV-LNLDLWKLYLSYVRETKGKLFGYREKM  110 (656)
T ss_pred             CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHH-hhHhHHHHHHHHHHHHccCcchHHHHH
Confidence            667777899999999999999999999965555  79999999999999887 6799999999976544 332    344


Q ss_pred             HHHHHHHHHhc---CCCHHHHHHHHHHHHhhC--------CChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhh--
Q 001619           93 VEVFERAVQSA---TYSVDVWFHYCSLSMSTF--------EDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQ--  159 (1043)
Q Consensus        93 ~~lfeRAL~~~---P~s~~LWl~Y~~~~~~~~--------~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~--  159 (1043)
                      ...|+=|+..+   +.|..||..|+.|+....        ..++.+|++|.|||. .|++- -..||..|..||....  
T Consensus       111 ~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~-tPm~n-lEkLW~DY~~fE~~IN~~  188 (656)
T KOG1914|consen  111 VQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV-TPMHN-LEKLWKDYEAFEQEINII  188 (656)
T ss_pred             HHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc-Ccccc-HHHHHHHHHHHHHHHHHH
Confidence            55566666654   678899999999986431        247889999999986 56653 3689999999998653  


Q ss_pred             -----------hhhhHHHHHHHHhc-----------CCCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhcccc
Q 001619          160 -----------RWSSLAQIFVQTLR-----------FPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEV  217 (1043)
Q Consensus       160 -----------~~e~a~~iy~raL~-----------~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l  217 (1043)
                                 .+-.||++|+....           +|..........+                               
T Consensus       189 tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv-------------------------------  237 (656)
T KOG1914|consen  189 TARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQV-------------------------------  237 (656)
T ss_pred             HHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHH-------------------------------
Confidence                       23345555443311           1211111001111                               


Q ss_pred             ccCccchhhhHHHHhhcCCch------hhHHHH--HHHHHH----HHHHHHH-H------HHHHHH--------HHHHHH
Q 001619          218 PAYYKDDETSSVIKDLLDPSV------DLVRSK--AIQKYR----FIGEQIY-K------EASQLD--------EKINCF  270 (1043)
Q Consensus       218 ~~~~~~~e~~~~i~~~~~~~~------~~e~ar--~i~~~~----~~~~~~y-~------~a~~~~--------~~~~~f  270 (1043)
                             ++|..+-+|....+      ..-.-|  .+++..    .....+| +      ...+++        .+...+
T Consensus       238 -------~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~  310 (656)
T KOG1914|consen  238 -------ELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTD  310 (656)
T ss_pred             -------HHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHH
Confidence                   11111111111000      000001  111100    0000000 0      000000        000011


Q ss_pred             HHHhcccCCCCC-CCChHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHHcCChHHHHHH
Q 001619          271 ENLIRRPYFHVK-PLDDIQLKNWHDYLSFAEKQGD---FDWVVKLYERCLIP-CADYPEFWMRYVDFMESKGGREIASYA  345 (1043)
Q Consensus       271 E~~i~r~~~~~~-~~~p~~~~~W~~yi~~e~~~g~---~e~~~~lyerAl~~-~~~~~~LWl~yAk~~e~~g~~e~Ar~i  345 (1043)
                      |  ++..|+... .+...+..++..|+++++...+   .+.+...|++++.. ..+..-+|+.|.+|..+...+..||.|
T Consensus       311 e--~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i  388 (656)
T KOG1914|consen  311 E--AASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI  388 (656)
T ss_pred             H--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence            1  111111111 1222344555555665554333   45555566666543 233334466666666666666666666


Q ss_pred             HHHHHHHHhcccchHHHHHHHHHH-HhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 001619          346 LDRATQIFLKRLPVIHLFNARYKE-QIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAA  424 (1043)
Q Consensus       346 lerA~~~~~~~~p~iwl~~A~~E~-~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~  424 (1043)
                      |.+|.+. ....-.|+++.|-+|. -.++.+.|.+||+-+++. .++...+-.+|++|...+|+-+.||.+|++++... 
T Consensus       389 F~kaR~~-~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~-  465 (656)
T KOG1914|consen  389 FKKARED-KRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSV-  465 (656)
T ss_pred             HHHHhhc-cCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc-
Confidence            6666553 1111256666666654 345666666666666643 23345566677777777777777777777777641 


Q ss_pred             hhccCCccHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCC
Q 001619          425 EQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRP  475 (1043)
Q Consensus       425 ~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~~~p  475 (1043)
                          .+      ...+..+|..|+.||.+.|+   ++-+++|-+|-...-|
T Consensus       466 ----l~------~~ks~~Iw~r~l~yES~vGd---L~si~~lekR~~~af~  503 (656)
T KOG1914|consen  466 ----LS------ADKSKEIWDRMLEYESNVGD---LNSILKLEKRRFTAFP  503 (656)
T ss_pred             ----CC------hhhhHHHHHHHHHHHHhccc---HHHHHHHHHHHHHhcc
Confidence                11      12245567889999999998   5567777776555333

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.84  E-value=2e-16  Score=202.48  Aligned_cols=380  Identities=11%  Similarity=-0.008  Sum_probs=205.4

Q ss_pred             ccHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001619           21 FGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAV  100 (1043)
Q Consensus        21 ~~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL  100 (1043)
                      .-...+++.+..+|.+...|..++..+...  ++.+++..+|++++...|.....|..++......|++++|...|++++
T Consensus       347 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  424 (899)
T TIGR02917       347 EAIATLSPALGLDPDDPAALSLLGEAYLAL--GDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAA  424 (899)
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence            345567777888888888888877766665  778888888888888888888888888877777778888888888888


Q ss_pred             HhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCccHH
Q 001619          101 QSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLH  180 (1043)
Q Consensus       101 ~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~l~  180 (1043)
                      ...|.....+..++...... ++.+++..+|++.+...|.   ...+|...+......|+++.|..+|.+++.+.+....
T Consensus       425 ~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~  500 (899)
T TIGR02917       425 QLDPELGRADLLLILSYLRS-GQFDKALAAAKKLEKKQPD---NASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFP  500 (899)
T ss_pred             hhCCcchhhHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCC---CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHH
Confidence            77777666666666555555 6677777777776665554   3456666666666666677777777777654333222


Q ss_pred             HHHHH---------HHHHHHHHHHhhhhhh-------------------hhhHHHHHHhhhccccccCccchhhhHHHHh
Q 001619          181 HYYDS---------FKKLAGAWKEELECES-------------------DSAMEFQSELVLEGEVPAYYKDDETSSVIKD  232 (1043)
Q Consensus       181 ~~~~~---------y~~~~~~~~e~l~~~~-------------------~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~  232 (1043)
                      ..+..         +.+.+..+.+.+....                   ..+...+...+..     ...+.+.+..+..
T Consensus       501 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~  575 (899)
T TIGR02917       501 AAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL-----NPQEIEPALALAQ  575 (899)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CccchhHHHHHHH
Confidence            11110         0010111110000000                   0000000000000     0000111111111


Q ss_pred             hcCCchhhHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHH
Q 001619          233 LLDPSVDLVRSKAIQKYR-----------FIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEK  301 (1043)
Q Consensus       233 ~~~~~~~~e~ar~i~~~~-----------~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~  301 (1043)
                      .....+.++.|..+++..           ......|....+...++..|++.+.        .+|.+...|..++..+..
T Consensus       576 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~  647 (899)
T TIGR02917       576 YYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA--------LQPDSALALLLLADAYAV  647 (899)
T ss_pred             HHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCCChHHHHHHHHHHHH
Confidence            111222222222222110           0000111111222223333444432        234445556666665555


Q ss_pred             cCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHH
Q 001619          302 QGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAF  381 (1043)
Q Consensus       302 ~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll  381 (1043)
                      .|+++.+..+|++++..+|+....|..++..+...|+.+.|..+++++... .+..+.+|...+......|++++|.+.|
T Consensus       648 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~  726 (899)
T TIGR02917       648 MKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ-HPKAALGFELEGDLYLRQKDYPAAIQAY  726 (899)
T ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence            666666666666666666666666666666666666666666666655544 3344555666666666666666666666


Q ss_pred             HhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619          382 PESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET  422 (1043)
Q Consensus       382 ~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~  422 (1043)
                      .+++... ++. ..+...+.+....|++++|...|+++++.
T Consensus       727 ~~~~~~~-~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  765 (899)
T TIGR02917       727 RKALKRA-PSS-QNAIKLHRALLASGNTAEAVKTLEAWLKT  765 (899)
T ss_pred             HHHHhhC-CCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            6666432 222 34555566666667777777777666665

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.83  E-value=3e-18  Score=193.15  Aligned_cols=391  Identities=15%  Similarity=0.166  Sum_probs=279.3

Q ss_pred             cHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001619           22 GKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQ  101 (1043)
Q Consensus        22 ~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~  101 (1043)
                      ....-..+|+.+|.--+++..+.+.++..  +.+..+...|+.+++..|...+.|+..+......|+.+.|..+|..||.
T Consensus       101 s~a~~~~a~r~~~q~ae~ysn~aN~~ker--g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq  178 (966)
T KOG4626|consen  101 SSAGSLLAIRKNPQGAEAYSNLANILKER--GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ  178 (966)
T ss_pred             hhhhhhhhhhccchHHHHHHHHHHHHHHh--chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh
Confidence            44455678999999999999999877766  8999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCccHHH
Q 001619          102 SATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHH  181 (1043)
Q Consensus       102 ~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~l~~  181 (1043)
                      .+|..+..-.....++... |..++|..-|-+|++..|.   -.-.|....-.....|++-.+..-|++++++.+.-+..
T Consensus       179 lnP~l~ca~s~lgnLlka~-Grl~ea~~cYlkAi~~qp~---fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dA  254 (966)
T KOG4626|consen  179 LNPDLYCARSDLGNLLKAE-GRLEEAKACYLKAIETQPC---FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDA  254 (966)
T ss_pred             cCcchhhhhcchhHHHHhh-cccchhHHHHHHHHhhCCc---eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHH
Confidence            9998888777777777666 8889999999999998875   24678888888888899888999999999876543333


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 001619          182 YYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEAS  261 (1043)
Q Consensus       182 ~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~  261 (1043)
                      ++.     ++.                                                               +|+++.
T Consensus       255 YiN-----LGn---------------------------------------------------------------V~ke~~  266 (966)
T KOG4626|consen  255 YIN-----LGN---------------------------------------------------------------VYKEAR  266 (966)
T ss_pred             Hhh-----HHH---------------------------------------------------------------HHHHHh
Confidence            221     010                                                               011112


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHH
Q 001619          262 QLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREI  341 (1043)
Q Consensus       262 ~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~  341 (1043)
                      ....+...|++++.        +.|+....+-..+-.+.+.|.+|-++.+|+|||...|++++.+.+.|.-+...|++.+
T Consensus       267 ~~d~Avs~Y~rAl~--------lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~e  338 (966)
T KOG4626|consen  267 IFDRAVSCYLRALN--------LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTE  338 (966)
T ss_pred             cchHHHHHHHHHHh--------cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHH
Confidence            22233444555543        2355555555555555567788888888888888888888888888888877888888


Q ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001619          342 ASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALE  421 (1043)
Q Consensus       342 Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale  421 (1043)
                      |...|.+|+.. ++..++-.-..+....+.|.++.|..+|.+|+. ..|.+.......+.+....|++++|...|++||.
T Consensus       339 a~~cYnkaL~l-~p~hadam~NLgni~~E~~~~e~A~~ly~~al~-v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr  416 (966)
T KOG4626|consen  339 AVDCYNKALRL-CPNHADAMNNLGNIYREQGKIEEATRLYLKALE-VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR  416 (966)
T ss_pred             HHHHHHHHHHh-CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh-hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh
Confidence            88888888866 555565555566666777888888888888874 4566666677777777778888888888888887


Q ss_pred             HHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcC
Q 001619          422 TAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCG  501 (1043)
Q Consensus       422 ~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G  501 (1043)
                      .      .|.+...|.+...        -.+..|+   +..|-..+++|+..+|.-        .+. ..-..-.-+.-|
T Consensus       417 I------~P~fAda~~NmGn--------t~ke~g~---v~~A~q~y~rAI~~nPt~--------AeA-hsNLasi~kDsG  470 (966)
T KOG4626|consen  417 I------KPTFADALSNMGN--------TYKEMGD---VSAAIQCYTRAIQINPTF--------AEA-HSNLASIYKDSG  470 (966)
T ss_pred             c------CchHHHHHHhcch--------HHHHhhh---HHHHHHHHHHHHhcCcHH--------HHH-HhhHHHHhhccC
Confidence            6      5554543322211        0111222   445777788888877753        111 111222224558


Q ss_pred             CHHHHHHHHHHHHhhCCCCcc
Q 001619          502 TIHDIRNAWNQHIKLFPHTVR  522 (1043)
Q Consensus       502 ~~~~a~~~~~ra~k~~p~~~~  522 (1043)
                      ++..|...|+.|++.-|+...
T Consensus       471 ni~~AI~sY~~aLklkPDfpd  491 (966)
T KOG4626|consen  471 NIPEAIQSYRTALKLKPDFPD  491 (966)
T ss_pred             CcHHHHHHHHHHHccCCCCch
Confidence            888888888888888776543

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=99.82  E-value=1.1e-16  Score=183.39  Aligned_cols=392  Identities=16%  Similarity=0.184  Sum_probs=250.1

Q ss_pred             cHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Q 001619           22 GKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARL-CSIDKVVEVFERAV  100 (1043)
Q Consensus        22 ~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~-~~~e~a~~lfeRAL  100 (1043)
                      --..|...|...|.....|.+++++--+.  +.++++.+||||++..+|.|+.+|..|+.+.... |+.+.++.+|+||+
T Consensus        64 ~r~~y~~fL~kyPl~~gyW~kfA~~E~kl--g~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~  141 (577)
T KOG1258|consen   64 LREVYDIFLSKYPLCYGYWKKFADYEYKL--GNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK  141 (577)
T ss_pred             HHHHHHHHHhhCccHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence            34567788889999999999999976666  8999999999999999999999999999987654 78889999999999


Q ss_pred             HhcC---CCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhh-----hhhhHHHHHHHHh
Q 001619          101 QSAT---YSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQ-----RWSSLAQIFVQTL  172 (1043)
Q Consensus       101 ~~~P---~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~-----~~e~a~~iy~raL  172 (1043)
                      ..+.   .|..||-.|++|+... ++...+-.+|+|-|. +|.+. -...+..|.++.....     ..+.+.++-....
T Consensus       142 ~~vG~dF~S~~lWdkyie~en~q-ks~k~v~~iyeRile-iP~~~-~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~  218 (577)
T KOG1258|consen  142 SYVGLDFLSDPLWDKYIEFENGQ-KSWKRVANIYERILE-IPLHQ-LNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVA  218 (577)
T ss_pred             HhcccchhccHHHHHHHHHHhcc-ccHHHHHHHHHHHHh-hhhhH-hHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHH
Confidence            9875   4789999999999777 888999999999987 46554 2466667776665421     1122111111000


Q ss_pred             ---cCCCcc-HHHHHHHHHHHHHHHHHhhhhhhhhhHHHH---HHhhhccccccCccchhhh----HHHHhhcCCchhhH
Q 001619          173 ---RFPSKK-LHHYYDSFKKLAGAWKEELECESDSAMEFQ---SELVLEGEVPAYYKDDETS----SVIKDLLDPSVDLV  241 (1043)
Q Consensus       173 ---~~p~~~-l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~---~e~i~~~~l~~~~~~~e~~----~~i~~~~~~~~~~e  241 (1043)
                         .++... ....+..+...+..-...+.... +....+   .+.+-.+..    ...+..    ..|++.+-....++
T Consensus       219 ~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~-~~l~~~~~~~~~~~~~s~----~~~~kr~~fE~~IkrpYfhvkpl~  293 (577)
T KOG1258|consen  219 ERSKITHSQEPLEELEIGVKDSTDPSKSLTEEK-TILKRIVSIHEKVYQKSE----EEEEKRWGFEEGIKRPYFHVKPLD  293 (577)
T ss_pred             hhhhcccccChhHHHHHHHhhccCccchhhHHH-HHHHHHHHHHHHHHHhhH----hHHHHHHhhhhhccccccccCccc
Confidence               011110 01111111111111000000000 000000   000000000    000000    00000000001111


Q ss_pred             HHH--HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Q 001619          242 RSK--AIQKY--RFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLI  317 (1043)
Q Consensus       242 ~ar--~i~~~--~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~  317 (1043)
                      .|.  ....|  ..+..+.|++      ....||+.+..-        ..-.+.|.+|+.|....|+.+-+..++.+|.+
T Consensus       294 ~aql~nw~~yLdf~i~~g~~~~------~~~l~ercli~c--------A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~  359 (577)
T KOG1258|consen  294 QAQLKNWRYYLDFEITLGDFSR------VFILFERCLIPC--------ALYDEFWIKYARWMESSGDVSLANNVLARACK  359 (577)
T ss_pred             HHHHHHHHHHhhhhhhcccHHH------HHHHHHHHHhHH--------hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhh
Confidence            110  00000  0111222222      223444444210        12347999999999999999999999999986


Q ss_pred             -cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHH---HHHHhhhhC--CChh
Q 001619          318 -PCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAAR---AAFPESYID--SDSR  391 (1043)
Q Consensus       318 -~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar---~ll~ral~~--~~~~  391 (1043)
                       .+++.+.+-+.+|.|.+..|+++.|+.+|++...-+ ++.-.+-+.++.+|.+.|+.+.+.   .++......  ....
T Consensus       360 i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i  438 (577)
T KOG1258|consen  360 IHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGI  438 (577)
T ss_pred             hcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcch
Confidence             578999999999999999999999999999999886 777788899999999999999998   555444331  1223


Q ss_pred             hHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHH
Q 001619          392 FIEKVTFKANMERRL-GNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTY  444 (1043)
Q Consensus       392 ~~~lw~~~a~lE~~~-G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~  444 (1043)
                      ...++..++.|-... ++.+.|+.++.++++.      +|.+-.+|+.+.++++
T Consensus       439 ~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~------~~~~k~~~~~~~~~~~  486 (577)
T KOG1258|consen  439 LEKLYVKFARLRYKIREDADLARIILLEANDI------LPDCKVLYLELIRFEL  486 (577)
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc------CCccHHHHHHHHHHHH
Confidence            345677777776654 7899999999999997      7777888888877654

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=99.79  E-value=1.2e-17  Score=202.37  Aligned_cols=252  Identities=19%  Similarity=0.235  Sum_probs=195.6

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCc--HHHHHHHHHHHHHhhhhhhHHHHHH
Q 001619           92 VVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLC--HTMWDKYIEFEISQQRWSSLAQIFV  169 (1043)
Q Consensus        92 a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s--~~IW~~yi~fe~~~~~~e~a~~iy~  169 (1043)
                      ..+=|+|.|...|+|.-+|+.|+.|.+.. .++++||++++|||..+.+.-..  -.||.+|+.+|..+|.-+.+.++|+
T Consensus      1443 saeDferlvrssPNSSi~WI~YMaf~Lel-sEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLEL-SEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred             CHHHHHHHHhcCCCcchHHHHHHHHHhhh-hhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence            44568999999999999999999998888 88999999999999998654321  2699999999999998899999999


Q ss_pred             HHhcCCCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHH
Q 001619          170 QTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKY  249 (1043)
Q Consensus       170 raL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~  249 (1043)
                      ||.++..     .+.-|+.+.+-+..                                         ...          
T Consensus      1522 RAcqycd-----~~~V~~~L~~iy~k-----------------------------------------~ek---------- 1545 (1710)
T KOG1070|consen 1522 RACQYCD-----AYTVHLKLLGIYEK-----------------------------------------SEK---------- 1545 (1710)
T ss_pred             HHHHhcc-----hHHHHHHHHHHHHH-----------------------------------------hhc----------
Confidence            9987532     12222222221110                                         000          


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCC--cHHHHH
Q 001619          250 RFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCAD--YPEFWM  327 (1043)
Q Consensus       250 ~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~--~~~LWl  327 (1043)
                             |..|.+++..      .+++        +......|..|++|+.++.+-+.++.++.||+.+.|+  +.++--
T Consensus      1546 -------~~~A~ell~~------m~KK--------F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Is 1604 (1710)
T KOG1070|consen 1546 -------NDEADELLRL------MLKK--------FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFIS 1604 (1710)
T ss_pred             -------chhHHHHHHH------HHHH--------hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHH
Confidence                   1111121111      1111        1235679999999999999999999999999999988  889999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCC-ChhhHH-HHHHHHHHHHH
Q 001619          328 RYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDS-DSRFIE-KVTFKANMERR  405 (1043)
Q Consensus       328 ~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~-~~~~~~-lw~~~a~lE~~  405 (1043)
                      .+|.++-+.||.+.+|.+|+-.+..+ |...++|..|+++|.++|+.+.+|.+|+|++... .++-++ +|.+|+++|..
T Consensus      1605 kfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~ 1683 (1710)
T KOG1070|consen 1605 KFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKS 1683 (1710)
T ss_pred             HHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHh
Confidence            99999999999999999999888774 4455799999999999999999999999999743 233343 78899999999


Q ss_pred             cCCHHHHHHHHHHHHHH
Q 001619          406 LGNFVAACDTYKEALET  422 (1043)
Q Consensus       406 ~G~~e~Ar~lyekale~  422 (1043)
                      .|+-+.+..+=.||++.
T Consensus      1684 ~Gde~~vE~VKarA~EY 1700 (1710)
T KOG1070|consen 1684 HGDEKNVEYVKARAKEY 1700 (1710)
T ss_pred             cCchhhHHHHHHHHHHH
Confidence            99999888888888875

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=99.79  E-value=1.1e-15  Score=170.66  Aligned_cols=96  Identities=15%  Similarity=0.216  Sum_probs=84.6

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 001619           23 KQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLC-SIDKVVEVFERAVQ  101 (1043)
Q Consensus        23 ~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~-~~e~a~~lfeRAL~  101 (1043)
                      ...|.+++.+.+.|++.|..||.++.+.  +...++..||..+|..+|+++++|+..+.||.+-+ +++.||.+|-|||.
T Consensus        91 v~lyr~at~rf~~D~~lW~~yi~f~kk~--~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR  168 (568)
T KOG2396|consen   91 VFLYRRATNRFNGDVKLWLSYIAFCKKK--KTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR  168 (568)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHh--cchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence            3568888899999999999999999887  66888899999999999999999999999987664 58999999999999


Q ss_pred             hcCCCHHHHHHHHHHHHhh
Q 001619          102 SATYSVDVWFHYCSLSMST  120 (1043)
Q Consensus       102 ~~P~s~~LWl~Y~~~~~~~  120 (1043)
                      .+|.+++||.+|.++++..
T Consensus       169 ~npdsp~Lw~eyfrmEL~~  187 (568)
T KOG2396|consen  169 FNPDSPKLWKEYFRMELMY  187 (568)
T ss_pred             cCCCChHHHHHHHHHHHHH
Confidence            9999999999999998765

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.78  E-value=3.4e-15  Score=184.61  Aligned_cols=413  Identities=12%  Similarity=0.061  Sum_probs=270.0

Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCC
Q 001619           43 LLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFE  122 (1043)
Q Consensus        43 ~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~  122 (1043)
                      ....+-+.  ++++++...|++++...|. ..+|...+......|++++|...|++||+..|.+++.|...+...... +
T Consensus       133 ~G~~~~~~--~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l-g  208 (615)
T TIGR00990       133 KGNKAYRN--KDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL-G  208 (615)
T ss_pred             HHHHHHHc--CCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-C
Confidence            33333344  8999999999999999996 678988888888999999999999999999999999999999888887 8


Q ss_pred             ChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCc--cHHHHHHHHHHH-----------
Q 001619          123 DPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSK--KLHHYYDSFKKL-----------  189 (1043)
Q Consensus       123 ~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~--~l~~~~~~y~~~-----------  189 (1043)
                      ++++|..-|..++..-+..  ...+-..+.+....     .+...+..+++....  ..+.....|...           
T Consensus       209 ~~~eA~~~~~~~~~~~~~~--~~~~~~~~~~~l~~-----~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (615)
T TIGR00990       209 KYADALLDLTASCIIDGFR--NEQSAQAVERLLKK-----FAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLE  281 (615)
T ss_pred             CHHHHHHHHHHHHHhCCCc--cHHHHHHHHHHHHH-----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhh
Confidence            9999999887776543332  11111111111110     011111111111000  000000000000           


Q ss_pred             -------------HHHHHHhhhh----hhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHH
Q 001619          190 -------------AGAWKEELEC----ESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFI  252 (1043)
Q Consensus       190 -------------~~~~~e~l~~----~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~  252 (1043)
                                   .......+..    ....+.+.+...+..+.+.                     ...+....    .
T Consensus       282 ~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~---------------------~~~a~a~~----~  336 (615)
T TIGR00990       282 DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLG---------------------EKEAIALN----L  336 (615)
T ss_pred             cccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCC---------------------hhhHHHHH----H
Confidence                         0000000000    0000111111111100000                     00000000    0


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHH
Q 001619          253 GEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDF  332 (1043)
Q Consensus       253 ~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~  332 (1043)
                      ....+....+...++..|+++|.        .+|.....|..++..+...|+++.+...|++|+...|+...+|...+..
T Consensus       337 lg~~~~~~g~~~eA~~~~~kal~--------l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~  408 (615)
T TIGR00990       337 RGTFKCLKGKHLEALADLSKSIE--------LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQL  408 (615)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHH--------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            11112222233445556677764        4678888999999988889999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHH
Q 001619          333 MESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAA  412 (1043)
Q Consensus       333 ~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~A  412 (1043)
                      +...|++++|...|++++.. .|+....|+..+.+..+.|++++|...|.+++.. .|....+|..++.+....|++++|
T Consensus       409 ~~~~g~~~~A~~~~~kal~l-~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A  486 (615)
T TIGR00990       409 HFIKGEFAQAGKDYQKSIDL-DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEA  486 (615)
T ss_pred             HHHcCCHHHHHHHHHHHHHc-CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHH
Confidence            99999999999999999987 6677788999999999999999999999999964 566678899999999999999999


Q ss_pred             HHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHH
Q 001619          413 CDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSL  492 (1043)
Q Consensus       413 r~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~l  492 (1043)
                      ++.|+++++.      .|.....+............-|. ..|   +.+.|..++++|+...|+.         ...+..
T Consensus       487 ~~~~~~Al~l------~p~~~~~~~~~~~l~~~a~~~~~-~~~---~~~eA~~~~~kAl~l~p~~---------~~a~~~  547 (615)
T TIGR00990       487 IEKFDTAIEL------EKETKPMYMNVLPLINKALALFQ-WKQ---DFIEAENLCEKALIIDPEC---------DIAVAT  547 (615)
T ss_pred             HHHHHHHHhc------CCccccccccHHHHHHHHHHHHH-Hhh---hHHHHHHHHHHHHhcCCCc---------HHHHHH
Confidence            9999999997      33222222221111111111111 112   3678999999999988875         223444


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 001619          493 YLQFLDLCGTIHDIRNAWNQHIKLFPHT  520 (1043)
Q Consensus       493 wl~fee~~G~~~~a~~~~~ra~k~~p~~  520 (1043)
                      ........|+.+.|.+.|+++++..+..
T Consensus       548 la~~~~~~g~~~eAi~~~e~A~~l~~~~  575 (615)
T TIGR00990       548 MAQLLLQQGDVDEALKLFERAAELARTE  575 (615)
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence            5555667899999999999999997653

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.78  E-value=6e-17  Score=182.73  Aligned_cols=357  Identities=14%  Similarity=0.183  Sum_probs=284.4

Q ss_pred             CccHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001619           20 GFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERA   99 (1043)
Q Consensus        20 ~~~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRA   99 (1043)
                      .+.+..|+.+|+..|+.+++|+.+...+-..  ++.+.+-..|-.+|..+|..+-.-.....+....|..++|..+|-+|
T Consensus       133 ~~al~~y~~aiel~p~fida~inla~al~~~--~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkA  210 (966)
T KOG4626|consen  133 QDALALYRAAIELKPKFIDAYINLAAALVTQ--GDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKA  210 (966)
T ss_pred             HHHHHHHHHHHhcCchhhHHHhhHHHHHHhc--CCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence            3456789999999999999999998888776  88889999999999999999988888888888889999999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCccH
Q 001619          100 VQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKL  179 (1043)
Q Consensus       100 L~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~l  179 (1043)
                      ++..|.-.-.|..++-..... |++..+..-|++|++.-|. |.  ..++.......+.+.+++|...|.|++..-+...
T Consensus       211 i~~qp~fAiawsnLg~~f~~~-Gei~~aiq~y~eAvkldP~-f~--dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A  286 (966)
T KOG4626|consen  211 IETQPCFAIAWSNLGCVFNAQ-GEIWLAIQHYEEAVKLDPN-FL--DAYINLGNVYKEARIFDRAVSCYLRALNLRPNHA  286 (966)
T ss_pred             HhhCCceeeeehhcchHHhhc-chHHHHHHHHHHhhcCCCc-ch--HHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcch
Confidence            999998889999998888777 8999999999999986553 22  3333333344455667777777777776422210


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHH
Q 001619          180 HHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKE  259 (1043)
Q Consensus       180 ~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~  259 (1043)
                      ..        .++    +.|                   .+++                                     
T Consensus       287 ~a--------~gN----la~-------------------iYye-------------------------------------  298 (966)
T KOG4626|consen  287 VA--------HGN----LAC-------------------IYYE-------------------------------------  298 (966)
T ss_pred             hh--------ccc----eEE-------------------EEec-------------------------------------
Confidence            00        000    000                   0110                                     


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCCh
Q 001619          260 ASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGR  339 (1043)
Q Consensus       260 a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~  339 (1043)
                      -..+..++..|+++|.        +.|+-.+.+...+.-++..|+..++...|.+||..|+++.+--.+++..+...|.+
T Consensus       299 qG~ldlAI~~Ykral~--------~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~  370 (966)
T KOG4626|consen  299 QGLLDLAIDTYKRALE--------LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKI  370 (966)
T ss_pred             cccHHHHHHHHHHHHh--------cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccc
Confidence            1122334556666664        45777888999999999899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001619          340 EIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEA  419 (1043)
Q Consensus       340 e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyeka  419 (1043)
                      +.|..+|++|+.+ .+.+..-+-..|.+....|++++|...|+.|+. ..|.++..+..........|+.+.|...|.+|
T Consensus       371 e~A~~ly~~al~v-~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr-I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rA  448 (966)
T KOG4626|consen  371 EEATRLYLKALEV-FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR-IKPTFADALSNMGNTYKEMGDVSAAIQCYTRA  448 (966)
T ss_pred             hHHHHHHHHHHhh-ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh-cCchHHHHHHhcchHHHHhhhHHHHHHHHHHH
Confidence            9999999999987 667777788888999999999999999999995 57888888888888899999999999999999


Q ss_pred             HHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCc
Q 001619          420 LETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDV  477 (1043)
Q Consensus       420 le~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~  477 (1043)
                      |..      .|++..           ...++...+.+..++..|-.-++.||...||.
T Consensus       449 I~~------nPt~Ae-----------AhsNLasi~kDsGni~~AI~sY~~aLklkPDf  489 (966)
T KOG4626|consen  449 IQI------NPTFAE-----------AHSNLASIYKDSGNIPEAIQSYRTALKLKPDF  489 (966)
T ss_pred             Hhc------CcHHHH-----------HHhhHHHHhhccCCcHHHHHHHHHHHccCCCC
Confidence            997      555443           33444445544445788999999999988886

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.77  E-value=3.7e-15  Score=196.26  Aligned_cols=405  Identities=12%  Similarity=0.058  Sum_probs=258.4

Q ss_pred             CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH------------HHHHH--HHHHH
Q 001619           53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVD------------VWFHY--CSLSM  118 (1043)
Q Consensus        53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~------------LWl~Y--~~~~~  118 (1043)
                      ++.+++...|+++|+.+|.+..+|..++......|++++|+..|++|++..|.+..            .|...  +....
T Consensus       283 g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~  362 (1157)
T PRK11447        283 GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAAL  362 (1157)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999887642            23322  33444


Q ss_pred             hhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCccHHHHHHHHHHHH-HHHHHhh
Q 001619          119 STFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLA-GAWKEEL  197 (1043)
Q Consensus       119 ~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~l~~~~~~y~~~~-~~~~e~l  197 (1043)
                      .. ++++.|+..|++|+..-|.   ....|..........|+++.|++.|++++++.+.+..........+. ...++++
T Consensus       363 ~~-g~~~eA~~~~~~Al~~~P~---~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~  438 (1157)
T PRK11447        363 KA-NNLAQAERLYQQARQVDNT---DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKAL  438 (1157)
T ss_pred             HC-CCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHH
Confidence            55 8999999999999998776   45677788888888999999999999999864443322221111111 1111111


Q ss_pred             hhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 001619          198 ECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRP  277 (1043)
Q Consensus       198 ~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~  277 (1043)
                      .        .+..+ ...         . ...+.+.       ........+ ......+....+...++..|+++++  
T Consensus       439 ~--------~l~~l-~~~---------~-~~~~~~~-------~~~l~~~~~-~~~a~~~~~~g~~~eA~~~~~~Al~--  489 (1157)
T PRK11447        439 A--------FIASL-SAS---------Q-RRSIDDI-------ERSLQNDRL-AQQAEALENQGKWAQAAELQRQRLA--  489 (1157)
T ss_pred             H--------HHHhC-CHH---------H-HHHHHHH-------HHHhhhhHH-HHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence            1        01000 000         0 0000000       000000000 0011112223344455667777775  


Q ss_pred             CCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-----
Q 001619          278 YFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQI-----  352 (1043)
Q Consensus       278 ~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~-----  352 (1043)
                            .+|.+..+|..++..+...|++++++.+|++++...|.....+..++.++...|+.++|...|+++...     
T Consensus       490 ------~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~  563 (1157)
T PRK11447        490 ------LDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSN  563 (1157)
T ss_pred             ------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChh
Confidence                  568888889999999989999999999999999988999999999999988888888888887753210     


Q ss_pred             --------------------------------H--hcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHH
Q 001619          353 --------------------------------F--LKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTF  398 (1043)
Q Consensus       353 --------------------------------~--~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~  398 (1043)
                                                      +  .+..+.+++..+.+..+.|++++|+.+|++++.. .|.....+..
T Consensus       564 ~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~-~P~~~~a~~~  642 (1157)
T PRK11447        564 IQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR-EPGNADARLG  642 (1157)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHH
Confidence                                            0  1223345555556666666666666666666542 3444555555


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCcc
Q 001619          399 KANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDVL  478 (1043)
Q Consensus       399 ~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~~  478 (1043)
                      .+.+....|++++|+++|+++++.      .|..+.++...        .......|.   .+.|..+|++++...|+..
T Consensus       643 la~~~~~~g~~~eA~~~l~~ll~~------~p~~~~~~~~l--------a~~~~~~g~---~~eA~~~~~~al~~~~~~~  705 (1157)
T PRK11447        643 LIEVDIAQGDLAAARAQLAKLPAT------ANDSLNTQRRV--------ALAWAALGD---TAAAQRTFNRLIPQAKSQP  705 (1157)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHhcc------CCCChHHHHHH--------HHHHHhCCC---HHHHHHHHHHHhhhCccCC
Confidence            555655566666666666655553      22223222111        111122333   5679999999988655431


Q ss_pred             ccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 001619          479 KVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLF  517 (1043)
Q Consensus       479 ~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~~  517 (1043)
                      .   ......++.....+.+..|..+.|...|.+++.+.
T Consensus       706 ~---~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~  741 (1157)
T PRK11447        706 P---SMESALVLRDAARFEAQTGQPQQALETYKDAMVAS  741 (1157)
T ss_pred             c---chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence            1   01122344445667778899999999999998755

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.75  E-value=2.5e-14  Score=188.48  Aligned_cols=418  Identities=11%  Similarity=0.030  Sum_probs=221.6

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHH----------------HHHHHHHHc
Q 001619           23 KQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWR----------------KYADHKARL   86 (1043)
Q Consensus        23 ~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~----------------~y~~~e~~~   86 (1043)
                      ...|++.+..+|.|.+.+...+..+...  ++.+.+...++++++..|.+..+|.                ..+++....
T Consensus        48 ~~~l~kl~~~~p~~p~~~~~~~~~~l~~--g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~  125 (1157)
T PRK11447         48 RQSLYRLELIDPNNPDVIAARFRLLLRQ--GDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATT  125 (1157)
T ss_pred             HHHHHHHHccCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhC
Confidence            3466777777777777777777766555  7777777778888888887777653                333345556


Q ss_pred             CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHH
Q 001619           87 CSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQ  166 (1043)
Q Consensus        87 ~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~  166 (1043)
                      |++++|..+|++++...|....+=..|...+....+..+.|++.|++++..-|.   +..+|..++.+....++.+.|..
T Consensus       126 g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~---~~~~~~~LA~ll~~~g~~~eAl~  202 (1157)
T PRK11447        126 GRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG---NTGLRNTLALLLFSSGRRDEGFA  202 (1157)
T ss_pred             CCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHccCCHHHHHH
Confidence            777778888888777777666554444444333335667777777777776665   45677777777777777777777


Q ss_pred             HHHHHhcCCCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHH
Q 001619          167 IFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAI  246 (1043)
Q Consensus       167 iy~raL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i  246 (1043)
                      +|++++..+...... ...+...+...                          .... +....+..+..           
T Consensus       203 ~l~~~~~~~~~~~~a-a~~~~~~l~~~--------------------------~~~~-~~~~~l~~~l~-----------  243 (1157)
T PRK11447        203 VLEQMAKSPAGRDAA-AQLWYGQIKDM--------------------------PVSD-ASVAALQKYLQ-----------  243 (1157)
T ss_pred             HHHHHhhCCCchHHH-HHHHHHHHhcc--------------------------CCCh-hhHHHHHHHHH-----------
Confidence            777776654321100 00000000000                          0000 00000000000           


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHH
Q 001619          247 QKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFW  326 (1043)
Q Consensus       247 ~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LW  326 (1043)
                               .|.........+..++......      .+|.....  .........|+++.++..|++++...|....+|
T Consensus       244 ---------~~p~~~~~~~A~~~L~~~~~~~------~dp~~~~~--~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~  306 (1157)
T PRK11447        244 ---------VFSDGDSVAAARSQLAEQQKQL------ADPAFRAR--AQGLAAVDSGQGGKAIPELQQAVRANPKDSEAL  306 (1157)
T ss_pred             ---------HCCCchHHHHHHHHHHHHHHhc------cCcchHHH--HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence                     0000000001111111111100      01111110  112222235566666666666666666666666


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHhcccch------------HHH--HHHHHHHHhCCHHHHHHHHHhhhhCCChhh
Q 001619          327 MRYVDFMESKGGREIASYALDRATQIFLKRLPV------------IHL--FNARYKEQIGDTSAARAAFPESYIDSDSRF  392 (1043)
Q Consensus       327 l~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~------------iwl--~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~  392 (1043)
                      ..++..+...|++++|+..|++|++. .++.+.            .|+  ..+....+.|++++|+..|++++.. .|..
T Consensus       307 ~~Lg~~~~~~g~~~eA~~~l~~Al~~-~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~-~P~~  384 (1157)
T PRK11447        307 GALGQAYSQQGDRARAVAQFEKALAL-DPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV-DNTD  384 (1157)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh-CCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCC
Confidence            66666666666666666666666654 222211            111  1233444556666666666666643 3333


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHH-----------------------------
Q 001619          393 IEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLT-----------------------------  443 (1043)
Q Consensus       393 ~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~-----------------------------  443 (1043)
                      ...+...+.+....|++++|++.|+++++.      .|.....+...+...                             
T Consensus       385 ~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~------~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~  458 (1157)
T PRK11447        385 SYAVLGLGDVAMARKDYAAAERYYQQALRM------DPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERS  458 (1157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            445555555666666666666666666654      333333332221110                             


Q ss_pred             -----HHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001619          444 -----YTELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFP  518 (1043)
Q Consensus       444 -----~~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~~p  518 (1043)
                           +..........|   ..+.|..+|++|+...|++         ..++..........|+.+.|..+++++++..|
T Consensus       459 l~~~~~~~~a~~~~~~g---~~~eA~~~~~~Al~~~P~~---------~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P  526 (1157)
T PRK11447        459 LQNDRLAQQAEALENQG---KWAQAAELQRQRLALDPGS---------VWLTYRLAQDLRQAGQRSQADALMRRLAQQKP  526 (1157)
T ss_pred             hhhhHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence                 000111111223   3678999999999998886         12233333344567999999999999999888


Q ss_pred             CCc
Q 001619          519 HTV  521 (1043)
Q Consensus       519 ~~~  521 (1043)
                      ...
T Consensus       527 ~~~  529 (1157)
T PRK11447        527 NDP  529 (1157)
T ss_pred             CCH
Confidence            654

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.75  E-value=3.5e-14  Score=179.18  Aligned_cols=426  Identities=8%  Similarity=-0.047  Sum_probs=254.1

Q ss_pred             hCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 001619           32 EGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWF  111 (1043)
Q Consensus        32 ~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl  111 (1043)
                      .+|.-+..|+.++...     ++.+++..+|++++...|.....|..++......+++++|..+|+++|...|.+++.|.
T Consensus        13 ~~~~~~~d~~~ia~~~-----g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~   87 (765)
T PRK10049         13 LSNNQIADWLQIALWA-----GQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQR   87 (765)
T ss_pred             CCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            3445566666666532     45666667777777666777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCccHHHHHHHHHHHHH
Q 001619          112 HYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAG  191 (1043)
Q Consensus       112 ~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~l~~~~~~y~~~~~  191 (1043)
                      .++..+... ++.+.|...+++++..-|.   ... |..++......|+.+.|...|++++++.+.+....+. +...+.
T Consensus        88 ~la~~l~~~-g~~~eA~~~l~~~l~~~P~---~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~-la~~l~  161 (765)
T PRK10049         88 GLILTLADA-GQYDEALVKAKQLVSGAPD---KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTE-YVQALR  161 (765)
T ss_pred             HHHHHHHHC-CCHHHHHHHHHHHHHhCCC---CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHH
Confidence            776666666 6677777777777766554   334 6666666666677777777777777654443222221 111111


Q ss_pred             H---HHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001619          192 A---WKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKIN  268 (1043)
Q Consensus       192 ~---~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~  268 (1043)
                      .   .+.++.        .+. .+..        ..+....+. +   ......++..+.........|.   ....++.
T Consensus       162 ~~~~~e~Al~--------~l~-~~~~--------~p~~~~~l~-~---~~~~~~~r~~~~~~~~~~~r~~---~ad~Al~  217 (765)
T PRK10049        162 NNRLSAPALG--------AID-DANL--------TPAEKRDLE-A---DAAAELVRLSFMPTRSEKERYA---IADRALA  217 (765)
T ss_pred             HCCChHHHHH--------HHH-hCCC--------CHHHHHHHH-H---HHHHHHHHhhcccccChhHHHH---HHHHHHH
Confidence            0   000110        000 0000        000000000 0   0000000000000000000010   1123344


Q ss_pred             HHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccC---CCcHHHHHHHHHHHHHcCChHHHHHH
Q 001619          269 CFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPC---ADYPEFWMRYVDFMESKGGREIASYA  345 (1043)
Q Consensus       269 ~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~---~~~~~LWl~yAk~~e~~g~~e~Ar~i  345 (1043)
                      .|+.++... .......+.....+..++..+...|+++.|+..|++++...   |.+..+|+  +..+...|+.++|..+
T Consensus       218 ~~~~ll~~~-~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~l--a~~yl~~g~~e~A~~~  294 (765)
T PRK10049        218 QYDALEALW-HDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWV--ASAYLKLHQPEKAQSI  294 (765)
T ss_pred             HHHHHHhhc-ccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHH--HHHHHhcCCcHHHHHH
Confidence            555555321 01111123333444443333345689999999999999864   66677885  7777888999999999


Q ss_pred             HHHHHHHHhccc----chHHHHHHHHHHHhCCHHHHHHHHHhhhhCCC--------------hhhHHHHHHHHHHHHHcC
Q 001619          346 LDRATQIFLKRL----PVIHLFNARYKEQIGDTSAARAAFPESYIDSD--------------SRFIEKVTFKANMERRLG  407 (1043)
Q Consensus       346 lerA~~~~~~~~----p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~--------------~~~~~lw~~~a~lE~~~G  407 (1043)
                      |++++.. .+..    ...+...+....+.|++++|..++.++....+              .....++...+.+....|
T Consensus       295 l~~~l~~-~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g  373 (765)
T PRK10049        295 LTELFYH-PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN  373 (765)
T ss_pred             HHHHhhc-CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcC
Confidence            9998865 3322    13344445556889999999999999886421              123456677888888899


Q ss_pred             CHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHH
Q 001619          408 NFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVE  487 (1043)
Q Consensus       408 ~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~  487 (1043)
                      ++++|+++|++++..      .|..+.+++..|.        .....|.   .+.|..++++|+...|++         .
T Consensus       374 ~~~eA~~~l~~al~~------~P~n~~l~~~lA~--------l~~~~g~---~~~A~~~l~~al~l~Pd~---------~  427 (765)
T PRK10049        374 DLPQAEMRARELAYN------APGNQGLRIDYAS--------VLQARGW---PRAAENELKKAEVLEPRN---------I  427 (765)
T ss_pred             CHHHHHHHHHHHHHh------CCCCHHHHHHHHH--------HHHhcCC---HHHHHHHHHHHHhhCCCC---------h
Confidence            999999999999997      6777776655433        3333444   568999999999999987         1


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Q 001619          488 DISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVR  522 (1043)
Q Consensus       488 ~l~~lwl~fee~~G~~~~a~~~~~ra~k~~p~~~~  522 (1043)
                      .+...........|+.+.|.+++.++++..|.+..
T Consensus       428 ~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~  462 (765)
T PRK10049        428 NLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG  462 (765)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence            22333333445679999999999999999998654

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.74  E-value=1.3e-14  Score=179.60  Aligned_cols=314  Identities=13%  Similarity=0.026  Sum_probs=197.7

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 001619           24 QGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSA  103 (1043)
Q Consensus        24 ~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~  103 (1043)
                      ..|+..+..+|.+.+.+..++......  ++.+.+..+|++++...|.+...|...+......|++++|...|++|+...
T Consensus        63 ~l~~~~l~~~p~~~~~l~~l~~~~l~~--g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~  140 (656)
T PRK15174         63 TLLSDRVLTAKNGRDLLRRWVISPLAS--SQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF  140 (656)
T ss_pred             HHhHHHHHhCCCchhHHHHHhhhHhhc--CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            344555555555555555554433333  555555555555555555555555555555555555555555555555555


Q ss_pred             CCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcC-CCccHHHH
Q 001619          104 TYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRF-PSKKLHHY  182 (1043)
Q Consensus       104 P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~-p~~~l~~~  182 (1043)
                      |.++.+|...+..+... ++.+.|..+|++++...|.   +...|...+. ....|+++.|..+|++++.. |... ...
T Consensus       141 P~~~~a~~~la~~l~~~-g~~~eA~~~~~~~~~~~P~---~~~a~~~~~~-l~~~g~~~eA~~~~~~~l~~~~~~~-~~~  214 (656)
T PRK15174        141 SGNSQIFALHLRTLVLM-DKELQAISLARTQAQEVPP---RGDMIATCLS-FLNKSRLPEDHDLARALLPFFALER-QES  214 (656)
T ss_pred             CCcHHHHHHHHHHHHHC-CChHHHHHHHHHHHHhCCC---CHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCcc-hhH
Confidence            55555555555555444 5555555555555544443   2223322222 23345555555555555442 1110 000


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 001619          183 YDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQ  262 (1043)
Q Consensus       183 ~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~  262 (1043)
                      +.    ...                                                               ..+.....
T Consensus       215 ~~----~l~---------------------------------------------------------------~~l~~~g~  227 (656)
T PRK15174        215 AG----LAV---------------------------------------------------------------DTLCAVGK  227 (656)
T ss_pred             HH----HHH---------------------------------------------------------------HHHHHCCC
Confidence            00    000                                                               00000011


Q ss_pred             HHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHH----HHHHHHHHhccCCCcHHHHHHHHHHHHHcCC
Q 001619          263 LDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDW----VVKLYERCLIPCADYPEFWMRYVDFMESKGG  338 (1043)
Q Consensus       263 ~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~----~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~  338 (1043)
                      ...+...|++++.        .+|.+...|..++..+...|+++.    +...|++|+...|+...+|..++..+...|+
T Consensus       228 ~~eA~~~~~~al~--------~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~  299 (656)
T PRK15174        228 YQEAIQTGESALA--------RGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQ  299 (656)
T ss_pred             HHHHHHHHHHHHh--------cCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC
Confidence            1122334444443        357778888888888888888774    8999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001619          339 REIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKE  418 (1043)
Q Consensus       339 ~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyek  418 (1043)
                      +++|...|++++.. .|+.+.++..++......|++++|+..|.+++.. .|.....+...+.+....|++++|++.|++
T Consensus       300 ~~eA~~~l~~al~l-~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~-~P~~~~~~~~~a~al~~~G~~deA~~~l~~  377 (656)
T PRK15174        300 NEKAIPLLQQSLAT-HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE-KGVTSKWNRYAAAALLQAGKTSEAESVFEH  377 (656)
T ss_pred             HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            99999999999987 6778889999999999999999999999999864 344444455556677888999999999999


Q ss_pred             HHHH
Q 001619          419 ALET  422 (1043)
Q Consensus       419 ale~  422 (1043)
                      +++.
T Consensus       378 al~~  381 (656)
T PRK15174        378 YIQA  381 (656)
T ss_pred             HHHh
Confidence            9997

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.72  E-value=4.5e-14  Score=174.80  Aligned_cols=325  Identities=10%  Similarity=-0.001  Sum_probs=252.5

Q ss_pred             CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHH
Q 001619           53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFK  132 (1043)
Q Consensus        53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lfe  132 (1043)
                      ++...+..+++..+...|.....+..++......|+++.|...|++++...|.+.+.|...+..+... ++.+.|...|+
T Consensus        56 g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~-g~~~~Ai~~l~  134 (656)
T PRK15174         56 DETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS-KQYATVADLAE  134 (656)
T ss_pred             CCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence            88999999999999999999999999998888899999999999999999999999999999998888 89999999999


Q ss_pred             HHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q 001619          133 RALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELV  212 (1043)
Q Consensus       133 rAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i  212 (1043)
                      +|+..-|.   ....|...+......|+++.|..+|++++...+.....+.. ...+.                      
T Consensus       135 ~Al~l~P~---~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~-~~~l~----------------------  188 (656)
T PRK15174        135 QAWLAFSG---NSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIAT-CLSFL----------------------  188 (656)
T ss_pred             HHHHhCCC---cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHH-HHHHH----------------------
Confidence            99998776   56789999999999999999999999887643332111110 00000                      


Q ss_pred             hccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCh-HHHHH
Q 001619          213 LEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDD-IQLKN  291 (1043)
Q Consensus       213 ~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p-~~~~~  291 (1043)
                      ..                       +.                 ++++..      .++..+..        +| .....
T Consensus       189 ~~-----------------------g~-----------------~~eA~~------~~~~~l~~--------~~~~~~~~  214 (656)
T PRK15174        189 NK-----------------------SR-----------------LPEDHD------LARALLPF--------FALERQES  214 (656)
T ss_pred             Hc-----------------------CC-----------------HHHHHH------HHHHHHhc--------CCCcchhH
Confidence            00                       00                 111111      12222221        11 11122


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHH----HHHHHHHHHHHHhcccchHHHHHHHH
Q 001619          292 WHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREI----ASYALDRATQIFLKRLPVIHLFNARY  367 (1043)
Q Consensus       292 W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~----Ar~ilerA~~~~~~~~p~iwl~~A~~  367 (1043)
                      +...+..+...|+++.+...|++++...|....+|..++..+...|++++    |...|++|+.. .|+.+.+|..++.+
T Consensus       215 ~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-~P~~~~a~~~lg~~  293 (656)
T PRK15174        215 AGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF-NSDNVRIVTLYADA  293 (656)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh-CCCCHHHHHHHHHH
Confidence            23334455568999999999999999999999999999999999999885    89999999987 77888999999999


Q ss_pred             HHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHH
Q 001619          368 KEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTEL  447 (1043)
Q Consensus       368 E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~  447 (1043)
                      ....|++++|...|++++.. .|....++..++.+....|+++.|+..|+++++.      .|..+.+++.        .
T Consensus       294 l~~~g~~~eA~~~l~~al~l-~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~------~P~~~~~~~~--------~  358 (656)
T PRK15174        294 LIRTGQNEKAIPLLQQSLAT-HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE------KGVTSKWNRY--------A  358 (656)
T ss_pred             HHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CccchHHHHH--------H
Confidence            99999999999999999964 5666778888899999999999999999999986      4443322211        1


Q ss_pred             HHHHHHhCCCchHHHHHHHHHHHhhcCCCc
Q 001619          448 IKFTMVHGGRSHISIVDAVISNALYSRPDV  477 (1043)
Q Consensus       448 ~~fe~~~g~~~~leraR~l~erAl~~~p~~  477 (1043)
                      .......|+   .+.|...|++++..+|+.
T Consensus       359 a~al~~~G~---~deA~~~l~~al~~~P~~  385 (656)
T PRK15174        359 AAALLQAGK---TSEAESVFEHYIQARASH  385 (656)
T ss_pred             HHHHHHCCC---HHHHHHHHHHHHHhChhh
Confidence            122233454   568999999999988875

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.72  E-value=2e-13  Score=168.85  Aligned_cols=407  Identities=11%  Similarity=0.087  Sum_probs=268.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 001619           76 WRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFE  155 (1043)
Q Consensus        76 W~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe  155 (1043)
                      ++..+....+.|++++|...|++||...|. ..+|...+...... ++.++|...|++||..-|.   ....|.......
T Consensus       130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l-~~~~~Ai~~~~~al~l~p~---~~~a~~~~a~a~  204 (615)
T TIGR00990       130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNAL-GDWEKVVEDTTAALELDPD---YSKALNRRANAY  204 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHh-CCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHH
Confidence            455566667789999999999999999995 67888888777777 8999999999999997665   457888888888


Q ss_pred             HHhhhhhhHHHHHHHHhcCCCccHHHHHHHHHHHHHH-----HHHhhhhhhhh--hHHHHHHhhhccccccCccchhhhH
Q 001619          156 ISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGA-----WKEELECESDS--AMEFQSELVLEGEVPAYYKDDETSS  228 (1043)
Q Consensus       156 ~~~~~~e~a~~iy~raL~~p~~~l~~~~~~y~~~~~~-----~~e~l~~~~~~--~~~~~~e~i~~~~l~~~~~~~e~~~  228 (1043)
                      ...|+++.|..-|..++.++..........+...+..     ..+.+......  ....+................    
T Consensus       205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  280 (615)
T TIGR00990       205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGL----  280 (615)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhh----
Confidence            8889999999888877655433211111111111111     00001000000  000000000000000000000    


Q ss_pred             HHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHH
Q 001619          229 VIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWV  308 (1043)
Q Consensus       229 ~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~  308 (1043)
                        ....+.......+. +........  .........+...|++++...     ...|.....|..++.+....|+++.+
T Consensus       281 --~~~~~~~~~~~~~~-~~l~~~~~e--~~~~~~y~~A~~~~~~al~~~-----~~~~~~a~a~~~lg~~~~~~g~~~eA  350 (615)
T TIGR00990       281 --EDSNELDEETGNGQ-LQLGLKSPE--SKADESYEEAARAFEKALDLG-----KLGEKEAIALNLRGTFKCLKGKHLEA  350 (615)
T ss_pred             --hcccccccccccch-HHHHHHHHH--hhhhhhHHHHHHHHHHHHhcC-----CCChhhHHHHHHHHHHHHHcCCHHHH
Confidence              00000000000000 000000000  000112223345566666421     23577788899988888889999999


Q ss_pred             HHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCC
Q 001619          309 VKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDS  388 (1043)
Q Consensus       309 ~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~  388 (1043)
                      +..|++++...|.....|+.++..+...|++++|...|++++.. .++.+.+|...+.+....|++++|+..|++++.. 
T Consensus       351 ~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l-  428 (615)
T TIGR00990       351 LADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL-NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL-  428 (615)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Confidence            99999999999999999999999999999999999999999987 7788899999999999999999999999999964 


Q ss_pred             ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 001619          389 DSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVIS  468 (1043)
Q Consensus       389 ~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~leraR~l~e  468 (1043)
                      .|+....|...+.+..+.|++++|..+|++++..      +|..+.+|..++.        .....|.   .+.|...|+
T Consensus       429 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~------~P~~~~~~~~lg~--------~~~~~g~---~~~A~~~~~  491 (615)
T TIGR00990       429 DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN------FPEAPDVYNYYGE--------LLLDQNK---FDEAIEKFD  491 (615)
T ss_pred             CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCChHHHHHHHH--------HHHHccC---HHHHHHHHH
Confidence            5667788999999999999999999999999997      6666766644432        2222343   678999999


Q ss_pred             HHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Q 001619          469 NALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVR  522 (1043)
Q Consensus       469 rAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~~p~~~~  522 (1043)
                      +|+..+|+..... . ....++...+.+.+..|+.+.|..++.++++.-|....
T Consensus       492 ~Al~l~p~~~~~~-~-~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~  543 (615)
T TIGR00990       492 TAIELEKETKPMY-M-NVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDI  543 (615)
T ss_pred             HHHhcCCcccccc-c-cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence            9999887642111 0 01111222222333459999999999999999876543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.64  E-value=1.4e-12  Score=164.75  Aligned_cols=392  Identities=10%  Similarity=-0.019  Sum_probs=273.1

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 001619           24 QGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSA  103 (1043)
Q Consensus        24 ~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~  103 (1043)
                      ..+.+.+..+|.+...|..++..+...  ++..++..+|+++|+..|.+...|..++......|++++|..++++++...
T Consensus        36 ~~~~~~~~~~~~~a~~~~~lA~~~~~~--g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~  113 (765)
T PRK10049         36 TVYNRYRVHMQLPARGYAAVAVAYRNL--KQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA  113 (765)
T ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            456666667899999999999888877  899999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHH---------HhcC
Q 001619          104 TYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQ---------TLRF  174 (1043)
Q Consensus       104 P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~r---------aL~~  174 (1043)
                      |.+.. |..++..+... ++.+.|..+|++|++.-|.   ...+|..++......+..+.|.+.+++         .+..
T Consensus       114 P~~~~-~~~la~~l~~~-g~~~~Al~~l~~al~~~P~---~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~  188 (765)
T PRK10049        114 PDKAN-LLALAYVYKRA-GRHWDELRAMTQALPRAPQ---TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEA  188 (765)
T ss_pred             CCCHH-HHHHHHHHHHC-CCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHH
Confidence            99999 99999888877 8999999999999998886   567888888888777777767766662         2211


Q ss_pred             -CCccHHH-HHH----HHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHH
Q 001619          175 -PSKKLHH-YYD----SFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQK  248 (1043)
Q Consensus       175 -p~~~l~~-~~~----~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~  248 (1043)
                       +....-. ...    ....+ ...++++.        .+..++..-.     ...+          ....+.+++....
T Consensus       189 ~~~~~~~r~~~~~~~~~~~r~-~~ad~Al~--------~~~~ll~~~~-----~~p~----------~~~~~~~a~~d~l  244 (765)
T PRK10049        189 DAAAELVRLSFMPTRSEKERY-AIADRALA--------QYDALEALWH-----DNPD----------ATADYQRARIDRL  244 (765)
T ss_pred             HHHHHHHHhhcccccChhHHH-HHHHHHHH--------HHHHHHhhcc-----cCCc----------cchHHHHHHHHHH
Confidence             1000000 000    00000 00011111        0000000000     0000          0000111110000


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCc----HH
Q 001619          249 YRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADY----PE  324 (1043)
Q Consensus       249 ~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~----~~  324 (1043)
                           ...+ .......++..|+++++..     ...|.....|.  +..+...|++++|+.+|++++...+..    ..
T Consensus       245 -----~~Ll-~~g~~~eA~~~~~~ll~~~-----~~~P~~a~~~l--a~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~  311 (765)
T PRK10049        245 -----GALL-ARDRYKDVISEYQRLKAEG-----QIIPPWAQRWV--ASAYLKLHQPEKAQSILTELFYHPETIADLSDE  311 (765)
T ss_pred             -----HHHH-HhhhHHHHHHHHHHhhccC-----CCCCHHHHHHH--HHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChH
Confidence                 0001 1123334555677766431     12467777885  556666899999999999998765543    45


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHhc------------c--cchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCCh
Q 001619          325 FWMRYVDFMESKGGREIASYALDRATQIFLK------------R--LPVIHLFNARYKEQIGDTSAARAAFPESYIDSDS  390 (1043)
Q Consensus       325 LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~------------~--~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~  390 (1043)
                      .+..++..+...|++++|..+|+++.....+            +  ...++...+.+....|++++|+++|++++.. .|
T Consensus       312 ~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P  390 (765)
T PRK10049        312 ELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-AP  390 (765)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC
Confidence            6777777778889999999999999876211            1  1235667888999999999999999999864 56


Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 001619          391 RFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNA  470 (1043)
Q Consensus       391 ~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~leraR~l~erA  470 (1043)
                      ....+|...+.+....|++++|.++|+++++.      .|..+.+++..+.        .....|.   .+.|..+++++
T Consensus       391 ~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l------~Pd~~~l~~~~a~--------~al~~~~---~~~A~~~~~~l  453 (765)
T PRK10049        391 GNQGLRIDYASVLQARGWPRAAENELKKAEVL------EPRNINLEVEQAW--------TALDLQE---WRQMDVLTDDV  453 (765)
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCChHHHHHHHH--------HHHHhCC---HHHHHHHHHHH
Confidence            67889999999999999999999999999998      6766665543322        1122233   67899999999


Q ss_pred             hhcCCCc
Q 001619          471 LYSRPDV  477 (1043)
Q Consensus       471 l~~~p~~  477 (1043)
                      +...|++
T Consensus       454 l~~~Pd~  460 (765)
T PRK10049        454 VAREPQD  460 (765)
T ss_pred             HHhCCCC
Confidence            9999987

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=99.62  E-value=6e-12  Score=141.09  Aligned_cols=131  Identities=16%  Similarity=0.291  Sum_probs=111.7

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHhc--------C-----------CCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001619           24 QGLEEFIAEGSLDFDEWTSLLSEIENS--------C-----------PDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKA   84 (1043)
Q Consensus        24 ~~le~~i~~nP~d~~~W~~~i~~le~~--------~-----------~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~   84 (1043)
                      ..||..|.+--.+...+++||.. |..        +           -.-..++-.+|++|+..|+..+++|..|+.+..
T Consensus        38 r~fE~kL~rr~~~i~Dfi~YI~Y-E~nl~~lr~kR~Kk~~~k~S~sd~si~~rIv~lyr~at~rf~~D~~lW~~yi~f~k  116 (568)
T KOG2396|consen   38 RDFELKLQRRTLSIEDFINYIQY-EINLEELRAKRRKKKRVKYSFSDDSIPNRIVFLYRRATNRFNGDVKLWLSYIAFCK  116 (568)
T ss_pred             HHHHHHHccCcccHHHHHHHHHH-HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            35777788888888888888774 321        0           011245678999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHh
Q 001619           85 RLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQ  158 (1043)
Q Consensus        85 ~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~  158 (1043)
                      +.+.+.++.++|..+|..+|++++||+.-|.++.+...+++.||.+|-|+|+..|.   ++.||..|.++|...
T Consensus       117 k~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npd---sp~Lw~eyfrmEL~~  187 (568)
T KOG2396|consen  117 KKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPD---SPKLWKEYFRMELMY  187 (568)
T ss_pred             HhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCC---ChHHHHHHHHHHHHH
Confidence            88889999999999999999999999999999988756799999999999998876   789999999999865

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=99.62  E-value=3.6e-13  Score=148.01  Aligned_cols=392  Identities=14%  Similarity=0.157  Sum_probs=244.4

Q ss_pred             CCCccHHHHHHHHHhCCCCHHHHHHHHH-HHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------HH
Q 001619           18 PVGFGKQGLEEFIAEGSLDFDEWTSLLS-EIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCS------ID   90 (1043)
Q Consensus        18 ~~~~~~~~le~~i~~nP~d~~~W~~~i~-~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~------~e   90 (1043)
                      +.+...+.|++...-+|+-..+|.-|+. ++..   .++..+..+|-|+|..- +++++|.-|++.-.+..+      .-
T Consensus        57 s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~---~df~svE~lf~rCL~k~-l~ldLW~lYl~YIRr~n~~~tGq~r~  132 (660)
T COG5107          57 SMDAEREMYEQLSSPFPIMEHAWRLYMSGELAR---KDFRSVESLFGRCLKKS-LNLDLWMLYLEYIRRVNNLITGQKRF  132 (660)
T ss_pred             hHHHHHHHHHHhcCCCccccHHHHHHhcchhhh---hhHHHHHHHHHHHHhhh-ccHhHHHHHHHHHHhhCcccccchhh
Confidence            3455677889999999999999999987 2333   58899999999999886 679999999998765431      12


Q ss_pred             HHHHHHHHHHH---hcCCCHHHHHHHHHHHHhhC--------CChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhh
Q 001619           91 KVVEVFERAVQ---SATYSVDVWFHYCSLSMSTF--------EDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQ  159 (1043)
Q Consensus        91 ~a~~lfeRAL~---~~P~s~~LWl~Y~~~~~~~~--------~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~  159 (1043)
                      ...++|+=.+.   +.|.+..+|-.|+.|+....        ..++.+|+.|.|||. .|++- -..+|..|-.||.+..
T Consensus       133 ~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~-tP~~n-leklW~dy~~fE~e~N  210 (660)
T COG5107         133 KIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQ-TPMGN-LEKLWKDYENFELELN  210 (660)
T ss_pred             hhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHc-Ccccc-HHHHHHHHHHHHHHHH
Confidence            33444444333   35899999999999975431        247889999999986 56653 3689999999998764


Q ss_pred             hhhhHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCch-
Q 001619          160 RWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSV-  238 (1043)
Q Consensus       160 ~~e~a~~iy~raL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~-  238 (1043)
                      .. +||++.-..  .|  -.-.....|.++..-.. .+........+.... +       ..+.+-.|...-+|....+ 
T Consensus       211 ~~-TarKfvge~--sp--~ym~ar~~yqe~~nlt~-Gl~v~~~~~~Rt~nK-~-------~r~s~S~WlNwIkwE~en~l  276 (660)
T COG5107         211 KI-TARKFVGET--SP--IYMSARQRYQEIQNLTR-GLSVKNPINLRTANK-A-------ARTSDSNWLNWIKWEMENGL  276 (660)
T ss_pred             HH-HHHHHhccc--CH--HHHHHHHHHHHHHHHhc-cccccCchhhhhhcc-c-------cccccchhhhHhhHhhcCCc
Confidence            33 233332111  11  01112223333332210 000000000000000 0       0011112332223321111 


Q ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001619          239 ----DLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYER  314 (1043)
Q Consensus       239 ----~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyer  314 (1043)
                          +....|                     --..|+.+|.        -.+...++|..|-.+....++..+|..+-+|
T Consensus       277 ~L~~~~~~qR---------------------i~y~~~q~~~--------y~~~~~evw~dys~Y~~~isd~q~al~tv~r  327 (660)
T COG5107         277 KLGGRPHEQR---------------------IHYIHNQILD--------YFYYAEEVWFDYSEYLIGISDKQKALKTVER  327 (660)
T ss_pred             ccCCCcHHHH---------------------HHHHHHHHHH--------HhhhhHHHHHHHHHHHhhccHHHHHHHHHHh
Confidence                100000                     1113344442        1245678999999999888888999999999


Q ss_pred             HhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcc-----------------------------cchHHHHHH
Q 001619          315 CLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKR-----------------------------LPVIHLFNA  365 (1043)
Q Consensus       315 Al~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~-----------------------------~p~iwl~~A  365 (1043)
                      ++..||.   |-+.|+.+++..+|-+..+..|++++....+.                             ..-+||-+.
T Consensus       328 g~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~  404 (660)
T COG5107         328 GIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHL  404 (660)
T ss_pred             cccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHH
Confidence            9877665   78888999998888888889888887743210                             114677788


Q ss_pred             HHHHHhCCHHHHHHHHHhhhhCCC----------------------------------hhhHHHHHHHHHHHHHcCCHHH
Q 001619          366 RYKEQIGDTSAARAAFPESYIDSD----------------------------------SRFIEKVTFKANMERRLGNFVA  411 (1043)
Q Consensus       366 ~~E~~~g~~d~Ar~ll~ral~~~~----------------------------------~~~~~lw~~~a~lE~~~G~~e~  411 (1043)
                      ..-.|...++.||++|.++.+...                                  ++..-+..+|..|..+.++-+.
T Consensus       405 N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~n  484 (660)
T COG5107         405 NYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEEN  484 (660)
T ss_pred             HHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHH
Confidence            888888899999999998876431                                  1222234456666667777777


Q ss_pred             HHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCC
Q 001619          412 ACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPD  476 (1043)
Q Consensus       412 Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~~~p~  476 (1043)
                      ||++|+++++..-.+            -+..+|..|+.+|.++|+   +..+-++=+|.....|.
T Consensus       485 araLFetsv~r~~~~------------q~k~iy~kmi~YEs~~G~---lN~v~sLe~rf~e~~pQ  534 (660)
T COG5107         485 ARALFETSVERLEKT------------QLKRIYDKMIEYESMVGS---LNNVYSLEERFRELVPQ  534 (660)
T ss_pred             HHHHHHHhHHHHHHh------------hhhHHHHHHHHHHHhhcc---hHHHHhHHHHHHHHcCc
Confidence            777777777653211            134567889999999998   44566666666665554

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=99.62  E-value=2.4e-15  Score=166.86  Aligned_cols=133  Identities=22%  Similarity=0.386  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 001619           39 EWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARL-CSIDKVVEVFERAVQSATYSVDVWFHYCSLS  117 (1043)
Q Consensus        39 ~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~-~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~  117 (1043)
                      .|+.|++++++.  +.++.+|.||++|++..+.++.+|.+++.+|... ++.+.|++|||+||+.+|.++++|+.|++|+
T Consensus         3 v~i~~m~~~~r~--~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    3 VWIQYMRFMRRT--EGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHH--HHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh--CChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            699999999887  7899999999999988888999999999999985 5666799999999999999999999999999


Q ss_pred             HhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcC
Q 001619          118 MSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRF  174 (1043)
Q Consensus       118 ~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~  174 (1043)
                      +.. ++++.||.||+||+..++.+..+..||..|++||..+|+.+.+++|+.|+...
T Consensus        81 ~~~-~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   81 IKL-NDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             HHT-T-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHh-CcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            998 89999999999999999876545689999999999999999999999999764

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.59  E-value=7.9e-15  Score=163.36  Aligned_cols=267  Identities=18%  Similarity=0.113  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHH
Q 001619           74 GYWRKYADHKARLCSIDKVVEVFERAVQSA--TYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKY  151 (1043)
Q Consensus        74 ~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~--P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~y  151 (1043)
                      +..+.++.+....|++++|..++++++...  |.++++|..++.+.... ++.+.|+..|++.+..-+.   +......+
T Consensus         9 ~~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~-~~~~~A~~ay~~l~~~~~~---~~~~~~~l   84 (280)
T PF13429_consen    9 EEALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSL-GDYDEAIEAYEKLLASDKA---NPQDYERL   84 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccc---cccccccc
Confidence            444566666666777777777776665544  66777777777766665 6677777777776653222   23445555


Q ss_pred             HHHHHHhhhhhhHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHH
Q 001619          152 IEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIK  231 (1043)
Q Consensus       152 i~fe~~~~~~e~a~~iy~raL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~  231 (1043)
                      +.+ ...++++.+.+++.+++......  ..+..+......                                       
T Consensus        85 ~~l-~~~~~~~~A~~~~~~~~~~~~~~--~~l~~~l~~~~~---------------------------------------  122 (280)
T PF13429_consen   85 IQL-LQDGDPEEALKLAEKAYERDGDP--RYLLSALQLYYR---------------------------------------  122 (280)
T ss_dssp             ------------------------------------H-HHH---------------------------------------
T ss_pred             ccc-ccccccccccccccccccccccc--chhhHHHHHHHH---------------------------------------
Confidence            555 45566666666666554422110  000000000000                                       


Q ss_pred             hhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHH
Q 001619          232 DLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKL  311 (1043)
Q Consensus       232 ~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~l  311 (1043)
                                            ...|+++..++...   +...         ..+.+...|..++.++.+.|+++.+..+
T Consensus       123 ----------------------~~~~~~~~~~l~~~---~~~~---------~~~~~~~~~~~~a~~~~~~G~~~~A~~~  168 (280)
T PF13429_consen  123 ----------------------LGDYDEAEELLEKL---EELP---------AAPDSARFWLALAEIYEQLGDPDKALRD  168 (280)
T ss_dssp             ----------------------TT-HHHHHHHHHHH---HH-T------------T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             ----------------------HhHHHHHHHHHHHH---Hhcc---------CCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence                                  00011111111111   1000         1245678999999999999999999999


Q ss_pred             HHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChh
Q 001619          312 YERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSR  391 (1043)
Q Consensus       312 yerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~  391 (1043)
                      |++||...|+...++..++.++...|+.++++.++.+.... .+..+.+|..++......|++++|...|+++++. .|+
T Consensus       169 ~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~-~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p~  246 (280)
T PF13429_consen  169 YRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA-APDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NPD  246 (280)
T ss_dssp             HHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-STT
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CcCHHHHHHHHHHHhccccccccccccccccccc-ccc
Confidence            99999999999999999999999999999999999888776 4678889999999999999999999999999964 566


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619          392 FIEKVTFKANMERRLGNFVAACDTYKEALET  422 (1043)
Q Consensus       392 ~~~lw~~~a~lE~~~G~~e~Ar~lyekale~  422 (1043)
                      ...+...|+++....|..++|..++.+++..
T Consensus       247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  247 DPLWLLAYADALEQAGRKDEALRLRRQALRL  277 (280)
T ss_dssp             -HHHHHHHHHHHT------------------
T ss_pred             ccccccccccccccccccccccccccccccc
Confidence            6778899999999999999999999999875

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.58  E-value=8e-12  Score=145.70  Aligned_cols=305  Identities=14%  Similarity=0.102  Sum_probs=203.1

Q ss_pred             HHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCC-CcHHHHHHHHHHHHHhhhhh
Q 001619           84 ARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDY-LCHTMWDKYIEFEISQQRWS  162 (1043)
Q Consensus        84 ~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~-~s~~IW~~yi~fe~~~~~~e  162 (1043)
                      ...|++++|..+|++++...|.++.+|...+.++... +++++|..+|++++...+... ....+|..++......|+++
T Consensus        46 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~  124 (389)
T PRK11788         46 LLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRR-GEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD  124 (389)
T ss_pred             HhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc-CcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence            4557888888899999888888888888888887777 788888888888877432211 01245666666667778888


Q ss_pred             hHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHH
Q 001619          163 SLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVR  242 (1043)
Q Consensus       163 ~a~~iy~raL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~  242 (1043)
                      .|.++|.+++.........    +......                   .                              
T Consensus       125 ~A~~~~~~~l~~~~~~~~~----~~~la~~-------------------~------------------------------  151 (389)
T PRK11788        125 RAEELFLQLVDEGDFAEGA----LQQLLEI-------------------Y------------------------------  151 (389)
T ss_pred             HHHHHHHHHHcCCcchHHH----HHHHHHH-------------------H------------------------------
Confidence            8888888888753222110    0000000                   0                              


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCc
Q 001619          243 SKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADY  322 (1043)
Q Consensus       243 ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~  322 (1043)
                               .....|+++      +..|+..++..   ...........|..++..+...|+++.+..+|++++...+..
T Consensus       152 ---------~~~g~~~~A------~~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  213 (389)
T PRK11788        152 ---------QQEKDWQKA------IDVAERLEKLG---GDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQC  213 (389)
T ss_pred             ---------HHhchHHHH------HHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC
Confidence                     000001111      11222222210   000011123355666777777899999999999999988999


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHH
Q 001619          323 PEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANM  402 (1043)
Q Consensus       323 ~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~l  402 (1043)
                      ...|+.++..+...|++++|..+|+++........+.+|...+......|++++|...|++++.. .|+. .++...+.+
T Consensus       214 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-~p~~-~~~~~la~~  291 (389)
T PRK11788        214 VRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-YPGA-DLLLALAQL  291 (389)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCc-hHHHHHHHH
Confidence            99999999999999999999999999987622223456777788888999999999999999864 3433 345777888


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHH-H--hCC-CchHHHHHHHHHHHhhcCCCc
Q 001619          403 ERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTM-V--HGG-RSHISIVDAVISNALYSRPDV  477 (1043)
Q Consensus       403 E~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~-~--~g~-~~~leraR~l~erAl~~~p~~  477 (1043)
                      ..+.|+++.|+.+|+++++.      +|....+.         .++.... .  .|. ...++.++..+++.+...|++
T Consensus       292 ~~~~g~~~~A~~~l~~~l~~------~P~~~~~~---------~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~  355 (389)
T PRK11788        292 LEEQEGPEAAQALLREQLRR------HPSLRGFH---------RLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY  355 (389)
T ss_pred             HHHhCCHHHHHHHHHHHHHh------CcCHHHHH---------HHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence            88899999999999999997      55433222         1111111 1  222 224566777888888777775

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.53  E-value=1.7e-11  Score=142.93  Aligned_cols=292  Identities=12%  Similarity=0.078  Sum_probs=215.9

Q ss_pred             CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhhCCChHHHH
Q 001619           53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYS----VDVWFHYCSLSMSTFEDPNDVR  128 (1043)
Q Consensus        53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s----~~LWl~Y~~~~~~~~~~~e~ar  128 (1043)
                      ++.+.+...|+++++.+|.+..+|...+.+....|++++|..+|++++...+..    ...|..++...... ++++.|.
T Consensus        49 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~-g~~~~A~  127 (389)
T PRK11788         49 EQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA-GLLDRAE  127 (389)
T ss_pred             CChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC-CCHHHHH
Confidence            788999999999999999999999999999999999999999999999863222    25677777777777 8999999


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCccHHHHHHHH-HHHHHHHHHhhhhhhhhhHHH
Q 001619          129 RLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSF-KKLAGAWKEELECESDSAMEF  207 (1043)
Q Consensus       129 ~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~l~~~~~~y-~~~~~~~~e~l~~~~~~~~~~  207 (1043)
                      .+|++++..-+.   ....|..++......|+++.|..+|.++++............+ ......               
T Consensus       128 ~~~~~~l~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~---------------  189 (389)
T PRK11788        128 ELFLQLVDEGDF---AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ---------------  189 (389)
T ss_pred             HHHHHHHcCCcc---hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH---------------
Confidence            999999986544   5678888888888899999999999999875322211100000 000000               


Q ss_pred             HHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChH
Q 001619          208 QSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDI  287 (1043)
Q Consensus       208 ~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~  287 (1043)
                                                                       +.+..+...+...|+++++        .+|.
T Consensus       190 -------------------------------------------------~~~~~~~~~A~~~~~~al~--------~~p~  212 (389)
T PRK11788        190 -------------------------------------------------ALARGDLDAARALLKKALA--------ADPQ  212 (389)
T ss_pred             -------------------------------------------------HHhCCCHHHHHHHHHHHHh--------HCcC
Confidence                                                             0000011112223333433        2355


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCc-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHH
Q 001619          288 QLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADY-PEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNAR  366 (1043)
Q Consensus       288 ~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~-~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~  366 (1043)
                      ....|..++..+...|+++++..+|++++...|.. ..+|...+..+...|++++|...|++++.. .++.+ ++...+.
T Consensus       213 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-~p~~~-~~~~la~  290 (389)
T PRK11788        213 CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-YPGAD-LLLALAQ  290 (389)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCch-HHHHHHH
Confidence            66788888888888999999999999999876655 567888899999999999999999999987 45554 5588899


Q ss_pred             HHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHH
Q 001619          367 YKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMER---RLGNFVAACDTYKEALETAA  424 (1043)
Q Consensus       367 ~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~---~~G~~e~Ar~lyekale~~~  424 (1043)
                      +..+.|++++|+.+|++++.. .|+...+. .++....   ..|+.+++..++++.++..+
T Consensus       291 ~~~~~g~~~~A~~~l~~~l~~-~P~~~~~~-~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~  349 (389)
T PRK11788        291 LLEEQEGPEAAQALLREQLRR-HPSLRGFH-RLLDYHLAEAEEGRAKESLLLLRDLVGEQL  349 (389)
T ss_pred             HHHHhCCHHHHHHHHHHHHHh-CcCHHHHH-HHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence            999999999999999999864 44443332 2222222   25688899999998887654

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=99.50  E-value=3.4e-13  Score=149.66  Aligned_cols=131  Identities=15%  Similarity=0.161  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Q 001619          291 NWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMES-KGGREIASYALDRATQIFLKRLPVIHLFNARYKE  369 (1043)
Q Consensus       291 ~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~-~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~  369 (1043)
                      +|..|+.|.++.++.+.+|.+|++|+........+|+.+|.++.. .++.+.|++||++|++. .+..+.+|+.|++|+.
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~   81 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI   81 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence            799999999999999999999999997766678999999999888 45677799999999998 5567889999999999


Q ss_pred             HhCCHHHHHHHHHhhhhCCChh--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619          370 QIGDTSAARAAFPESYIDSDSR--FIEKVTFKANMERRLGNFVAACDTYKEALET  422 (1043)
Q Consensus       370 ~~g~~d~Ar~ll~ral~~~~~~--~~~lw~~~a~lE~~~G~~e~Ar~lyekale~  422 (1043)
                      ..|+++.||.+|++++......  ...+|.+|++||.+.|+++.++++++++.+.
T Consensus        82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9999999999999999754333  3469999999999999999999999999997

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.50  E-value=1.8e-10  Score=137.22  Aligned_cols=367  Identities=15%  Similarity=0.089  Sum_probs=243.1

Q ss_pred             ccHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001619           21 FGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAV  100 (1043)
Q Consensus        21 ~~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL  100 (1043)
                      +-...+.++|+.+|....+|..+...++..  |++++....+-.|--.+|.+.++|+.++++-.+.|+++.|+-+|.||+
T Consensus       157 eA~~i~~EvIkqdp~~~~ay~tL~~IyEqr--Gd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI  234 (895)
T KOG2076|consen  157 EAEEILMEVIKQDPRNPIAYYTLGEIYEQR--GDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAI  234 (895)
T ss_pred             HHHHHHHHHHHhCccchhhHHHHHHHHHHc--ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            345678999999999999999999988887  899998888888888999999999999999999999999999999999


Q ss_pred             HhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCC-C--CcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcC---
Q 001619          101 QSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKD-Y--LCHTMWDKYIEFEISQQRWSSLAQIFVQTLRF---  174 (1043)
Q Consensus       101 ~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~-~--~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~---  174 (1043)
                      ...|..+++-..++.++.++ |+...|-..|.+++..+|.. +  ....||...--|.+ .+..+.|.+++..++..   
T Consensus       235 ~~~p~n~~~~~ers~L~~~~-G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~-~~~~e~a~~~le~~~s~~~~  312 (895)
T KOG2076|consen  235 QANPSNWELIYERSSLYQKT-GDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT-HNERERAAKALEGALSKEKD  312 (895)
T ss_pred             hcCCcchHHHHHHHHHHHHh-ChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhhccc
Confidence            99999999999999999888 89999999999999999821 1  02356654444443 34448888888888762   


Q ss_pred             --CCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHH-------HHhhcCCchhhH-HHH
Q 001619          175 --PSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSV-------IKDLLDPSVDLV-RSK  244 (1043)
Q Consensus       175 --p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~-------i~~~~~~~~~~e-~ar  244 (1043)
                        ...++..+...|.... .++.++.        .+........    -+|...+-+       ..-+.....+.. ..+
T Consensus       313 ~~~~ed~ni~ael~l~~~-q~d~~~~--------~i~~~~~r~~----e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~  379 (895)
T KOG2076|consen  313 EASLEDLNILAELFLKNK-QSDKALM--------KIVDDRNRES----EKDDSEWDTDERRREEPNALCEVGKELSYDLR  379 (895)
T ss_pred             cccccHHHHHHHHHHHhH-HHHHhhH--------HHHHHhcccc----CCChhhhhhhhhccccccccccCCCCCCccch
Confidence              1122222222222211 1111111        1111100000    001000000       000000000000 000


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhcc-CCCcH
Q 001619          245 AIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIP-CADYP  323 (1043)
Q Consensus       245 ~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~-~~~~~  323 (1043)
                      .++-...   ...-+..+....+..|-  ...    +. .....++++...++.+...|.+..|..+|..++.. +-...
T Consensus       380 v~rl~ic---L~~L~~~e~~e~ll~~l--~~~----n~-~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~  449 (895)
T KOG2076|consen  380 VIRLMIC---LVHLKERELLEALLHFL--VED----NV-WVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNA  449 (895)
T ss_pred             hHhHhhh---hhcccccchHHHHHHHH--HHh----cC-ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccch
Confidence            0000000   00001111111111110  000    00 12356788999999999999999999999999974 34457


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCC---------hhhHH
Q 001619          324 EFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSD---------SRFIE  394 (1043)
Q Consensus       324 ~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~---------~~~~~  394 (1043)
                      .+|...|..|...|..+.|...|++++.. .|++-++.+..+.+..+.|+.|+|.++++.... +.         ..-.+
T Consensus       450 ~vw~~~a~c~~~l~e~e~A~e~y~kvl~~-~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~-~D~~~~e~~a~~~e~r  527 (895)
T KOG2076|consen  450 FVWYKLARCYMELGEYEEAIEFYEKVLIL-APDNLDARITLASLYQQLGNHEKALETLEQIIN-PDGRNAEACAWEPERR  527 (895)
T ss_pred             hhhHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccC-CCccchhhccccHHHH
Confidence            89999999999999999999999999987 778888999999999999999999999988542 11         12345


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHH
Q 001619          395 KVTFKANMERRLGNFVAACDTY  416 (1043)
Q Consensus       395 lw~~~a~lE~~~G~~e~Ar~ly  416 (1043)
                      +-..++++....|..+.-..+-
T Consensus       528 i~~~r~d~l~~~gk~E~fi~t~  549 (895)
T KOG2076|consen  528 ILAHRCDILFQVGKREEFINTA  549 (895)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHH
Confidence            6677788888888877644433

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.47  E-value=1.7e-13  Score=152.58  Aligned_cols=269  Identities=18%  Similarity=0.215  Sum_probs=96.7

Q ss_pred             hCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 001619           32 EGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEF--PLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDV  109 (1043)
Q Consensus        32 ~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~--P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~L  109 (1043)
                      ..|.  +..++++..+-..  ++.+++..++++++...  |.+..+|..++.+....++++.|+.+|++.+...+.++..
T Consensus         5 ~~~~--~~~l~~A~~~~~~--~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~   80 (280)
T PF13429_consen    5 FGPS--EEALRLARLLYQR--GDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQD   80 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccc--ccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3444  4555666655555  78889999998777665  8899999999999888899999999999999998888888


Q ss_pred             HHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCc-cHHHHHHHHHH
Q 001619          110 WFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSK-KLHHYYDSFKK  188 (1043)
Q Consensus       110 Wl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~-~l~~~~~~y~~  188 (1043)
                      ...++.+ ... +++++|.++++++.+..+    +..+|..++......++++.+..+++++...+.. .-...|..+- 
T Consensus        81 ~~~l~~l-~~~-~~~~~A~~~~~~~~~~~~----~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a-  153 (280)
T PF13429_consen   81 YERLIQL-LQD-GDPEEALKLAEKAYERDG----DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALA-  153 (280)
T ss_dssp             -------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHH-
T ss_pred             ccccccc-ccc-cccccccccccccccccc----ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHH-
Confidence            8888888 444 788889999888877553    4578888888888888999999999887643211 1011111000 


Q ss_pred             HHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001619          189 LAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKIN  268 (1043)
Q Consensus       189 ~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~  268 (1043)
                                                                                        .++.+.++...++.
T Consensus       154 ------------------------------------------------------------------~~~~~~G~~~~A~~  167 (280)
T PF13429_consen  154 ------------------------------------------------------------------EIYEQLGDPDKALR  167 (280)
T ss_dssp             ------------------------------------------------------------------HHHHHCCHHHHHHH
T ss_pred             ------------------------------------------------------------------HHHHHcCCHHHHHH
Confidence                                                                              01111122223344


Q ss_pred             HHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001619          269 CFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDR  348 (1043)
Q Consensus       269 ~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~iler  348 (1043)
                      .|+++++        .+|.+..++..++-++...|+.++++.++++.....+..+.+|..++..+...|+.++|...|++
T Consensus       168 ~~~~al~--------~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~  239 (280)
T PF13429_consen  168 DYRKALE--------LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEK  239 (280)
T ss_dssp             HHHHHHH--------H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             HHHHHHH--------cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccc
Confidence            5566665        45888889988888888888999888888888877788888999999999999999999999999


Q ss_pred             HHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhh
Q 001619          349 ATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYI  386 (1043)
Q Consensus       349 A~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~  386 (1043)
                      +++. .|+++.+...+|+.....|..++|..++.++..
T Consensus       240 ~~~~-~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  240 ALKL-NPDDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             HHHH-STT-HHHHHHHHHHHT-----------------
T ss_pred             cccc-ccccccccccccccccccccccccccccccccc
Confidence            9986 788888999999999999999999999988864

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.45  E-value=3.3e-10  Score=126.65  Aligned_cols=424  Identities=13%  Similarity=0.057  Sum_probs=255.8

Q ss_pred             CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHH
Q 001619           53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFK  132 (1043)
Q Consensus        53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lfe  132 (1043)
                      +.++.+.+.|..|+...|+-.-.+-..+-.....|+++++.+-.-+||++.|..+...+.-++-.... ++.+  ..+|+
T Consensus       129 kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~l-g~~~--eal~D  205 (606)
T KOG0547|consen  129 KKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQL-GKFD--EALFD  205 (606)
T ss_pred             ccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhh-ccHH--HHHHh
Confidence            67889999999999999997777777777777889999999999999999997777766666554433 4443  33555


Q ss_pred             HHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHH-HH-hcCCCcc-HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 001619          133 RALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFV-QT-LRFPSKK-LHHYYDSFKKLAGAWKEELECESDSAMEFQS  209 (1043)
Q Consensus       133 rAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~-ra-L~~p~~~-l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~  209 (1043)
                      -.+.++-.+|....+-...-+.+...+ ...+.+.|. +. =.+|... +..++..|.   ............++-+.+.
T Consensus       206 ~tv~ci~~~F~n~s~~~~~eR~Lkk~a-~~ka~e~~k~nr~p~lPS~~fi~syf~sF~---~~~~~~~~~~~~ksDa~l~  281 (606)
T KOG0547|consen  206 VTVLCILEGFQNASIEPMAERVLKKQA-MKKAKEKLKENRPPVLPSATFIASYFGSFH---ADPKPLFDNKSDKSDAALA  281 (606)
T ss_pred             hhHHHHhhhcccchhHHHHHHHHHHHH-HHHHHHhhcccCCCCCCcHHHHHHHHhhcc---ccccccccCCCccchhhHH
Confidence            555555444433333333333333222 122222222 11 1123221 111111111   1100000000000000000


Q ss_pred             ---HhhhccccccCccchhhhH--HHHhhcC-------CchhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcc
Q 001619          210 ---ELVLEGEVPAYYKDDETSS--VIKDLLD-------PSVDLVRSKAIQKYRFIGEQIYKE-ASQLDEKINCFENLIRR  276 (1043)
Q Consensus       210 ---e~i~~~~l~~~~~~~e~~~--~i~~~~~-------~~~~~e~ar~i~~~~~~~~~~y~~-a~~~~~~~~~fE~~i~r  276 (1043)
                         +.+..+. ...|......+  ....+..       +...---|+++.-     ..+|.= ..........|..+|. 
T Consensus       282 ~~l~~l~~~~-~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~-----~gtF~fL~g~~~~a~~d~~~~I~-  354 (606)
T KOG0547|consen  282 EALEALEKGL-EEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLL-----RGTFHFLKGDSLGAQEDFDAAIK-  354 (606)
T ss_pred             HHHHHHHhhC-chhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHH-----hhhhhhhcCCchhhhhhHHHHHh-
Confidence               0000000 00000000000  0000000       0000000111110     001100 0011122334444443 


Q ss_pred             cCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcc
Q 001619          277 PYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKR  356 (1043)
Q Consensus       277 ~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~  356 (1043)
                             ++|....++++++..+....+.++-...|.+|...+|.++++++..+..+...++++.|..-|++|+.+ .|.
T Consensus       355 -------l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L-~pe  426 (606)
T KOG0547|consen  355 -------LDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL-DPE  426 (606)
T ss_pred             -------cCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc-Chh
Confidence                   556667778888888877788899999999999999999999999999988899999999999999987 554


Q ss_pred             cchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHH
Q 001619          357 LPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLY  436 (1043)
Q Consensus       357 ~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~  436 (1043)
                      +.--++..+-.+.|.+.++.+...|+.+.+. .|.+.+++-.++.+..-.+.|+.|.+.|++||++..........+..+
T Consensus       427 ~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~pl  505 (606)
T KOG0547|consen  427 NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPL  505 (606)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhh
Confidence            4444555566678899999999999999864 577889999999999999999999999999999843322222234444


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 001619          437 VQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKL  516 (1043)
Q Consensus       437 ~~~ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~  516 (1043)
                      +..|...+. |.         ..+.++..|+++|++..|..         +..+.....|+-..|+++.|..+++++...
T Consensus       506 V~Ka~l~~q-wk---------~d~~~a~~Ll~KA~e~Dpkc---------e~A~~tlaq~~lQ~~~i~eAielFEksa~l  566 (606)
T KOG0547|consen  506 VHKALLVLQ-WK---------EDINQAENLLRKAIELDPKC---------EQAYETLAQFELQRGKIDEAIELFEKSAQL  566 (606)
T ss_pred             hhhhHhhhc-hh---------hhHHHHHHHHHHHHccCchH---------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            444443332 22         23778999999999998886         455667788888889999999999998877


Q ss_pred             CC
Q 001619          517 FP  518 (1043)
Q Consensus       517 ~p  518 (1043)
                      -.
T Consensus       567 Ar  568 (606)
T KOG0547|consen  567 AR  568 (606)
T ss_pred             HH
Confidence            43

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.45  E-value=1.4e-09  Score=139.39  Aligned_cols=414  Identities=12%  Similarity=0.062  Sum_probs=265.9

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 001619           33 GSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLC--YGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVW  110 (1043)
Q Consensus        33 nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s--~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LW  110 (1043)
                      .+.+...++.++..+-+.  +.+..+..+|+.+.+.....  .-++..++....+.|.+++|..+|+....   .+...|
T Consensus       366 ~~~~~~~~~~~y~~l~r~--G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---pd~~Ty  440 (1060)
T PLN03218        366 GKRKSPEYIDAYNRLLRD--GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---PTLSTF  440 (1060)
T ss_pred             CCCCchHHHHHHHHHHHC--cCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---CCHHHH
Confidence            355677777777766665  88999999999998875433  33444556666777889999988876654   367788


Q ss_pred             HHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCc-cHHHHHHHHHH-
Q 001619          111 FHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSK-KLHHYYDSFKK-  188 (1043)
Q Consensus       111 l~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~-~l~~~~~~y~~-  188 (1043)
                      ...++.+.+. ++++.|+++|++..+. |... +...|...+....+.|.++.|.++|++..+.... +.. .|..... 
T Consensus       441 n~LL~a~~k~-g~~e~A~~lf~~M~~~-Gl~p-D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdvv-TynaLI~g  516 (1060)
T PLN03218        441 NMLMSVCASS-QDIDGALRVLRLVQEA-GLKA-DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVH-TFGALIDG  516 (1060)
T ss_pred             HHHHHHHHhC-cCHHHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Confidence            8888887777 8999999999987763 4433 5678999999998999999999999998753111 221 2221111 


Q ss_pred             HH--HHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001619          189 LA--GAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEK  266 (1043)
Q Consensus       189 ~~--~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~  266 (1043)
                      +.  +.++++        .+.+.++...+..+    +...+..+-..                       |-+......+
T Consensus       517 y~k~G~~eeA--------l~lf~~M~~~Gv~P----D~vTYnsLI~a-----------------------~~k~G~~deA  561 (1060)
T PLN03218        517 CARAGQVAKA--------FGAYGIMRSKNVKP----DRVVFNALISA-----------------------CGQSGAVDRA  561 (1060)
T ss_pred             HHHCcCHHHH--------HHHHHHHHHcCCCC----CHHHHHHHHHH-----------------------HHHCCCHHHH
Confidence            11  111111        11122221111100    11111111101                       1111222223


Q ss_pred             HHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccC-CCcHHHHHHHHHHHHHcCChHHHHHH
Q 001619          267 INCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPC-ADYPEFWMRYVDFMESKGGREIASYA  345 (1043)
Q Consensus       267 ~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~-~~~~~LWl~yAk~~e~~g~~e~Ar~i  345 (1043)
                      ...|++.....    ....| +...|...+..+-+.|++++|..+|++..... ......|...+..+-+.|++++|..+
T Consensus       562 ~~lf~eM~~~~----~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~l  636 (1060)
T PLN03218        562 FDVLAEMKAET----HPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSI  636 (1060)
T ss_pred             HHHHHHHHHhc----CCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Confidence            33333332110    01223 34578888888888999999999999998753 45668899999999999999999999


Q ss_pred             HHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 001619          346 LDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAE  425 (1043)
Q Consensus       346 lerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~  425 (1043)
                      |++....-..-+...|...+....+.|++++|..+|..+.+........+|...++...+.|++++|+++|+++.+..  
T Consensus       637 f~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g--  714 (1060)
T PLN03218        637 YDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK--  714 (1060)
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--
Confidence            998876422222346667777788899999999999998864333335678888888888999999999999887641  


Q ss_pred             hccCCccHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhc--CCCccccCChhhHHHHHHHHHHHHHHcCCH
Q 001619          426 QRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYS--RPDVLKVFSLEDVEDISSLYLQFLDLCGTI  503 (1043)
Q Consensus       426 ~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~~--~p~~~~~l~~~~~~~l~~lwl~fee~~G~~  503 (1043)
                        ..|. ..        .|..++....+.|.   ++.|..+|++....  .|+.          ..|...+......|.+
T Consensus       715 --~~Pd-vv--------tyN~LI~gy~k~G~---~eeAlelf~eM~~~Gi~Pd~----------~Ty~sLL~a~~k~G~l  770 (1060)
T PLN03218        715 --LRPT-VS--------TMNALITALCEGNQ---LPKALEVLSEMKRLGLCPNT----------ITYSILLVASERKDDA  770 (1060)
T ss_pred             --CCCC-HH--------HHHHHHHHHHHCCC---HHHHHHHHHHHHHcCCCCCH----------HHHHHHHHHHHHCCCH
Confidence              1221 11        23333443334443   67888999887653  2332          3445555666678999


Q ss_pred             HHHHHHHHHHHhhCCCCc
Q 001619          504 HDIRNAWNQHIKLFPHTV  521 (1043)
Q Consensus       504 ~~a~~~~~ra~k~~p~~~  521 (1043)
                      +.|+.++.++.+.-...+
T Consensus       771 e~A~~l~~~M~k~Gi~pd  788 (1060)
T PLN03218        771 DVGLDLLSQAKEDGIKPN  788 (1060)
T ss_pred             HHHHHHHHHHHHcCCCCC
Confidence            999999999988654433

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.45  E-value=2.9e-10  Score=142.92  Aligned_cols=428  Identities=13%  Similarity=0.017  Sum_probs=230.2

Q ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCHHHHHHH
Q 001619           37 FDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEF--PLCYGYWRKYADHKARLCSIDKVVEVFERAVQS-ATYSVDVWFHY  113 (1043)
Q Consensus        37 ~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~--P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~-~P~s~~LWl~Y  113 (1043)
                      ...|...|..+...  +....+..+|+.+....  ..+...|..++....+.++++.++.++...+.. +..++.+|...
T Consensus        87 ~~~~~~~i~~l~~~--g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L  164 (697)
T PLN03081         87 GVSLCSQIEKLVAC--GRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV  164 (697)
T ss_pred             ceeHHHHHHHHHcC--CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence            34799998877766  88999999999988754  345677888888888889999999999988875 23367888888


Q ss_pred             HHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Q 001619          114 CSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAW  193 (1043)
Q Consensus       114 ~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~l~~~~~~y~~~~~~~  193 (1043)
                      +.++.+. +.++.|+++|++...  +    +...|...+.-..+.|.++.|.++|++.+......-...|..........
T Consensus       165 i~~y~k~-g~~~~A~~lf~~m~~--~----~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~  237 (697)
T PLN03081        165 LLMHVKC-GMLIDARRLFDEMPE--R----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL  237 (697)
T ss_pred             HHHHhcC-CCHHHHHHHHhcCCC--C----CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC
Confidence            8888887 899999999997643  1    34579999988888999999999999997532211111111111111100


Q ss_pred             HHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHH--------HHHHHHHHHHHHHH
Q 001619          194 KEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRF--------IGEQIYKEASQLDE  265 (1043)
Q Consensus       194 ~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~--------~~~~~y~~a~~~~~  265 (1043)
                      .. +     ...+.+...+.+..+.   .+......+-+.+-..+.++.|+.+++.+.        ..-..|-+......
T Consensus       238 ~~-~-----~~~~~l~~~~~~~g~~---~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~e  308 (697)
T PLN03081        238 GS-A-----RAGQQLHCCVLKTGVV---GDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEE  308 (697)
T ss_pred             Cc-H-----HHHHHHHHHHHHhCCC---ccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHH
Confidence            00 0     0011121111111110   011112222222333444444444433210        00011111222222


Q ss_pred             HHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHHcCChHHHHH
Q 001619          266 KINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIP-CADYPEFWMRYVDFMESKGGREIASY  344 (1043)
Q Consensus       266 ~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~-~~~~~~LWl~yAk~~e~~g~~e~Ar~  344 (1043)
                      +...|++..+..      ..|+ ...|...+..+.+.|.++.+..+|+.++.. ++....++..++..|.+.|++++|+.
T Consensus       309 A~~lf~~M~~~g------~~pd-~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~  381 (697)
T PLN03081        309 ALCLYYEMRDSG------VSID-QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARN  381 (697)
T ss_pred             HHHHHHHHHHcC------CCCC-HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHH
Confidence            223333222110      1111 223444444444455555555555555543 22333445555555555555555555


Q ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhC-CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001619          345 ALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYID-SDSRFIEKVTFKANMERRLGNFVAACDTYKEALETA  423 (1043)
Q Consensus       345 ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~-~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~  423 (1043)
                      +|++..+   + +...|-..+.-..++|++++|.++|++.... ..|+ ...|...+.--.+.|.+++|+.+|+.+.+..
T Consensus       382 vf~~m~~---~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~  456 (697)
T PLN03081        382 VFDRMPR---K-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENH  456 (697)
T ss_pred             HHHhCCC---C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc
Confidence            5554321   1 2224444445555555555555555555432 1122 2233333333444455555555555555431


Q ss_pred             HhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCH
Q 001619          424 AEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTI  503 (1043)
Q Consensus       424 ~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~  503 (1043)
                      ..   .   |..      ..|...+....+.|.   ++.|..+|+++- ..|+          ..+|...+.....+|+.
T Consensus       457 g~---~---p~~------~~y~~li~~l~r~G~---~~eA~~~~~~~~-~~p~----------~~~~~~Ll~a~~~~g~~  510 (697)
T PLN03081        457 RI---K---PRA------MHYACMIELLGREGL---LDEAYAMIRRAP-FKPT----------VNMWAALLTACRIHKNL  510 (697)
T ss_pred             CC---C---CCc------cchHhHHHHHHhcCC---HHHHHHHHHHCC-CCCC----------HHHHHHHHHHHHHcCCc
Confidence            10   1   100      012333444444443   678888887642 1222          24577777777889999


Q ss_pred             HHHHHHHHHHHhhCCCC
Q 001619          504 HDIRNAWNQHIKLFPHT  520 (1043)
Q Consensus       504 ~~a~~~~~ra~k~~p~~  520 (1043)
                      +.+..++++.++..|..
T Consensus       511 ~~a~~~~~~l~~~~p~~  527 (697)
T PLN03081        511 ELGRLAAEKLYGMGPEK  527 (697)
T ss_pred             HHHHHHHHHHhCCCCCC
Confidence            99999999998877753

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.44  E-value=7.4e-11  Score=150.06  Aligned_cols=281  Identities=9%  Similarity=-0.047  Sum_probs=218.8

Q ss_pred             HHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHH
Q 001619           56 EMIGLVYDSFLAEFPL--CYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKR  133 (1043)
Q Consensus        56 ~~~r~vyeraL~~~P~--s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lfer  133 (1043)
                      ..+...+.+++...|.  ....|..++..... +.+++|..+|.+++...|.+.. .+.++..+... ++.+.|...|++
T Consensus       458 ~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~-~L~lA~al~~~-Gr~eeAi~~~rk  534 (987)
T PRK09782        458 ADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQ-HRAVAYQAYQV-EDYATALAAWQK  534 (987)
T ss_pred             hhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHH-HHHHHHHHHHC-CCHHHHHHHHHH
Confidence            3456677888888888  89999999988776 7888899999999999987643 44444444455 899999999999


Q ss_pred             HHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhh
Q 001619          134 ALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVL  213 (1043)
Q Consensus       134 AL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~  213 (1043)
                      ++..-+.    ...|..++......|+.+.|...|+++++..+......+.    ....    .              . 
T Consensus       535 a~~~~p~----~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~----La~~----l--------------~-  587 (987)
T PRK09782        535 ISLHDMS----NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWW----LHAQ----R--------------Y-  587 (987)
T ss_pred             HhccCCC----cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHH----HHHH----H--------------H-
Confidence            8665332    3457777777788899999999999998764332111110    0000    0              0 


Q ss_pred             ccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHH
Q 001619          214 EGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWH  293 (1043)
Q Consensus       214 ~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~  293 (1043)
                                            ..+                       ....+...|++++.        .+|+ ...|.
T Consensus       588 ----------------------~~G-----------------------r~~eAl~~~~~AL~--------l~P~-~~a~~  613 (987)
T PRK09782        588 ----------------------IPG-----------------------QPELALNDLTRSLN--------IAPS-ANAYV  613 (987)
T ss_pred             ----------------------hCC-----------------------CHHHHHHHHHHHHH--------hCCC-HHHHH
Confidence                                  000                       01122333444553        4565 78899


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCC
Q 001619          294 DYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGD  373 (1043)
Q Consensus       294 ~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~  373 (1043)
                      .++..+.+.|+++.++..|++|+...|+...+|..++..+...|+.++|+.+|++|++. .|+.+.+|...+......|+
T Consensus       614 ~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-~P~~~~a~~nLA~al~~lGd  692 (987)
T PRK09782        614 ARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG-LPDDPALIRQLAYVNQRLDD  692 (987)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCC
Confidence            99999999999999999999999999999999999999999999999999999999987 77888999999999999999


Q ss_pred             HHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619          374 TSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET  422 (1043)
Q Consensus       374 ~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~  422 (1043)
                      +++|+..|++++. ..|....+-..+..++.+.++++++.+.|.+++..
T Consensus       693 ~~eA~~~l~~Al~-l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~  740 (987)
T PRK09782        693 MAATQHYARLVID-DIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF  740 (987)
T ss_pred             HHHHHHHHHHHHh-cCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999995 46777788889999999889999999999998885

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.42  E-value=4.2e-09  Score=135.13  Aligned_cols=388  Identities=12%  Similarity=0.065  Sum_probs=250.1

Q ss_pred             HHHHHHHhCC--CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001619           25 GLEEFIAEGS--LDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQS  102 (1043)
Q Consensus        25 ~le~~i~~nP--~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~  102 (1043)
                      .+++....+.  .+.-.+..++..+...  +.+..+..+|+....  | +...|...+....+.++++.|+.+|++..+.
T Consensus       392 Lfd~M~~~gvv~~~~v~~~~li~~~~~~--g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~  466 (1060)
T PLN03218        392 LLEDMEKRGLLDMDKIYHAKFFKACKKQ--RAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEA  466 (1060)
T ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHHHC--CCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc
Confidence            3444444443  3333444566666665  778888888877764  4 5778889999888999999999999998886


Q ss_pred             c-CCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCccHHH
Q 001619          103 A-TYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHH  181 (1043)
Q Consensus       103 ~-P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~l~~  181 (1043)
                      - ..++..|...+..+.+. ++++.|+++|++..+. +... +...|...+....+.|+++.|.++|.+........-..
T Consensus       467 Gl~pD~~tynsLI~~y~k~-G~vd~A~~vf~eM~~~-Gv~P-dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~v  543 (1060)
T PLN03218        467 GLKADCKLYTTLISTCAKS-GKVDAMFEVFHEMVNA-GVEA-NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRV  543 (1060)
T ss_pred             CCCCCHHHHHHHHHHHHhC-cCHHHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHH
Confidence            3 44778899988888888 8999999999998763 3332 46789999999999999999999999986532111111


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhc-cccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHH
Q 001619          182 YYDSFKKLAGAWKEELECESDSAMEFQSELVLE-GEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEA  260 (1043)
Q Consensus       182 ~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~-~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a  260 (1043)
                      .|.   ..+..+...-  ....+.+.+.++... ..+.   .+...+..+-+                       .|-+.
T Consensus       544 TYn---sLI~a~~k~G--~~deA~~lf~eM~~~~~gi~---PD~vTynaLI~-----------------------ay~k~  592 (1060)
T PLN03218        544 VFN---ALISACGQSG--AVDRAFDVLAEMKAETHPID---PDHITVGALMK-----------------------ACANA  592 (1060)
T ss_pred             HHH---HHHHHHHHCC--CHHHHHHHHHHHHHhcCCCC---CcHHHHHHHHH-----------------------HHHHC
Confidence            222   2222111000  000111112222110 0000   01111111111                       12222


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHHcCCh
Q 001619          261 SQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIP-CADYPEFWMRYVDFMESKGGR  339 (1043)
Q Consensus       261 ~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~-~~~~~~LWl~yAk~~e~~g~~  339 (1043)
                      .....++..|+...++.      . +.+...|...+..+.+.|+++.|..+|++.... +.-....|..++..+.+.|++
T Consensus       593 G~ldeA~elf~~M~e~g------i-~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~  665 (1060)
T PLN03218        593 GQVDRAKEVYQMIHEYN------I-KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDL  665 (1060)
T ss_pred             CCHHHHHHHHHHHHHcC------C-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Confidence            23333344444444321      1 224568999999999999999999999999865 222356788889999999999


Q ss_pred             HHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001619          340 EIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEA  419 (1043)
Q Consensus       340 e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyeka  419 (1043)
                      ++|..+|+++.+.-.+-...+|...+....+.|++++|.++|+.............|-..+....+.|++++|.++|+++
T Consensus       666 eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM  745 (1060)
T PLN03218        666 DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM  745 (1060)
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            99999999988753333456788888888999999999999998864322223567888888888999999999999998


Q ss_pred             HHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcC
Q 001619          420 LETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSR  474 (1043)
Q Consensus       420 le~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~~~  474 (1043)
                      ....    ..|. ..        .|..++.-..+.|.   ++.|+.+|+.++...
T Consensus       746 ~~~G----i~Pd-~~--------Ty~sLL~a~~k~G~---le~A~~l~~~M~k~G  784 (1060)
T PLN03218        746 KRLG----LCPN-TI--------TYSILLVASERKDD---ADVGLDLLSQAKEDG  784 (1060)
T ss_pred             HHcC----CCCC-HH--------HHHHHHHHHHHCCC---HHHHHHHHHHHHHcC
Confidence            7642    1221 11        12222222223343   677888888887643

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=99.42  E-value=3.9e-10  Score=133.15  Aligned_cols=375  Identities=11%  Similarity=0.131  Sum_probs=227.3

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhh--CCChHHHHHHHHH
Q 001619           56 EMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMST--FEDPNDVRRLFKR  133 (1043)
Q Consensus        56 ~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~--~~~~e~ar~lfer  133 (1043)
                      +.....++.-+..+++++..-..||.+..+.|++++.+..=..+.+..|.++-||+.|+.-+...  .++.+.+..+|++
T Consensus        96 ~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ek  175 (881)
T KOG0128|consen   96 NQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEK  175 (881)
T ss_pred             hhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHH
Confidence            33444566667777888888788888888999999999999999999999999999999876543  2567778999999


Q ss_pred             HHHhcCCCCCcHHHHHHHHHHHHHh-------hhhhhHHHHHHHHhcCCC---ccHHHHHHHHHHHHHHHHHhhhhhhhh
Q 001619          134 ALSFVGKDYLCHTMWDKYIEFEISQ-------QRWSSLAQIFVQTLRFPS---KKLHHYYDSFKKLAGAWKEELECESDS  203 (1043)
Q Consensus       134 AL~~lp~~~~s~~IW~~yi~fe~~~-------~~~e~a~~iy~raL~~p~---~~l~~~~~~y~~~~~~~~e~l~~~~~~  203 (1043)
                      ||.    ++.+..||..|+.|....       ++++..|.+|.|+|..-.   ..-..+|..|.+|...+-....     
T Consensus       176 al~----dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~-----  246 (881)
T KOG0128|consen  176 ALG----DYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVE-----  246 (881)
T ss_pred             Hhc----ccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHH-----
Confidence            875    455789999999998764       457889999999986311   1223444445454443211000     


Q ss_pred             hHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 001619          204 AMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKP  283 (1043)
Q Consensus       204 ~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~  283 (1043)
                       -+.+..+..+. +...+                                        +....                 
T Consensus       247 -~~qv~a~~~~e-l~~~~----------------------------------------D~~~~-----------------  267 (881)
T KOG0128|consen  247 -QRQVIALFVRE-LKQPL----------------------------------------DEDTR-----------------  267 (881)
T ss_pred             -HHHHHHHHHHH-Hhccc----------------------------------------hhhhh-----------------
Confidence             00010000000 00000                                        00000                 


Q ss_pred             CChHHHHHHH--HHHHHHHH-----cCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcc
Q 001619          284 LDDIQLKNWH--DYLSFAEK-----QGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKR  356 (1043)
Q Consensus       284 ~~p~~~~~W~--~yi~~e~~-----~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~  356 (1043)
                        -..+..|.  -+++-+..     ..+....+..|++-+...+.....|+.|++|+-..|+.-....+++|++.- +..
T Consensus       268 --~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E-~~~  344 (881)
T KOG0128|consen  268 --GWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAE-MVL  344 (881)
T ss_pred             --HHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHh-ccc
Confidence              01111111  11111110     112334556777777777777889999999999999998888999999876 334


Q ss_pred             cchHHHHHHHHHH-HhCCHHHHHHHHHhhhhCCChhhHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHH
Q 001619          357 LPVIHLFNARYKE-QIGDTSAARAAFPESYIDSDSRFIEKVTFKA-NMERRLGNFVAACDTYKEALETAAEQRKFHTLPL  434 (1043)
Q Consensus       357 ~p~iwl~~A~~E~-~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a-~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~  434 (1043)
                      .++.|+.|.-+.- .++-...+..++-+++.. +|-...+|.+|. .|||...........+++++...+         .
T Consensus       345 ~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~-cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~---------~  414 (881)
T KOG0128|consen  345 DRALWIGYGVYLDTELKVPQRGVSVHPRAVRS-CPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTV---------E  414 (881)
T ss_pred             cHHHHhhhhhhcccccccccccccccchhhcC-CchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHH---------H
Confidence            5789999876653 355556677788888754 566678899885 333333334444555566665421         1


Q ss_pred             HHHHHHH------------------HHH----------------------HHHHHHHHHhCCCchHHHHHHHHHHHhhcC
Q 001619          435 LYVQFSR------------------LTY----------------------TELIKFTMVHGGRSHISIVDAVISNALYSR  474 (1043)
Q Consensus       435 l~~~~ar------------------~~~----------------------~~~~~fe~~~g~~~~leraR~l~erAl~~~  474 (1043)
                      ++..|+.                  ..|                      ..|+.+|...++  +++.+|-|-...+...
T Consensus       415 l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~--nmd~~R~iWn~imty~  492 (881)
T KOG0128|consen  415 LHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLK--NMDKAREIWNFIMTYG  492 (881)
T ss_pred             HHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhh--chhhhhHhhhccccCC
Confidence            2222210                  001                      234444444332  2344555444333210


Q ss_pred             CCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Q 001619          475 PDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTV  521 (1043)
Q Consensus       475 p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~~p~~~  521 (1043)
                              .....-.|.-|+.+|+.+|+..++++++.+|+-.+-...
T Consensus       493 --------~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~  531 (881)
T KOG0128|consen  493 --------GGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPE  531 (881)
T ss_pred             --------cchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCch
Confidence                    011222566677777889999999999999888776553

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.41  E-value=9.4e-09  Score=128.61  Aligned_cols=437  Identities=11%  Similarity=0.018  Sum_probs=262.3

Q ss_pred             ccHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001619           21 FGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAV  100 (1043)
Q Consensus        21 ~~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL  100 (1043)
                      .-++.|+++++.+|.+......++..+-..  +..+++..++++++...|..+..-...+......|++++|..+|++++
T Consensus        52 ~Al~~L~qaL~~~P~~~~av~dll~l~~~~--G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL  129 (822)
T PRK14574         52 PVLDYLQEESKAGPLQSGQVDDWLQIAGWA--GRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSL  129 (822)
T ss_pred             HHHHHHHHHHhhCccchhhHHHHHHHHHHc--CCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            346788899999999832222333333333  678888999999995556666666666777788889999999999999


Q ss_pred             HhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCccHH
Q 001619          101 QSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLH  180 (1043)
Q Consensus       101 ~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~l~  180 (1043)
                      +..|.+++++...+...... +..++|...+++++..-|..    ......+.+....++...+..+|++++...+.+..
T Consensus       130 ~~dP~n~~~l~gLa~~y~~~-~q~~eAl~~l~~l~~~dp~~----~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e  204 (822)
T PRK14574        130 KKDPTNPDLISGMIMTQADA-GRGGVVLKQATELAERDPTV----QNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEE  204 (822)
T ss_pred             hhCCCCHHHHHHHHHHHhhc-CCHHHHHHHHHHhcccCcch----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHH
Confidence            99999999998776666666 78888888888888776652    22233333333344554588899999876555444


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHH-HH--HHHHHH
Q 001619          181 HYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKY-RF--IGEQIY  257 (1043)
Q Consensus       181 ~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~-~~--~~~~~y  257 (1043)
                      .+...+...... .        . .....+++...  +..+++.+...+     +.   ...|..|.-- ..  -....|
T Consensus       205 ~~~~~~~~l~~~-~--------~-~~~a~~l~~~~--p~~f~~~~~~~l-----~~---~~~a~~vr~a~~~~~~~~~r~  264 (822)
T PRK14574        205 VLKNHLEILQRN-R--------I-VEPALRLAKEN--PNLVSAEHYRQL-----ER---DAAAEQVRMAVLPTRSETERF  264 (822)
T ss_pred             HHHHHHHHHHHc-C--------C-cHHHHHHHHhC--ccccCHHHHHHH-----HH---HHHHHHHhhcccccccchhhH
Confidence            333333222111 0        0 00000111110  012222221110     00   0000000000 00  000112


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCCCCChHH----HHHHHHHHHHHHHcCChHHHHHHHHHHhcc---CCCcHHHHHHHH
Q 001619          258 KEASQLDEKINCFENLIRRPYFHVKPLDDIQ----LKNWHDYLSFAEKQGDFDWVVKLYERCLIP---CADYPEFWMRYV  330 (1043)
Q Consensus       258 ~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~----~~~W~~yi~~e~~~g~~e~~~~lyerAl~~---~~~~~~LWl~yA  330 (1043)
                      .   .....+..++..+.+.-     ..|..    ..+-.+++-.+...+.+..|+..|+..-..   .|.+..-|+  |
T Consensus       265 ~---~~d~ala~~~~l~~~~~-----~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~--a  334 (822)
T PRK14574        265 D---IADKALADYQNLLTRWG-----KDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA--A  334 (822)
T ss_pred             H---HHHHHHHHHHHHHhhcc-----CCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH--H
Confidence            1   33344555555554210     12322    233445555566678899999999988743   477766665  4


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHHhc---ccch----HHHHHHHHHHHhCCHHHHHHHHHhhhhCC--------------C
Q 001619          331 DFMESKGGREIASYALDRATQIFLK---RLPV----IHLFNARYKEQIGDTSAARAAFPESYIDS--------------D  389 (1043)
Q Consensus       331 k~~e~~g~~e~Ar~ilerA~~~~~~---~~p~----iwl~~A~~E~~~g~~d~Ar~ll~ral~~~--------------~  389 (1043)
                      ..|...+..++|..+|..++....+   ....    .-+.||.+  ..+++++|+.++++..+..              .
T Consensus       335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~l--d~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn  412 (822)
T PRK14574        335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLN--ESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPN  412 (822)
T ss_pred             HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHH--hcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCC
Confidence            5555678899999999988764211   1111    23455544  4899999999999987622              2


Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 001619          390 SRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISN  469 (1043)
Q Consensus       390 ~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~leraR~l~er  469 (1043)
                      ++........+......|++..|.+++++.+..      .|+++.+++.+        +..+...|.   ..+|+.+++.
T Consensus       413 ~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~------aP~n~~l~~~~--------A~v~~~Rg~---p~~A~~~~k~  475 (822)
T PRK14574        413 DDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST------APANQNLRIAL--------ASIYLARDL---PRKAEQELKA  475 (822)
T ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHH--------HHHHHhcCC---HHHHHHHHHH
Confidence            334444444566566679999999999999887      77778777544        444455555   4579999999


Q ss_pred             HhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Q 001619          470 ALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVR  522 (1043)
Q Consensus       470 Al~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~~p~~~~  522 (1043)
                      ++...|++        . .+.-.....-...|+.+.|.++....+..+|....
T Consensus       476 a~~l~P~~--------~-~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~  519 (822)
T PRK14574        476 VESLAPRS--------L-ILERAQAETAMALQEWHQMELLTDDVISRSPEDIP  519 (822)
T ss_pred             HhhhCCcc--------H-HHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence            88877775        1 11111111123459999999999999999997553

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.40  E-value=2e-09  Score=137.10  Aligned_cols=203  Identities=9%  Similarity=-0.020  Sum_probs=162.9

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Q 001619          290 KNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKE  369 (1043)
Q Consensus       290 ~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~  369 (1043)
                      ..|..++......|+++.+...|++++...|....++..++..+...|++++|...|++|+.. .|+ +..|...+.+..
T Consensus       543 ~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l-~P~-~~a~~~LA~~l~  620 (987)
T PRK09782        543 EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI-APS-ANAYVARATIYR  620 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCC-HHHHHHHHHHHH
Confidence            457777777778899999999999999988888777776665556679999999999999987 555 788999999999


Q ss_pred             HhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHH
Q 001619          370 QIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIK  449 (1043)
Q Consensus       370 ~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~  449 (1043)
                      +.|++++|+..|++++. ..|+...++..++.+....|+++.|+.+|+++++.      .|..+.+|.+.+..       
T Consensus       621 ~lG~~deA~~~l~~AL~-l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l------~P~~~~a~~nLA~a-------  686 (987)
T PRK09782        621 QRHNVPAAVSDLRAALE-LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG------LPDDPALIRQLAYV-------  686 (987)
T ss_pred             HCCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHH-------
Confidence            99999999999999996 46667788888888888899999999999999997      67777666544321       


Q ss_pred             HHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Q 001619          450 FTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTV  521 (1043)
Q Consensus       450 fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~~p~~~  521 (1043)
                       ....|+   .+.|+..|++|+...|+.         ..+...+.+.+....+.+.+.+.|.|+...=+++.
T Consensus       687 -l~~lGd---~~eA~~~l~~Al~l~P~~---------a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~  745 (987)
T PRK09782        687 -NQRLDD---MAATQHYARLVIDDIDNQ---------ALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS  745 (987)
T ss_pred             -HHHCCC---HHHHHHHHHHHHhcCCCC---------chhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence             223344   668999999999988876         24556777777777888888888888887766543

>PLN03077 Protein ECB2; Provisional

Probab=99.40  E-value=1.5e-09  Score=139.76  Aligned_cols=434  Identities=12%  Similarity=0.074  Sum_probs=228.0

Q ss_pred             CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCHHHHHHHH
Q 001619           36 DFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSA-TYSVDVWFHYC  114 (1043)
Q Consensus        36 d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~-P~s~~LWl~Y~  114 (1043)
                      |+..+..+|..+-+.  ++++.++.+|+++...   +.-.|..++....+.|.+++|..+|++.+..- .-+...+...+
T Consensus       221 ~~~~~n~Li~~y~k~--g~~~~A~~lf~~m~~~---d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll  295 (857)
T PLN03077        221 DVDVVNALITMYVKC--GDVVSARLVFDRMPRR---DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVI  295 (857)
T ss_pred             ccchHhHHHHHHhcC--CCHHHHHHHHhcCCCC---CcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHH
Confidence            566677777777766  8888888888887543   34568888888888888999999998887752 22344444555


Q ss_pred             HHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCccHHHHH-HHHHHHHHHH
Q 001619          115 SLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYY-DSFKKLAGAW  193 (1043)
Q Consensus       115 ~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~l~~~~-~~y~~~~~~~  193 (1043)
                      ..+... ++.+.+++++..+++. |... +..+|...+....+.|.++.|+++|++... |....|... ..|.. .+.+
T Consensus       296 ~a~~~~-g~~~~a~~l~~~~~~~-g~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-~d~~s~n~li~~~~~-~g~~  370 (857)
T PLN03077        296 SACELL-GDERLGREMHGYVVKT-GFAV-DVSVCNSLIQMYLSLGSWGEAEKVFSRMET-KDAVSWTAMISGYEK-NGLP  370 (857)
T ss_pred             HHHHhc-CChHHHHHHHHHHHHh-CCcc-chHHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCeeeHHHHHHHHHh-CCCH
Confidence            554444 7888888888887764 4433 467888888888888999999999988643 211111111 11111 0111


Q ss_pred             HHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHH------------HHHHHHHH
Q 001619          194 KEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIG------------EQIYKEAS  261 (1043)
Q Consensus       194 ~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~------------~~~y~~a~  261 (1043)
                      ++        +.+.+.++...+..+   +..-....+. ..-..+.++.++.++.+..-.            -..|-+..
T Consensus       371 ~~--------A~~lf~~M~~~g~~P---d~~t~~~ll~-a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g  438 (857)
T PLN03077        371 DK--------ALETYALMEQDNVSP---DEITIASVLS-ACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK  438 (857)
T ss_pred             HH--------HHHHHHHHHHhCCCC---CceeHHHHHH-HHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcC
Confidence            11        111222222121111   1111111111 122334455555555432100            11233333


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHH
Q 001619          262 QLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREI  341 (1043)
Q Consensus       262 ~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~  341 (1043)
                      ....++..|++...           .+...|...+.-+..+|+.++|..+|++.+....-....+...+.-+.+.|+++.
T Consensus       439 ~~~~A~~vf~~m~~-----------~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~  507 (857)
T PLN03077        439 CIDKALEVFHNIPE-----------KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMC  507 (857)
T ss_pred             CHHHHHHHHHhCCC-----------CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHH
Confidence            33444444443221           1345788888777778888888888888775322222333333333344444455


Q ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001619          342 ASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALE  421 (1043)
Q Consensus       342 Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale  421 (1043)
                      ++.++..+++.-......+.-...++..+.|+++.|+++|...  .  + ....|-..+.-..+.|..++|.++|+++++
T Consensus       508 ~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~--~-d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~  582 (857)
T PLN03077        508 GKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--E--K-DVVSWNILLTGYVAHGKGSMAVELFNRMVE  582 (857)
T ss_pred             hHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--C--C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            5554444443211111122223334444455555555555443  1  1 122344444444444555555555554443


Q ss_pred             HHHhhccCCccHHHHHHH--------H----------------HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCc
Q 001619          422 TAAEQRKFHTLPLLYVQF--------S----------------RLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDV  477 (1043)
Q Consensus       422 ~~~~~~~~p~~~~l~~~~--------a----------------r~~~~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~  477 (1043)
                      .-. .+...++..+..-+        +                ...|...+.+..+.|.   ++.|..+|+..- ..|+ 
T Consensus       583 ~g~-~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~---~~eA~~~~~~m~-~~pd-  656 (857)
T PLN03077        583 SGV-NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK---LTEAYNFINKMP-ITPD-  656 (857)
T ss_pred             cCC-CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC---HHHHHHHHHHCC-CCCC-
Confidence            210 00000000000000        0                0112333444444443   678888888752 2233 


Q ss_pred             cccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Q 001619          478 LKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVR  522 (1043)
Q Consensus       478 ~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~~p~~~~  522 (1043)
                               ..+|...+...+.+|+.+.+..+.++.++.-|....
T Consensus       657 ---------~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~  692 (857)
T PLN03077        657 ---------PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVG  692 (857)
T ss_pred             ---------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcc
Confidence                     256888888888999999999999999998887554

>TIGR00540 hemY_coli hemY protein

Probab=99.40  E-value=1.8e-09  Score=126.92  Aligned_cols=320  Identities=12%  Similarity=0.035  Sum_probs=233.4

Q ss_pred             HHHHHhCCCCHHHHHHHHHHHH----------hcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 001619           27 EEFIAEGSLDFDEWTSLLSEIE----------NSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVF   96 (1043)
Q Consensus        27 e~~i~~nP~d~~~W~~~i~~le----------~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lf   96 (1043)
                      -..+..-|..+..|..-=+.-+          ...+|+...+++...++.+..|...-.+...++.....|+++++...|
T Consensus        62 ~~~~~~~p~~~~~~~~~r~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l  141 (409)
T TIGR00540        62 LRRFFRLGAHSRGWFSGRKRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHL  141 (409)
T ss_pred             HHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            3445567888888865422100          112489999999999999999988888888888888889999999999


Q ss_pred             HHHHHhcCCC-HHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCC
Q 001619           97 ERAVQSATYS-VDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFP  175 (1043)
Q Consensus        97 eRAL~~~P~s-~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p  175 (1043)
                      +++++..|.+ +.+...++++.+.. ++.+.|+..+++.++.-|.   +..++..+.......|+++.+.+++.+.++.-
T Consensus       142 ~~a~~~~p~~~l~~~~~~a~l~l~~-~~~~~Al~~l~~l~~~~P~---~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~  217 (409)
T TIGR00540       142 EEAAELAGNDNILVEIARTRILLAQ-NELHAARHGVDKLLEMAPR---HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG  217 (409)
T ss_pred             HHHHHhCCcCchHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence            9999998887 47888889998888 8999999999999998886   55788899999999999999999999988642


Q ss_pred             CccHHHHH-HHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHH
Q 001619          176 SKKLHHYY-DSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGE  254 (1043)
Q Consensus       176 ~~~l~~~~-~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~  254 (1043)
                      ..+-.... .....+.+.+..               .                                           
T Consensus       218 ~~~~~~~~~l~~~a~~~~l~~---------------~-------------------------------------------  239 (409)
T TIGR00540       218 LFDDEEFADLEQKAEIGLLDE---------------A-------------------------------------------  239 (409)
T ss_pred             CCCHHHHHHHHHHHHHHHHHH---------------H-------------------------------------------
Confidence            11100000 000000000000               0                                           


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHH----HHHHH
Q 001619          255 QIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEF----WMRYV  330 (1043)
Q Consensus       255 ~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~L----Wl~yA  330 (1043)
                       ..++.      ...++.....    .....+++..+|..++..+...|+++.+..+++++++..|+...+    ...+.
T Consensus       240 -~~~~~------~~~L~~~~~~----~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~  308 (409)
T TIGR00540       240 -MADEG------IDGLLNWWKN----QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIP  308 (409)
T ss_pred             -HHhcC------HHHHHHHHHH----CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhh
Confidence             00000      0011111110    000113477899999999999999999999999999988887753    33333


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHHhcccc--hHHHHHHHHHHHhCCHHHHHHHHHh--hhhCCChhhHHHHHHHHHHHHHc
Q 001619          331 DFMESKGGREIASYALDRATQIFLKRLP--VIHLFNARYKEQIGDTSAARAAFPE--SYIDSDSRFIEKVTFKANMERRL  406 (1043)
Q Consensus       331 k~~e~~g~~e~Ar~ilerA~~~~~~~~p--~iwl~~A~~E~~~g~~d~Ar~ll~r--al~~~~~~~~~lw~~~a~lE~~~  406 (1043)
                      ..  ..++.+.++..++++++. .|+++  .+...++.+..+.|++++|++.|++  +++. .|+. ..+..++.+....
T Consensus       309 ~l--~~~~~~~~~~~~e~~lk~-~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~-~p~~-~~~~~La~ll~~~  383 (409)
T TIGR00540       309 RL--KPEDNEKLEKLIEKQAKN-VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE-QLDA-NDLAMAADAFDQA  383 (409)
T ss_pred             hc--CCCChHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc-CCCH-HHHHHHHHHHHHc
Confidence            32  247789999999999987 77888  8888999999999999999999995  5543 3443 3466889999999


Q ss_pred             CCHHHHHHHHHHHHHHHH
Q 001619          407 GNFVAACDTYKEALETAA  424 (1043)
Q Consensus       407 G~~e~Ar~lyekale~~~  424 (1043)
                      |+.++|+++|++++....
T Consensus       384 g~~~~A~~~~~~~l~~~~  401 (409)
T TIGR00540       384 GDKAEAAAMRQDSLGLML  401 (409)
T ss_pred             CCHHHHHHHHHHHHHHHh
Confidence            999999999999998754

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.35  E-value=1.4e-08  Score=122.16  Aligned_cols=355  Identities=14%  Similarity=0.102  Sum_probs=227.6

Q ss_pred             CCCCCccHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHH
Q 001619           16 NSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLC-----YGYWRKYADHKARLCSID   90 (1043)
Q Consensus        16 ~~~~~~~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s-----~~lW~~y~~~e~~~~~~e   90 (1043)
                      ++++++.+..+-..+..+|.++-..+.-+...-..  +++..+..+|.++|..+|.+     +.+|+.+++    .++.+
T Consensus       143 ~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynk--kdY~~al~yyk~al~inp~~~aD~rIgig~Cf~k----l~~~~  216 (1018)
T KOG2002|consen  143 DKSMDDADAQFHFVLKQSPDNILALLGKARIAYNK--KDYRGALKYYKKALRINPACKADVRIGIGHCFWK----LGMSE  216 (1018)
T ss_pred             CccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhcc--ccHHHHHHHHHHHHhcCcccCCCccchhhhHHHh----ccchh
Confidence            33477777788888888888887777765544333  67888888888888888875     355655554    34667


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHH
Q 001619           91 KVVEVFERAVQSATYSVDVWFHYCSLSMSTF--EDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIF  168 (1043)
Q Consensus        91 ~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~--~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy  168 (1043)
                      .|+..|+|||..+|.++...+.++.+...+.  ..+.++..++.+|...-+.++   .+-...+...-..|++..|..++
T Consensus       217 ~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP---~~l~~LAn~fyfK~dy~~v~~la  293 (1018)
T KOG2002|consen  217 KALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENP---VALNHLANHFYFKKDYERVWHLA  293 (1018)
T ss_pred             hHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCc---HHHHHHHHHHhhcccHHHHHHHH
Confidence            8888888888888888887777776655541  234556666666666555433   33334444444456777777777


Q ss_pred             HHHhcCCCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHH
Q 001619          169 VQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQK  248 (1043)
Q Consensus       169 ~raL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~  248 (1043)
                      .-+++.-....-..-..|  +++                                        +.++..|.++.|...|-
T Consensus       294 ~~ai~~t~~~~~~aes~Y--~~g----------------------------------------Rs~Ha~Gd~ekA~~yY~  331 (1018)
T KOG2002|consen  294 EHAIKNTENKSIKAESFY--QLG----------------------------------------RSYHAQGDFEKAFKYYM  331 (1018)
T ss_pred             HHHHHhhhhhHHHHHHHH--HHH----------------------------------------HHHHhhccHHHHHHHHH
Confidence            777653221111100001  000                                        00011111111111110


Q ss_pred             -------------HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcC----ChHHHHHH
Q 001619          249 -------------YRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQG----DFDWVVKL  311 (1043)
Q Consensus       249 -------------~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g----~~e~~~~l  311 (1043)
                                   +.. ..++|-+..++......||+.++        ..|++.+.-.-+..++...+    ..+++..+
T Consensus       332 ~s~k~~~d~~~l~~~G-lgQm~i~~~dle~s~~~fEkv~k--------~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~  402 (1018)
T KOG2002|consen  332 ESLKADNDNFVLPLVG-LGQMYIKRGDLEESKFCFEKVLK--------QLPNNYETMKILGCLYAHSAKKQEKRDKASNV  402 (1018)
T ss_pred             HHHccCCCCccccccc-hhHHHHHhchHHHHHHHHHHHHH--------hCcchHHHHHHHHhHHHhhhhhhHHHHHHHHH
Confidence                         000 12334444566667778888876        34777766666666654332    56889999


Q ss_pred             HHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc---ccchHHH-HHHHHHHHhCCHHHHHHHHHhhhhC
Q 001619          312 YERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLK---RLPVIHL-FNARYKEQIGDTSAARAAFPESYID  387 (1043)
Q Consensus       312 yerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~---~~p~iwl-~~A~~E~~~g~~d~Ar~ll~ral~~  387 (1043)
                      ..+++...+...+.|+..+..++. +|.-.+..+|.+|+..+..   ..|--|+ .-|-+..+.|+++.|+..|..|...
T Consensus       403 l~K~~~~~~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~  481 (1018)
T KOG2002|consen  403 LGKVLEQTPVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGK  481 (1018)
T ss_pred             HHHHHhcccccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh
Confidence            999999999999999999999775 5666778999999876543   2443444 4577888999999999999999764


Q ss_pred             CC----h---hhHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHH
Q 001619          388 SD----S---RFIE--KVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYV  437 (1043)
Q Consensus       388 ~~----~---~~~~--lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~  437 (1043)
                      ..    +   +.+.  +-+..+.+.+.+++++.|-++|..+++.      +|+....|+
T Consensus       482 ~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke------hp~YId~yl  534 (1018)
T KOG2002|consen  482 LLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE------HPGYIDAYL  534 (1018)
T ss_pred             hhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH------CchhHHHHH
Confidence            21    1   1122  3455688899999999999999999997      666554443

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.33  E-value=4.4e-09  Score=132.33  Aligned_cols=418  Identities=11%  Similarity=0.057  Sum_probs=259.6

Q ss_pred             CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 001619           35 LDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAE-FPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHY  113 (1043)
Q Consensus        35 ~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~-~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y  113 (1043)
                      -|...|..++..+.+.  +.++.++.++..+.+. +.-+...|..++....+.|++++|+.+|++...   .++..|...
T Consensus       121 ~~~~t~~~ll~a~~~~--~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~~~~t~n~l  195 (697)
T PLN03081        121 LPASTYDALVEACIAL--KSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE---RNLASWGTI  195 (697)
T ss_pred             CCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC---CCeeeHHHH
Confidence            4677888888877766  7888888999888764 233578899999999999999999999998754   366788888


Q ss_pred             HHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCc-c--H-HHHHHHHHHH
Q 001619          114 CSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSK-K--L-HHYYDSFKKL  189 (1043)
Q Consensus       114 ~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~-~--l-~~~~~~y~~~  189 (1043)
                      +.-+.+. +.+++|.++|++.++. |... +...|...+......+..+.++.++..+++.... +  . ......|.+ 
T Consensus       196 i~~~~~~-g~~~~A~~lf~~M~~~-g~~p-~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k-  271 (697)
T PLN03081        196 IGGLVDA-GNYREAFALFREMWED-GSDA-EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSK-  271 (697)
T ss_pred             HHHHHHC-cCHHHHHHHHHHHHHh-CCCC-ChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHH-
Confidence            8888877 8999999999998764 3322 2344445554444455555555555554432111 0  0 000111111 


Q ss_pred             HHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHH-----HHH-------HHH
Q 001619          190 AGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRF-----IGE-------QIY  257 (1043)
Q Consensus       190 ~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~-----~~~-------~~y  257 (1043)
                      .+.++++         ..+++.+...       +...|..+-..+-..+..+.|..++..+.     ...       ..|
T Consensus       272 ~g~~~~A---------~~vf~~m~~~-------~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~  335 (697)
T PLN03081        272 CGDIEDA---------RCVFDGMPEK-------TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF  335 (697)
T ss_pred             CCCHHHH---------HHHHHhCCCC-------ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            0001110         0111111000       00111111111112233333333332210     001       112


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcC
Q 001619          258 KEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKG  337 (1043)
Q Consensus       258 ~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g  337 (1043)
                      .+...+......++..++..       .+.+...+..+++.+.+.|+++.|..+|++....   ....|...+.-|-++|
T Consensus       336 ~~~g~~~~a~~i~~~m~~~g-------~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~---d~~t~n~lI~~y~~~G  405 (697)
T PLN03081        336 SRLALLEHAKQAHAGLIRTG-------FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK---NLISWNALIAGYGNHG  405 (697)
T ss_pred             HhccchHHHHHHHHHHHHhC-------CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC---CeeeHHHHHHHHHHcC
Confidence            22223333444455554431       1234567888999999999999999999998753   4467999999999999


Q ss_pred             ChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhC--CChhhHHHHHHHHHHHHHcCCHHHHHHH
Q 001619          338 GREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYID--SDSRFIEKVTFKANMERRLGNFVAACDT  415 (1043)
Q Consensus       338 ~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~--~~~~~~~lw~~~a~lE~~~G~~e~Ar~l  415 (1043)
                      +.++|..+|++....-..-+...+.....-..+.|.+++|+.+|+...+.  ..|+ ...|...+++.-+.|.+++|.++
T Consensus       406 ~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~-~~~y~~li~~l~r~G~~~eA~~~  484 (697)
T PLN03081        406 RGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR-AMHYACMIELLGREGLLDEAYAM  484 (697)
T ss_pred             CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-ccchHhHHHHHHhcCCHHHHHHH
Confidence            99999999999876422222235566666678899999999999998752  2233 45677788899999999999999


Q ss_pred             HHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHH
Q 001619          416 YKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQ  495 (1043)
Q Consensus       416 yekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~  495 (1043)
                      |+++--       .|. ...        |..++.--..+|+   ++.++.++++.+...|++.         ..+.+-+.
T Consensus       485 ~~~~~~-------~p~-~~~--------~~~Ll~a~~~~g~---~~~a~~~~~~l~~~~p~~~---------~~y~~L~~  536 (697)
T PLN03081        485 IRRAPF-------KPT-VNM--------WAALLTACRIHKN---LELGRLAAEKLYGMGPEKL---------NNYVVLLN  536 (697)
T ss_pred             HHHCCC-------CCC-HHH--------HHHHHHHHHHcCC---cHHHHHHHHHHhCCCCCCC---------cchHHHHH
Confidence            875421       221 222        3444444445565   5689999999998877651         12333444


Q ss_pred             HHHHcCCHHHHHHHHHHHHhh
Q 001619          496 FLDLCGTIHDIRNAWNQHIKL  516 (1043)
Q Consensus       496 fee~~G~~~~a~~~~~ra~k~  516 (1043)
                      ..-..|..+.|.+++.++.+.
T Consensus       537 ~y~~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        537 LYNSSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             HHHhCCCHHHHHHHHHHHHHc
Confidence            445679999999999887655

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=1.4e-08  Score=113.26  Aligned_cols=334  Identities=13%  Similarity=0.157  Sum_probs=208.6

Q ss_pred             CCCHHHHHHHHHH--HHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hcCCCHHHH
Q 001619           34 SLDFDEWTSLLSE--IENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQ-SATYSVDVW  110 (1043)
Q Consensus        34 P~d~~~W~~~i~~--le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~-~~P~s~~LW  110 (1043)
                      -.+.+.|.-|+.=  +.+.  +.+..+...|...+...|.....|.++.++...   .+.+. ++--.+. .+..+.+..
T Consensus       159 ~~~~D~fllYL~Gvv~k~~--~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~---~e~~~-~l~~~l~~~~h~M~~~F  232 (559)
T KOG1155|consen  159 GGEKDEFLLYLYGVVLKEL--GLLSLAIDSFVEVVNRYPWFWSAWLELSELITD---IEILS-ILVVGLPSDMHWMKKFF  232 (559)
T ss_pred             cccchhHHHHHHHHHHHhh--chHHHHHHHHHHHHhcCCcchHHHHHHHHhhch---HHHHH-HHHhcCcccchHHHHHH
Confidence            4456678877552  2333  678889999999999999988888877776532   22222 2211111 122233333


Q ss_pred             HHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCccHHHHHHHHHHHH
Q 001619          111 FHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLA  190 (1043)
Q Consensus       111 l~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~l~~~~~~y~~~~  190 (1043)
                      +.++--+.   ...+.++.-+++-+. +|+.. +.-|=...+...-...+++.|..+|+..++..+..+... +.|..  
T Consensus       233 ~~~a~~el---~q~~e~~~k~e~l~~-~gf~~-~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dm-dlySN--  304 (559)
T KOG1155|consen  233 LKKAYQEL---HQHEEALQKKERLSS-VGFPN-SMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDM-DLYSN--  304 (559)
T ss_pred             HHHHHHHH---HHHHHHHHHHHHHHh-ccCCc-cHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhH-HHHhH--
Confidence            33332222   234555555554443 33322 233333333334456779999999999987544432221 01111  


Q ss_pred             HHHHHhhhhhhhhhHHHHHHhhhc-cccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001619          191 GAWKEELECESDSAMEFQSELVLE-GEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINC  269 (1043)
Q Consensus       191 ~~~~e~l~~~~~~~~~~~~e~i~~-~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~  269 (1043)
                           .+-.+..+  ..+.-+... ..+....  -|.-++|+.|                       |.-..+-..+..-
T Consensus       305 -----~LYv~~~~--skLs~LA~~v~~idKyR--~ETCCiIaNY-----------------------YSlr~eHEKAv~Y  352 (559)
T KOG1155|consen  305 -----VLYVKNDK--SKLSYLAQNVSNIDKYR--PETCCIIANY-----------------------YSLRSEHEKAVMY  352 (559)
T ss_pred             -----HHHHHhhh--HHHHHHHHHHHHhccCC--ccceeeehhH-----------------------HHHHHhHHHHHHH
Confidence                 00000000  000000000 0000000  0111122211                       2111122233344


Q ss_pred             HHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001619          270 FENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRA  349 (1043)
Q Consensus       270 fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA  349 (1043)
                      |.++++        +||....+|.-..-=+...++...|+..|.+||..||.....|......|+..+-..-|.-.|.||
T Consensus       353 FkRALk--------LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA  424 (559)
T KOG1155|consen  353 FKRALK--------LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKA  424 (559)
T ss_pred             HHHHHh--------cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHH
Confidence            555554        789999999877665556788899999999999999999999999999999999999999999999


Q ss_pred             HHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001619          350 TQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETA  423 (1043)
Q Consensus       350 ~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~  423 (1043)
                      +.. .|+.+.+|.+.+++.++.+++++|.+.|++|+.. ....-..+...+++-+++++.++|...|++.++..
T Consensus       425 ~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~-~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~  496 (559)
T KOG1155|consen  425 LEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL-GDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS  496 (559)
T ss_pred             Hhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            976 7888999999999999999999999999999963 22223467778999999999999999999999954

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.27  E-value=3.1e-08  Score=118.54  Aligned_cols=349  Identities=13%  Similarity=0.083  Sum_probs=220.1

Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 001619           38 DEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLS  117 (1043)
Q Consensus        38 ~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~  117 (1043)
                      ..-+..++.+-..  |+++.+.+++..+++..|..+..|..++...+..|+.+++...+-.|-..+|.+.++|...+++.
T Consensus       140 ~~ll~eAN~lfar--g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls  217 (895)
T KOG2076|consen  140 RQLLGEANNLFAR--GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS  217 (895)
T ss_pred             HHHHHHHHHHHHh--CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            3333444433333  89999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCC-ccHHHHHHH----HHHHHHH
Q 001619          118 MSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPS-KKLHHYYDS----FKKLAGA  192 (1043)
Q Consensus       118 ~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~-~~l~~~~~~----y~~~~~~  192 (1043)
                      ... ++++.||-.|.||+...|...   ++-..+..+..+.|...+|..-|.+++...+ .++....+.    -..++..
T Consensus       218 ~~~-~~i~qA~~cy~rAI~~~p~n~---~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~  293 (895)
T KOG2076|consen  218 EQL-GNINQARYCYSRAIQANPSNW---ELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITH  293 (895)
T ss_pred             Hhc-ccHHHHHHHHHHHHhcCCcch---HHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHh
Confidence            888 999999999999999999853   3444456677788999999999999987533 222111111    1111111


Q ss_pred             HHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 001619          193 WKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINC---  269 (1043)
Q Consensus       193 ~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~---  269 (1043)
                      .+.      +.+.+.+...+..+.-.....+.                    .|+....+....|+++.........   
T Consensus       294 ~~~------e~a~~~le~~~s~~~~~~~~ed~--------------------ni~ael~l~~~q~d~~~~~i~~~~~r~~  347 (895)
T KOG2076|consen  294 NER------ERAAKALEGALSKEKDEASLEDL--------------------NILAELFLKNKQSDKALMKIVDDRNRES  347 (895)
T ss_pred             hHH------HHHHHHHHHHHhhccccccccHH--------------------HHHHHHHHHhHHHHHhhHHHHHHhcccc
Confidence            000      11111222111111000000011                    1111111222223322221111111   


Q ss_pred             ---------HHHHhcc--cCCCCCCCChHHHHHHHHHHHHH-HHcCChHHH-HH-HHHHHhccCCCcHHHHHHHHHHHHH
Q 001619          270 ---------FENLIRR--PYFHVKPLDDIQLKNWHDYLSFA-EKQGDFDWV-VK-LYERCLIPCADYPEFWMRYVDFMES  335 (1043)
Q Consensus       270 ---------fE~~i~r--~~~~~~~~~p~~~~~W~~yi~~e-~~~g~~e~~-~~-lyerAl~~~~~~~~LWl~yAk~~e~  335 (1043)
                               .|..-..  .++.+...-+.+..+..-.+-+. .+.+...++ .. +-++.+ ......+|.+..|+.+..
T Consensus       348 e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~-~~~d~~dL~~d~a~al~~  426 (895)
T KOG2076|consen  348 EKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNV-WVSDDVDLYLDLADALTN  426 (895)
T ss_pred             CCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcC-ChhhhHHHHHHHHHHHHh
Confidence                     0000000  00000001111222211111111 111222111 11 111111 235668999999999999


Q ss_pred             cCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Q 001619          336 KGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDT  415 (1043)
Q Consensus       336 ~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~l  415 (1043)
                      .|.+..|...|..++....-.+..+|..-|.++...|.++.|...|++++. ..|..+++-+..+.+....|+.++|.++
T Consensus       427 ~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~-~~p~~~D~Ri~Lasl~~~~g~~EkalEt  505 (895)
T KOG2076|consen  427 IGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLI-LAPDNLDARITLASLYQQLGNHEKALET  505 (895)
T ss_pred             cccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHh-cCCCchhhhhhHHHHHHhcCCHHHHHHH
Confidence            999999999999998765556678999999999999999999999999996 4677788888999999999999999998


Q ss_pred             HHHHH
Q 001619          416 YKEAL  420 (1043)
Q Consensus       416 yekal  420 (1043)
                      ++..+
T Consensus       506 L~~~~  510 (895)
T KOG2076|consen  506 LEQII  510 (895)
T ss_pred             Hhccc
Confidence            87744

>PLN03077 Protein ECB2; Provisional

Probab=99.26  E-value=4.5e-08  Score=126.18  Aligned_cols=419  Identities=10%  Similarity=0.028  Sum_probs=252.8

Q ss_pred             CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCHHHHH
Q 001619           35 LDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAE--FPLCYGYWRKYADHKARLCSIDKVVEVFERAVQS-ATYSVDVWF  111 (1043)
Q Consensus        35 ~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~--~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~-~P~s~~LWl  111 (1043)
                      .|.-.|..+|..+-+.  +..+++..+|++++..  .|+ .-.+...+....+.|+++.++.++..+++. +..++.+|.
T Consensus       251 ~d~~s~n~li~~~~~~--g~~~eAl~lf~~M~~~g~~Pd-~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n  327 (857)
T PLN03077        251 RDCISWNAMISGYFEN--GECLEGLELFFTMRELSVDPD-LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCN  327 (857)
T ss_pred             CCcchhHHHHHHHHhC--CCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHH
Confidence            3677899999887776  8999999999999875  454 444566666667788999999999998876 344778888


Q ss_pred             HHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcC---CCcc-HHHHHHHHH
Q 001619          112 HYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRF---PSKK-LHHYYDSFK  187 (1043)
Q Consensus       112 ~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~---p~~~-l~~~~~~y~  187 (1043)
                      .++..+.+. ++++.|+++|++...   .   +...|...+.-..+.|.++.|.++|++....   |... +......+.
T Consensus       328 ~Li~~y~k~-g~~~~A~~vf~~m~~---~---d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~  400 (857)
T PLN03077        328 SLIQMYLSL-GSWGEAEKVFSRMET---K---DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACA  400 (857)
T ss_pred             HHHHHHHhc-CCHHHHHHHHhhCCC---C---CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHh
Confidence            888888888 899999999987532   1   3457999998888899999999999987542   2221 111111111


Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHH--------HHHHHHHHH
Q 001619          188 KLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYR--------FIGEQIYKE  259 (1043)
Q Consensus       188 ~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~--------~~~~~~y~~  259 (1043)
                      . .+.++.+         ..+.+.+.+..+.   .+......+-+.+-..+..+.|+.+++.+        ...-..|.+
T Consensus       401 ~-~g~~~~a---------~~l~~~~~~~g~~---~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~  467 (857)
T PLN03077        401 C-LGDLDVG---------VKLHELAERKGLI---SYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRL  467 (857)
T ss_pred             c-cchHHHH---------HHHHHHHHHhCCC---cchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence            0 1111110         0111111111100   00111111112222333344444333311        000001111


Q ss_pred             HHHHHHHHHHHHHH----------------------------------hcccCCCCCCCChHHHHHHHHHHHHHHHcCCh
Q 001619          260 ASQLDEKINCFENL----------------------------------IRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDF  305 (1043)
Q Consensus       260 a~~~~~~~~~fE~~----------------------------------i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~  305 (1043)
                      .....+++..|++.                                  ++.-+       ..+......+++.+.+.|++
T Consensus       468 ~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~-------~~~~~~~naLi~~y~k~G~~  540 (857)
T PLN03077        468 NNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI-------GFDGFLPNALLDLYVRCGRM  540 (857)
T ss_pred             CCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCC-------CccceechHHHHHHHHcCCH
Confidence            11111222222222                                  21100       11222344667888888999


Q ss_pred             HHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-hcccchHHHHHHHHHHHhCCHHHHHHHHHhh
Q 001619          306 DWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIF-LKRLPVIHLFNARYKEQIGDTSAARAAFPES  384 (1043)
Q Consensus       306 e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~-~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ra  384 (1043)
                      +.|..+|+++    ......|...+.-+..+|+.++|..+|++....- .|+. ..+.....-..+.|.+++|+.+|+..
T Consensus       541 ~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M  615 (857)
T PLN03077        541 NYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGMVTQGLEYFHSM  615 (857)
T ss_pred             HHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHH
Confidence            9999999886    4566789999999999999999999999877641 2222 23444445567789999999999988


Q ss_pred             hhC--CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCCchHHH
Q 001619          385 YID--SDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISI  462 (1043)
Q Consensus       385 l~~--~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~ler  462 (1043)
                      ...  ..|+ ...|...+++..+.|.+++|.++++++- .      .|. +..|        ..++.--..+|+   ++.
T Consensus       616 ~~~~gi~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~------~pd-~~~~--------~aLl~ac~~~~~---~e~  675 (857)
T PLN03077        616 EEKYSITPN-LKHYACVVDLLGRAGKLTEAYNFINKMP-I------TPD-PAVW--------GALLNACRIHRH---VEL  675 (857)
T ss_pred             HHHhCCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHCC-C------CCC-HHHH--------HHHHHHHHHcCC---hHH
Confidence            732  2333 5678888899999999999999988752 1      221 3333        333333334454   567


Q ss_pred             HHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 001619          463 VDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLF  517 (1043)
Q Consensus       463 aR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~~  517 (1043)
                      ++.+.+++++..|++.         ..+.+.....-..|..+.|.++...+...-
T Consensus       676 ~e~~a~~l~~l~p~~~---------~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g  721 (857)
T PLN03077        676 GELAAQHIFELDPNSV---------GYYILLCNLYADAGKWDEVARVRKTMRENG  721 (857)
T ss_pred             HHHHHHHHHhhCCCCc---------chHHHHHHHHHHCCChHHHHHHHHHHHHcC
Confidence            7888888888888762         112222222245688888888887776553

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.23  E-value=5.1e-08  Score=114.25  Aligned_cols=316  Identities=11%  Similarity=0.034  Sum_probs=218.7

Q ss_pred             HHHHHhCCCCHHHHHHHHHH----------HHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 001619           27 EEFIAEGSLDFDEWTSLLSE----------IENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVF   96 (1043)
Q Consensus        27 e~~i~~nP~d~~~W~~~i~~----------le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lf   96 (1043)
                      -..|..-|..+..|..-=+.          +....+|+.+.+++...++-+..+...-.+...+......|+++.+...|
T Consensus        62 ~~~~~~~p~~~~~~~~~rr~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l  141 (398)
T PRK10747         62 LRRIFRTGARTRGWFVGRKRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHL  141 (398)
T ss_pred             HHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            34455668888888553111          00112378888887777666554333444455556657788999999999


Q ss_pred             HHHHHhcCCCH-HHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCC
Q 001619           97 ERAVQSATYSV-DVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFP  175 (1043)
Q Consensus        97 eRAL~~~P~s~-~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p  175 (1043)
                      ++|.+..|... ...+.-+++.... ++.+.|..+++++++.-|.   +.......+......|+++.+.+++.+..+.-
T Consensus       142 ~~A~~~~~~~~~~~~l~~a~l~l~~-g~~~~Al~~l~~~~~~~P~---~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~  217 (398)
T PRK10747        142 ERAAELADNDQLPVEITRVRIQLAR-NENHAARHGVDKLLEVAPR---HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH  217 (398)
T ss_pred             HHHHhcCCcchHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC
Confidence            99999888764 3333446666666 8999999999999988776   45666777777778899999999988887632


Q ss_pred             CccHHHHHHHHH--HHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHH
Q 001619          176 SKKLHHYYDSFK--KLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIG  253 (1043)
Q Consensus       176 ~~~l~~~~~~y~--~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~  253 (1043)
                      ..+-.. ...+.  .++....               ....                                        
T Consensus       218 ~~~~~~-~~~l~~~a~~~l~~---------------~~~~----------------------------------------  241 (398)
T PRK10747        218 VGDEEH-RAMLEQQAWIGLMD---------------QAMA----------------------------------------  241 (398)
T ss_pred             CCCHHH-HHHHHHHHHHHHHH---------------HHHH----------------------------------------
Confidence            211110 00000  0000000               0000                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHH
Q 001619          254 EQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFM  333 (1043)
Q Consensus       254 ~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~  333 (1043)
                          ..      ....++...+.    .....|.+..++..|+......|+.+.+..++++++. .+..+.+...|+...
T Consensus       242 ----~~------~~~~l~~~w~~----lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l~  306 (398)
T PRK10747        242 ----DQ------GSEGLKRWWKN----QSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLVLLIPRLK  306 (398)
T ss_pred             ----hc------CHHHHHHHHHh----CCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhcc
Confidence                00      00000111100    0001255678999999999999999999999999999 455778888888864


Q ss_pred             HHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHH
Q 001619          334 ESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAAC  413 (1043)
Q Consensus       334 e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar  413 (1043)
                        .++.+++...+++.++. .|+++.+++.++.+..+.|++++|++.|+++++. .|+ ...+..++.+.+..|+.++|.
T Consensus       307 --~~~~~~al~~~e~~lk~-~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~-~P~-~~~~~~La~~~~~~g~~~~A~  381 (398)
T PRK10747        307 --TNNPEQLEKVLRQQIKQ-HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ-RPD-AYDYAWLADALDRLHKPEEAA  381 (398)
T ss_pred             --CCChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCC-HHHHHHHHHHHHHcCCHHHHH
Confidence              38899999999998877 7788999999999999999999999999999964 454 345778889999999999999


Q ss_pred             HHHHHHHHH
Q 001619          414 DTYKEALET  422 (1043)
Q Consensus       414 ~lyekale~  422 (1043)
                      .+|++++..
T Consensus       382 ~~~~~~l~~  390 (398)
T PRK10747        382 AMRRDGLML  390 (398)
T ss_pred             HHHHHHHhh
Confidence            999999986

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.21  E-value=5.4e-09  Score=111.00  Aligned_cols=201  Identities=17%  Similarity=0.155  Sum_probs=148.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHH
Q 001619           72 CYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKY  151 (1043)
Q Consensus        72 s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~y  151 (1043)
                      ....|...+......|++++|...|++++...|.+...|..++.+.... ++.+.|.+.|++++...|.   ...+|..+
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~---~~~~~~~~  105 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQL-GELEKAEDSFRRALTLNPN---NGDVLNNY  105 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCC---CHHHHHHH
Confidence            3567777777777888899999999999988888888888888887777 8888899999988887664   34667777


Q ss_pred             HHHHHHhhhhhhHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHH
Q 001619          152 IEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIK  231 (1043)
Q Consensus       152 i~fe~~~~~~e~a~~iy~raL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~  231 (1043)
                      ..+....|+++.+.+.|.+++..+..                                                      
T Consensus       106 ~~~~~~~g~~~~A~~~~~~~~~~~~~------------------------------------------------------  131 (234)
T TIGR02521       106 GTFLCQQGKYEQAMQQFEQAIEDPLY------------------------------------------------------  131 (234)
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcccc------------------------------------------------------
Confidence            76666667777776666666543110                                                      


Q ss_pred             hhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHH
Q 001619          232 DLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKL  311 (1043)
Q Consensus       232 ~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~l  311 (1043)
                                                                            +.....|..++..+...|+++.+...
T Consensus       132 ------------------------------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~  157 (234)
T TIGR02521       132 ------------------------------------------------------PQPARSLENAGLCALKAGDFDKAEKY  157 (234)
T ss_pred             ------------------------------------------------------ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence                                                                  00111233334444457888888888


Q ss_pred             HHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhh
Q 001619          312 YERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESY  385 (1043)
Q Consensus       312 yerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral  385 (1043)
                      |++++...+.....|..++..+...|+++.|...|++++.. .+..+..|...+.+....|+.+.|+.+.+.+.
T Consensus       158 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  230 (234)
T TIGR02521       158 LTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ  230 (234)
T ss_pred             HHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888876 45556666677777888888888887766654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.20  E-value=2.2e-07  Score=116.51  Aligned_cols=405  Identities=8%  Similarity=-0.037  Sum_probs=238.3

Q ss_pred             cHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001619           22 GKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQ  101 (1043)
Q Consensus        22 ~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~  101 (1043)
                      -+..+++++...|.....-..++..+...  ++.+++..+|+++++.+|.+..++...+......+..++|...+++++.
T Consensus        87 A~~~~eka~~p~n~~~~~llalA~ly~~~--gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~  164 (822)
T PRK14574         87 VIDVYERYQSSMNISSRGLASAARAYRNE--KRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAE  164 (822)
T ss_pred             HHHHHHHhccCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc
Confidence            34556677733455555555445566665  8999999999999999999999999888888888999999999999999


Q ss_pred             hcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCccHHH
Q 001619          102 SATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHH  181 (1043)
Q Consensus       102 ~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~l~~  181 (1043)
                      ..|..... +..+.+.... +...+|..+|+++++.-|.   ...++..|...+.+.|....|.++..+.-..-+ ....
T Consensus       165 ~dp~~~~~-l~layL~~~~-~~~~~AL~~~ekll~~~P~---n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~-~~~~  238 (822)
T PRK14574        165 RDPTVQNY-MTLSYLNRAT-DRNYDALQASSEAVRLAPT---SEEVLKNHLEILQRNRIVEPALRLAKENPNLVS-AEHY  238 (822)
T ss_pred             cCcchHHH-HHHHHHHHhc-chHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccC-HHHH
Confidence            99974332 4444443333 4555599999999998886   567888888888888877777766554422111 1111


Q ss_pred             HHHHHHHHHHHHHHhh-hhhhhh-hHHHHHHhhhccccccCccchhhhHHHHhhcC-Cc--hhhHHHHHHHHHHHHHHHH
Q 001619          182 YYDSFKKLAGAWKEEL-ECESDS-AMEFQSELVLEGEVPAYYKDDETSSVIKDLLD-PS--VDLVRSKAIQKYRFIGEQI  256 (1043)
Q Consensus       182 ~~~~y~~~~~~~~e~l-~~~~~~-~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~-~~--~~~e~ar~i~~~~~~~~~~  256 (1043)
                      .+-........+.-+. ..+... ....+...+         .  +....+..|-. +.  ....+++.-.-+.......
T Consensus       239 ~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al---------a--~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r  307 (822)
T PRK14574        239 RQLERDAAAEQVRMAVLPTRSETERFDIADKAL---------A--DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQ  307 (822)
T ss_pred             HHHHHHHHHHHHhhcccccccchhhHHHHHHHH---------H--HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhh
Confidence            1111111111110000 000000 000000000         0  00011111111 00  0111111100000000111


Q ss_pred             HHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCC----CcHHH--HHHHH
Q 001619          257 YKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCA----DYPEF--WMRYV  330 (1043)
Q Consensus       257 y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~----~~~~L--Wl~yA  330 (1043)
                      +      ...+..||.+-..     ...-|.-+..|.  ++.+...+.+++|..+|++++...+    ....+  -..+.
T Consensus       308 ~------~~vi~~y~~l~~~-----~~~~P~y~~~a~--adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~  374 (822)
T PRK14574        308 T------ADLIKEYEAMEAE-----GYKMPDYARRWA--ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLY  374 (822)
T ss_pred             H------HHHHHHHHHhhhc-----CCCCCHHHHHHH--HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHH
Confidence            1      1222333332210     011256666664  5555568999999999999987542    22222  12222


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHHhcc------------cc---hHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHH
Q 001619          331 DFMESKGGREIASYALDRATQIFLKR------------LP---VIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEK  395 (1043)
Q Consensus       331 k~~e~~g~~e~Ar~ilerA~~~~~~~------------~p---~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~l  395 (1043)
                      --+...+++++|+.++++.... .|.            +|   .....-|....-.|++.+|.+++++.+.. .|....+
T Consensus       375 yA~ld~e~~~~A~~~l~~~~~~-~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l  452 (822)
T PRK14574        375 YSLNESEQLDKAYQFAVNYSEQ-TPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNL  452 (822)
T ss_pred             HHHHhcccHHHHHHHHHHHHhc-CCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHH
Confidence            2334568999999999998873 220            11   23333466677899999999999999864 6777899


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCC
Q 001619          396 VTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRP  475 (1043)
Q Consensus       396 w~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~~~p  475 (1043)
                      ++.++++++..|...+|+.+|+.+..+      .|....+....+       .... ..|+   ...|+.+++..+...|
T Consensus       453 ~~~~A~v~~~Rg~p~~A~~~~k~a~~l------~P~~~~~~~~~~-------~~al-~l~e---~~~A~~~~~~l~~~~P  515 (822)
T PRK14574        453 RIALASIYLARDLPRKAEQELKAVESL------APRSLILERAQA-------ETAM-ALQE---WHQMELLTDDVISRSP  515 (822)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhh------CCccHHHHHHHH-------HHHH-hhhh---HHHHHHHHHHHHhhCC
Confidence            999999999999999999999887776      554332221111       1111 1132   4568888988888888


Q ss_pred             Cc
Q 001619          476 DV  477 (1043)
Q Consensus       476 ~~  477 (1043)
                      ++
T Consensus       516 e~  517 (822)
T PRK14574        516 ED  517 (822)
T ss_pred             Cc
Confidence            87

>PRK12370 invasion protein regulator; Provisional

Probab=99.20  E-value=4.7e-09  Score=128.13  Aligned_cols=138  Identities=11%  Similarity=-0.052  Sum_probs=74.2

Q ss_pred             CCCCHHHHHHHHHHHH---hcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHH
Q 001619           33 GSLDFDEWTSLLSEIE---NSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKAR---------LCSIDKVVEVFERAV  100 (1043)
Q Consensus        33 nP~d~~~W~~~i~~le---~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~---------~~~~e~a~~lfeRAL  100 (1043)
                      ++.++++|..|+.-..   ...+++.+++...|+++++..|.+...|...+.....         .+++++|...+++|+
T Consensus       252 ~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al  331 (553)
T PRK12370        252 ELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT  331 (553)
T ss_pred             CCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence            4455555555544221   1112344556666666666666666655544433221         122556666666666


Q ss_pred             HhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcC
Q 001619          101 QSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRF  174 (1043)
Q Consensus       101 ~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~  174 (1043)
                      +..|.+...|..++..+... ++.++|...|++|++..|.   +...|..+.......|+++.|...|++++.+
T Consensus       332 ~ldP~~~~a~~~lg~~~~~~-g~~~~A~~~~~~Al~l~P~---~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l  401 (553)
T PRK12370        332 ELDHNNPQALGLLGLINTIH-SEYIVGSLLFKQANLLSPI---SADIKYYYGWNLFMAGQLEEALQTINECLKL  401 (553)
T ss_pred             hcCCCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            66666666666665555544 5566666666666665554   3345555555555555555555555555553

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.18  E-value=8.7e-08  Score=107.66  Aligned_cols=170  Identities=9%  Similarity=0.038  Sum_probs=132.5

Q ss_pred             CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHH
Q 001619          284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLF  363 (1043)
Q Consensus       284 ~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~  363 (1043)
                      ++|++.++|+.+..+..-.++++.+..-|++|+...|.+.--++..+-.+.+.+.++++...|+.|.+. .|.|++++-.
T Consensus       389 ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~  467 (606)
T KOG0547|consen  389 LDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNL  467 (606)
T ss_pred             cCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHH
Confidence            788899999999887766788999999999999998888877887777777888999999999999988 6789999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHhhhhCCChh------hHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHH
Q 001619          364 NARYKEQIGDTSAARAAFPESYIDSDSR------FIE-KVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLY  436 (1043)
Q Consensus       364 ~A~~E~~~g~~d~Ar~ll~ral~~~~~~------~~~-lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~  436 (1043)
                      +|+.+...++|+.|.+-|++|+.. .++      .+. +.-+.+-+.+-.++++.|..++.+|+++      +|.+...|
T Consensus       468 fAeiLtDqqqFd~A~k~YD~ai~L-E~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~------Dpkce~A~  540 (606)
T KOG0547|consen  468 FAEILTDQQQFDKAVKQYDKAIEL-EPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIEL------DPKCEQAY  540 (606)
T ss_pred             HHHHHhhHHhHHHHHHHHHHHHhh-ccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHcc------CchHHHHH
Confidence            999999999999999999999852 222      111 2222222222348999999999999997      77655433


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhh
Q 001619          437 VQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALY  472 (1043)
Q Consensus       437 ~~~ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~  472 (1043)
                              +.+..|+...|.   +++|-.+||+++.
T Consensus       541 --------~tlaq~~lQ~~~---i~eAielFEksa~  565 (606)
T KOG0547|consen  541 --------ETLAQFELQRGK---IDEAIELFEKSAQ  565 (606)
T ss_pred             --------HHHHHHHHHHhh---HHHHHHHHHHHHH
Confidence                    555666666565   6788889988775

>PRK12370 invasion protein regulator; Provisional

Probab=99.18  E-value=1e-08  Score=125.24  Aligned_cols=140  Identities=15%  Similarity=0.021  Sum_probs=101.2

Q ss_pred             CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHH
Q 001619          284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLF  363 (1043)
Q Consensus       284 ~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~  363 (1043)
                      ++|++...|..++..+...|++++++..|++|+...|.....+...+..+...|++++|...+++++....++.+..+..
T Consensus       367 l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~  446 (553)
T PRK12370        367 LSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSM  446 (553)
T ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHH
Confidence            34666667777777777789999999999999999888766544444444457889999999999887645677878888


Q ss_pred             HHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 001619          364 NARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQ  426 (1043)
Q Consensus       364 ~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~  426 (1043)
                      .+.+....|++++|+..+.+.... .+.....+...+......|  ++|+..+++.++...+.
T Consensus       447 la~~l~~~G~~~eA~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~  506 (553)
T PRK12370        447 QVMFLSLKGKHELARKLTKEISTQ-EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI  506 (553)
T ss_pred             HHHHHHhCCCHHHHHHHHHHhhhc-cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence            888888999999999999887653 3333333333333333334  58888888877764433

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.17  E-value=6.4e-07  Score=108.18  Aligned_cols=322  Identities=18%  Similarity=0.164  Sum_probs=213.7

Q ss_pred             CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHH
Q 001619           53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLC---SIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRR  129 (1043)
Q Consensus        53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~---~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~  129 (1043)
                      +..+.++..|+|+|..+|.++.....+..+.....   .+.++..++.+|....+.++.+-..++.+..-. +++..+-.
T Consensus       213 ~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK-~dy~~v~~  291 (1018)
T KOG2002|consen  213 GMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFK-KDYERVWH  291 (1018)
T ss_pred             cchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhc-ccHHHHHH
Confidence            56678999999999999999999998888776553   477899999999999999999999999888777 89999999


Q ss_pred             HHHHHHHhcCCC-CCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCcc-------HHHHHHHHHHHHHHHHHhhhhhh
Q 001619          130 LFKRALSFVGKD-YLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKK-------LHHYYDSFKKLAGAWKEELECES  201 (1043)
Q Consensus       130 lferAL~~lp~~-~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~-------l~~~~~~y~~~~~~~~e~l~~~~  201 (1043)
                      +.+-|+...-.. ..++.. --.++-....|+++.|.+.|-.+++....+       +-..+.   . .+.+.++     
T Consensus       292 la~~ai~~t~~~~~~aes~-Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i---~-~~dle~s-----  361 (1018)
T KOG2002|consen  292 LAEHAIKNTENKSIKAESF-YQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI---K-RGDLEES-----  361 (1018)
T ss_pred             HHHHHHHhhhhhHHHHHHH-HHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHH---H-hchHHHH-----
Confidence            999998765211 011112 222344456799999999999998743332       211111   0 0001100     


Q ss_pred             hhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 001619          202 DSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHV  281 (1043)
Q Consensus       202 ~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~  281 (1043)
                          ..+++.+...    .-+..+...++.             .+|....      ..............++++      
T Consensus       362 ----~~~fEkv~k~----~p~~~etm~iLG-------------~Lya~~~------~~~~~~d~a~~~l~K~~~------  408 (1018)
T KOG2002|consen  362 ----KFCFEKVLKQ----LPNNYETMKILG-------------CLYAHSA------KKQEKRDKASNVLGKVLE------  408 (1018)
T ss_pred             ----HHHHHHHHHh----CcchHHHHHHHH-------------hHHHhhh------hhhHHHHHHHHHHHHHHh------
Confidence                1111111100    000111111111             1121100      111122333344444443      


Q ss_pred             CCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhcc-----CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc-
Q 001619          282 KPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIP-----CADYPEFWMRYVDFMESKGGREIASYALDRATQIFLK-  355 (1043)
Q Consensus       282 ~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~-----~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~-  355 (1043)
                        ..|.+.+.|+.++.+++ .+++-....+|.+|+..     ..-.+++--+.+-+.-..|++++|+..|.+|.....+ 
T Consensus       409 --~~~~d~~a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~  485 (1018)
T KOG2002|consen  409 --QTPVDSEAWLELAQLLE-QTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV  485 (1018)
T ss_pred             --cccccHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh
Confidence              34778899999998887 45655568899999832     2333455556677777889999999999999877321 


Q ss_pred             ---cc---chH--HHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619          356 ---RL---PVI--HLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET  422 (1043)
Q Consensus       356 ---~~---p~i--wl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~  422 (1043)
                         +.   ..|  -...|.+++..++++.|-++|...++. .|.++.-+++.+.|.+..+++..|...+..++..
T Consensus       486 ~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke-hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~  559 (1018)
T KOG2002|consen  486 ANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE-HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI  559 (1018)
T ss_pred             cCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc
Confidence               11   222  445588999999999999999999975 5778888888888888889999999999999986

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=99.16  E-value=8.6e-10  Score=124.88  Aligned_cols=152  Identities=14%  Similarity=0.201  Sum_probs=127.4

Q ss_pred             cHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC----------CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 001619           22 GKQGLEEFIAEGSLDFDEWTSLLSEIENSCP----------DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDK   91 (1043)
Q Consensus        22 ~~~~le~~i~~nP~d~~~W~~~i~~le~~~~----------~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~   91 (1043)
                      +...|.+.|+.||.|++.|+.|+++-.....          ...+..-.||+|||+.+|.+.+||+.|++...+..+.++
T Consensus         4 r~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~   83 (321)
T PF08424_consen    4 RTAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEK   83 (321)
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHH
Confidence            3568999999999999999999997654311          113456789999999999999999999999988888999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHhcCCCCC---------------cHHHHHHHHHH
Q 001619           92 VVEVFERAVQSATYSVDVWFHYCSLSMSTF--EDPNDVRRLFKRALSFVGKDYL---------------CHTMWDKYIEF  154 (1043)
Q Consensus        92 a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~--~~~e~ar~lferAL~~lp~~~~---------------s~~IW~~yi~f  154 (1043)
                      +.+.++++|..+|.++.||..|++|.....  .+++.++.+|.++|+.+.....               -..|...++.|
T Consensus        84 l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~f  163 (321)
T PF08424_consen   84 LAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRF  163 (321)
T ss_pred             HHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998753  3688999999999988743211               12467777888


Q ss_pred             HHHhhhhhhHHHHHHHHhc
Q 001619          155 EISQQRWSSLAQIFVQTLR  173 (1043)
Q Consensus       155 e~~~~~~e~a~~iy~raL~  173 (1043)
                      +...|-.+.|..+++-.|.
T Consensus       164 l~~aG~~E~Ava~~Qa~lE  182 (321)
T PF08424_consen  164 LRQAGYTERAVALWQALLE  182 (321)
T ss_pred             HHHCCchHHHHHHHHHHHH
Confidence            8899999999999988865

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.16  E-value=9.5e-09  Score=119.69  Aligned_cols=287  Identities=12%  Similarity=0.119  Sum_probs=212.2

Q ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHH
Q 001619           54 DIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKR  133 (1043)
Q Consensus        54 ~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lfer  133 (1043)
                      ...++...|++.-.+.++..=.-....+...+.+++++++++|+++-...|.-++=-.-|-..++.. .+ +-+...+-+
T Consensus       334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL-q~-~v~Ls~Laq  411 (638)
T KOG1126|consen  334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL-QD-EVALSYLAQ  411 (638)
T ss_pred             HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH-Hh-hHHHHHHHH
Confidence            4567778899966777776633334556667778999999999999998887665444444444433 11 112233322


Q ss_pred             HHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhh
Q 001619          134 ALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVL  213 (1043)
Q Consensus       134 AL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~  213 (1043)
                      -  .+.++..++.-|-+...+..-.++.++|.+.|+|++.+...-.+.    |.. ++.                     
T Consensus       412 ~--Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYa----yTL-lGh---------------------  463 (638)
T KOG1126|consen  412 D--LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYA----YTL-LGH---------------------  463 (638)
T ss_pred             H--HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchh----hhh-cCC---------------------
Confidence            2  233444588999999999988889999999999999874321110    000 000                     


Q ss_pred             ccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHH
Q 001619          214 EGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWH  293 (1043)
Q Consensus       214 ~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~  293 (1043)
                                 |.                         +..      .+.+.+...|-.+|+        .+|..+.+|.
T Consensus       464 -----------E~-------------------------~~~------ee~d~a~~~fr~Al~--------~~~rhYnAwY  493 (638)
T KOG1126|consen  464 -----------ES-------------------------IAT------EEFDKAMKSFRKALG--------VDPRHYNAWY  493 (638)
T ss_pred             -----------hh-------------------------hhh------HHHHhHHHHHHhhhc--------CCchhhHHHH
Confidence                       00                         000      112223344555554        6799999999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCC
Q 001619          294 DYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGD  373 (1043)
Q Consensus       294 ~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~  373 (1043)
                      -+...+.+.+.++.|..-|++|+..+|....|-.-+..++.+.|..|+|..+|++|+.+ .+.++..-+..+.+....++
T Consensus       494 GlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l-d~kn~l~~~~~~~il~~~~~  572 (638)
T KOG1126|consen  494 GLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL-DPKNPLCKYHRASILFSLGR  572 (638)
T ss_pred             hhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc-CCCCchhHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999999999999999999999999977 66677666677888889999


Q ss_pred             HHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619          374 TSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET  422 (1043)
Q Consensus       374 ~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~  422 (1043)
                      +++|...|+..- ..+|+-.-++...+..-+++|+.+.|..-|-=|+++
T Consensus       573 ~~eal~~LEeLk-~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l  620 (638)
T KOG1126|consen  573 YVEALQELEELK-ELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL  620 (638)
T ss_pred             hHHHHHHHHHHH-HhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence            999999999875 456766677888888999999999999999888886

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.13  E-value=2.4e-08  Score=105.98  Aligned_cols=204  Identities=15%  Similarity=0.081  Sum_probs=160.0

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHH
Q 001619          288 QLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARY  367 (1043)
Q Consensus       288 ~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~  367 (1043)
                      ....|...+..+...|+++.+...|++++...|.....|...+..+...|+.+.|...|++++.. .+..+.+|..++.+
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~  108 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL-NPNNGDVLNNYGTF  108 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHH
Confidence            34667777777778999999999999999999999999999999999999999999999999987 56677789999999


Q ss_pred             HHHhCCHHHHHHHHHhhhhCCC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHH
Q 001619          368 KEQIGDTSAARAAFPESYIDSD-SRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTE  446 (1043)
Q Consensus       368 E~~~g~~d~Ar~ll~ral~~~~-~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~  446 (1043)
                      ....|++++|.+.|.+++.... +.....|...+......|+++.|...|++++..      .|..+..|..++.     
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~la~-----  177 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI------DPQRPESLLELAE-----  177 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CcCChHHHHHHHH-----
Confidence            9999999999999999986422 233557778888888999999999999999997      4444544433322     


Q ss_pred             HHHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001619          447 LIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFP  518 (1043)
Q Consensus       447 ~~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~~p  518 (1043)
                         +....|.   .+.|..++++++...|..        . ..+..........|+.+.+....+++.+.+|
T Consensus       178 ---~~~~~~~---~~~A~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  234 (234)
T TIGR02521       178 ---LYYLRGQ---YKDARAYLERYQQTYNQT--------A-ESLWLGIRIARALGDVAAAQRYGAQLQKLFP  234 (234)
T ss_pred             ---HHHHcCC---HHHHHHHHHHHHHhCCCC--------H-HHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence               2222343   567899999998864443        2 2333556666778999999988887766543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=4.7e-08  Score=109.19  Aligned_cols=280  Identities=13%  Similarity=0.111  Sum_probs=189.9

Q ss_pred             cHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHH----HH
Q 001619           54 DIEMIGLVYDSFLAE-FPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPND----VR  128 (1043)
Q Consensus        54 ~~~~~r~vyeraL~~-~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~----ar  128 (1043)
                      ..+.+..-+++.+.. +|.+..+=...+.......+++.|..+|+..++.+|+-++=--.|-+.+.-. .+-.+    |.
T Consensus       242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~-~~~skLs~LA~  320 (559)
T KOG1155|consen  242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK-NDKSKLSYLAQ  320 (559)
T ss_pred             HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH-hhhHHHHHHHH
Confidence            455667778888888 9988777666666666677999999999999999998776555555544322 12111    22


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCcc--HHHHHH-HHHHHHHHHHHhhhhhhhhhH
Q 001619          129 RLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKK--LHHYYD-SFKKLAGAWKEELECESDSAM  205 (1043)
Q Consensus       129 ~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~--l~~~~~-~y~~~~~~~~e~l~~~~~~~~  205 (1043)
                      .+++    .--......-|-   +.+..-.+..++|...|+|+|++.+.-  .|...- .|.+                 
T Consensus       321 ~v~~----idKyR~ETCCiI---aNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvE-----------------  376 (559)
T KOG1155|consen  321 NVSN----IDKYRPETCCII---ANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVE-----------------  376 (559)
T ss_pred             HHHH----hccCCccceeee---hhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHH-----------------
Confidence            2221    111111111121   233333456788999999999975432  121110 1111                 


Q ss_pred             HHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCC
Q 001619          206 EFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLD  285 (1043)
Q Consensus       206 ~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~  285 (1043)
                                                                            .+....++..|.++|+        ++
T Consensus       377 ------------------------------------------------------mKNt~AAi~sYRrAvd--------i~  394 (559)
T KOG1155|consen  377 ------------------------------------------------------MKNTHAAIESYRRAVD--------IN  394 (559)
T ss_pred             ------------------------------------------------------hcccHHHHHHHHHHHh--------cC
Confidence                                                                  0011112233444443        67


Q ss_pred             hHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHH
Q 001619          286 DIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNA  365 (1043)
Q Consensus       286 p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A  365 (1043)
                      |.+...|.-+...+...+-+.=+...|.||+..-|+...+|...++.|++.+++++|.+.|.||+.. ......+....|
T Consensus       395 p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~-~dte~~~l~~La  473 (559)
T KOG1155|consen  395 PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL-GDTEGSALVRLA  473 (559)
T ss_pred             chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc-cccchHHHHHHH
Confidence            9999999999998888888888999999999999999999999999999999999999999999875 322335777889


Q ss_pred             HHHHHhCCHHHHHHHHHhhhhC------CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001619          366 RYKEQIGDTSAARAAFPESYID------SDSRFIEKVTFKANMERRLGNFVAACDTYKEALE  421 (1043)
Q Consensus       366 ~~E~~~g~~d~Ar~ll~ral~~------~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale  421 (1043)
                      ++.++.++.++|...|++.+..      ..+...+.....+.++.+.+++++|-....+++.
T Consensus       474 kLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~  535 (559)
T KOG1155|consen  474 KLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK  535 (559)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence            9999999999999999988762      2333445455567788888888887765544444

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.06  E-value=4.3e-08  Score=101.27  Aligned_cols=196  Identities=17%  Similarity=0.163  Sum_probs=156.6

Q ss_pred             HHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHH
Q 001619          300 EKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARA  379 (1043)
Q Consensus       300 ~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~  379 (1043)
                      ...|++..++..+|+||...|++...|...|.+|...|..+.|+..|++|+.. .|+.-+|.-.|+.|+-..|.++.|-.
T Consensus        46 L~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl-~p~~GdVLNNYG~FLC~qg~~~eA~q  124 (250)
T COG3063          46 LQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL-APNNGDVLNNYGAFLCAQGRPEEAMQ  124 (250)
T ss_pred             HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-CCCccchhhhhhHHHHhCCChHHHHH
Confidence            35899999999999999999999999999999999999999999999999988 77788899999999999999999999


Q ss_pred             HHHhhhhCCC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 001619          380 AFPESYIDSD-SRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRS  458 (1043)
Q Consensus       380 ll~ral~~~~-~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~  458 (1043)
                      -|++|+..+. +.-.+.|....-.-.+.|.++.|++.|+++|+.      +|.++...+..++..|        ..|+  
T Consensus       125 ~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~------dp~~~~~~l~~a~~~~--------~~~~--  188 (250)
T COG3063         125 QFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL------DPQFPPALLELARLHY--------KAGD--  188 (250)
T ss_pred             HHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh------CcCCChHHHHHHHHHH--------hccc--
Confidence            9999997543 122345555555556789999999999999998      6666654444444333        2233  


Q ss_pred             hHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Q 001619          459 HISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVR  522 (1043)
Q Consensus       459 ~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~~p~~~~  522 (1043)
                       .-.||..+++.....+..        .+.+| +=+++++..|+.+.+-+--.+.-+.||.+..
T Consensus       189 -y~~Ar~~~~~~~~~~~~~--------A~sL~-L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e  242 (250)
T COG3063         189 -YAPARLYLERYQQRGGAQ--------AESLL-LGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE  242 (250)
T ss_pred             -chHHHHHHHHHHhccccc--------HHHHH-HHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence             336888998877644432        23333 4567889999999999999999999998655

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.03  E-value=4.7e-08  Score=109.79  Aligned_cols=148  Identities=9%  Similarity=-0.069  Sum_probs=111.9

Q ss_pred             CCCccHHHHHHHHHhCCCC----HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 001619           18 PVGFGKQGLEEFIAEGSLD----FDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVV   93 (1043)
Q Consensus        18 ~~~~~~~~le~~i~~nP~d----~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~   93 (1043)
                      ..|..+..+.+.|.+.|.+    ...|......+...  +..+.+...|+++++.+|.....|..++......|++++|.
T Consensus        41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~--g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSL--GLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            3345667788888766644    44577776666666  88888999999999999999999999998888889999999


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHh
Q 001619           94 EVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTL  172 (1043)
Q Consensus        94 ~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL  172 (1043)
                      ..|++|++..|.+...|...+..+... +.++.|.+.|++++..-|.+.. ..+|...   ....++.+.|...|.+++
T Consensus       119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~-g~~~eA~~~~~~al~~~P~~~~-~~~~~~l---~~~~~~~~~A~~~l~~~~  192 (296)
T PRK11189        119 EAFDSVLELDPTYNYAYLNRGIALYYG-GRYELAQDDLLAFYQDDPNDPY-RALWLYL---AESKLDPKQAKENLKQRY  192 (296)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCHH-HHHHHHH---HHccCCHHHHHHHHHHHH
Confidence            999999999999999998888877776 8899999999999987776431 2344322   223445666666665544

>TIGR00540 hemY_coli hemY protein

Probab=99.00  E-value=3e-07  Score=108.22  Aligned_cols=279  Identities=8%  Similarity=-0.103  Sum_probs=185.3

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001619           24 QGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCY-GYWRKYADHKARLCSIDKVVEVFERAVQS  102 (1043)
Q Consensus        24 ~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~-~lW~~y~~~e~~~~~~e~a~~lfeRAL~~  102 (1043)
                      ..+.+.....|...-.++-.++.....  ++.+.+...|+++++.+|.+. .+...++.+....|+++.|...|++.++.
T Consensus       105 ~~l~~~~~~~~~~~~~~llaA~aa~~~--g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~  182 (409)
T TIGR00540       105 KLIAKNADHAAEPVLNLIKAAEAAQQR--GDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEM  182 (409)
T ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            345556666676666677666666655  899999999999999999985 67887899999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcH-----HHHHHHHHHHHHhhhhhhHHHHHHHHhc-CCC
Q 001619          103 ATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCH-----TMWDKYIEFEISQQRWSSLAQIFVQTLR-FPS  176 (1043)
Q Consensus       103 ~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~-----~IW~~yi~fe~~~~~~e~a~~iy~raL~-~p~  176 (1043)
                      .|.++.++..++...... ++.+.+.+++++.++....+....     ..|...+.-    +..+.....+.++.. .|.
T Consensus       183 ~P~~~~~l~ll~~~~~~~-~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~----~~~~~~~~~L~~~~~~~p~  257 (409)
T TIGR00540       183 APRHKEVLKLAEEAYIRS-GAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE----AMADEGIDGLLNWWKNQPR  257 (409)
T ss_pred             CCCCHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH----HHHhcCHHHHHHHHHHCCH
Confidence            999999999999999888 899999999999988633221100     111111100    001111111111111 110


Q ss_pred             ccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHH
Q 001619          177 KKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQI  256 (1043)
Q Consensus       177 ~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~  256 (1043)
                      .                                          ..++.+....+...                       
T Consensus       258 ~------------------------------------------~~~~~~l~~~~a~~-----------------------  272 (409)
T TIGR00540       258 H------------------------------------------RRHNIALKIALAEH-----------------------  272 (409)
T ss_pred             H------------------------------------------HhCCHHHHHHHHHH-----------------------
Confidence            0                                          00000000000000                       


Q ss_pred             HHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHH----HHHHHHHHHHHcCChHHHHHHHHHHhccCCCcH--HHHHHHH
Q 001619          257 YKEASQLDEKINCFENLIRRPYFHVKPLDDIQLK----NWHDYLSFAEKQGDFDWVVKLYERCLIPCADYP--EFWMRYV  330 (1043)
Q Consensus       257 y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~----~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~--~LWl~yA  330 (1043)
                      +....+...+...+++++++        .|.+..    ....++.+.  .++.+.+...++++++..|+.+  .+...++
T Consensus       273 l~~~g~~~~A~~~l~~~l~~--------~pd~~~~~~~~l~~~~~l~--~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg  342 (409)
T TIGR00540       273 LIDCDDHDSAQEIIFDGLKK--------LGDDRAISLPLCLPIPRLK--PEDNEKLEKLIEKQAKNVDDKPKCCINRALG  342 (409)
T ss_pred             HHHCCChHHHHHHHHHHHhh--------CCCcccchhHHHHHhhhcC--CCChHHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence            11111122233344455542        233332    333333332  4678899999999999999999  8899999


Q ss_pred             HHHHHcCChHHHHHHHHH--HHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhh
Q 001619          331 DFMESKGGREIASYALDR--ATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYI  386 (1043)
Q Consensus       331 k~~e~~g~~e~Ar~iler--A~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~  386 (1043)
                      ..+.+.|++++|+..|++  ++.. .| .+.++..++.+.+..|+.++|+++|++++.
T Consensus       343 ~l~~~~~~~~~A~~~le~a~a~~~-~p-~~~~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       343 QLLMKHGEFIEAADAFKNVAACKE-QL-DANDLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             HHHHHcccHHHHHHHHHHhHHhhc-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999999995  5444 33 334677999999999999999999999875

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.99  E-value=1.3e-06  Score=102.39  Aligned_cols=202  Identities=13%  Similarity=0.094  Sum_probs=127.2

Q ss_pred             CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHH--------HHHHHHHHHHHcCChHHHHHHHHHHHHHHhc
Q 001619          284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPE--------FWMRYVDFMESKGGREIASYALDRATQIFLK  355 (1043)
Q Consensus       284 ~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~--------LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~  355 (1043)
                      .+|++.....-.+..+...|+.+.+..+|++..+.......        .|.....-.....+.+....+++...+. .+
T Consensus       182 ~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~  260 (398)
T PRK10747        182 VAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TR  260 (398)
T ss_pred             cCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-Hh
Confidence            34666666666666666677777777777777765433222        2222222222223333444444333222 34


Q ss_pred             ccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHH
Q 001619          356 RLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLL  435 (1043)
Q Consensus       356 ~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l  435 (1043)
                      +.+.+++.++......|+.++|.++++++++. .+ ...+...|+.+.  .|+.+++.+.+++.++.      +|..+.+
T Consensus       261 ~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~-~~~l~~l~~~l~--~~~~~~al~~~e~~lk~------~P~~~~l  330 (398)
T PRK10747        261 HQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QY-DERLVLLIPRLK--TNNPEQLEKVLRQQIKQ------HGDTPLL  330 (398)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CC-CHHHHHHHhhcc--CCChHHHHHHHHHHHhh------CCCCHHH
Confidence            56778888888888888888888888888763 22 345555665553  37888888888888876      6666666


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001619          436 YVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIK  515 (1043)
Q Consensus       436 ~~~~ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k  515 (1043)
                      ++.+++..        ...+.   .++||..|++++...|+.          ..+..+....+..|..+.|..+|.+++.
T Consensus       331 ~l~lgrl~--------~~~~~---~~~A~~~le~al~~~P~~----------~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        331 WSTLGQLL--------MKHGE---WQEASLAFRAALKQRPDA----------YDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             HHHHHHHH--------HHCCC---HHHHHHHHHHHHhcCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            54444322        23333   567888888888877775          2345666677778888888888888887


Q ss_pred             hC
Q 001619          516 LF  517 (1043)
Q Consensus       516 ~~  517 (1043)
                      .+
T Consensus       390 ~~  391 (398)
T PRK10747        390 LT  391 (398)
T ss_pred             hh
Confidence            65

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.95  E-value=1.3e-05  Score=93.51  Aligned_cols=349  Identities=12%  Similarity=0.116  Sum_probs=204.6

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001619           23 KQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQS  102 (1043)
Q Consensus        23 ~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~  102 (1043)
                      .+.....++.++.|.-+|-.+.-..+..  .+.+++.+-|+.||...|++..+|+.+.-+-...++++-....--+.|..
T Consensus        61 ~~~vr~glr~d~~S~vCwHv~gl~~R~d--K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql  138 (700)
T KOG1156|consen   61 YELVRLGLRNDLKSHVCWHVLGLLQRSD--KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL  138 (700)
T ss_pred             HHHHHHHhccCcccchhHHHHHHHHhhh--hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence            3445567778888888888876655543  56788888899999999999999988888887778888888888888888


Q ss_pred             cCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCC---------------------------------cHHHHH
Q 001619          103 ATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYL---------------------------------CHTMWD  149 (1043)
Q Consensus       103 ~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~---------------------------------s~~IW~  149 (1043)
                      .|..-.-|+.|+.-.... ++...|..+++.-.........                                 ...|-.
T Consensus       139 ~~~~ra~w~~~Avs~~L~-g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D  217 (700)
T KOG1156|consen  139 RPSQRASWIGFAVAQHLL-GEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD  217 (700)
T ss_pred             hhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH
Confidence            888888888887543333 3333333333332222210000                                 111111


Q ss_pred             H------HHHHHHHhhhhhhHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhcccccc----
Q 001619          150 K------YIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPA----  219 (1043)
Q Consensus       150 ~------yi~fe~~~~~~e~a~~iy~raL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~----  219 (1043)
                      .      -++++...++.+.|..+|++.|.-.+. .+.++..+....+.+...+.... ...+...+...+.....    
T Consensus       218 kla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPd-n~~Yy~~l~~~lgk~~d~~~~lk-~ly~~ls~~y~r~e~p~Rlpl  295 (700)
T KOG1156|consen  218 KLAFEETKADLLMKLGQLEEAVKVYRRLLERNPD-NLDYYEGLEKALGKIKDMLEALK-ALYAILSEKYPRHECPRRLPL  295 (700)
T ss_pred             HHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCch-hHHHHHHHHHHHHHHhhhHHHHH-HHHHHHhhcCcccccchhccH
Confidence            1      123334457788999999988764333 34555555554432111111000 00000111111110000    


Q ss_pred             -CccchhhhHHHHhhc----CCc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcc-cCCC---CCCCChH
Q 001619          220 -YYKDDETSSVIKDLL----DPS--VDLVRSKAIQKYRFIGEQIYKEASQLDEK-INCFENLIRR-PYFH---VKPLDDI  287 (1043)
Q Consensus       220 -~~~~~e~~~~i~~~~----~~~--~~~e~ar~i~~~~~~~~~~y~~a~~~~~~-~~~fE~~i~r-~~~~---~~~~~p~  287 (1043)
                       -..+++....+..|+    ..+  .-|...+.+|+...        ...+.++ ...|...+.. .++.   .....|-
T Consensus       296 svl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~--------k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~P  367 (700)
T KOG1156|consen  296 SVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPE--------KVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPP  367 (700)
T ss_pred             HHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchh--------HhHHHHHHHHHHHhhcccccCCCcccccccCCc
Confidence             001112222222221    110  11222223332210        0011111 1223333322 1221   1113455


Q ss_pred             HHHHHHHH--HHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHH--H
Q 001619          288 QLKNWHDY--LSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHL--F  363 (1043)
Q Consensus       288 ~~~~W~~y--i~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl--~  363 (1043)
                      ..-+|..|  +.-....|+++.+....+.|+..+|...++++--|+.+-..|+++.|...+++|..+   +.++..+  -
T Consensus       368 ttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el---D~aDR~INsK  444 (700)
T KOG1156|consen  368 TTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL---DTADRAINSK  444 (700)
T ss_pred             hHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---cchhHHHHHH
Confidence            56788876  333446799999999999999999999999999999999999999999999999887   5555555  5


Q ss_pred             HHHHHHHhCCHHHHHHHHHhhhhC
Q 001619          364 NARYKEQIGDTSAARAAFPESYID  387 (1043)
Q Consensus       364 ~A~~E~~~g~~d~Ar~ll~ral~~  387 (1043)
                      .|++..+.++++.|.++..+.+..
T Consensus       445 cAKYmLrAn~i~eA~~~~skFTr~  468 (700)
T KOG1156|consen  445 CAKYMLRANEIEEAEEVLSKFTRE  468 (700)
T ss_pred             HHHHHHHccccHHHHHHHHHhhhc
Confidence            899999999999999998877653

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.93  E-value=4e-07  Score=102.33  Aligned_cols=117  Identities=10%  Similarity=-0.054  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHH
Q 001619           56 EMIGLVYDSFLAEFPLC----YGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLF  131 (1043)
Q Consensus        56 ~~~r~vyeraL~~~P~s----~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lf  131 (1043)
                      +....-+.++|...|.+    ...|...+......|++++|+..|++|+...|.++..|...+.+.... ++++.|...|
T Consensus        43 e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~-g~~~~A~~~~  121 (296)
T PRK11189         43 EVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQA-GNFDAAYEAF  121 (296)
T ss_pred             HHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-CCHHHHHHHH
Confidence            33444566677655543    456888888888999999999999999999999999999999988888 9999999999


Q ss_pred             HHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCC
Q 001619          132 KRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPS  176 (1043)
Q Consensus       132 erAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~  176 (1043)
                      ++|++.-|.   ....|..........|+++.|.+.|++++...+
T Consensus       122 ~~Al~l~P~---~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P  163 (296)
T PRK11189        122 DSVLELDPT---YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP  163 (296)
T ss_pred             HHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            999997775   446777777666677888999999888887533

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.88  E-value=2.5e-05  Score=91.20  Aligned_cols=354  Identities=12%  Similarity=0.100  Sum_probs=203.1

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 001619           25 GLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSAT  104 (1043)
Q Consensus        25 ~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P  104 (1043)
                      .++..|+.+|...+.---..=.+-..  |+.+++-...+++++..+.|.=-|.-+.-+.....++++|.++|..||...|
T Consensus        29 ~~~~iL~k~~eHgeslAmkGL~L~~l--g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~  106 (700)
T KOG1156|consen   29 LIKQILKKFPEHGESLAMKGLTLNCL--GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK  106 (700)
T ss_pred             HHHHHHHhCCccchhHHhccchhhcc--cchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC
Confidence            34455556666555433321112223  7778888888999999999999999999988888899999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCC---CccHHH
Q 001619          105 YSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFP---SKKLHH  181 (1043)
Q Consensus       105 ~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p---~~~l~~  181 (1043)
                      ++..||.+.+-+-... ++++-...+-.+-|...|.   .+.-|..|+.-..-.|++..+..|.+...+..   ....  
T Consensus       107 dN~qilrDlslLQ~Qm-Rd~~~~~~tr~~LLql~~~---~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~--  180 (700)
T KOG1156|consen  107 DNLQILRDLSLLQIQM-RDYEGYLETRNQLLQLRPS---QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKE--  180 (700)
T ss_pred             CcHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHH--
Confidence            9999999887665544 6777666666666666554   45789888876555677777777776664321   1110  


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 001619          182 YYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEAS  261 (1043)
Q Consensus       182 ~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~  261 (1043)
                         .|+..+-.+.+.            ...+..|.+         ...+....+..+.+.   +-..+.......+.+..
T Consensus       181 ---~~e~se~~Ly~n------------~i~~E~g~~---------q~ale~L~~~e~~i~---Dkla~~e~ka~l~~kl~  233 (700)
T KOG1156|consen  181 ---DYEHSELLLYQN------------QILIEAGSL---------QKALEHLLDNEKQIV---DKLAFEETKADLLMKLG  233 (700)
T ss_pred             ---HHHHHHHHHHHH------------HHHHHcccH---------HHHHHHHHhhhhHHH---HHHHHhhhHHHHHHHHh
Confidence               111110000000            000000000         000000000000000   00000000111111222


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHH-HHcCChHHHHHHHHHHhcc-----CCC--------cHHH--
Q 001619          262 QLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFA-EKQGDFDWVVKLYERCLIP-----CAD--------YPEF--  325 (1043)
Q Consensus       262 ~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e-~~~g~~e~~~~lyerAl~~-----~~~--------~~~L--  325 (1043)
                      .+.++...|..+|.        .+|+++.-+..+...+ .-.+..+.+..+|.+.-..     ||.        ..++  
T Consensus       234 ~lEeA~~~y~~Ll~--------rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~  305 (700)
T KOG1156|consen  234 QLEEAVKVYRRLLE--------RNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKE  305 (700)
T ss_pred             hHHhHHHHHHHHHh--------hCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHH
Confidence            22333334444444        3577777666665444 2345566777888887653     211        1222  


Q ss_pred             -HHHHHHHHHHcCC---hHHHHH---------HHHHHHHHHhc------------------ccchHHHHH--HHHHHHhC
Q 001619          326 -WMRYVDFMESKGG---REIASY---------ALDRATQIFLK------------------RLPVIHLFN--ARYKEQIG  372 (1043)
Q Consensus       326 -Wl~yAk~~e~~g~---~e~Ar~---------ilerA~~~~~~------------------~~p~iwl~~--A~~E~~~g  372 (1043)
                       .-.|..-..+.|-   +...+.         ++++-+..+..                  -.+.+|+.|  +.-..+.|
T Consensus       306 ~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g  385 (700)
T KOG1156|consen  306 IVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLG  385 (700)
T ss_pred             HHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcc
Confidence             2223222223331   111222         44444432211                  012456654  44456799


Q ss_pred             CHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619          373 DTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET  422 (1043)
Q Consensus       373 ~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~  422 (1043)
                      +++.|...+..|+. ..|+.+++++.-+++....|+++.|-.++++|.+.
T Consensus       386 ~~~~A~~yId~AId-HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el  434 (700)
T KOG1156|consen  386 DYEVALEYIDLAID-HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL  434 (700)
T ss_pred             cHHHHHHHHHHHhc-cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Confidence            99999999999995 57888999999999999999999999999999987

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.84  E-value=3.2e-07  Score=94.96  Aligned_cols=90  Identities=14%  Similarity=0.124  Sum_probs=73.2

Q ss_pred             HHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhh
Q 001619           83 KARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWS  162 (1043)
Q Consensus        83 e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e  162 (1043)
                      ....|++..|++-+|+||+.+|.+++.|...+.+.... +..+.|++-|++|+..-|.   ..++-..|.-|+-..|.++
T Consensus        45 YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~-Ge~~~A~e~YrkAlsl~p~---~GdVLNNYG~FLC~qg~~~  120 (250)
T COG3063          45 YLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKL-GENDLADESYRKALSLAPN---NGDVLNNYGAFLCAQGRPE  120 (250)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc-CChhhHHHHHHHHHhcCCC---ccchhhhhhHHHHhCCChH
Confidence            45668888999999999999999999998888888777 8888888888888886665   5678888888888888888


Q ss_pred             hHHHHHHHHhcCCC
Q 001619          163 SLAQIFVQTLRFPS  176 (1043)
Q Consensus       163 ~a~~iy~raL~~p~  176 (1043)
                      .+..-|++++..|.
T Consensus       121 eA~q~F~~Al~~P~  134 (250)
T COG3063         121 EAMQQFERALADPA  134 (250)
T ss_pred             HHHHHHHHHHhCCC
Confidence            88888888877663

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.78  E-value=1.5e-06  Score=101.72  Aligned_cols=253  Identities=13%  Similarity=0.139  Sum_probs=180.1

Q ss_pred             CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHH
Q 001619           53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFK  132 (1043)
Q Consensus        53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lfe  132 (1043)
                      .+.++++++|+.+-+..|..++----|-.....+.+.-+.-.+-.-.+..+|.+++-|...+++.-.+ ++.+.|.+.|+
T Consensus       367 ~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQ-kdh~~Aik~f~  445 (638)
T KOG1126|consen  367 IEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQ-KDHDTAIKCFK  445 (638)
T ss_pred             HHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhh-hHHHHHHHHHH
Confidence            57789999999999999987754433333322222222222333445567899999999999998888 89999999999


Q ss_pred             HHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q 001619          133 RALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELV  212 (1043)
Q Consensus       133 rAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i  212 (1043)
                      ||+..-|.......+|-.  ++ .....+|.|.+-|+.+|.+.+..       |..|.+-                    
T Consensus       446 RAiQldp~faYayTLlGh--E~-~~~ee~d~a~~~fr~Al~~~~rh-------YnAwYGl--------------------  495 (638)
T KOG1126|consen  446 RAIQLDPRFAYAYTLLGH--ES-IATEEFDKAMKSFRKALGVDPRH-------YNAWYGL--------------------  495 (638)
T ss_pred             HhhccCCccchhhhhcCC--hh-hhhHHHHhHHHHHHhhhcCCchh-------hHHHHhh--------------------
Confidence            999865522112222211  00 12345888999999999875443       3233221                    


Q ss_pred             hccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHH
Q 001619          213 LEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNW  292 (1043)
Q Consensus       213 ~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W  292 (1043)
                        |.                                       +|-+..+...+..-|++++.        +||.+.-+-
T Consensus       496 --G~---------------------------------------vy~Kqek~e~Ae~~fqkA~~--------INP~nsvi~  526 (638)
T KOG1126|consen  496 --GT---------------------------------------VYLKQEKLEFAEFHFQKAVE--------INPSNSVIL  526 (638)
T ss_pred             --hh---------------------------------------heeccchhhHHHHHHHhhhc--------CCccchhHH
Confidence              00                                       00001111122233555553        789888888


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhC
Q 001619          293 HDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIG  372 (1043)
Q Consensus       293 ~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g  372 (1043)
                      .-+..++...|..|.+..+|++|+...|+.+--=...+..+...++.++|...||....+ .|+...++..-++...+.|
T Consensus       527 ~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~  605 (638)
T KOG1126|consen  527 CHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLG  605 (638)
T ss_pred             hhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHc
Confidence            888889988999999999999999999988877778888888899999999999987765 7777789999999999999


Q ss_pred             CHHHHHHHHHhhhh
Q 001619          373 DTSAARAAFPESYI  386 (1043)
Q Consensus       373 ~~d~Ar~ll~ral~  386 (1043)
                      +.+.|..-|.-|..
T Consensus       606 ~~~~Al~~f~~A~~  619 (638)
T KOG1126|consen  606 NTDLALLHFSWALD  619 (638)
T ss_pred             cchHHHHhhHHHhc
Confidence            99999999888875

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.77  E-value=7.9e-05  Score=89.06  Aligned_cols=305  Identities=14%  Similarity=0.147  Sum_probs=190.5

Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhC--
Q 001619           44 LSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTF--  121 (1043)
Q Consensus        44 i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~--  121 (1043)
                      +..++..  |+.+++...++..-....+...+-..-+++..+.|.+++|..+|...|..+|.+.+....|...+....  
T Consensus        11 ~~il~e~--g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~   88 (517)
T PF12569_consen   11 NSILEEA--GDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQL   88 (517)
T ss_pred             HHHHHHC--CCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccc
Confidence            3444444  889999999999999999888888888999999999999999999999999999998888888763221  


Q ss_pred             --CChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhh-hhh-hHHHHHHHHhc--CCCccHHHHHHHHHHHHHHHHH
Q 001619          122 --EDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQ-RWS-SLAQIFVQTLR--FPSKKLHHYYDSFKKLAGAWKE  195 (1043)
Q Consensus       122 --~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~-~~e-~a~~iy~raL~--~p~~~l~~~~~~y~~~~~~~~e  195 (1043)
                        .+.+....+|+.--...|..     .+...+-+....| .+. .+...+.+.|+  +|.     .+.           
T Consensus        89 ~~~~~~~~~~~y~~l~~~yp~s-----~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs-----lF~-----------  147 (517)
T PF12569_consen   89 SDEDVEKLLELYDELAEKYPRS-----DAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS-----LFS-----------  147 (517)
T ss_pred             ccccHHHHHHHHHHHHHhCccc-----cchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch-----HHH-----------
Confidence              23455666666544444431     1111111111011 011 11111111121  110     000           


Q ss_pred             hhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001619          196 ELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIR  275 (1043)
Q Consensus       196 ~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~  275 (1043)
                                                       .|+.++.+..   ++..|..                 ....|...+.
T Consensus       148 ---------------------------------~lk~Ly~d~~---K~~~i~~-----------------l~~~~~~~l~  174 (517)
T PF12569_consen  148 ---------------------------------NLKPLYKDPE---KAAIIES-----------------LVEEYVNSLE  174 (517)
T ss_pred             ---------------------------------HHHHHHcChh---HHHHHHH-----------------HHHHHHHhhc
Confidence                                             0011110000   0000000                 0011111111


Q ss_pred             cc-CCCCC---CCChHHHHHHHHH--HHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001619          276 RP-YFHVK---PLDDIQLKNWHDY--LSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRA  349 (1043)
Q Consensus       276 r~-~~~~~---~~~p~~~~~W~~y--i~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA  349 (1043)
                      .. .+...   ...+...-+|.-|  +..+...|++++|....++||...|..+++++.-|+.+...|++.+|...++.|
T Consensus       175 ~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~A  254 (517)
T PF12569_consen  175 SNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEA  254 (517)
T ss_pred             ccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            10 01100   1233444577655  667778899999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCC---hhhHH---HHHH--HHHHHHHcCCHHHHHHHHHHHHH
Q 001619          350 TQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSD---SRFIE---KVTF--KANMERRLGNFVAACDTYKEALE  421 (1043)
Q Consensus       350 ~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~---~~~~~---lw~~--~a~lE~~~G~~e~Ar~lyekale  421 (1043)
                      ... ....--|-.-.+++..|.|+++.|.+++...+....   .+..+   +|..  .+.--.+.|++-.|.+-|..+.+
T Consensus       255 r~L-D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k  333 (517)
T PF12569_consen  255 REL-DLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK  333 (517)
T ss_pred             HhC-ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            876 222223566789999999999999999988775331   11111   4543  45555677999999999988888


Q ss_pred             HHHh
Q 001619          422 TAAE  425 (1043)
Q Consensus       422 ~~~~  425 (1043)
                      .+..
T Consensus       334 ~f~~  337 (517)
T PF12569_consen  334 HFDD  337 (517)
T ss_pred             HHHH
Confidence            7654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.71  E-value=1.4e-06  Score=100.44  Aligned_cols=228  Identities=14%  Similarity=0.171  Sum_probs=135.3

Q ss_pred             CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHH
Q 001619           53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFK  132 (1043)
Q Consensus        53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lfe  132 (1043)
                      |++.++-.+||.+++.+|...+.|..+...-..+++-..|+..|+|||+..|.+.+.-+.++--.... +.-..|.+.|+
T Consensus       299 G~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNe-g~q~~Al~~L~  377 (579)
T KOG1125|consen  299 GDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNE-GLQNQALKMLD  377 (579)
T ss_pred             CCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhh-hhHHHHHHHHH
Confidence            66777777777777777777777777776666666666777777777777777777766665544433 33334555555


Q ss_pred             HHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCc-cHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHh
Q 001619          133 RALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSK-KLHHYYDSFKKLAGAWKEELECESDSAMEFQSEL  211 (1043)
Q Consensus       133 rAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~-~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~  211 (1043)
                      +=|+.-|..     +|.....   ..+..+.-       -.++.. .+..+-..|.+....                   
T Consensus       378 ~Wi~~~p~y-----~~l~~a~---~~~~~~~~-------~s~~~~~~l~~i~~~fLeaa~~-------------------  423 (579)
T KOG1125|consen  378 KWIRNKPKY-----VHLVSAG---ENEDFENT-------KSFLDSSHLAHIQELFLEAARQ-------------------  423 (579)
T ss_pred             HHHHhCccc-----hhccccC---ccccccCC-------cCCCCHHHHHHHHHHHHHHHHh-------------------
Confidence            444433221     1111100   00000000       000000 001111111111110                   


Q ss_pred             hhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHH
Q 001619          212 VLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKN  291 (1043)
Q Consensus       212 i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~  291 (1043)
                           . ....+.|+...+.-+                       |.-..+...+...|+.+|.        ++|++..+
T Consensus       424 -----~-~~~~DpdvQ~~LGVL-----------------------y~ls~efdraiDcf~~AL~--------v~Pnd~~l  466 (579)
T KOG1125|consen  424 -----L-PTKIDPDVQSGLGVL-----------------------YNLSGEFDRAVDCFEAALQ--------VKPNDYLL  466 (579)
T ss_pred             -----C-CCCCChhHHhhhHHH-----------------------HhcchHHHHHHHHHHHHHh--------cCCchHHH
Confidence                 0 001123333332222                       2222334445567777775        67999999


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001619          292 WHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQI  352 (1043)
Q Consensus       292 W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~  352 (1043)
                      |.++..-+......++|+..|.|||..-|.+...|+..+--+...|.+.+|.+.|-+|+..
T Consensus       467 WNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m  527 (579)
T KOG1125|consen  467 WNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM  527 (579)
T ss_pred             HHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence            9999888876667889999999999999999999999999999999999999999888876

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=98.70  E-value=5.8e-08  Score=103.29  Aligned_cols=140  Identities=12%  Similarity=0.295  Sum_probs=113.1

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcH----------------------HHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001619           24 QGLEEFIAEGSLDFDEWTSLLSEIENSCPDDI----------------------EMIGLVYDSFLAEFPLCYGYWRKYAD   81 (1043)
Q Consensus        24 ~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~----------------------~~~r~vyeraL~~~P~s~~lW~~y~~   81 (1043)
                      -.+|..|.+--.....+++||.. |-.- +.+                      .++-.+|-|+...+|+.+++|..|+.
T Consensus        38 r~fE~rL~rr~~klnDf~~YI~y-E~nl-eklRaKR~Kr~~v~~K~s~sD~sipqk~~f~~~R~tnkff~D~k~w~~y~~  115 (435)
T COG5191          38 RKFELRLQRREKKLNDFMRYIKY-ECNL-EKLRAKRVKRKKVGKKASFSDMSIPQKKIFELYRSTNKFFNDPKIWSQYAA  115 (435)
T ss_pred             HHHHHHHhcccchHHHHHHHHHH-HhhH-HHHHHHHHHHHHhcccccchhccccceeeEeeehhhhcCCCCcHHHHHHHH
Confidence            36778888888899999999874 3100 000                      12223567888899999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhh
Q 001619           82 HKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRW  161 (1043)
Q Consensus        82 ~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~  161 (1043)
                      ...+.+.+.++.++|..+|..+|.+++||+--|.|+....++++.+|.+|.++|+.-+.   ++.||..|.+||...   
T Consensus       116 Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~---~p~iw~eyfr~El~y---  189 (435)
T COG5191         116 YVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR---SPRIWIEYFRMELMY---  189 (435)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC---CchHHHHHHHHHHHH---
Confidence            99988899999999999999999999999998999877668999999999999997765   678999999999865   


Q ss_pred             hhHHHHHHHHhc
Q 001619          162 SSLAQIFVQTLR  173 (1043)
Q Consensus       162 e~a~~iy~raL~  173 (1043)
                        +.+++.|.++
T Consensus       190 --iTKL~~R~~K  199 (435)
T COG5191         190 --ITKLINRREK  199 (435)
T ss_pred             --HHHHHhhHHH
Confidence              4566666643

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.69  E-value=0.00013  Score=87.03  Aligned_cols=136  Identities=15%  Similarity=0.038  Sum_probs=120.3

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHH
Q 001619          288 QLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARY  367 (1043)
Q Consensus       288 ~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~  367 (1043)
                      ...+|.-.+++..+.+..+.++..+.+|-+.++..+.+|.+.+..++..|..++|...|.-|+.+ .|+...+-.+.|++
T Consensus       649 ~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l-dP~hv~s~~Ala~~  727 (799)
T KOG4162|consen  649 LQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL-DPDHVPSMTALAEL  727 (799)
T ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc-CCCCcHHHHHHHHH
Confidence            45789888888888999999999999999999999999999999999999999999999999977 77777788899999


Q ss_pred             HHHhCCHHHHH--HHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 001619          368 KEQIGDTSAAR--AAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAE  425 (1043)
Q Consensus       368 E~~~g~~d~Ar--~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~  425 (1043)
                      ..+.|+-.-|.  .++..|+. ..+.+.+.|+..+...+..|+.+.|-+.|.-|+++...
T Consensus       728 lle~G~~~la~~~~~L~dalr-~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S  786 (799)
T KOG4162|consen  728 LLELGSPRLAEKRSLLSDALR-LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES  786 (799)
T ss_pred             HHHhCCcchHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence            99999766554  49999985 56778899999999999999999999999999998443

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=2.6e-05  Score=89.89  Aligned_cols=28  Identities=14%  Similarity=0.211  Sum_probs=22.6

Q ss_pred             CCccHHHHHHHHHhCCCCHHHHHHHHHH
Q 001619           19 VGFGKQGLEEFIAEGSLDFDEWTSLLSE   46 (1043)
Q Consensus        19 ~~~~~~~le~~i~~nP~d~~~W~~~i~~   46 (1043)
                      ++..-..|.++|..+++++++..+++..
T Consensus       157 ~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~  184 (611)
T KOG1173|consen  157 REEARDKYKEALLADAKCFEAFEKLVSA  184 (611)
T ss_pred             HHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            4445678899999999999999888764

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.64  E-value=7.4e-05  Score=85.99  Aligned_cols=311  Identities=11%  Similarity=0.016  Sum_probs=174.6

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 001619           33 GSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCY---GYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDV  109 (1043)
Q Consensus        33 nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~---~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~L  109 (1043)
                      +|+..-.|..+...+...  ++.+.+...|.++....|.+.   ..+.-.+-.....|+++++..+++++++..|.+...
T Consensus         2 dp~~~~a~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a   79 (355)
T cd05804           2 DPDFALGHAAAALLLLLG--GERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLA   79 (355)
T ss_pred             CCccHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHH
Confidence            678888888887766554  566666888999888888663   344444445566789999999999999999999988


Q ss_pred             HHH---HHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCccHHHHHHHH
Q 001619          110 WFH---YCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSF  186 (1043)
Q Consensus       110 Wl~---Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~l~~~~~~y  186 (1043)
                      |..   |....... +....+.++++.   ..+.++.....+..........|+++.+...|++++.+.+.+.+....  
T Consensus        80 ~~~~~~~~~~~~~~-~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~--  153 (355)
T cd05804          80 LKLHLGAFGLGDFS-GMRDHVARVLPL---WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHA--  153 (355)
T ss_pred             HHHhHHHHHhcccc-cCchhHHHHHhc---cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHH--
Confidence            772   22221111 334444444443   223333222333334445567788999999999998764443221110  


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001619          187 KKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEK  266 (1043)
Q Consensus       187 ~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~  266 (1043)
                         +..               +.                         ...+.                 ++      ..
T Consensus       154 ---la~---------------i~-------------------------~~~g~-----------------~~------eA  167 (355)
T cd05804         154 ---VAH---------------VL-------------------------EMQGR-----------------FK------EG  167 (355)
T ss_pred             ---HHH---------------HH-------------------------HHcCC-----------------HH------HH
Confidence               000               00                         00000                 11      11


Q ss_pred             HHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCC-CcHHHHH-HHHH---HHHHcCChHH
Q 001619          267 INCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCA-DYPEFWM-RYVD---FMESKGGREI  341 (1043)
Q Consensus       267 ~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~-~~~~LWl-~yAk---~~e~~g~~e~  341 (1043)
                      ...+++.+...    ..........|..++.++...|+++++..+|++++...+ .....+. ..+.   .+...|....
T Consensus       168 ~~~l~~~l~~~----~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~  243 (355)
T cd05804         168 IAFMESWRDTW----DCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV  243 (355)
T ss_pred             HHHHHhhhhcc----CCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence            22223333210    001122345677778888888999999999999875433 1112222 2211   1122333222


Q ss_pred             HHHHHHHHHHHHhcc-----cchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCCh--------hhHHHHHHHHHHHHHcCC
Q 001619          342 ASYALDRATQIFLKR-----LPVIHLFNARYKEQIGDTSAARAAFPESYIDSDS--------RFIEKVTFKANMERRLGN  408 (1043)
Q Consensus       342 Ar~ilerA~~~~~~~-----~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~--------~~~~lw~~~a~lE~~~G~  408 (1043)
                      +... +.+.....+.     .....+..+......|+.+.|..+++........        ..+.+.+..+-.....|+
T Consensus       244 ~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~  322 (355)
T cd05804         244 GDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGN  322 (355)
T ss_pred             HHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCC
Confidence            2221 1122111111     1223345666677788899999888877542111        123455556677778888


Q ss_pred             HHHHHHHHHHHHHH
Q 001619          409 FVAACDTYKEALET  422 (1043)
Q Consensus       409 ~e~Ar~lyekale~  422 (1043)
                      .+.|+.++..++..
T Consensus       323 ~~~A~~~L~~al~~  336 (355)
T cd05804         323 YATALELLGPVRDD  336 (355)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999888888886

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.64  E-value=5.2e-07  Score=95.04  Aligned_cols=116  Identities=10%  Similarity=0.125  Sum_probs=58.5

Q ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HhhCCC--hHHHHHH
Q 001619           54 DIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLS-MSTFED--PNDVRRL  130 (1043)
Q Consensus        54 ~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~-~~~~~~--~e~ar~l  130 (1043)
                      +.+++...++++|+.+|.+.+.|..++......|++++|...|++|+...|.+.++|..|+..+ ... +.  .++++.+
T Consensus        54 ~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~-g~~~~~~A~~~  132 (198)
T PRK10370         54 TPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQA-GQHMTPQTREM  132 (198)
T ss_pred             hHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-CCCCcHHHHHH
Confidence            3344444555555555555555555555555555555555555555555555555555555532 222 22  2455555


Q ss_pred             HHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhc
Q 001619          131 FKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLR  173 (1043)
Q Consensus       131 ferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~  173 (1043)
                      |++|++.-|.+   ...|...+......|+++.|...|+++++
T Consensus       133 l~~al~~dP~~---~~al~~LA~~~~~~g~~~~Ai~~~~~aL~  172 (198)
T PRK10370        133 IDKALALDANE---VTALMLLASDAFMQADYAQAIELWQKVLD  172 (198)
T ss_pred             HHHHHHhCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            55555544442   23444444444445555555555555554

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.64  E-value=6.2e-05  Score=83.86  Aligned_cols=191  Identities=14%  Similarity=0.067  Sum_probs=147.4

Q ss_pred             cCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHH
Q 001619          302 QGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAF  381 (1043)
Q Consensus       302 ~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll  381 (1043)
                      +|+++++...|.+||.....+.+........++..|++++|...|-+.-.+ +.++..+....|.+.+...+...|.++|
T Consensus       503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~  581 (840)
T KOG2003|consen  503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELL  581 (840)
T ss_pred             cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence            578999999999999887777777777777888899999999999876655 4467778889999999999999999999


Q ss_pred             HhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCCchHH
Q 001619          382 PESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHIS  461 (1043)
Q Consensus       382 ~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~le  461 (1043)
                      ..+.. ..|+...+..+.++|..+-|+-..|...+-.....      ||....      ..+|+...-     -++...+
T Consensus       582 ~q~~s-lip~dp~ilskl~dlydqegdksqafq~~ydsyry------fp~nie------~iewl~ayy-----idtqf~e  643 (840)
T KOG2003|consen  582 MQANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY------FPCNIE------TIEWLAAYY-----IDTQFSE  643 (840)
T ss_pred             HHhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc------cCcchH------HHHHHHHHH-----HhhHHHH
Confidence            99975 46666789999999999999999998887666665      443321      123321111     1133456


Q ss_pred             HHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCCc
Q 001619          462 IVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFL-DLCGTIHDIRNAWNQHIKLFPHTV  521 (1043)
Q Consensus       462 raR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fe-e~~G~~~~a~~~~~ra~k~~p~~~  521 (1043)
                      ++-..||+|-..-|..          .-|.+.+.-+ ++-||...|..+|...-+.||..-
T Consensus       644 kai~y~ekaaliqp~~----------~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedl  694 (840)
T KOG2003|consen  644 KAINYFEKAALIQPNQ----------SKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDL  694 (840)
T ss_pred             HHHHHHHHHHhcCccH----------HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccch
Confidence            7788999988766664          2366766666 677999999999999999999753

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.62  E-value=0.00051  Score=82.08  Aligned_cols=136  Identities=15%  Similarity=0.110  Sum_probs=102.8

Q ss_pred             hHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHH
Q 001619          359 VIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQ  438 (1043)
Q Consensus       359 ~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~  438 (1043)
                      .+|+..+.+..+.++-++|+..+..|-+ ..+.+..+|...+.+....|..++|...|..|+.+      .|..+...  
T Consensus       651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~-~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l------dP~hv~s~--  721 (799)
T KOG4162|consen  651 KLWLLAADLFLLSGNDDEARSCLLEASK-IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL------DPDHVPSM--  721 (799)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHh-cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc------CCCCcHHH--
Confidence            6899999999999999999988888875 35666778888888888889999999999999987      44433222  


Q ss_pred             HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001619          439 FSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFP  518 (1043)
Q Consensus       439 ~ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~~p  518 (1043)
                            ....+.....|.. ++...|+++..|+...|.+         -+.|..-....+..|+.+.|.+.|.-|++.=+
T Consensus       722 ------~Ala~~lle~G~~-~la~~~~~L~dalr~dp~n---------~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~  785 (799)
T KOG4162|consen  722 ------TALAELLLELGSP-RLAEKRSLLSDALRLDPLN---------HEAWYYLGEVFKKLGDSKQAAECFQAALQLEE  785 (799)
T ss_pred             ------HHHHHHHHHhCCc-chHHHHHHHHHHHhhCCCC---------HHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence                  2344555555644 4777889999999998887         23454444455678999999999998888755


Q ss_pred             C
Q 001619          519 H  519 (1043)
Q Consensus       519 ~  519 (1043)
                      .
T Consensus       786 S  786 (799)
T KOG4162|consen  786 S  786 (799)
T ss_pred             C
Confidence            4

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.62  E-value=0.0001  Score=89.58  Aligned_cols=388  Identities=14%  Similarity=0.076  Sum_probs=231.2

Q ss_pred             ccHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001619           21 FGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAV  100 (1043)
Q Consensus        21 ~~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL  100 (1043)
                      .....|-++++.+++=..+|..+...++..  .+..++++.|.+|.+..+..+..|...++...+..+++.|..+.-++-
T Consensus       476 ~al~ali~alrld~~~apaf~~LG~iYrd~--~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~  553 (1238)
T KOG1127|consen  476 LALHALIRALRLDVSLAPAFAFLGQIYRDS--DDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA  553 (1238)
T ss_pred             HHHHHHHHHHhcccchhHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence            344567778888888888888888877766  577888999999999999999999999998888888888888866666


Q ss_pred             HhcCCCH--HHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcC-CCc
Q 001619          101 QSATYSV--DVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRF-PSK  177 (1043)
Q Consensus       101 ~~~P~s~--~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~-p~~  177 (1043)
                      +..|.-.  .=|....-+..+- ++...+..-|.-|++.-|.++   ..|....+-.-+.|.+..+.++|.|+..+ |.+
T Consensus       554 qka~a~~~k~nW~~rG~yyLea-~n~h~aV~~fQsALR~dPkD~---n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s  629 (1238)
T KOG1127|consen  554 QKAPAFACKENWVQRGPYYLEA-HNLHGAVCEFQSALRTDPKDY---NLWLGLGEAYPESGRYSHALKVFTKASLLRPLS  629 (1238)
T ss_pred             hhchHHHHHhhhhhccccccCc-cchhhHHHHHHHHhcCCchhH---HHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence            6655433  3455544444444 677888899999999888754   69999999888899999999999999654 333


Q ss_pred             cHHHHHH--------HHHHHHHHHHHhhhhhh--hhh--------HHHHHHhhhccccccCccchhhhHHHHhhcCCchh
Q 001619          178 KLHHYYD--------SFKKLAGAWKEELECES--DSA--------MEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVD  239 (1043)
Q Consensus       178 ~l~~~~~--------~y~~~~~~~~e~l~~~~--~~~--------~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~  239 (1043)
                      ....++.        +|++.++.+...+....  ...        ++......++|......+..+  ..+..+..... 
T Consensus       630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~e--ksie~f~~~l~-  706 (1238)
T KOG1127|consen  630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFE--KSIESFIVSLI-  706 (1238)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHHHH-
Confidence            2222221        23333332221111000  000        000011111111111110000  00000000000 


Q ss_pred             hHH-HHHHHHHHH-HHHHHH---HHH--HHHHHHHHH----HHHHhccc--C--CCCC-----CC-ChHHHHHHHHHHHH
Q 001619          240 LVR-SKAIQKYRF-IGEQIY---KEA--SQLDEKINC----FENLIRRP--Y--FHVK-----PL-DDIQLKNWHDYLSF  298 (1043)
Q Consensus       240 ~e~-ar~i~~~~~-~~~~~y---~~a--~~~~~~~~~----fE~~i~r~--~--~~~~-----~~-~p~~~~~W~~yi~~  298 (1043)
                       ++ +.... .|. ..+.++   ...  .-.+.-...    +|..+.-+  -  +...     .+ ......-|.+.+.-
T Consensus       707 -h~~~~~~~-~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGin  784 (1238)
T KOG1127|consen  707 -HSLQSDRL-QWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGIN  784 (1238)
T ss_pred             -HhhhhhHH-HHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHH
Confidence             00 00000 000 000000   000  000011111    22211000  0  0000     00 00112235544322


Q ss_pred             HH----H---cC-ChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Q 001619          299 AE----K---QG-DFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQ  370 (1043)
Q Consensus       299 e~----~---~g-~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~  370 (1043)
                      +.    .   .+ +...++..+.++|..|.+...+|.+..-. -..|++.-|...|-+++.. .+.+.-.|+.++-+...
T Consensus       785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~  862 (1238)
T KOG1127|consen  785 YLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLE  862 (1238)
T ss_pred             HHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEe
Confidence            21    1   12 34578999999999999999999999877 4346777777888777755 66677789999999999


Q ss_pred             hCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619          371 IGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET  422 (1043)
Q Consensus       371 ~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~  422 (1043)
                      +.+++-|...|.++.. ..|.+..-|+.-+-+-+..|++-.+..+|.-.-+.
T Consensus       863 n~d~E~A~~af~~~qS-LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el  913 (1238)
T KOG1127|consen  863 NQDFEHAEPAFSSVQS-LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDEL  913 (1238)
T ss_pred             cccHHHhhHHHHhhhh-cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHh
Confidence            9999999999999985 46767788999999999999888888888774444

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=0.00017  Score=80.12  Aligned_cols=227  Identities=16%  Similarity=0.101  Sum_probs=134.1

Q ss_pred             ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHH
Q 001619          285 DDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFN  364 (1043)
Q Consensus       285 ~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~  364 (1043)
                      .|.++++....++.+...|+.+.+...|+++...+|...+---.|+..+-..|+.+...++..+-+.+ .+....-|+-.
T Consensus       228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~-~~~ta~~wfV~  306 (564)
T KOG1174|consen  228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK-VKYTASHWFVH  306 (564)
T ss_pred             CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh-hhcchhhhhhh
Confidence            35566666666666666666666666666666666666666666666666666666666655555544 22334456655


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hccCCccHHHHHHHHH--
Q 001619          365 ARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAE-QRKFHTLPLLYVQFSR--  441 (1043)
Q Consensus       365 A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~-~~~~p~~~~l~~~~ar--  441 (1043)
                      +...+...++.+|..+-+++|. ..+.+..-++.-..+.+..|..+.|.-.|+.|+.+... ...+.++..-|+-+.+  
T Consensus       307 ~~~l~~~K~~~rAL~~~eK~I~-~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k  385 (564)
T KOG1174|consen  307 AQLLYDEKKFERALNFVEKCID-SEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK  385 (564)
T ss_pred             hhhhhhhhhHHHHHHHHHHHhc-cCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence            5666666666666666666663 34444555555556666666666666666666655310 0111112222222211  


Q ss_pred             -------HHHHH---HHHHHHHhC------CCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHH
Q 001619          442 -------LTYTE---LIKFTMVHG------GRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHD  505 (1043)
Q Consensus       442 -------~~~~~---~~~fe~~~g------~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~  505 (1043)
                             ..+..   -++-++..|      +....|+|..++|++|..+|.-         ......-.++...+|-.++
T Consensus       386 EA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y---------~~AV~~~AEL~~~Eg~~~D  456 (564)
T KOG1174|consen  386 EANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY---------TPAVNLIAELCQVEGPTKD  456 (564)
T ss_pred             HHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc---------HHHHHHHHHHHHhhCccch
Confidence                   11100   011111122      2334578999999999999985         1234456667778899999


Q ss_pred             HHHHHHHHHhhCCCCcc
Q 001619          506 IRNAWNQHIKLFPHTVR  522 (1043)
Q Consensus       506 a~~~~~ra~k~~p~~~~  522 (1043)
                      +.++++|+++.+++...
T Consensus       457 ~i~LLe~~L~~~~D~~L  473 (564)
T KOG1174|consen  457 IIKLLEKHLIIFPDVNL  473 (564)
T ss_pred             HHHHHHHHHhhccccHH
Confidence            99999999999998766

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=2.6e-05  Score=86.53  Aligned_cols=136  Identities=13%  Similarity=0.027  Sum_probs=96.2

Q ss_pred             CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHH-H-HHHHcCChHHHHHHHHHHHHHHhcccchHH
Q 001619          284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYV-D-FMESKGGREIASYALDRATQIFLKRLPVIH  361 (1043)
Q Consensus       284 ~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yA-k-~~e~~g~~e~Ar~ilerA~~~~~~~~p~iw  361 (1043)
                      +-|..++.|.-++.-+...|.+.++..+-..++...+....--.-+. . .+..-..-++|.+.|+++++. .|..-..-
T Consensus       363 Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~-~P~Y~~AV  441 (564)
T KOG1174|consen  363 LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI-NPIYTPAV  441 (564)
T ss_pred             cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc-CCccHHHH
Confidence            44677777777777766677888877777777776665533222221 1 111222368999999999987 55544455


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619          362 LFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET  422 (1043)
Q Consensus       362 l~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~  422 (1043)
                      +..|++..+.|..+.+.+++++++.... + ..+....+++..-.+.+.+|...|..|+..
T Consensus       442 ~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~  500 (564)
T KOG1174|consen  442 NLIAELCQVEGPTKDIIKLLEKHLIIFP-D-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQ  500 (564)
T ss_pred             HHHHHHHHhhCccchHHHHHHHHHhhcc-c-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            6678899999999999999999996433 2 346777788888888888888888888886

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=5.6e-06  Score=95.19  Aligned_cols=133  Identities=11%  Similarity=0.086  Sum_probs=84.4

Q ss_pred             CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 001619           35 LDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYC  114 (1043)
Q Consensus        35 ~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~  114 (1043)
                      .+.+.-..-++.+-..  ..+..-.++++..++.+|...+...-.|--..+.|+..+...+=-+.|...|.+.--|.+-+
T Consensus       242 ~~~dll~~~ad~~y~~--c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg  319 (611)
T KOG1173|consen  242 ENLDLLAEKADRLYYG--CRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVG  319 (611)
T ss_pred             hcHHHHHHHHHHHHHc--ChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHH
Confidence            3444444444433222  56777777888888888877776666666555556444444444456666787777888777


Q ss_pred             HHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhc
Q 001619          115 SLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLR  173 (1043)
Q Consensus       115 ~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~  173 (1043)
                      -|.... +.+.+||+.|.+|...-|.   -++-|+.|.--..-.+.-+.+...|.+|-+
T Consensus       320 ~YYl~i-~k~seARry~SKat~lD~~---fgpaWl~fghsfa~e~EhdQAmaaY~tAar  374 (611)
T KOG1173|consen  320 CYYLMI-GKYSEARRYFSKATTLDPT---FGPAWLAFGHSFAGEGEHDQAMAAYFTAAR  374 (611)
T ss_pred             HHHHHh-cCcHHHHHHHHHHhhcCcc---ccHHHHHHhHHhhhcchHHHHHHHHHHHHH
Confidence            777666 7777788888877654332   347777777655555556677777776644

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.56  E-value=2.1e-05  Score=93.04  Aligned_cols=126  Identities=16%  Similarity=0.190  Sum_probs=78.8

Q ss_pred             HHHHHHcCChHHHHHHHHHHhcc--------CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc----ccc----h
Q 001619          296 LSFAEKQGDFDWVVKLYERCLIP--------CADYPEFWMRYVDFMESKGGREIASYALDRATQIFLK----RLP----V  359 (1043)
Q Consensus       296 i~~e~~~g~~e~~~~lyerAl~~--------~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~----~~p----~  359 (1043)
                      +..+...+.++.+..+|.+++..        ++....+...++..+...|++++|+.+|++|+...-.    ...    -
T Consensus       332 ~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~  411 (508)
T KOG1840|consen  332 AAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKP  411 (508)
T ss_pred             HHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHH
Confidence            33444445555555555555532        2234566777777777777777777777777765311    111    2


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHhhh------hCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619          360 IHLFNARYKEQIGDTSAARAAFPESY------IDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET  422 (1043)
Q Consensus       360 iwl~~A~~E~~~g~~d~Ar~ll~ral------~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~  422 (1043)
                      ||-....+ .+.+.+..|-.+|.+++      ....++..-.+...+.+.+..|+++.|.++-++++..
T Consensus       412 l~~la~~~-~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~  479 (508)
T KOG1840|consen  412 LNQLAEAY-EELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA  479 (508)
T ss_pred             HHHHHHHH-HHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            55555555 55555555555555443      3333455667888889999999999999998888865

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.56  E-value=1.4e-06  Score=91.79  Aligned_cols=119  Identities=13%  Similarity=0.112  Sum_probs=107.4

Q ss_pred             cCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHH-HHhCC--HHHHH
Q 001619          302 QGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYK-EQIGD--TSAAR  378 (1043)
Q Consensus       302 ~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E-~~~g~--~d~Ar  378 (1043)
                      .++.+.+...|++++...|++.+.|...+..+...|++++|...|++|++. .++.+.+|+.+|... ...|+  .++|+
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l-~P~~~~~~~~lA~aL~~~~g~~~~~~A~  130 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL-RGENAELYAALATVLYYQAGQHMTPQTR  130 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence            356788999999999999999999999999999999999999999999987 788899999999964 67777  59999


Q ss_pred             HHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619          379 AAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET  422 (1043)
Q Consensus       379 ~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~  422 (1043)
                      .+|+++++ ..|+....+...+....+.|+++.|...|+++++.
T Consensus       131 ~~l~~al~-~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l  173 (198)
T PRK10370        131 EMIDKALA-LDANEVTALMLLASDAFMQADYAQAIELWQKVLDL  173 (198)
T ss_pred             HHHHHHHH-hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            99999996 46667888888888888999999999999999997

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.55  E-value=2.6e-06  Score=105.13  Aligned_cols=148  Identities=14%  Similarity=0.001  Sum_probs=133.4

Q ss_pred             hHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHH
Q 001619          286 DIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNA  365 (1043)
Q Consensus       286 p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A  365 (1043)
                      |+..+....+++.+...|..+++..+|++|+..+|++...++.|+..+.+.+.+++|+..+++++.. .|+++...+..|
T Consensus        83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~-~p~~~~~~~~~a  161 (694)
T PRK15179         83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG-GSSSAREILLEA  161 (694)
T ss_pred             cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-CCCCHHHHHHHH
Confidence            5667888888999999999999999999999999999999999999999999999999999999988 888899999999


Q ss_pred             HHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHH
Q 001619          366 RYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSR  441 (1043)
Q Consensus       366 ~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar  441 (1043)
                      ......|.+++|..+|++++. ..++....|+.|+.+.+..|..++|...|++|++.+.     ++ .+-|.+++-
T Consensus       162 ~~l~~~g~~~~A~~~y~~~~~-~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~-----~~-~~~~~~~~~  230 (694)
T PRK15179        162 KSWDEIGQSEQADACFERLSR-QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG-----DG-ARKLTRRLV  230 (694)
T ss_pred             HHHHHhcchHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC-----cc-hHHHHHHHH
Confidence            999999999999999999996 5667788999999999999999999999999999853     22 355555543

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=98.54  E-value=1.3e-07  Score=100.76  Aligned_cols=108  Identities=13%  Similarity=0.235  Sum_probs=93.8

Q ss_pred             cHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHH
Q 001619           22 GKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKA-RLCSIDKVVEVFERAV  100 (1043)
Q Consensus        22 ~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~-~~~~~e~a~~lfeRAL  100 (1043)
                      .+..|-+.....|.|++.|..|+....+.  +...++..||-.+|..+|+++++|.-.+.+|. ..++++.+|.+|.+||
T Consensus        92 ~~f~~~R~tnkff~D~k~w~~y~~Y~~k~--k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~gl  169 (435)
T COG5191          92 KIFELYRSTNKFFNDPKIWSQYAAYVIKK--KMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGL  169 (435)
T ss_pred             eeEeeehhhhcCCCCcHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhh
Confidence            34456677788999999999999988876  78889999999999999999999999888875 4589999999999999


Q ss_pred             HhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHh
Q 001619          101 QSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSF  137 (1043)
Q Consensus       101 ~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~  137 (1043)
                      +.+|.++.||.+|.++++..      .-+++.|.++.
T Consensus       170 R~N~~~p~iw~eyfr~El~y------iTKL~~R~~Kt  200 (435)
T COG5191         170 RMNSRSPRIWIEYFRMELMY------ITKLINRREKT  200 (435)
T ss_pred             ccCCCCchHHHHHHHHHHHH------HHHHHhhHHHH
Confidence            99999999999999998765      56677766543

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.53  E-value=2.6e-06  Score=85.09  Aligned_cols=120  Identities=9%  Similarity=0.032  Sum_probs=102.6

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001619           23 KQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQS  102 (1043)
Q Consensus        23 ~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~  102 (1043)
                      ...|+++|..+|.+   |..+...+...  ++++.+...|++++...|.+...|...+......|++++|...|++|+..
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~--g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l   87 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQE--GDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML   87 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            46899999999986   33333334444  88999999999999999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHH
Q 001619          103 ATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKY  151 (1043)
Q Consensus       103 ~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~y  151 (1043)
                      .|.+++.|...+..+... |+.++|+..|++|++..|.+   ...|...
T Consensus        88 ~p~~~~a~~~lg~~l~~~-g~~~eAi~~~~~Al~~~p~~---~~~~~~~  132 (144)
T PRK15359         88 DASHPEPVYQTGVCLKMM-GEPGLAREAFQTAIKMSYAD---ASWSEIR  132 (144)
T ss_pred             CCCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC---hHHHHHH
Confidence            999999999999988887 99999999999999988874   3455443

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=98.51  E-value=4.1e-06  Score=95.02  Aligned_cols=147  Identities=12%  Similarity=0.119  Sum_probs=122.7

Q ss_pred             HHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCC------------hHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Q 001619          267 INCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGD------------FDWVVKLYERCLIPCADYPEFWMRYVDFME  334 (1043)
Q Consensus       267 ~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~------------~e~~~~lyerAl~~~~~~~~LWl~yAk~~e  334 (1043)
                      ...|++.++        .+|++++.|+.|++|-.+.-.            .++-..+|+|||..+|+...||+.|.+...
T Consensus         5 ~~el~~~v~--------~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~   76 (321)
T PF08424_consen    5 TAELNRRVR--------ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGE   76 (321)
T ss_pred             HHHHHHHHH--------hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            345666665        469999999999999765321            457788999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHH---hCCHHHHHHHHHhhhhCC-----------------ChhhHH
Q 001619          335 SKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQ---IGDTSAARAAFPESYIDS-----------------DSRFIE  394 (1043)
Q Consensus       335 ~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~---~g~~d~Ar~ll~ral~~~-----------------~~~~~~  394 (1043)
                      +..+.+.....+++++.. .+..+.+|..|.+|...   .-.++..+.+|.+++...                 ....+.
T Consensus        77 ~~~~~~~l~~~we~~l~~-~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~  155 (321)
T PF08424_consen   77 KVWDSEKLAKKWEELLFK-NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLY  155 (321)
T ss_pred             HhCCHHHHHHHHHHHHHH-CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHH
Confidence            988999999999999987 67788999999999876   346889999999987521                 013467


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619          395 KVTFKANMERRLGNFVAACDTYKEALET  422 (1043)
Q Consensus       395 lw~~~a~lE~~~G~~e~Ar~lyekale~  422 (1043)
                      ++..++.|++..|..+.|..+++-.++.
T Consensus       156 v~~r~~~fl~~aG~~E~Ava~~Qa~lE~  183 (321)
T PF08424_consen  156 VFLRLCRFLRQAGYTERAVALWQALLEF  183 (321)
T ss_pred             HHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence            8889999999999999999999999997

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.51  E-value=0.00039  Score=75.47  Aligned_cols=266  Identities=13%  Similarity=0.066  Sum_probs=169.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHH--HHHHHH
Q 001619           78 KYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWD--KYIEFE  155 (1043)
Q Consensus        78 ~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~--~yi~fe  155 (1043)
                      +=+++..+ ...++|..+|-..+...|..+++=+.+.++.... |.+++|.++-.--++.-..++. .++-.  ...+=.
T Consensus        41 ~GlNfLLs-~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsR-GEvDRAIRiHQ~L~~spdlT~~-qr~lAl~qL~~Dy  117 (389)
T COG2956          41 KGLNFLLS-NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSR-GEVDRAIRIHQTLLESPDLTFE-QRLLALQQLGRDY  117 (389)
T ss_pred             hHHHHHhh-cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhc-chHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHHHH
Confidence            33444433 3578999999999999999999999999988877 8888888887655554443331 22111  111112


Q ss_pred             HHhhhhhhHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcC
Q 001619          156 ISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLD  235 (1043)
Q Consensus       156 ~~~~~~e~a~~iy~raL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~  235 (1043)
                      +..|-+++|..+|...+..+......        +..                                    .+     
T Consensus       118 m~aGl~DRAE~~f~~L~de~efa~~A--------lqq------------------------------------Ll-----  148 (389)
T COG2956         118 MAAGLLDRAEDIFNQLVDEGEFAEGA--------LQQ------------------------------------LL-----  148 (389)
T ss_pred             HHhhhhhHHHHHHHHHhcchhhhHHH--------HHH------------------------------------HH-----
Confidence            23566677777766665543211000        000                                    00     


Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHH---HHHHHHHHHHHHcCChHHHHHHH
Q 001619          236 PSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQL---KNWHDYLSFAEKQGDFDWVVKLY  312 (1043)
Q Consensus       236 ~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~---~~W~~yi~~e~~~g~~e~~~~ly  312 (1043)
                               .||    ..+.-|++|.+...++..   .-         -.+.++   ..+..++.-..-..+.++++.++
T Consensus       149 ---------~IY----Q~treW~KAId~A~~L~k---~~---------~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l  203 (389)
T COG2956         149 ---------NIY----QATREWEKAIDVAERLVK---LG---------GQTYRVEIAQFYCELAQQALASSDVDRARELL  203 (389)
T ss_pred             ---------HHH----HHhhHHHHHHHHHHHHHH---cC---------CccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence                     000    011223333333322211   00         112223   34555555555567899999999


Q ss_pred             HHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhh
Q 001619          313 ERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRF  392 (1043)
Q Consensus       313 erAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~  392 (1043)
                      +||+..++++...=+..++.+...|++..|.+.|+++.+.-....++|.-...+.+...|+.+..+..+.+++.....  
T Consensus       204 ~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g--  281 (389)
T COG2956         204 KKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG--  281 (389)
T ss_pred             HHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC--
Confidence            999999999999999999999999999999999999998722234566666677778899999999999999864332  


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619          393 IEKVTFKANMERRLGNFVAACDTYKEALET  422 (1043)
Q Consensus       393 ~~lw~~~a~lE~~~G~~e~Ar~lyekale~  422 (1043)
                      +.+-...+++.+.....+.|.....+-+..
T Consensus       282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r  311 (389)
T COG2956         282 ADAELMLADLIELQEGIDAAQAYLTRQLRR  311 (389)
T ss_pred             ccHHHHHHHHHHHhhChHHHHHHHHHHHhh
Confidence            334444556667777788888888777776

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=0.00063  Score=78.52  Aligned_cols=400  Identities=11%  Similarity=0.081  Sum_probs=204.1

Q ss_pred             CCccHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001619           19 VGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFER   98 (1043)
Q Consensus        19 ~~~~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeR   98 (1043)
                      +++.+..|.++|..+|.+--.+..-...+-+.  +.+.++-.=-.+..+.+|.-.+-|.+......-+|+|++|+..|++
T Consensus        18 ~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~--~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~   95 (539)
T KOG0548|consen   18 FETAIRLFTEAIMLSPTNHVLYSNRSAAYASL--GSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSE   95 (539)
T ss_pred             HHHHHHHHHHHHccCCCccchhcchHHHHHHH--hhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHH
Confidence            56678889999999999665555544444444  6777777778888999999999999999988889999999999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhh--hhHHHHHHHHhcCCC
Q 001619           99 AVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRW--SSLAQIFVQTLRFPS  176 (1043)
Q Consensus        99 AL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~--e~a~~iy~raL~~p~  176 (1043)
                      +|+..|.+.-|-..+......          .+ ++    +.-+.+..+|...........-.  ...++++...-+.|.
T Consensus        96 GL~~d~~n~~L~~gl~~a~~~----------~~-~~----~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~  160 (539)
T KOG0548|consen   96 GLEKDPSNKQLKTGLAQAYLE----------DY-AA----DQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPT  160 (539)
T ss_pred             HhhcCCchHHHHHhHHHhhhH----------HH-Hh----hhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcH
Confidence            999999998888776665310          00 11    22233567887776654432211  111222211111221


Q ss_pred             ccHHHHH--HHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccc------cCccchhhhHHHHhhcCCchhhHHHHHHHH
Q 001619          177 KKLHHYY--DSFKKLAGAWKEELECESDSAMEFQSELVLEGEVP------AYYKDDETSSVIKDLLDPSVDLVRSKAIQK  248 (1043)
Q Consensus       177 ~~l~~~~--~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~------~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~  248 (1043)
                      . +-.+.  .........+.   ....       ......+...      .....-+....+.+..+.....+.++....
T Consensus       161 ~-l~~~l~d~r~m~a~~~l~---~~~~-------~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~  229 (539)
T KOG0548|consen  161 S-LKLYLNDPRLMKADGQLK---GVDE-------LLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKE  229 (539)
T ss_pred             h-hhcccccHHHHHHHHHHh---cCcc-------ccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHH
Confidence            1 11111  01111111100   0000       0000000000      000000000000000000000001111000


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHH-
Q 001619          249 YRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWM-  327 (1043)
Q Consensus       249 ~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl-  327 (1043)
                         +....|. .+....+...|..+|.        ++ .+..........+...|.+.+++.+-+.|+......-.... 
T Consensus       230 ---lgnaayk-kk~f~~a~q~y~~a~e--------l~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~kl  296 (539)
T KOG0548|consen  230 ---LGNAAYK-KKDFETAIQHYAKALE--------LA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKL  296 (539)
T ss_pred             ---HHHHHHH-hhhHHHHHHHHHHHHh--------Hh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHH
Confidence               0001111 1111122222222221        22 23333333333333344444555444444432111111111 


Q ss_pred             ------HHHHHHHHcCChHHHHHHHHHHHHHHhc-c---------------------cchH---HHHHHHHHHHhCCHHH
Q 001619          328 ------RYVDFMESKGGREIASYALDRATQIFLK-R---------------------LPVI---HLFNARYKEQIGDTSA  376 (1043)
Q Consensus       328 ------~yAk~~e~~g~~e~Ar~ilerA~~~~~~-~---------------------~p~i---wl~~A~~E~~~g~~d~  376 (1043)
                            +.++.+.+.++.+.|+..|.+++..+.. +                     .|+.   --.-+.-.++.|+|..
T Consensus       297 Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~  376 (539)
T KOG0548|consen  297 IAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPE  376 (539)
T ss_pred             HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHH
Confidence                  1112233335566777777776654321 0                     0111   0111222345789999


Q ss_pred             HHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCC
Q 001619          377 ARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGG  456 (1043)
Q Consensus       377 Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~  456 (1043)
                      |.+.|.+||+. .|+..++|...+-...++|++..|.+-.+++|++      .|.+.+.|+..+.-.     .+.++   
T Consensus       377 Av~~YteAIkr-~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL------~p~~~kgy~RKg~al-----~~mk~---  441 (539)
T KOG0548|consen  377 AVKHYTEAIKR-DPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL------DPNFIKAYLRKGAAL-----RAMKE---  441 (539)
T ss_pred             HHHHHHHHHhc-CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------CchHHHHHHHHHHHH-----HHHHH---
Confidence            99999999964 5777889999988889999999999999999998      777788876553221     11222   


Q ss_pred             CchHHHHHHHHHHHhhcCCCc
Q 001619          457 RSHISIVDAVISNALYSRPDV  477 (1043)
Q Consensus       457 ~~~leraR~l~erAl~~~p~~  477 (1043)
                         .+.+-..|..++..+|++
T Consensus       442 ---ydkAleay~eale~dp~~  459 (539)
T KOG0548|consen  442 ---YDKALEAYQEALELDPSN  459 (539)
T ss_pred             ---HHHHHHHHHHHHhcCchh
Confidence               334667888888877765

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.48  E-value=0.00018  Score=82.72  Aligned_cols=99  Identities=14%  Similarity=-0.019  Sum_probs=50.6

Q ss_pred             hHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccc----hHH
Q 001619          286 DIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLP----VIH  361 (1043)
Q Consensus       286 p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p----~iw  361 (1043)
                      |.....+..++..+...|+++++..+|++++...|+...++..++..+...|++++|+..|++++... +..+    .+|
T Consensus       111 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~-~~~~~~~~~~~  189 (355)
T cd05804         111 PDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTW-DCSSMLRGHNW  189 (355)
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhcc-CCCcchhHHHH
Confidence            33333333334444455666666666666666656555556666665555666666666666555441 1111    123


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHhhh
Q 001619          362 LFNARYKEQIGDTSAARAAFPESY  385 (1043)
Q Consensus       362 l~~A~~E~~~g~~d~Ar~ll~ral  385 (1043)
                      ..++.+....|++++|+.+|++++
T Consensus       190 ~~la~~~~~~G~~~~A~~~~~~~~  213 (355)
T cd05804         190 WHLALFYLERGDYEAALAIYDTHI  213 (355)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHh
Confidence            334444444555555555554443

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PLN02789 farnesyltranstransferase

Probab=98.48  E-value=4.8e-05  Score=85.94  Aligned_cols=138  Identities=12%  Similarity=0.083  Sum_probs=98.9

Q ss_pred             CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCHHHHHH
Q 001619           34 SLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLC-SIDKVVEVFERAVQSATYSVDVWFH  112 (1043)
Q Consensus        34 P~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~-~~e~a~~lfeRAL~~~P~s~~LWl~  112 (1043)
                      +.-.++|..+-..+...  +..+++..+++++|..+|..+..|..........+ .++++...+++++..+|++..+|..
T Consensus        34 ~~~~~a~~~~ra~l~~~--e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~  111 (320)
T PLN02789         34 PEFREAMDYFRAVYASD--ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHH  111 (320)
T ss_pred             HHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHH
Confidence            33344554444444444  56788999999999999999999988877777776 5789999999999999999999987


Q ss_pred             HHHHHHhhCCC--hHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCc
Q 001619          113 YCSLSMSTFED--PNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSK  177 (1043)
Q Consensus       113 Y~~~~~~~~~~--~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~  177 (1043)
                      ..-++... +.  .+.+...+++|+..-|.   ....|..-.-.....+.++.+...+.++|++...
T Consensus       112 R~~~l~~l-~~~~~~~el~~~~kal~~dpk---Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~  174 (320)
T PLN02789        112 RRWLAEKL-GPDAANKELEFTRKILSLDAK---NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR  174 (320)
T ss_pred             HHHHHHHc-CchhhHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC
Confidence            76555444 33  25667778888876665   3457766665555566677777777777665433

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.44  E-value=0.0011  Score=72.13  Aligned_cols=266  Identities=15%  Similarity=0.144  Sum_probs=166.8

Q ss_pred             HHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCccHHHHH-HHHHHHHH
Q 001619          113 YCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYY-DSFKKLAG  191 (1043)
Q Consensus       113 Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~l~~~~-~~y~~~~~  191 (1043)
                      =++|++..  ..++|..+|-..++.-+.+   .+.=.....+..+.|..++|.+|-.-.+.-|....+... +.+.- . 
T Consensus        42 GlNfLLs~--Q~dKAvdlF~e~l~~d~~t---~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL-~-  114 (389)
T COG2956          42 GLNFLLSN--QPDKAVDLFLEMLQEDPET---FEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQL-G-  114 (389)
T ss_pred             HHHHHhhc--CcchHHHHHHHHHhcCchh---hHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHH-H-
Confidence            34566653  7788888888877744443   355567788888899999999998888887654322111 10000 0 


Q ss_pred             HHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001619          192 AWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFE  271 (1043)
Q Consensus       192 ~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE  271 (1043)
                                                             +||+ .+|-++||..++...                     
T Consensus       115 ---------------------------------------~Dym-~aGl~DRAE~~f~~L---------------------  133 (389)
T COG2956         115 ---------------------------------------RDYM-AAGLLDRAEDIFNQL---------------------  133 (389)
T ss_pred             ---------------------------------------HHHH-HhhhhhHHHHHHHHH---------------------
Confidence                                                   0010 112233333333211                     


Q ss_pred             HHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCC-----cHHHHHHHHHHHHHcCChHHHHHHH
Q 001619          272 NLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCAD-----YPEFWMRYVDFMESKGGREIASYAL  346 (1043)
Q Consensus       272 ~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~-----~~~LWl~yAk~~e~~g~~e~Ar~il  346 (1043)
                        +..        ...-...-..++.++....+.++|+.+-++.++..+.     -..+++.+|.-+.-..+++.|+..+
T Consensus       134 --~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l  203 (389)
T COG2956         134 --VDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL  203 (389)
T ss_pred             --hcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence              100        0001122233344444444555566666666654332     2466888888888888999999999


Q ss_pred             HHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 001619          347 DRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFI-EKVTFKANMERRLGNFVAACDTYKEALETAAE  425 (1043)
Q Consensus       347 erA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~-~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~  425 (1043)
                      .||+.. .|+|...-+..++++...|++.+|.+.+++.+.. .+.++ ++.-........+|..++.+..+.++++.   
T Consensus       204 ~kAlqa-~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---  278 (389)
T COG2956         204 KKALQA-DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---  278 (389)
T ss_pred             HHHHhh-CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---
Confidence            999988 7788888889999999999999999999999864 45554 34444445556779999999999999996   


Q ss_pred             hccCCccHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCC
Q 001619          426 QRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPD  476 (1043)
Q Consensus       426 ~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~~~p~  476 (1043)
                         +++.. +-        +...+++....+   ++.|..++-+-|...|+
T Consensus       279 ---~~g~~-~~--------l~l~~lie~~~G---~~~Aq~~l~~Ql~r~Pt  314 (389)
T COG2956         279 ---NTGAD-AE--------LMLADLIELQEG---IDAAQAYLTRQLRRKPT  314 (389)
T ss_pred             ---cCCcc-HH--------HHHHHHHHHhhC---hHHHHHHHHHHHhhCCc
Confidence               33322 11        112333333333   34688888888887776

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.44  E-value=4.4e-06  Score=83.39  Aligned_cols=111  Identities=11%  Similarity=-0.049  Sum_probs=93.0

Q ss_pred             CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHH
Q 001619          284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLF  363 (1043)
Q Consensus       284 ~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~  363 (1043)
                      ++|+.   |..++......|+++++...|.+++...|.....|...+..+...|++++|...|++|+.. .|+.+..|+.
T Consensus        22 ~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-~p~~~~a~~~   97 (144)
T PRK15359         22 VDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML-DASHPEPVYQ   97 (144)
T ss_pred             cCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCCcHHHHH
Confidence            45664   5555666667899999999999999999999999999999999999999999999999976 7888899999


Q ss_pred             HHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHH
Q 001619          364 NARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFK  399 (1043)
Q Consensus       364 ~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~  399 (1043)
                      ++......|++++|+..|.+++.. .|+....|...
T Consensus        98 lg~~l~~~g~~~eAi~~~~~Al~~-~p~~~~~~~~~  132 (144)
T PRK15359         98 TGVCLKMMGEPGLAREAFQTAIKM-SYADASWSEIR  132 (144)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHH
Confidence            999999999999999999999863 45555555443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.43  E-value=3.5e-05  Score=91.10  Aligned_cols=211  Identities=13%  Similarity=0.070  Sum_probs=144.9

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhcc--------CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc------
Q 001619          290 KNWHDYLSFAEKQGDFDWVVKLYERCLIP--------CADYPEFWMRYVDFMESKGGREIASYALDRATQIFLK------  355 (1043)
Q Consensus       290 ~~W~~yi~~e~~~g~~e~~~~lyerAl~~--------~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~------  355 (1043)
                      ..-..++.++...++++.+..+|++|+..        ++....+..+.+..|-+.|++++|+..++||++++.+      
T Consensus       242 ~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~  321 (508)
T KOG1840|consen  242 SMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASH  321 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCh
Confidence            34445788888899999999999999963        4666788999999999999999999999999998654      


Q ss_pred             -ccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCC-------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc
Q 001619          356 -RLPVIHLFNARYKEQIGDTSAARAAFPESYIDS-------DSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQR  427 (1043)
Q Consensus       356 -~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~-------~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~  427 (1043)
                       ..+......+......+.++.|..+|.++++..       .+....+...++.+....|.+++|+++|++||.......
T Consensus       322 ~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~  401 (508)
T KOG1840|consen  322 PEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL  401 (508)
T ss_pred             HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc
Confidence             223456666777788899999999998887621       124456888889999999999999999999999865432


Q ss_pred             c--CCccHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcC----CCccccCChhhHHHHHHHHHHHHHHcC
Q 001619          428 K--FHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSR----PDVLKVFSLEDVEDISSLYLQFLDLCG  501 (1043)
Q Consensus       428 ~--~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~~~----p~~~~~l~~~~~~~l~~lwl~fee~~G  501 (1043)
                      .  .+.       ++..+|.....+++...    .+.|-.+|++++.-.    |+.      -+....+.--+..-+..|
T Consensus       402 ~~~~~~-------~~~~l~~la~~~~~~k~----~~~a~~l~~~~~~i~~~~g~~~------~~~~~~~~nL~~~Y~~~g  464 (508)
T KOG1840|consen  402 GKKDYG-------VGKPLNQLAEAYEELKK----YEEAEQLFEEAKDIMKLCGPDH------PDVTYTYLNLAALYRAQG  464 (508)
T ss_pred             cCcChh-------hhHHHHHHHHHHHHhcc----cchHHHHHHHHHHHHHHhCCCC------CchHHHHHHHHHHHHHcc
Confidence            2  111       12233332233322211    223455555554321    222      112233334444446679


Q ss_pred             CHHHHHHHHHHHHhhC
Q 001619          502 TIHDIRNAWNQHIKLF  517 (1043)
Q Consensus       502 ~~~~a~~~~~ra~k~~  517 (1043)
                      +.+.|.++..+++..-
T Consensus       465 ~~e~a~~~~~~~~~~~  480 (508)
T KOG1840|consen  465 NYEAAEELEEKVLNAR  480 (508)
T ss_pred             cHHHHHHHHHHHHHHH
Confidence            9999999998888653

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.41  E-value=1.2e-05  Score=99.48  Aligned_cols=147  Identities=8%  Similarity=-0.049  Sum_probs=134.2

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 001619           25 GLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSAT  104 (1043)
Q Consensus        25 ~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P  104 (1043)
                      .+...+++.|.+.++...+++.....  +..+++..++++++...|.+...|..++....+.+.+++|...++++|...|
T Consensus        74 ~~~~~~~~~~~~~~~~~~La~i~~~~--g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p  151 (694)
T PRK15179         74 ELLDYVRRYPHTELFQVLVARALEAA--HRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS  151 (694)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHc--CCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC
Confidence            45556778899999999999987777  8999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCc
Q 001619          105 YSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSK  177 (1043)
Q Consensus       105 ~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~  177 (1043)
                      .+...-..++..+... +.+++|..+|+|++...|.   ....|..|....+..|..+.|...|++++..-..
T Consensus       152 ~~~~~~~~~a~~l~~~-g~~~~A~~~y~~~~~~~p~---~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~  220 (694)
T PRK15179        152 SSAREILLEAKSWDEI-GQSEQADACFERLSRQHPE---FENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD  220 (694)
T ss_pred             CCHHHHHHHHHHHHHh-cchHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence            9999999999999888 9999999999999984443   5689999999999999999999999999875433

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.40  E-value=9e-06  Score=79.74  Aligned_cols=115  Identities=13%  Similarity=0.225  Sum_probs=102.7

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 001619           24 QGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSA  103 (1043)
Q Consensus        24 ~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~  103 (1043)
                      +.|+++|..+|.+...-..++..+...  ++.+++...|++++..+|.+...|...+......+++++|..+|++++...
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   81 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQ--GRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD   81 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            468899999999988777766666555  789999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCC
Q 001619          104 TYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKD  141 (1043)
Q Consensus       104 P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~  141 (1043)
                      |.+++.|..++.+.... ++.+.|...|+++++..|.+
T Consensus        82 p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~  118 (135)
T TIGR02552        82 PDDPRPYFHAAECLLAL-GEPESALKALDLAIEICGEN  118 (135)
T ss_pred             CCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcccc
Confidence            99999999999888877 89999999999999988764

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PLN02789 farnesyltranstransferase

Probab=98.34  E-value=6.8e-05  Score=84.75  Aligned_cols=177  Identities=10%  Similarity=-0.005  Sum_probs=133.5

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHhcccchHHHHHHH
Q 001619          288 QLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKG-GREIASYALDRATQIFLKRLPVIHLFNAR  366 (1043)
Q Consensus       288 ~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g-~~e~Ar~ilerA~~~~~~~~p~iwl~~A~  366 (1043)
                      -.++|--+-..+...+..++|..+++++|..+|.+..+|......+...| ++++|...+++++.. .+++..+|.....
T Consensus        36 ~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~-npknyqaW~~R~~  114 (320)
T PLN02789         36 FREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED-NPKNYQIWHHRRW  114 (320)
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH-CCcchHHhHHHHH
Confidence            33444444445555778899999999999999999999999999998888 689999999999987 6677778887777


Q ss_pred             HHHHhCCH--HHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHH
Q 001619          367 YKEQIGDT--SAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTY  444 (1043)
Q Consensus       367 ~E~~~g~~--d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~  444 (1043)
                      +..+.|..  +++..++.+++. ..++...+|....-+...+|.++++.+.++++|+.      .+.....|....... 
T Consensus       115 ~l~~l~~~~~~~el~~~~kal~-~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~------d~~N~sAW~~R~~vl-  186 (320)
T PLN02789        115 LAEKLGPDAANKELEFTRKILS-LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE------DVRNNSAWNQRYFVI-  186 (320)
T ss_pred             HHHHcCchhhHHHHHHHHHHHH-hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH------CCCchhHHHHHHHHH-
Confidence            77777763  788999999996 46777889999988999999999999999999997      666666664432111 


Q ss_pred             HHHHHHHHHhCCC-chHHHHHHHHHHHhhcCCCc
Q 001619          445 TELIKFTMVHGGR-SHISIVDAVISNALYSRPDV  477 (1043)
Q Consensus       445 ~~~~~fe~~~g~~-~~leraR~l~erAl~~~p~~  477 (1043)
                         .++. ..|+. ..++..-..+.++|..+|++
T Consensus       187 ---~~~~-~l~~~~~~~e~el~y~~~aI~~~P~N  216 (320)
T PLN02789        187 ---TRSP-LLGGLEAMRDSELKYTIDAILANPRN  216 (320)
T ss_pred             ---Hhcc-ccccccccHHHHHHHHHHHHHhCCCC
Confidence               1110 01221 12345667778999999987

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.33  E-value=5.1e-05  Score=81.90  Aligned_cols=133  Identities=11%  Similarity=0.138  Sum_probs=86.5

Q ss_pred             CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC-------CCCH-HH-HHH-HHHHHHHcCCHHHHHHHHHHHHHhc
Q 001619           34 SLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEF-------PLCY-GY-WRK-YADHKARLCSIDKVVEVFERAVQSA  103 (1043)
Q Consensus        34 P~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~-------P~s~-~l-W~~-y~~~e~~~~~~e~a~~lfeRAL~~~  103 (1043)
                      |.-++....|+-+.+    +|+.++.......++..       -..+ +. |+. ..+...++|-+.+|.+-|..+|+..
T Consensus       178 p~l~kaLFey~fyhe----nDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~  253 (478)
T KOG1129|consen  178 PTLVKALFEYLFYHE----NDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQF  253 (478)
T ss_pred             hHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcC
Confidence            344555555665555    46666553333322211       1122 33 332 3445667788889999999999986


Q ss_pred             CCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCC
Q 001619          104 TYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFP  175 (1043)
Q Consensus       104 P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p  175 (1043)
                      | +++-++-+.+...+. +.++.|..+|...|+..|.+.   .+-...++.-+.-++.+.+.++|++.++..
T Consensus       254 ~-~~dTfllLskvY~ri-dQP~~AL~~~~~gld~fP~~V---T~l~g~ARi~eam~~~~~a~~lYk~vlk~~  320 (478)
T KOG1129|consen  254 P-HPDTFLLLSKVYQRI-DQPERALLVIGEGLDSFPFDV---TYLLGQARIHEAMEQQEDALQLYKLVLKLH  320 (478)
T ss_pred             C-chhHHHHHHHHHHHh-ccHHHHHHHHhhhhhcCCchh---hhhhhhHHHHHHHHhHHHHHHHHHHHHhcC
Confidence            6 788877777777666 788889999999999888753   344444555555667788888888888753

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.32  E-value=0.0012  Score=80.69  Aligned_cols=97  Identities=12%  Similarity=0.051  Sum_probs=67.0

Q ss_pred             ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHH
Q 001619          285 DDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFN  364 (1043)
Q Consensus       285 ~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~  364 (1043)
                      ..++...|..+.-+ ...|++.-+...|-+++...|.....|.+++.....+.|++-|..+|.++..+ .|.+-.-|+.-
T Consensus       813 ~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL-dP~nl~~WlG~  890 (1238)
T KOG1127|consen  813 CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL-DPLNLVQWLGE  890 (1238)
T ss_pred             hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhc-CchhhHHHHHH
Confidence            34566677666544 32356777777777777777777777777777777777777777777777655 44555567777


Q ss_pred             HHHHHHhCCHHHHHHHHHh
Q 001619          365 ARYKEQIGDTSAARAAFPE  383 (1043)
Q Consensus       365 A~~E~~~g~~d~Ar~ll~r  383 (1043)
                      |.+-+..|++-++..+|..
T Consensus       891 Ali~eavG~ii~~~~lfaH  909 (1238)
T KOG1127|consen  891 ALIPEAVGRIIERLILFAH  909 (1238)
T ss_pred             HHhHHHHHHHHHHHHHHHh
Confidence            7777777777777777766

>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]

Probab=98.30  E-value=1.6e-06  Score=106.47  Aligned_cols=12  Identities=17%  Similarity=0.299  Sum_probs=5.9

Q ss_pred             CcccCCCCCccc
Q 001619          800 NWHEQQNPDRVH  811 (1043)
Q Consensus       800 n~~~~~~~~~~~  811 (1043)
                      ..|+++..+.++
T Consensus      1963 ~vhq~~p~~~~~ 1974 (2220)
T KOG3598|consen 1963 KVHQRNPLNRKK 1974 (2220)
T ss_pred             ceeecCcchHHH
Confidence            355555555544

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.30  E-value=4.2e-05  Score=88.62  Aligned_cols=227  Identities=14%  Similarity=0.122  Sum_probs=141.7

Q ss_pred             HHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhh
Q 001619           84 ARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSS  163 (1043)
Q Consensus        84 ~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~  163 (1043)
                      ++.|++.+|.-+||-||...|.+.+.|..+...-..+ ++...|...|.||++.-|....  .+-.+.+.+.. .|.-..
T Consensus       296 m~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaEN-E~E~~ai~AL~rcl~LdP~Nle--aLmaLAVSytN-eg~q~~  371 (579)
T KOG1125|consen  296 MKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAEN-ENEQNAISALRRCLELDPTNLE--ALMALAVSYTN-EGLQNQ  371 (579)
T ss_pred             HhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhc-cchHHHHHHHHHHHhcCCccHH--HHHHHHHHHhh-hhhHHH
Confidence            4567889999999999999999999999888776666 6677799999999987776431  22222222221 222233


Q ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccc--cCccchhhhHHHHhhcCCchhhH
Q 001619          164 LAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVP--AYYKDDETSSVIKDLLDPSVDLV  241 (1043)
Q Consensus       164 a~~iy~raL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~--~~~~~~e~~~~i~~~~~~~~~~e  241 (1043)
                      |.+.+.+.|...+...+         +..                  .-.++...  ..+.+..             .  
T Consensus       372 Al~~L~~Wi~~~p~y~~---------l~~------------------a~~~~~~~~~~s~~~~~-------------~--  409 (579)
T KOG1125|consen  372 ALKMLDKWIRNKPKYVH---------LVS------------------AGENEDFENTKSFLDSS-------------H--  409 (579)
T ss_pred             HHHHHHHHHHhCccchh---------ccc------------------cCccccccCCcCCCCHH-------------H--
Confidence            44444444321110000         000                  00000000  0000000             0  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCh--HHHHHHHHHHHHHHHcCChHHHHHHHHHHhccC
Q 001619          242 RSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDD--IQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPC  319 (1043)
Q Consensus       242 ~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p--~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~  319 (1043)
                                     +.+..+.+      -.+.+        ..|  .+.++-..+.-++-..|++++++..|+-||...
T Consensus       410 ---------------l~~i~~~f------Leaa~--------~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~  460 (579)
T KOG1125|consen  410 ---------------LAHIQELF------LEAAR--------QLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK  460 (579)
T ss_pred             ---------------HHHHHHHH------HHHHH--------hCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC
Confidence                           00001111      11111        112  234555555555555789999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhh
Q 001619          320 ADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYI  386 (1043)
Q Consensus       320 ~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~  386 (1043)
                      |....||-++.-.+......++|...|.||+.+ .|.+-.+|...+--....|.|++|.+-|-.|+.
T Consensus       461 Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL-qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~  526 (579)
T KOG1125|consen  461 PNDYLLWNRLGATLANGNRSEEAISAYNRALQL-QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS  526 (579)
T ss_pred             CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc-CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence            999999999999998878899999999999997 555556666666666778888888888888875

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.23  E-value=0.0013  Score=78.88  Aligned_cols=292  Identities=11%  Similarity=0.076  Sum_probs=169.2

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----HcCCHHHHHHHHHHHH
Q 001619           26 LEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKA-----RLCSIDKVVEVFERAV  100 (1043)
Q Consensus        26 le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~-----~~~~~e~a~~lfeRAL  100 (1043)
                      |++......+.+..-...++.+-+.  |..+++..+|+..|..+|.+..+...+.....     ...+.+....+|+..-
T Consensus        27 L~~~~~~I~Dk~~~~E~rA~ll~kL--g~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~  104 (517)
T PF12569_consen   27 LEKNEKQILDKLAVLEKRAELLLKL--GRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELA  104 (517)
T ss_pred             HHhhhhhCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHH
Confidence            3333333344444444446666667  89999999999999999999999999988762     1235778888999888


Q ss_pred             HhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCccH
Q 001619          101 QSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSF-VGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKL  179 (1043)
Q Consensus       101 ~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~-lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~l  179 (1043)
                      ...|.+.-+=..=+.|.... .-.+.+...+.+.|+. +|      .+......+.........+..|+...        
T Consensus       105 ~~yp~s~~~~rl~L~~~~g~-~F~~~~~~yl~~~l~KgvP------slF~~lk~Ly~d~~K~~~i~~l~~~~--------  169 (517)
T PF12569_consen  105 EKYPRSDAPRRLPLDFLEGD-EFKERLDEYLRPQLRKGVP------SLFSNLKPLYKDPEKAAIIESLVEEY--------  169 (517)
T ss_pred             HhCccccchhHhhcccCCHH-HHHHHHHHHHHHHHhcCCc------hHHHHHHHHHcChhHHHHHHHHHHHH--------
Confidence            88887654322222222100 0012233333333332 22      23222222222111111111121111        


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCcc-chhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHH
Q 001619          180 HHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYK-DDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYK  258 (1043)
Q Consensus       180 ~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~-~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~  258 (1043)
                                ...+.                  ..+.+...-+ ..+..              .+ .+.. .......|+
T Consensus       170 ----------~~~l~------------------~~~~~~~~~~~~~~~p--------------~~-~lw~-~~~lAqhyd  205 (517)
T PF12569_consen  170 ----------VNSLE------------------SNGSFSNGDDEEKEPP--------------ST-LLWT-LYFLAQHYD  205 (517)
T ss_pred             ----------HHhhc------------------ccCCCCCccccccCCc--------------hH-HHHH-HHHHHHHHH
Confidence                      11100                  0000000000 00000              00 0000 011233344


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCC
Q 001619          259 EASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGG  338 (1043)
Q Consensus       259 ~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~  338 (1043)
                      ..+....++..++++|.        .+|+.++++..-+.+++..|++..|...++.|-......--|=...++++.+.|+
T Consensus       206 ~~g~~~~Al~~Id~aI~--------htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~  277 (517)
T PF12569_consen  206 YLGDYEKALEYIDKAIE--------HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGR  277 (517)
T ss_pred             HhCCHHHHHHHHHHHHh--------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCC
Confidence            44455556666777775        5689999999999999999999999999999999888888888899999999999


Q ss_pred             hHHHHHHHHHHHHHHh---cccc---hHHH--HHHHHHHHhCCHHHHHHHHHhhhh
Q 001619          339 REIASYALDRATQIFL---KRLP---VIHL--FNARYKEQIGDTSAARAAFPESYI  386 (1043)
Q Consensus       339 ~e~Ar~ilerA~~~~~---~~~p---~iwl--~~A~~E~~~g~~d~Ar~ll~ral~  386 (1043)
                      +++|..++..-++.-.   .+.-   -+|+  +.|+-..|.|++..|.+-|....+
T Consensus       278 ~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k  333 (517)
T PF12569_consen  278 IEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK  333 (517)
T ss_pred             HHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            9999998865443210   0111   2444  456777899999999888776654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.22  E-value=6e-05  Score=81.35  Aligned_cols=222  Identities=15%  Similarity=0.131  Sum_probs=155.2

Q ss_pred             CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHH
Q 001619           53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFK  132 (1043)
Q Consensus        53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lfe  132 (1043)
                      +-..++.+-+...|+.+|. ++.+.-+.+...+.+..+.|..+|...|..+|..|.+-+.-++..... ++.+++.++|+
T Consensus       237 gm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam-~~~~~a~~lYk  314 (478)
T KOG1129|consen  237 GMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM-EQQEDALQLYK  314 (478)
T ss_pred             cChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH-HhHHHHHHHHH
Confidence            5667788899999999986 667777777777778899999999999999999999999999987777 78999999999


Q ss_pred             HHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q 001619          133 RALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELV  212 (1043)
Q Consensus       133 rAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i  212 (1043)
                      ++++.-+.+.++.. -+..--|.  -++.|.|.+.|+|.|..-...-+    .|+.        |.        .++ + 
T Consensus       315 ~vlk~~~~nvEaiA-cia~~yfY--~~~PE~AlryYRRiLqmG~~spe----Lf~N--------ig--------LCC-~-  369 (478)
T KOG1129|consen  315 LVLKLHPINVEAIA-CIAVGYFY--DNNPEMALRYYRRILQMGAQSPE----LFCN--------IG--------LCC-L-  369 (478)
T ss_pred             HHHhcCCccceeee-eeeecccc--CCChHHHHHHHHHHHHhcCCChH----HHhh--------HH--------HHH-H-
Confidence            99998777543100 00000011  25678899999999874322111    1111        00        000 0 


Q ss_pred             hccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHH
Q 001619          213 LEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNW  292 (1043)
Q Consensus       213 ~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W  292 (1043)
                                                                    -+...+..+..|++++...     .......++|
T Consensus       370 ----------------------------------------------yaqQ~D~~L~sf~RAlsta-----t~~~~aaDvW  398 (478)
T KOG1129|consen  370 ----------------------------------------------YAQQIDLVLPSFQRALSTA-----TQPGQAADVW  398 (478)
T ss_pred             ----------------------------------------------hhcchhhhHHHHHHHHhhc-----cCcchhhhhh
Confidence                                                          0011122233455544211     0123445788


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001619          293 HDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQI  352 (1043)
Q Consensus       293 ~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~  352 (1043)
                      .++......-||+..+...|.-||..++++.+...+.+-+..+.|+++.||.+|.-|..+
T Consensus       399 YNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~  458 (478)
T KOG1129|consen  399 YNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV  458 (478)
T ss_pred             hccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence            887766666788999999999999988999888899998888899999999999888766

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.22  E-value=2.3e-05  Score=76.84  Aligned_cols=111  Identities=14%  Similarity=-0.072  Sum_probs=89.9

Q ss_pred             HHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCC
Q 001619          310 KLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSD  389 (1043)
Q Consensus       310 ~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~  389 (1043)
                      .+|++++...|+....-+.++..+...|++++|...|++++.. .+..+.+|...+.+....|+++.|..+|.+++.. .
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~   81 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY-DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL-D   81 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C
Confidence            4678888888877777777777778888888888888888776 5667788888888888888888888888888753 4


Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619          390 SRFIEKVTFKANMERRLGNFVAACDTYKEALET  422 (1043)
Q Consensus       390 ~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~  422 (1043)
                      ++....|...+.+....|++++|...|+++++.
T Consensus        82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        82 PDDPRPYFHAAECLLALGEPESALKALDLAIEI  114 (135)
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            556677777778888888888888888888886

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.19  E-value=0.00032  Score=83.32  Aligned_cols=122  Identities=14%  Similarity=0.022  Sum_probs=100.9

Q ss_pred             cCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHH
Q 001619          302 QGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAF  381 (1043)
Q Consensus       302 ~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll  381 (1043)
                      .++++.+...|++.+..++-....|..+.......++...|.+.|.|++.. -|+..+-|-..+....+.|.-.+|+..+
T Consensus       498 ~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL-~Pd~~eaWnNls~ayi~~~~k~ra~~~l  576 (777)
T KOG1128|consen  498 NKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL-EPDNAEAWNNLSTAYIRLKKKKRAFRKL  576 (777)
T ss_pred             chhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc-CCCchhhhhhhhHHHHHHhhhHHHHHHH
Confidence            577888888888888888888888888888888888888888888888876 6677778888888888888888888888


Q ss_pred             HhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 001619          382 PESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAE  425 (1043)
Q Consensus       382 ~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~  425 (1043)
                      .+|++. ....+.+|..|+-+-...|.++.|.+.|.+.++..+.
T Consensus       577 ~EAlKc-n~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~  619 (777)
T KOG1128|consen  577 KEALKC-NYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK  619 (777)
T ss_pred             HHHhhc-CCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence            888863 4667788888888888888888888888888887543

>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]

Probab=98.19  E-value=1.1e-06  Score=107.76  Aligned_cols=8  Identities=13%  Similarity=-0.080  Sum_probs=3.1

Q ss_pred             chhccccC
Q 001619          824 KRQHQQRR  831 (1043)
Q Consensus       824 ~~~~q~~~  831 (1043)
                      .+.+|+..
T Consensus      1990 ~glqqa~g 1997 (2220)
T KOG3598|consen 1990 AGLQQAMG 1997 (2220)
T ss_pred             hhhhhccC
Confidence            33444433

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.19  E-value=0.00011  Score=91.75  Aligned_cols=152  Identities=11%  Similarity=0.007  Sum_probs=125.7

Q ss_pred             CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhccc------
Q 001619          284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRL------  357 (1043)
Q Consensus       284 ~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~------  357 (1043)
                      .+|.+..+|...+..+...++++.|..+.+.++..+|+...+|+..+-.+...++.++|..+  +++..+..+.      
T Consensus        26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve  103 (906)
T PRK14720         26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE  103 (906)
T ss_pred             CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence            56899999999999998899999999999999999999999999999988888888877766  6666644332      


Q ss_pred             ------------chHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 001619          358 ------------PVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAE  425 (1043)
Q Consensus       358 ------------p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~  425 (1043)
                                  .......|.+..+.|+.++|..+|++++.- .++.+.+.-.||.+.... ++++|+.++.+|+...+.
T Consensus       104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~-D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~  181 (906)
T PRK14720        104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA-DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIK  181 (906)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHh
Confidence                        134555678888999999999999999964 466666666777666666 999999999999999887


Q ss_pred             hccCCccHHHHHHH
Q 001619          426 QRKFHTLPLLYVQF  439 (1043)
Q Consensus       426 ~~~~p~~~~l~~~~  439 (1043)
                      ...+...-.+|..+
T Consensus       182 ~kq~~~~~e~W~k~  195 (906)
T PRK14720        182 KKQYVGIEEIWSKL  195 (906)
T ss_pred             hhcchHHHHHHHHH
Confidence            77777667777666

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.18  E-value=7.3e-05  Score=80.86  Aligned_cols=138  Identities=8%  Similarity=0.036  Sum_probs=69.7

Q ss_pred             CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH-
Q 001619           34 SLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCY---GYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDV-  109 (1043)
Q Consensus        34 P~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~---~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~L-  109 (1043)
                      +.....+...+..+...  ++.+.+...|++++..+|.+.   ..|...+......+++++|..+|+++++..|.+..+ 
T Consensus        30 ~~~~~~~~~~g~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  107 (235)
T TIGR03302        30 EWPAEELYEEAKEALDS--GDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD  107 (235)
T ss_pred             cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence            44455555555444444  556666666666666666554   345555555555566666666666666666655542 


Q ss_pred             --HHHHHHHHHhh-------CCChHHHHHHHHHHHHhcCCCCCcHHHH--------------HHHHHHHHHhhhhhhHHH
Q 001619          110 --WFHYCSLSMST-------FEDPNDVRRLFKRALSFVGKDYLCHTMW--------------DKYIEFEISQQRWSSLAQ  166 (1043)
Q Consensus       110 --Wl~Y~~~~~~~-------~~~~e~ar~lferAL~~lp~~~~s~~IW--------------~~yi~fe~~~~~~e~a~~  166 (1043)
                        |...+......       .++.+.|.+.|+++++.-|.+.......              ...+.+....|++..+..
T Consensus       108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~  187 (235)
T TIGR03302       108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAIN  187 (235)
T ss_pred             HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence              22222222110       0234556666666666555432111100              122344445566666666


Q ss_pred             HHHHHhc
Q 001619          167 IFVQTLR  173 (1043)
Q Consensus       167 iy~raL~  173 (1043)
                      .|.+++.
T Consensus       188 ~~~~al~  194 (235)
T TIGR03302       188 RFETVVE  194 (235)
T ss_pred             HHHHHHH
Confidence            6666654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.18  E-value=0.0054  Score=73.40  Aligned_cols=97  Identities=18%  Similarity=0.186  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHhcc-------C--C------------CcHHHHHHHHHHHHHcCChHHHHHHHH
Q 001619          289 LKNWHDYLSFAEKQGDFDWVVKLYERCLIP-------C--A------------DYPEFWMRYVDFMESKGGREIASYALD  347 (1043)
Q Consensus       289 ~~~W~~yi~~e~~~g~~e~~~~lyerAl~~-------~--~------------~~~~LWl~yAk~~e~~g~~e~Ar~ile  347 (1043)
                      ..+|.=+..|++..|+.+.|+.+|+.|--.       |  +            .....-+..|+.||..|++-+|...|.
T Consensus       912 ~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfT  991 (1416)
T KOG3617|consen  912 ESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFT  991 (1416)
T ss_pred             hHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            356666677888899999999999998632       1  1            122346677888999999999999998


Q ss_pred             HHHHHH-----hccc---chHH-----------HHHHHHHHHh-CCHHHHHHHHHhhh
Q 001619          348 RATQIF-----LKRL---PVIH-----------LFNARYKEQI-GDTSAARAAFPESY  385 (1043)
Q Consensus       348 rA~~~~-----~~~~---p~iw-----------l~~A~~E~~~-g~~d~Ar~ll~ral  385 (1043)
                      ||-...     ++.+   ..+|           ...|.|.+.. |++++|..+|.+|-
T Consensus       992 rAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAG 1049 (1416)
T KOG3617|consen  992 RAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAG 1049 (1416)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhc
Confidence            875421     1211   1122           2244554444 48899999998873

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.16  E-value=0.026  Score=66.20  Aligned_cols=128  Identities=13%  Similarity=0.096  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCHHHHHHHHHH
Q 001619           38 DEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQS-ATYSVDVWFHYCSL  116 (1043)
Q Consensus        38 ~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~-~P~s~~LWl~Y~~~  116 (1043)
                      .+|..+=.+.. .  ++++++..+..+.|...|+.....+.-+-..+..+.|++|.++.++-... ...+.-+=.+||.|
T Consensus        14 ~l~t~ln~~~~-~--~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Y   90 (652)
T KOG2376|consen   14 ALLTDLNRHGK-N--GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEY   90 (652)
T ss_pred             HHHHHHHHhcc-c--hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHH
Confidence            55666544333 3  78999999999999999999987776666667777888888776654432 12233366788877


Q ss_pred             HHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCc
Q 001619          117 SMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSK  177 (1043)
Q Consensus       117 ~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~  177 (1043)
                      -.   +..+.|.+.++      +.+.....+-..++...-+.++++.+..||+..++....
T Consensus        91 rl---nk~Dealk~~~------~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d  142 (652)
T KOG2376|consen   91 RL---NKLDEALKTLK------GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD  142 (652)
T ss_pred             Hc---ccHHHHHHHHh------cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc
Confidence            44   45777777776      222223457777888888899999999999999875433

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.13  E-value=0.022  Score=64.02  Aligned_cols=319  Identities=14%  Similarity=0.029  Sum_probs=206.3

Q ss_pred             HHHHHHhCCCCHHHHHHH----------HHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001619           26 LEEFIAEGSLDFDEWTSL----------LSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEV   95 (1043)
Q Consensus        26 le~~i~~nP~d~~~W~~~----------i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~l   95 (1043)
                      +-..|..-|.....|.+.          .+-+.+..+|++.++.+...|.-+.-+...-..+..++..-..|+++++...
T Consensus        61 ~l~~v~~~~~~~~~w~~~rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~y  140 (400)
T COG3071          61 LLRRVLRTPAHTRGWFSRRKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRY  140 (400)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHH
Confidence            344556778888888873          2223333458899998888888888888777777777777777899999999


Q ss_pred             HHHHHHhcCC-CHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcC
Q 001619           96 FERAVQSATY-SVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRF  174 (1043)
Q Consensus        96 feRAL~~~P~-s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~  174 (1043)
                      +.+|-+.-++ ..-.-+..++.+... +++..||.-.+.+++.-|.   ..++-....+.....|++..+-++....-+-
T Consensus       141 L~eaae~~~~~~l~v~ltrarlll~~-~d~~aA~~~v~~ll~~~pr---~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka  216 (400)
T COG3071         141 LAEAAELAGDDTLAVELTRARLLLNR-RDYPAARENVDQLLEMTPR---HPEVLRLALRAYIRLGAWQALLAILPKLRKA  216 (400)
T ss_pred             HHHHhccCCCchHHHHHHHHHHHHhC-CCchhHHHHHHHHHHhCcC---ChHHHHHHHHHHHHhccHHHHHHHHHHHHHc
Confidence            9999998332 234455556666666 8888999999998887665   4466666667667777777777666655432


Q ss_pred             CCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHH
Q 001619          175 PSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGE  254 (1043)
Q Consensus       175 p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~  254 (1043)
                      -..+ ...+..|+...-.             ..+.+...         +. ....+.+|                     
T Consensus       217 ~~l~-~~e~~~le~~a~~-------------glL~q~~~---------~~-~~~gL~~~---------------------  251 (400)
T COG3071         217 GLLS-DEEAARLEQQAWE-------------GLLQQARD---------DN-GSEGLKTW---------------------  251 (400)
T ss_pred             cCCC-hHHHHHHHHHHHH-------------HHHHHHhc---------cc-cchHHHHH---------------------
Confidence            1110 1111112111100             00000000         00 00001111                     


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Q 001619          255 QIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFME  334 (1043)
Q Consensus       255 ~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e  334 (1043)
                        |+.          .-..+           .++..+=..|+..+...|+.+.|..+.+.+++..-+..  -+.++.+ .
T Consensus       252 --W~~----------~pr~l-----------r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~-l  305 (400)
T COG3071         252 --WKN----------QPRKL-----------RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPR-L  305 (400)
T ss_pred             --HHh----------ccHHh-----------hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhh-c
Confidence              100          00011           12344556777777788999999999999998754443  2222222 1


Q ss_pred             HcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHH
Q 001619          335 SKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACD  414 (1043)
Q Consensus       335 ~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~  414 (1043)
                      .-++.+.-.+..++.++. .++.|.+|...+.+..+++.+.+|...|+.|++....  ..-|...++.....|....|-.
T Consensus       306 ~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s--~~~~~~la~~~~~~g~~~~A~~  382 (400)
T COG3071         306 RPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS--ASDYAELADALDQLGEPEEAEQ  382 (400)
T ss_pred             CCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC--hhhHHHHHHHHHHcCChHHHHH
Confidence            346777777788888876 6788899999999999999999999999999875333  3446666677788899999999


Q ss_pred             HHHHHHHH
Q 001619          415 TYKEALET  422 (1043)
Q Consensus       415 lyekale~  422 (1043)
                      ++++++-.
T Consensus       383 ~r~e~L~~  390 (400)
T COG3071         383 VRREALLL  390 (400)
T ss_pred             HHHHHHHH
Confidence            99999965

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.11  E-value=0.00077  Score=71.13  Aligned_cols=186  Identities=13%  Similarity=0.201  Sum_probs=133.7

Q ss_pred             CCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhh--CCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhh
Q 001619           87 CSIDKVVEVFERAVQSATYS---VDVWFHYCSLSMST--FEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRW  161 (1043)
Q Consensus        87 ~~~e~a~~lfeRAL~~~P~s---~~LWl~Y~~~~~~~--~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~  161 (1043)
                      .+.+++..+++.-+...+..   .++|.-|=...+--  .+..+.|...+++-.+..|.   |.++=..++-+.+..|.+
T Consensus        26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~---S~RV~~lkam~lEa~~~~  102 (289)
T KOG3060|consen   26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG---SKRVGKLKAMLLEATGNY  102 (289)
T ss_pred             cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC---ChhHHHHHHHHHHHhhch
Confidence            46778888888777765544   68898886654321  15667789999988888876   778999999999999999


Q ss_pred             hhHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhh
Q 001619          162 SSLAQIFVQTLRF-PSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDL  240 (1043)
Q Consensus       162 e~a~~iy~raL~~-p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~  240 (1043)
                      +.|..+|++.|.- |++..     .|+..+..                    ...                    .++..
T Consensus       103 ~~A~e~y~~lL~ddpt~~v-----~~KRKlAi--------------------lka--------------------~GK~l  137 (289)
T KOG3060|consen  103 KEAIEYYESLLEDDPTDTV-----IRKRKLAI--------------------LKA--------------------QGKNL  137 (289)
T ss_pred             hhHHHHHHHHhccCcchhH-----HHHHHHHH--------------------HHH--------------------cCCcH
Confidence            9999999999974 43321     11111100                    000                    00001


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCC
Q 001619          241 VRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCA  320 (1043)
Q Consensus       241 e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~  320 (1043)
                      +..+.+-+|                        ++        .++.+.++|....+++...|+++.|...||+++...|
T Consensus       138 ~aIk~ln~Y------------------------L~--------~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P  185 (289)
T KOG3060|consen  138 EAIKELNEY------------------------LD--------KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQP  185 (289)
T ss_pred             HHHHHHHHH------------------------HH--------HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCC
Confidence            111111111                        01        3567889999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHH
Q 001619          321 DYPEFWMRYVDFMESKG---GREIASYALDRATQI  352 (1043)
Q Consensus       321 ~~~~LWl~yAk~~e~~g---~~e~Ar~ilerA~~~  352 (1043)
                      ..+-+..+||..+...|   +++-||+.|+||+++
T Consensus       186 ~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl  220 (289)
T KOG3060|consen  186 FNPLYFQRLAEVLYTQGGAENLELARKYYERALKL  220 (289)
T ss_pred             CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            99999999999877666   578899999999987

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.11  E-value=0.0016  Score=81.59  Aligned_cols=123  Identities=17%  Similarity=0.119  Sum_probs=72.0

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc--c---cchHHHHHHHH
Q 001619          293 HDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLK--R---LPVIHLFNARY  367 (1043)
Q Consensus       293 ~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~--~---~p~iwl~~A~~  367 (1043)
                      ..++..+.+.|..+++..+|+++|...|+.+.+--.||.++... ++++|+..+.+|+..+..  .   ...+|..+..+
T Consensus       120 ~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~  198 (906)
T PRK14720        120 RTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHY  198 (906)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhc
Confidence            34455556677777777788888777777777777777777766 777888777777776542  1   12344444333


Q ss_pred             HHHhCCHHHHHHHHHhhhhCCC-hh----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619          368 KEQIGDTSAARAAFPESYIDSD-SR----FIEKVTFKANMERRLGNFVAACDTYKEALET  422 (1043)
Q Consensus       368 E~~~g~~d~Ar~ll~ral~~~~-~~----~~~lw~~~a~lE~~~G~~e~Ar~lyekale~  422 (1043)
                      .  ..+++--..+.++.+.... ..    ...+|-.|    +..++++.+..+++++|+.
T Consensus       199 ~--~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y----~~~~~~~~~i~iLK~iL~~  252 (906)
T PRK14720        199 N--SDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPY----KALEDWDEVIYILKKILEH  252 (906)
T ss_pred             C--cccchHHHHHHHHHHhhhccchhHHHHHHHHHHH----hhhhhhhHHHHHHHHHHhc
Confidence            2  2333333333333332111 11    12233333    3445677888888888876

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.09  E-value=0.00042  Score=73.03  Aligned_cols=160  Identities=17%  Similarity=0.076  Sum_probs=124.9

Q ss_pred             cCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHH
Q 001619          302 QGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAF  381 (1043)
Q Consensus       302 ~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll  381 (1043)
                      .|..+-|...+.+.-..+|.+..+=..+|.+++..|..++|..+|++.+.- .|.+..++....-+....|.--.|.+.+
T Consensus        65 ~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d-dpt~~v~~KRKlAilka~GK~l~aIk~l  143 (289)
T KOG3060|consen   65 TGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLED-DPTDTVIRKRKLAILKAQGKNLEAIKEL  143 (289)
T ss_pred             hcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc-CcchhHHHHHHHHHHHHcCCcHHHHHHH
Confidence            566777888888877778999999999999999999999999999988764 3334456666666677788777888877


Q ss_pred             HhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCCchHH
Q 001619          382 PESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHIS  461 (1043)
Q Consensus       382 ~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~le  461 (1043)
                      ..-++.+..+ .+.|...+++....|.+++|.-.|++.+=.      .|..+..+..+|...|.        .|+..+++
T Consensus       144 n~YL~~F~~D-~EAW~eLaeiY~~~~~f~kA~fClEE~ll~------~P~n~l~f~rlae~~Yt--------~gg~eN~~  208 (289)
T KOG3060|consen  144 NEYLDKFMND-QEAWHELAEIYLSEGDFEKAAFCLEELLLI------QPFNPLYFQRLAEVLYT--------QGGAENLE  208 (289)
T ss_pred             HHHHHHhcCc-HHHHHHHHHHHHhHhHHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHH--------HhhHHHHH
Confidence            7777654443 678999999999999999999999998886      66666665555554442        25555688


Q ss_pred             HHHHHHHHHhhcCCCc
Q 001619          462 IVDAVISNALYSRPDV  477 (1043)
Q Consensus       462 raR~l~erAl~~~p~~  477 (1043)
                      .+|..|++|+..||.+
T Consensus       209 ~arkyy~~alkl~~~~  224 (289)
T KOG3060|consen  209 LARKYYERALKLNPKN  224 (289)
T ss_pred             HHHHHHHHHHHhChHh
Confidence            9999999999988854

>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division

Probab=98.07  E-value=4.4e-05  Score=74.17  Aligned_cols=109  Identities=19%  Similarity=0.247  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHhccC---CCcHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHhcc-----c---chHHHHHHHHHHH
Q 001619          306 DWVVKLYERCLIPC---ADYPEFWMRYVDFMESK----GGREIASYALDRATQIFLKR-----L---PVIHLFNARYKEQ  370 (1043)
Q Consensus       306 e~~~~lyerAl~~~---~~~~~LWl~yAk~~e~~----g~~e~Ar~ilerA~~~~~~~-----~---p~iwl~~A~~E~~  370 (1043)
                      +..+.-||..|...   .+.-++|++|+++.+.+    |....-..+++||+..|..+     .   -.+|+.||++.. 
T Consensus         2 ~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~-   80 (126)
T PF08311_consen    2 EQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS-   80 (126)
T ss_dssp             HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS-
T ss_pred             HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc-
Confidence            34566677777542   35567788888877764    34566677888888775432     1   157777776543 


Q ss_pred             hCCHHHHHHHHHhhhhC-CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001619          371 IGDTSAARAAFPESYID-SDSRFIEKVTFKANMERRLGNFVAACDTYKEAL  420 (1043)
Q Consensus       371 ~g~~d~Ar~ll~ral~~-~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekal  420 (1043)
                           .++++|.-+... ...++..+|..||.+.+..|++++|.+||.++|
T Consensus        81 -----~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi  126 (126)
T PF08311_consen   81 -----DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI  126 (126)
T ss_dssp             -----HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             -----CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence                 667777666542 233456678888888888888888888887775

This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.06  E-value=0.00053  Score=74.12  Aligned_cols=193  Identities=13%  Similarity=0.096  Sum_probs=113.1

Q ss_pred             CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcH---HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchH
Q 001619          284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYP---EFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVI  360 (1043)
Q Consensus       284 ~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~---~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~i  360 (1043)
                      .++.....+...+..+...|+++.+...|++++...|...   ..|+..+..+...|+++.|...|+++++. .|+.+.+
T Consensus        28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~  106 (235)
T TIGR03302        28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL-HPNHPDA  106 (235)
T ss_pred             cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-CcCCCch
Confidence            4556677788877777778888888888888887766543   57788888888888888888888888876 3444432


Q ss_pred             ---HHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHH
Q 001619          361 ---HLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYV  437 (1043)
Q Consensus       361 ---wl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~  437 (1043)
                         |...+......                           .....+..|+++.|.+.|+++++.      +|.....+.
T Consensus       107 ~~a~~~~g~~~~~~---------------------------~~~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~  153 (235)
T TIGR03302       107 DYAYYLRGLSNYNQ---------------------------IDRVDRDQTAAREAFEAFQELIRR------YPNSEYAPD  153 (235)
T ss_pred             HHHHHHHHHHHHHh---------------------------cccccCCHHHHHHHHHHHHHHHHH------CCCChhHHH
Confidence               22222222221                           000011123445555555555544      332222211


Q ss_pred             HHHHHHH---------HHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHH
Q 001619          438 QFSRLTY---------TELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRN  508 (1043)
Q Consensus       438 ~~ar~~~---------~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~  508 (1043)
                      .+....+         .....+....|.   ...|...+++++..+|+.      ......+..-.......|+.+.|.+
T Consensus       154 a~~~~~~~~~~~~~~~~~~a~~~~~~g~---~~~A~~~~~~al~~~p~~------~~~~~a~~~l~~~~~~lg~~~~A~~  224 (235)
T TIGR03302       154 AKKRMDYLRNRLAGKELYVARFYLKRGA---YVAAINRFETVVENYPDT------PATEEALARLVEAYLKLGLKDLAQD  224 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHCCCC------cchHHHHHHHHHHHHHcCCHHHHHH
Confidence            1111000         011222223344   457889999999988764      1122334444555566799999999


Q ss_pred             HHHHHHhhCCC
Q 001619          509 AWNQHIKLFPH  519 (1043)
Q Consensus       509 ~~~ra~k~~p~  519 (1043)
                      .+....+.+|.
T Consensus       225 ~~~~l~~~~~~  235 (235)
T TIGR03302       225 AAAVLGANYPD  235 (235)
T ss_pred             HHHHHHhhCCC
Confidence            99888887763

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division

Probab=98.06  E-value=6.5e-05  Score=72.98  Aligned_cols=108  Identities=18%  Similarity=0.361  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhcCC---------CHHHHHHHHHHHHh
Q 001619           56 EMIGLVYDSFLAEFP---LCYGYWRKYADHKARL----CSIDKVVEVFERAVQSATY---------SVDVWFHYCSLSMS  119 (1043)
Q Consensus        56 ~~~r~vyeraL~~~P---~s~~lW~~y~~~e~~~----~~~e~a~~lfeRAL~~~P~---------s~~LWl~Y~~~~~~  119 (1043)
                      +..+..||..|..+.   +-...|..||+|....    +.-.....+++|++..+..         .++||+.|+++.  
T Consensus         2 ~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~--   79 (126)
T PF08311_consen    2 EQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLS--   79 (126)
T ss_dssp             HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTB--
T ss_pred             HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHc--
Confidence            456778888888877   5578899999988765    3456788899999988644         368999999873  


Q ss_pred             hCCChHHHHHHHHHHHH-hcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHh
Q 001619          120 TFEDPNDVRRLFKRALS-FVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTL  172 (1043)
Q Consensus       120 ~~~~~e~ar~lferAL~-~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL  172 (1043)
                           +.++.+|..... .+|..  ...+|..|+.+.+..|+++.|.+||.++|
T Consensus        80 -----~~~~~if~~l~~~~IG~~--~A~fY~~wA~~le~~~~~~~A~~I~~~Gi  126 (126)
T PF08311_consen   80 -----SDPREIFKFLYSKGIGTK--LALFYEEWAEFLEKRGNFKKADEIYQLGI  126 (126)
T ss_dssp             -----SHHHHHHHHHHHHTTSTT--BHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             -----cCHHHHHHHHHHcCccHH--HHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence                 278999988776 45664  57999999999999999999999999885

This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.04  E-value=0.013  Score=64.18  Aligned_cols=44  Identities=16%  Similarity=0.089  Sum_probs=25.0

Q ss_pred             hHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHH
Q 001619          286 DIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRY  329 (1043)
Q Consensus       286 p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~y  329 (1043)
                      ..+.+...+...++...|+.+.......+||+.+|++...+-.|
T Consensus       220 ~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~Y  263 (504)
T KOG0624|consen  220 QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFY  263 (504)
T ss_pred             ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHH
Confidence            34455555555565556666666666666666666554444433

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.03  E-value=0.0022  Score=76.51  Aligned_cols=219  Identities=14%  Similarity=0.095  Sum_probs=150.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Q 001619           73 YGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYI  152 (1043)
Q Consensus        73 ~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi  152 (1043)
                      .-+=+.++++..+.|-...|..+|||-        .+|-.-+.++... |...+|..+..+-++.-|    .+.+|....
T Consensus       398 Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~l-g~~~kaeei~~q~lek~~----d~~lyc~LG  464 (777)
T KOG1128|consen  398 WQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLL-GQHGKAEEINRQELEKDP----DPRLYCLLG  464 (777)
T ss_pred             chHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHh-cccchHHHHHHHHhcCCC----cchhHHHhh
Confidence            334456777788888888888888874        4455455444444 666677766666555222    457777777


Q ss_pred             HHHHHhhhhhhHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHh
Q 001619          153 EFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKD  232 (1043)
Q Consensus       153 ~fe~~~~~~e~a~~iy~raL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~  232 (1043)
                      ++.....-++.|..+++..-.           +                  +.+.+.-.+                    
T Consensus       465 Dv~~d~s~yEkawElsn~~sa-----------r------------------A~r~~~~~~--------------------  495 (777)
T KOG1128|consen  465 DVLHDPSLYEKAWELSNYISA-----------R------------------AQRSLALLI--------------------  495 (777)
T ss_pred             hhccChHHHHHHHHHhhhhhH-----------H------------------HHHhhcccc--------------------
Confidence            776654434444433321100           0                  000000000                    


Q ss_pred             hcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHH
Q 001619          233 LLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLY  312 (1043)
Q Consensus       233 ~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~ly  312 (1043)
                                         .+...|.++      ...||..++        ++|-....|+.+.....+.++...+...|
T Consensus       496 -------------------~~~~~fs~~------~~hle~sl~--------~nplq~~~wf~~G~~ALqlek~q~av~aF  542 (777)
T KOG1128|consen  496 -------------------LSNKDFSEA------DKHLERSLE--------INPLQLGTWFGLGCAALQLEKEQAAVKAF  542 (777)
T ss_pred             -------------------ccchhHHHH------HHHHHHHhh--------cCccchhHHHhccHHHHHHhhhHHHHHHH
Confidence                               000112222      223444443        56888899999988777788999999999


Q ss_pred             HHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhC
Q 001619          313 ERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYID  387 (1043)
Q Consensus       313 erAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~  387 (1043)
                      .+||...|+..+-|.+++.-+.+.|+..+|+..+.+|++- +.....||..|.-.-...|+++.|.++|.+.+..
T Consensus       543 ~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n~~~w~iWENymlvsvdvge~eda~~A~~rll~~  616 (777)
T KOG1128|consen  543 HRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-NYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL  616 (777)
T ss_pred             HHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-CCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999975 4566789999999999999999999999999864

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.94  E-value=0.014  Score=70.13  Aligned_cols=21  Identities=43%  Similarity=0.321  Sum_probs=16.8

Q ss_pred             ccccccccccccccccccCCC
Q 001619          598 HDIRSDGAEVDILLSGEADSS  618 (1043)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~  618 (1043)
                      +-.-|++++||...++++|+-
T Consensus      1395 ~~~Msd~~e~d~~~~~~add~ 1415 (1416)
T KOG3617|consen 1395 EVEMSDGEEVDFSHSLRADDV 1415 (1416)
T ss_pred             eccccccccCccccccccccC
Confidence            334689999999999998764

>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1

Probab=97.93  E-value=6.5e-05  Score=72.20  Aligned_cols=106  Identities=21%  Similarity=0.311  Sum_probs=75.0

Q ss_pred             HHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHc---C-ChHHHHHHHHHHhcc---------CCCcHHHHHHHHHHH
Q 001619          267 INCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQ---G-DFDWVVKLYERCLIP---------CADYPEFWMRYVDFM  333 (1043)
Q Consensus       267 ~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~---g-~~e~~~~lyerAl~~---------~~~~~~LWl~yAk~~  333 (1043)
                      +..||..|.+.+..     ..-+..|..||.|.+.+   | .-.....++|||+..         .+.+..+|+.||++.
T Consensus         5 r~~~e~~i~~~~~~-----dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~   79 (125)
T smart00777        5 RQAFEQELQDLYEG-----DDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC   79 (125)
T ss_pred             HHHHHHHHHhcccC-----CCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc
Confidence            45677666433322     33478999999998742   2 345688999999974         467789999999874


Q ss_pred             HHcCChHHHHHHHHHHHHH-HhcccchHHHHHHHHHHHhCCHHHHHHHHHh
Q 001619          334 ESKGGREIASYALDRATQI-FLKRLPVIHLFNARYKEQIGDTSAARAAFPE  383 (1043)
Q Consensus       334 e~~g~~e~Ar~ilerA~~~-~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~r  383 (1043)
                         +   +++.+|.-.... ....++.+|.+||.+.+..|++.+|.+||..
T Consensus        80 ---~---dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~  124 (125)
T smart00777       80 ---D---EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL  124 (125)
T ss_pred             ---C---CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence               2   356666544331 0124677899999999999999999999875

Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=97.92  E-value=0.00081  Score=71.55  Aligned_cols=150  Identities=12%  Similarity=0.117  Sum_probs=112.5

Q ss_pred             HHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhC
Q 001619          308 VVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYID  387 (1043)
Q Consensus       308 ~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~  387 (1043)
                      +...+-+.+...|....+ ..+++-+.-.|+-+.+..+..++... .+....+...+++...+.|++..|...|.++.. 
T Consensus        52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~-  128 (257)
T COG5010          52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR-  128 (257)
T ss_pred             HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc-
Confidence            344444555566778888 88888888888888888887776644 445556777799999999999999999999985 


Q ss_pred             CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 001619          388 SDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVI  467 (1043)
Q Consensus       388 ~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~leraR~l~  467 (1043)
                      ..|+..+.|...+-...+.|+++.||..|.+++++      ++..|..+.+.+...   ++     .|+   .+.|+.++
T Consensus       129 l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L------~~~~p~~~nNlgms~---~L-----~gd---~~~A~~ll  191 (257)
T COG5010         129 LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALEL------APNEPSIANNLGMSL---LL-----RGD---LEDAETLL  191 (257)
T ss_pred             cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh------ccCCchhhhhHHHHH---HH-----cCC---HHHHHHHH
Confidence            56777889998888888999999999999999998      444455554432211   11     143   56799999


Q ss_pred             HHHhhcCCCc
Q 001619          468 SNALYSRPDV  477 (1043)
Q Consensus       468 erAl~~~p~~  477 (1043)
                      .++...-+.+
T Consensus       192 l~a~l~~~ad  201 (257)
T COG5010         192 LPAYLSPAAD  201 (257)
T ss_pred             HHHHhCCCCc
Confidence            9998765543

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.90  E-value=0.00012  Score=64.76  Aligned_cols=94  Identities=16%  Similarity=0.103  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHh
Q 001619          292 WHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQI  371 (1043)
Q Consensus       292 W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~  371 (1043)
                      |...+..+...|+++.+..+|++++...+....+|..++..+...|+++.|...|++++.. .+..+.+|...+.+....
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL-DPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcchhHHHHHHHHHHHH
Confidence            4445555555666667777777776666666666666666666666666777666666655 334445666666666666


Q ss_pred             CCHHHHHHHHHhhhh
Q 001619          372 GDTSAARAAFPESYI  386 (1043)
Q Consensus       372 g~~d~Ar~ll~ral~  386 (1043)
                      |+++.|+..+.+++.
T Consensus        82 ~~~~~a~~~~~~~~~   96 (100)
T cd00189          82 GKYEEALEAYEKALE   96 (100)
T ss_pred             HhHHHHHHHHHHHHc
Confidence            666666666666553

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.89  E-value=0.011  Score=66.40  Aligned_cols=133  Identities=17%  Similarity=0.128  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchH-HHHHH
Q 001619          287 IQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVI-HLFNA  365 (1043)
Q Consensus       287 ~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~i-wl~~A  365 (1043)
                      ++.++....+..++...++..++.+|-.+....|..+.+..+++.+|.+.||...|-..+=...+.|.-+.+.| |+.  
T Consensus       556 nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~--  633 (840)
T KOG2003|consen  556 NNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLA--  633 (840)
T ss_pred             hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHH--
Confidence            35666777777777788899999999999999999999999999999999998888776655554422222222 443  


Q ss_pred             HHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619          366 RYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET  422 (1043)
Q Consensus       366 ~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~  422 (1043)
                      .+.....-.++|...|++|.- .-|+..+--+.-+...++.|++.+|..+|+.....
T Consensus       634 ayyidtqf~ekai~y~ekaal-iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk  689 (840)
T KOG2003|consen  634 AYYIDTQFSEKAINYFEKAAL-IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK  689 (840)
T ss_pred             HHHHhhHHHHHHHHHHHHHHh-cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            455556667889999999863 34543333345567889999999999999988876

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.87  E-value=0.0004  Score=69.18  Aligned_cols=102  Identities=19%  Similarity=0.120  Sum_probs=93.8

Q ss_pred             hHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHH
Q 001619          286 DIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNA  365 (1043)
Q Consensus       286 p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A  365 (1043)
                      +...+.-..|+..+...|+++.|..+|+-.+...|.....|+.++-.+...|++++|...|.+|..+ .+++|...+..+
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-~~ddp~~~~~ag  110 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-KIDAPQAPWAAA  110 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCCchHHHHHH
Confidence            5666677788887888999999999999999999999999999999999999999999999999987 789999999999


Q ss_pred             HHHHHhCCHHHHHHHHHhhhhCC
Q 001619          366 RYKEQIGDTSAARAAFPESYIDS  388 (1043)
Q Consensus       366 ~~E~~~g~~d~Ar~ll~ral~~~  388 (1043)
                      ......|+++.|++.|+.++..+
T Consensus       111 ~c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        111 ECYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHh
Confidence            99999999999999999998643

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.83  E-value=0.00019  Score=63.42  Aligned_cols=84  Identities=13%  Similarity=0.158  Sum_probs=48.1

Q ss_pred             CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHH
Q 001619           53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFK  132 (1043)
Q Consensus        53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lfe  132 (1043)
                      ++.+.+..+|+++++..|.....|..++......+++++|..+|++++...|....+|..++.+.... ++.+.++..|+
T Consensus        14 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~   92 (100)
T cd00189          14 GDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL-GKYEEALEAYE   92 (100)
T ss_pred             hcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH-HhHHHHHHHHH
Confidence            45555555666666666655555555555555555556666666666665555555555555555554 45555555555


Q ss_pred             HHHHh
Q 001619          133 RALSF  137 (1043)
Q Consensus       133 rAL~~  137 (1043)
                      ++++.
T Consensus        93 ~~~~~   97 (100)
T cd00189          93 KALEL   97 (100)
T ss_pred             HHHcc
Confidence            55543

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.81  E-value=0.0003  Score=76.60  Aligned_cols=116  Identities=14%  Similarity=0.135  Sum_probs=65.2

Q ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCC--ChHHHHHHH
Q 001619           54 DIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFE--DPNDVRRLF  131 (1043)
Q Consensus        54 ~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~--~~e~ar~lf  131 (1043)
                      ..+.+....|.-|..+|.+.+-|..+......++++..|...|.+|++..|+++++|..|+..+....+  .-.+++.+|
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll  216 (287)
T COG4235         137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL  216 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            344455555666666666666666666666666666666666666666666666666666665554321  223466666


Q ss_pred             HHHHHhcCCCCCcHHHHHHHH-HHHHHhhhhhhHHHHHHHHhc
Q 001619          132 KRALSFVGKDYLCHTMWDKYI-EFEISQQRWSSLAQIFVQTLR  173 (1043)
Q Consensus       132 erAL~~lp~~~~s~~IW~~yi-~fe~~~~~~e~a~~iy~raL~  173 (1043)
                      ++||+.-|.+..  .+|.... .|+  .|++..+...++..|+
T Consensus       217 ~~al~~D~~~ir--al~lLA~~afe--~g~~~~A~~~Wq~lL~  255 (287)
T COG4235         217 RQALALDPANIR--ALSLLAFAAFE--QGDYAEAAAAWQMLLD  255 (287)
T ss_pred             HHHHhcCCccHH--HHHHHHHHHHH--cccHHHHHHHHHHHHh
Confidence            666665554431  2222222 232  3556666666666664

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.79  E-value=0.0008  Score=67.16  Aligned_cols=116  Identities=18%  Similarity=0.082  Sum_probs=95.4

Q ss_pred             cCChHHHHHHHHHHhccCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhccc---chHHHHHHHHHHHhCCHH
Q 001619          302 QGDFDWVVKLYERCLIPCADY---PEFWMRYVDFMESKGGREIASYALDRATQIFLKRL---PVIHLFNARYKEQIGDTS  375 (1043)
Q Consensus       302 ~g~~e~~~~lyerAl~~~~~~---~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~---p~iwl~~A~~E~~~g~~d  375 (1043)
                      .++...+...+++.+...+..   ...++..|+.+...|++++|...|++++... ++.   +..++..|.+....|+++
T Consensus        24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~d  102 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQYD  102 (145)
T ss_pred             CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCHH
Confidence            688889999999999887776   5668889999999999999999999998763 322   356778899999999999


Q ss_pred             HHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001619          376 AARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEAL  420 (1043)
Q Consensus       376 ~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekal  420 (1043)
                      .|..+|..... ... ...++...+++..+.|+++.|+..|++||
T Consensus       103 ~Al~~L~~~~~-~~~-~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  103 EALATLQQIPD-EAF-KALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHhccC-cch-HHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            99999976432 222 24467788999999999999999999985

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.79  E-value=0.00029  Score=81.34  Aligned_cols=90  Identities=17%  Similarity=0.097  Sum_probs=77.2

Q ss_pred             HHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHH
Q 001619          297 SFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSA  376 (1043)
Q Consensus       297 ~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~  376 (1043)
                      .-....|+++.++.+|++||...|....+|..++..+...|+++.|...|++|+.+ .+..+..|+..+..+...|+++.
T Consensus        10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l-~P~~~~a~~~lg~~~~~lg~~~e   88 (356)
T PLN03088         10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIEL-DPSLAKAYLRKGTACMKLEEYQT   88 (356)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHhCCHHH
Confidence            33345788999999999999988999999999999988999999999999999887 67777888888888888999999


Q ss_pred             HHHHHHhhhhC
Q 001619          377 ARAAFPESYID  387 (1043)
Q Consensus       377 Ar~ll~ral~~  387 (1043)
                      |+..|++++..
T Consensus        89 A~~~~~~al~l   99 (356)
T PLN03088         89 AKAALEKGASL   99 (356)
T ss_pred             HHHHHHHHHHh
Confidence            99999998863

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.79  E-value=0.065  Score=62.43  Aligned_cols=88  Identities=20%  Similarity=0.126  Sum_probs=67.5

Q ss_pred             HHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHH
Q 001619          333 MESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAA  412 (1043)
Q Consensus       333 ~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~A  412 (1043)
                      +-+.||+..|..-|.+|++. .|+.+.+++..|-...+.|++..|.+-.+.+++ ..|...+.|++-+...+-+.++++|
T Consensus       368 ~Fk~gdy~~Av~~YteAIkr-~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie-L~p~~~kgy~RKg~al~~mk~ydkA  445 (539)
T KOG0548|consen  368 AFKKGDYPEAVKHYTEAIKR-DPEDARLYSNRAACYLKLGEYPEALKDAKKCIE-LDPNFIKAYLRKGAALRAMKEYDKA  445 (539)
T ss_pred             HHhccCHHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHHHH
Confidence            34557788888888888876 677777888888888888888888887777774 4666777777777777777788888


Q ss_pred             HHHHHHHHHH
Q 001619          413 CDTYKEALET  422 (1043)
Q Consensus       413 r~lyekale~  422 (1043)
                      .+.|.++++.
T Consensus       446 leay~eale~  455 (539)
T KOG0548|consen  446 LEAYQEALEL  455 (539)
T ss_pred             HHHHHHHHhc
Confidence            8888888886

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.74  E-value=0.00062  Score=78.57  Aligned_cols=99  Identities=14%  Similarity=0.139  Sum_probs=88.7

Q ss_pred             CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHH
Q 001619           53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFK  132 (1043)
Q Consensus        53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lfe  132 (1043)
                      +++..+...|+++|+..|.+..+|..++......|++++|...|++|+...|.+...|..++..+... ++++.|...|+
T Consensus        16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l-g~~~eA~~~~~   94 (356)
T PLN03088         16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL-EEYQTAKAALE   94 (356)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh-CCHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999888877 99999999999


Q ss_pred             HHHHhcCCCCCcHHHHHHHHH
Q 001619          133 RALSFVGKDYLCHTMWDKYIE  153 (1043)
Q Consensus       133 rAL~~lp~~~~s~~IW~~yi~  153 (1043)
                      +|+..-|.+. ....|...++
T Consensus        95 ~al~l~P~~~-~~~~~l~~~~  114 (356)
T PLN03088         95 KGASLAPGDS-RFTKLIKECD  114 (356)
T ss_pred             HHHHhCCCCH-HHHHHHHHHH
Confidence            9999887654 3455655553

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.71  E-value=0.0011  Score=66.05  Aligned_cols=104  Identities=7%  Similarity=0.115  Sum_probs=90.1

Q ss_pred             CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 001619           34 SLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHY  113 (1043)
Q Consensus        34 P~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y  113 (1043)
                      +.+.+.-..+.-.+-..  |+++.+.++|+-++...|.+...|+.+.-.....|++++|..+|.+|+...|++++.-...
T Consensus        32 ~~~l~~lY~~A~~ly~~--G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~a  109 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEV--KEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAA  109 (157)
T ss_pred             HHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence            45555656665544444  8999999999999999999999999999999999999999999999999999999988877


Q ss_pred             HHHHHhhCCChHHHHHHHHHHHHhcCC
Q 001619          114 CSLSMSTFEDPNDVRRLFKRALSFVGK  140 (1043)
Q Consensus       114 ~~~~~~~~~~~e~ar~lferAL~~lp~  140 (1043)
                      +...+.. ++++.|++.|+.|+..++.
T Consensus       110 g~c~L~l-G~~~~A~~aF~~Ai~~~~~  135 (157)
T PRK15363        110 AECYLAC-DNVCYAIKALKAVVRICGE  135 (157)
T ss_pred             HHHHHHc-CCHHHHHHHHHHHHHHhcc
Confidence            7777777 9999999999999998864

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.69  E-value=0.0039  Score=71.63  Aligned_cols=135  Identities=17%  Similarity=0.071  Sum_probs=117.6

Q ss_pred             hHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHH
Q 001619          286 DIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNA  365 (1043)
Q Consensus       286 p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A  365 (1043)
                      |.....|...+.-....|.+++++.++...+...|+.+-+|......+...|+..+|.+.|++++.. .|+.+.+|+.|+
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l-~P~~~~l~~~~a  381 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL-DPNSPLLQLNLA  381 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCccHHHHHHH
Confidence            3455667666555556889999999999999899999999999999999999999999999999987 667789999999


Q ss_pred             HHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619          366 RYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET  422 (1043)
Q Consensus       366 ~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~  422 (1043)
                      ..+...|++.+|..++.+.+.. .|.....|...+.-....|+..++...+.++...
T Consensus       382 ~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~  437 (484)
T COG4783         382 QALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEGYAL  437 (484)
T ss_pred             HHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence            9999999999999999999864 5666788999999999999999999988887775

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.64  E-value=0.035  Score=61.00  Aligned_cols=298  Identities=9%  Similarity=0.010  Sum_probs=163.8

Q ss_pred             ccHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001619           21 FGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAV  100 (1043)
Q Consensus        21 ~~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL  100 (1043)
                      +....|-.+|..+|.++.+..+-+..+-..  |.-..+..-+.|.|+.-|+-...-+.-.....+.|.++.|..=|...|
T Consensus        56 DALt~yHaAve~dp~~Y~aifrRaT~yLAm--Gksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl  133 (504)
T KOG0624|consen   56 DALTHYHAAVEGDPNNYQAIFRRATVYLAM--GKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVL  133 (504)
T ss_pred             HHHHHHHHHHcCCchhHHHHHHHHHHHhhh--cCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHH
Confidence            455678889999999998888755444333  444455566788888888888888888888888888888888888888


Q ss_pred             HhcCCCHHHHHHHHHHH------------Hh--hCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHH
Q 001619          101 QSATYSVDVWFHYCSLS------------MS--TFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQ  166 (1043)
Q Consensus       101 ~~~P~s~~LWl~Y~~~~------------~~--~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~  166 (1043)
                      ...|..-..-..+-++.            ..  ..|+...|.......|+..|.+   ..+...-++-....|....|+.
T Consensus       134 ~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wd---a~l~~~Rakc~i~~~e~k~AI~  210 (504)
T KOG0624|consen  134 QHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWD---ASLRQARAKCYIAEGEPKKAIH  210 (504)
T ss_pred             hcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcch---hHHHHHHHHHHHhcCcHHHHHH
Confidence            88774332222221111            11  1267788888888888887773   4566666666666677777776


Q ss_pred             HHHHHhcCCCccHHHHHH--HHHHHHHHHHHhhhhhhhhhHHHHHHhhhccc-cccCccchhhhHHHHhhcCCchhhHHH
Q 001619          167 IFVQTLRFPSKKLHHYYD--SFKKLAGAWKEELECESDSAMEFQSELVLEGE-VPAYYKDDETSSVIKDLLDPSVDLVRS  243 (1043)
Q Consensus       167 iy~raL~~p~~~l~~~~~--~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~-l~~~~~~~e~~~~i~~~~~~~~~~e~a  243 (1043)
                      -++.+-++...+.+..|.  .+..-++.....+.        .+.+++.-.. -+.++..+.   .++...   +.++.+
T Consensus       211 Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~--------~iRECLKldpdHK~Cf~~YK---klkKv~---K~les~  276 (504)
T KOG0624|consen  211 DLKQASKLSQDNTEGHYKISQLLYTVGDAENSLK--------EIRECLKLDPDHKLCFPFYK---KLKKVV---KSLESA  276 (504)
T ss_pred             HHHHHHhccccchHHHHHHHHHHHhhhhHHHHHH--------HHHHHHccCcchhhHHHHHH---HHHHHH---HHHHHH
Confidence            666665554444444432  12222232222222        2222221000 000111000   000000   000000


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcH
Q 001619          244 KAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYP  323 (1043)
Q Consensus       244 r~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~  323 (1043)
                      ..     .+....|.      ..+...|+.++...    ...+-.+........-....+.+-+++..-.++|...|+..
T Consensus       277 e~-----~ie~~~~t------~cle~ge~vlk~ep----~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv  341 (504)
T KOG0624|consen  277 EQ-----AIEEKHWT------ECLEAGEKVLKNEP----EETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDV  341 (504)
T ss_pred             HH-----HHhhhhHH------HHHHHHHHHHhcCC----cccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHH
Confidence            00     01111121      22333344433110    00111122222222222334567788888888888888888


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001619          324 EFWMRYVDFMESKGGREIASYALDRATQI  352 (1043)
Q Consensus       324 ~LWl~yAk~~e~~g~~e~Ar~ilerA~~~  352 (1043)
                      .+.+..|.-+.....++.|..-|++|.+.
T Consensus       342 ~~l~dRAeA~l~dE~YD~AI~dye~A~e~  370 (504)
T KOG0624|consen  342 QVLCDRAEAYLGDEMYDDAIHDYEKALEL  370 (504)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence            88888888777666788888888888776

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.64  E-value=0.26  Score=58.17  Aligned_cols=118  Identities=16%  Similarity=0.058  Sum_probs=88.0

Q ss_pred             hHHHHHHHHHHhccCCCc-HHHHHHHHHHHHHcCChHHHHHHHHHHHHH------HhcccchHHHHHHHHHHHhCCHHHH
Q 001619          305 FDWVVKLYERCLIPCADY-PEFWMRYVDFMESKGGREIASYALDRATQI------FLKRLPVIHLFNARYKEQIGDTSAA  377 (1043)
Q Consensus       305 ~e~~~~lyerAl~~~~~~-~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~------~~~~~p~iwl~~A~~E~~~g~~d~A  377 (1043)
                      ...+..++..+....|.. ..+-+..|......|+.+.|..+|..-...      -....|.+-.+-..+.++.++.+.|
T Consensus       357 ~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a  436 (652)
T KOG2376|consen  357 HKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSA  436 (652)
T ss_pred             HhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccH
Confidence            445666666666655544 667778888888999999999999833211      1235677777777788888888888


Q ss_pred             HHHHHhhhhC-----C-ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619          378 RAAFPESYID-----S-DSRFIEKVTFKANMERRLGNFVAACDTYKEALET  422 (1043)
Q Consensus       378 r~ll~ral~~-----~-~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~  422 (1043)
                      -.++..|+.-     . .....-+|...+.|+.+.|+.++|..+|++.++.
T Consensus       437 ~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~  487 (652)
T KOG2376|consen  437 SAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF  487 (652)
T ss_pred             HHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh
Confidence            8888888751     1 1233347888999999999999999999999996

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.55  E-value=0.0036  Score=62.49  Aligned_cols=126  Identities=8%  Similarity=0.094  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHH
Q 001619           39 EWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLC---YGYWRKYADHKARLCSIDKVVEVFERAVQSATYS---VDVWFH  112 (1043)
Q Consensus        39 ~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s---~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s---~~LWl~  112 (1043)
                      .+..++..+..   ++...+...++.+++.+|.+   ...++..++.....|++++|...|++++...+..   ...++.
T Consensus        14 ~y~~~~~~~~~---~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~   90 (145)
T PF09976_consen   14 LYEQALQALQA---GDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR   90 (145)
T ss_pred             HHHHHHHHHHC---CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence            34444554433   78888999999999999999   4556666777788899999999999999986443   235666


Q ss_pred             HHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHh
Q 001619          113 YCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTL  172 (1043)
Q Consensus       113 Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL  172 (1043)
                      ++++++.. ++++.|..+++.. .  +..+ ...+|....+.....|+++.|+..|+++|
T Consensus        91 LA~~~~~~-~~~d~Al~~L~~~-~--~~~~-~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   91 LARILLQQ-GQYDEALATLQQI-P--DEAF-KALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHc-CCHHHHHHHHHhc-c--Ccch-HHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            67777777 8999999999652 1  2222 56788888888889999999999999875

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.54  E-value=0.003  Score=72.52  Aligned_cols=117  Identities=12%  Similarity=0.072  Sum_probs=98.0

Q ss_pred             CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHH
Q 001619           53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFK  132 (1043)
Q Consensus        53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lfe  132 (1043)
                      +.++.++..+...++..|+++-+|....++..+.+...+|.+.|+|||...|.+.-+|+.|+..+++. +++.++.++++
T Consensus       320 ~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~-g~~~eai~~L~  398 (484)
T COG4783         320 GQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKG-GKPQEAIRILN  398 (484)
T ss_pred             cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhc-CChHHHHHHHH
Confidence            57788888888889999999999998888888888899999999999999999999999999998888 88889999999


Q ss_pred             HHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhc
Q 001619          133 RALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLR  173 (1043)
Q Consensus       133 rAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~  173 (1043)
                      +.+...|.+   ...|...++-....|+..++..-+..++.
T Consensus       399 ~~~~~~p~d---p~~w~~LAqay~~~g~~~~a~~A~AE~~~  436 (484)
T COG4783         399 RYLFNDPED---PNGWDLLAQAYAELGNRAEALLARAEGYA  436 (484)
T ss_pred             HHhhcCCCC---chHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            998888874   46888888888777777766666555544

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.53  E-value=0.015  Score=64.98  Aligned_cols=185  Identities=15%  Similarity=0.096  Sum_probs=104.1

Q ss_pred             ChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhccc-----chHHHHHHHHHHHhCCHHHHH
Q 001619          304 DFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRL-----PVIHLFNARYKEQIGDTSAAR  378 (1043)
Q Consensus       304 ~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~-----p~iwl~~A~~E~~~g~~d~Ar  378 (1043)
                      +++.+..+|++|-.              .+...|+.++|...|.+|...+.+..     ...+...+.+..+ ++++.|.
T Consensus        30 ~~e~Aa~~y~~Aa~--------------~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai   94 (282)
T PF14938_consen   30 DYEEAADLYEKAAN--------------CFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAI   94 (282)
T ss_dssp             HHHHHHHHHHHHHH--------------HHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHH
T ss_pred             CHHHHHHHHHHHHH--------------HHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHH
Confidence            45566666666532              23334444444444444444332210     1223333333322 3777777


Q ss_pred             HHHHhhhhCC-----ChhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHH
Q 001619          379 AAFPESYIDS-----DSRFIEKVTFKANMERRL-GNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTM  452 (1043)
Q Consensus       379 ~ll~ral~~~-----~~~~~~lw~~~a~lE~~~-G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~  452 (1043)
                      ..|.+|+...     .....++....+.+.+.. |+++.|.+.|++|++...... .   +    ..+...+...+.+..
T Consensus        95 ~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~---~----~~a~~~~~~~A~l~~  166 (282)
T PF14938_consen   95 ECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-S---P----HSAAECLLKAADLYA  166 (282)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-----H----HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-C---h----hhHHHHHHHHHHHHH
Confidence            7777776421     123356777778888877 999999999999999865432 1   1    113333445555555


Q ss_pred             HhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhCCC
Q 001619          453 VHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLD---LCGTIHDIRNAWNQHIKLFPH  519 (1043)
Q Consensus       453 ~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee---~~G~~~~a~~~~~ra~k~~p~  519 (1043)
                      ..|.   .+.|-.+|++....+.+.  .+..-   .+...|+...-   ..|+.-.|.+.+.+....+|.
T Consensus       167 ~l~~---y~~A~~~~e~~~~~~l~~--~l~~~---~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~  228 (282)
T PF14938_consen  167 RLGR---YEEAIEIYEEVAKKCLEN--NLLKY---SAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS  228 (282)
T ss_dssp             HTT----HHHHHHHHHHHHHTCCCH--CTTGH---HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred             HhCC---HHHHHHHHHHHHHHhhcc--cccch---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            5553   678999999988766554  12111   12334443332   349999999999999988874

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=97.50  E-value=0.0025  Score=67.95  Aligned_cols=135  Identities=16%  Similarity=0.034  Sum_probs=108.9

Q ss_pred             ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHH
Q 001619          285 DDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFN  364 (1043)
Q Consensus       285 ~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~  364 (1043)
                      +|.+..+-..++......|++..+..+|.||+...|+..++|...+-.|.+.|+++.||.-|.+|+++ .+..|.+.-..
T Consensus        96 ~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L-~~~~p~~~nNl  174 (257)
T COG5010          96 YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALEL-APNEPSIANNL  174 (257)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh-ccCCchhhhhH
Confidence            35555566668888888999999999999999999999999999999999999999999999999988 55677676666


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001619          365 ARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALE  421 (1043)
Q Consensus       365 A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale  421 (1043)
                      +-...-.|+++.|+.++.++..... ....+--..+-+....|++..|+++-..-+.
T Consensus       175 gms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~~  230 (257)
T COG5010         175 GMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIAVQELL  230 (257)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhcccccc
Confidence            6777789999999999999986433 2234445555555667999999988655443

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=97.48  E-value=0.00018  Score=51.66  Aligned_cols=31  Identities=26%  Similarity=0.678  Sum_probs=23.1

Q ss_pred             CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 001619           88 SIDKVVEVFERAVQSATYSVDVWFHYCSLSM  118 (1043)
Q Consensus        88 ~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~  118 (1043)
                      ++++|+.+|+|++..+|.++++|+.|++|+.
T Consensus         2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~   32 (33)
T smart00386        2 DIERARKIYERALEKFPKSVELWLKYAEFEE   32 (33)
T ss_pred             cHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence            5667777777777777777777777777754

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.47  E-value=0.0025  Score=60.34  Aligned_cols=100  Identities=9%  Similarity=0.058  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHH
Q 001619           38 DEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLC---YGYWRKYADHKARLCSIDKVVEVFERAVQSATYS---VDVWF  111 (1043)
Q Consensus        38 ~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s---~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s---~~LWl  111 (1043)
                      +.+...+..+...  ++.+++...|++++..+|.+   ...+..++......++++.|..+|++++...|.+   ..+|.
T Consensus         3 ~~~~~~~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~   80 (119)
T TIGR02795         3 EAYYDAALLVLKA--GDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL   80 (119)
T ss_pred             HHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence            4455555555544  78888888888888888776   4567777777778888888888888888877764   56777


Q ss_pred             HHHHHHHhhCCChHHHHHHHHHHHHhcCC
Q 001619          112 HYCSLSMSTFEDPNDVRRLFKRALSFVGK  140 (1043)
Q Consensus       112 ~Y~~~~~~~~~~~e~ar~lferAL~~lp~  140 (1043)
                      ..+..+... ++.+.+...|++++..-|.
T Consensus        81 ~~~~~~~~~-~~~~~A~~~~~~~~~~~p~  108 (119)
T TIGR02795        81 KLGMSLQEL-GDKEKAKATLQQVIKRYPG  108 (119)
T ss_pred             HHHHHHHHh-CChHHHHHHHHHHHHHCcC
Confidence            777777666 7888888888888887665

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.45  E-value=0.0026  Score=60.25  Aligned_cols=97  Identities=16%  Similarity=0.175  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhccCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc--ccchHHHHHH
Q 001619          291 NWHDYLSFAEKQGDFDWVVKLYERCLIPCADY---PEFWMRYVDFMESKGGREIASYALDRATQIFLK--RLPVIHLFNA  365 (1043)
Q Consensus       291 ~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~---~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~--~~p~iwl~~A  365 (1043)
                      .+...+......|+++.+...|++++...|..   ...++.++..+...|+++.|...|++++..+..  ..+.+|...+
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            45555666666777777777777777655443   456777777777777777777777777765322  1245677777


Q ss_pred             HHHHHhCCHHHHHHHHHhhhhC
Q 001619          366 RYKEQIGDTSAARAAFPESYID  387 (1043)
Q Consensus       366 ~~E~~~g~~d~Ar~ll~ral~~  387 (1043)
                      .+....|++++|...|.+++..
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHH
Confidence            7777777777777777777753

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.44  E-value=0.0095  Score=66.52  Aligned_cols=172  Identities=15%  Similarity=0.168  Sum_probs=103.8

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHhccC---C---CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcc-----cchHHH
Q 001619          294 DYLSFAEKQGDFDWVVKLYERCLIPC---A---DYPEFWMRYVDFMESKGGREIASYALDRATQIFLKR-----LPVIHL  362 (1043)
Q Consensus       294 ~yi~~e~~~g~~e~~~~lyerAl~~~---~---~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~-----~p~iwl  362 (1043)
                      +.+..++..++++.+...|++|....   .   .....|...+..+.+ ++.+.|...|++|+.+|...     ...+..
T Consensus        40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~  118 (282)
T PF14938_consen   40 KAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAGRFSQAAKCLK  118 (282)
T ss_dssp             HHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT-HHHHHHHHH
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            33444444555555555555555321   1   112334455555544 48999999999999987642     235677


Q ss_pred             HHHHHHHHh-CCHHHHHHHHHhhhhCC----C-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHH
Q 001619          363 FNARYKEQI-GDTSAARAAFPESYIDS----D-SRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLY  436 (1043)
Q Consensus       363 ~~A~~E~~~-g~~d~Ar~ll~ral~~~----~-~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~  436 (1043)
                      ..|++.+.. |+++.|...|.+|+...    . .....++.+.+.|..++|+++.|.++|++.+......      ..  
T Consensus       119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~------~l--  190 (282)
T PF14938_consen  119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLEN------NL--  190 (282)
T ss_dssp             HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCH------CT--
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcc------cc--
Confidence            788888888 99999999999998621    1 2234578899999999999999999999988852111      10  


Q ss_pred             HHH-HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCc
Q 001619          437 VQF-SRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDV  477 (1043)
Q Consensus       437 ~~~-ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~  477 (1043)
                      +.| ++..|...+-.-...|+   ...|+..|++....+|..
T Consensus       191 ~~~~~~~~~l~a~l~~L~~~D---~v~A~~~~~~~~~~~~~F  229 (282)
T PF14938_consen  191 LKYSAKEYFLKAILCHLAMGD---YVAARKALERYCSQDPSF  229 (282)
T ss_dssp             TGHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHGTTSTTS
T ss_pred             cchhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCC
Confidence            011 11111111111111244   457999999998877754

>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1

Probab=97.41  E-value=0.0018  Score=62.34  Aligned_cols=107  Identities=21%  Similarity=0.249  Sum_probs=79.3

Q ss_pred             HHHHHHHHHhc---cCCCcHHHHHHHHHHHHHc---C-ChHHHHHHHHHHHHHHhc-----ccc---hHHHHHHHHHHHh
Q 001619          307 WVVKLYERCLI---PCADYPEFWMRYVDFMESK---G-GREIASYALDRATQIFLK-----RLP---VIHLFNARYKEQI  371 (1043)
Q Consensus       307 ~~~~lyerAl~---~~~~~~~LWl~yAk~~e~~---g-~~e~Ar~ilerA~~~~~~-----~~p---~iwl~~A~~E~~~  371 (1043)
                      ..+..||+.|.   .-.+.-.+|++|++|.+.+   | .-..-..+|+||++.|..     +.+   .+|+.||++.   
T Consensus         3 ~~r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~---   79 (125)
T smart00777        3 QQRQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC---   79 (125)
T ss_pred             HHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc---
Confidence            45677888872   2456679999999998863   2 345667899999998643     233   7899998774   


Q ss_pred             CCHHHHHHHHHhhhhCCC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001619          372 GDTSAARAAFPESYIDSD-SRFIEKVTFKANMERRLGNFVAACDTYKEA  419 (1043)
Q Consensus       372 g~~d~Ar~ll~ral~~~~-~~~~~lw~~~a~lE~~~G~~e~Ar~lyeka  419 (1043)
                         +.++++|.-+..... .....+|..||.+.+..|++..|.+||+.+
T Consensus        80 ---~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~G  125 (125)
T smart00777       80 ---DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQLG  125 (125)
T ss_pred             ---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHcc
Confidence               446777776654333 345668999999999999999999999753

Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.40  E-value=0.00054  Score=58.51  Aligned_cols=63  Identities=13%  Similarity=0.005  Sum_probs=47.8

Q ss_pred             CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 001619           53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCS  115 (1043)
Q Consensus        53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~  115 (1043)
                      ++.+.+..+|++++..+|.+.++|..++....+.|++++|+.+|++++...|.+..+|..+++
T Consensus         5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            677777778888888888888888888888877888888888888888887777777766543

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.39  E-value=0.00035  Score=59.67  Aligned_cols=63  Identities=25%  Similarity=0.285  Sum_probs=34.8

Q ss_pred             cCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHH
Q 001619          302 QGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNA  365 (1043)
Q Consensus       302 ~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A  365 (1043)
                      .|+++.|..+|++++...|+...+|+.++..+...|++++|+.+|++++.. .++.+.+|..++
T Consensus         4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~l~a   66 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ-DPDNPEYQQLLA   66 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG-GTTHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcCHHHHHHHHh
Confidence            455556666666666655666666666666666666666666666555544 333344444444

...

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.39  E-value=0.0033  Score=68.63  Aligned_cols=125  Identities=11%  Similarity=0.014  Sum_probs=106.6

Q ss_pred             CCCCCCccHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHH
Q 001619           15 PNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLC---SIDK   91 (1043)
Q Consensus        15 ~~~~~~~~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~---~~e~   91 (1043)
                      .+..++.-+..|+..|..||.|.+.|.-+...+-..  ++...+-..|+++++..|.+..+|..|++...-..   ...+
T Consensus       134 ~~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~--~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~  211 (287)
T COG4235         134 AEQEMEALIARLETHLQQNPGDAEGWDLLGRAYMAL--GRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAK  211 (287)
T ss_pred             CcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--cchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHH
Confidence            445566678899999999999999999999887776  89999999999999999999999999999765442   4578


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCC
Q 001619           92 VVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDY  142 (1043)
Q Consensus        92 a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~  142 (1043)
                      ++.+|.+||..+|.+++--.-++--.... +++..|...++.-|+.+|.+-
T Consensus       212 a~~ll~~al~~D~~~iral~lLA~~afe~-g~~~~A~~~Wq~lL~~lp~~~  261 (287)
T COG4235         212 ARALLRQALALDPANIRALSLLAFAAFEQ-GDYAEAAAAWQMLLDLLPADD  261 (287)
T ss_pred             HHHHHHHHHhcCCccHHHHHHHHHHHHHc-ccHHHHHHHHHHHHhcCCCCC
Confidence            99999999999999998655555444555 899999999999999998753

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.38  E-value=0.0046  Score=74.57  Aligned_cols=141  Identities=16%  Similarity=0.013  Sum_probs=102.1

Q ss_pred             hHHHHHHHHHHHHH--HHcC---ChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHc---C-----ChHHHHHHHHHHHHH
Q 001619          286 DIQLKNWHDYLSFA--EKQG---DFDWVVKLYERCLIPCADYPEFWMRYVDFMESK---G-----GREIASYALDRATQI  352 (1043)
Q Consensus       286 p~~~~~W~~yi~~e--~~~g---~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~---g-----~~e~Ar~ilerA~~~  352 (1043)
                      |.+...|-.|+.-.  ...+   +.+.++.+|++|+...|++...|...+..+...   +     ++..+....++++..
T Consensus       334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al  413 (517)
T PRK10153        334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL  413 (517)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence            45555665554432  1223   367999999999999999988887755533221   1     234455555555443


Q ss_pred             -HhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCc
Q 001619          353 -FLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHT  431 (1043)
Q Consensus       353 -~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~  431 (1043)
                       ..+..+.+|...+-.....|++++|...|++|+.. .+ +...|...+.+....|+.++|.+.|++|+.+      .|.
T Consensus       414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L-~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L------~P~  485 (517)
T PRK10153        414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL-EM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNL------RPG  485 (517)
T ss_pred             ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCC
Confidence             13345688888888888899999999999999964 44 4668888899999999999999999999998      565


Q ss_pred             cHH
Q 001619          432 LPL  434 (1043)
Q Consensus       432 ~~~  434 (1043)
                      .|.
T Consensus       486 ~pt  488 (517)
T PRK10153        486 ENT  488 (517)
T ss_pred             Cch
Confidence            553

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.30  E-value=0.00089  Score=60.02  Aligned_cols=80  Identities=15%  Similarity=0.036  Sum_probs=32.9

Q ss_pred             CChHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Q 001619          337 GGREIASYALDRATQIFLKR-LPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDT  415 (1043)
Q Consensus       337 g~~e~Ar~ilerA~~~~~~~-~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~l  415 (1043)
                      |+++.|..+|++++.....+ ...+|+..|....+.|++++|..++++ .. ..+........++..-..+|.+++|+++
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~-~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK-LDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT-HHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC-CCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            34444455555444442111 223444444444555555555555544 21 1222233333334444444555555555


Q ss_pred             HHH
Q 001619          416 YKE  418 (1043)
Q Consensus       416 yek  418 (1043)
                      |++
T Consensus        81 l~~   83 (84)
T PF12895_consen   81 LEK   83 (84)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            444

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.29  E-value=0.00095  Score=56.52  Aligned_cols=54  Identities=15%  Similarity=0.146  Sum_probs=28.9

Q ss_pred             CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 001619           53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYS  106 (1043)
Q Consensus        53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s  106 (1043)
                      ++++++..+|+++++.+|.+...|..++......|++++|..+|++++...|.+
T Consensus        11 g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen   11 GDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             THHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            455555555555555555555555555555555555555555555555555543

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.28  E-value=0.0012  Score=55.91  Aligned_cols=57  Identities=25%  Similarity=0.355  Sum_probs=42.8

Q ss_pred             HHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001619          296 LSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQI  352 (1043)
Q Consensus       296 i~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~  352 (1043)
                      +..+...|+++.++.+|++++...|+...+|..++..+...|++++|+..|++++..
T Consensus         4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            444455777888888888888877888888888888877888888888888877765

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.26  E-value=0.0035  Score=64.43  Aligned_cols=85  Identities=8%  Similarity=-0.120  Sum_probs=67.0

Q ss_pred             CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 001619           34 SLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLC---YGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVW  110 (1043)
Q Consensus        34 P~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s---~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LW  110 (1043)
                      +.....+..+...+...  ++.+++...|+++++..|..   ...|..++......|++++|...|++|+...|.....|
T Consensus        32 ~~~a~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  109 (172)
T PRK02603         32 AKEAFVYYRDGMSAQAD--GEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL  109 (172)
T ss_pred             hhhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence            34444555556655555  88999999999999887764   35788888888888999999999999999999999888


Q ss_pred             HHHHHHHHhh
Q 001619          111 FHYCSLSMST  120 (1043)
Q Consensus       111 l~Y~~~~~~~  120 (1043)
                      ..++..+...
T Consensus       110 ~~lg~~~~~~  119 (172)
T PRK02603        110 NNIAVIYHKR  119 (172)
T ss_pred             HHHHHHHHHc
Confidence            8887776655

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.25  E-value=0.0049  Score=63.36  Aligned_cols=88  Identities=15%  Similarity=0.050  Sum_probs=71.1

Q ss_pred             hHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCC---cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHH
Q 001619          286 DIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCAD---YPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHL  362 (1043)
Q Consensus       286 p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~---~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl  362 (1043)
                      +.....+...+..+...|+++.+...|++|+...++   ...+|..++..+...|+++.|+..|.+|+.. .+.....|.
T Consensus        32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~  110 (172)
T PRK02603         32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL-NPKQPSALN  110 (172)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcccHHHHH
Confidence            455667777888888899999999999999976444   3578999999999999999999999999987 555666777


Q ss_pred             HHHHHHHHhCCH
Q 001619          363 FNARYKEQIGDT  374 (1043)
Q Consensus       363 ~~A~~E~~~g~~  374 (1043)
                      ..+.+....|+.
T Consensus       111 ~lg~~~~~~g~~  122 (172)
T PRK02603        111 NIAVIYHKRGEK  122 (172)
T ss_pred             HHHHHHHHcCCh
Confidence            777777666653

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.25  E-value=0.0058  Score=66.43  Aligned_cols=93  Identities=14%  Similarity=0.015  Sum_probs=76.9

Q ss_pred             HHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHH
Q 001619          299 AEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAAR  378 (1043)
Q Consensus       299 e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar  378 (1043)
                      +.+.+++.+|+..|++||...|....++.+.|..|.+.|.++.|.+-.++|+.+ .+...+.|..........|++++|.
T Consensus        91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i-Dp~yskay~RLG~A~~~~gk~~~A~  169 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI-DPHYSKAYGRLGLAYLALGKYEEAI  169 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHccCcHHHHH
Confidence            335678999999999999999999999999999999999999999999999987 4444455555555667899999999


Q ss_pred             HHHHhhhhCCChhhH
Q 001619          379 AAFPESYIDSDSRFI  393 (1043)
Q Consensus       379 ~ll~ral~~~~~~~~  393 (1043)
                      ..|++|+. ..|...
T Consensus       170 ~aykKaLe-ldP~Ne  183 (304)
T KOG0553|consen  170 EAYKKALE-LDPDNE  183 (304)
T ss_pred             HHHHhhhc-cCCCcH
Confidence            99999995 456543

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.21  E-value=0.0015  Score=55.96  Aligned_cols=64  Identities=16%  Similarity=0.288  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHHh
Q 001619           73 YGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFE-DPNDVRRLFKRALSF  137 (1043)
Q Consensus        73 ~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~-~~e~ar~lferAL~~  137 (1043)
                      ...|...+......+++++|...|++|+..+|.++.+|...+...... + +.++|.+.|++|+..
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~-~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKL-GKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHT-TTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHc
Confidence            345666666666666666666666666666666666666666665555 4 466666666666654

...

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.17  E-value=0.0064  Score=70.40  Aligned_cols=119  Identities=13%  Similarity=-0.004  Sum_probs=101.9

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCC
Q 001619          294 DYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGD  373 (1043)
Q Consensus       294 ~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~  373 (1043)
                      .++.++...+.++.++.+|++.....|   ++++.+|+.+...++..+|..++.+++.. .|....++...|+|+...++
T Consensus       174 ~Ll~~l~~t~~~~~ai~lle~L~~~~p---ev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~  249 (395)
T PF09295_consen  174 TLLKYLSLTQRYDEAIELLEKLRERDP---EVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKK  249 (395)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHhcCC---cHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Confidence            345566667889999999999988765   56777888888888899999999999976 66667899999999999999


Q ss_pred             HHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001619          374 TSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYK  417 (1043)
Q Consensus       374 ~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lye  417 (1043)
                      ++.|..+.++|+. ..|...+.|...+.....+|+++.|...+.
T Consensus       250 ~~lAL~iAk~av~-lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN  292 (395)
T PF09295_consen  250 YELALEIAKKAVE-LSPSEFETWYQLAECYIQLGDFENALLALN  292 (395)
T ss_pred             HHHHHHHHHHHHH-hCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence            9999999999996 466667899999999999999999997664

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.16  E-value=0.0023  Score=57.33  Aligned_cols=81  Identities=22%  Similarity=0.278  Sum_probs=67.5

Q ss_pred             cCChHHHHHHHHHHhccCCC--cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHH
Q 001619          302 QGDFDWVVKLYERCLIPCAD--YPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARA  379 (1043)
Q Consensus       302 ~g~~e~~~~lyerAl~~~~~--~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~  379 (1043)
                      .|+++.|+.+|++++...+.  ...+|+.+|..+-+.|++++|..++++ ... .+....++..+|+.....|++++|++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~-~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL-DPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH-HHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC-CCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            57899999999999987663  567899999999999999999999998 444 44555677777999999999999999


Q ss_pred             HHHhh
Q 001619          380 AFPES  384 (1043)
Q Consensus       380 ll~ra  384 (1043)
                      +|+++
T Consensus        80 ~l~~~   84 (84)
T PF12895_consen   80 ALEKA   84 (84)
T ss_dssp             HHHHH
T ss_pred             HHhcC
Confidence            99875

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.15  E-value=0.0024  Score=54.61  Aligned_cols=67  Identities=15%  Similarity=0.148  Sum_probs=61.4

Q ss_pred             CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcC
Q 001619           36 DFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLC-SIDKVVEVFERAVQSAT  104 (1043)
Q Consensus        36 d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~-~~e~a~~lfeRAL~~~P  104 (1043)
                      +...|..+...+...  ++.+++...|+++++.+|.++.+|...+......| ++++|...|++|++..|
T Consensus         2 ~a~~~~~~g~~~~~~--~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQ--GDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHT--THHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            467888888877766  89999999999999999999999999999999999 79999999999999876

...

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.12  E-value=0.0032  Score=68.39  Aligned_cols=91  Identities=16%  Similarity=0.078  Sum_probs=80.9

Q ss_pred             HcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHH
Q 001619          335 SKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACD  414 (1043)
Q Consensus       335 ~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~  414 (1043)
                      +.+++.+|...|.+|+.+ .|.++-+++..|.-+.++|.++.|.+-.++|+. ..+.+.+.|.+.......+|+++.|.+
T Consensus        93 ~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~-iDp~yskay~RLG~A~~~~gk~~~A~~  170 (304)
T KOG0553|consen   93 KNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS-IDPHYSKAYGRLGLAYLALGKYEEAIE  170 (304)
T ss_pred             HhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh-cChHHHHHHHHHHHHHHccCcHHHHHH
Confidence            457899999999999987 888998999999999999999999999999995 578888888888777778899999999


Q ss_pred             HHHHHHHHHHhhccCCccH
Q 001619          415 TYKEALETAAEQRKFHTLP  433 (1043)
Q Consensus       415 lyekale~~~~~~~~p~~~  433 (1043)
                      .|+|||++      +|.+.
T Consensus       171 aykKaLel------dP~Ne  183 (304)
T KOG0553|consen  171 AYKKALEL------DPDNE  183 (304)
T ss_pred             HHHhhhcc------CCCcH
Confidence            99999998      77665

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.11  E-value=0.0099  Score=60.81  Aligned_cols=86  Identities=7%  Similarity=-0.105  Sum_probs=66.0

Q ss_pred             HhCCCC--HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 001619           31 AEGSLD--FDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCY---GYWRKYADHKARLCSIDKVVEVFERAVQSATY  105 (1043)
Q Consensus        31 ~~nP~d--~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~---~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~  105 (1043)
                      +.+..+  ...|..++..+...  ++.+.+...|++++...|.+.   ..|..++......|.+++|...|++|+...|.
T Consensus        27 ~~~~~~~~a~~~~~~g~~~~~~--g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~  104 (168)
T CHL00033         27 PTTSGEKEAFTYYRDGMSAQSE--GEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF  104 (168)
T ss_pred             cCCchhHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            455555  56677776666655  788888889999988877644   37888888888888899999999999988888


Q ss_pred             CHHHHHHHHHHHH
Q 001619          106 SVDVWFHYCSLSM  118 (1043)
Q Consensus       106 s~~LWl~Y~~~~~  118 (1043)
                      ....|...+.+..
T Consensus       105 ~~~~~~~la~i~~  117 (168)
T CHL00033        105 LPQALNNMAVICH  117 (168)
T ss_pred             cHHHHHHHHHHHH
Confidence            8887777666654

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.10  E-value=0.0094  Score=57.35  Aligned_cols=95  Identities=18%  Similarity=0.162  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhccC---CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcc---cchHHHHH
Q 001619          291 NWHDYLSFAEKQGDFDWVVKLYERCLIPC---ADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKR---LPVIHLFN  364 (1043)
Q Consensus       291 ~W~~yi~~e~~~g~~e~~~~lyerAl~~~---~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~---~p~iwl~~  364 (1043)
                      +++..+......|+.++++.+|++|+..-   ..-...|+.++..+...|++++|..+|++++..+ |+   ...++..+
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~   81 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFL   81 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHH
Confidence            45556666677899999999999999742   3346789999999999999999999999998773 44   55788888


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhh
Q 001619          365 ARYKEQIGDTSAARAAFPESYI  386 (1043)
Q Consensus       365 A~~E~~~g~~d~Ar~ll~ral~  386 (1043)
                      +......|+.++|...+-.++.
T Consensus        82 Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            9889999999999999887775

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.08  E-value=0.11  Score=58.85  Aligned_cols=101  Identities=13%  Similarity=-0.011  Sum_probs=79.9

Q ss_pred             ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCc----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchH
Q 001619          285 DDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADY----PEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVI  360 (1043)
Q Consensus       285 ~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~----~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~i  360 (1043)
                      .|..+..|....+-..++|++..+...|..||...|..    ..|+...|....+.|+..+|...-++|+.+ .+..-+-
T Consensus       245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i-D~syika  323 (486)
T KOG0550|consen  245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI-DSSYIKA  323 (486)
T ss_pred             hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc-CHHHHHH
Confidence            46678899999998888999999999999999887654    567888888888888888888888888876 3233344


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHhhhh
Q 001619          361 HLFNARYKEQIGDTSAARAAFPESYI  386 (1043)
Q Consensus       361 wl~~A~~E~~~g~~d~Ar~ll~ral~  386 (1043)
                      ++..|+..+-.+.++.|+.-|++++.
T Consensus       324 ll~ra~c~l~le~~e~AV~d~~~a~q  349 (486)
T KOG0550|consen  324 LLRRANCHLALEKWEEAVEDYEKAMQ  349 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55667777778888888888888875

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.06  E-value=0.34  Score=63.28  Aligned_cols=128  Identities=18%  Similarity=0.125  Sum_probs=73.6

Q ss_pred             HHHHHHHcCChHHHHHHHHHHhccCC--CcHHHHHH-----HHHHHHHcCChHHHHHHHHHHHHHHhcccc----hHHHH
Q 001619          295 YLSFAEKQGDFDWVVKLYERCLIPCA--DYPEFWMR-----YVDFMESKGGREIASYALDRATQIFLKRLP----VIHLF  363 (1043)
Q Consensus       295 yi~~e~~~g~~e~~~~lyerAl~~~~--~~~~LWl~-----yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p----~iwl~  363 (1043)
                      .+......|+++.+...|++++....  .....|..     .+..+...|+.+.|...+.+.... .....    .++..
T Consensus       618 la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~  696 (903)
T PRK04841        618 LAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRN  696 (903)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHH
Confidence            34444456777777777777754211  11111211     112223356777777766554321 00111    12455


Q ss_pred             HHHHHHHhCCHHHHHHHHHhhhhCC-----ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001619          364 NARYKEQIGDTSAARAAFPESYIDS-----DSRFIEKVTFKANMERRLGNFVAACDTYKEALETA  423 (1043)
Q Consensus       364 ~A~~E~~~g~~d~Ar~ll~ral~~~-----~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~  423 (1043)
                      .+......|++++|..+|.+++...     .....+....++....+.|+.+.|+..+.+|++..
T Consensus       697 ~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la  761 (903)
T PRK04841        697 IARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA  761 (903)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            6667777888888888888776521     12234456666777777888888888888888874

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.04  E-value=0.0013  Score=51.27  Aligned_cols=42  Identities=19%  Similarity=0.299  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 001619           74 GYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCS  115 (1043)
Q Consensus        74 ~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~  115 (1043)
                      ..|..++..+...|++++|+.+|+|+|+.+|.++++|..+++
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            578999999999999999999999999999999999998875

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.04  E-value=0.13  Score=58.22  Aligned_cols=138  Identities=17%  Similarity=0.073  Sum_probs=108.4

Q ss_pred             CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCC------------cHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001619          284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCAD------------YPEFWMRYVDFMESKGGREIASYALDRATQ  351 (1043)
Q Consensus       284 ~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~------------~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~  351 (1043)
                      +++.+.+.-.-+.....-.++.+.+..-|+++|...|.            ..+.|-.-+.-.-+.|++..|-.+|..|+.
T Consensus       198 ld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~  277 (486)
T KOG0550|consen  198 LDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN  277 (486)
T ss_pred             cccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc
Confidence            44555554444443444467888999999999986543            346688888877888999999999999998


Q ss_pred             HHhc----ccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001619          352 IFLK----RLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETA  423 (1043)
Q Consensus       352 ~~~~----~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~  423 (1043)
                      + -|    .+..+++..|..-.++|+..+|..--..|++ ..+.+++-++..+..-.-++.++.|.+-|++|++.-
T Consensus       278 i-dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~-iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~  351 (486)
T KOG0550|consen  278 I-DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK-IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE  351 (486)
T ss_pred             C-CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            7 33    2346777778888999999999999999985 577888888888888888899999999999999973

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.03  E-value=0.012  Score=68.06  Aligned_cols=117  Identities=9%  Similarity=0.066  Sum_probs=98.1

Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCC
Q 001619           44 LSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFED  123 (1043)
Q Consensus        44 i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~  123 (1043)
                      +..+...  +.++.+..+|++..+..|.   .+..+++.....++-.+|..++.++|...|.+.+|+...++|++.. ++
T Consensus       176 l~~l~~t--~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k-~~  249 (395)
T PF09295_consen  176 LKYLSLT--QRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK-KK  249 (395)
T ss_pred             HHHHhhc--ccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-CC
Confidence            4444333  6788999999999999975   4555666666667778999999999999999999999999999998 88


Q ss_pred             hHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHH
Q 001619          124 PNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFV  169 (1043)
Q Consensus       124 ~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~  169 (1043)
                      ++.|..+.++|+...|.++   .-|...++.....|+++.|.-.++
T Consensus       250 ~~lAL~iAk~av~lsP~~f---~~W~~La~~Yi~~~d~e~ALlaLN  292 (395)
T PF09295_consen  250 YELALEIAKKAVELSPSEF---ETWYQLAECYIQLGDFENALLALN  292 (395)
T ss_pred             HHHHHHHHHHHHHhCchhH---HHHHHHHHHHHhcCCHHHHHHHHh
Confidence            9999999999999999855   699999999999999988875554

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.00  E-value=2.3  Score=55.58  Aligned_cols=172  Identities=15%  Similarity=0.045  Sum_probs=106.1

Q ss_pred             HHHHHHHcCChHHHHHHHHHHhccCC-----CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhccc-chHHHH-----
Q 001619          295 YLSFAEKQGDFDWVVKLYERCLIPCA-----DYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRL-PVIHLF-----  363 (1043)
Q Consensus       295 yi~~e~~~g~~e~~~~lyerAl~~~~-----~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~-p~iwl~-----  363 (1043)
                      .+......|+++.+...+++++....     .....+...+..+...|+.+.|+..++++..++.... ...|..     
T Consensus       579 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~  658 (903)
T PRK04841        579 RAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKV  658 (903)
T ss_pred             HHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHH
Confidence            34444457999999999999986421     1234455577788889999999999999987633211 111211     


Q ss_pred             HHHHHHHhCCHHHHHHHHHhhhhCCChh---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHH
Q 001619          364 NARYKEQIGDTSAARAAFPESYIDSDSR---FIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFS  440 (1043)
Q Consensus       364 ~A~~E~~~g~~d~Ar~ll~ral~~~~~~---~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~a  440 (1043)
                      ........|+.+.|..++..........   ....+...+......|+.++|..+|++++...... +..  .    ..+
T Consensus       659 ~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~-g~~--~----~~a  731 (903)
T PRK04841        659 RLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSL-RLM--S----DLN  731 (903)
T ss_pred             HHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-Cch--H----HHH
Confidence            1233345899999999987765421111   11234556667777899999999999999874221 111  0    011


Q ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCc
Q 001619          441 RLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDV  477 (1043)
Q Consensus       441 r~~~~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~  477 (1043)
                      +.. ..+.......|.   .+.|+..|.+|+......
T Consensus       732 ~~~-~~la~a~~~~G~---~~~A~~~L~~Al~la~~~  764 (903)
T PRK04841        732 RNL-ILLNQLYWQQGR---KSEAQRVLLEALKLANRT  764 (903)
T ss_pred             HHH-HHHHHHHHHcCC---HHHHHHHHHHHHHHhCcc
Confidence            111 112222334454   457999999999865443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=96.98  E-value=0.011  Score=60.48  Aligned_cols=81  Identities=14%  Similarity=-0.063  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCC---cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHH
Q 001619          287 IQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCAD---YPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLF  363 (1043)
Q Consensus       287 ~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~---~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~  363 (1043)
                      .....|...+......|+++.+...|++|+...++   ...+|..++..+...|+.++|+..|++|+.. .+.....|..
T Consensus        33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~-~~~~~~~~~~  111 (168)
T CHL00033         33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER-NPFLPQALNN  111 (168)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCcHHHHHH
Confidence            35667888888887889999999999999876544   3457888999889899999999999998876 4444444444


Q ss_pred             HHHHH
Q 001619          364 NARYK  368 (1043)
Q Consensus       364 ~A~~E  368 (1043)
                      .+.+.
T Consensus       112 la~i~  116 (168)
T CHL00033        112 MAVIC  116 (168)
T ss_pred             HHHHH
Confidence            44333

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.97  E-value=0.014  Score=64.22  Aligned_cols=103  Identities=10%  Similarity=0.106  Sum_probs=80.5

Q ss_pred             CHHHHHHHHHHH-HhcCCCcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HH
Q 001619           36 DFDEWTSLLSEI-ENSCPDDIEMIGLVYDSFLAEFPLC---YGYWRKYADHKARLCSIDKVVEVFERAVQSATYS---VD  108 (1043)
Q Consensus        36 d~~~W~~~i~~l-e~~~~~~~~~~r~vyeraL~~~P~s---~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s---~~  108 (1043)
                      +.+.|...+..+ .+.  ++.+++...|+.+++.+|.+   ...|..++......|++++|...|++++..+|.+   .+
T Consensus       141 ~e~~~Y~~A~~l~~~~--~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~d  218 (263)
T PRK10803        141 DANTDYNAAIALVQDK--SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD  218 (263)
T ss_pred             CHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhH
Confidence            445555544333 333  68899999999999999998   3677777777788899999999999999988775   56


Q ss_pred             HHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCC
Q 001619          109 VWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKD  141 (1043)
Q Consensus       109 LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~  141 (1043)
                      .|...+...... ++.+.|+++|++.++.-|..
T Consensus       219 Al~klg~~~~~~-g~~~~A~~~~~~vi~~yP~s  250 (263)
T PRK10803        219 AMFKVGVIMQDK-GDTAKAKAVYQQVIKKYPGT  250 (263)
T ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcCC
Confidence            777666666666 89999999999999887763

>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing

Probab=96.94  E-value=0.001  Score=47.29  Aligned_cols=28  Identities=25%  Similarity=0.587  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 001619           89 IDKVVEVFERAVQSATYSVDVWFHYCSLS  117 (1043)
Q Consensus        89 ~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~  117 (1043)
                      +++||.||+|.|...| ++..|+.|++|+
T Consensus         3 ~dRAR~IyeR~v~~hp-~~k~WikyAkFE   30 (32)
T PF02184_consen    3 FDRARSIYERFVLVHP-EVKNWIKYAKFE   30 (32)
T ss_pred             HHHHHHHHHHHHHhCC-CchHHHHHHHhh
Confidence            5677777777777644 577777777775

They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=96.87  E-value=0.0017  Score=46.49  Aligned_cols=32  Identities=34%  Similarity=0.657  Sum_probs=29.2

Q ss_pred             CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001619           53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKA   84 (1043)
Q Consensus        53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~   84 (1043)
                      ++.+.++.+|++++..+|.+..+|..|++++.
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~   32 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEFEE   32 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence            35788999999999999999999999999875

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.76  E-value=0.0077  Score=52.09  Aligned_cols=57  Identities=23%  Similarity=0.179  Sum_probs=37.1

Q ss_pred             CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 001619           53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDV  109 (1043)
Q Consensus        53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~L  109 (1043)
                      ++.+++..++++++..+|.++.+|..++......|++++|...|+++++..|.....
T Consensus         9 ~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~   65 (73)
T PF13371_consen    9 EDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA   65 (73)
T ss_pred             CCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence            456666666666666666666666666666666666666666666666666655443

>PRK11906 transcriptional regulator; Provisional

Probab=96.71  E-value=0.012  Score=67.96  Aligned_cols=116  Identities=11%  Similarity=0.026  Sum_probs=89.9

Q ss_pred             hHHHHHHHHHHh---ccCCCcHHHHHHHHH--HHH-------HcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhC
Q 001619          305 FDWVVKLYERCL---IPCADYPEFWMRYVD--FME-------SKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIG  372 (1043)
Q Consensus       305 ~e~~~~lyerAl---~~~~~~~~LWl~yAk--~~e-------~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g  372 (1043)
                      .+++..+|+||+   ...|.+...+...|.  +..       ...+..+|+..-+||++. .+.++......+....-.+
T Consensus       274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel-d~~Da~a~~~~g~~~~~~~  352 (458)
T PRK11906        274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI-TTVDGKILAIMGLITGLSG  352 (458)
T ss_pred             HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHhhc
Confidence            558888999999   777777655333333  221       122467788888888877 6677766666666666778


Q ss_pred             CHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619          373 DTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET  422 (1043)
Q Consensus       373 ~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~  422 (1043)
                      +++.|..+|++|+. ..|.++..|..++-+..-.|+.++|++.+++|+.+
T Consensus       353 ~~~~a~~~f~rA~~-L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL  401 (458)
T PRK11906        353 QAKVSHILFEQAKI-HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL  401 (458)
T ss_pred             chhhHHHHHHHHhh-cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence            89999999999995 57888889999988888889999999999999997

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.68  E-value=0.042  Score=60.47  Aligned_cols=105  Identities=11%  Similarity=0.053  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHH
Q 001619           73 YGYWRKYADHK-ARLCSIDKVVEVFERAVQSATYS---VDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMW  148 (1043)
Q Consensus        73 ~~lW~~y~~~e-~~~~~~e~a~~lfeRAL~~~P~s---~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW  148 (1043)
                      .+-|+.++... .+.+++++|...|++++...|.+   ...|..++...... ++++.|+..|++++..-|.+......|
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~-g~~~~A~~~f~~vv~~yP~s~~~~dAl  220 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNK-GKKDDAAYYFASVVKNYPKSPKAADAM  220 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence            46777777654 56789999999999999999998   34555555555555 899999999999999988876666777


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHhc-CCCcc
Q 001619          149 DKYIEFEISQQRWSSLAQIFVQTLR-FPSKK  178 (1043)
Q Consensus       149 ~~yi~fe~~~~~~e~a~~iy~raL~-~p~~~  178 (1043)
                      ...+......|+.+.++++|++.++ .|...
T Consensus       221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            7666666678999999999999986 45443

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=96.68  E-value=2.9  Score=57.09  Aligned_cols=216  Identities=16%  Similarity=0.167  Sum_probs=131.1

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHhcc-------CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchH
Q 001619          288 QLKNWHDYLSFAEKQGDFDWVVKLYERCLIP-------CADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVI  360 (1043)
Q Consensus       288 ~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~-------~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~i  360 (1043)
                      +-+.|..++..-.......+-+-.+.|++..       .....++|+.+|++....|.++.|...+-+|-+.   ..|.+
T Consensus      1628 ~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~---r~~~i 1704 (2382)
T KOG0890|consen 1628 NSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES---RLPEI 1704 (2382)
T ss_pred             cchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc---ccchH
Confidence            3478988887765444445555556665531       3456799999999999999999999988888765   47899


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHhhhhCCCh------------hhH----HHHHHHHHHHHHcCCH--HHHHHHHHHHHHH
Q 001619          361 HLFNARYKEQIGDTSAARAAFPESYIDSDS------------RFI----EKVTFKANMERRLGNF--VAACDTYKEALET  422 (1043)
Q Consensus       361 wl~~A~~E~~~g~~d~Ar~ll~ral~~~~~------------~~~----~lw~~~a~lE~~~G~~--e~Ar~lyekale~  422 (1043)
                      .++.|++++..|+-..|..++...+....+            ...    +..+++..+.+..|++  +...+.|..+++.
T Consensus      1705 ~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ai 1784 (2382)
T KOG0890|consen 1705 VLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAI 1784 (2382)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence            999999999999999999999999853211            111    2233444555556664  4677888888886


Q ss_pred             HHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCC-----chHHH---HHHHHHHHhhcCCCccccCChhhHHHHHHHHH
Q 001619          423 AAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGR-----SHISI---VDAVISNALYSRPDVLKVFSLEDVEDISSLYL  494 (1043)
Q Consensus       423 ~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~-----~~ler---aR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl  494 (1043)
                      .. .|...   ..|+  |    .+|.+++......     .+...   +-.-|.+|+..+-..   + -+....+-.+|+
T Consensus      1785 l~-ewe~~---hy~l--~----~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~~---i-yqsmPRllTLWL 1850 (2382)
T KOG0890|consen 1785 LP-EWEDK---HYHL--G----KYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQH---L-YQSMPRLLTLWL 1850 (2382)
T ss_pred             cc-cccCc---eeeH--H----HHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcchh---H-HHhhhHHHHHHH
Confidence            22 11111   1111  1    1223333222110     01111   112224777643322   1 122445667888


Q ss_pred             HH-----H-HH-------cCCHHHHHHHHHHHHhhCCCC
Q 001619          495 QF-----L-DL-------CGTIHDIRNAWNQHIKLFPHT  520 (1043)
Q Consensus       495 ~f-----e-e~-------~G~~~~a~~~~~ra~k~~p~~  520 (1043)
                      ++     . +.       -++++.+.+...++++.+|.-
T Consensus      1851 D~~t~~~~~ek~~r~ei~s~~~~~in~~i~~~~~~lp~Y 1889 (2382)
T KOG0890|consen 1851 DIGTHISSVEKAPRGEIVSKNLKLINSLIEEALEHLPTY 1889 (2382)
T ss_pred             hhcchhcccccCChhhhhhhhHHHHHHHHHHHHHhCcch
Confidence            86     2 11       245667777888888888864

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.67  E-value=1.7  Score=49.39  Aligned_cols=135  Identities=16%  Similarity=0.113  Sum_probs=87.1

Q ss_pred             hcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccH
Q 001619          354 LKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLP  433 (1043)
Q Consensus       354 ~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~  433 (1043)
                      .+..|.|-..+|....+.|..+.|.++.+.+++..-...  + +.++.. -+.|+...-.+..++.+..      .|..|
T Consensus       259 lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L-~~~~~~-l~~~d~~~l~k~~e~~l~~------h~~~p  328 (400)
T COG3071         259 LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--L-CRLIPR-LRPGDPEPLIKAAEKWLKQ------HPEDP  328 (400)
T ss_pred             hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--H-HHHHhh-cCCCCchHHHHHHHHHHHh------CCCCh
Confidence            445678888888888888888888888888886432221  2 222222 1346777777888888886      56667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001619          434 LLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQH  513 (1043)
Q Consensus       434 ~l~~~~ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra  513 (1043)
                      .++....++.+        +.+.   ..+|...|+.|+...|+.          ..|..-....+..|....|..+.+.+
T Consensus       329 ~L~~tLG~L~~--------k~~~---w~kA~~~leaAl~~~~s~----------~~~~~la~~~~~~g~~~~A~~~r~e~  387 (400)
T COG3071         329 LLLSTLGRLAL--------KNKL---WGKASEALEAALKLRPSA----------SDYAELADALDQLGEPEEAEQVRREA  387 (400)
T ss_pred             hHHHHHHHHHH--------HhhH---HHHHHHHHHHHHhcCCCh----------hhHHHHHHHHHHcCChHHHHHHHHHH
Confidence            66655544333        1111   335888888888876654          23434444446678888888888888


Q ss_pred             HhhCCC
Q 001619          514 IKLFPH  519 (1043)
Q Consensus       514 ~k~~p~  519 (1043)
                      +-.+-.
T Consensus       388 L~~~~~  393 (400)
T COG3071         388 LLLTRQ  393 (400)
T ss_pred             HHHhcC
Confidence            865543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.63  E-value=0.0073  Score=52.23  Aligned_cols=53  Identities=28%  Similarity=0.412  Sum_probs=36.9

Q ss_pred             HHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001619          300 EKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQI  352 (1043)
Q Consensus       300 ~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~  352 (1043)
                      ...++++.+..++++++...|....+|..++.++...|++++|+..|+++++.
T Consensus         6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    6 LQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            34566777777777777777777777777777777777777777777777655

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=96.59  E-value=3.5  Score=56.33  Aligned_cols=237  Identities=12%  Similarity=0.128  Sum_probs=143.5

Q ss_pred             ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhccc-------
Q 001619          285 DDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRL-------  357 (1043)
Q Consensus       285 ~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~-------  357 (1043)
                      +..-.+.|..++.+.++.|.+++|....=.|...  ..+.+.+..|+++|..|+...|..+++..+..+.+++       
T Consensus      1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~--r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~ 1743 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKES--RLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDT 1743 (2382)
T ss_pred             cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc--ccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcccc
Confidence            3456789999999999999999999888888764  3789999999999999999999999999997755542       


Q ss_pred             ---------chHHHHHHHHHHHhCCHH--HHHHHHHhhhhCCC---hhh---HHHHHHHHHHH-----HHcCCHHH---H
Q 001619          358 ---------PVIHLFNARYKEQIGDTS--AARAAFPESYIDSD---SRF---IEKVTFKANME-----RRLGNFVA---A  412 (1043)
Q Consensus       358 ---------p~iwl~~A~~E~~~g~~d--~Ar~ll~ral~~~~---~~~---~~lw~~~a~lE-----~~~G~~e~---A  412 (1043)
                               ...-+.+++|.+..|+++  .-.+.|..+++...   .++   ..++.++....     ++.|.+..   +
T Consensus      1744 p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~ 1823 (2382)
T KOG0890|consen 1744 PQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKA 1823 (2382)
T ss_pred             chhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHH
Confidence                     134555677778888754  35566776664211   111   12222221111     12355555   2


Q ss_pred             HHHHHHHHHHHHhh--ccCCccHHHHHHHHHHHHHHHHHHHHHhCCC----chHHHHHHHHHHHhhcCCCccccCChhhH
Q 001619          413 CDTYKEALETAAEQ--RKFHTLPLLYVQFSRLTYTELIKFTMVHGGR----SHISIVDAVISNALYSRPDVLKVFSLEDV  486 (1043)
Q Consensus       413 r~lyekale~~~~~--~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~----~~leraR~l~erAl~~~p~~~~~l~~~~~  486 (1043)
                      .--|.+++......  ...|...-||++++...+.     ..+.|+.    .+++...++++.|+...|.-         
T Consensus      1824 ~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~-----~ek~~r~ei~s~~~~~in~~i~~~~~~lp~Y--------- 1889 (2382)
T KOG0890|consen 1824 IYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISS-----VEKAPRGEIVSKNLKLINSLIEEALEHLPTY--------- 1889 (2382)
T ss_pred             HHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhcc-----cccCChhhhhhhhHHHHHHHHHHHHHhCcch---------
Confidence            33334555431100  0122233344443221110     1112211    13667888999999988874         


Q ss_pred             HHHHHHHHHHHHH--cC---CHHHHHHHHHHHHhhCCCCccccc------cCccchhhhHHHh
Q 001619          487 EDISSLYLQFLDL--CG---TIHDIRNAWNQHIKLFPHTVRTAY------ECPGRETKSLRAF  538 (1043)
Q Consensus       487 ~~l~~lwl~fee~--~G---~~~~a~~~~~ra~k~~p~~~~~~~------~~~~~k~~s~~~~  538 (1043)
                       .++-.|-++..+  |-   -..-++.+..+.+-++|.-...++      ..+.|+.|..+-|
T Consensus      1890 -~f~ta~sQLlSRicH~~~dV~~vl~~II~~l~~~YPqq~lW~~~a~~kS~~p~R~~R~keIL 1951 (2382)
T KOG0890|consen 1890 -QFYTAYSQLLSRICHPNQDVARVLKHIIAKLVLAYPQQTLWQSAALSKSNVPSRVERCKEIL 1951 (2382)
T ss_pred             -HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCchHHHHHHHHHHhcccHHHHHHHHHHH
Confidence             455667777743  33   355677888888888898766211      2244555544444

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.56  E-value=0.033  Score=67.32  Aligned_cols=144  Identities=6%  Similarity=-0.045  Sum_probs=107.1

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHc-------CCHHHHHHHH
Q 001619           28 EFIAEGSLDFDEWTSLLSEIEN---SCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHK-ARL-------CSIDKVVEVF   96 (1043)
Q Consensus        28 ~~i~~nP~d~~~W~~~i~~le~---~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e-~~~-------~~~e~a~~lf   96 (1043)
                      .....-|.|..+|..|++...-   ...+...+++..|+++++..|+....|-.++-.. ...       ....++....
T Consensus       328 ~~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~  407 (517)
T PRK10153        328 RLQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL  407 (517)
T ss_pred             HHhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            3344567888888888765332   1224577899999999999999877776543321 111       1245677777


Q ss_pred             HHHHHh--cCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcC
Q 001619           97 ERAVQS--ATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRF  174 (1043)
Q Consensus        97 eRAL~~--~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~  174 (1043)
                      ++++..  .+....++..++-..... ++++.|...|+||+..-+    +...|..+.++....|+.+.|...|.+++.+
T Consensus       408 ~~a~al~~~~~~~~~~~ala~~~~~~-g~~~~A~~~l~rAl~L~p----s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L  482 (517)
T PRK10153        408 DNIVALPELNVLPRIYEILAVQALVK-GKTDEAYQAINKAIDLEM----SWLNYVLLGKVYELKGDNRLAADAYSTAFNL  482 (517)
T ss_pred             HHhhhcccCcCChHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            887774  677788888887666666 899999999999999775    3467888888889999999999999999976


Q ss_pred             CC
Q 001619          175 PS  176 (1043)
Q Consensus       175 p~  176 (1043)
                      .+
T Consensus       483 ~P  484 (517)
T PRK10153        483 RP  484 (517)
T ss_pred             CC
Confidence            43

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.56  E-value=0.0041  Score=48.39  Aligned_cols=40  Identities=20%  Similarity=0.135  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHH
Q 001619          325 FWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNA  365 (1043)
Q Consensus       325 LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A  365 (1043)
                      +|+.++..+...|++++|+.+|+++++. .|+++.+|..++
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~-~P~~~~a~~~La   42 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALAL-DPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcCCHHHHHHhh
Confidence            4555555555555555555555555544 444444444443

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=96.44  E-value=1.6  Score=49.81  Aligned_cols=119  Identities=15%  Similarity=0.250  Sum_probs=88.3

Q ss_pred             hHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccC----CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHH-HHhcc----
Q 001619          286 DIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPC----ADYPEFWMRYVDFMESKGGREIASYALDRATQ-IFLKR----  356 (1043)
Q Consensus       286 p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~----~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~-~~~~~----  356 (1043)
                      ......|.+++.+..+.|.++.|...+.++....    ...+.+-+.+|+++|..|+..+|...++..+. .+.+.    
T Consensus       143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~  222 (352)
T PF02259_consen  143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI  222 (352)
T ss_pred             hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence            4566899999999999999999999999988643    22578889999999999999999999988877 21111    


Q ss_pred             ----------------------------cchHHHHHHHHHHHh------CCHHHHHHHHHhhhhCCChhhHHHHHHHHHH
Q 001619          357 ----------------------------LPVIHLFNARYKEQI------GDTSAARAAFPESYIDSDSRFIEKVTFKANM  402 (1043)
Q Consensus       357 ----------------------------~p~iwl~~A~~E~~~------g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~l  402 (1043)
                                                  ...+++..+++....      +..+.+.+.|..++. ..+...+.|..|+.+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~~~k~~~~~a~~  301 (352)
T PF02259_consen  223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATK-LDPSWEKAWHSWALF  301 (352)
T ss_pred             cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH-hChhHHHHHHHHHHH
Confidence                                        124566666666666      777777777777775 345556677777666


Q ss_pred             HHH
Q 001619          403 ERR  405 (1043)
Q Consensus       403 E~~  405 (1043)
                      ..+
T Consensus       302 ~~~  304 (352)
T PF02259_consen  302 NDK  304 (352)
T ss_pred             HHH
Confidence            554

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PRK11906 transcriptional regulator; Provisional

Probab=96.38  E-value=0.071  Score=61.87  Aligned_cols=116  Identities=9%  Similarity=-0.031  Sum_probs=87.9

Q ss_pred             HHHHHH---HhCCCCHHHHHHHHHHHH-----hc--CCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 001619           25 GLEEFI---AEGSLDFDEWTSLLSEIE-----NS--CPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVE   94 (1043)
Q Consensus        25 ~le~~i---~~nP~d~~~W~~~i~~le-----~~--~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~   94 (1043)
                      .|.+++   ..+|....++--+.....     ..  .+.+..++.+.-+++++..|.+...-...+-...-.++++.+..
T Consensus       280 lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~  359 (458)
T PRK11906        280 IFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHI  359 (458)
T ss_pred             HHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHH
Confidence            477888   777776666555433211     11  13567788899999999999987654444443334456999999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCC
Q 001619           95 VFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKD  141 (1043)
Q Consensus        95 lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~  141 (1043)
                      +|+||+..+|++...|..++-++.-. |..+.+++.+++|++.-|..
T Consensus       360 ~f~rA~~L~Pn~A~~~~~~~~~~~~~-G~~~~a~~~i~~alrLsP~~  405 (458)
T PRK11906        360 LFEQAKIHSTDIASLYYYRALVHFHN-EKIEEARICIDKSLQLEPRR  405 (458)
T ss_pred             HHHHHhhcCCccHHHHHHHHHHHHHc-CCHHHHHHHHHHHhccCchh
Confidence            99999999999999999988777666 89999999999999987764

>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing

Probab=96.32  E-value=0.0047  Score=43.95  Aligned_cols=30  Identities=23%  Similarity=0.532  Sum_probs=27.2

Q ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001619           54 DIEMIGLVYDSFLAEFPLCYGYWRKYADHKA   84 (1043)
Q Consensus        54 ~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~   84 (1043)
                      .++.+|.||||++...|. ++.|++|+++|.
T Consensus         2 E~dRAR~IyeR~v~~hp~-~k~WikyAkFEe   31 (32)
T PF02184_consen    2 EFDRARSIYERFVLVHPE-VKNWIKYAKFEE   31 (32)
T ss_pred             hHHHHHHHHHHHHHhCCC-chHHHHHHHhhc
Confidence            478899999999999985 999999999985

They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=96.28  E-value=0.2  Score=57.40  Aligned_cols=121  Identities=17%  Similarity=0.152  Sum_probs=94.2

Q ss_pred             CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc---ccchHHHHHHHHHHHhCCHHHHHHHHHhhhhC-CC-----
Q 001619          319 CADYPEFWMRYVDFMESKGGREIASYALDRATQIFLK---RLPVIHLFNARYKEQIGDTSAARAAFPESYID-SD-----  389 (1043)
Q Consensus       319 ~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~---~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~-~~-----  389 (1043)
                      .......|+.+|+...+.|.++.|...+.++......   ..|.+-+.+|++.+..|+-+.|...++..+.. ..     
T Consensus       142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~  221 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS  221 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence            3456688999999999999999999999988875311   25789999999999999999999998877761 00     


Q ss_pred             ---------------------------hhhHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHhhccCCccHHHH
Q 001619          390 ---------------------------SRFIEKVTFKANMERRL------GNFVAACDTYKEALETAAEQRKFHTLPLLY  436 (1043)
Q Consensus       390 ---------------------------~~~~~lw~~~a~lE~~~------G~~e~Ar~lyekale~~~~~~~~p~~~~l~  436 (1043)
                                                 ....+++..++.+-...      +..+.+.+.|.++++.      .|...+.|
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~------~~~~~k~~  295 (352)
T PF02259_consen  222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL------DPSWEKAW  295 (352)
T ss_pred             ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh------ChhHHHHH
Confidence                                       11245677777777777      8899999999999997      55566777


Q ss_pred             HHHHHHHHH
Q 001619          437 VQFSRLTYT  445 (1043)
Q Consensus       437 ~~~ar~~~~  445 (1043)
                      ..||.+...
T Consensus       296 ~~~a~~~~~  304 (352)
T PF02259_consen  296 HSWALFNDK  304 (352)
T ss_pred             HHHHHHHHH
Confidence            777665553

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.10  E-value=2.5  Score=47.17  Aligned_cols=73  Identities=15%  Similarity=-0.049  Sum_probs=44.7

Q ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001619          345 ALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYK  417 (1043)
Q Consensus       345 ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lye  417 (1043)
                      +|-..++.|.-+.....+.+|.-....|++.+|.++|-+.-.....+..-+.+..++...+.|....|..+|-
T Consensus       380 ~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l  452 (557)
T KOG3785|consen  380 TYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMML  452 (557)
T ss_pred             HHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence            3444555555555567777888888899999999999876432211111122223445556677777777663

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.07  E-value=1.9  Score=46.98  Aligned_cols=69  Identities=9%  Similarity=-0.039  Sum_probs=53.5

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCC
Q 001619           72 CYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSV-----DVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYL  143 (1043)
Q Consensus        72 s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~-----~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~  143 (1043)
                      +...+...+......|++++|...|++++...|.+.     .+|+.|+-|..   ++.+.|...|++.++.-|.+..
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~---~~y~~A~~~~e~fi~~~P~~~~  104 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKN---ADLPLAQAAIDRFIRLNPTHPN  104 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHhCcCCCc
Confidence            566666666666778899999999999999988875     36777666643   6788999999999998887653

>PRK15331 chaperone protein SicA; Provisional

Probab=96.04  E-value=0.11  Score=52.32  Aligned_cols=102  Identities=15%  Similarity=0.022  Sum_probs=86.3

Q ss_pred             ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHH
Q 001619          285 DDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFN  364 (1043)
Q Consensus       285 ~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~  364 (1043)
                      .....+.-..++--.-..|+++.|..+|.-.+...+...+.|+.++-.+...+.++.|...|..|..+ .+++|...+..
T Consensus        33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~~~dp~p~f~a  111 (165)
T PRK15331         33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-LKNDYRPVFFT  111 (165)
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccCCCCccchH
Confidence            34445444555544456899999999999999888888999999999999999999999999999876 56788888888


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhhC
Q 001619          365 ARYKEQIGDTSAARAAFPESYID  387 (1043)
Q Consensus       365 A~~E~~~g~~d~Ar~ll~ral~~  387 (1043)
                      +.+....|+.+.|+..|..++..
T Consensus       112 gqC~l~l~~~~~A~~~f~~a~~~  134 (165)
T PRK15331        112 GQCQLLMRKAAKARQCFELVNER  134 (165)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhC
Confidence            99999999999999999999864

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=95.80  E-value=6.6  Score=47.57  Aligned_cols=43  Identities=14%  Similarity=0.142  Sum_probs=30.2

Q ss_pred             CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 001619           53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVF   96 (1043)
Q Consensus        53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lf   96 (1043)
                      ++++++. .|-..++.-|..+.+|+..+++..+.|+.--|..+|
T Consensus       458 ~df~ra~-afles~~~~~da~amw~~laelale~~nl~iaercf  500 (1636)
T KOG3616|consen  458 GDFDRAT-AFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCF  500 (1636)
T ss_pred             CchHHHH-HHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHH
Confidence            5666665 445566778889999999999888777654444444

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=95.80  E-value=6.6  Score=47.56  Aligned_cols=29  Identities=24%  Similarity=0.366  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 001619          488 DISSLYLQFLDLCGTIHDIRNAWNQHIKL  516 (1043)
Q Consensus       488 ~l~~lwl~fee~~G~~~~a~~~~~ra~k~  516 (1043)
                      ++-..|.-|.+..|..+.|.+-|-.+++.
T Consensus       996 ~vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen  996 EVHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred             cchhHHhhhhhhccchhhhhHhhHHHhhc
Confidence            34556777888888888888888887764

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=95.58  E-value=0.28  Score=47.25  Aligned_cols=80  Identities=13%  Similarity=0.033  Sum_probs=36.2

Q ss_pred             CcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHhhCCChHH
Q 001619           53 DDIEMIGLVYDSFLAEFPLC---YGYWRKYADHKARLCSIDKVVEVFERAVQSATY---SVDVWFHYCSLSMSTFEDPND  126 (1043)
Q Consensus        53 ~~~~~~r~vyeraL~~~P~s---~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~---s~~LWl~Y~~~~~~~~~~~e~  126 (1043)
                      |..+++..+|++++..-...   .+.|+.+.......|.+++|..+|++++..+|.   +..++..|+-.+... +..++
T Consensus        15 G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~-gr~~e   93 (120)
T PF12688_consen   15 GREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL-GRPKE   93 (120)
T ss_pred             CCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC-CCHHH
Confidence            44445555555555432222   234444444444445555555555555555444   444444444333333 44444


Q ss_pred             HHHHHHH
Q 001619          127 VRRLFKR  133 (1043)
Q Consensus       127 ar~lfer  133 (1043)
                      +..++-.
T Consensus        94 Al~~~l~  100 (120)
T PF12688_consen   94 ALEWLLE  100 (120)
T ss_pred             HHHHHHH
Confidence            4444433

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.55  E-value=3.1  Score=44.42  Aligned_cols=57  Identities=19%  Similarity=0.286  Sum_probs=37.7

Q ss_pred             HHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHH
Q 001619          300 EKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARA  379 (1043)
Q Consensus       300 ~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~  379 (1043)
                      ++...+.+|..+|+||.              ..|..+|..+.|...++||-++                .++.+.+.|..
T Consensus        82 ke~~klsEvvdl~eKAs--------------~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~Alq  131 (308)
T KOG1585|consen   82 KELSKLSEVVDLYEKAS--------------ELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQ  131 (308)
T ss_pred             HHHHHhHHHHHHHHHHH--------------HHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHH
Confidence            33445556666666664              3456678888888888888776                23456677777


Q ss_pred             HHHhhhh
Q 001619          380 AFPESYI  386 (1043)
Q Consensus       380 ll~ral~  386 (1043)
                      +|.+++.
T Consensus       132 lYqrala  138 (308)
T KOG1585|consen  132 LYQRALA  138 (308)
T ss_pred             HHHHHHH
Confidence            7777764

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.53  E-value=0.19  Score=56.27  Aligned_cols=199  Identities=12%  Similarity=0.098  Sum_probs=120.2

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHhccC-C-CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHH
Q 001619          289 LKNWHDYLSFAEKQGDFDWVVKLYERCLIPC-A-DYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNAR  366 (1043)
Q Consensus       289 ~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~-~-~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~  366 (1043)
                      ......++.|+....+.+.+...++..+... + ..+.+-+--|..+...|++++|..++.++      ...+.....+.
T Consensus        66 l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vq  139 (290)
T PF04733_consen   66 LQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQ  139 (290)
T ss_dssp             CHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHH
Confidence            3455666777754456667777776666432 2 33344444455666678888888887664      23345566778


Q ss_pred             HHHHhCCHHHHHHHHHhhhhCCC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHH
Q 001619          367 YKEQIGDTSAARAAFPESYIDSD-SRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYT  445 (1043)
Q Consensus       367 ~E~~~g~~d~Ar~ll~ral~~~~-~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~  445 (1043)
                      +..+.+++|.|++.|+++..... .....+...|+.|-.-.+++..|.-+|++..+.      ++.++.+..-.|     
T Consensus       140 i~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~------~~~t~~~lng~A-----  208 (290)
T PF04733_consen  140 ILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK------FGSTPKLLNGLA-----  208 (290)
T ss_dssp             HHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC------S--SHHHHHHHH-----
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc------cCCCHHHHHHHH-----
Confidence            88999999999999998864322 223456777777776556799999999997664      444454432111     


Q ss_pred             HHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCC
Q 001619          446 ELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTI-HDIRNAWNQHIKLFPH  519 (1043)
Q Consensus       446 ~~~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~-~~a~~~~~ra~k~~p~  519 (1043)
                       ..  ....|   +.+.|..+++.|+..+|.+        ...+.++ +-+....|.. +.+.+......+..|.
T Consensus       209 -~~--~l~~~---~~~eAe~~L~~al~~~~~~--------~d~LaNl-iv~~~~~gk~~~~~~~~l~qL~~~~p~  268 (290)
T PF04733_consen  209 -VC--HLQLG---HYEEAEELLEEALEKDPND--------PDTLANL-IVCSLHLGKPTEAAERYLSQLKQSNPN  268 (290)
T ss_dssp             -HH--HHHCT----HHHHHHHHHHHCCC-CCH--------HHHHHHH-HHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred             -HH--HHHhC---CHHHHHHHHHHHHHhccCC--------HHHHHHH-HHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence             11  11223   3678999999999987765        4455544 2222344555 5556666665555554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.40  E-value=0.43  Score=47.33  Aligned_cols=64  Identities=9%  Similarity=0.160  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhc
Q 001619           74 GYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFV  138 (1043)
Q Consensus        74 ~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~l  138 (1043)
                      .....++......|++++|..++++++...|.+..+|..+++.+... |+...|.++|++..+.+
T Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~-g~~~~A~~~Y~~~~~~l  126 (146)
T PF03704_consen   63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQ-GRRAEALRVYERYRRRL  126 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHT-T-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHH
Confidence            34445555555667788888888888888888888888888887777 77777888887776543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.27  E-value=0.15  Score=59.10  Aligned_cols=69  Identities=10%  Similarity=-0.023  Sum_probs=64.7

Q ss_pred             hCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001619           32 EGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGY---WRKYADHKARLCSIDKVVEVFERAVQS  102 (1043)
Q Consensus        32 ~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~l---W~~y~~~e~~~~~~e~a~~lfeRAL~~  102 (1043)
                      .+|.+...|..+...+...  ++++++...|+++|+.+|++...   |...+......|++++|...|++|++.
T Consensus        70 ~dP~~a~a~~NLG~AL~~l--GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSK--GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            7899999999998888777  89999999999999999999865   999999999999999999999999997

>PRK15331 chaperone protein SicA; Provisional

Probab=95.23  E-value=0.17  Score=51.02  Aligned_cols=83  Identities=8%  Similarity=-0.017  Sum_probs=42.8

Q ss_pred             CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHH
Q 001619           53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFK  132 (1043)
Q Consensus        53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lfe  132 (1043)
                      |+++.+..+|+-++...|.++++|+-++...-..+++++|..+|..|....+.++.--..-+...+.. ++.+.|+..|+
T Consensus        51 Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l-~~~~~A~~~f~  129 (165)
T PRK15331         51 GRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLM-RKAAKARQCFE  129 (165)
T ss_pred             CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHh-CCHHHHHHHHH
Confidence            55555555555555555555555555555555555555555555555555444443222222222222 45555555555


Q ss_pred             HHHH
Q 001619          133 RALS  136 (1043)
Q Consensus       133 rAL~  136 (1043)
                      -|+.
T Consensus       130 ~a~~  133 (165)
T PRK15331        130 LVNE  133 (165)
T ss_pred             HHHh
Confidence            5554

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.22  E-value=0.25  Score=57.43  Aligned_cols=69  Identities=12%  Similarity=-0.046  Sum_probs=64.9

Q ss_pred             CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHH---HHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001619          284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPE---FWMRYVDFMESKGGREIASYALDRATQI  352 (1043)
Q Consensus       284 ~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~---LWl~yAk~~e~~g~~e~Ar~ilerA~~~  352 (1043)
                      .+|.....|..+...+...|++++|+..|++||..+|++.+   .|+..+..|...|++++|...|++|+..
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            67899999999999998999999999999999999999885   4999999999999999999999999986

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=95.22  E-value=2.3  Score=45.00  Aligned_cols=134  Identities=22%  Similarity=0.239  Sum_probs=79.8

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHhccCCC---cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccc---hH--HHHH
Q 001619          293 HDYLSFAEKQGDFDWVVKLYERCLIPCAD---YPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLP---VI--HLFN  364 (1043)
Q Consensus       293 ~~yi~~e~~~g~~e~~~~lyerAl~~~~~---~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p---~i--wl~~  364 (1043)
                      ...+.-....|+++.++..|++.+...|.   ....++..+.-+...|+.+.|+..|++-++.+. ..+   .+  ++..
T Consensus         9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP-~~~~~~~A~Y~~g~   87 (203)
T PF13525_consen    9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP-NSPKADYALYMLGL   87 (203)
T ss_dssp             HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T-T-TTHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCcchhhHHHHHHH
Confidence            33344444589999999999999986554   345566666666678999999999999998744 333   22  2233


Q ss_pred             HHHH---------HHhCCHHHHHHHHHhhhhCCC-hhhH--------HH-------HHHHHHHHHHcCCHHHHHHHHHHH
Q 001619          365 ARYK---------EQIGDTSAARAAFPESYIDSD-SRFI--------EK-------VTFKANMERRLGNFVAACDTYKEA  419 (1043)
Q Consensus       365 A~~E---------~~~g~~d~Ar~ll~ral~~~~-~~~~--------~l-------w~~~a~lE~~~G~~e~Ar~lyeka  419 (1043)
                      +.+.         ...+....|...|...+...+ ..+.        .+       =+.-++|..+.|.+..|..-|+.+
T Consensus        88 ~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v  167 (203)
T PF13525_consen   88 SYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYV  167 (203)
T ss_dssp             HHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHH
T ss_pred             HHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            3332         223345677788887776321 1110        01       111255666678888888888888


Q ss_pred             HHHHHhhccCCccH
Q 001619          420 LETAAEQRKFHTLP  433 (1043)
Q Consensus       420 le~~~~~~~~p~~~  433 (1043)
                      |+.      +|.++
T Consensus       168 ~~~------yp~t~  175 (203)
T PF13525_consen  168 IEN------YPDTP  175 (203)
T ss_dssp             HHH------STTSH
T ss_pred             HHH------CCCCc
Confidence            886      66554

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.21  E-value=0.33  Score=52.74  Aligned_cols=94  Identities=17%  Similarity=0.141  Sum_probs=68.9

Q ss_pred             HHcCChHHHHHHHHHHHHHHhc--ccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCC--ChhhHHHHHHHHHHHHHcCCH
Q 001619          334 ESKGGREIASYALDRATQIFLK--RLPVIHLFNARYKEQIGDTSAARAAFPESYIDS--DSRFIEKVTFKANMERRLGNF  409 (1043)
Q Consensus       334 e~~g~~e~Ar~ilerA~~~~~~--~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~--~~~~~~lw~~~a~lE~~~G~~  409 (1043)
                      ...|++..|...|..-++.|..  ..+.-.+.+++.....|+++.|-.+|.++.+..  .++..+..++.+....++|+.
T Consensus       152 ~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~  231 (262)
T COG1729         152 YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNT  231 (262)
T ss_pred             HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCH
Confidence            4567888888888777766443  123333334566777899999999998888642  234456778888888889999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCccH
Q 001619          410 VAACDTYKEALETAAEQRKFHTLP  433 (1043)
Q Consensus       410 e~Ar~lyekale~~~~~~~~p~~~  433 (1043)
                      +.|+.+|+..++.      +|..+
T Consensus       232 d~A~atl~qv~k~------YP~t~  249 (262)
T COG1729         232 DEACATLQQVIKR------YPGTD  249 (262)
T ss_pred             HHHHHHHHHHHHH------CCCCH
Confidence            9999999999997      77655

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.21  E-value=4  Score=41.27  Aligned_cols=201  Identities=18%  Similarity=0.144  Sum_probs=127.4

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhc--cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHH-H
Q 001619          291 NWHDYLSFAEKQGDFDWVVKLYERCLI--PCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNAR-Y  367 (1043)
Q Consensus       291 ~W~~yi~~e~~~g~~e~~~~lyerAl~--~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~-~  367 (1043)
                      ............+++..+...+..++.  ..+.....|...+.++...+++..|..++..++.. .+.....+..... .
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  139 (291)
T COG0457          61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALAL-DPDPDLAEALLALGA  139 (291)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcC-CCCcchHHHHHHHHH
Confidence            444445555557778888888888886  56777788888888888888888888888888764 2222233444444 6


Q ss_pred             HHHhCCHHHHHHHHHhhhhCCCh---hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCc-cHHHHHHHHHHH
Q 001619          368 KEQIGDTSAARAAFPESYIDSDS---RFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHT-LPLLYVQFSRLT  443 (1043)
Q Consensus       368 E~~~g~~d~Ar~ll~ral~~~~~---~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~-~~~l~~~~ar~~  443 (1043)
                      ....|+++.|...|.+++. ..+   .....+..........|+.+.+...+.+++...      +. ....+.      
T Consensus       140 ~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~------  206 (291)
T COG0457         140 LYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLN------PDDDAEALL------  206 (291)
T ss_pred             HHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC------cccchHHHH------
Confidence            7788999999999998875 333   233344444444555688999999999988862      22 111111      


Q ss_pred             HHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 001619          444 YTELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPH  519 (1043)
Q Consensus       444 ~~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~~p~  519 (1043)
                        .........+   ..+.+...+..++...+..        ..........+. ..|..+.+...+.++++..+.
T Consensus       207 --~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~--------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         207 --NLGLLYLKLG---KYEEALEYYEKALELDPDN--------AEALYNLALLLL-ELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             --HhhHHHHHcc---cHHHHHHHHHHHHhhCccc--------HHHHhhHHHHHH-HcCCHHHHHHHHHHHHHhCcc
Confidence              1111111112   2456778888888766651        122333333444 667888888888888888775

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=95.20  E-value=0.82  Score=46.70  Aligned_cols=125  Identities=18%  Similarity=0.151  Sum_probs=101.4

Q ss_pred             HHHHHHHcCChHHHHHHHHHHhc-cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc--ccchHHHHHHHHHHHh
Q 001619          295 YLSFAEKQGDFDWVVKLYERCLI-PCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLK--RLPVIHLFNARYKEQI  371 (1043)
Q Consensus       295 yi~~e~~~g~~e~~~~lyerAl~-~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~--~~p~iwl~~A~~E~~~  371 (1043)
                      ++.-..+.|+..+++..|+.++. .+.+...+-+..|+-....++...|...+++..+. ++  ..|+-.+.++...--.
T Consensus        95 La~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~-~pa~r~pd~~Ll~aR~laa~  173 (251)
T COG4700          95 LANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY-NPAFRSPDGHLLFARTLAAQ  173 (251)
T ss_pred             HHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc-CCccCCCCchHHHHHHHHhc
Confidence            34444457999999999999997 57788888899998888889999999999998876 34  4678899999999999


Q ss_pred             CCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619          372 GDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET  422 (1043)
Q Consensus       372 g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~  422 (1043)
                      |.+..|+..|+-+++ ..|+ ..--+.|+.|..+.|..+++++-|....+.
T Consensus       174 g~~a~Aesafe~a~~-~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~  222 (251)
T COG4700         174 GKYADAESAFEVAIS-YYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDT  222 (251)
T ss_pred             CCchhHHHHHHHHHH-hCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence            999999999999996 3443 345667888999999888877766555554

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=95.17  E-value=2.1  Score=45.17  Aligned_cols=23  Identities=17%  Similarity=0.197  Sum_probs=19.1

Q ss_pred             cCCHHHHHHHHHHHHhhCCCCcc
Q 001619          500 CGTIHDIRNAWNQHIKLFPHTVR  522 (1043)
Q Consensus       500 ~G~~~~a~~~~~ra~k~~p~~~~  522 (1043)
                      .|....|..-+...++.+|.+..
T Consensus       154 ~~~y~aA~~r~~~v~~~yp~t~~  176 (203)
T PF13525_consen  154 RGKYKAAIIRFQYVIENYPDTPA  176 (203)
T ss_dssp             TT-HHHHHHHHHHHHHHSTTSHH
T ss_pred             cccHHHHHHHHHHHHHHCCCCch
Confidence            58899999999999999998655

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.08  E-value=1.1  Score=52.37  Aligned_cols=254  Identities=12%  Similarity=0.020  Sum_probs=137.9

Q ss_pred             cCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc---cc---------------------
Q 001619          302 QGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLK---RL---------------------  357 (1043)
Q Consensus       302 ~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~---~~---------------------  357 (1043)
                      ..++..-+++=.+||..+|++.+.|+-.|...  ...+.+|..+|.+|++.-..   ..                     
T Consensus       181 ERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~  258 (539)
T PF04184_consen  181 ERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVL  258 (539)
T ss_pred             cCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchh
Confidence            46777778888899999999988888777643  45688899999998875211   00                     


Q ss_pred             chHHHHHHHHHHHhCCHHHHHHHHHhhhhCCCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHH
Q 001619          358 PVIHLFNARYKEQIGDTSAARAAFPESYIDSDS-RFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLY  436 (1043)
Q Consensus       358 p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~-~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~  436 (1043)
                      .-+--..|....+.|..++|.+.|+..+++.+. +...+....+......+.+..+.+++.|.=+.     ..|....+.
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi-----~lpkSAti~  333 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI-----SLPKSATIC  333 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc-----cCCchHHHH
Confidence            011123466677899999999999999875433 33445555555555667888888888774221     012211111


Q ss_pred             HHHHHHHHHHH-----HHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001619          437 VQFSRLTYTEL-----IKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWN  511 (1043)
Q Consensus       437 ~~~ar~~~~~~-----~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~  511 (1043)
                      -.-|.+.+...     .+...+.|-....-.|.+.+.||++.||-....|...++-.   +=-+.....|+.+.+.-+. 
T Consensus       334 YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~Li---lPPehilkrGDSEAiaYAf-  409 (539)
T PF04184_consen  334 YTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLI---LPPEHILKRGDSEAIAYAF-  409 (539)
T ss_pred             HHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCC---CChHHhcCCCcHHHHHHHH-
Confidence            00122222111     11112223222223577889999998886533331111100   0011222346644333322 


Q ss_pred             HHHhhCCCCccccccCccchhhhHHHhhhhhhhhhhhcCCcccccccccccccccccCCCCCcCCCccCCCCCCCCCC
Q 001619          512 QHIKLFPHTVRTAYECPGRETKSLRAFIRGKRESNVASLPQPFESEHLMPSASQDKKFSPPEKSDSESGDDATSLPSN  589 (1043)
Q Consensus       512 ra~k~~p~~~~~~~~~~~~k~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  589 (1043)
                      -++..-..            ..-+.++++|.-+..+-.+|          +..|+.-|=.+|.+|.+..| |--||.-
T Consensus       410 ~hL~hWk~------------veGAL~lL~~tweg~~r~ip----------~~le~g~~f~p~p~~~e~ad-rellp~~  464 (539)
T PF04184_consen  410 FHLQHWKR------------VEGALNLLHCTWEGTFRMIP----------YPLEKGHLFYPYPSCTECAD-RELLPAF  464 (539)
T ss_pred             HHHHHHhc------------CHhHHHHHHHHhcCCcccCC----------CccccCCccCcCCcchhhcc-ccccccc
Confidence            22222111            11155557777776666666          33344334468888887665 3334443

The molecular function of this protein is uncertain.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=95.04  E-value=8.2  Score=43.93  Aligned_cols=292  Identities=11%  Similarity=0.019  Sum_probs=165.4

Q ss_pred             CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHH
Q 001619           53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHK--ARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRL  130 (1043)
Q Consensus        53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e--~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~l  130 (1043)
                      ||-..+|+.-.+.-+.....-.-.+.+++--  +-.|+++.|++-||--+.+ |.+-.+=+.-+-++-...|+.+.+|..
T Consensus        98 Gda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr~y  176 (531)
T COG3898          98 GDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAARHY  176 (531)
T ss_pred             CchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHHHH
Confidence            5666777777777766655555555555432  2237888888888877765 655444333332333333777888888


Q ss_pred             HHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001619          131 FKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSE  210 (1043)
Q Consensus       131 ferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e  210 (1043)
                      -++|-...|.-   .=-|...++-....|+++.+.++.........  +..-..+..               .++-....
T Consensus       177 Ae~Aa~~Ap~l---~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v--ie~~~aeR~---------------rAvLLtAk  236 (531)
T COG3898         177 AERAAEKAPQL---PWAARATLEARCAAGDWDGALKLVDAQRAAKV--IEKDVAERS---------------RAVLLTAK  236 (531)
T ss_pred             HHHHHhhccCC---chHHHHHHHHHHhcCChHHHHHHHHHHHHHHh--hchhhHHHH---------------HHHHHHHH
Confidence            88887776652   12334444433456778888777665432100  000000000               00000000


Q ss_pred             hhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHH
Q 001619          211 LVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLK  290 (1043)
Q Consensus       211 ~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~  290 (1043)
                      ...  .    . +-|              -..+++.             +          -.+++        +.|.-+-
T Consensus       237 A~s--~----l-dad--------------p~~Ar~~-------------A----------~~a~K--------L~pdlvP  264 (531)
T COG3898         237 AMS--L----L-DAD--------------PASARDD-------------A----------LEANK--------LAPDLVP  264 (531)
T ss_pred             HHH--H----h-cCC--------------hHHHHHH-------------H----------HHHhh--------cCCccch
Confidence            000  0    0 000              0000000             0          00111        2233232


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Q 001619          291 NWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQ  370 (1043)
Q Consensus       291 ~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~  370 (1043)
                      .=...+..+.+.|+..+.-.++|.+-+..| ++.||..|...  +.||--..|.-=-+.+....+++.+-.+.-++--..
T Consensus       265 aav~AAralf~d~~~rKg~~ilE~aWK~eP-HP~ia~lY~~a--r~gdta~dRlkRa~~L~slk~nnaes~~~va~aAld  341 (531)
T COG3898         265 AAVVAARALFRDGNLRKGSKILETAWKAEP-HPDIALLYVRA--RSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALD  341 (531)
T ss_pred             HHHHHHHHHHhccchhhhhhHHHHHHhcCC-ChHHHHHHHHh--cCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHh
Confidence            333334445557888999999999999877 46899998765  456644444332233333345666667777777788


Q ss_pred             hCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Q 001619          371 IGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRL-GNFVAACDTYKEALET  422 (1043)
Q Consensus       371 ~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~-G~~e~Ar~lyekale~  422 (1043)
                      .|++..||.--+-+... .|. ..++...+++|+-. |+-.++|..+-+++..
T Consensus       342 a~e~~~ARa~Aeaa~r~-~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         342 AGEFSAARAKAEAAARE-APR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             ccchHHHHHHHHHHhhh-Cch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            99999999887766643 333 55788889999876 9999999999999984

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=94.97  E-value=0.076  Score=46.50  Aligned_cols=64  Identities=17%  Similarity=0.169  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHhcc---CC----CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001619          289 LKNWHDYLSFAEKQGDFDWVVKLYERCLIP---CA----DYPEFWMRYVDFMESKGGREIASYALDRATQI  352 (1043)
Q Consensus       289 ~~~W~~yi~~e~~~g~~e~~~~lyerAl~~---~~----~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~  352 (1043)
                      ...+..++..+...|++++++..|++|+..   .+    ....++...+..+...|++++|...|++|+++
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            344455555555566666666666666632   11    12344555555555556666666666655554

...

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.91  E-value=1.5  Score=49.16  Aligned_cols=133  Identities=14%  Similarity=0.030  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCc--HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHH
Q 001619          288 QLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADY--PEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNA  365 (1043)
Q Consensus       288 ~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~--~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A  365 (1043)
                      +.+.-.-.+..+.+.++++.|.+.|+++-....+.  ..|...|+.+....+++.+|..+|+..... .+..+.+....|
T Consensus       130 ~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A  208 (290)
T PF04733_consen  130 SLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLA  208 (290)
T ss_dssp             CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHH
T ss_pred             cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHH
Confidence            34444445666667888999999998887665443  234445555544444688999999886655 334566777778


Q ss_pred             HHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHH
Q 001619          366 RYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNF-VAACDTYKEALET  422 (1043)
Q Consensus       366 ~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~-e~Ar~lyekale~  422 (1043)
                      -.....|++++|.+++..++.. .++....+...+.+..-.|+. +.+.+.+......
T Consensus       209 ~~~l~~~~~~eAe~~L~~al~~-~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~  265 (290)
T PF04733_consen  209 VCHLQLGHYEEAEELLEEALEK-DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS  265 (290)
T ss_dssp             HHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence            8888899999999999998853 455667777777777777876 5566666554443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=94.89  E-value=0.83  Score=52.10  Aligned_cols=101  Identities=13%  Similarity=0.033  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHH
Q 001619          360 IHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQF  439 (1043)
Q Consensus       360 iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~  439 (1043)
                      +++..|-...+.+.+..|...-.+++. ..+++++..++.......+|+++.||..|.++++.      .|.+-.+-   
T Consensus       259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe-~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~------~P~Nka~~---  328 (397)
T KOG0543|consen  259 CHLNLAACYLKLKEYKEAIESCNKVLE-LDPNNVKALYRRGQALLALGEYDLARDDFQKALKL------EPSNKAAR---  328 (397)
T ss_pred             HhhHHHHHHHhhhhHHHHHHHHHHHHh-cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh------CCCcHHHH---
Confidence            677777888899999999999999985 46667887777777778889999999999999998      66553222   


Q ss_pred             HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCc
Q 001619          440 SRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDV  477 (1043)
Q Consensus       440 ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~  477 (1043)
                        .+...+..=++.     ..++-+.+|.+++.+++..
T Consensus       329 --~el~~l~~k~~~-----~~~kekk~y~~mF~k~~~~  359 (397)
T KOG0543|consen  329 --AELIKLKQKIRE-----YEEKEKKMYANMFAKLAEE  359 (397)
T ss_pred             --HHHHHHHHHHHH-----HHHHHHHHHHHHhhccccc
Confidence              222111111111     1235677888888766543

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=94.87  E-value=0.39  Score=46.12  Aligned_cols=52  Identities=19%  Similarity=0.319  Sum_probs=48.4

Q ss_pred             HcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001619          301 KQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQI  352 (1043)
Q Consensus       301 ~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~  352 (1043)
                      ..|+.+.++..|.+||..+|.....+.+.|.-+...|+.++|..-+++|+++
T Consensus        55 E~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL  106 (175)
T KOG4555|consen   55 EAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL  106 (175)
T ss_pred             hccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence            3789999999999999999999999999999999999999999999999876

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.79  E-value=0.41  Score=51.98  Aligned_cols=98  Identities=11%  Similarity=0.197  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHH
Q 001619           38 DEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCY-----GYWRKYADHKARLCSIDKVVEVFERAVQSATYS---VDV  109 (1043)
Q Consensus        38 ~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~-----~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s---~~L  109 (1043)
                      +.+..+++++..   +++..+...|..+++.+|.+.     .+|  +.+.....|++++|..+|.+++...|.+   ++-
T Consensus       143 ~~Y~~A~~~~ks---gdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApda  217 (262)
T COG1729         143 KLYNAALDLYKS---GDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDA  217 (262)
T ss_pred             HHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHH
Confidence            377777887765   689999999999999999975     567  4566667789999999999999987665   566


Q ss_pred             HHHHHHHHHhhCCChHHHHHHHHHHHHhcCCC
Q 001619          110 WFHYCSLSMSTFEDPNDVRRLFKRALSFVGKD  141 (1043)
Q Consensus       110 Wl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~  141 (1043)
                      .++.+..+.+. ++.+.|+++|+..++.-|..
T Consensus       218 llKlg~~~~~l-~~~d~A~atl~qv~k~YP~t  248 (262)
T COG1729         218 LLKLGVSLGRL-GNTDEACATLQQVIKRYPGT  248 (262)
T ss_pred             HHHHHHHHHHh-cCHHHHHHHHHHHHHHCCCC
Confidence            77777776666 88899999999998887763

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.75  E-value=17  Score=46.09  Aligned_cols=107  Identities=9%  Similarity=-0.056  Sum_probs=52.6

Q ss_pred             HcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHH
Q 001619          301 KQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAA  380 (1043)
Q Consensus       301 ~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~l  380 (1043)
                      ..|.++.|+-+|..        ..-|.+.|..+...|++..|...-.+|-      +...|-.-..-....+.|.-|   
T Consensus      1206 ~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFrlA--- 1268 (1666)
T KOG0985|consen 1206 EEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEEFRLA--- 1268 (1666)
T ss_pred             hhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhhhhHH---
Confidence            35556666666632        3457777776666666555544333332      334554432222222222111   


Q ss_pred             HHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 001619          381 FPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQ  426 (1043)
Q Consensus       381 l~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~  426 (1043)
                        ..+....--.++-.-..+.+....|-|++...+++-++.+..+.
T Consensus      1269 --QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAH 1312 (1666)
T KOG0985|consen 1269 --QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAH 1312 (1666)
T ss_pred             --HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHH
Confidence              11111000112223334455566688888888888888775543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=94.73  E-value=0.11  Score=45.56  Aligned_cols=62  Identities=18%  Similarity=0.165  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHhhhhC---C---ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619          361 HLFNARYKEQIGDTSAARAAFPESYID---S---DSRFIEKVTFKANMERRLGNFVAACDTYKEALET  422 (1043)
Q Consensus       361 wl~~A~~E~~~g~~d~Ar~ll~ral~~---~---~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~  422 (1043)
                      +...+.+..+.|++++|...|++++..   .   .+..+..+...+.+....|++++|.+.|+++++.
T Consensus         8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            333444444555555555555555431   0   0122445566667777778888888888887775

...

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=94.65  E-value=0.03  Score=41.02  Aligned_cols=33  Identities=15%  Similarity=0.221  Sum_probs=28.8

Q ss_pred             HHHHHhccCCCcHHHHHHHHHHHHHcCChHHHH
Q 001619          311 LYERCLIPCADYPEFWMRYVDFMESKGGREIAS  343 (1043)
Q Consensus       311 lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar  343 (1043)
                      +|+|||...|+....|..++.++...|+.++|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            478899989999999999999998889888876

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.62  E-value=0.73  Score=51.18  Aligned_cols=134  Identities=15%  Similarity=0.062  Sum_probs=84.0

Q ss_pred             hHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc----------
Q 001619          286 DIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLK----------  355 (1043)
Q Consensus       286 p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~----------  355 (1043)
                      ..++++|+.+..|-  .|++++|..+|+-+.....-..+||+..|-.+--.|.+.+|..+-++|-+..+.          
T Consensus        56 E~~~~lWia~C~fh--LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahk  133 (557)
T KOG3785|consen   56 EDSLQLWIAHCYFH--LGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHK  133 (557)
T ss_pred             hHHHHHHHHHHHHh--hccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Confidence            45789999999887  799999999999998755455688888876555568888888888776442110          


Q ss_pred             -ccchHHH--------------HHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001619          356 -RLPVIHL--------------FNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEAL  420 (1043)
Q Consensus       356 -~~p~iwl--------------~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekal  420 (1043)
                       +.++-|+              ..|.+......+.+|.++|++.+.. .+.++.+-...+-...++.-++-+.++++-.+
T Consensus       134 lndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d-n~ey~alNVy~ALCyyKlDYydvsqevl~vYL  212 (557)
T KOG3785|consen  134 LNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD-NPEYIALNVYMALCYYKLDYYDVSQEVLKVYL  212 (557)
T ss_pred             hCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence             1111122              1222333334567788888887743 44443322222223345556666677666666


Q ss_pred             HH
Q 001619          421 ET  422 (1043)
Q Consensus       421 e~  422 (1043)
                      ..
T Consensus       213 ~q  214 (557)
T KOG3785|consen  213 RQ  214 (557)
T ss_pred             Hh
Confidence            65

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=94.58  E-value=4.8  Score=43.90  Aligned_cols=129  Identities=15%  Similarity=0.139  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhccCCCcH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccch---HHH
Q 001619          291 NWHDYLSFAEKQGDFDWVVKLYERCLIPCADYP-----EFWMRYVDFMESKGGREIASYALDRATQIFLKRLPV---IHL  362 (1043)
Q Consensus       291 ~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~-----~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~---iwl  362 (1043)
                      .+...+.-....|+++.|+..|++++...|...     .+|+.++.|  +.++++.|+..|++.++. .|+.|.   ++.
T Consensus        34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy--~~~~y~~A~~~~e~fi~~-~P~~~~~~~a~Y  110 (243)
T PRK10866         34 EIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYY--KNADLPLAQAAIDRFIRL-NPTHPNIDYVLY  110 (243)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHh-CcCCCchHHHHH
Confidence            343344444458999999999999998766543     356666655  568999999999999988 444443   333


Q ss_pred             HHHHHHHHh---------------CC---HHHHHHHHHhhhhCCC-hhh---------------HHHHHHHHHHHHHcCC
Q 001619          363 FNARYKEQI---------------GD---TSAARAAFPESYIDSD-SRF---------------IEKVTFKANMERRLGN  408 (1043)
Q Consensus       363 ~~A~~E~~~---------------g~---~d~Ar~ll~ral~~~~-~~~---------------~~lw~~~a~lE~~~G~  408 (1043)
                      .-+......               .+   ...|...|++.+...+ ..+               .+--+.-++|-.+.|.
T Consensus       111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~  190 (243)
T PRK10866        111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGA  190 (243)
T ss_pred             HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            333221111               12   2345577777775422 111               0111112344555677


Q ss_pred             HHHHHHHHHHHHHH
Q 001619          409 FVAACDTYKEALET  422 (1043)
Q Consensus       409 ~e~Ar~lyekale~  422 (1043)
                      +..|..-|+.+++.
T Consensus       191 y~AA~~r~~~v~~~  204 (243)
T PRK10866        191 YVAVVNRVEQMLRD  204 (243)
T ss_pred             hHHHHHHHHHHHHH
Confidence            77777777777775

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.49  E-value=5.5  Score=43.22  Aligned_cols=200  Identities=13%  Similarity=0.057  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHHHHHcCCh-HHHHHHHHHHhccCCCcHHHHHHHH-HHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHH
Q 001619          288 QLKNWHDYLSFAEKQGDF-DWVVKLYERCLIPCADYPEFWMRYV-DFMESKGGREIASYALDRATQIFLKRLPVIHLFNA  365 (1043)
Q Consensus       288 ~~~~W~~yi~~e~~~g~~-e~~~~lyerAl~~~~~~~~LWl~yA-k~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A  365 (1043)
                      .....+.++.++...+.. +.+-.++|...........+|.-.+ .++...|++++|...+.+...+      ++...-+
T Consensus        71 ~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l------E~~Al~V  144 (299)
T KOG3081|consen   71 PLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL------EAAALNV  144 (299)
T ss_pred             hHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH------HHHHHHH
Confidence            445556666666544543 4556677777777777776666554 5667788999999888874332      3555566


Q ss_pred             HHHHHhCCHHHHHHHHHhhhhCCChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHH
Q 001619          366 RYKEQIGDTSAARAAFPESYIDSDSR-FIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTY  444 (1043)
Q Consensus       366 ~~E~~~g~~d~Ar~ll~ral~~~~~~-~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~  444 (1043)
                      .+..+...+|-|++.++++....... ...+-..|+.|----+.+..|.-+|+..-+.      ++-+|.+.+-.     
T Consensus       145 qI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k------~~~T~~llnG~-----  213 (299)
T KOG3081|consen  145 QILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK------TPPTPLLLNGQ-----  213 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc------cCCChHHHccH-----
Confidence            77788899999999999987532221 1124445555555555689999999988885      33234322111     


Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001619          445 TELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFP  518 (1043)
Q Consensus       445 ~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~~p  518 (1043)
                            ..-+-...+.+.|.++++.||.+.++.        ++++.++-+-....-.+.+...+........-|
T Consensus       214 ------Av~~l~~~~~eeAe~lL~eaL~kd~~d--------petL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p  273 (299)
T KOG3081|consen  214 ------AVCHLQLGRYEEAESLLEEALDKDAKD--------PETLANLIVLALHLGKDAEVTERNLSQLKLSHP  273 (299)
T ss_pred             ------HHHHHHhcCHHHHHHHHHHHHhccCCC--------HHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Confidence                  111101123678999999999987664        455555444443333444444444444333333

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=94.37  E-value=3.3  Score=42.48  Aligned_cols=136  Identities=16%  Similarity=0.092  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCC-hhhHHHHHHHHHHHH
Q 001619          326 WMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSD-SRFIEKVTFKANMER  404 (1043)
Q Consensus       326 Wl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~-~~~~~lw~~~a~lE~  404 (1043)
                      -++.+.-+...|+..+|+..|+.++.-.....+.+.+..|.-....+++..|...+++..+.+. ..+..-.+.|+....
T Consensus        92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la  171 (251)
T COG4700          92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA  171 (251)
T ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH
Confidence            4566777778899999999999998866667888888888888889999999999998875321 122333456667777


Q ss_pred             HcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHhhcCCC
Q 001619          405 RLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGR-SHISIVDAVISNALYSRPD  476 (1043)
Q Consensus       405 ~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~-~~leraR~l~erAl~~~p~  476 (1043)
                      -.|....|+..|+-+++.      +|+..      ++   ..|..|+.+.|.. ..-.++++|++++....|-
T Consensus       172 a~g~~a~Aesafe~a~~~------ypg~~------ar---~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~H  229 (251)
T COG4700         172 AQGKYADAESAFEVAISY------YPGPQ------AR---IYYAEMLAKQGRLREANAQYVAVVDTAKRSRPH  229 (251)
T ss_pred             hcCCchhHHHHHHHHHHh------CCCHH------HH---HHHHHHHHHhcchhHHHHHHHHHHHHHHhcchh
Confidence            789999999999999997      55422      22   2345555566632 2235788999998876554

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=94.00  E-value=0.29  Score=49.95  Aligned_cols=28  Identities=14%  Similarity=0.247  Sum_probs=13.5

Q ss_pred             hHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 001619          124 PNDVRRLFKRALSFVGKDYLCHTMWDKYIEFE  155 (1043)
Q Consensus       124 ~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe  155 (1043)
                      +++|..-|++|+..-|    +..++...+++.
T Consensus        96 F~kA~~~FqkAv~~~P----~ne~Y~ksLe~~  123 (186)
T PF06552_consen   96 FEKATEYFQKAVDEDP----NNELYRKSLEMA  123 (186)
T ss_dssp             HHHHHHHHHHHHHH-T----T-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCC----CcHHHHHHHHHH
Confidence            3445555666665544    234455555544

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=93.90  E-value=8  Score=39.02  Aligned_cols=120  Identities=19%  Similarity=0.194  Sum_probs=75.7

Q ss_pred             HHcCChHHHHHHHHHHhccCC---CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHhCCHH
Q 001619          300 EKQGDFDWVVKLYERCLIPCA---DYPEFWMRYVDFMESKGGREIASYALDRATQIFLKR-LPVIHLFNARYKEQIGDTS  375 (1043)
Q Consensus       300 ~~~g~~e~~~~lyerAl~~~~---~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~-~p~iwl~~A~~E~~~g~~d  375 (1043)
                      ...|+++.+...|++++...+   .....+......+...++.+.|...+.+++.. .+. ....+...+......+.++
T Consensus       141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  219 (291)
T COG0457         141 YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL-NPDDDAEALLNLGLLYLKLGKYE  219 (291)
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh-CcccchHHHHHhhHHHHHcccHH
Confidence            345667777777777766433   34444555555555667788888888887776 333 3456667777777777888


Q ss_pred             HHHHHHHhhhhCCChhhHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619          376 AARAAFPESYIDSDSRFIEKVT-FKANMERRLGNFVAACDTYKEALET  422 (1043)
Q Consensus       376 ~Ar~ll~ral~~~~~~~~~lw~-~~a~lE~~~G~~e~Ar~lyekale~  422 (1043)
                      .|...+.+++... +.....+. ....+. ..|.++.+...+.+++..
T Consensus       220 ~a~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         220 EALEYYEKALELD-PDNAEALYNLALLLL-ELGRYEEALEALEKALEL  265 (291)
T ss_pred             HHHHHHHHHHhhC-cccHHHHhhHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence            8888888887532 22222222 223333 567788888888888876

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=93.70  E-value=0.094  Score=38.38  Aligned_cols=32  Identities=9%  Similarity=0.094  Sum_probs=22.0

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 001619           62 YDSFLAEFPLCYGYWRKYADHKARLCSIDKVV   93 (1043)
Q Consensus        62 yeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~   93 (1043)
                      |+|+|+.+|.++..|..++.+....|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            56677777777777777777666666666654

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=93.64  E-value=0.89  Score=43.76  Aligned_cols=88  Identities=16%  Similarity=0.048  Sum_probs=73.9

Q ss_pred             HHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCCh---hhHHHHHHHHHHHHHcCCHH
Q 001619          334 ESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDS---RFIEKVTFKANMERRLGNFV  410 (1043)
Q Consensus       334 e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~---~~~~lw~~~a~lE~~~G~~e  410 (1043)
                      ...|+++.|.+.|.+|+.+ .|..+..+-..|.-..-.|+.++|.+=+.+|++...+   +....+...+.+.+..|+.+
T Consensus        54 aE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd  132 (175)
T KOG4555|consen   54 AEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD  132 (175)
T ss_pred             HhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence            4568999999999999987 6677778888888888899999999999999874322   22346778888999999999


Q ss_pred             HHHHHHHHHHHH
Q 001619          411 AACDTYKEALET  422 (1043)
Q Consensus       411 ~Ar~lyekale~  422 (1043)
                      .||.-|+.|-++
T Consensus       133 ~AR~DFe~AA~L  144 (175)
T KOG4555|consen  133 AARADFEAAAQL  144 (175)
T ss_pred             HHHHhHHHHHHh
Confidence            999999999887

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=93.54  E-value=1.2  Score=46.10  Aligned_cols=86  Identities=14%  Similarity=0.096  Sum_probs=55.3

Q ss_pred             HHcCChHHHHHHHHHHhccCCCcH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCH
Q 001619          300 EKQGDFDWVVKLYERCLIPCADYP-----EFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDT  374 (1043)
Q Consensus       300 ~~~g~~e~~~~lyerAl~~~~~~~-----~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~  374 (1043)
                      ..+|+++.|...|.+||..||...     .|+...|-.+.+.+..+.|..--.+|+.+ .|.+.......|+.++....+
T Consensus       106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel-~pty~kAl~RRAeayek~ek~  184 (271)
T KOG4234|consen  106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL-NPTYEKALERRAEAYEKMEKY  184 (271)
T ss_pred             hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc-CchhHHHHHHHHHHHHhhhhH
Confidence            347889999999999998887653     44555555555556666666666666655 333334444556666666667


Q ss_pred             HHHHHHHHhhhh
Q 001619          375 SAARAAFPESYI  386 (1043)
Q Consensus       375 d~Ar~ll~ral~  386 (1043)
                      +.|..=|++.+.
T Consensus       185 eealeDyKki~E  196 (271)
T KOG4234|consen  185 EEALEDYKKILE  196 (271)
T ss_pred             HHHHHHHHHHHH
Confidence            777766666664

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=93.52  E-value=0.61  Score=48.08  Aligned_cols=87  Identities=14%  Similarity=0.133  Sum_probs=72.2

Q ss_pred             HHcCChHHHHHHHHHHHHHHhcccc-----hHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCC
Q 001619          334 ESKGGREIASYALDRATQIFLKRLP-----VIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGN  408 (1043)
Q Consensus       334 e~~g~~e~Ar~ilerA~~~~~~~~p-----~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~  408 (1043)
                      -.+|++++|...|.+|+.. +|.++     -++...|-...+++..+.|.+-..+|+. ..|++.+...+.|.+.+++..
T Consensus       106 F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie-l~pty~kAl~RRAeayek~ek  183 (271)
T KOG4234|consen  106 FKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE-LNPTYEKALERRAEAYEKMEK  183 (271)
T ss_pred             hhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh-cCchhHHHHHHHHHHHHhhhh
Confidence            4579999999999999988 44333     2455566677888999999999999995 578888888888889888899


Q ss_pred             HHHHHHHHHHHHHH
Q 001619          409 FVAACDTYKEALET  422 (1043)
Q Consensus       409 ~e~Ar~lyekale~  422 (1043)
                      ++.|..-|++.++.
T Consensus       184 ~eealeDyKki~E~  197 (271)
T KOG4234|consen  184 YEEALEDYKKILES  197 (271)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999997

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=93.51  E-value=0.7  Score=48.99  Aligned_cols=98  Identities=14%  Similarity=0.140  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHH
Q 001619           55 IEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRA  134 (1043)
Q Consensus        55 ~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferA  134 (1043)
                      +..+...|-|++..+|+...+|.+-+....+..+++.+..-..||+.++|+++.--.......+.. ..++.+..++.||
T Consensus        26 y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s-~~~~eaI~~Lqra  104 (284)
T KOG4642|consen   26 YDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQS-KGYDEAIKVLQRA  104 (284)
T ss_pred             hchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhh-ccccHHHHHHHHH
Confidence            344555899999999999999999998888888999999999999999999998777777766666 6788999999999


Q ss_pred             HHhc---CCCCCcHHHHHHHHHH
Q 001619          135 LSFV---GKDYLCHTMWDKYIEF  154 (1043)
Q Consensus       135 L~~l---p~~~~s~~IW~~yi~f  154 (1043)
                      ....   +..+ ...||.+..+-
T Consensus       105 ~sl~r~~~~~~-~~di~~~L~~a  126 (284)
T KOG4642|consen  105 YSLLREQPFTF-GDDIPKALRDA  126 (284)
T ss_pred             HHHHhcCCCCC-cchHHHHHHHH
Confidence            6544   3333 56888876653

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=93.46  E-value=4.7  Score=39.82  Aligned_cols=107  Identities=18%  Similarity=0.082  Sum_probs=73.2

Q ss_pred             HHcCChHHHHHHHHHHhccC-----CCcH-HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCC
Q 001619          300 EKQGDFDWVVKLYERCLIPC-----ADYP-EFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGD  373 (1043)
Q Consensus       300 ~~~g~~e~~~~lyerAl~~~-----~~~~-~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~  373 (1043)
                      ...++.+.....|++|+...     +... .-|+.-.            |.-|.+...       .+....+......|+
T Consensus        17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~------------r~~l~~~~~-------~~~~~l~~~~~~~~~   77 (146)
T PF03704_consen   17 ARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPE------------RERLRELYL-------DALERLAEALLEAGD   77 (146)
T ss_dssp             HHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHH------------HHHHHHHHH-------HHHHHHHHHHHHTT-
T ss_pred             HHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHH------------HHHHHHHHH-------HHHHHHHHHHHhccC
Confidence            34678888999999999742     1111 1343332            222322221       255566778889999


Q ss_pred             HHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 001619          374 TSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQ  426 (1043)
Q Consensus       374 ~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~  426 (1043)
                      +++|..++.+++.. .|-...+|...+......|+...|.++|++....+...
T Consensus        78 ~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~e  129 (146)
T PF03704_consen   78 YEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREE  129 (146)
T ss_dssp             HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence            99999999999964 55567899999999999999999999999998876543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=93.30  E-value=0.6  Score=47.65  Aligned_cols=82  Identities=17%  Similarity=0.192  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhh---C
Q 001619           55 IEMIGLVYDSFLAEFPLCYGYWRKYADHKARLC----------SIDKVVEVFERAVQSATYSVDVWFHYCSLSMST---F  121 (1043)
Q Consensus        55 ~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~----------~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~---~  121 (1043)
                      ++.+|+.++.....+|.+.+.+.+|.-...++.          -+++|..-|+.||..+|+..+....+..-+...   .
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            566888899999999999998888887554432          256788888889999888776544444443322   1


Q ss_pred             CChHHHHHHHHHHHH
Q 001619          122 EDPNDVRRLFKRALS  136 (1043)
Q Consensus       122 ~~~e~ar~lferAL~  136 (1043)
                      .+..++...|++|..
T Consensus        87 ~d~~~A~~~F~kA~~  101 (186)
T PF06552_consen   87 PDTAEAEEYFEKATE  101 (186)
T ss_dssp             --HHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHH
Confidence            344556666666654

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=93.27  E-value=26  Score=44.12  Aligned_cols=56  Identities=13%  Similarity=0.043  Sum_probs=26.9

Q ss_pred             HHHHhCCHHHHHHHHHhhhhCCCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619          367 YKEQIGDTSAARAAFPESYIDSDS-RFIEKVTFKANMERRLGNFVAACDTYKEALET  422 (1043)
Q Consensus       367 ~E~~~g~~d~Ar~ll~ral~~~~~-~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~  422 (1043)
                      ..+..|.+++|..++..-+.+..+ ....+-.+-.+|...++.+.+..++-.++++.
T Consensus       199 iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k  255 (932)
T KOG2053|consen  199 ILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK  255 (932)
T ss_pred             HHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence            334556666666666433322111 11112223445555556666666666555554

>KOG1972 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.18  E-value=15  Score=45.62  Aligned_cols=135  Identities=13%  Similarity=0.036  Sum_probs=73.1

Q ss_pred             CChHHHHHHHHHHHHHHHc--------CChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc
Q 001619          284 LDDIQLKNWHDYLSFAEKQ--------GDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLK  355 (1043)
Q Consensus       284 ~~p~~~~~W~~yi~~e~~~--------g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~  355 (1043)
                      .++.+-..|..|......+        ++...++ .++..|...+....+|..||.++...-.  +-|.-+- +++....
T Consensus       717 ~s~~~~~~y~~ycqiq~~~~~~S~l~f~~~~k~r-F~e~~v~~fsrn~~~~e~wa~l~s~l~q--k~r~rl~-~~k~~~~  792 (913)
T KOG1972|consen  717 LSLTEQSLYRSYCQIQIKHFWASNLAFYNLPKVR-FFEEGVTLFSRNAFGWELWAELESELRQ--KIRKRLS-STKNEVD  792 (913)
T ss_pred             cCchhHHHHHHHHHHHHHHHHhhhhhccccccee-eeccchhhccccchhHHHHHHHHHHHHH--HHHHHHH-HHhhhhc
Confidence            4456777888887433322        3445556 4555577777788888888887654311  1111110 1111110


Q ss_pred             -ccchHHHHHHHHHHHhCCHHHHHHH-H----HhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619          356 -RLPVIHLFNARYKEQIGDTSAARAA-F----PESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET  422 (1043)
Q Consensus       356 -~~p~iwl~~A~~E~~~g~~d~Ar~l-l----~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~  422 (1043)
                       ....+|-.|...+.....+..|... |    .+......+....+|..|+.+.-++++.+...++|.+|++.
T Consensus       793 ~~n~ai~~~~~i~e~~~~~i~~a~t~mf~n~~~si~d~~l~~~~~~WR~yl~~lskl~~~~~~~~~~tkA~~s  865 (913)
T KOG1972|consen  793 GRNAAIHAEQVIPETGDDQIMSANTGMFRNADRSILDEELPDENSKWRDYLEALSKLLNKERSKAASTKALDS  865 (913)
T ss_pred             chhhhhccccccccchHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHhhhhhhhHHHHHHHhhc
Confidence             1123444444333222222222222 2    12222223444568999999999999999999999999995

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=92.90  E-value=0.8  Score=52.25  Aligned_cols=94  Identities=10%  Similarity=0.152  Sum_probs=73.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Q 001619           78 KYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEIS  157 (1043)
Q Consensus        78 ~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~  157 (1043)
                      .++-...+.+.+..|.....++|+..|.++.--..-++.++.. ++++.||..|.+|++.-|.   +..|=..++.+-.+
T Consensus       262 NlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~-~e~~~A~~df~ka~k~~P~---Nka~~~el~~l~~k  337 (397)
T KOG0543|consen  262 NLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLAL-GEYDLARDDFQKALKLEPS---NKAARAELIKLKQK  337 (397)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhh-ccHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHH
Confidence            3344445666888999999999999999999888888887777 8999999999999998776   56777777877776


Q ss_pred             hhhh-hhHHHHHHHHhcCC
Q 001619          158 QQRW-SSLAQIFVQTLRFP  175 (1043)
Q Consensus       158 ~~~~-e~a~~iy~raL~~p  175 (1043)
                      .... ++-+++|.+++...
T Consensus       338 ~~~~~~kekk~y~~mF~k~  356 (397)
T KOG0543|consen  338 IREYEEKEKKMYANMFAKL  356 (397)
T ss_pred             HHHHHHHHHHHHHHHhhcc
Confidence            6554 45588999998643

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=92.16  E-value=3.7  Score=40.65  Aligned_cols=62  Identities=13%  Similarity=0.029  Sum_probs=46.3

Q ss_pred             hHHHHHHHHHHHhCCHHHHHHHHHhhhhCCC----hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619          359 VIHLFNARYKEQIGDTSAARAAFPESYIDSD----SRFIEKVTFKANMERRLGNFVAACDTYKEALET  422 (1043)
Q Consensus       359 ~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~----~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~  422 (1043)
                      .-+..-|.-..+.|++++|++.|+......+    ...+.+++.|+-+..  |+++.|+..|++-|++
T Consensus        11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~--~~y~~A~a~~~rFirL   76 (142)
T PF13512_consen   11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQ--GDYEEAIAAYDRFIRL   76 (142)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHh
Confidence            3444555666789999999999998865322    234667887776654  8999999999999998

>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=92.12  E-value=81  Score=45.78  Aligned_cols=72  Identities=19%  Similarity=0.381  Sum_probs=48.1

Q ss_pred             HHhCCCCHHHHHHHHHHHHhcC-----------CCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--------HHcCCHH
Q 001619           30 IAEGSLDFDEWTSLLSEIENSC-----------PDDIEMIGLVYDSFLAEFPLCYGYWRKYADHK--------ARLCSID   90 (1043)
Q Consensus        30 i~~nP~d~~~W~~~i~~le~~~-----------~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e--------~~~~~~e   90 (1043)
                      |+.--....+|...|..++..-           ....+.+-++|...-+.. .-+.+|++-+.+-        ...|.++
T Consensus      2421 i~yl~kt~~~wh~~I~lLE~~~~~~~~~~~~~~~~~~dsl~elY~~L~E~D-m~~Glwrrr~~~~eT~~a~s~eQ~G~~e 2499 (3550)
T KOG0889|consen 2421 IKYLGKTYNLWHTSIRLLEDHQSNKEMENTKGDESCLDSLAELYRSLNEED-MFYGLWRRRAKFPETMVALSYEQLGFWE 2499 (3550)
T ss_pred             HHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhHHH-HHHHHHHHhhccHHHHHHHHHHHhhhHH
Confidence            3344457788999888777520           012234455666655554 4588999887653        3458999


Q ss_pred             HHHHHHHHHHHh
Q 001619           91 KVVEVFERAVQS  102 (1043)
Q Consensus        91 ~a~~lfeRAL~~  102 (1043)
                      +|-.+||+|-..
T Consensus      2500 ~AQ~lyekaq~K 2511 (3550)
T KOG0889|consen 2500 EAQSLYEKAQVK 2511 (3550)
T ss_pred             HHhhHHHHHHHH
Confidence            999999999865

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.48  E-value=22  Score=37.99  Aligned_cols=121  Identities=17%  Similarity=0.077  Sum_probs=72.0

Q ss_pred             cCChHHHHHHHHHHhccCC------CcHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHhcc-----cchHHHHHHHHHH
Q 001619          302 QGDFDWVVKLYERCLIPCA------DYPEFWMRYVDFMESK-GGREIASYALDRATQIFLKR-----LPVIHLFNARYKE  369 (1043)
Q Consensus       302 ~g~~e~~~~lyerAl~~~~------~~~~LWl~yAk~~e~~-g~~e~Ar~ilerA~~~~~~~-----~p~iwl~~A~~E~  369 (1043)
                      .++++++...+++|+...-      ......+..+.+||.. .+++.|...|+.|-..|-..     .-...+--|.+--
T Consensus        86 k~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa  165 (288)
T KOG1586|consen   86 KVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAA  165 (288)
T ss_pred             ccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHH
Confidence            4588888888888886422      2234455777777764 67888888888887754321     1135555667777


Q ss_pred             HhCCHHHHHHHHHhhhhCCChhh-----HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Q 001619          370 QIGDTSAARAAFPESYIDSDSRF-----IEKVTFKANMER-RLGNFVAACDTYKEALET  422 (1043)
Q Consensus       370 ~~g~~d~Ar~ll~ral~~~~~~~-----~~lw~~~a~lE~-~~G~~e~Ar~lyekale~  422 (1043)
                      ..+.+.+|.++|+..........     ++-+..-+-|-. ..++.-.++..+++..+.
T Consensus       166 ~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~  224 (288)
T KOG1586|consen  166 QLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL  224 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence            78888888888887654222111     111222222222 225556666666666665

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=91.33  E-value=22  Score=37.61  Aligned_cols=173  Identities=16%  Similarity=0.065  Sum_probs=90.1

Q ss_pred             CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHH
Q 001619          284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLF  363 (1043)
Q Consensus       284 ~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~  363 (1043)
                      +.|.-.+.+.-+.-++...|+++.+...|.-.+...|.+.-..++.+--+.-.|.+.-|..-|-.-... .|+.| ....
T Consensus        94 i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-D~~DP-fR~L  171 (297)
T COG4785          94 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-DPNDP-FRSL  171 (297)
T ss_pred             cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhc-CCCCh-HHHH
Confidence            456666666555556666778888888888887777766544444333222235555555444322222 33444 3333


Q ss_pred             HHHHHHHhCCHHHHHH-HHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHH
Q 001619          364 NARYKEQIGDTSAARA-AFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRL  442 (1043)
Q Consensus       364 ~A~~E~~~g~~d~Ar~-ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~  442 (1043)
                      |.-+-++.-+..+|+. +.+|+.+ ..   .+.|--+ -.+.-+|.+ +...+++++..-       ...-..+......
T Consensus       172 WLYl~E~k~dP~~A~tnL~qR~~~-~d---~e~WG~~-iV~~yLgki-S~e~l~~~~~a~-------a~~n~~~Ae~LTE  238 (297)
T COG4785         172 WLYLNEQKLDPKQAKTNLKQRAEK-SD---KEQWGWN-IVEFYLGKI-SEETLMERLKAD-------ATDNTSLAEHLTE  238 (297)
T ss_pred             HHHHHHhhCCHHHHHHHHHHHHHh-cc---HhhhhHH-HHHHHHhhc-cHHHHHHHHHhh-------ccchHHHHHHHHH
Confidence            3344455566777764 4456543 22   1233322 233444544 234556665553       1122333333333


Q ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHhhcC
Q 001619          443 TYTELIKFTMVHGGRSHISIVDAVISNALYSR  474 (1043)
Q Consensus       443 ~~~~~~~fe~~~g~~~~leraR~l~erAl~~~  474 (1043)
                      .|-.+.+.-...|.   ++.|.++|+-|+..+
T Consensus       239 tyFYL~K~~l~~G~---~~~A~~LfKLaiann  267 (297)
T COG4785         239 TYFYLGKYYLSLGD---LDEATALFKLAVANN  267 (297)
T ss_pred             HHHHHHHHHhcccc---HHHHHHHHHHHHHHh
Confidence            44444444444455   568999999998754

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=91.29  E-value=13  Score=39.19  Aligned_cols=194  Identities=13%  Similarity=0.104  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Q 001619          291 NWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQ  370 (1043)
Q Consensus       291 ~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~  370 (1043)
                      +-..+..++.+.|-..-||.-|..++...|+-++++.-..-|+...|+++.|-.+|+-.++. .|...-..+..+--..-
T Consensus        67 l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL-Dp~y~Ya~lNRgi~~YY  145 (297)
T COG4785          67 LLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-DPTYNYAHLNRGIALYY  145 (297)
T ss_pred             HHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc-CCcchHHHhccceeeee
Confidence            33344444445555677888899999999999999988888888899999999999887765 32221111111111112


Q ss_pred             hCCHHHHHHHHHhhhhC-CChhhHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHH
Q 001619          371 IGDTSAARAAFPESYID-SDSRFIEKVTFKANMERRLGNFVAAC-DTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELI  448 (1043)
Q Consensus       371 ~g~~d~Ar~ll~ral~~-~~~~~~~lw~~~a~lE~~~G~~e~Ar-~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~  448 (1043)
                      -|.+.-|..-|..--.. +...+-.+|+...  |.+ -+...|+ .+.+++...-.         .-|.-+       .+
T Consensus       146 ~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~--E~k-~dP~~A~tnL~qR~~~~d~---------e~WG~~-------iV  206 (297)
T COG4785         146 GGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN--EQK-LDPKQAKTNLKQRAEKSDK---------EQWGWN-------IV  206 (297)
T ss_pred             cCchHhhHHHHHHHHhcCCCChHHHHHHHHH--Hhh-CCHHHHHHHHHHHHHhccH---------hhhhHH-------HH
Confidence            45666665544443332 2222333566542  333 3555554 44466655411         122111       01


Q ss_pred             HHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHh
Q 001619          449 KFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDL---CGTIHDIRNAWNQHIK  515 (1043)
Q Consensus       449 ~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~---~G~~~~a~~~~~ra~k  515 (1043)
                      .|  -.|...    ...+++++....-++     ..-++.+.+.|.-+-+.   .|++++|..+++-|+.
T Consensus       207 ~~--yLgkiS----~e~l~~~~~a~a~~n-----~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia  265 (297)
T COG4785         207 EF--YLGKIS----EETLMERLKADATDN-----TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA  265 (297)
T ss_pred             HH--HHhhcc----HHHHHHHHHhhccch-----HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            11  012221    456777776543333     22345566666666654   4999999988876554

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=91.18  E-value=5.9  Score=39.23  Aligned_cols=54  Identities=9%  Similarity=0.125  Sum_probs=25.8

Q ss_pred             CcHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH
Q 001619           53 DDIEMIGLVYDSFLAEFPLCY-----GYWRKYADHKARLCSIDKVVEVFERAVQSATYSVD  108 (1043)
Q Consensus        53 ~~~~~~r~vyeraL~~~P~s~-----~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~  108 (1043)
                      ++...+.+.|+.+...+|.+.     .||+.|+-  .+.++++.|...++|.++.+|.++.
T Consensus        24 ~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yay--y~~~~y~~A~a~~~rFirLhP~hp~   82 (142)
T PF13512_consen   24 GNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAY--YKQGDYEEAIAAYDRFIRLHPTHPN   82 (142)
T ss_pred             CCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHH--HHccCHHHHHHHHHHHHHhCCCCCC
Confidence            455555555555555555432     33333332  2334455555555555555555544

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=91.06  E-value=7  Score=40.43  Aligned_cols=64  Identities=16%  Similarity=0.182  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHhccC---CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001619          289 LKNWHDYLSFAEKQGDFDWVVKLYERCLIPC---ADYPEFWMRYVDFMESKGGREIASYALDRATQI  352 (1043)
Q Consensus       289 ~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~---~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~  352 (1043)
                      ...|...++++.+.|+.+.|.+.|.++...|   .+..++|+..++.....||...+...+++|-..
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~  102 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL  102 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            3577788888888888888888888887655   344567777777777777877777777777665

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=90.99  E-value=1.1  Score=49.51  Aligned_cols=51  Identities=12%  Similarity=0.106  Sum_probs=35.6

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHH
Q 001619          293 HDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIAS  343 (1043)
Q Consensus       293 ~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar  343 (1043)
                      ....+-+.+.|.+++++..|.+++...|+.+.+..+.|.-|.+...+.-|.
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE  151 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAE  151 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHH
Confidence            444555556788888888888888888888888877777666554444333

>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus

Probab=90.64  E-value=1  Score=50.56  Aligned_cols=85  Identities=16%  Similarity=0.205  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCC--ChhhHHHHHHHH
Q 001619          323 PEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDS--DSRFIEKVTFKA  400 (1043)
Q Consensus       323 ~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~--~~~~~~lw~~~a  400 (1043)
                      ..||-.++..-+...-.+....+|..|+.+....||               -++.+.+|...+...  ..+++++|+-.|
T Consensus        83 ~sFw~tm~eEde~~~~t~kvn~tlsECl~Li~eGcp---------------~eei~~~L~~li~~IP~A~K~aKYWIC~A  147 (353)
T PF15297_consen   83 GSFWTTMAEEDEQRLFTEKVNKTLSECLNLIEEGCP---------------KEEILATLSDLIKNIPDAKKLAKYWICLA  147 (353)
T ss_pred             cccccchhhhhhHHHHHHHHHHHHHHHHHHHHcCCC---------------HHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence            467877766655444445666788888877666676               345556666666532  236788999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHH
Q 001619          401 NMERRLGNFVAACDTYKEALET  422 (1043)
Q Consensus       401 ~lE~~~G~~e~Ar~lyekale~  422 (1043)
                      .||.+.|.++.+..+|++||..
T Consensus       148 rl~~~~~~~e~vi~iyEeAi~a  169 (353)
T PF15297_consen  148 RLEPRTGPIEDVIAIYEEAILA  169 (353)
T ss_pred             HHHhhcCCHHHHHHHHHHHHHc
Confidence            9999999999999999999995

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.62  E-value=0.21  Score=55.41  Aligned_cols=120  Identities=13%  Similarity=0.072  Sum_probs=93.2

Q ss_pred             HcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHH
Q 001619          301 KQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAA  380 (1043)
Q Consensus       301 ~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~l  380 (1043)
                      ..|.++.++.+|.+||..+|....|+...+..+.+.++...|..-+.+|+.+ +++...=+-.-..-+...|+++.|+..
T Consensus       126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei-n~Dsa~~ykfrg~A~rllg~~e~aa~d  204 (377)
T KOG1308|consen  126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI-NPDSAKGYKFRGYAERLLGNWEEAAHD  204 (377)
T ss_pred             cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhcc-CcccccccchhhHHHHHhhchHHHHHH
Confidence            3678999999999999999999999999999888888999999999999987 655554333333445668999999999


Q ss_pred             HHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001619          381 FPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETA  423 (1043)
Q Consensus       381 l~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~  423 (1043)
                      |+.+++.....-..-|.+-  .+-+.+.++.-|..|+++.+..
T Consensus       205 l~~a~kld~dE~~~a~lKe--V~p~a~ki~e~~~k~er~~~e~  245 (377)
T KOG1308|consen  205 LALACKLDYDEANSATLKE--VFPNAGKIEEHRRKYERAREER  245 (377)
T ss_pred             HHHHHhccccHHHHHHHHH--hccchhhhhhchhHHHHHHHHh
Confidence            9999874333334456664  4555677888888888888764

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.06  E-value=0.78  Score=32.80  Aligned_cols=32  Identities=19%  Similarity=0.339  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 001619           74 GYWRKYADHKARLCSIDKVVEVFERAVQSATY  105 (1043)
Q Consensus        74 ~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~  105 (1043)
                      +.|..++......|++++|+..|++|+...|.
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            46777777777777888888888888877775

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.90  E-value=32  Score=37.12  Aligned_cols=89  Identities=12%  Similarity=0.186  Sum_probs=51.5

Q ss_pred             CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH------HHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHH
Q 001619           53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHK------ARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPND  126 (1043)
Q Consensus        53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e------~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~  126 (1043)
                      ..+++++..++++.+-+-.+-.+|...=..|      .+...+.+|..+|+||...          |+    ++ |..+.
T Consensus        45 k~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~l----------Y~----E~-Gspdt  109 (308)
T KOG1585|consen   45 KKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASEL----------YV----EC-GSPDT  109 (308)
T ss_pred             ccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----------HH----Hh-CCcch
Confidence            5667777777777766655555554332222      1122344555555555543          33    33 77777


Q ss_pred             HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcC
Q 001619          127 VRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRF  174 (1043)
Q Consensus       127 ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~  174 (1043)
                      |-..++||-+.+-                  ..+.+.|..+|.|++.+
T Consensus       110 AAmaleKAak~le------------------nv~Pd~AlqlYqralav  139 (308)
T KOG1585|consen  110 AAMALEKAAKALE------------------NVKPDDALQLYQRALAV  139 (308)
T ss_pred             HHHHHHHHHHHhh------------------cCCHHHHHHHHHHHHHH
Confidence            7777777766542                  22467788888888764

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=89.88  E-value=2.1  Score=47.56  Aligned_cols=103  Identities=17%  Similarity=0.104  Sum_probs=80.5

Q ss_pred             HHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHH
Q 001619          332 FMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVA  411 (1043)
Q Consensus       332 ~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~  411 (1043)
                      -|-+.|.+++|...|.+++.+ .|.+|-++...|.-+++...|..|..-...|+. ....+++.|.+.+.--+.+|++++
T Consensus       106 ~yFKQgKy~EAIDCYs~~ia~-~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia-Ld~~Y~KAYSRR~~AR~~Lg~~~E  183 (536)
T KOG4648|consen  106 TYFKQGKYEEAIDCYSTAIAV-YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA-LDKLYVKAYSRRMQARESLGNNME  183 (536)
T ss_pred             hhhhccchhHHHHHhhhhhcc-CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH-hhHHHHHHHHHHHHHHHHHhhHHH
Confidence            345789999999999999987 667777777777777888888888877777774 345677888888888888999999


Q ss_pred             HHHHHHHHHHHHHhhccCCccHHHHHHHHHH
Q 001619          412 ACDTYKEALETAAEQRKFHTLPLLYVQFSRL  442 (1043)
Q Consensus       412 Ar~lyekale~~~~~~~~p~~~~l~~~~ar~  442 (1043)
                      |.+-|+.+|++      .|..-.|--.+++.
T Consensus       184 AKkD~E~vL~L------EP~~~ELkK~~a~i  208 (536)
T KOG4648|consen  184 AKKDCETVLAL------EPKNIELKKSLARI  208 (536)
T ss_pred             HHHhHHHHHhh------CcccHHHHHHHHHh
Confidence            99999999998      45545555555544

>PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C

Probab=89.46  E-value=0.11  Score=56.92  Aligned_cols=10  Identities=30%  Similarity=0.587  Sum_probs=0.0

Q ss_pred             cccccccCCC
Q 001619          739 SVLGASQNNN  748 (1043)
Q Consensus       739 ~~~~~~~~~~  748 (1043)
                      ||||--++++
T Consensus       268 TvLgpDtYD~  277 (468)
T PF11498_consen  268 TVLGPDTYDT  277 (468)
T ss_dssp             ----------
T ss_pred             cccCccchHH
Confidence            3444444443

elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.03  E-value=36  Score=36.52  Aligned_cols=117  Identities=19%  Similarity=0.131  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc-----ccchHHHHHH
Q 001619          291 NWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLK-----RLPVIHLFNA  365 (1043)
Q Consensus       291 ~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~-----~~p~iwl~~A  365 (1043)
                      .+.+.+++..+.|+...+-.+|-.|-.              -+ +.++.++|...+++|+.+|..     .-+..++..+
T Consensus        56 aflkaA~~h~k~~skhDaat~YveA~~--------------cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~ia  120 (288)
T KOG1586|consen   56 AFLKAADLHLKAGSKHDAATTYVEAAN--------------CY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIA  120 (288)
T ss_pred             HHHHHHHHHHhcCCchhHHHHHHHHHH--------------Hh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHH
Confidence            455666777777777766666666543              22 345889999999999998653     1234566677


Q ss_pred             HHHHH-hCCHHHHHHHHHhhhhC-----CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619          366 RYKEQ-IGDTSAARAAFPESYID-----SDSRFIEKVTFKANMERRLGNFVAACDTYKEALET  422 (1043)
Q Consensus       366 ~~E~~-~g~~d~Ar~ll~ral~~-----~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~  422 (1043)
                      ++.+. ..++++|...|+.|-.-     .....-+-+++-+++-..+|.+.+|.++|++....
T Consensus       121 EiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~  183 (288)
T KOG1586|consen  121 EIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARS  183 (288)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            76664 58999999999988641     11111235677777777888999999999998775

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=88.75  E-value=5.7  Score=42.38  Aligned_cols=93  Identities=16%  Similarity=0.217  Sum_probs=54.4

Q ss_pred             CChHHHHHHHHHHhcc----CCC---cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHH
Q 001619          303 GDFDWVVKLYERCLIP----CAD---YPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTS  375 (1043)
Q Consensus       303 g~~e~~~~lyerAl~~----~~~---~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d  375 (1043)
                      .+.+.++..|.-|+..    ..+   ...+|++.|=.+...|+.+.....+.+|+                         
T Consensus        91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al-------------------------  145 (214)
T PF09986_consen   91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKAL-------------------------  145 (214)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH-------------------------
Confidence            3677777777777742    111   13445555444444444444444444444                         


Q ss_pred             HHHHHHHhhhhCC-C----hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001619          376 AARAAFPESYIDS-D----SRFIEKVTFKANMERRLGNFVAACDTYKEALETA  423 (1043)
Q Consensus       376 ~Ar~ll~ral~~~-~----~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~  423 (1043)
                         ..|.+|...- .    -+...+.+.-+.|.+++|++++|...|.+++...
T Consensus       146 ---~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  146 ---EFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             ---HHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence               3444444311 1    1224456667889999999999999999999853

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=88.73  E-value=5.5  Score=47.89  Aligned_cols=122  Identities=17%  Similarity=0.028  Sum_probs=82.7

Q ss_pred             cCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH--hcccc-hHHHHHHHHHHHhCCHHHHH
Q 001619          302 QGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIF--LKRLP-VIHLFNARYKEQIGDTSAAR  378 (1043)
Q Consensus       302 ~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~--~~~~p-~iwl~~A~~E~~~g~~d~Ar  378 (1043)
                      ..+.+.+..++++.....|+..-+-..-++++...|++++|...|++|+..-  .+... -++...+.......++++|.
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~  325 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA  325 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence            3467889999999999999876555566678888999999999999988531  11111 23445566677899999999


Q ss_pred             HHHHhhhhCCChhhHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHH
Q 001619          379 AAFPESYIDSDSRFIEKVTFKANMERRLGNF-------VAACDTYKEALETA  423 (1043)
Q Consensus       379 ~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~-------e~Ar~lyekale~~  423 (1043)
                      ..|.+.++...-...-+.+..+-....+|+.       ++|.++|.++-...
T Consensus       326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  326 EYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence            9999998643321122222334455556777       66666666655543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=88.44  E-value=46  Score=39.44  Aligned_cols=130  Identities=13%  Similarity=-0.012  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc--ccchHHHHHHHHH
Q 001619          291 NWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLK--RLPVIHLFNARYK  368 (1043)
Q Consensus       291 ~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~--~~p~iwl~~A~~E  368 (1043)
                      .+...+..+..+ ..+....++||.+..|-+...+=-..|.+||+ ++...+...|.+|+..+.+  ....|---|+++-
T Consensus       101 al~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~  178 (711)
T COG1747         101 ALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLP  178 (711)
T ss_pred             HHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHH
Confidence            444455555545 44667788888888888888888889999987 7889999999999988776  3445555666664


Q ss_pred             H-HhCCHHHHHHHHHhhhhCCChhhHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHH
Q 001619          369 E-QIGDTSAARAAFPESYIDSDSRFIEKVTFKA-NMERRLGNFVAACDTYKEALET  422 (1043)
Q Consensus       369 ~-~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a-~lE~~~G~~e~Ar~lyekale~  422 (1043)
                      + --.+.|.-..+..+.-+........+.+.++ +-.....|+++|..++.-.++.
T Consensus       179 ~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~  234 (711)
T COG1747         179 ELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEH  234 (711)
T ss_pred             HhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhh
Confidence            4 3556777666665553322222233333333 1223346899999999988886

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=88.42  E-value=11  Score=41.58  Aligned_cols=60  Identities=18%  Similarity=0.236  Sum_probs=32.4

Q ss_pred             CCCchHHHHHHHHHHHhhcCCCccccCChhhHH----HHHHHHHHH--HHHcC--CHHHHHHHHHHHHhhCC
Q 001619          455 GGRSHISIVDAVISNALYSRPDVLKVFSLEDVE----DISSLYLQF--LDLCG--TIHDIRNAWNQHIKLFP  518 (1043)
Q Consensus       455 g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~----~l~~lwl~f--ee~~G--~~~~a~~~~~ra~k~~p  518 (1043)
                      |++-.+...|+|+|--.. .|-+  .+ .+..+    +..+.|+..  +...|  .++++.++-.|.+-.+.
T Consensus       245 gntlsl~~~R~ILEtrma-vpGK--Si-~EhNEviGMdaAmkyiN~sLvski~~itI~DiLE~HRRVLG~vD  312 (472)
T KOG3824|consen  245 GNTLSLGQTRAILETRMA-VPGK--SI-REHNEVIGMDAAMKYINCSLVSKIHDITIDDILEMHRRVLGNVD  312 (472)
T ss_pred             ccccchHHHHHHHhhccc-CCCc--Ch-HHhhhhhhHHHHHHHhhhHhhhhccceeHHHHHHHHHHHhcCCC
Confidence            555456778999986433 1211  11 11111    123334433  33455  47888888888887774

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=87.97  E-value=4.8  Score=42.95  Aligned_cols=96  Identities=11%  Similarity=-0.090  Sum_probs=76.9

Q ss_pred             CCccHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001619           19 VGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFER   98 (1043)
Q Consensus        19 ~~~~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeR   98 (1043)
                      .++.+..|-++|..||.....|..-+...-+.  ...+....-.+|++...|++++--.....+......++.+..++.|
T Consensus        26 y~~ai~~y~raI~~nP~~~~Y~tnralchlk~--~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr  103 (284)
T KOG4642|consen   26 YDDAIDCYSRAICINPTVASYYTNRALCHLKL--KHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR  103 (284)
T ss_pred             hchHHHHHHHHHhcCCCcchhhhhHHHHHHHh--hhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            45678899999999999999998865543334  6788888889999999999999887777777777789999999999


Q ss_pred             HHHh-----cCCCHHHHHHHHHH
Q 001619           99 AVQS-----ATYSVDVWFHYCSL  116 (1043)
Q Consensus        99 AL~~-----~P~s~~LWl~Y~~~  116 (1043)
                      |...     ++.-.+||..+.+.
T Consensus       104 a~sl~r~~~~~~~~di~~~L~~a  126 (284)
T KOG4642|consen  104 AYSLLREQPFTFGDDIPKALRDA  126 (284)
T ss_pred             HHHHHhcCCCCCcchHHHHHHHH
Confidence            9654     24456788776554

>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene

Probab=87.23  E-value=42  Score=42.71  Aligned_cols=96  Identities=20%  Similarity=0.287  Sum_probs=47.7

Q ss_pred             CCCccccccccccccccccccCCCcccc----ccCCCchhh--hccccccCChhhhhhhhhhhhhccccccchhhhcccc
Q 001619          595 PENHDIRSDGAEVDILLSGEADSSSQDR----MQQVPPEAA--EQHSQDACDPEVLSLDLAHQVTNENETVQASEAFSEE  668 (1043)
Q Consensus       595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  668 (1043)
                      +-|-|+++.||.-....|--..+.-.|.    -..++++++  .|..|-.-|..++..|---..+.....   -+..+.-
T Consensus        34 p~~e~~rs~gr~sp~~~stss~d~k~e~~~~~~kk~kee~~~~~k~~k~~r~~~~~~~~~~~~~~~k~~k---~~~~~~p  110 (982)
T PF03154_consen   34 PTNEDLRSSGRASPSAASTSSSDSKAESSKKTNKKIKEEASSPLKSSKRQREKPASESEEPERAAPKKSK---TQELSRP  110 (982)
T ss_pred             CchhhhcccCCCCCCccccccccccccccccccccccccccccCccccccccccccccccccccccccCC---cccCCCC
Confidence            4577889999887776665433322222    222333333  244444444444443331111111111   2445555


Q ss_pred             hhhh-hhhcccccccCCCCCccCCcCCCCC
Q 001619          669 DDVQ-REYEHESKKDLKPLSLEGLSLDPGG  697 (1043)
Q Consensus       669 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  697 (1043)
                      ++-. .|+|+|-+.|    |+|+=|+|--+
T Consensus       111 ~sps~~e~e~e~e~e----s~d~rs~nd~g  136 (982)
T PF03154_consen  111 NSPSESEGEGEGEGE----SSDGRSVNDDG  136 (982)
T ss_pred             CCCccccccccCccc----ccccccccccC
Confidence            5433 5666665554    77777777655

DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=86.85  E-value=1.5  Score=31.19  Aligned_cols=29  Identities=21%  Similarity=0.218  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001619          324 EFWMRYVDFMESKGGREIASYALDRATQI  352 (1043)
Q Consensus       324 ~LWl~yAk~~e~~g~~e~Ar~ilerA~~~  352 (1043)
                      .+|..++..+...|++++|+..|++|+.+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            45666666666666666666666666655

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=86.80  E-value=19  Score=42.59  Aligned_cols=137  Identities=12%  Similarity=0.021  Sum_probs=86.8

Q ss_pred             CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhcc-------------CCCcHHHH------------HHHHHHHHHcCC
Q 001619          284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIP-------------CADYPEFW------------MRYVDFMESKGG  338 (1043)
Q Consensus       284 ~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~-------------~~~~~~LW------------l~yAk~~e~~g~  338 (1043)
                      ++|+..+.|.-+++  +...++.++..+|++|++.             .+...++|            .++|...++.|.
T Consensus       197 i~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr  274 (539)
T PF04184_consen  197 INPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGR  274 (539)
T ss_pred             hhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCC
Confidence            45666666643332  2245678889999999862             12222222            345666788999


Q ss_pred             hHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHH-cCC--------
Q 001619          339 REIASYALDRATQIFLK-RLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERR-LGN--------  408 (1043)
Q Consensus       339 ~e~Ar~ilerA~~~~~~-~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~-~G~--------  408 (1043)
                      .++|.+.|...++.+.. +.-.|.-...+.+...+.+.++.+++.+--+...|+++.+.+..|-|..| .|+        
T Consensus       275 ~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~  354 (539)
T PF04184_consen  275 LREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAAS  354 (539)
T ss_pred             hHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhh
Confidence            99999999888876432 23346666677778899999999999986433345666554444444322 222        


Q ss_pred             -------HHHHHHHHHHHHHH
Q 001619          409 -------FVAACDTYKEALET  422 (1043)
Q Consensus       409 -------~e~Ar~lyekale~  422 (1043)
                             ...|.+...||++.
T Consensus       355 rRGls~ae~~aveAi~RAvef  375 (539)
T PF04184_consen  355 RRGLSPAEMNAVEAIHRAVEF  375 (539)
T ss_pred             hcCCChhHHHHHHHHHHHHHh
Confidence                   23466778888886

The molecular function of this protein is uncertain.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=85.32  E-value=1.4e+02  Score=39.29  Aligned_cols=34  Identities=15%  Similarity=0.197  Sum_probs=16.0

Q ss_pred             hHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhh
Q 001619          124 PNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQ  159 (1043)
Q Consensus       124 ~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~  159 (1043)
                      ++.-++-|++||.++-..  ....|...++|.++++
T Consensus       889 ID~~L~ry~~AL~hLs~~--~~~~~~e~~n~I~kh~  922 (1265)
T KOG1920|consen  889 IDDYLKRYEDALSHLSEC--GETYFPECKNYIKKHG  922 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHc--CccccHHHHHHHHhcc
Confidence            445555555555544221  1234555555555444

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=85.31  E-value=2.2  Score=30.60  Aligned_cols=32  Identities=13%  Similarity=0.226  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 001619           74 GYWRKYADHKARLCSIDKVVEVFERAVQSATY  105 (1043)
Q Consensus        74 ~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~  105 (1043)
                      +.|...+......+++++|...|+|||+..|.
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            56777777777888888888888888888774

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=85.03  E-value=1.4e+02  Score=39.18  Aligned_cols=59  Identities=15%  Similarity=0.285  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001619          291 NWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQI  352 (1043)
Q Consensus       291 ~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~  352 (1043)
                      .|-...+|.+++|-+.++..+|.--.   .+...+...||+.+...+..++|.-.|+++-+.
T Consensus       910 ~~~e~~n~I~kh~Ly~~aL~ly~~~~---e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl  968 (1265)
T KOG1920|consen  910 YFPECKNYIKKHGLYDEALALYKPDS---EKQKVIYEAYADHLREELMSDEAALMYERCGKL  968 (1265)
T ss_pred             ccHHHHHHHHhcccchhhhheeccCH---HHHHHHHHHHHHHHHHhccccHHHHHHHHhccH
Confidence            45566667777765555444443222   235677888888888888888888888776543

>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus

Probab=84.76  E-value=4.2  Score=45.84  Aligned_cols=86  Identities=8%  Similarity=0.138  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Q 001619           74 GYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIE  153 (1043)
Q Consensus        74 ~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~  153 (1043)
                      .+|....+......-.+++...|..+|.++               ..+.-.++++.+++.-+..+|.--.....|+..++
T Consensus        84 sFw~tm~eEde~~~~t~kvn~tlsECl~Li---------------~eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Ar  148 (353)
T PF15297_consen   84 SFWTTMAEEDEQRLFTEKVNKTLSECLNLI---------------EEGCPKEEILATLSDLIKNIPDAKKLAKYWICLAR  148 (353)
T ss_pred             ccccchhhhhhHHHHHHHHHHHHHHHHHHH---------------HcCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence            489887765443334567777777777652               12134567888888888888765445689999999


Q ss_pred             HHHHhhhhhhHHHHHHHHhcC
Q 001619          154 FEISQQRWSSLAQIFVQTLRF  174 (1043)
Q Consensus       154 fe~~~~~~e~a~~iy~raL~~  174 (1043)
                      ++...|.++.+..||+.|+..
T Consensus       149 l~~~~~~~e~vi~iyEeAi~a  169 (353)
T PF15297_consen  149 LEPRTGPIEDVIAIYEEAILA  169 (353)
T ss_pred             HHhhcCCHHHHHHHHHHHHHc
Confidence            999999999999999999754

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=84.71  E-value=3.6  Score=52.92  Aligned_cols=116  Identities=17%  Similarity=0.226  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHH---cC-C-hHHHHHHHHHHhccC---------CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 001619          288 QLKNWHDYLSFAEK---QG-D-FDWVVKLYERCLIPC---------ADYPEFWMRYVDFMESKGGREIASYALDRATQIF  353 (1043)
Q Consensus       288 ~~~~W~~yi~~e~~---~g-~-~e~~~~lyerAl~~~---------~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~  353 (1043)
                      -+..|..|+.|...   .| . ...++.+.+||+...         +.+..+|+-    ++......+++.+|......-
T Consensus        33 Pl~~w~ryi~wv~~~~~~~~~~~~~l~~~lerc~~~~~~lk~Y~nD~Rfl~~~~~----~~~~e~~~d~~d~f~~m~~kg  108 (974)
T KOG1166|consen   33 PLDKWLRYIEWVLEVYPEGKENQSLLRNLLERCLEELEDLKRYRNDPRFLILWCS----LELREELQDAEDFFSYLENKG  108 (974)
T ss_pred             chhhhHhHhhhhhhccccCCchhhhHHHHHHHHHHhccchhhccccHHHHHHHHh----HHHHHHHhhHHHHHHHHHhcc
Confidence            35789999999874   23 3 456788888888642         223455554    122223456677776554321


Q ss_pred             -hcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcC
Q 001619          354 -LKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLG  407 (1043)
Q Consensus       354 -~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G  407 (1043)
                       ......++..|+.++++.+.+.+|.++|..++........++-..|..|..++|
T Consensus       109 Ig~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~rL~~~~~~F~~r~~  163 (974)
T KOG1166|consen  109 IGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLERLLRQYSNFQQRLM  163 (974)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Confidence             123456788889999999999999999998886433333455555555666554

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=84.67  E-value=85  Score=36.41  Aligned_cols=176  Identities=11%  Similarity=-0.018  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhcc----CCCcHHHHHHHHHHHHH---cCChHHHHHHHHHHHHHHhcccchHHHH
Q 001619          291 NWHDYLSFAEKQGDFDWVVKLYERCLIP----CADYPEFWMRYVDFMES---KGGREIASYALDRATQIFLKRLPVIHLF  363 (1043)
Q Consensus       291 ~W~~yi~~e~~~g~~e~~~~lyerAl~~----~~~~~~LWl~yAk~~e~---~g~~e~Ar~ilerA~~~~~~~~p~iwl~  363 (1043)
                      +-+.++--+....+++..+.+++..-..    ..+...+=..||-.+.+   .|+.++|+.++..++..-....+++++.
T Consensus       143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL  222 (374)
T PF13281_consen  143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL  222 (374)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence            3334444444556788888888876654    34566777788888877   8999999999998766544456777776


Q ss_pred             HHHHHHH---------hCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHH----HHHHHHHHHHHHHHhhccCC
Q 001619          364 NARYKEQ---------IGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFV----AACDTYKEALETAAEQRKFH  430 (1043)
Q Consensus       364 ~A~~E~~---------~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e----~Ar~lyekale~~~~~~~~p  430 (1043)
                      ++.....         ...+++|...|.++.... +++ --=+.++.|..-.|.-.    +.+++--+.-.....+....
T Consensus       223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~-~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~  300 (374)
T PF13281_consen  223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE-PDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE  300 (374)
T ss_pred             HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC-ccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence            6554422         224789999999998643 321 11234455555555422    23333311111111111111


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCc
Q 001619          431 TLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDV  477 (1043)
Q Consensus       431 ~~~~l~~~~ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~  477 (1043)
                      ....        .|....-||...... ..+++....++++...|+.
T Consensus       301 ~~~d--------YWd~ATl~Ea~vL~~-d~~ka~~a~e~~~~l~~~~  338 (374)
T PF13281_consen  301 KMQD--------YWDVATLLEASVLAG-DYEKAIQAAEKAFKLKPPA  338 (374)
T ss_pred             cccc--------HHHHHHHHHHHHHcC-CHHHHHHHHHHHhhcCCcc
Confidence            1112        233333344433211 2668999999988766653

>PF09770 PAT1: Topoisomerase II-associated protein PAT1; InterPro: IPR019167 Proteins in this entry are necessary for accurate chromosome transmission during cell division []

Probab=84.50  E-value=0.3  Score=62.82  Aligned_cols=13  Identities=0%  Similarity=-0.141  Sum_probs=0.0

Q ss_pred             cccCCCCcccccc
Q 001619          732 ETSLSDGSVLGAS  744 (1043)
Q Consensus       732 ~~~~~~~~~~~~~  744 (1043)
                      +|.-....+.+..
T Consensus        63 Df~~~~~~la~~~   75 (808)
T PF09770_consen   63 DFEGQHAQLAELI   75 (808)
T ss_dssp             -------------
T ss_pred             ccccccccccccc
Confidence            4444444444333

; PDB: 2XER_C 2XES_B 2XEQ_D.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=84.19  E-value=2.3  Score=30.39  Aligned_cols=32  Identities=16%  Similarity=0.236  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 001619           74 GYWRKYADHKARLCSIDKVVEVFERAVQSATY  105 (1043)
Q Consensus        74 ~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~  105 (1043)
                      ++|...+......|++++|.+.|++|++..|.
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            56778888888888888888888888887763

...

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=84.14  E-value=87  Score=36.09  Aligned_cols=198  Identities=15%  Similarity=0.068  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhccC--CC----cHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHhcccchHHHH
Q 001619          291 NWHDYLSFAEKQGDFDWVVKLYERCLIPC--AD----YPEFWMRYVDFMES-KGGREIASYALDRATQIFLKRLPVIHLF  363 (1043)
Q Consensus       291 ~W~~yi~~e~~~g~~e~~~~lyerAl~~~--~~----~~~LWl~yAk~~e~-~g~~e~Ar~ilerA~~~~~~~~p~iwl~  363 (1043)
                      .|...++-....|+.+.++.+.+......  .+    -...-+--++-.+. ..|...||..-..+.++ .+++.---+.
T Consensus       190 A~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL-~pdlvPaav~  268 (531)
T COG3898         190 AARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL-APDLVPAAVV  268 (531)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCccchHHHH
Confidence            44444444444567777766666554321  11    11111222222222 12455555554445444 2332223344


Q ss_pred             HHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHH
Q 001619          364 NARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLT  443 (1043)
Q Consensus       364 ~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~  443 (1043)
                      .++.+.+.|++-++-+|++.+-+. .| +..||..|++.  +.|+.  +..-++++-.+..-+   |....--       
T Consensus       269 AAralf~d~~~rKg~~ilE~aWK~-eP-HP~ia~lY~~a--r~gdt--a~dRlkRa~~L~slk---~nnaes~-------  332 (531)
T COG3898         269 AARALFRDGNLRKGSKILETAWKA-EP-HPDIALLYVRA--RSGDT--ALDRLKRAKKLESLK---PNNAESS-------  332 (531)
T ss_pred             HHHHHHhccchhhhhhHHHHHHhc-CC-ChHHHHHHHHh--cCCCc--HHHHHHHHHHHHhcC---ccchHHH-------
Confidence            556666666666666666666542 22 24556666443  22332  222222222211000   0001000       


Q ss_pred             HHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCC
Q 001619          444 YTELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLC-GTIHDIRNAWNQHIKLFPH  519 (1043)
Q Consensus       444 ~~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~-G~~~~a~~~~~ra~k~~p~  519 (1043)
                       ....+--...|+   ...+|+--|.+....|.          +.++.+..+.|+-. |+...++..+.+++++-.+
T Consensus       333 -~~va~aAlda~e---~~~ARa~Aeaa~r~~pr----------es~~lLlAdIeeAetGDqg~vR~wlAqav~APrd  395 (531)
T COG3898         333 -LAVAEAALDAGE---FSAARAKAEAAAREAPR----------ESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRD  395 (531)
T ss_pred             -HHHHHHHHhccc---hHHHHHHHHHHhhhCch----------hhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCC
Confidence             000000001122   34567766766665554          45778888888765 9999999999999988644

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=83.86  E-value=2  Score=46.99  Aligned_cols=56  Identities=13%  Similarity=0.207  Sum_probs=44.0

Q ss_pred             HHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCC
Q 001619           84 ARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGK  140 (1043)
Q Consensus        84 ~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~  140 (1043)
                      .+.|+.++|..+|+-||...|.++++.+.|..|...+ +++-.|-..|-+||..-|.
T Consensus       127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~-~~iv~ADq~Y~~ALtisP~  182 (472)
T KOG3824|consen  127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMH-NEIVEADQCYVKALTISPG  182 (472)
T ss_pred             HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhh-hhhHhhhhhhheeeeeCCC
Confidence            3457888888888888888888888888888887766 6777788888888776664

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=83.68  E-value=21  Score=36.92  Aligned_cols=65  Identities=17%  Similarity=0.298  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcC
Q 001619           74 GYWRKYADHKARLCSIDKVVEVFERAVQSATY---SVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVG  139 (1043)
Q Consensus        74 ~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~---s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp  139 (1043)
                      ..|...+++..+.|++++|.+.|.|+...+..   .+++|+..++..+.. ++...+...+++|-..+.
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~-~d~~~v~~~i~ka~~~~~  104 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFF-GDWSHVEKYIEKAESLIE  104 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHh
Confidence            34667778888889999999999998887532   457888888887777 788888888888877654

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=83.48  E-value=50  Score=39.75  Aligned_cols=119  Identities=13%  Similarity=0.107  Sum_probs=77.1

Q ss_pred             cCChHHHHHHHHHHhccCCCcH------HH-HHHHHH-HHH---HcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Q 001619          302 QGDFDWVVKLYERCLIPCADYP------EF-WMRYVD-FME---SKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQ  370 (1043)
Q Consensus       302 ~g~~e~~~~lyerAl~~~~~~~------~L-Wl~yAk-~~e---~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~  370 (1043)
                      .||.+.....+.+|.....-..      -| |..++. |.-   ...+++.|..++++.... .|+.....+..++++..
T Consensus       201 ~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~-yP~s~lfl~~~gR~~~~  279 (468)
T PF10300_consen  201 SGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR-YPNSALFLFFEGRLERL  279 (468)
T ss_pred             CCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHH
Confidence            5899999999999987422111      11 222222 222   244688999999999887 45565444566899999


Q ss_pred             hCCHHHHHHHHHhhhhCCC----hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619          371 IGDTSAARAAFPESYIDSD----SRFIEKVTFKANMERRLGNFVAACDTYKEALET  422 (1043)
Q Consensus       371 ~g~~d~Ar~ll~ral~~~~----~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~  422 (1043)
                      .|++++|.+.|.+++....    -..+-+|-. +-.--..+++++|...|.+.++.
T Consensus       280 ~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El-~w~~~~~~~w~~A~~~f~~L~~~  334 (468)
T PF10300_consen  280 KGNLEEAIESFERAIESQSEWKQLHHLCYFEL-AWCHMFQHDWEEAAEYFLRLLKE  334 (468)
T ss_pred             hcCHHHHHHHHHHhccchhhHHhHHHHHHHHH-HHHHHHHchHHHHHHHHHHHHhc
Confidence            9999999999999884211    011112222 11222347999999999998884

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=83.47  E-value=69  Score=35.65  Aligned_cols=84  Identities=14%  Similarity=0.044  Sum_probs=50.5

Q ss_pred             HHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHH
Q 001619          331 DFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFV  410 (1043)
Q Consensus       331 k~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e  410 (1043)
                      +-....|++.+|..+|..++.. .+...++-+.+++.....|+++.|..+|...=.....+-.......+.|.++..+..
T Consensus       142 ~~~~~~e~~~~a~~~~~~al~~-~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~  220 (304)
T COG3118         142 KELIEAEDFGEAAPLLKQALQA-APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP  220 (304)
T ss_pred             hhhhhccchhhHHHHHHHHHHh-CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence            3344567888888888888776 455567888888888888888888888865422111111111223455555554444


Q ss_pred             HHHHH
Q 001619          411 AACDT  415 (1043)
Q Consensus       411 ~Ar~l  415 (1043)
                      +.-.+
T Consensus       221 ~~~~l  225 (304)
T COG3118         221 EIQDL  225 (304)
T ss_pred             CHHHH
Confidence            43333

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=83.21  E-value=21  Score=43.03  Aligned_cols=30  Identities=13%  Similarity=0.028  Sum_probs=22.2

Q ss_pred             ccchHHHHHHHHHHHhCCHHHHHHHHHhhh
Q 001619          356 RLPVIHLFNARYKEQIGDTSAARAAFPESY  385 (1043)
Q Consensus       356 ~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral  385 (1043)
                      -.+.+++-|+.+..+...+++|.+.|.+|-
T Consensus       802 ~~~dVy~pyaqwLAE~DrFeEAqkAfhkAG  831 (1081)
T KOG1538|consen  802 FKDDVYMPYAQWLAENDRFEEAQKAFHKAG  831 (1081)
T ss_pred             ccccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence            356777778888877777887777777664

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.06  E-value=25  Score=38.38  Aligned_cols=50  Identities=12%  Similarity=0.085  Sum_probs=25.0

Q ss_pred             CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhc
Q 001619           88 SIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFV  138 (1043)
Q Consensus        88 ~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~l  138 (1043)
                      .+.+|.-+|+..-...+..+.+-..-+...+.. +++++|..+++.||..-
T Consensus       188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~-~~~eeAe~lL~eaL~kd  237 (299)
T KOG3081|consen  188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQL-GRYEEAESLLEEALDKD  237 (299)
T ss_pred             hhhhHHHHHHHHhcccCCChHHHccHHHHHHHh-cCHHHHHHHHHHHHhcc
Confidence            344555555555554444444444444444444 55555555555555443

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=82.36  E-value=45  Score=38.61  Aligned_cols=123  Identities=14%  Similarity=0.162  Sum_probs=75.3

Q ss_pred             CChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHH-HHHHHHHhCCHHHHHHHH
Q 001619          303 GDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLF-NARYKEQIGDTSAARAAF  381 (1043)
Q Consensus       303 g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~-~A~~E~~~g~~d~Ar~ll  381 (1043)
                      +|++.+..++    ..+|.+.+--+..+..+...|+.+.|..+++||+-++-.    .|.. +..+...... -.+|--|
T Consensus        24 ~Dp~~l~~ll----~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~----~~~~~F~~~~~~~~~-g~~rL~~   94 (360)
T PF04910_consen   24 HDPNALINLL----QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFER----AFHPSFSPFRSNLTS-GNCRLDY   94 (360)
T ss_pred             cCHHHHHHHH----HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----HHHHHhhhhhccccc-CccccCC
Confidence            4777777665    457999999999999999999999999999999877332    1111 1010000000 0011111


Q ss_pred             HhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHH
Q 001619          382 PESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQF  439 (1043)
Q Consensus       382 ~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~  439 (1043)
                      .+.  + +-.......+|+....+.|.+..|.++.+-.+.+-..  .+|.-..++++|
T Consensus        95 ~~~--e-NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~--~DP~g~ll~ID~  147 (360)
T PF04910_consen   95 RRP--E-NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPD--EDPLGVLLFIDY  147 (360)
T ss_pred             ccc--c-chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC--CCcchhHHHHHH
Confidence            111  1 1122334556777777889999999999999887211  144445666666

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=81.74  E-value=1.4e+02  Score=36.80  Aligned_cols=15  Identities=20%  Similarity=0.638  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHHHHHc
Q 001619          288 QLKNWHDYLSFAEKQ  302 (1043)
Q Consensus       288 ~~~~W~~yi~~e~~~  302 (1043)
                      ++.-|-+.+++..+.
T Consensus       890 ~LnQW~~avelaq~~  904 (1189)
T KOG2041|consen  890 ELNQWGEAVELAQRF  904 (1189)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            445566666655443

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=81.39  E-value=20  Score=39.73  Aligned_cols=61  Identities=15%  Similarity=0.209  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHH
Q 001619           75 YWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALS  136 (1043)
Q Consensus        75 lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~  136 (1043)
                      .-.++++.+...++++.+.+.+++.+...|+.-.+|...+...... +....|+..|++.-+
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~-g~~~~ai~~y~~l~~  215 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVN-GRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHc-CCchHHHHHHHHHHH
Confidence            3345556566667889999999999999999999999999998888 888888888887654

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=80.89  E-value=1.5e+02  Score=36.57  Aligned_cols=41  Identities=15%  Similarity=0.340  Sum_probs=24.2

Q ss_pred             HHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhc
Q 001619          132 KRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLR  173 (1043)
Q Consensus       132 erAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~  173 (1043)
                      +.|...+...+ +.++|.+.+++....-.++.|...|-|.-.
T Consensus       680 edA~qfiEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~d  720 (1189)
T KOG2041|consen  680 EDAIQFIEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGD  720 (1189)
T ss_pred             HHHHHHHhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhcc
Confidence            34444443333 578888887776655556666666665543

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=80.66  E-value=3.8  Score=29.26  Aligned_cols=29  Identities=21%  Similarity=0.225  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001619          324 EFWMRYVDFMESKGGREIASYALDRATQI  352 (1043)
Q Consensus       324 ~LWl~yAk~~e~~g~~e~Ar~ilerA~~~  352 (1043)
                      .+|...+..+...|+++.|...|++|+++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~   30 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            57888888888888888888888888776

...

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=80.47  E-value=95  Score=34.00  Aligned_cols=102  Identities=9%  Similarity=-0.036  Sum_probs=64.7

Q ss_pred             CChHHHHHHHHHHHHHHHc-CChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHhcccchHH
Q 001619          284 LDDIQLKNWHDYLSFAEKQ-GDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGRE-IASYALDRATQIFLKRLPVIH  361 (1043)
Q Consensus       284 ~~p~~~~~W~~yi~~e~~~-g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e-~Ar~ilerA~~~~~~~~p~iw  361 (1043)
                      ++|.++.+|.-+-..++.. .+..+-...+++.+.-+|+...+|...-...+..|+.. .-..+..+++.. -.++--+|
T Consensus        72 lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~-DaKNYHaW  150 (318)
T KOG0530|consen   72 LNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDD-DAKNYHAW  150 (318)
T ss_pred             hCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhc-cccchhhh
Confidence            7899999998776666543 35666677888888889999999999999889888765 444455555443 11122244


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHhhhh
Q 001619          362 LFNARYKEQIGDTSAARAAFPESYI  386 (1043)
Q Consensus       362 l~~A~~E~~~g~~d~Ar~ll~ral~  386 (1043)
                      ---.......+.++.-...-...++
T Consensus       151 shRqW~~r~F~~~~~EL~y~~~Lle  175 (318)
T KOG0530|consen  151 SHRQWVLRFFKDYEDELAYADELLE  175 (318)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            4333333334445554444444443

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=80.23  E-value=15  Score=47.44  Aligned_cols=122  Identities=13%  Similarity=0.128  Sum_probs=81.3

Q ss_pred             ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHc----CC-hHHHHHHHHHHHHHHhc----
Q 001619          285 DDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESK----GG-REIASYALDRATQIFLK----  355 (1043)
Q Consensus       285 ~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~----g~-~e~Ar~ilerA~~~~~~----  355 (1043)
                      ++.-...|..|+..++...               ..+....|.+|+.+....    +. ....+.+++|++..+.+    
T Consensus        11 ~~~~~n~eq~li~el~~~~---------------~~DPl~~w~ryi~wv~~~~~~~~~~~~~l~~~lerc~~~~~~lk~Y   75 (974)
T KOG1166|consen   11 NPTPLNYEQRLIYELESYA---------------GNDPLDKWLRYIEWVLEVYPEGKENQSLLRNLLERCLEELEDLKRY   75 (974)
T ss_pred             cCcHHHHHHHHHHHHHhhc---------------CCCchhhhHhHhhhhhhccccCCchhhhHHHHHHHHHHhccchhhc
Confidence            3455567777766665221               234567899999987542    23 67888999999876432    


Q ss_pred             -ccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCC-ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619          356 -RLPVIHLFNARYKEQIGDTSAARAAFPESYIDS-DSRFIEKVTFKANMERRLGNFVAACDTYKEALET  422 (1043)
Q Consensus       356 -~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~-~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~  422 (1043)
                       ..+.+...|.. .+....+.+|+.+|..+-... .....-+|..|+.+.++.+.+.+|.++|..+++.
T Consensus        76 ~nD~Rfl~~~~~-~~~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~  143 (974)
T KOG1166|consen   76 RNDPRFLILWCS-LELREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQN  143 (974)
T ss_pred             cccHHHHHHHHh-HHHHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             22332222222 234456778888888776533 3344557889999999999999999999999885

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.21  E-value=34  Score=38.44  Aligned_cols=138  Identities=14%  Similarity=-0.037  Sum_probs=93.4

Q ss_pred             ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhcc----CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchH
Q 001619          285 DDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIP----CADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVI  360 (1043)
Q Consensus       285 ~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~----~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~i  360 (1043)
                      .|++.-.|..-=+...-+|+-+--+..++|.+-.    .|-+.-+-=+||--++..|-+++|.+.-+||+.+ ++...+.
T Consensus       133 ~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqi-N~~D~Wa  211 (491)
T KOG2610|consen  133 YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQI-NRFDCWA  211 (491)
T ss_pred             CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccC-CCcchHH
Confidence            4777777765544444477777777788887743    3445677778888888899999999999999987 5443333


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHhhhhCCChhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001619          361 HLFNARYKEQIGDTSAARAAFPESYIDSDSRF---IEKVTFKANMERRLGNFVAACDTYKEALETA  423 (1043)
Q Consensus       361 wl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~---~~lw~~~a~lE~~~G~~e~Ar~lyekale~~  423 (1043)
                      .-+.+-..+-+|.+.++.+.+.+.-..-....   .-.|-..+-|-.+-+.++.|.+||++-|-..
T Consensus       212 ~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei~k~  277 (491)
T KOG2610|consen  212 SHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREIWKR  277 (491)
T ss_pred             HHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHHHHH
Confidence            44556677889999999999887643111100   0123334445555589999999998866543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1043
2ooe_A	530	Crystal Structure Of Hat Domain Of Murine Cstf-77 L		2e-05

>pdb|2OOE|A Chain A, Crystal Structure Of Hat Domain Of Murine Cstf-77 Length = 530

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 8/132 (6%)
Query: 27  EEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARL 86
           E+ + E   D D W+ L+ E +N   D        Y+  +A+FP    +W+ Y + + + 
Sbjct: 3   EKKLEENPYDLDAWSILIREAQNQPIDKARK---TYERLVAQFPSSGRFWKLYIEAEIKA 59
Query: 87  CSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSF----VGKDY 142
            + DKV ++F+R +    + +D+W  Y S    T       +    +A  F    +G + 
Sbjct: 60  KNYDKVEKLFQRCLMKVLH-IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEI 118
Query: 143 LCHTMWDKYIEF 154
           + + +W  YI F
Sbjct: 119 MSYQIWVDYINF 130

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1043
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	4e-53
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	5e-11
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	2e-05
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	2e-34
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	3e-05
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	4e-04
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	1e-30
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	3e-23
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	9e-11
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	1e-08
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	9e-06
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	1e-05
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-11
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	9e-11
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	7e-10
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-08
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-07
1bg1_A	596	Protein (transcription factor STAT3B); protein-DNA	3e-05
1yvl_A	683	Signal transducer and activator of transcription 1	2e-04
1bf5_A	575	Signal transducer and activator of transcription 1	4e-04
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	9e-04

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530

 Score =  194 bits (493), Expect = 4e-53
 Identities = 80/550 (14%), Positives = 166/550 (30%), Gaps = 112/550 (20%)

Query: 26  LEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKAR 85
            E+ + E   D D W+ L+ E +N     I+     Y+  +A+FP    +W+ Y + + +
Sbjct: 2   AEKKLEENPYDLDAWSILIREAQN---QPIDKARKTYERLVAQFPSSGRFWKLYIEAEIK 58

Query: 86  LCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPND----VRRLFKRALSFVGKD 141
             + DKV ++F+R +      +D+W  Y S    T          + + +  AL  +G +
Sbjct: 59  AKNYDKVEKLFQRCLM-KVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGME 117

Query: 142 YLCHTMWDKYIEFEIS---------QQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGA 192
            + + +W  YI F             QR +++ +++ +    P   +             
Sbjct: 118 IMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL---------- 167

Query: 193 WKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFI 252
           W++  + E    +    +++ +                           RS+     R +
Sbjct: 168 WRDYNKYEEGINIHLAKKMIED---------------------------RSRDYMNARRV 200

Query: 253 GEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGD-------- 304
                  A + +  +   +           P +  Q+  W  Y+ + +            
Sbjct: 201 -------AKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLI 253

Query: 305 FDWVVKLYERCLIPCADYPEFWMRYVDFMESKGG--------------REIASYALDRAT 350
              V+  YE+CL+    +P+ W     ++E                   + A+   +RA 
Sbjct: 254 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI 313

Query: 351 QIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFV 410
              LK+  +++   A Y+E         + +       D              RR     
Sbjct: 314 STLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIK 373

Query: 411 AACDTYKEALET---------------------AAEQRKFHTLPLLYVQFSRLTYTELIK 449
           +    +K+A E                       +   K   L L             I 
Sbjct: 374 SGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYID 433

Query: 450 FTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNA 509
           +       ++           L+ R         E   +I + +L F    G +  I   
Sbjct: 434 YLSHLNEDNNT--------RVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 485

Query: 510 WNQHIKLFPH 519
             +    F  
Sbjct: 486 EKRRFTAFRE 495

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530

 Score = 65.3 bits (158), Expect = 5e-11
 Identities = 50/381 (13%), Positives = 110/381 (28%), Gaps = 79/381 (20%)

Query: 22  GKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYAD 81
                ++ I + S D+     +  E E            V      +       W+KY  
Sbjct: 179 NIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQ 238

Query: 82  ----HKARLC----SIDKVVEVFERAVQSATYSVDVWFHYCSLSMS-------------T 120
               +  R         +V+  +E+ +    +  D+W+                      
Sbjct: 239 WEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNA 298

Query: 121 FEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIF---VQTLRFPSK 177
               ++   +++RA+S + K  +   ++  Y ++E S+ ++  +  I+   +        
Sbjct: 299 KLFSDEAANIYERAISTLLKKNM--LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT 356

Query: 178 KLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPS 237
            ++  Y  F + A            S                                  
Sbjct: 357 LVYIQYMKFARRAE--------GIKSGRM------------------------------- 377

Query: 238 VDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPY--FHVKPLDDIQLKNWHDY 295
              +  KA +  R     +Y  A+ ++   +  +++  + +     K  D  +      Y
Sbjct: 378 ---IFKKAREDARTR-HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEY--VLAY 431

Query: 296 LSFAEKQGDFDWVVKLYERCL----IPCADYPEFWMRYVDFMESKGGREIASYALDRATQ 351
           + +     + +    L+ER L    +P     E W R++ F  + G          R   
Sbjct: 432 IDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491

Query: 352 IFLKR--LPVIHLFNARYKEQ 370
            F +        L   RYK  
Sbjct: 492 AFREEYEGKETALLVDRYKFM 512

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530

 Score = 47.2 bits (111), Expect = 2e-05
 Identities = 20/117 (17%), Positives = 46/117 (39%), Gaps = 8/117 (6%)

Query: 47  IENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQ----S 102
           +E  C  D  +   +++  L ++     Y   Y D+ + L   +    +FER +      
Sbjct: 399 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 458

Query: 103 ATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHT---MWDKYIEFEI 156
              S ++W  + +   S   D   + ++ KR  +   ++Y       + D+Y   ++
Sbjct: 459 PEKSGEIWARFLAF-ESNIGDLASILKVEKRRFTAFREEYEGKETALLVDRYKFMDL 514

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493

 Score =  138 bits (347), Expect = 2e-34
 Identities = 63/454 (13%), Positives = 146/454 (32%), Gaps = 62/454 (13%)

Query: 75  YWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRA 134
              ++A           +  +F R ++  +Y++D+W  Y        +    +  +++  
Sbjct: 16  AIMEHARRLYMSKDYRSLESLFGRCLK-KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFT 74

Query: 135 LSFVGKDYLCHTMWDKYIEF----EISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLA 190
           L      +  + ++ +YIE     E  Q R   +   +++ L+ P   L   +  F    
Sbjct: 75  LGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDF---- 130

Query: 191 GAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYR 250
                ELE    +  +   +      +P +    +    I+ L+        ++ I    
Sbjct: 131 --ENFELELNKITGKKIVGDT-----LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEM 183

Query: 251 FIGEQIYKEASQLDEKIN-CFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVV 309
             G ++       + +++     ++   Y+     +++    +  Y  +    G  +   
Sbjct: 184 ENGMKL--GGRPHESRMHFIHNYILDSFYYA----EEV----YFFYSEYLIGIGQKEKAK 233

Query: 310 KLYERCLIPCAD-YPEFWMRYVDFMESKGG---REIASYALDRATQIFLKRLPVIHLFNA 365
           K+ ER +      +   +   V   E+  G   R+ +    + A ++F K L ++ + + 
Sbjct: 234 KVVERGIEMSDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHL 293

Query: 366 RYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAE 425
            Y  +       R  F E    ++        + A +E       A              
Sbjct: 294 NYVLKKRGLELFRKLFIELG--NEGVGPHVFIYCAFIEYYATGSRATP------------ 339

Query: 426 QRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLED 485
                +  LL    S L   E   F +  G        D   + AL+ R        LE 
Sbjct: 340 -YNIFSSGLLKHPDSTLLKEEFFLFLLRIG--------DEENARALFKR--------LEK 382

Query: 486 VEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPH 519
              +    +++  + G++   R   +Q +     
Sbjct: 383 TSRMWDSMIEYEFMVGSMELFRELVDQKMDAIKA 416

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493

 Score = 47.2 bits (111), Expect = 3e-05
 Identities = 19/165 (11%), Positives = 48/165 (29%), Gaps = 10/165 (6%)

Query: 31  AEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSID 90
                         + IE            ++ S L + P       ++     R+   +
Sbjct: 312 LGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEE 371

Query: 91  KVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDK 150
               +F+R  +    +  +W                 R L  + +  +  D +   +  +
Sbjct: 372 NARALFKRLEK----TSRMWDSMIEY-EFMVGSMELFRELVDQKMDAIKADAILPPLPPR 426

Query: 151 --YIEFEISQQRWSSLAQIFVQ---TLRFPSKKLHHYYDSFKKLA 190
              ++ E    R+      F      +R  S+ L  + ++  K++
Sbjct: 427 EHNVQMEGILGRYHCFLDSFNFLDLKIRDNSRLLDEFMENLPKIS 471

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493

 Score = 43.3 bits (101), Expect = 4e-04
 Identities = 15/169 (8%), Positives = 55/169 (32%), Gaps = 11/169 (6%)

Query: 24  QGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHK 83
           +G     A   +D +    +              +  +++  L  F      +  Y+++ 
Sbjct: 168 RGWSVKNAARLIDLEMENGMKLGGRP----HESRMHFIHNYILDSFYYAEEVYFFYSEYL 223

Query: 84  ARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYL 143
             +   +K  +V ER ++  +  + +  +Y  +         D++R +    +   +   
Sbjct: 224 IGIGQKEKAKKVVERGIE-MSDGMFLSLYYGLVMDEE-AVYGDLKRKYSMGEAESAEKVF 281

Query: 144 CH---TMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKL 189
                 +   ++ + + ++      ++F++          H +     +
Sbjct: 282 SKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVG--PHVFIYCAFI 328

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679

 Score =  128 bits (321), Expect = 1e-30
 Identities = 65/635 (10%), Positives = 150/635 (23%), Gaps = 110/635 (17%)

Query: 24  QGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHK 83
             L + I E   D   +  LL    +      + +   +D     FPL    W      +
Sbjct: 53  GKLNDMIEEQPTDIFLYVKLLKHHVSL--KQWKQVYETFDKLHDRFPLMANIWCMRLSLE 110

Query: 84  ARLCS---IDKVVEVFERAVQS--ATYSVDVWFHYCSLSMSTF-------EDPNDVRRLF 131
                      +  V  R +        + +W  Y +             E  N V + F
Sbjct: 111 FDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAF 170

Query: 132 KRALSFVGK-DYLCHTMWDKYIEFEIS---------QQRWSSLAQIFVQTLRFPSKKLHH 181
           +  +      +      W++Y+ F            QQR   + +++   L  P   L  
Sbjct: 171 QVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLES 230

Query: 182 YYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLV 241
            +  + +                                  +  T+      L       
Sbjct: 231 MWQRYTQWEQDV-----------------------------NQLTARRHIGELSAQYMNA 261

Query: 242 RSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSF--- 298
           RS                   L++                   D  QL  W +++ +   
Sbjct: 262 RSLYQDWLNITKGLKRNLPITLNQATESN-------LPKPNEYDVQQLLIWLEWIRWESD 314

Query: 299 ----AEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFL 354
                        +  +Y +        PE W    ++   K           +  Q  +
Sbjct: 315 NKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI 374

Query: 355 KRLPVIHLFNARYKEQIGDTSAARAAF----PESYIDSDSRFIEKVTFKANMERRLGNFV 410
               V+    +   E                   ++D  +   +  T ++ + +      
Sbjct: 375 PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLT 434

Query: 411 AACDTYKEALETAAEQRKFHTLPLLYVQFSRL-TYTELIKFTM----VHGGRSHISIVDA 465
                Y   ++          +     +  +L T    ++       +         V  
Sbjct: 435 YVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLE 494

Query: 466 VISNALYSRPDVLKVF-------------------------SLEDVEDISSLYLQFLDLC 500
           +      +  + +  +                             ++ I    + F    
Sbjct: 495 LGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKV 554

Query: 501 GTIHDIRNAWNQHIKLFPHTVRTAYECPGRETKSLRAFIRGKRESNVASLPQPFESEHLM 560
           G+++ +R    +  + FP            + +      +    + +  L   +    +M
Sbjct: 555 GSLNSVRTLEKRFFEKFPEV---------NKLEEFTNKYKVLDVNYLQRLELDYMVRDVM 605

Query: 561 PSASQDKKFSPPEKSDSESGDDATSLPSNQKSPLP 595
           P A    + S   K      +D  +    + +  P
Sbjct: 606 PEAIALDRGSNNLKRTMREEEDGQAFKKFKANEDP 640

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score =  100 bits (250), Expect = 3e-23
 Identities = 40/287 (13%), Positives = 80/287 (27%), Gaps = 65/287 (22%)

Query: 283 PLDDIQLKNWHDYLSF--------AEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFME 334
           P +  Q+  W  Y+ +         ++      V+  YE+CL+    +P+ W     ++E
Sbjct: 2   PQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLE 61

Query: 335 SKGG--------------REIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAA 380
                              + A+   +RA    LK+  +++   A Y+E         + 
Sbjct: 62  QSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSI 121

Query: 381 FPESYIDSDSRFIEKV-TFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQF 439
           +    +  +      V        RR     +    +K+A E         T   +YV  
Sbjct: 122 Y-NRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE------DARTRHHVYVTA 174

Query: 440 SRLTY---------------------------TELIKFTMVHGGRSHISIVDAVISNALY 472
           + + Y                              I +       ++           L+
Sbjct: 175 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNT--------RVLF 226

Query: 473 SRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPH 519
            R         E   +I + +L F    G +  I     +    F  
Sbjct: 227 ERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score = 63.1 bits (153), Expect = 9e-11
 Identities = 42/322 (13%), Positives = 96/322 (29%), Gaps = 69/322 (21%)

Query: 76  WRKYADH--------KARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMST------- 120
           W+KY           + +     +V+  +E+ +    +  D+W+        +       
Sbjct: 11  WKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEK 70

Query: 121 ------FEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRF 174
                     ++   +++RA+S + K  +   ++  Y ++E S+ ++  +  I+ + L  
Sbjct: 71  GDMNNAKLFSDEAANIYERAISTLLKKNM--LLYFAYADYEESRMKYEKVHSIYNRLLAI 128

Query: 175 PSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLL 234
                   Y  + K                               + +  E     + + 
Sbjct: 129 EDIDPTLVYIQYMK-------------------------------FARRAEGIKSGRMIF 157

Query: 235 DPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHD 294
             + +  R++          + Y  +         FE  ++      K  D  +      
Sbjct: 158 KKAREDARTRHHVYVTAALME-YYCSKDKSVAFKIFELGLK------KYGDIPEY--VLA 208

Query: 295 YLSFAEKQGDFDWVVKLYERCLIPCADYPE----FWMRYVDFMESKGGREIASYALDRAT 350
           Y+ +     + +    L+ER L   +  PE     W R++ F  + G          R  
Sbjct: 209 YIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268

Query: 351 QIFLKR--LPVIHLFNARYKEQ 370
             F +        L   RYK  
Sbjct: 269 TAFREEYEGKETALLVDRYKFM 290

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score = 57.0 bits (137), Expect = 1e-08
 Identities = 19/131 (14%), Positives = 44/131 (33%), Gaps = 4/131 (3%)

Query: 61  VYDSFLAEFPLCYGY-WRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMS 119
           +Y+  LA   +     + +Y     R   I     +F++A + A     V+     +   
Sbjct: 121 IYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY 180

Query: 120 TFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKL 179
             +D +   ++F+  L   G           YI++       ++   +F + L   S   
Sbjct: 181 CSKDKSVAFKIFELGLKKYGDIP---EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237

Query: 180 HHYYDSFKKLA 190
               + + +  
Sbjct: 238 EKSGEIWARFL 248

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score = 47.7 bits (113), Expect = 9e-06
 Identities = 32/262 (12%), Positives = 77/262 (29%), Gaps = 34/262 (12%)

Query: 147 MWDKYIEFEISQQRWSSLAQIF-----------VQTLRFPSKKLHHYYDSFKKLAGAWKE 195
           MW KYI++E S    +    +            +  L       +      ++ +    E
Sbjct: 10  MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAE 69

Query: 196 ELECESDSAMEFQSELVLEGEVPAYYKDDET------SSVIKDLLDPSVDLVRSKAIQKY 249
           + +  +      ++  + E  +    K +              +    V  + ++ +   
Sbjct: 70  KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE 129

Query: 250 RFIGEQIYKEASQLDEKINCFENLIR--RPYFHVKPLDDIQLKNWHDYLSFA----EKQG 303
                 +Y +  +   +    ++     +                H Y++ A        
Sbjct: 130 DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR------TRHHVYVTAALMEYYCSK 183

Query: 304 DFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGG----REIASYALDRATQIFLKRLPV 359
           D     K++E  L    D PE+ + Y+D++         R +    L   +    K   +
Sbjct: 184 DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 243

Query: 360 IHLFNARYKEQIGDTSAARAAF 381
              F   ++  IGD ++     
Sbjct: 244 WARF-LAFESNIGDLASILKVE 264

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score = 47.7 bits (113), Expect = 1e-05
 Identities = 40/297 (13%), Positives = 88/297 (29%), Gaps = 58/297 (19%)

Query: 54  DIEMIGLVYDSFLAEFPLCYGYWRKYA--------------DHKARLCSIDKVVEVFERA 99
             + +   Y+  L         W + A              D        D+   ++ERA
Sbjct: 31  ITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERA 90

Query: 100 VQSAT-YSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQ 158
           + +    ++ ++F Y     S       V  ++ R L+    D     ++ +Y++F    
Sbjct: 91  ISTLLKKNMLLYFAYADYEESR-MKYEKVHSIYNRLLAIEDIDPT--LVYIQYMKFARRA 147

Query: 159 QRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVP 218
           +   S   IF +       + H Y  +        +     +   A +     + E  + 
Sbjct: 148 EGIKSGRMIFKKAREDARTRHHVYVTAAL-----MEYYCSKDKSVAFK-----IFELGL- 196

Query: 219 AYYKDDETSSVIKDLLDPSVDLVRSKA-IQKYRFIGEQIYKEASQLDEKINCFENLIRRP 277
             Y D        + +   +D +         R +                 FE ++   
Sbjct: 197 KKYGDIP------EYVLAYIDYLSHLNEDNNTRVL-----------------FERVLTSG 233

Query: 278 YFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFME 334
               +   +I    W  +L+F    GD   ++K+ +R      +  E        ++
Sbjct: 234 SLPPEKSGEI----WARFLAFESNIGDLASILKVEKRRFTAFREEYE-GKETALLVD 285

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 19/122 (15%), Positives = 45/122 (36%), Gaps = 12/122 (9%)

Query: 47  IENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYS 106
           +E  C  D  +   +++  L ++     Y   Y D+ + L   +    +FER + S +  
Sbjct: 177 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236

Query: 107 ----VDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWS 162
                ++W  + +   S   D   + ++ KR  +   ++Y       +         R+ 
Sbjct: 237 PEKSGEIWARFLAF-ESNIGDLASILKVEKRRFTAFREEY----EGKETALLV---DRYK 288

Query: 163 SL 164
            +
Sbjct: 289 FM 290

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 69.5 bits (169), Expect = 5e-12
 Identities = 62/480 (12%), Positives = 122/480 (25%), Gaps = 159/480 (33%)

Query: 8   LESLSAEPNSPV----GFGKQGLEEFIAEGSLDFDE---------WTSLLSEIENSCPDD 54
           L  L    N  +    G GK  +     +  L +           W +L      + P+ 
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWV---ALDVCLSYKVQCKMDFKIFWLNL---KNCNSPET 197

Query: 55  I-EMIGLVY----------DSFLAEFPLCYGYWR-------KYADHKARLCSID-----K 91
           + EM+  +               +   L     +       K   ++  L  +      K
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257

Query: 92  VVEVFE---------RAVQSATY-SVDVWFHYCS-------------------LSMSTFE 122
               F          R  Q   + S     H                      L     +
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317

Query: 123 DPNDVRRLFKRALSFVG---KDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKL 179
            P +V     R LS +    +D L    WD +      +   +++ +  +  L     + 
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLAT--WDNWKHVNCDKL--TTIIESSLNVL--EPAEY 371

Query: 180 HHYYDSF-----------KKLAGAWKEELECESDSAM-EFQSELVLEGEVPAYYKD-DET 226
              +D               L+  W + ++ +    + +     ++E       K   E+
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE-------KQPKES 424

Query: 227 SSVIKDL---LDPSVDLVRS---KAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFH 280
           +  I  +   L   ++   +     +  Y      I K     D      +      Y H
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYN-----IPKTFDSDDLIPPYLDQYF---YSH 476

Query: 281 VKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVD--FMESKGG 338
           +           H  L   E                        F M ++D  F+E K  
Sbjct: 477 I---------GHH--LKNIEHPERMT-----------------LFRMVFLDFRFLEQK-- 506

Query: 339 REIASYALDRATQIFLKRLPVIHLFN--ARYKEQIGDTSAARAAFPESYIDSDSRFIEKV 396
                  +   +  +     +++       YK  I D          + +D    F+ K+
Sbjct: 507 -------IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD----FLPKI 555

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.1 bits (142), Expect = 7e-09
 Identities = 49/349 (14%), Positives = 101/349 (28%), Gaps = 88/349 (25%)

Query: 4   QISNLESLSAEPNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDD--------- 54
           Q+++  S +   +  +      L           DE  SLL +  +  P D         
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTP---------DEVKSLLLKYLDCRPQDLPREVLTTN 326

Query: 55  ---IEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATY------ 105
              + +I       + +    +  W+   +       I+  + V E A     +      
Sbjct: 327 PRRLSIIA----ESIRDGLATWDNWKHV-NCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381

Query: 106 --SVDV--------WFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFE 155
             S  +        WF      +   +    V +L K +L          ++   Y+E +
Sbjct: 382 PPSAHIPTILLSLIWF-----DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436

Query: 156 ISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEEL-----ECE-SDSAMEFQS 209
           +  +   +L +  V     P K           L   +   +       E  +    F+ 
Sbjct: 437 VKLENEYALHRSIVDHYNIP-KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495

Query: 210 ELV----LEGEV-PAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLD 264
             +    LE ++       + + S++  L            ++ Y+     I     + +
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQ----------LKFYK---PYICDNDPKYE 542

Query: 265 EKIN--------CFENLIRRPYFHVKPLDDIQ--LKNWHDYLSF-AEKQ 302
             +N          ENLI   Y      D ++  L    + +   A KQ
Sbjct: 543 RLVNAILDFLPKIEENLICSKY-----TDLLRIALMAEDEAIFEEAHKQ 586

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 3e-06
 Identities = 80/644 (12%), Positives = 176/644 (27%), Gaps = 186/644 (28%)

Query: 151 YIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSE 210
           +++FE  + +                   + Y D       A+ +  +C+     +    
Sbjct: 6   HMDFETGEHQ-------------------YQYKDILSVFEDAFVDNFDCKD--VQDMPKS 44

Query: 211 LVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSK---AIQK---------YRFIGEQIYK 258
           ++ + E+       +  S    L       + SK    +QK         Y+F+   I  
Sbjct: 45  ILSKEEIDHIIMSKDAVSGTLRLFW----TLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100

Query: 259 EASQ----LDEKINCFENLIR-----RPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVV 309
           E  Q        I   + L         Y   +    ++L+          +      V+
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA------LLELRPAKNVL 154

Query: 310 KLY------ERCLIP--CADYPE--------FWMRYVDFMESKGGREIASYALDRATQI- 352
            +       +  +    C  Y          FW+   +         +         QI 
Sbjct: 155 -IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL---NLKNCNSPETVLEMLQKLLYQID 210

Query: 353 --------FLKRLPV-IHLFNARYKEQIGDTSAARAAFPESYI--D--SDSRFIEKVTFK 399
                       + + IH   A  +  +         +    +      +++        
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLL-----KSKPYENCLLVLLNVQNAKAWNAFNLS 265

Query: 400 ANM-----ERRLGNFVAACDTYKEALE------TAAEQRKFHTLPLLYVQFSRLTYTELI 448
             +      +++ +F++A  T   +L+      T  E        LL +++      +L 
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE-----VKSLL-LKYLDCRPQDL- 318

Query: 449 KFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRN 508
              ++      +SI+   I + L +  D  K  + + +  I    L  L+      + R 
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGL-ATWDNWKHVNCDKLTTIIESSLNVLE----PAEYRK 373

Query: 509 AWNQHIKLFPHTVR------------TAYECPGRETKSL--RAFIRGKRESNVASLP--- 551
            +++ + +FP +                          L   + +  + + +  S+P   
Sbjct: 374 MFDR-LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432

Query: 552 ----QPFESE---H-------LMPSASQDKKFSPPEK------------SDSESGDDATS 585
                  E+E   H        +P         PP               + E  +  T 
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492

Query: 586 LPS--------NQKSPLPENHDIRSDGAEVDILLSGEADSSSQDRMQQVPPEAAEQHSQD 637
                       QK        IR D        +  A  S  + +QQ+  +  + +  D
Sbjct: 493 FRMVFLDFRFLEQK--------IRHDS------TAWNASGSILNTLQQL--KFYKPYICD 536

Query: 638 AC-DPEVLSLDLAHQVTNENETVQASEAFSEEDDVQREYEHESK 680
                E L   +   +    E +  S+     D ++     E +
Sbjct: 537 NDPKYERLVNAILDFLPKIEENLICSK---YTDLLRIALMAEDE 577

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 66.4 bits (161), Expect = 3e-11
 Identities = 32/145 (22%), Positives = 42/145 (28%), Gaps = 3/145 (2%)

Query: 881  QAWPMQNMQQQTFASASQSEVPAQPVFYPQAQMSQYPSQSSEQQGLLQSNLAYNQMWQYY 940
            + +P   +Q    A+  Q      P   P A    Y       QG + S     Q     
Sbjct: 7    RVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPS---MGQQQFLT 63

Query: 941  YYQQQQQQQLFLQQQHLQLQQQHLQPLQQQQFVQQQQYQQQHSLYLQQQPQHQQLEQYQM 1000
              Q+Q  QQ+      +     H  PL       Q Q   Q    LQQQ Q      Y  
Sbjct: 64   PAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQ 123

Query: 1001 QQQVQQQDQHPPQQWQLEQRQSEQQ 1025
                  Q+  P  Q       +E  
Sbjct: 124  PSAAMGQNMRPMNQLYPIDLLTELP 148

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 65.2 bits (158), Expect = 9e-11
 Identities = 27/179 (15%), Positives = 43/179 (24%), Gaps = 6/179 (3%)

Query: 850  SRFPSQPLPSQNPQAQQGSQAQSQFLHSLTAQAWPMQNMQQQTFASASQSEVPAQPVFYP 909
            S    +  P    Q  Q +    Q      AQ  P Q+      +       P   V   
Sbjct: 2    SHHKKRVYPQAQLQYGQNATPLQQ-----PAQFMPPQDPAAAGMSYGQMGMPPQGAVPSM 56

Query: 910  QAQMSQYPSQSSEQQGLLQSNLAYNQMWQYYYYQQQQQQQLFLQQQH-LQLQQQHLQPLQ 968
              Q    P+Q    Q + Q+  + N M  +          +  Q    +    Q  Q   
Sbjct: 57   GQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPM 116

Query: 969  QQQFVQQQQYQQQHSLYLQQQPQHQQLEQYQMQQQVQQQDQHPPQQWQLEQRQSEQQIG 1027
                  Q       ++    Q     L               PP     E+     ++ 
Sbjct: 117  AAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELS 175

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 62.2 bits (150), Expect = 7e-10
 Identities = 26/191 (13%), Positives = 52/191 (27%), Gaps = 10/191 (5%)

Query: 826  QHQQRRFSSQRYPRNESGDQMPMNSRFPSQPLPSQNPQAQQGSQAQSQFLHSLTAQAWPM 885
             H++R +   +        Q     + P+Q +P Q+P A   S  Q             +
Sbjct: 3    HHKKRVYPQAQLQYG----QNATPLQQPAQFMPPQDPAAAGMSYGQMGM-----PPQGAV 53

Query: 886  QNMQQQTFASASQSEVPAQPVFYPQAQMSQYPSQSSEQQGLLQSNLAYNQMWQYYYYQQQ 945
             +M QQ F + +Q ++  Q      +    +                          QQQ
Sbjct: 54   PSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQ 113

Query: 946  QQQQLFLQQQHLQLQQQHLQPLQQQQFVQQ-QQYQQQHSLYLQQQPQHQQLEQYQMQQQV 1004
            Q        Q      Q+++P+ Q   +    +     +      P      +  +    
Sbjct: 114  QPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSE 173

Query: 1005 QQQDQHPPQQW 1015
                     + 
Sbjct: 174  LSNASPDYIRS 184

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 57.1 bits (137), Expect = 2e-08
 Identities = 23/144 (15%), Positives = 36/144 (25%), Gaps = 7/144 (4%)

Query: 885  MQNMQQQTFASASQSEVPAQPVFYPQAQMSQYPSQSSEQQGLLQSNLAYNQMWQYYYYQQ 944
            M + +++ +  A       Q     Q      P Q     G+    +            Q
Sbjct: 1    MSHHKKRVYPQAQLQ--YGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQ 58

Query: 945  QQQQQLFLQQQHLQLQQQHLQPLQQQQFVQQQQYQQQHSLYLQQQPQHQQLEQYQMQQQV 1004
            QQ      +Q H Q+ Q                           QPQ        +QQQ 
Sbjct: 59   QQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNA-----YMQPQVPVQMGTPLQQQQ 113

Query: 1005 QQQDQHPPQQWQLEQRQSEQQIGM 1028
            Q        Q      Q+ + +  
Sbjct: 114  QPMAAPAYGQPSAAMGQNMRPMNQ 137

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 54.1 bits (129), Expect = 2e-07
 Identities = 27/124 (21%), Positives = 36/124 (29%), Gaps = 4/124 (3%)

Query: 908  YPQAQMSQYPSQSSEQQGLLQSNLAYNQMWQYYYYQQQQQQQLFLQQQHLQLQQQHLQPL 967
            YPQAQ+    + +  QQ    +     Q          Q             QQQ L P 
Sbjct: 9    YPQAQLQYGQNATPLQQ---PAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPA 65

Query: 968  QQQQFVQ-QQQYQQQHSLYLQQQPQHQQLEQYQMQQQVQQQDQHPPQQWQLEQRQSEQQI 1026
            Q+Q   Q  Q     + ++L   P        Q Q  VQ       QQ  +      Q  
Sbjct: 66   QEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPS 125

Query: 1027 GMSQ 1030
                
Sbjct: 126  AAMG 129

>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A Length = 596

 Score = 47.2 bits (111), Expect = 3e-05
 Identities = 17/137 (12%), Positives = 36/137 (26%), Gaps = 11/137 (8%)

Query: 909  PQAQMSQYPSQSSE-QQGLLQSNLAYNQMWQYYYYQQQQQQQLFLQQQHLQLQQQHLQPL 967
                 +    +    +Q L         + Q     +  Q       + L+ Q       
Sbjct: 4    NHPTAAVVTEKQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTLKSQGDMQDLN 63

Query: 968  QQQQFVQQQQYQQQHSLYLQQQPQHQQLEQ------YQMQQQVQQQDQHPPQQWQLEQR- 1020
               Q V +Q+ QQ   +        + +          M+   +         W+  Q+ 
Sbjct: 64   GNNQSVTRQKMQQLEQMLTALDQMRRSIVSELAGLLSAMEYVQKTLTDEELADWKRRQQI 123

Query: 1021 ---QSEQQIGMSQIEKW 1034
                    I + ++E W
Sbjct: 124  ACIGGPPNICLDRLENW 140

>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens} Length = 683

 Score = 44.5 bits (104), Expect = 2e-04
 Identities = 16/146 (10%), Positives = 49/146 (33%), Gaps = 9/146 (6%)

Query: 898  QSEVPAQPVFYPQAQMSQYPSQSSEQQGLLQSNLAYNQMWQYYYYQQQQQQQLF-LQQQH 956
            ++            Q +    +  E    +++        ++     +  Q  +  + + 
Sbjct: 117  ENAQRFNQAQSGNIQSTVMLDKQKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKT 176

Query: 957  LQLQQQHLQPLQQQQFVQQQQYQQQHSLYLQQQPQ--HQQLEQYQMQQQVQQQDQHPPQQ 1014
            LQ ++     + +    Q+Q   ++  L L  + +    ++ +     ++ Q      + 
Sbjct: 177  LQNREHETNGVAKSDQKQEQLLLKKMYLMLDNKRKEVVHKIIELLNVTELTQNALINDEL 236

Query: 1015 WQLEQRQSEQQIGMS------QIEKW 1034
             + ++RQ    IG        Q++ W
Sbjct: 237  VEWKRRQQSACIGGPPNACLDQLQNW 262

>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 Length = 575

 Score = 43.3 bits (101), Expect = 4e-04
 Identities = 17/126 (13%), Positives = 45/126 (35%), Gaps = 13/126 (10%)

Query: 922  EQQGLLQSNLA-----YNQMWQYYYYQQQQQQQLFLQQQHLQLQQQHLQPLQQQQFVQQQ 976
            ++Q  L S +         +       +  Q +   + + LQ ++     + +    Q+Q
Sbjct: 2    DKQKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQ 61

Query: 977  QYQQQHSLYLQQQPQH--QQLEQYQMQQQVQQQDQHPPQQWQLEQRQSEQQIGMS----- 1029
               ++  L L  + +    ++ +     ++ Q      +  + ++RQ    IG       
Sbjct: 62   LLLKKMYLMLDNKRKEVVHKIIELLNVTELTQNALINDELVEWKRRQQSACIGGPPNACL 121

Query: 1030 -QIEKW 1034
             Q++ W
Sbjct: 122  DQLQNW 127

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592

 Score = 42.2 bits (98), Expect = 9e-04
 Identities = 21/140 (15%), Positives = 62/140 (44%), Gaps = 1/140 (0%)

Query: 888  MQQQTFASASQSEVPAQPVFYPQAQMSQYPSQSSEQQGLLQSNLAYNQMWQYYYYQQQQQ 947
            +Q+         E P + +   +   +   S+ S    +LQ++    +  +    ++ + 
Sbjct: 437  VQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKA 496

Query: 948  QQLFLQQQHL-QLQQQHLQPLQQQQFVQQQQYQQQHSLYLQQQPQHQQLEQYQMQQQVQQ 1006
            +      + L ++Q+++ Q ++Q++   Q+  +Q        + Q  + ++  +  ++Q+
Sbjct: 497  ESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQE 556

Query: 1007 QDQHPPQQWQLEQRQSEQQI 1026
            Q+Q   + +Q E R  + +I
Sbjct: 557  QEQLLKEGFQKESRIMKNEI 576

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1043
d2onda1	308	a.118.8.7 (A:242-549) Cleavage stimulation factor	9e-19
d2onda1	308	a.118.8.7 (A:242-549) Cleavage stimulation factor	7e-11
d2onda1	308	a.118.8.7 (A:242-549) Cleavage stimulation factor	5e-06
d2onda1	308	a.118.8.7 (A:242-549) Cleavage stimulation factor	1e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-05

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 86.2 bits (212), Expect = 9e-19
 Identities = 38/276 (13%), Positives = 75/276 (27%), Gaps = 35/276 (12%)

Query: 283 PLDDIQLKNWHDYLSFAEKQG--------DFDWVVKLYERCLIPCADYPEFWMRYVDFME 334
           P +  Q+  W  Y+ + +               V+  YE+CL+    +P+ W     ++E
Sbjct: 2   PQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLE 61

Query: 335 SKGGREIASY--------------ALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAA 380
                                     +RA    LK+  +++   A Y+E         + 
Sbjct: 62  QSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSI 121

Query: 381 FPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLL----- 435
           +       D              RR     +    +K+A E A  +   +    L     
Sbjct: 122 YNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC 181

Query: 436 --------YVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVE 487
                    +    L     I   ++        + +   +  L+ R         E   
Sbjct: 182 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 241

Query: 488 DISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVRT 523
           +I + +L F    G +  I     +    F      
Sbjct: 242 EIWARFLAFESNIGDLASILKVEKRRFTAFREEYEG 277

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.3 bits (150), Expect = 7e-11
 Identities = 41/320 (12%), Positives = 94/320 (29%), Gaps = 69/320 (21%)

Query: 76  WRKYADH--------KARLCSIDKVVEVFERAVQSATYSVDVWFHY-------------C 114
           W+KY           + +     +V+  +E+ +    +  D+W+                
Sbjct: 11  WKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEK 70

Query: 115 SLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRF 174
               +     ++   +++RA+S + K      ++  Y ++E S+ ++  +  I+ + L  
Sbjct: 71  GDMNNAKLFSDEAANIYERAISTLLKK--NMLLYFAYADYEESRMKYEKVHSIYNRLLAI 128

Query: 175 PSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLL 234
                   Y  + K A   +                                        
Sbjct: 129 EDIDPTLVYIQYMKFARRAEGIKSGRM--------------------------------- 155

Query: 235 DPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHD 294
                 +  KA +  R     +Y  A+ ++   +  +++  + +           +    
Sbjct: 156 ------IFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLA 208

Query: 295 YLSFAEKQGDFDWVVKLYERCLIPCADYPE----FWMRYVDFMESKGGREIASYALDRAT 350
           Y+ +     + +    L+ER L   +  PE     W R++ F  + G          R  
Sbjct: 209 YIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268

Query: 351 QIF--LKRLPVIHLFNARYK 368
             F          L   RYK
Sbjct: 269 TAFREEYEGKETALLVDRYK 288

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.3 bits (111), Expect = 5e-06
 Identities = 43/305 (14%), Positives = 94/305 (30%), Gaps = 58/305 (19%)

Query: 35  LDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADH------------ 82
           + +++   L +E +       + +   Y+  L         W + A +            
Sbjct: 15  IQWEKSNPLRTEDQTL---ITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKG 71

Query: 83  --KARLCSIDKVVEVFERAVQSA-TYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVG 139
                    D+   ++ERA+ +    ++ ++F Y     S       V  ++ R L+   
Sbjct: 72  DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM-KYEKVHSIYNRLLAIED 130

Query: 140 KDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELEC 199
            D     ++ +Y++F    +   S   IF +       + H Y         A   E  C
Sbjct: 131 IDP--TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT-------AALMEYYC 181

Query: 200 ESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKE 259
             D ++ F+                             + L +   I +Y          
Sbjct: 182 SKDKSVAFK--------------------------IFELGLKKYGDIPEYVLAYIDYLSH 215

Query: 260 ASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPC 319
            ++ +     FE ++       +   +I    W  +L+F    GD   ++K+ +R     
Sbjct: 216 LNEDNNTRVLFERVLTSGSLPPEKSGEI----WARFLAFESNIGDLASILKVEKRRFTAF 271

Query: 320 ADYPE 324
            +  E
Sbjct: 272 REEYE 276

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.0 bits (100), Expect = 1e-04
 Identities = 35/303 (11%), Positives = 87/303 (28%), Gaps = 29/303 (9%)

Query: 147 MWDKYIEFEISQQRWSSLAQIFVQTLRFPSKK----LHHYYDSFKKLAGAWKEELECESD 202
           MW KYI++E S    +    +  + + F  ++    L H+ D + + A   ++  +  ++
Sbjct: 10  MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAE 69

Query: 203 SAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQ 262
                 ++L  +     Y                       +AI         +Y   + 
Sbjct: 70  KGDMNNAKLFSDEAANIY----------------------ERAISTLLKKNMLLYFAYAD 107

Query: 263 LDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADY 322
            +E    +E +       +   D      +  Y+ FA +         ++++        
Sbjct: 108 YEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR 167

Query: 323 PEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFP 382
              ++            +  ++ +          +P   L    Y   + + +  R  F 
Sbjct: 168 HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFE 227

Query: 383 ESY-IDSDSRFIEKVTFKA--NMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQF 439
                 S         +      E  +G+  +     K       E+ +     LL  ++
Sbjct: 228 RVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALLVDRY 287

Query: 440 SRL 442
             +
Sbjct: 288 KFM 290

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 2e-05
 Identities = 47/364 (12%), Positives = 97/364 (26%), Gaps = 22/364 (6%)

Query: 62  YDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFH----YCSLS 117
                 + P   G     +    +   +D+       A++      + + +    Y    
Sbjct: 22  CMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 81

Query: 118 MSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSK 177
                  +    L  +     G   L   +          Q   S+L             
Sbjct: 82  QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDL 141

Query: 178 KLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPS 237
                     + A A   +      +     S L                      LDP+
Sbjct: 142 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN 201

Query: 238 VDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLS 297
                   +  Y  +G  + KEA   D  +  +   +     H             +   
Sbjct: 202 F-------LDAYINLG-NVLKEARIFDRAVAAYLRALSLSPNHAVV--------HGNLAC 245

Query: 298 FAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRL 357
              +QG  D  +  Y R +     +P+ +    + ++ KG    A    + A ++     
Sbjct: 246 VYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA 305

Query: 358 PVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYK 417
             ++      +EQ G+   A   +    ++    F    +  A++ ++ G    A   YK
Sbjct: 306 DSLNNLANIKREQ-GNIEEAVRLY-RKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 363

Query: 418 EALE 421
           EA+ 
Sbjct: 364 EAIR 367

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1043
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	100.0
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	100.0
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.97
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.96
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.89
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.85
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.66
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.66
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.6
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.57
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.52
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.52
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.45
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.34
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.04
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.01
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.98
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.96
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.95
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.9
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.89
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.81
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.8
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.79
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.75
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.74
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.73
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.73
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.6
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.57
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.49
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.44
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.41
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.4
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.36
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.33
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.32
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.31
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.31
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.29
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.27
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.25
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.24
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.14
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.08
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.78
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.37
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.26
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.1
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	96.76
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	96.76
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.57
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	92.08
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	84.3

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.2e-34  Score=221.94  Aligned_cols=193  Identities=16%  Similarity=0.153  Sum_probs=132.3

Q ss_pred             HHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf             7999999998604-999289999999999980996899999999999873026068999999999808999999999966
Q 001619          306 DWVVKLYERCLIP-CADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPES  384 (1043)
Q Consensus       306 e~v~~lyerAi~~-~~~~~~LWl~yA~~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~a~~E~~~g~~e~Ar~il~ra  384 (1043)
                      +.++.+|+||+.. +|....+|+.|+.+++..|+.+.|+.+|++++.....+...+|+.++.++.+.|+++.||.+|.++
T Consensus        81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a  160 (308)
T d2onda1          81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA  160 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             99999999999874998799999999999861338999999999998715786999999999999827868899999999


Q ss_pred             HHCCCHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf             417881259999999999998-0999999999999999987410488617999999999999999999980897649999
Q 001619          385 YIDSDSRFIEKVTFKANMERR-LGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIV  463 (1043)
Q Consensus       385 l~~~~~~~~~iw~~~a~lE~~-~G~~e~Ar~iyekal~~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~ie~a  463 (1043)
                      +.. .+....+|+.++.++.. .|+.+.|+.+|++++..      +|..+.+|        ..|++|+...|+   +++|
T Consensus       161 l~~-~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~------~p~~~~~w--------~~y~~~~~~~g~---~~~a  222 (308)
T d2onda1         161 RED-ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK------YGDIPEYV--------LAYIDYLSHLNE---DNNT  222 (308)
T ss_dssp             HTS-TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH------HTTCHHHH--------HHHHHHHHTTCC---HHHH
T ss_pred             HHH-CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------HHHHHHHH--------HHHHHHHHHCCC---HHHH
T ss_conf             980-88867999999999987655778999999999986------10038899--------999999998698---6899


Q ss_pred             HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf             9999998603997432489565999999999999980999999999999996289875
Q 001619          464 DAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTV  521 (1043)
Q Consensus       464 R~llerAl~~~p~~~~~l~~~~~~~i~~lwl~fe~~~G~~~~a~~~~~ra~k~~p~~~  521 (1043)
                      |.+|++|+..+|.+     +++...+|..|+.||+.+|+++.+.++++|+.+.||...
T Consensus       223 R~~fe~ai~~~~~~-----~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~  275 (308)
T d2onda1         223 RVLFERVLTSGSLP-----PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY  275 (308)
T ss_dssp             HHHHHHHHHSSSSC-----GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHHHCCCC-----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
T ss_conf             99999999827898-----689999999999999984999999999999998771102

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.5e-34  Score=223.36  Aligned_cols=240  Identities=12%  Similarity=0.196  Sum_probs=200.6

Q ss_pred             CHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC-------------CCHHHHHHH
Q ss_conf             9899999999999809--------9989999999999833899999999999997208-------------996899999
Q 001619           72 CYGYWRKYADHKARLC--------SIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTF-------------EDPNDVRRL  130 (1043)
Q Consensus        72 s~~lW~~yi~~e~~~~--------~~e~a~~lfeRAL~~~p~s~~LW~~Y~~~~~~~~-------------~~~e~ar~v  130 (1043)
                      ++++|++|+++|..++        ...+++.+|+|||..+|.+++||+.|++|+....             +..+.++.+
T Consensus         7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i   86 (308)
T d2onda1           7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI   86 (308)
T ss_dssp             HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHH
T ss_conf             99999999999876865433220369999999999998777999999999999987073688777876310245999999


Q ss_pred             HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999961987773899999999999814556599999998617870189999999999987787653200245779998
Q 001619          131 FKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSE  210 (1043)
Q Consensus       131 ferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~kiy~RaL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e  210 (1043)
                      |+||+...+.  .+..||..|+.++...+..+.++.+|.++|...+.+                                
T Consensus        87 ~~ral~~~~p--~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~--------------------------------  132 (308)
T d2onda1          87 YERAISTLLK--KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID--------------------------------  132 (308)
T ss_dssp             HHHHHTTTTT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC--------------------------------
T ss_pred             HHHHHHHCCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC--------------------------------
T ss_conf             9999987499--879999999999986133899999999999871578--------------------------------


Q ss_pred             HHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             63216666676610224778742187513577799999988779898988999999999999710347778999957799
Q 001619          211 LVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLK  290 (1043)
Q Consensus       211 ~i~~~~l~~~~~~~e~~~~l~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~  290 (1043)
                                                                                                   ...
T Consensus       133 -----------------------------------------------------------------------------~~~  135 (308)
T d2onda1         133 -----------------------------------------------------------------------------PTL  135 (308)
T ss_dssp             -----------------------------------------------------------------------------THH
T ss_pred             -----------------------------------------------------------------------------HHH
T ss_conf             -----------------------------------------------------------------------------699


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             999999999982996799999999860499928999999999998-0996899999999999873026068999999999
Q 001619          291 NWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMES-KGGREIASYALDRATQIFLKRLPVIHLFNARYKE  369 (1043)
Q Consensus       291 ~W~~yi~~e~~~g~~e~v~~lyerAi~~~~~~~~LWl~yA~~~e~-~g~~e~Ar~ilerA~~~~~~~~p~iwl~~a~~E~  369 (1043)
                      +|..|+.++.+.++++.++.+|++|+..++....+|+.+|.+++. .|+.+.|+.+|++|+.. .|..+.+|+.|++|+.
T Consensus       136 ~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~  214 (308)
T d2onda1         136 VYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLS  214 (308)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_conf             999999999982786889999999998088867999999999987655778999999999986-1003889999999999


Q ss_pred             HHCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             80899999999996641788---1259999999999998099999999999999998
Q 001619          370 QIGDTSAARAAFPESYIDSD---SRFIEKVTFKANMERRLGNFVAACDTYKEALETA  423 (1043)
Q Consensus       370 ~~g~~e~Ar~il~ral~~~~---~~~~~iw~~~a~lE~~~G~~e~Ar~iyekal~~~  423 (1043)
                      ..|++++||.+|++|+....   .+...+|..|+.||+..|+++.++++++++.+..
T Consensus       215 ~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~  271 (308)
T d2onda1         215 HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF  271 (308)
T ss_dssp             TTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf             869868999999999982789868999999999999998499999999999999877

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3e-24  Score=161.65  Aligned_cols=361  Identities=14%  Similarity=0.121  Sum_probs=235.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             91899999999999969999899999999999809998999999999983389999999999999720899689999999
Q 001619           53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFK  132 (1043)
Q Consensus        53 ~~~~~ar~vyeraL~~~P~s~~lW~~yi~~e~~~~~~e~a~~lfeRAL~~~p~s~~LW~~Y~~~~~~~~~~~e~ar~vfe  132 (1043)
                      |+++++..+|+++++.+|.++..|..++......+++++|..+|++|++..|.+.+.|..++...... +++++|...|.
T Consensus        13 G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~-g~~~~A~~~~~   91 (388)
T d1w3ba_          13 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKER-GQLQEAIEHYR   91 (388)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-CCCCCCCCCCC
T ss_conf             99999999999999868998999999999999869999999999999985999899999999996420-00222222222


Q ss_pred             HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99996198777389999999999981455659999999861787018999999999998778765320024577999863
Q 001619          133 RALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELV  212 (1043)
Q Consensus       133 rAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~kiy~RaL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i  212 (1043)
                      +++...+..   ...+...................+......................                      
T Consensus        92 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------  146 (388)
T d1w3ba_          92 HALRLKPDF---IDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK----------------------  146 (388)
T ss_dssp             HHHHHCTTC---HHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHH----------------------
T ss_pred             CCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----------------------
T ss_conf             121122222---2222222222222222222222211122222222222222222221----------------------


Q ss_pred             HCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf             21666667661022477874218751357779999998877989898899999999999971034777899995779999
Q 001619          213 LEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNW  292 (1043)
Q Consensus       213 ~~~~l~~~~~~~e~~~~l~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W  292 (1043)
                                                                    ...........++..+.        .+|.....|
T Consensus       147 ----------------------------------------------~~~~~~~~~~~~~~~~~--------~~~~~~~~~  172 (388)
T d1w3ba_         147 ----------------------------------------------ALGRLEEAKACYLKAIE--------TQPNFAVAW  172 (388)
T ss_dssp             ----------------------------------------------TTSCHHHHHHHHHHHHH--------HCTTCHHHH
T ss_pred             ----------------------------------------------CCCHHHHHHHHHHHHHC--------CCCCHHHHH
T ss_conf             ----------------------------------------------10001356788887402--------586106899


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf             99999999829967999999998604999289999999999980996899999999999873026068999999999808
Q 001619          293 HDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIG  372 (1043)
Q Consensus       293 ~~yi~~e~~~g~~e~v~~lyerAi~~~~~~~~LWl~yA~~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~a~~E~~~g  372 (1043)
                      ..++.+....++.+.+...+++++...|.....|..++..+...|++++|...|+++... .+..+..|...+....+.|
T Consensus       173 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~  251 (388)
T d1w3ba_         173 SNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL-SPNHAVVHGNLACVYYEQG  251 (388)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTT
T ss_pred             HHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCC
T ss_conf             863630102471999999999999849464999999715522005299999999985777-5547999999999999878


Q ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999996641788125999999999999809999999999999999874104886179999999999999999999
Q 001619          373 DTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTM  452 (1043)
Q Consensus       373 ~~e~Ar~il~ral~~~~~~~~~iw~~~a~lE~~~G~~e~Ar~iyekal~~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~  452 (1043)
                      +++.|...|++++.. .|+...+|...+.+....|+++.|...|++++..      .|..+..+...+.        ...
T Consensus       252 ~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~--------~~~  316 (388)
T d1w3ba_         252 LIDLAIDTYRRAIEL-QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL------CPTHADSLNNLAN--------IKR  316 (388)
T ss_dssp             CHHHHHHHHHHHHHT-CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH------CTTCHHHHHHHHH--------HHH
T ss_pred             CHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC------CCCCCHHHHHHHH--------HHH
T ss_conf             999999999999984-9998999999999999748799999999865404------8730010157999--------999


Q ss_pred             HHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf             808976499999999998603997432489565999999999999980999999999999996289875
Q 001619          453 VHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTV  521 (1043)
Q Consensus       453 ~~g~~~~ie~aR~llerAl~~~p~~~~~l~~~~~~~i~~lwl~fe~~~G~~~~a~~~~~ra~k~~p~~~  521 (1043)
                      ..|.   .+.|...|++++...|+.         ..++..........|+.+.|...+.++++..|...
T Consensus       317 ~~~~---~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~  373 (388)
T d1w3ba_         317 EQGN---IEEAVRLYRKALEVFPEF---------AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA  373 (388)
T ss_dssp             TTTC---HHHHHHHHHHHTTSCTTC---------HHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCH
T ss_pred             HCCC---HHHHHHHHHHHHHHCCCC---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
T ss_conf             8789---999999999999868898---------99999999999985999999999999997099989

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.9e-24  Score=159.89  Aligned_cols=356  Identities=13%  Similarity=0.122  Sum_probs=259.1

Q ss_pred             CCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             41787999999398899999999999981199918999999999999699998999999999998099989999999999
Q 001619           21 FGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAV  100 (1043)
Q Consensus        21 ~~~~~le~~i~~nP~d~~~W~~~i~~~e~~~~~~~~~ar~vyeraL~~~P~s~~lW~~yi~~e~~~~~~e~a~~lfeRAL  100 (1043)
                      .-+..|++.+..+|.+..+|..++..+...  ++++++...|+++++..|.+...|...+......|++++|...|.+++
T Consensus        17 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~   94 (388)
T d1w3ba_          17 AAERHCMQLWRQEPDNTGVLLLLSSIHFQC--RRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHAL   94 (388)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             999999999986899899999999999986--999999999999998599989999999999642000222222222121


Q ss_pred             HHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf             83389999999999999720899689999999999961987773899999999999814556599999998617870189
Q 001619          101 QSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLH  180 (1043)
Q Consensus       101 ~~~p~s~~LW~~Y~~~~~~~~~~~e~ar~vferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~kiy~RaL~~p~~~l~  180 (1043)
                      ...+.....+.......... .........+.........   ....+...............+...+.+.+...+....
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (388)
T d1w3ba_          95 RLKPDFIDGYINLAAALVAA-GDMEGAVQAYVSALQYNPD---LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV  170 (388)
T ss_dssp             HHCTTCHHHHHHHHHHHHHH-SCSSHHHHHHHHHHHHCTT---CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHH
T ss_conf             12222222222222222222-2222222221112222222---2222222222221100013567888874025861068


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999998778765320024577999863216666676610224778742187513577799999988779898988
Q 001619          181 HYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEA  260 (1043)
Q Consensus       181 ~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~l~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a  260 (1043)
                      ....                                             +...                       +...
T Consensus       171 ~~~~---------------------------------------------l~~~-----------------------~~~~  182 (388)
T d1w3ba_         171 AWSN---------------------------------------------LGCV-----------------------FNAQ  182 (388)
T ss_dssp             HHHH---------------------------------------------HHHH-----------------------HHTT
T ss_pred             HHHH---------------------------------------------HCCC-----------------------CCCC
T ss_conf             9986---------------------------------------------3630-----------------------1024


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf             99999999999971034777899995779999999999998299679999999986049992899999999999809968
Q 001619          261 SQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGRE  340 (1043)
Q Consensus       261 ~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~v~~lyerAi~~~~~~~~LWl~yA~~~e~~g~~e  340 (1043)
                      .....+...+++++.        .+|.....|..++..+...|+++.+...|++++...+.....|...+..+...|+++
T Consensus       183 ~~~~~A~~~~~~al~--------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  254 (388)
T d1w3ba_         183 GEIWLAIHHFEKAVT--------LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLID  254 (388)
T ss_dssp             TCHHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             CCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf             719999999999998--------494649999997155220052999999999857775547999999999999878999


Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             99999999999873026068999999999808999999999966417881259999999999998099999999999999
Q 001619          341 IASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEAL  420 (1043)
Q Consensus       341 ~Ar~ilerA~~~~~~~~p~iwl~~a~~E~~~g~~e~Ar~il~ral~~~~~~~~~iw~~~a~lE~~~G~~e~Ar~iyekal  420 (1043)
                      +|...|++++.. .|+.+.+|...+.+....|+++.|...|.+++.. .+....+|...+.+....|+++.|.+.|++++
T Consensus       255 ~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  332 (388)
T d1w3ba_         255 LAIDTYRRAIEL-QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKAL  332 (388)
T ss_dssp             HHHHHHHHHHHT-CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             999999999984-9998999999999999748799999999865404-87300101579999998789999999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf             998741048861799999999999999999998089764999999999986039974
Q 001619          421 ETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDV  477 (1043)
Q Consensus       421 ~~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~ie~aR~llerAl~~~p~~  477 (1043)
                      +.      .|..+..|...+.        .....|.   .+.|...|++|+...|+.
T Consensus       333 ~~------~p~~~~~~~~la~--------~~~~~g~---~~~A~~~~~~al~l~P~~  372 (388)
T d1w3ba_         333 EV------FPEFAAAHSNLAS--------VLQQQGK---LQEALMHYKEAIRISPTF  372 (388)
T ss_dssp             TS------CTTCHHHHHHHHH--------HHHTTTC---CHHHHHHHHHHHTTCTTC
T ss_pred             HH------CCCCHHHHHHHHH--------HHHHCCC---HHHHHHHHHHHHHHCCCC
T ss_conf             86------8898999999999--------9998599---999999999999709998

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.4e-19  Score=131.71  Aligned_cols=254  Identities=12%  Similarity=0.014  Sum_probs=144.3

Q ss_pred             CCC-CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf             988-9999999999998119991899999999999969999899999999999809998999999999983389999999
Q 001619           33 GSL-DFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWF  111 (1043)
Q Consensus        33 nP~-d~~~W~~~i~~~e~~~~~~~~~ar~vyeraL~~~P~s~~lW~~yi~~e~~~~~~e~a~~lfeRAL~~~p~s~~LW~  111 (1043)
                      ||+ +...|......+...  |+++.+...|+++++.+|.++..|..++......+++++|...|.+|+...|.+.+.|.
T Consensus        14 n~~~~~~~~~~~g~~~~~~--g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   91 (323)
T d1fcha_          14 NPLRDHPQPFEEGLRRLQE--GDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALM   91 (323)
T ss_dssp             CTTTTCSSHHHHHHHHHHT--TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             9986539999999999985--99999999999999868998999999999999837758899999851002222222222


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf             99999972089968999999999996198777389999999999981455659999999861787018999999999998
Q 001619          112 HYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAG  191 (1043)
Q Consensus       112 ~Y~~~~~~~~~~~e~ar~vferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~kiy~RaL~~p~~~l~~~~~~y~~~~~  191 (1043)
                      .++...... +..+.+...|++++...|....   ++........ .           ..+..                 
T Consensus        92 ~la~~~~~~-~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~~~-~-----------~~~~~-----------------  138 (323)
T d1fcha_          92 ALAVSFTNE-SLQRQACEILRDWLRYTPAYAH---LVTPAEEGAG-G-----------AGLGP-----------------  138 (323)
T ss_dssp             HHHHHHHHT-TCHHHHHHHHHHHHHTSTTTGG---GCC------------------------------------------
T ss_pred             CCCCCCCCC-CCCCCCCCCHHHHHHHCCCHHH---HHHHHHHHHH-H-----------CCCCC-----------------
T ss_conf             222222222-2112111000267773610678---8876640000-0-----------00100-----------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             77876532002457799986321666667661022477874218751357779999998877989898899999999999
Q 001619          192 AWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFE  271 (1043)
Q Consensus       192 ~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~l~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE  271 (1043)
                                                  .....      .       .                 +............|+
T Consensus       139 ----------------------------~~~~~------~-------~-----------------~~~~~~~~~a~~~~~  160 (323)
T d1fcha_         139 ----------------------------SKRIL------G-------S-----------------LLSDSLFLEVKELFL  160 (323)
T ss_dssp             ------------------------------CTT------H-------H-----------------HHHHHHHHHHHHHHH
T ss_pred             ----------------------------CHHHH------H-------H-----------------HHHHHHHHHHHHHHH
T ss_conf             ----------------------------00147------8-------8-----------------887657999999999


Q ss_pred             HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             97103477789999577999999999999829967999999998604999289999999999980996899999999999
Q 001619          272 NLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQ  351 (1043)
Q Consensus       272 ~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~v~~lyerAi~~~~~~~~LWl~yA~~~e~~g~~e~Ar~ilerA~~  351 (1043)
                      +++...      .+..+..+|...+.+....|+++.++..|++++...|....+|...+..+...|++++|...|+++++
T Consensus       161 ~al~~~------p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  234 (323)
T d1fcha_         161 AAVRLD------PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALE  234 (323)
T ss_dssp             HHHHHS------TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHH------HCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             999971------30122211103688888888775500211122222222211101333012211110137888778998


Q ss_pred             HHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf             87302606899999999980899999999996641
Q 001619          352 IFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYI  386 (1043)
Q Consensus       352 ~~~~~~p~iwl~~a~~E~~~g~~e~Ar~il~ral~  386 (1043)
                      . .|+.+.+|...+......|+++.|+..|.+++.
T Consensus       235 ~-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~  268 (323)
T d1fcha_         235 L-QPGYIRSRYNLGISCINLGAHREAVEHFLEALN  268 (323)
T ss_dssp             H-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             H-HHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             8-432499999999999987899999999999997

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=6.8e-20  Score=135.04  Aligned_cols=262  Identities=14%  Similarity=0.028  Sum_probs=199.0

Q ss_pred             HHHHHHHHCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             99999996999----98999999999998099989999999999833899999999999997208996899999999999
Q 001619           61 VYDSFLAEFPL----CYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALS  136 (1043)
Q Consensus        61 vyeraL~~~P~----s~~lW~~yi~~e~~~~~~e~a~~lfeRAL~~~p~s~~LW~~Y~~~~~~~~~~~e~ar~vferAL~  136 (1043)
                      .|++++.....    +..-|...+....+.|++++|..+|+++++..|.+++.|..++...... ++++.|...|++|+.
T Consensus         3 ~~~~~~~~~~~n~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~-~~~~~A~~~~~~al~   81 (323)
T d1fcha_           3 TYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAEN-EQELLAISALRRCLE   81 (323)
T ss_dssp             HHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHC
T ss_conf             3577675240599865399999999999859999999999999986899899999999999983-775889999985100


Q ss_pred             HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             61987773899999999999814556599999998617870189999999999987787653200245779998632166
Q 001619          137 FVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGE  216 (1043)
Q Consensus       137 ~lp~~~~s~~IW~~yi~fe~~~~~~e~a~kiy~RaL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~  216 (1043)
                      ..|.   ....|...+......+.++.+...|.+++.+.......                                   
T Consensus        82 ~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----------------------------------  123 (323)
T d1fcha_          82 LKPD---NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHL-----------------------------------  123 (323)
T ss_dssp             HCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGG-----------------------------------
T ss_pred             CCCC---CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHH-----------------------------------
T ss_conf             2222---22222222222222221121110002677736106788-----------------------------------


Q ss_pred             CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             66676610224778742187513577799999988779898988999999999999710347778999957799999999
Q 001619          217 VPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYL  296 (1043)
Q Consensus       217 l~~~~~~~e~~~~l~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi  296 (1043)
                          ........                                  ....                      .......+
T Consensus       124 ----~~~~~~~~----------------------------------~~~~----------------------~~~~~~~~  143 (323)
T d1fcha_         124 ----VTPAEEGA----------------------------------GGAG----------------------LGPSKRIL  143 (323)
T ss_dssp             ----CC-----------------------------------------------------------------------CTT
T ss_pred             ----HHHHHHHH----------------------------------HHCC----------------------CCCCHHHH
T ss_conf             ----87664000----------------------------------0000----------------------10000147


Q ss_pred             HHHHHCCCHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCH
Q ss_conf             9999829967999999998604999--28999999999998099689999999999987302606899999999980899
Q 001619          297 SFAEKQGDFDWVVKLYERCLIPCAD--YPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDT  374 (1043)
Q Consensus       297 ~~e~~~g~~e~v~~lyerAi~~~~~--~~~LWl~yA~~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~a~~E~~~g~~  374 (1043)
                      ......+....+...|++++...|.  ...+|...+..+...|+++.|...|++++.. .|+.+.+|...+.+....|++
T Consensus       144 ~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~  222 (323)
T d1fcha_         144 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-RPNDYLLWNKLGATLANGNQS  222 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCHHHHHHCCCCCCCC
T ss_conf             8888765799999999999997130122211103688888888775500211122222-222211101333012211110


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             9999999966417881259999999999998099999999999999998
Q 001619          375 SAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETA  423 (1043)
Q Consensus       375 e~Ar~il~ral~~~~~~~~~iw~~~a~lE~~~G~~e~Ar~iyekal~~~  423 (1043)
                      +.|...|.+++.. .|.....|...+.+....|+++.|+..|++||++.
T Consensus       223 ~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~  270 (323)
T d1fcha_         223 EEAVAAYRRALEL-QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ  270 (323)
T ss_dssp             HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf             1378887789988-43249999999999998789999999999999709

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=2.7e-15  Score=106.97  Aligned_cols=137  Identities=12%  Similarity=0.080  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHCCCCHH
Q ss_conf             999999999811999189999999999996999989999999999980----------9998999999999983389999
Q 001619           39 EWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARL----------CSIDKVVEVFERAVQSATYSVD  108 (1043)
Q Consensus        39 ~W~~~i~~~e~~~~~~~~~ar~vyeraL~~~P~s~~lW~~yi~~e~~~----------~~~e~a~~lfeRAL~~~p~s~~  108 (1043)
                      .+..++......  +-.+++..+++++|+.+|..+..|..........          +.++++..+|++++...|.+..
T Consensus        31 ~~~~~~~~~~~~--~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~  108 (334)
T d1dcea1          31 ATQAVFQKRQAG--ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG  108 (334)
T ss_dssp             HHHHHHHHHHTT--CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHCC--CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf             999999998656--566999999999999887858999999999999765003477877899999999999986888679


Q ss_pred             HHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf             9999999997208-9968999999999996198777389999-9999999814556599999998617870189
Q 001619          109 VWFHYCSLSMSTF-EDPNDVRRLFKRALSFVGKDYLCHTMWD-KYIEFEISQQRWSSLAQIFVQTLRFPSKKLH  180 (1043)
Q Consensus       109 LW~~Y~~~~~~~~-~~~e~ar~vferAL~~lp~~~~s~~IW~-~yi~fe~~~~~~e~a~kiy~RaL~~p~~~l~  180 (1043)
                      +|...+....... .+.+.+...+++|+..-|.   ....|. .........+..+.+...|++++.+.+.+.+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~---~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~  179 (334)
T d1dcea1         109 TWHHRCWLLSRLPEPNWARELELCARFLEADER---NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS  179 (334)
T ss_dssp             HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHH
T ss_conf             898864899884304289999999999855921---21111057899987445528999999998871898799

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=4e-13  Score=93.67  Aligned_cols=142  Identities=13%  Similarity=0.108  Sum_probs=102.6

Q ss_pred             HHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCCCCHH
Q ss_conf             9939889999999999998119991899999999999969999899999999999809-998999999999983389999
Q 001619           30 IAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLC-SIDKVVEVFERAVQSATYSVD  108 (1043)
Q Consensus        30 i~~nP~d~~~W~~~i~~~e~~~~~~~~~ar~vyeraL~~~P~s~~lW~~yi~~e~~~~-~~e~a~~lfeRAL~~~p~s~~  108 (1043)
                      |..+|...+++..+...+.+.  +..+++..+|+++++.+|.++..|..........+ +++++...|+++++..|.+..
T Consensus        36 I~~~p~~~~a~~~~~~~~~~~--e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~  113 (315)
T d2h6fa1          36 IIYSDKFRDVYDYFRAVLQRD--ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ  113 (315)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             226977999999999999958--866999999999998798876999999999998376799999999999988774226


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             999999999720899689999999999961987773899999999999814556599999998617870
Q 001619          109 VWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSK  177 (1043)
Q Consensus       109 LW~~Y~~~~~~~~~~~e~ar~vferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~kiy~RaL~~p~~  177 (1043)
                      +|...+...... +++++|...|++|+..-|.   ....|...+......+.++.+...|.++|.+.+.
T Consensus       114 a~~~~~~~~~~l-~~~~eAl~~~~kal~~dp~---n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~  178 (315)
T d2h6fa1         114 VWHHRRVLVEWL-RDPSQELEFIADILNQDAK---NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR  178 (315)
T ss_dssp             HHHHHHHHHHHH-TCCTTHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             898875888850-5378899887555432100---4688998877888888667899999999987974

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=1.4e-14  Score=102.63  Aligned_cols=259  Identities=7%  Similarity=-0.051  Sum_probs=154.3

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             9989999999999833899999999999997208---------9968999999999996198777389999999999981
Q 001619           88 SIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTF---------EDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQ  158 (1043)
Q Consensus        88 ~~e~a~~lfeRAL~~~p~s~~LW~~Y~~~~~~~~---------~~~e~ar~vferAL~~lp~~~~s~~IW~~yi~fe~~~  158 (1043)
                      ..++|..+++++|...|.+...|.....++....         +.++.+...|+++++.-|.   +..+|...+......
T Consensus        44 ~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk---~~~~~~~~~~~~~~~  120 (334)
T d1dcea1          44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK---SYGTWHHRCWLLSRL  120 (334)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHH
T ss_conf             66999999999999887858999999999999765003477877899999999999986888---679898864899884


Q ss_pred             H--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             4--55659999999861787018999999999998778765320024577999863216666676610224778742187
Q 001619          159 Q--RWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDP  236 (1043)
Q Consensus       159 ~--~~e~a~kiy~RaL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~l~~~~~~  236 (1043)
                      +  +++.+...+.+++..........+..    ....                                           
T Consensus       121 ~~~~~~~a~~~~~~al~~~~~~~~~~~~~----~~~~-------------------------------------------  153 (334)
T d1dcea1         121 PEPNWARELELCARFLEADERNFHCWDYR----RFVA-------------------------------------------  153 (334)
T ss_dssp             SSCCHHHHHHHHHHHHHHCTTCHHHHHHH----HHHH-------------------------------------------
T ss_pred             CCCCHHHHHHHHHHHHHHCCHHHHHHHHH----HHHH-------------------------------------------
T ss_conf             30428999999999985592121111057----8999-------------------------------------------


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             51357779999998877989898899999999999971034777899995779999999999998299679999999986
Q 001619          237 SVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCL  316 (1043)
Q Consensus       237 ~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~v~~lyerAi  316 (1043)
                                          +........++..++++|.        .+|.+...|..++..+...|+++.+...|.+++
T Consensus       154 --------------------~~~~~~~~~Al~~~~~~i~--------~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~  205 (334)
T d1dcea1         154 --------------------AQAAVAPAEELAFTDSLIT--------RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPE  205 (334)
T ss_dssp             --------------------HHTCCCHHHHHHHHHTTTT--------TTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCH
T ss_pred             --------------------HHHCCCCHHHHHHHHHHHH--------CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             --------------------8744552899999999887--------189879999999999998268898999887767


Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             04999289999999999980996899999999999873026068999999999808999999999966417881259999
Q 001619          317 IPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKV  396 (1043)
Q Consensus       317 ~~~~~~~~LWl~yA~~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~a~~E~~~g~~e~Ar~il~ral~~~~~~~~~iw  396 (1043)
                      ...+....++..+.    ..+..+.+...|.+++.. .+.....+...+......++++.|...+.+++. ..|....+|
T Consensus       206 ~~~~~~~~~~~~~~----~l~~~~~a~~~~~~~l~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~p~~~~~~  279 (334)
T d1dcea1         206 NVLLKELELVQNAF----FTDPNDQSAWFYHRWLLG-RAEPLFRCELSVEKSTVLQSELESCKELQELEP-ENKWCLLTI  279 (334)
T ss_dssp             HHHHHHHHHHHHHH----HHCSSCSHHHHHHHHHHS-CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----HHCCHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHH
T ss_conf             76899999999998----824414889999988771-866056788799999998669999999998876-291379999


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf             9999999980999999999999999987410488617999
Q 001619          397 TFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLY  436 (1043)
Q Consensus       397 ~~~a~lE~~~G~~e~Ar~iyekal~~~~~~~~~p~~~~l~  436 (1043)
                      ...+....+.|+++.|.+.|++++++      +|.....|
T Consensus       280 ~~l~~~~~~~~~~~eA~~~~~~ai~l------dP~~~~y~  313 (334)
T d1dcea1         280 ILLMRALDPLLYEKETLQYFSTLKAV------DPMRAAYL  313 (334)
T ss_dssp             HHHHHHHCTGGGHHHHHHHHHHHHHH------CGGGHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHH------CCCCHHHH
T ss_conf             99999998789999999999999987------96639999

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=9.2e-13  Score=91.42  Aligned_cols=186  Identities=8%  Similarity=-0.013  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf             9999999997103477789999577999999999999829-967999999998604999289999999999980996899
Q 001619          264 DEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQG-DFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIA  342 (1043)
Q Consensus       264 ~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g-~~e~v~~lyerAi~~~~~~~~LWl~yA~~~e~~g~~e~A  342 (1043)
                      ..++..++++|.        ++|.+..+|..++..+...+ +.+.+...|++|+...|++..+|...+..+...|+.++|
T Consensus        60 ~~Al~~~~~ai~--------lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eA  131 (315)
T d2h6fa1          60 ERAFKLTRDAIE--------LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQE  131 (315)
T ss_dssp             HHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTH
T ss_pred             HHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf             999999999998--------798876999999999998376799999999999988774226898875888850537889


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC------HHHHHHHH
Q ss_conf             999999999873026068999999999808999999999966417881259999999999998099------99999999
Q 001619          343 SYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGN------FVAACDTY  416 (1043)
Q Consensus       343 r~ilerA~~~~~~~~p~iwl~~a~~E~~~g~~e~Ar~il~ral~~~~~~~~~iw~~~a~lE~~~G~------~e~Ar~iy  416 (1043)
                      ...|.+|+.. .|++..+|...+.+....|+++.|...+.+++.. .|.....|...+.+..+.|.      +++|...|
T Consensus       132 l~~~~kal~~-dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~-~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~  209 (315)
T d2h6fa1         132 LEFIADILNQ-DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE-DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYT  209 (315)
T ss_dssp             HHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             9887555432-1004688998877888888667899999999987-9744999988999998745631023547767999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf             9999998741048861799999999999999999998089764999999999986039974
Q 001619          417 KEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDV  477 (1043)
Q Consensus       417 ekal~~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~ie~aR~llerAl~~~p~~  477 (1043)
                      .++|+.      .|.....|.....        + ....+   ++.+..++++++...|+.
T Consensus       210 ~~al~~------~P~~~~~~~~l~~--------l-l~~~~---~~~~~~~~~~~~~l~~~~  252 (315)
T d2h6fa1         210 LEMIKL------VPHNESAWNYLKG--------I-LQDRG---LSKYPNLLNQLLDLQPSH  252 (315)
T ss_dssp             HHHHHH------STTCHHHHHHHHH--------H-HTTTC---GGGCHHHHHHHHHHTTTC
T ss_pred             HHHHHH------CCCCHHHHHHHHH--------H-HHHCC---HHHHHHHHHHHHHHCCCC
T ss_conf             999984------9885699999877--------9-88627---188999999999728775

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=1.9e-10  Score=77.32  Aligned_cols=85  Identities=7%  Similarity=0.013  Sum_probs=46.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHH-----HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHC
Q ss_conf             9189999999999996999989-----99999999998099989999999999833899------999999999997208
Q 001619           53 DDIEMIGLVYDSFLAEFPLCYG-----YWRKYADHKARLCSIDKVVEVFERAVQSATYS------VDVWFHYCSLSMSTF  121 (1043)
Q Consensus        53 ~~~~~ar~vyeraL~~~P~s~~-----lW~~yi~~e~~~~~~e~a~~lfeRAL~~~p~s------~~LW~~Y~~~~~~~~  121 (1043)
                      |+++++...|+++|+..|.+..     .+...+......|++++|...|++++...+..      ...+...+...... 
T Consensus        26 g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-  104 (366)
T d1hz4a_          26 GNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ-  104 (366)
T ss_dssp             TCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH-
T ss_conf             8999999999999854868996799999999999999879999999999999999875011489999998887887888-


Q ss_pred             CCHHHHHHHHHHHHHHC
Q ss_conf             99689999999999961
Q 001619          122 EDPNDVRRLFKRALSFV  138 (1043)
Q Consensus       122 ~~~e~ar~vferAL~~l  138 (1043)
                      +++..+...+.+|+...
T Consensus       105 ~~~~~a~~~~~~al~~~  121 (366)
T d1hz4a_         105 GFLQTAWETQEKAFQLI  121 (366)
T ss_dssp             TCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
T ss_conf             88999998899999986

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=9.7e-12  Score=85.17  Aligned_cols=103  Identities=7%  Similarity=-0.145  Sum_probs=60.8

Q ss_pred             CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             99999999999981199918999999999999699998999999999998099989999999999833899999999999
Q 001619           36 DFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCS  115 (1043)
Q Consensus        36 d~~~W~~~i~~~e~~~~~~~~~ar~vyeraL~~~P~s~~lW~~yi~~e~~~~~~e~a~~lfeRAL~~~p~s~~LW~~Y~~  115 (1043)
                      ....|......+...  |..+.+...|+++|+..|.++..|...+......+++++|...|++|+...|.+...|...+.
T Consensus        36 ~a~~~~~~G~~y~~~--g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~  113 (259)
T d1xnfa_          36 RAQLLYERGVLYDSL--GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI  113 (259)
T ss_dssp             HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999987--999999999998543499988999600427888777887523446899987611115888999


Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             99720899689999999999961987
Q 001619          116 LSMSTFEDPNDVRRLFKRALSFVGKD  141 (1043)
Q Consensus       116 ~~~~~~~~~e~ar~vferAL~~lp~~  141 (1043)
                      ..... +..+.|...|++|++..|.+
T Consensus       114 ~~~~~-g~~~~A~~~~~~al~~~p~~  138 (259)
T d1xnfa_         114 ALYYG-GRDKLAQDDLLAFYQDDPND  138 (259)
T ss_dssp             HHHHT-TCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHCCCC
T ss_conf             99987-66799999999998653000

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=3.9e-10  Score=75.35  Aligned_cols=221  Identities=13%  Similarity=0.045  Sum_probs=135.4

Q ss_pred             HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             99999971034777899995779999999999998299679999999986049992899999999999809968999999
Q 001619          267 INCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYAL  346 (1043)
Q Consensus       267 ~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~v~~lyerAi~~~~~~~~LWl~yA~~~e~~g~~e~Ar~il  346 (1043)
                      +..+++.+.+.    ...++....+|...+..+...|+++.++..|++|+...|+.+..|...+..+...|++++|...|
T Consensus        19 l~~~~e~l~~~----~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~   94 (259)
T d1xnfa_          19 LARMEQILASR----ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF   94 (259)
T ss_dssp             HHHHHHHHTSS----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHH
T ss_conf             99999998763----36999999999999999998799999999999854349998899960042788877788752344


Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999873026068999999999808999999999966417881259999999999998099999999999999998741
Q 001619          347 DRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQ  426 (1043)
Q Consensus       347 erA~~~~~~~~p~iwl~~a~~E~~~g~~e~Ar~il~ral~~~~~~~~~iw~~~a~lE~~~G~~e~Ar~iyekal~~~~~~  426 (1043)
                      ++++.. .|+.+..|+..+.+....|+++.|...|++++.. .|.....+...+....+.+..+.+..+.......    
T Consensus        95 ~~al~~-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  168 (259)
T d1xnfa_          95 DSVLEL-DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS----  168 (259)
T ss_dssp             HHHHHH-CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS----
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----
T ss_conf             689998-7611115888999999876679999999999865-3000788899999998853587899999876403----


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH---HHHHHHCCCH
Q ss_conf             0488617999999999999999999980897649999999999860399743248956599999999---9999980999
Q 001619          427 RKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLY---LQFLDLCGTI  503 (1043)
Q Consensus       427 ~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~ie~aR~llerAl~~~p~~~~~l~~~~~~~i~~lw---l~fe~~~G~~  503 (1043)
                        .+..+. +.           ......+....    ...++.+.......     ..........|   .......|+.
T Consensus       169 --~~~~~~-~~-----------~~~~~~~~~~~----~~~~~~~~~~~~~~-----~~~~~~~~~~~~~lg~~~~~~g~~  225 (259)
T d1xnfa_         169 --DKEQWG-WN-----------IVEFYLGNISE----QTLMERLKADATDN-----TSLAEHLSETNFYLGKYYLSLGDL  225 (259)
T ss_dssp             --CCCSTH-HH-----------HHHHHTTSSCH----HHHHHHHHHHCCSH-----HHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             --CHHHHH-HH-----------HHHHHHHHHHH----HHHHHHHHHHHHHH-----HHCCCCCHHHHHHHHHHHHHCCCH
T ss_conf             --144434-55-----------77888888777----77899999999986-----640845099999999999987899


Q ss_pred             HHHHHHHHHHHHHCCCC
Q ss_conf             99999999999628987
Q 001619          504 HDIRNAWNQHIKLFPHT  520 (1043)
Q Consensus       504 ~~a~~~~~ra~k~~p~~  520 (1043)
                      +.|.+.+.+++...|..
T Consensus       226 ~~A~~~~~~al~~~p~~  242 (259)
T d1xnfa_         226 DSATALFKLAVANNVHN  242 (259)
T ss_dssp             HHHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHHHHHCCCCC
T ss_conf             99999999999839977

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=1.3e-08  Score=65.97  Aligned_cols=282  Identities=12%  Similarity=-0.008  Sum_probs=144.7

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCH---
Q ss_conf             9999999999980999899999999998338999-----99999999997208996899999999999619877738---
Q 001619           74 GYWRKYADHKARLCSIDKVVEVFERAVQSATYSV-----DVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCH---  145 (1043)
Q Consensus        74 ~lW~~yi~~e~~~~~~e~a~~lfeRAL~~~p~s~-----~LW~~Y~~~~~~~~~~~e~ar~vferAL~~lp~~~~s~---  145 (1043)
                      .+....+......|++++|..+|++||...|.+.     ..+...+...... ++++.|...|++|+...+......   
T Consensus        13 e~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~   91 (366)
T d1hz4a_          13 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCK-GELTRSLALMQQTEQMARQHDVWHYAL   91 (366)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf             9999999999988899999999999985486899679999999999999987-999999999999999987501148999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             9999999999981455659999999861787----018999999999998778765320024577999863216666676
Q 001619          146 TMWDKYIEFEISQQRWSSLAQIFVQTLRFPS----KKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYY  221 (1043)
Q Consensus       146 ~IW~~yi~fe~~~~~~e~a~kiy~RaL~~p~----~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~  221 (1043)
                      ..+..........+++..+...|.+++.+..    ...... ........                              
T Consensus        92 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~-~~~~~~la------------------------------  140 (366)
T d1hz4a_          92 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH-EFLVRIRA------------------------------  140 (366)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH-HHHHHHHH------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH-HHHHHHHH------------------------------
T ss_conf             99988878878888899999889999998675034125678-88998887------------------------------


Q ss_pred             CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             61022477874218751357779999998877989898899999999999971034777899995779999999999998
Q 001619          222 KDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEK  301 (1043)
Q Consensus       222 ~~~e~~~~l~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~  301 (1043)
                                                       ..+............++..+.....   .........+...+.....
T Consensus       141 ---------------------------------~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  184 (366)
T d1hz4a_         141 ---------------------------------QLLWAWARLDEAEASARSGIEVLSS---YQPQQQLQCLAMLIQCSLA  184 (366)
T ss_dssp             ---------------------------------HHHHHTTCHHHHHHHHHHHHHHTTT---SCGGGGHHHHHHHHHHHHH
T ss_pred             ---------------------------------HHHHHHCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_conf             ---------------------------------8999814566668999998887663---0024689999888888876


Q ss_pred             CCCHHHHHHHHHHHHCCC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHH
Q ss_conf             299679999999986049-------99289999999999980996899999999999873026---06899999999980
Q 001619          302 QGDFDWVVKLYERCLIPC-------ADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRL---PVIHLFNARYKEQI  371 (1043)
Q Consensus       302 ~g~~e~v~~lyerAi~~~-------~~~~~LWl~yA~~~e~~g~~e~Ar~ilerA~~~~~~~~---p~iwl~~a~~E~~~  371 (1043)
                      .++...+...+.+++...       +....+|...+.++...|+.+.|...+++++.......   ...+...+......
T Consensus       185 ~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  264 (366)
T d1hz4a_         185 RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL  264 (366)
T ss_dssp             HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             46678888999999999987311572699999999999986044898999999999762246667778899999999875


Q ss_pred             CCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             8999999999966417-----881259999999999998099999999999999998
Q 001619          372 GDTSAARAAFPESYID-----SDSRFIEKVTFKANMERRLGNFVAACDTYKEALETA  423 (1043)
Q Consensus       372 g~~e~Ar~il~ral~~-----~~~~~~~iw~~~a~lE~~~G~~e~Ar~iyekal~~~  423 (1043)
                      |+++.|...+++++..     ..+.....|...+.+....|+++.|++.|++|+++.
T Consensus       265 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~  321 (366)
T d1hz4a_         265 GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA  321 (366)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             879999999999998876426674799999999999998789999999999999976

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.04  E-value=7.9e-08  Score=61.26  Aligned_cols=178  Identities=11%  Similarity=0.037  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHCCC---C---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC-----C
Q ss_conf             999999999998299679999999986049---9---9289999999999980996899999999999873026-----0
Q 001619          290 KNWHDYLSFAEKQGDFDWVVKLYERCLIPC---A---DYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRL-----P  358 (1043)
Q Consensus       290 ~~W~~yi~~e~~~g~~e~v~~lyerAi~~~---~---~~~~LWl~yA~~~e~~g~~e~Ar~ilerA~~~~~~~~-----p  358 (1043)
                      ++|.+.+.++...++++++...|++|+..+   .   .....|...+.++...|+.++|...|.+++.++....     .
T Consensus        38 ~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  117 (290)
T d1qqea_          38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA  117 (290)
T ss_dssp             HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             99999999999886999999999999999987599889999999999999980885888999997667765325320589


Q ss_pred             HHHHHHHHHHH-HHCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             68999999999-8089999999999664178-----81259999999999998099999999999999998741048861
Q 001619          359 VIHLFNARYKE-QIGDTSAARAAFPESYIDS-----DSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTL  432 (1043)
Q Consensus       359 ~iwl~~a~~E~-~~g~~e~Ar~il~ral~~~-----~~~~~~iw~~~a~lE~~~G~~e~Ar~iyekal~~~~~~~~~p~~  432 (1043)
                      .++...+...+ ..|+++.|...|.+++...     .+....++...+.+....|+++.|..+|++++....      ..
T Consensus       118 ~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~------~~  191 (290)
T d1qqea_         118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM------GN  191 (290)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS------SC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC------CC
T ss_conf             999998886764787899998899999999873376033346889999999981739999999999998681------33


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf             799999999999999999998089764999999999986039974
Q 001619          433 PLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDV  477 (1043)
Q Consensus       433 ~~l~~~~ar~~~~~~~~fe~~~g~~~~ie~aR~llerAl~~~p~~  477 (1043)
                      ..+... +...+..........|.   .+.++..|++++...|..
T Consensus       192 ~~~~~~-~~~~~~~~~~~~l~~~d---~~~A~~~~~~~~~~~~~~  232 (290)
T d1qqea_         192 RLSQWS-LKDYFLKKGLCQLAATD---AVAAARTLQEGQSEDPNF  232 (290)
T ss_dssp             TTTGGG-HHHHHHHHHHHHHHTTC---HHHHHHHHHGGGCC----
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHCCCC
T ss_conf             245556-99999999999998465---999999999999759774

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.5e-08  Score=65.59  Aligned_cols=110  Identities=13%  Similarity=0.005  Sum_probs=80.6

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf             99999999829967999999998604999289999999999980996899999999999873026068999999999808
Q 001619          293 HDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIG  372 (1043)
Q Consensus       293 ~~yi~~e~~~g~~e~v~~lyerAi~~~~~~~~LWl~yA~~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~a~~E~~~g  372 (1043)
                      ..-+..+...|+++.+...|++||..+|....+|...+..+...|++++|...|.+++.. .|+.+..|+..+......|
T Consensus         7 ~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           7 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-KPDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH-CCCHHHHHHHHHHHHHHCC
T ss_conf             999999999699999999999988619960134300011011000011210013467774-0220267788999999812


Q ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             99999999996641788125999999999999
Q 001619          373 DTSAARAAFPESYIDSDSRFIEKVTFKANMER  404 (1043)
Q Consensus       373 ~~e~Ar~il~ral~~~~~~~~~iw~~~a~lE~  404 (1043)
                      +++.|...|++++. ..|+...++..+.+++.
T Consensus        86 ~~~~A~~~~~~a~~-~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          86 RFEEAKRTYEEGLK-HEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             CHHHHHHHHHHHHT-TCTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHC
T ss_conf             79999999999998-49898999999997838

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.5e-07  Score=59.50  Aligned_cols=95  Identities=13%  Similarity=0.054  Sum_probs=60.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             91899999999999969999899999999999809998999999999983389999999999999720899689999999
Q 001619           53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFK  132 (1043)
Q Consensus        53 ~~~~~ar~vyeraL~~~P~s~~lW~~yi~~e~~~~~~e~a~~lfeRAL~~~p~s~~LW~~Y~~~~~~~~~~~e~ar~vfe  132 (1043)
                      ++++.+...|+++++..|.+...|..++......+++++|...|++||+..|.++..|..++...... ++++.|...|+
T Consensus        24 ~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~-g~~~eA~~~~~  102 (159)
T d1a17a_          24 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL-GKFRAALRDYE  102 (159)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-CCHHHHHHHHH
T ss_conf             89999999866021100011333245678887405421288889999987544668779999999994-99999999899


Q ss_pred             HHHHHCCCCCCCHHHHHHH
Q ss_conf             9999619877738999999
Q 001619          133 RALSFVGKDYLCHTMWDKY  151 (1043)
Q Consensus       133 rAL~~lp~~~~s~~IW~~y  151 (1043)
                      +|+..-|.   ...++..+
T Consensus       103 ~a~~~~p~---~~~~~~~l  118 (159)
T d1a17a_         103 TVVKVKPH---DKDAKMKY  118 (159)
T ss_dssp             HHHHHSTT---CHHHHHHH
T ss_pred             HHHHCCCC---CHHHHHHH
T ss_conf             99872999---79999999

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=8.1e-08  Score=61.19  Aligned_cols=129  Identities=14%  Similarity=0.042  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             99999999999982996799999999860499928999999999998099689999999999987302606899999999
Q 001619          289 LKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYK  368 (1043)
Q Consensus       289 ~~~W~~yi~~e~~~g~~e~v~~lyerAi~~~~~~~~LWl~yA~~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~a~~E  368 (1043)
                      +.+|.. +......|+++.+...|+++.   +..+.+|...+..+...|+++.|...|++|++. .|+.+..|...+...
T Consensus         6 ~~l~~~-g~~~~~~~d~~~Al~~~~~i~---~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l-dp~~~~a~~~~g~~~   80 (192)
T d1hh8a_           6 ISLWNE-GVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR-DKHLAVAYFQRGMLY   80 (192)
T ss_dssp             HHHHHH-HHHHHHTTCHHHHHHHHHTSS---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHCCCHHHHHHHHHHCC---CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_conf             999999-999998779999999998648---988999999999999858914678789999998-552346678899999


Q ss_pred             HHHCCHHHHHHHHHHHHHCCC---------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             980899999999996641788---------------125999999999999809999999999999999
Q 001619          369 EQIGDTSAARAAFPESYIDSD---------------SRFIEKVTFKANMERRLGNFVAACDTYKEALET  422 (1043)
Q Consensus       369 ~~~g~~e~Ar~il~ral~~~~---------------~~~~~iw~~~a~lE~~~G~~e~Ar~iyekal~~  422 (1043)
                      ...|+++.|...|++++....               ....+++...+.+...+|+++.|...|.+|+..
T Consensus        81 ~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~  149 (192)
T d1hh8a_          81 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  149 (192)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf             854249999999999998672673678998665436305889999999999978999999999999836

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=6.4e-08  Score=61.83  Aligned_cols=105  Identities=11%  Similarity=-0.038  Sum_probs=75.1

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHH
Q ss_conf             99999829967999999998604999289999999999980996899999999999873026068999999999808999
Q 001619          296 LSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTS  375 (1043)
Q Consensus       296 i~~e~~~g~~e~v~~lyerAi~~~~~~~~LWl~yA~~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~a~~E~~~g~~e  375 (1043)
                      +..+.+.|+++.+...|++|+...|....+|.+++..+...|++++|...|++|+.. .|.....|...+......|+++
T Consensus        17 gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~-~p~~~~a~~~~g~~~~~~g~~~   95 (159)
T d1a17a_          17 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-DKKYIKGYYRRAASNMALGKFR   95 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHH
T ss_conf             999999589999999866021100011333245678887405421288889999987-5446687799999999949999


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             999999966417881259999999999
Q 001619          376 AARAAFPESYIDSDSRFIEKVTFKANM  402 (1043)
Q Consensus       376 ~Ar~il~ral~~~~~~~~~iw~~~a~l  402 (1043)
                      .|...|.+++.. .|....++..+..+
T Consensus        96 eA~~~~~~a~~~-~p~~~~~~~~l~~~  121 (159)
T d1a17a_          96 AALRDYETVVKV-KPHDKDAKMKYQEC  121 (159)
T ss_dssp             HHHHHHHHHHHH-STTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHC-CCCCHHHHHHHHHH
T ss_conf             999989999872-99979999999999

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=3.6e-07  Score=57.24  Aligned_cols=131  Identities=10%  Similarity=0.074  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             99999999999811999189999999999996999989999999999980999899999999998338999999999999
Q 001619           37 FDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSL  116 (1043)
Q Consensus        37 ~~~W~~~i~~~e~~~~~~~~~ar~vyeraL~~~P~s~~lW~~yi~~e~~~~~~e~a~~lfeRAL~~~p~s~~LW~~Y~~~  116 (1043)
                      +.+|.+-+...+.   ++++.+...|+++   .|.+.++|...+......|++++|...|++||+..|.++..|...+..
T Consensus         6 ~~l~~~g~~~~~~---~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~   79 (192)
T d1hh8a_           6 ISLWNEGVLAADK---KDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGML   79 (192)
T ss_dssp             HHHHHHHHHHHHT---TCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHC---CCHHHHHHHHHHC---CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999987---7999999999864---898899999999999985891467878999999855234667889999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCC-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             97208996899999999999619877-------------73899999999999814556599999998617
Q 001619          117 SMSTFEDPNDVRRLFKRALSFVGKDY-------------LCHTMWDKYIEFEISQQRWSSLAQIFVQTLRF  174 (1043)
Q Consensus       117 ~~~~~~~~e~ar~vferAL~~lp~~~-------------~s~~IW~~yi~fe~~~~~~e~a~kiy~RaL~~  174 (1043)
                      .... ++++.|...|++|+..++...             ....+|...+......++++.+...|.+++.+
T Consensus        80 ~~~~-g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~  149 (192)
T d1hh8a_          80 YYQT-EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  149 (192)
T ss_dssp             HHHT-TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHH-CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf             9854-249999999999998672673678998665436305889999999999978999999999999836

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1.4e-07  Score=59.76  Aligned_cols=99  Identities=10%  Similarity=0.004  Sum_probs=74.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             91899999999999969999899999999999809998999999999983389999999999999720899689999999
Q 001619           53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFK  132 (1043)
Q Consensus        53 ~~~~~ar~vyeraL~~~P~s~~lW~~yi~~e~~~~~~e~a~~lfeRAL~~~p~s~~LW~~Y~~~~~~~~~~~e~ar~vfe  132 (1043)
                      ++++++...|+++++..|.++.+|...+......+++++|...|++|+...|.++..|..++...... +.++.|...|+
T Consensus        17 g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~-~~~~~A~~~~~   95 (117)
T d1elwa_          17 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL-NRFEEAKRTYE   95 (117)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCHHHHHHHHH
T ss_conf             99999999999988619960134300011011000011210013467774022026778899999981-27999999999


Q ss_pred             HHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             99996198777389999999999
Q 001619          133 RALSFVGKDYLCHTMWDKYIEFE  155 (1043)
Q Consensus       133 rAL~~lp~~~~s~~IW~~yi~fe  155 (1043)
                      +|++..|.   +..+|..+.+.+
T Consensus        96 ~a~~~~p~---~~~~~~~l~~l~  115 (117)
T d1elwa_          96 EGLKHEAN---NPQLKEGLQNME  115 (117)
T ss_dssp             HHHTTCTT---CHHHHHHHHHHH
T ss_pred             HHHHHCCC---CHHHHHHHHHHH
T ss_conf             99984989---899999999783

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.81  E-value=2.8e-06  Score=51.77  Aligned_cols=133  Identities=14%  Similarity=0.065  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHCCC---CCC---HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHCC-----C
Q ss_conf             999999999998299679999999986049---992---8999999999998-099689999999999987302-----6
Q 001619          290 KNWHDYLSFAEKQGDFDWVVKLYERCLIPC---ADY---PEFWMRYVDFMES-KGGREIASYALDRATQIFLKR-----L  357 (1043)
Q Consensus       290 ~~W~~yi~~e~~~g~~e~v~~lyerAi~~~---~~~---~~LWl~yA~~~e~-~g~~e~Ar~ilerA~~~~~~~-----~  357 (1043)
                      ..|...+.++...|+++.+...|++|+...   +..   ...+...+..++. .|+++.|...|.+|+..+...     .
T Consensus        78 ~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~  157 (290)
T d1qqea_          78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS  157 (290)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf             99999999999808858889999976677653253205899999988867647878999988999999998733760333


Q ss_pred             CHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             06899999999980899999999996641788------125999999999999809999999999999999
Q 001619          358 PVIHLFNARYKEQIGDTSAARAAFPESYIDSD------SRFIEKVTFKANMERRLGNFVAACDTYKEALET  422 (1043)
Q Consensus       358 p~iwl~~a~~E~~~g~~e~Ar~il~ral~~~~------~~~~~iw~~~a~lE~~~G~~e~Ar~iyekal~~  422 (1043)
                      ..++...+.+....|++++|..+|.+++....      .....++...+......|+++.|...|+++++.
T Consensus       158 ~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~  228 (290)
T d1qqea_         158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE  228 (290)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             46889999999981739999999999998681332455569999999999999846599999999999975

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=3.3e-08  Score=63.60  Aligned_cols=77  Identities=9%  Similarity=0.018  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             999999999999829967999999998604999289999999999980996899999999999873026068999999
Q 001619          289 LKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNAR  366 (1043)
Q Consensus       289 ~~~W~~yi~~e~~~g~~e~v~~lyerAi~~~~~~~~LWl~yA~~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~a~  366 (1043)
                      ...|...+++....++++.++..|++|+...|+....|...+..+...|+..+|...|.||+.+ .+..+..+.....
T Consensus       152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~-~~~~~~a~~nL~~  228 (497)
T d1ya0a1         152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV-KFPFPAASTNLQK  228 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-SBCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHH
T ss_conf             9999999999998024789999999999878996599999999999869999999999999817-9997899999999

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.79  E-value=3.8e-07  Score=57.07  Aligned_cols=108  Identities=13%  Similarity=0.118  Sum_probs=88.4

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             99999998119991899999999999969999899999999999809998999999999983389999999999999720
Q 001619           41 TSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMST  120 (1043)
Q Consensus        41 ~~~i~~~e~~~~~~~~~ar~vyeraL~~~P~s~~lW~~yi~~e~~~~~~e~a~~lfeRAL~~~p~s~~LW~~Y~~~~~~~  120 (1043)
                      ......+-..  ++++.|...|+++|...|.+..+|...+......+++++|...|++||...|.++..|..++......
T Consensus         8 ~~~Gn~~~~~--g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l   85 (201)
T d2c2la1           8 KEQGNRLFVG--RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM   85 (201)
T ss_dssp             HHHHHHHHHT--TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHC--CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf             9999999986--99999999999999859998999981789874100000124788888871887389999999999987


Q ss_pred             CCCHHHHHHHHHHHHHHCCCCC--CCHHHHHHH
Q ss_conf             8996899999999999619877--738999999
Q 001619          121 FEDPNDVRRLFKRALSFVGKDY--LCHTMWDKY  151 (1043)
Q Consensus       121 ~~~~e~ar~vferAL~~lp~~~--~s~~IW~~y  151 (1043)
                       ++++.|...|++|+...|...  ....+|..+
T Consensus        86 -~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l  117 (201)
T d2c2la1          86 -ESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL  117 (201)
T ss_dssp             -TCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred             -CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             -99999999999998749556798999999999

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.75  E-value=9.1e-08  Score=60.87  Aligned_cols=93  Identities=14%  Similarity=-0.013  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             99999999982996799999999860499928999999999998099689999999999987302606899999999980
Q 001619          292 WHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQI  371 (1043)
Q Consensus       292 W~~yi~~e~~~g~~e~v~~lyerAi~~~~~~~~LWl~yA~~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~a~~E~~~  371 (1043)
                      |...+......|+++.+...|++|+...|+.+..|...+..+...|+++.|...|++|+.. .|+++.+|+..+......
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML-DPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCHHHHHHHHHHC
T ss_conf             9999999998760589999886101121111001233545641012587741000001111-110000037899999997


Q ss_pred             CCHHHHHHHHHHHH
Q ss_conf             89999999999664
Q 001619          372 GDTSAARAAFPESY  385 (1043)
Q Consensus       372 g~~e~Ar~il~ral  385 (1043)
                      |++++|.+.|++++
T Consensus        98 g~~~~A~~~l~~~l  111 (112)
T d1hxia_          98 HNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
T ss_conf             89999999999981

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.74  E-value=1.7e-07  Score=59.21  Aligned_cols=94  Identities=10%  Similarity=0.024  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             99999999981199918999999999999699998999999999998099989999999999833899999999999997
Q 001619           39 EWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSM  118 (1043)
Q Consensus        39 ~W~~~i~~~e~~~~~~~~~ar~vyeraL~~~P~s~~lW~~yi~~e~~~~~~e~a~~lfeRAL~~~p~s~~LW~~Y~~~~~  118 (1043)
                      .|......+.+.  +++..+...|+++++..|.++..|...+......+++++|...|++|+...|.+.+.|..++....
T Consensus        18 ~~~~~g~~~~~~--g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~   95 (112)
T d1hxia_          18 NPMEEGLSMLKL--ANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT   95 (112)
T ss_dssp             CHHHHHHHHHHT--TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH--HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             999999999987--605899998861011211110012335456410125877410000011111100000378999999


Q ss_pred             HHCCCHHHHHHHHHHHH
Q ss_conf             20899689999999999
Q 001619          119 STFEDPNDVRRLFKRAL  135 (1043)
Q Consensus       119 ~~~~~~e~ar~vferAL  135 (1043)
                      .. ++.++|...|+|.|
T Consensus        96 ~~-g~~~~A~~~l~~~l  111 (112)
T d1hxia_          96 NE-HNANAALASLRAWL  111 (112)
T ss_dssp             HH-HHHHHHHHHHHHHH
T ss_pred             HC-CCHHHHHHHHHHHH
T ss_conf             97-89999999999981

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.73  E-value=1.2e-07  Score=60.10  Aligned_cols=90  Identities=12%  Similarity=0.032  Sum_probs=47.6

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHH
Q ss_conf             99999829967999999998604999289999999999980996899999999999873026068999999999808999
Q 001619          296 LSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTS  375 (1043)
Q Consensus       296 i~~e~~~g~~e~v~~lyerAi~~~~~~~~LWl~yA~~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~a~~E~~~g~~e  375 (1043)
                      +..+...|+++.++..|++||...|..+.+|.+.+..+...|+++.|...|++|+.. .|+++..|+..|......|+++
T Consensus        11 Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l-~p~~~~a~~~lg~~~~~l~~~~   89 (201)
T d2c2la1          11 GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-DGQSVKAHFFLGQCQLEMESYD   89 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHH
T ss_conf             999998699999999999999859998999981789874100000124788888871-8873899999999999879999


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999996641
Q 001619          376 AARAAFPESYI  386 (1043)
Q Consensus       376 ~Ar~il~ral~  386 (1043)
                      .|...|++++.
T Consensus        90 ~A~~~~~~al~  100 (201)
T d2c2la1          90 EAIANLQRAYS  100 (201)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999987

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=4.4e-07  Score=56.68  Aligned_cols=113  Identities=13%  Similarity=-0.069  Sum_probs=84.5

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf             99577999999999999829967999999998604999289999999999980996899999999999873026068999
Q 001619          284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLF  363 (1043)
Q Consensus       284 ~~p~~~~~W~~yi~~e~~~g~~e~v~~lyerAi~~~~~~~~LWl~yA~~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~  363 (1043)
                      .+|.....|..++....+.++.+.+...|++++...+  ...++..+..+...|+++.|+..|.+|+.. .|++...|..
T Consensus       115 l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l-~P~~~~~~~~  191 (497)
T d1ya0a1         115 VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQL-VPSNGQPYNQ  191 (497)
T ss_dssp             ----------------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTBSHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHH
T ss_conf             9911399999857998758999999999998827889--999999999999802478999999999987-8996599999


Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             9999998089999999999664178812599999999
Q 001619          364 NARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKA  400 (1043)
Q Consensus       364 ~a~~E~~~g~~e~Ar~il~ral~~~~~~~~~iw~~~a  400 (1043)
                      .+.+....|+...|...|.||+.. .+.+...+...+
T Consensus       192 Lg~~~~~~~~~~~A~~~y~ral~~-~~~~~~a~~nL~  227 (497)
T d1ya0a1         192 LAILASSKGDHLTTIFYYCRSIAV-KFPFPAASTNLQ  227 (497)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHSS-SBCCHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHC-CCCCHHHHHHHH
T ss_conf             999999869999999999999817-999789999999

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=2.5e-06  Score=52.05  Aligned_cols=119  Identities=13%  Similarity=0.048  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             99999999998299679999999986049992899999999999809968999999999998730260689999999998
Q 001619          291 NWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQ  370 (1043)
Q Consensus       291 ~W~~yi~~e~~~g~~e~v~~lyerAi~~~~~~~~LWl~yA~~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~a~~E~~  370 (1043)
                      .+...+..+...|+++.++..|++|+..++....+|.....             .+ ..+      ...++...|.....
T Consensus        15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~-------------~~-~~~------~~~~~~nla~~y~k   74 (170)
T d1p5qa1          15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQ-------------KA-QAL------RLASHLNLAMCHLK   74 (170)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHH-------------HH-HHH------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHH-------------HH-CHH------HHHHHHHHHHHHHH
T ss_conf             99999999999699999999999998875101000357776-------------40-646------79999999999886


Q ss_pred             HCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf             089999999999664178812599999999999980999999999999999987410488617999
Q 001619          371 IGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLY  436 (1043)
Q Consensus       371 ~g~~e~Ar~il~ral~~~~~~~~~iw~~~a~lE~~~G~~e~Ar~iyekal~~~~~~~~~p~~~~l~  436 (1043)
                      .|++++|...+.+++.. .|.+...|...+.....+|+++.|+..|++++++      .|..+.+.
T Consensus        75 ~~~~~~A~~~~~~al~~-~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l------~P~n~~~~  133 (170)
T d1p5qa1          75 LQAFSAAIESCNKALEL-DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL------YPNNKAAK  133 (170)
T ss_dssp             TTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CSSCHHHH
T ss_pred             HHHCCCCCCHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CCCCHHHH
T ss_conf             42110110000000100-2231034677799998722299999999999972------98989999

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.57  E-value=5e-07  Score=56.33  Aligned_cols=52  Identities=12%  Similarity=0.030  Sum_probs=28.4

Q ss_pred             HHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             80899999999996641788125999999999999809999999999999999
Q 001619          370 QIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET  422 (1043)
Q Consensus       370 ~~g~~e~Ar~il~ral~~~~~~~~~iw~~~a~lE~~~G~~e~Ar~iyekal~~  422 (1043)
                      +.|+++.|...|+++++. .|+....+..++.+....|++++|.+.|+++++.
T Consensus         8 ~~G~l~eAl~~l~~al~~-~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l   59 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL   59 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             888999999999999997-8999999999999999879999999999999986

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.49  E-value=1e-05  Score=48.31  Aligned_cols=111  Identities=13%  Similarity=-0.005  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             99999999998299679999999986049992899999999999809968999999999998730260689999999998
Q 001619          291 NWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQ  370 (1043)
Q Consensus       291 ~W~~yi~~e~~~g~~e~v~~lyerAi~~~~~~~~LWl~yA~~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~a~~E~~  370 (1043)
                      .+...+..+-+.|++..+...|++|+..++....+.            .+.  ......+      ...+++..+.....
T Consensus        17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~------------~~~--~~~~~~~------~~~~~~Nla~~~~~   76 (168)
T d1kt1a1          17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLS------------EKE--SKASESF------LLAAFLNLAMCYLK   76 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC------------HHH--HHHHHHH------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC------------HHH--HHHCCHH------HHHHHHHHHHHHHH
T ss_conf             999999999995999999999999999998750012------------455--5310646------79999849999877


Q ss_pred             HCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             0899999999996641788125999999999999809999999999999999
Q 001619          371 IGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET  422 (1043)
Q Consensus       371 ~g~~e~Ar~il~ral~~~~~~~~~iw~~~a~lE~~~G~~e~Ar~iyekal~~  422 (1043)
                      .|+++.|...+.+++.. .|.+...|...+.....+|+++.|...|++++++
T Consensus        77 l~~~~~Ai~~~~~al~l-~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l  127 (168)
T d1kt1a1          77 LREYTKAVECCDKALGL-DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  127 (168)
T ss_dssp             TTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHHCCCCHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             62201100022322201-3104889998899998827899999999999985

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.44  E-value=1.8e-05  Score=46.85  Aligned_cols=63  Identities=16%  Similarity=-0.010  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             6899999999980899999999996641788125999999999999809999999999999999
Q 001619          359 VIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET  422 (1043)
Q Consensus       359 ~iwl~~a~~E~~~g~~e~Ar~il~ral~~~~~~~~~iw~~~a~lE~~~G~~e~Ar~iyekal~~  422 (1043)
                      ..|...+......|+++.|...+++++. ..|.....|...+......|+...|...|+++...
T Consensus        68 ~a~~~la~~~~~~g~~~~Al~~~~~al~-~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~  130 (179)
T d2ff4a2          68 LAHTAKAEAEIACGRASAVIAELEALTF-EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT  130 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             9999999999887990578999999998-49851999999999999855799999999999999

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.41  E-value=6.1e-06  Score=49.72  Aligned_cols=65  Identities=18%  Similarity=0.037  Sum_probs=43.5

Q ss_pred             CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             606899999999980899999999996641788125999999999999809999999999999999
Q 001619          357 LPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET  422 (1043)
Q Consensus       357 ~p~iwl~~a~~E~~~g~~e~Ar~il~ral~~~~~~~~~iw~~~a~lE~~~G~~e~Ar~iyekal~~  422 (1043)
                      ...+|...+......|+++.|...+.+++. ..|.+...|+..+.....+|+++.|...|++++++
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~-~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l  140 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALE-IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI  140 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             399999899999864021013666554431-00022367776999999804799999999999985

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=2.7e-06  Score=51.84  Aligned_cols=84  Identities=12%  Similarity=-0.029  Sum_probs=28.7

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---CCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf             9689999999999987302606899999999980---89999999999664178-8125999999999999809999999
Q 001619          338 GREIASYALDRATQIFLKRLPVIHLFNARYKEQI---GDTSAARAAFPESYIDS-DSRFIEKVTFKANMERRLGNFVAAC  413 (1043)
Q Consensus       338 ~~e~Ar~ilerA~~~~~~~~p~iwl~~a~~E~~~---g~~e~Ar~il~ral~~~-~~~~~~iw~~~a~lE~~~G~~e~Ar  413 (1043)
                      +++.|...|++++.. .|.++.+++.+|.+..+.   +++.+|..+|++++... .+.....|+..+....+.|+++.|+
T Consensus        14 ~l~~Ae~~Y~~aL~~-~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~   92 (122)
T d1nzna_          14 DLLKFEKKFQSEKAA-GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL   92 (122)
T ss_dssp             HHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999998832-9998999999999999851267899999999999860699319999999999999973169999


Q ss_pred             HHHHHHHHH
Q ss_conf             999999999
Q 001619          414 DTYKEALET  422 (1043)
Q Consensus       414 ~iyekal~~  422 (1043)
                      +.|+++|+.
T Consensus        93 ~~~~~aL~~  101 (122)
T d1nzna_          93 KYVRGLLQT  101 (122)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
T ss_conf             999999976

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.36  E-value=2.4e-05  Score=46.11  Aligned_cols=118  Identities=10%  Similarity=-0.062  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             99999999982996799999999860499928999999999998099689999999999987302606899999999980
Q 001619          292 WHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQI  371 (1043)
Q Consensus       292 W~~yi~~e~~~g~~e~v~~lyerAi~~~~~~~~LWl~yA~~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~a~~E~~~  371 (1043)
                      |..-+.-+-..|++..+...|++|+..++......             +.......+.+.      ..++...+......
T Consensus        20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~-------------~~~~~~~~~~~~------~~~~~Nla~~~~~l   80 (153)
T d2fbna1          20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD-------------DQILLDKKKNIE------ISCNLNLATCYNKN   80 (153)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC-------------CHHHHHHHHHHH------HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHH-------------HHHHHHHHHHHH------HHHHHHHHHHHHHH
T ss_conf             99999999995999999999998776073001110-------------577887631078------89996199999984


Q ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf             8999999999966417881259999999999998099999999999999998741048861799
Q 001619          372 GDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLL  435 (1043)
Q Consensus       372 g~~e~Ar~il~ral~~~~~~~~~iw~~~a~lE~~~G~~e~Ar~iyekal~~~~~~~~~p~~~~l  435 (1043)
                      |+++.|...+.+++. ..|.+.+.|+..+.....+|+++.|+..|++++++      .|....+
T Consensus        81 ~~~~~Al~~~~~al~-~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l------~P~n~~~  137 (153)
T d2fbna1          81 KDYPKAIDHASKVLK-IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL------NPNNLDI  137 (153)
T ss_dssp             TCHHHHHHHHHHHHH-HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------STTCHHH
T ss_pred             CCCCHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------CCCCHHH
T ss_conf             653011101000100-00000124677689999968999999999999982------9898999

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.33  E-value=8.5e-06  Score=48.81  Aligned_cols=66  Identities=14%  Similarity=0.042  Sum_probs=40.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             9189999999999996999989999999999980----------99989999999999833899999999999997
Q 001619           53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARL----------CSIDKVVEVFERAVQSATYSVDVWFHYCSLSM  118 (1043)
Q Consensus        53 ~~~~~ar~vyeraL~~~P~s~~lW~~yi~~e~~~----------~~~e~a~~lfeRAL~~~p~s~~LW~~Y~~~~~  118 (1043)
                      +.+++++..|+++++..|.+...|..+.......          +.+++|...|++||+..|.+++.|..++....
T Consensus        11 ~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~   86 (145)
T d1zu2a1          11 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   86 (145)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             3699999999999861883108999999999876213333677887888999999988730120587766899998

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=6.4e-06  Score=49.59  Aligned_cols=87  Identities=14%  Similarity=0.052  Sum_probs=47.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHCCCHHHH
Q ss_conf             9189999999999996999989999999999980---99989999999999833899--999999999997208996899
Q 001619           53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARL---CSIDKVVEVFERAVQSATYS--VDVWFHYCSLSMSTFEDPNDV  127 (1043)
Q Consensus        53 ~~~~~ar~vyeraL~~~P~s~~lW~~yi~~e~~~---~~~e~a~~lfeRAL~~~p~s--~~LW~~Y~~~~~~~~~~~e~a  127 (1043)
                      ++++++...|+++|...|.++..+..|+....+.   +++++|..+|++++...|..  .+.|...+...... +++++|
T Consensus        13 ~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~-g~~~~A   91 (122)
T d1nzna_          13 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL-KEYEKA   91 (122)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHT-TCHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH-HHHHHH
T ss_conf             9999999999998832999899999999999985126789999999999986069931999999999999997-316999


Q ss_pred             HHHHHHHHHHCCC
Q ss_conf             9999999996198
Q 001619          128 RRLFKRALSFVGK  140 (1043)
Q Consensus       128 r~vferAL~~lp~  140 (1043)
                      ++.|++||..-|.
T Consensus        92 ~~~~~~aL~~~P~  104 (122)
T d1nzna_          92 LKYVRGLLQTEPQ  104 (122)
T ss_dssp             HHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHCCC
T ss_conf             9999999976909

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.31  E-value=6.5e-05  Score=43.42  Aligned_cols=79  Identities=9%  Similarity=-0.042  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             99999999998299679999999986049992899999999999809968999999999998730260689999999998
Q 001619          291 NWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQ  370 (1043)
Q Consensus       291 ~W~~yi~~e~~~g~~e~v~~lyerAi~~~~~~~~LWl~yA~~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~a~~E~~  370 (1043)
                      ++..++..+.+.++++.++..|++|+...|.+...|...+..+...|+++.|...|++|+.+ .|+++.++.....+...
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l-~P~n~~~~~~l~~~~~~  144 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV-NPQNKAARLQIFMCQKK  144 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-CTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHH
T ss_conf             99849999877622011000223222013104889998899998827899999999999985-98989999999999999

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=3.1e-05  Score=45.38  Aligned_cols=95  Identities=13%  Similarity=-0.016  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHH-------HHH
Q ss_conf             9999999999829967999999998604999289999999999980996899999999999873026068-------999
Q 001619          291 NWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVI-------HLF  363 (1043)
Q Consensus       291 ~W~~yi~~e~~~g~~e~v~~lyerAi~~~~~~~~LWl~yA~~~e~~g~~e~Ar~ilerA~~~~~~~~p~i-------wl~  363 (1043)
                      .|...+..+...|+++.++..|++|+..+|....+|...+..+...|+++.|...|++|+.+ .|..+..       ++.
T Consensus         6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV-GRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHH
T ss_conf             99999999998599999999999998849645899986889998818607789999999986-80127889889999999


Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf             99999980899999999996641
Q 001619          364 NARYKEQIGDTSAARAAFPESYI  386 (1043)
Q Consensus       364 ~a~~E~~~g~~e~Ar~il~ral~  386 (1043)
                      .+......++++.|...|.+++.
T Consensus        85 lg~~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          85 IGNSYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHH
T ss_conf             99999993889999999999984

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=7.4e-05  Score=43.09  Aligned_cols=78  Identities=10%  Similarity=-0.017  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             9999999999829967999999998604999289999999999980996899999999999873026068999999999
Q 001619          291 NWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKE  369 (1043)
Q Consensus       291 ~W~~yi~~e~~~g~~e~v~~lyerAi~~~~~~~~LWl~yA~~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~a~~E~  369 (1043)
                      +|..++..+.+.|+++.+...|++|+...|.+...|...+..+...|+++.|+..|++|+.. .|+++.+....+....
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l-~P~n~~~~~~l~~~~~  141 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL-YPNNKAAKTQLAVCQQ  141 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
T ss_conf             99999999886421101100000001002231034677799998722299999999999972-9898999999999999

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.27  E-value=2.8e-05  Score=45.61  Aligned_cols=86  Identities=15%  Similarity=0.023  Sum_probs=64.7

Q ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf             95779999999999998299679999999986049992899999999999809968999999999998730260689999
Q 001619          285 DDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFN  364 (1043)
Q Consensus       285 ~p~~~~~W~~yi~~e~~~g~~e~v~~lyerAi~~~~~~~~LWl~yA~~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~  364 (1043)
                      +|.....|..++..+.+.|+++.++..|++|+...|.+...|+..+..+...|+++.|...|++|++. .|+.+.++...
T Consensus        73 ~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l-~p~n~~~~~~l  151 (169)
T d1ihga1          73 QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI-APEDKAIQAEL  151 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHH
T ss_conf             90239999989999986402101366655443100022367776999999804799999999999985-98999999999


Q ss_pred             HHHHHHH
Q ss_conf             9999980
Q 001619          365 ARYKEQI  371 (1043)
Q Consensus       365 a~~E~~~  371 (1043)
                      ..+....
T Consensus       152 ~~~~~~l  158 (169)
T d1ihga1         152 LKVKQKI  158 (169)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
T ss_conf             9999999

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.25  E-value=1.2e-05  Score=47.89  Aligned_cols=23  Identities=9%  Similarity=-0.085  Sum_probs=7.4

Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf             99999998604999289999999
Q 001619          308 VVKLYERCLIPCADYPEFWMRYV  330 (1043)
Q Consensus       308 v~~lyerAi~~~~~~~~LWl~yA  330 (1043)
                      ++..|++|+...|+..+.|..++
T Consensus        16 A~~~~e~al~~~P~~~~~~~~~g   38 (145)
T d1zu2a1          16 IRQDAENTYKSNPLDADNLTRWG   38 (145)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             99999999861883108999999

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.24  E-value=9.4e-05  Score=42.43  Aligned_cols=80  Identities=11%  Similarity=-0.096  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             99999999999982996799999999860499928999999999998099689999999999987302606899999999
Q 001619          289 LKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYK  368 (1043)
Q Consensus       289 ~~~W~~yi~~e~~~g~~e~v~~lyerAi~~~~~~~~LWl~yA~~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~a~~E  368 (1043)
                      ..+|...+..+.+.|+++.+...|++|+...|.+...|...+..+...|+++.|+..|++|+.+ .|+++.++..+..+.
T Consensus        67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l-~P~n~~~~~~l~~~~  145 (153)
T d2fbna1          67 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL-NPNNLDIRNSYELCV  145 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
T ss_conf             8999619999998465301110100010000000124677689999968999999999999982-989899999999999


Q ss_pred             H
Q ss_conf             9
Q 001619          369 E  369 (1043)
Q Consensus       369 ~  369 (1043)
                      .
T Consensus       146 ~  146 (153)
T d2fbna1         146 N  146 (153)
T ss_dssp             H
T ss_pred             H
T ss_conf             9

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=5.7e-05  Score=43.75  Aligned_cols=94  Identities=13%  Similarity=0.003  Sum_probs=50.6

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCH-------HHHHHHHHH
Q ss_conf             9999999980996899999999999873026068999999999808999999999966417881-------259999999
Q 001619          327 MRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDS-------RFIEKVTFK  399 (1043)
Q Consensus       327 l~yA~~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~a~~E~~~g~~e~Ar~il~ral~~~~~-------~~~~iw~~~  399 (1043)
                      ...+..+...|++++|...|.+++.. .|+.+.+|...+......|+++.|...+.+++.. .+       ...++|...
T Consensus         8 k~~G~~~~~~~~y~~Ai~~y~~al~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           8 KELGNDAYKKKDFDTALKHYDKAKEL-DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV-GRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHH
T ss_conf             99999999859999999999999884-9645899986889998818607789999999986-801278898899999999


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             99999809999999999999999
Q 001619          400 ANMERRLGNFVAACDTYKEALET  422 (1043)
Q Consensus       400 a~lE~~~G~~e~Ar~iyekal~~  422 (1043)
                      +......+.++.|...|++++..
T Consensus        86 g~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          86 GNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHC
T ss_conf             99999938899999999999845

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.08  E-value=4.9e-06  Score=50.29  Aligned_cols=120  Identities=8%  Similarity=0.048  Sum_probs=62.8

Q ss_pred             CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf             29967999999998604999289999999999980996899999999999873026068999999999808999999999
Q 001619          302 QGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAF  381 (1043)
Q Consensus       302 ~g~~e~v~~lyerAi~~~~~~~~LWl~yA~~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~a~~E~~~g~~e~Ar~il  381 (1043)
                      .|+++.++..|+++|...|....+|..++.++...|+.+.|...|++++.. .|+....+..++.+....+..+.+...+
T Consensus         9 ~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l-~P~~~~~~~~l~~ll~a~~~~~~a~~~~   87 (264)
T d1zbpa1           9 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL-FPEYLPGASQLRHLVKAAQARKDFAQGA   87 (264)
T ss_dssp             TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             889999999999999978999999999999999879999999999999986-9973899999999998346637899875


Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             96641788125999999999999809999999999999999
Q 001619          382 PESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET  422 (1043)
Q Consensus       382 ~ral~~~~~~~~~iw~~~a~lE~~~G~~e~Ar~iyekal~~  422 (1043)
                      .+......+.....+...+......|+.+.|..+++++.+.
T Consensus        88 ~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          88 ATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             CCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf             44420358647999999999999679989999999999833

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.78  E-value=0.00069  Score=37.13  Aligned_cols=66  Identities=11%  Similarity=-0.019  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             779999999999998299679999999986049992899999999999809968999999999998
Q 001619          287 IQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQI  352 (1043)
Q Consensus       287 ~~~~~W~~yi~~e~~~g~~e~v~~lyerAi~~~~~~~~LWl~yA~~~e~~g~~e~Ar~ilerA~~~  352 (1043)
                      ..+..|...+..+...|+++.+...+++++...|..+.+|...+..+...|+..+|..+|+++...
T Consensus        65 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~  130 (179)
T d2ff4a2          65 DKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT  130 (179)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             999999999999988799057899999999849851999999999999855799999999999999

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.37  E-value=0.0025  Score=33.73  Aligned_cols=99  Identities=17%  Similarity=0.143  Sum_probs=56.4

Q ss_pred             HHCCCHHHHHHHHHHHHCCCCCC------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             98299679999999986049992------------899999999999809968999999999998730260689999999
Q 001619          300 EKQGDFDWVVKLYERCLIPCADY------------PEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARY  367 (1043)
Q Consensus       300 ~~~g~~e~v~~lyerAi~~~~~~------------~~LWl~yA~~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~a~~  367 (1043)
                      ...|+++.++..|++|+..++..            ..+|.+.+..+...|+++.|...+++++..+..... .+.     
T Consensus        20 ~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~-~~~-----   93 (156)
T d2hr2a1          20 LVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE-LNQ-----   93 (156)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC-TTS-----
T ss_pred             HHCCCHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCC-CCC-----
T ss_conf             98599999999999999868442010200121027999999999999828630015766435530431002-455-----


Q ss_pred             HHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             99808999999999966417881259999999999998099999999999999998
Q 001619          368 KEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETA  423 (1043)
Q Consensus       368 E~~~g~~e~Ar~il~ral~~~~~~~~~iw~~~a~lE~~~G~~e~Ar~iyekal~~~  423 (1043)
                                         ...+.....+...+.....+|+++.|...|++|+++.
T Consensus        94 -------------------~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~  130 (156)
T d2hr2a1          94 -------------------DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI  130 (156)
T ss_dssp             -------------------THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             -------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             -------------------4431127877526999998888888899999999866

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.0029  Score=33.29  Aligned_cols=25  Identities=20%  Similarity=0.121  Sum_probs=9.5

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             9999999809999999999999999
Q 001619          398 FKANMERRLGNFVAACDTYKEALET  422 (1043)
Q Consensus       398 ~~a~lE~~~G~~e~Ar~iyekal~~  422 (1043)
                      ..+....+.|+++.|+..|+++|++
T Consensus        51 ~Lg~~~~~~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_          51 YLSYAVYQQGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             8726888657739888788779886

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.10  E-value=0.0049  Score=31.91  Aligned_cols=62  Identities=10%  Similarity=0.026  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHCCC-------CC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             99999999998299679999999986049-------99----2899999999999809968999999999998
Q 001619          291 NWHDYLSFAEKQGDFDWVVKLYERCLIPC-------AD----YPEFWMRYVDFMESKGGREIASYALDRATQI  352 (1043)
Q Consensus       291 ~W~~yi~~e~~~g~~e~v~~lyerAi~~~-------~~----~~~LWl~yA~~~e~~g~~e~Ar~ilerA~~~  352 (1043)
                      .|...+..+...|+++.+...|++|+..+       +.    ....|...+..+...|+.++|...|++|+.+
T Consensus        57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l  129 (156)
T d2hr2a1          57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  129 (156)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999828630015766435530431002455443112787752699999888888889999999986

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=96.76  E-value=0.0095  Score=30.17  Aligned_cols=63  Identities=10%  Similarity=0.055  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHH
Q ss_conf             899999999999809998999999999983389999999999999720---89968999999999996
Q 001619           73 YGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMST---FEDPNDVRRLFKRALSF  137 (1043)
Q Consensus        73 ~~lW~~yi~~e~~~~~~e~a~~lfeRAL~~~p~s~~LW~~Y~~~~~~~---~~~~e~ar~vferAL~~  137 (1043)
                      ++.|..........+++++|...|+||.+.  .+.+-+..++.+...-   ..+++.+...+.++...
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~   67 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL   67 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCC
T ss_conf             899999999999877999999999999978--999999999999980999605699998750122211

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=96.76  E-value=0.0096  Score=30.14  Aligned_cols=95  Identities=11%  Similarity=0.011  Sum_probs=56.2

Q ss_pred             CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf             99999999999981199918999999999999699998999999999998----09998999999999983389999999
Q 001619           36 DFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKAR----LCSIDKVVEVFERAVQSATYSVDVWF  111 (1043)
Q Consensus        36 d~~~W~~~i~~~e~~~~~~~~~ar~vyeraL~~~P~s~~lW~~yi~~e~~----~~~~e~a~~lfeRAL~~~p~s~~LW~  111 (1043)
                      |.++|+.+...+...  +++.++...|+++.+.  .+...+..+..+...    ..++..+...|+++...  ..+..+.
T Consensus         1 ~p~~~~~lG~~~~~~--~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~   74 (265)
T d1ouva_           1 DPKELVGLGAKSYKE--KDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCH   74 (265)
T ss_dssp             CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred             CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCC--CCCCHHH
T ss_conf             989999999999987--7999999999999978--999999999999980999605699998750122211--1111231


Q ss_pred             HHHHHHHHH---CCCHHHHHHHHHHHHH
Q ss_conf             999999720---8996899999999999
Q 001619          112 HYCSLSMST---FEDPNDVRRLFKRALS  136 (1043)
Q Consensus       112 ~Y~~~~~~~---~~~~e~ar~vferAL~  136 (1043)
                      .++.+....   ..+.+.+...|.+|..
T Consensus        75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~  102 (265)
T d1ouva_          75 LLGNLYYSGQGVSQNTNKALQYYSKACD  102 (265)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             3501224321121236779888765543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.013  Score=29.36  Aligned_cols=15  Identities=20%  Similarity=0.293  Sum_probs=5.1

Q ss_pred             CCCHHHHHHHHHHHH
Q ss_conf             299679999999986
Q 001619          302 QGDFDWVVKLYERCL  316 (1043)
Q Consensus       302 ~g~~e~v~~lyerAi  316 (1043)
                      .|+++.++..|++|+
T Consensus        18 ~g~y~~A~~~~~~Al   32 (95)
T d1tjca_          18 EADYYHTELWMEQAL   32 (95)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
T ss_conf             779999999999999

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.08  E-value=0.2  Score=22.12  Aligned_cols=19  Identities=21%  Similarity=0.293  Sum_probs=8.1

Q ss_pred             HHCCCHHHHHHHHHHHHHH
Q ss_conf             9809999999999999999
Q 001619          404 RRLGNFVAACDTYKEALET  422 (1043)
Q Consensus       404 ~~~G~~e~Ar~iyekal~~  422 (1043)
                      .++|++++|++.++++|+.
T Consensus        84 yklgdy~~A~~~~~~~L~i  102 (124)
T d2pqrb1          84 YKLGEYSMAKRYVDTLFEH  102 (124)
T ss_dssp             HHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCC
T ss_conf             9873299999999999823

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=84.30  E-value=0.67  Score=18.86  Aligned_cols=14  Identities=29%  Similarity=0.292  Sum_probs=5.5

Q ss_pred             CHHHHHHHHHHHHH
Q ss_conf             99999999999999
Q 001619          408 NFVAACDTYKEALE  421 (1043)
Q Consensus       408 ~~e~Ar~iyekal~  421 (1043)
                      |.+.|...|++|.+
T Consensus       110 d~~~A~~~~~~Aa~  123 (133)
T d1klxa_         110 NEKQAVKTFEKACR  123 (133)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
T ss_conf             89999999999998